BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003746
         (798 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/794 (75%), Positives = 687/794 (86%), Gaps = 1/794 (0%)

Query: 5   TKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFA 64
           +KL  LSS +KS+ N KP FKPTI LSILETHL  C + KQF +ILSQMILTG I+DTFA
Sbjct: 16  SKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFA 75

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           ASRL+KFSTD  PFI + YS +IF  +E+ NGF++NTMMRAYIQ N  ++A+ LYKLM+ 
Sbjct: 76  ASRLLKFSTDS-PFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK 134

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           NNVG DNYTYPL+ QA A+RL  F GK IHDHVLK GFDSDVYV NTLINMYAVCG++  
Sbjct: 135 NNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRD 194

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNV 244
           ARKLFDESPVLD VSWNSILAGYV   +VEEAK I+++MP+RNI+ASNSMIVL G+ G V
Sbjct: 195 ARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQV 254

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            EA +LF EM +KD+VSWSALIS YEQN MYEEALV+F+ M  + + +DEVVVVSVLSAC
Sbjct: 255 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A+L++VK G  +H L +++GIE Y+NLQNALIHMYS  GEI  A+KLF+  HNLD ISWN
Sbjct: 315 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWN 374

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           SMISG +KCGSVEKARALFD M EKD+VSWS +ISGYAQHD FSETL+LF EMQ   IRP
Sbjct: 375 SMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRP 434

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           DE  LVSVISACTHL ALDQGKW+HAYIRKNGLK+N ILGTTL+DMYMK GCV+NALEVF
Sbjct: 435 DETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVF 494

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +G EEKGVSSWNALIIG A+NGL ++SL+MFSEMK +GV PNEITF+GVLGACRHMGLVD
Sbjct: 495 NGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVD 554

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG  HF SMI++H +EPN KHYGCMVDLLGRAG+L EAE+LIESMPM+PDVATWGALLGA
Sbjct: 555 EGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 614

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           CKKHGD EMGERVGRKL+ELQPDHDGFHVLLSNI ASKG W+DVLEVRGMM ++GVVK P
Sbjct: 615 CKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTP 674

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS+IEANG++HEFLAGD+THP IN+++ ML+EMAK+LK+EGYAPDT EV+ DID+EEKE
Sbjct: 675 GCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKE 734

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
           TTLFRHSEKLAIAFGL+TISPP PIRIMKNLRICNDCHTAAK IS+A+ REIVVRDRHRF
Sbjct: 735 TTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRF 794

Query: 785 HHFKHGSCSCMDFW 798
           H+FK G+CSCMD+W
Sbjct: 795 HYFKEGACSCMDYW 808


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/796 (75%), Positives = 683/796 (85%), Gaps = 8/796 (1%)

Query: 5   TKLAHLSSTIKSSVNAKPIF--KPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADT 62
           ++L +LS   K      P F  KPT+ L ILETHLQKCQ+ KQF QILSQMIL+G   D+
Sbjct: 4   SRLNYLSKPFKI-----PTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDS 58

Query: 63  FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           FAASRL+KFST+L PFI ++ S++IF+ +E+PNGFI NTMM+ Y+QRN P +AI +YK M
Sbjct: 59  FAASRLLKFSTEL-PFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFM 117

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
           L +NV  DNYTYP+L Q+ ++RL+ F+GK I DHVLK GFDSDVY+ NTLINMYAVCG+L
Sbjct: 118 LESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNL 177

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242
           S ARK+FD S VLD+VSWNS+LAGYV   NVEEAK +Y++MPERN+IASNSMIVLFG+KG
Sbjct: 178 SDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKG 237

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           NV EAC+LF EM +KDLVSWSALISCYEQNEMYEEAL+LF  M  + +MVDEVVV+SVLS
Sbjct: 238 NVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLS 297

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           AC+ L VV  G  VH L VK+GIE Y+NLQNALIHMYSSC E+ TA+KLF     LD IS
Sbjct: 298 ACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQIS 357

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WNSMISGY+KCG +EKARALFD+M +KD VSWS MISGYAQ D+F+ETL LF EMQ  G 
Sbjct: 358 WNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGT 417

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +PDE  LVSVISACTHL ALDQGKWIHAYIRKNGLKIN ILGTTLI+MYMKLGCV++ALE
Sbjct: 418 KPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF G EEKGVS+WNALI+G AMNGL DKSL+ FSEMK+ GVTPNEITFV VLGACRHMGL
Sbjct: 478 VFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGL 537

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           VDEGHRHFNSMIQEH++ PN KHYGCMVDLLGRAGMLKEAEELIESMPM+PDV+TWGALL
Sbjct: 538 VDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALL 597

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
           GACKK+GD+E GER+GRKLVEL PDHDGF+VLLSNI+ASKG W DVLEVRGMM + GVVK
Sbjct: 598 GACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PGCSMIEA+G +HEFLAGD+THPQ   I++MLDEMAKKLKLEGYAPDT EV+ DID+EE
Sbjct: 658 TPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEE 717

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           KETTLFRHSEKLAIAFGLI I PP PIRI+KNLRICNDCHTAAK IS+AF+REIVVRDRH
Sbjct: 718 KETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRH 777

Query: 783 RFHHFKHGSCSCMDFW 798
           RFHHFK GSCSCMD+W
Sbjct: 778 RFHHFKQGSCSCMDYW 793


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/775 (67%), Positives = 633/775 (81%), Gaps = 4/775 (0%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           + +S L++ LQ C+  + F Q+LSQ ILTGLI D +AASRLI FS+     +   YS +I
Sbjct: 1   MKVSTLDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRI 60

Query: 88  FAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           F  L +PN F +NT+MRA++  +N P QA+  YKL L ++   D+YTYP+L Q  A R+S
Sbjct: 61  FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            FEG+ +H H + +GFD DVYV NTL+N+YAVCG + +AR++F+ESPVLDLVSWN++LAG
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSA 264
           YV A  VEEA+ ++  MPERN IASNSMI LFGRKG V +A R+F  +   ++D+VSWSA
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           ++SCYEQNEM EEALVLF+ M    V VDEVVVVS LSAC+ +  V+ G  VH LAVK+G
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSMISGYLKCGSVEKARALF 383
           +E Y++L+NALIH+YSSCGEI  A ++FD  G  LDLISWNSMISGYL+CGS++ A  LF
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
            +M EKDVVSWS MISGYAQH+ FSE L+LF EMQ HG+RPDE  LVS ISACTHL  LD
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLD 420

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            GKWIHAYI +N L++N IL TTLIDMYMK GCV+NALEVF+  EEKGVS+WNA+I+G A
Sbjct: 421 LGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLA 480

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           MNG  ++SL MF++MKK+G  PNEITF+GVLGACRHMGLV++G  +FNSMI EH++E N 
Sbjct: 481 MNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANI 540

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           KHYGCMVDLLGRAG+LKEAEELI+SMPM+PDVATWGALLGAC+KH D+EMGER+GRKL++
Sbjct: 541 KHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQ 600

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           LQPDHDGFHVLLSNI+ASKG W +VLE+RG+M + GVVK PGCSMIEANG +HEFLAGD+
Sbjct: 601 LQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDK 660

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           THPQIN+I++MLD +A KLK+EGY P T EV+ DID+EEKET LFRHSEKLA+AFGLITI
Sbjct: 661 THPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITI 720

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           SPP PIR+ KNLRICNDCHT  K IS+AFDR+IVVRDRHRFHHFKHG+CSCMDFW
Sbjct: 721 SPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/729 (70%), Positives = 607/729 (83%), Gaps = 1/729 (0%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           M+LTG I +T+AASRLIKFST   PFI + Y+ +IF F+E+ N F++N M+RAYIQ N P
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHF-PFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSP 59

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
             A  LYK ML+N +G DNYTYPLL QA ++R S +E K +H+HVLK GFDSDVYV NTL
Sbjct: 60  HFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTL 119

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232
           IN ++VC +++ A ++F+ES VLD VSWNSILAGY+   NVEEAK IY++MPER+IIASN
Sbjct: 120 INCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 179

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           SMIVLFG +G V EAC+LF EM +KD+V+WSALI+C++QNEMYEEA+  F+ M    VMV
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV 239

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           DEVV VS LSACANL VV  G  +H+L++KIG E YINLQNALI+MYS CG+I  A KLF
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D  + LDLISWNSMISGYLKC  V+ A+A+FD+M EKDVVSWS+MISGYAQ+D F ETL+
Sbjct: 300 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 359

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF EMQ  G +PDE TLVSVISAC  L AL+QGKW+HAYI++NGL IN ILGTTLIDMYM
Sbjct: 360 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 419

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K GCV+ ALEVF+G  EKG+S+WNALI+G AMNGL + SL+MFS MKK  VTPNEITF+G
Sbjct: 420 KCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 479

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VLGACRHMGLVDEG  HF SMI +H+++PN KHYGCMVDLLGRAG L+EAEEL+  MPM+
Sbjct: 480 VLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMT 539

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PDVATWGALLGACKKHGD EMG RVGRKL+ELQPDHDGFHVLLSNI+ASKG+WDDVLE+R
Sbjct: 540 PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIR 599

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
           GMM +  V+KIPGCSMIEANG+IHEFLAGD+THP ++ I++ML EMA KLKLEGY PD  
Sbjct: 600 GMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDIN 659

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
           EV  D+D+EEKE+TLFRHSEKLAIAFGLI ISPP PIRIMKNLRICNDCHTAAK IS+AF
Sbjct: 660 EVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAF 719

Query: 773 DREIVVRDR 781
            R+IV   R
Sbjct: 720 CRKIVFLFR 728


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/687 (72%), Positives = 579/687 (84%)

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           RAYIQ N P  A  LYK ML+N +G DNYTYPLL QA ++R S +E K +H+HVLK GFD
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           SDVYV NTLIN ++VC +++ A ++F+ES VLD VSWNSILAGY+   NVEEAK IY++M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
           PER+IIASNSMIVLFG +G V EAC+LF EM +KD+V+WSALI+C++QNEMYEEA+  F+
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    VMVDEVV VS LSACANL VV  G  +H+L++KIG E YINLQNALI+MYS CG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           +I  A KLFD  + LDLISWNSMISGYLKC  V+ A+A+FD+M EKDVVSWS+MISGYAQ
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +D F ETL+LF EMQ  G +PDE TLVSVISAC  L AL+QGKW+HAYI++NGL IN IL
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 545

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GTTLIDMYMK GCV+ ALEVF+G  EKG+S+WNALI+G AMNGL + SL+MFS MKK  V
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 605

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           TPNEITF+GVLGACRHMGLVDEG  HF SMI +H+++PN KHYGCMVDLLGRAG L+EAE
Sbjct: 606 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 665

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           EL+  MPM+PDVATWGALLGACKKHGD EMG RVGRKL+ELQPDHDGFHVLLSNI+ASKG
Sbjct: 666 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKG 725

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +WDDVLE+RGMM +  V+KIPGCSMIEANG+IHEFLAGD+THP ++ I++ML EMA KLK
Sbjct: 726 KWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 785

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
           LEGY PD  EV  D+D+EEKE+TLFRHSEKLAIAFGLI ISPP PIRIMKNLRICNDCHT
Sbjct: 786 LEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHT 845

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHG 790
           AAK IS+AF R+IVVRDRHRFHHF+ G
Sbjct: 846 AAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 197/416 (47%), Gaps = 64/416 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   +   ++ ++  + Q  + ++AI  +  M    V VD         A A  L
Sbjct: 331 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 390

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  GKLIH   LK G +S + + N LI MY+ CGD+  ARKLFDE+ +LDL+SWNS+++
Sbjct: 391 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           GY+  + V+ AK I++ MPE+++++ +SM                               
Sbjct: 451 GYLKCNLVDNAKAIFDSMPEKDVVSWSSM------------------------------- 479

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           IS Y QN++++E L LF  M       DE  +VSV+SACA L  ++ G  VHA   + G+
Sbjct: 480 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL 539

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + L   LI MY  CG + TA ++F       + +WN++I G    G VE        
Sbjct: 540 TINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVE-------- 591

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                   +L +F  M+   + P+E T + V+ AC H+  +D+G
Sbjct: 592 -----------------------SSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 446 K-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +   ++ I  + ++ N      ++D+  + G +  A E+ +       V++W AL+
Sbjct: 629 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALL 684


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/630 (58%), Positives = 463/630 (73%), Gaps = 14/630 (2%)

Query: 183 SAARKLFDESPVLDLVSWNSILAGYV-NADNVEEAKFIYNKMPERNIIASN---SMIVLF 238
           SA +  F+  P        SIL  ++ N  N+++   I ++M     I+     S ++ F
Sbjct: 11  SALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKF 70

Query: 239 GRKG---NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
                   +  + ++F  +   +   W+ ++  Y Q+   E+AL+L+  M+ + V  D  
Sbjct: 71  STDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNY 130

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
               V+ ACA   +   G  +H   +K+G +  + +QN LI+MY+ CG +  A KLFD  
Sbjct: 131 TYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDES 190

Query: 356 HNLDLISWNSMISGYLK---CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
             LD +SWNS+++GY+K    G V +A  LF+ M EKD+VSWS +ISGY Q+  + E L 
Sbjct: 191 PVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALV 250

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI---- 468
           +F+EM  +G+R DE  +VSV+SAC HL  +  GK IH  + + G++    L   LI    
Sbjct: 251 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 310

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMYMK GCV+NALEVF+G EEKGVSSWNALIIG A+NGL ++SL+MFSEMK +GV PNEI
Sbjct: 311 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 370

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+GVLGACRHMGLVDEG  HF SMI++H +EPN KHYGCMVDLLGRAG+L EAE+LIES
Sbjct: 371 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 430

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MPM+PDVATWGALLGACKKHGD EMGERVGRKL+ELQPDHDGFHVLLSNI ASKG W+DV
Sbjct: 431 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDV 490

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
           LEVRGMM ++GVVK PGCS+IEANG++HEFLAGD+THP IN+++ ML+EMAK+LK+EGYA
Sbjct: 491 LEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYA 550

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT EV+ DID+EEKETTLFRHSEKLAIAFGL+TISPP PIRIMKNLRICNDCHTAAK I
Sbjct: 551 PDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLI 610

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S+A+ REIVVRDRHRFH+FK G+CSCMD+W
Sbjct: 611 SKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/501 (49%), Positives = 321/501 (64%), Gaps = 66/501 (13%)

Query: 5   TKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFA 64
           +KL  LSS +KS+ N KP FKPTI LSILETHL  C + KQF +ILSQMILTG I+DTFA
Sbjct: 4   SKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFA 63

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           ASRL+KFSTD  PFI + YS +IF  +E+ NGF++NTMMRAYIQ N  ++A+ LYKLM+ 
Sbjct: 64  ASRLLKFSTDS-PFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK 122

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           NNVG DNYTYPL+ QA A+RL  F GK IHDHVLK GFDSDVYV NTLINMYAVCG++  
Sbjct: 123 NNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRD 182

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNV 244
           ARKLFDESPVLD VSWNSILAGYV                              G  G V
Sbjct: 183 ARKLFDESPVLDSVSWNSILAGYVKK----------------------------GDMGQV 214

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            EA +LF EM +KD+VSWSALIS YEQN MYEEALV+F+ M  + + +DEVVVVSVLSAC
Sbjct: 215 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 274

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS----SCGEITTAEKLFDAGHNLDL 360
           A+L++VK G  +H L +++GIE Y+NLQNALIHMYS     CG +  A ++F+      +
Sbjct: 275 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGV 334

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
            SWN++I G    G VE+                               +L +F EM+++
Sbjct: 335 SSWNALIIGLAVNGLVER-------------------------------SLDMFSEMKNN 363

Query: 421 GIRPDEATLVSVISACTHLVALDQGKW-IHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
           G+ P+E T + V+ AC H+  +D+G+    + I K+G++ N      ++D+  + G ++ 
Sbjct: 364 GVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 423

Query: 480 ALEVFHGTE-EKGVSSWNALI 499
           A ++         V++W AL+
Sbjct: 424 AEKLIESMPMAPDVATWGALL 444


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/648 (52%), Positives = 456/648 (70%), Gaps = 7/648 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLPFIEMSYSF 85
           + +++L+ HL +C S +   QI +Q + +GL+AD FAASRLI F  ST LLP +   +S 
Sbjct: 2   LTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLP-LPFHHSL 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++   +  PN F  N +++A  +  +P   + LY  M   +   D YT+ +LA A A R 
Sbjct: 61  RLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRR 117

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ EG+ +H H ++ GF  ++Y+ N L++MY+ CG L  ARK+FD  PV D VSWN+ILA
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILA 177

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV A++V++A  ++ +MPER   A +SM+ LFGR+G V EA ++F  + +KD+ +W+A+
Sbjct: 178 AYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAM 237

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ISC+++N  + EAL LF +M      VDE V+V V++ACA L V + G   H LA + G+
Sbjct: 238 ISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGL 297

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +N+QNALIHMYSS   +  A +LFD+G  LD  SWNSMI+GYLK GSV+ A+ LF  
Sbjct: 298 GSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTV 357

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +KD VSW+TMISG  Q+DQ SE L++F  MQ  GI+PDE TLVSVISACT++ +L+QG
Sbjct: 358 MPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG 417

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K +H YIR++   I  ILGT+LIDMYMK GC+++ALEVF   EE+G   WNA+I+G AMN
Sbjct: 418 KSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMN 477

Query: 506 GLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GL  KSL+MFSEM+ S   TPNEITF GVL ACRH GLV+EG   F  M  ++ + PN +
Sbjct: 478 GLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIR 537

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG +KEAE LIESMPMSPDV  WGALLG+C KHGD+E+GERVGRKLV L
Sbjct: 538 HYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL 597

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            P HDGFH +LSNI+AS+G W  V ++RG M +  V KIPG S++E++
Sbjct: 598 DPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESS 645


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/648 (52%), Positives = 456/648 (70%), Gaps = 7/648 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLPFIEMSYSF 85
           + +++L+ HL +C S +   QI +Q + +GL+AD FAASRLI F  ST LLP +   +S 
Sbjct: 2   LTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLP-LPFHHSL 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++   +  PN F  N +++A  +  +P   + LY  M   +   D YT+ +LA A A R 
Sbjct: 61  RLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRR 117

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ EG+ +H H ++ GF  ++Y+ N L++MY+ CG L  ARK+FD  PV D VSWN+ILA
Sbjct: 118 AIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILA 177

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV A++V++A  ++ +MPER   A +SM+ LFGR+G V EA ++F  + +KD+ +W+A+
Sbjct: 178 AYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAM 237

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ISC+++N  + EAL LF +M      VDE V+V V++ACA L V + G   H LA + G+
Sbjct: 238 ISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGL 297

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +N+QNALIHMYSS   +  A +LFD+G  LD  SWNSMI+GYLK GSV+ A+ LF  
Sbjct: 298 GSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTV 357

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +KD VSW+TMISG  Q+DQ SE L++F  MQ  GI+PDE TLVSVISACT++ +L+QG
Sbjct: 358 MPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG 417

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K +H YIR++   I  ILGT+LIDMYMK GC+++ALEVF   EE+G   WNA+I+G AMN
Sbjct: 418 KSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMN 477

Query: 506 GLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GL  KSL+MFSEM+ S   TPNEITF GVL ACRH GLV+EG   F  M  ++ + PN +
Sbjct: 478 GLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIR 537

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG +KEAE LIESMPMSPDV  WGALLG+C KHGD+E+GERVGRKLV L
Sbjct: 538 HYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNL 597

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            P HDGFH +LSNI+AS+G W  V ++RG M +  V KIPG S++E++
Sbjct: 598 DPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESS 645


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/651 (51%), Positives = 457/651 (70%), Gaps = 10/651 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD-----LLPFIEMS 82
           + +SIL+  L +C S +   QI +Q + +GL+AD +AASRL+ F+T      LLP   + 
Sbjct: 2   LTVSILDAQLSRCCSARHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPH-PLH 60

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           +S ++F  + SPN F  NT+++A +++  P     LY  M       D YT+PLLA A A
Sbjct: 61  HSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLAAACA 117

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
            R  V EG  +H H +K GF  ++Y+ N L++MY+ CG +++AR++FD  PV D VSWN+
Sbjct: 118 ARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNT 177

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           ILA YV   +VE+A  ++ +MPER+  A ++M+ LF R+G V EA  +F     +D  +W
Sbjct: 178 ILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTW 237

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +A++SC+E+N+++ EAL +F +M +    VDE V+VSV++ACA   V++ G   H L V+
Sbjct: 238 TAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVR 297

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G+   +N+QN LIHMYSSC ++  A +LFD G +LD  SWNSMISGYLK G VE A+AL
Sbjct: 298 AGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKAL 357

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M +KD VSWS MI+G   ++Q SE L++F  M+ H I+PD+ TLVSVISAC++L AL
Sbjct: 358 FDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSAL 417

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +QGK +H YIRK    I  +LGT+LIDMYMK GC++ ALEVF   EEKG   WNA+I+G 
Sbjct: 418 EQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGL 477

Query: 503 AMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           AMNGL  +SL+MFSEM+ +G   PNEITF GVL ACRH GLV+EG + F  M  ++++ P
Sbjct: 478 AMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVP 537

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           N +HYGCMVDLLGRAG ++EAE++I+SMPMSPDV  WGALLGAC KHGD E+GERVG+KL
Sbjct: 538 NIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKL 597

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           V+L PDHDGF  +LSNI+AS+G W  V ++RG M ++ V K+ GCSM+E +
Sbjct: 598 VKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVEPS 648


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/651 (50%), Positives = 459/651 (70%), Gaps = 11/651 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD-----LLPFIEMS 82
           + +S+L+  L +C+S +   +I +Q + +GL+AD +AASRL+ F+T      LLP   + 
Sbjct: 2   LTVSLLDAQLSRCRSARHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLP-QPLH 60

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           +S ++F  + SPN F  NT++RA +++ +P     LY  M       D YT+PLLA A A
Sbjct: 61  HSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASM---PAAPDTYTHPLLAAACA 117

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
            R    EG+ +H H +K GF  ++Y+ N L++MY+ CG ++ AR++FD  PV D VSWN+
Sbjct: 118 ARGDAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNT 177

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           ILA YV   +VE+A  ++ +MPER+  A +SM+ LF R G V EA  +F     +D  +W
Sbjct: 178 ILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTW 237

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +A+ISC+E+N+++ EAL +F +M +    VDE V+VSV++ACA   V++ G   H L V+
Sbjct: 238 TAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVR 297

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G+   +N+QNALIHMYSSC ++  A +LFD+  +LD  SWNSMISGYLK G VE A+AL
Sbjct: 298 AGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKAL 357

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F+ M +KD VSWS MI+G  Q++Q SE L++F  M+ H I+PDE TLVSVISACT+L AL
Sbjct: 358 FNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCAL 417

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +QGK +H YIR+    I  +LGT+LIDMYMK GC++ ALEVF   EEKG   WNA+I+G 
Sbjct: 418 EQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGL 477

Query: 503 AMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           AMNGL  +SL+MFSEM+ SG+  P+EITF GVL ACRH GLV+EG + F  M  ++++ P
Sbjct: 478 AMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIP 537

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           N +HYGCMVDLLGRAG ++EAE+LI+SMPMSPDV  WGALLGAC KH D E+GERVG+KL
Sbjct: 538 NIRHYGCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKL 597

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           V+L P HDGF  +LSNI+AS+G W  V ++RG M ++ V K+ GCS++E++
Sbjct: 598 VKLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSM-KQHVAKVAGCSVVESS 647


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/660 (51%), Positives = 463/660 (70%), Gaps = 8/660 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFST--DLLPFIEMSYSF 85
           + +S+L+ HL +C S +   QI +Q I +GL+AD FAASRL+ F++   LLP +   +S 
Sbjct: 2   LTVSLLDAHLARCCSARHLLQIHAQFIASGLLADAFAASRLLLFTSASRLLP-LPFHHSL 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++   +  PN F  NT++++ +   +P   + LY  +       D+YT+P+LA A A R 
Sbjct: 61  RLLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASL---PAPPDSYTHPILAAACASRK 117

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V EG+ +H H +  GF  ++Y+ N LI MY+ CG L  AR++FD  PV D VSWN+ILA
Sbjct: 118 DVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILA 177

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV+A +V++A  ++ +MP+RN  A +SM+ LFGR+G V EA R+F     +D+ +W+A+
Sbjct: 178 AYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAM 237

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ISC+E+N+M+ EAL +F  M   R  VDE ++VSV+SACA   V++ G   H L ++ G+
Sbjct: 238 ISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGL 297

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +N+QNALIHMYSSC ++  A +LFD+G  LD  SWNSMI+GYLK G V+ A ALF A
Sbjct: 298 CSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSA 357

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  KD VSWST+ISG  Q++Q S+ L++F  MQ  GIRPDE T+VSVISACT+L AL++G
Sbjct: 358 MPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKG 417

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K +H YI++N   ++ +LGT+LI+MYMK GC++ ALE F+  EEKG   WNA+I+G AMN
Sbjct: 418 KSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMN 477

Query: 506 GLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GL  KSL+MFSEM+ S   TPNEITF GVL ACRH GLVDEG   F  M   +++ PN +
Sbjct: 478 GLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIR 537

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG +KEAE++I+SMPMSPDV  WGALLGAC KHG++E+GERVGRKLV  
Sbjct: 538 HYGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNR 597

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P HDGF  +LSNI+A +G W  V ++RG M +R V K+ G S+++++   +E LAGD T
Sbjct: 598 DPLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHVQKVSGHSVVKSSH-SYEILAGDGT 656


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/762 (45%), Positives = 484/762 (63%), Gaps = 63/762 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KCQS + F QI + +I TGL    FA S+LI+FS  +    ++SY+  +F  +E PN 
Sbjct: 36  LSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSA-VSRSGDISYAISLFNSIEEPNL 94

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           FI+N+M+R       P  A+  +  M+ + V  ++YT+P L ++ A   S  EGK IH H
Sbjct: 95  FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK GF SDV+++ +LINMYA  G+++ A+ +FD+S   D +S+ +++AGY     ++ A
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           +                               +LF EMP KD+VSW+A+I+ Y Q    +
Sbjct: 215 R-------------------------------QLFDEMPVKDVVSWNAMIAGYAQMGRSK 243

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL+LF +M    V  +E  +VSVLSACA    +  G S+ +     G+   + L NALI
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MYS                               KCG ++ AR LFD M+E+DV+SW+ 
Sbjct: 304 DMYS-------------------------------KCGDLQTARELFDDMLERDVISWNV 332

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI GY     + E L+LF EM   G+ P E T +S++ +C HL A+D GKWIHAYI KN 
Sbjct: 333 MIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
             +++ L T+LID+Y K G +  A +VF G + K ++SWNA+I G AM+G ADK+ E+FS
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFS 452

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M   G+ PNEITFVG+L AC+H GLVD G + F+SM+Q++++ P S+HYGCM+DLLGRA
Sbjct: 453 KMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRA 512

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G+ +EAE L+++M + PD A WG+LLGAC+ HG  E+GE V  +L EL+PD+ G +VLLS
Sbjct: 513 GLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLS 572

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A  G+WDDV  +R  +  RG+ K+PGC+ IE + ++HEFL GD+ HPQ  +I  ML+
Sbjct: 573 NIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLE 632

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+ ++LK+ G+  DT EV +D+D+E KE  L  HSEKLAIAFGLI+  P  PIRI+KNLR
Sbjct: 633 EVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLR 692

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C +CH+A K IS+ F+REI+ RDR+RFHHFK GSCSC D+W
Sbjct: 693 VCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/646 (51%), Positives = 450/646 (69%), Gaps = 7/646 (1%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFS--TDLLPFIEMSYSF 85
           + +S+L+  L +C S +   QI  Q I +GL+AD FAASRL+ F+  T LLPF  + +SF
Sbjct: 2   LTVSLLDAQLARCSSVRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLPF-PIHHSF 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++   +  PN F  NT+++A +   +P   + LY  +       D YT+P+LA A A R 
Sbjct: 61  RLLRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTSL---PASPDTYTHPILAAACAARR 117

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V EG+ +  H ++ GF  D+Y+ N L++MY+VCG L  AR++FD  PV D VSWN+ILA
Sbjct: 118 DVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILA 177

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV+A +V++A  ++ +MP+RN  A +SM+ LFGR+G V EA  +F E   +D+ +W+A+
Sbjct: 178 AYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAM 237

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ISC+E+N+M+ EAL +F  M      VDE ++VSV++ACA   V++ G   H L ++ G+
Sbjct: 238 ISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGL 297

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +N+QN LIHMYS C ++  A +LFD+G  LD  SWNSMI+GYLK G VE A  LF A
Sbjct: 298 CSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSA 357

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +KD VSWSTMISG  Q++Q S  L++F  M+  G+RPDE T+VSVISACT+L AL++G
Sbjct: 358 MPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKG 417

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K +H Y+R+N   I  +LGT+LIDMYMK G ++ A++VF+  EEKG   WNA+I+G AMN
Sbjct: 418 KSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMN 477

Query: 506 GLADKSLEMFSEMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GL  KSLE+FSEM+ S    PNEITF GVL ACRH GLV+EG   F  M  ++++ PN +
Sbjct: 478 GLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIR 537

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG +KEAE+LIESMPMSPDV  WGALLGAC KHG++E+GERVGRKLV L
Sbjct: 538 HYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLVNL 597

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            P HDGF  +LSNI+A +G W  V ++R  M +R V K+ G S++E
Sbjct: 598 DPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVE 643


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/799 (43%), Positives = 493/799 (61%), Gaps = 73/799 (9%)

Query: 10  LSSTIKSSVNAKPI--FKPTIN--LSILETH-----LQKCQSFKQFTQILSQMILTGLIA 60
           L+S   S V   P   F+PT +    +L+ H     L  C+SF+   QI SQ+I TGL  
Sbjct: 3   LASFSPSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHN 62

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
             FA S+LI+F   + PF  +SY+  +F  +E PN FI+NTM+R     + P  AI  Y 
Sbjct: 63  TQFALSKLIEFCA-ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYV 121

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            ML   V  ++YT+P L ++ A   +  EGK IH HVLK G +SD +V+ +LINMYA  G
Sbjct: 122 RMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNG 181

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240
           +L  A  +F +S + D VS+ +++ G                               +  
Sbjct: 182 ELGYAELVFSKSSLRDAVSFTALITG-------------------------------YTL 210

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +G + +A RLF+E+P +D VSW+A+I+ Y Q+  +EEAL  F  M    V  +E  +V+V
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           LSACA    ++ G  V +     G+   + L NALI MYS                    
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYS-------------------- 310

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KCG ++KAR LF+ + EKD++SW+ MI GY+  + + E L+LF +MQ  
Sbjct: 311 -----------KCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQS 359

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI-NSILGTTLIDMYMKLGCVDN 479
            + P++ T VS++ AC +L ALD GKWIHAYI K  L + N+ L T+LIDMY K G ++ 
Sbjct: 360 NVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEA 419

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A +VF G + K + SWNA+I G AM+G A+ +LE+F +M+  G  P++ITFVGVL AC H
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV+ G + F+SM++++ + P  +HYGCM+DLLGRAG+  EAE L+++M M PD A WG
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           +LLGAC+ HG+ E+GE   + L EL+P++ G +VLLSNI+A+ GRWDDV  +R  +  +G
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K+PGCS IE + ++HEFL GD+ H Q  +I  MLDE+ + L+  G+ PDT EV +D+D
Sbjct: 600 MKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMD 659

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +E KE +L  HSEKLAIAFGLI+  P   IRI+KNLR+C +CH+A K IS+ F+REI+ R
Sbjct: 660 EEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIAR 719

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR+RFHHFK GSCSCMD+W
Sbjct: 720 DRNRFHHFKDGSCSCMDYW 738


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/713 (44%), Positives = 443/713 (62%), Gaps = 52/713 (7%)

Query: 135 PLLAQASALRL-----SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC-----GDLSA 184
           P L Q   L L     S+ + K IH   +  G  S+  V   +I   A C     GD+  
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQII---AFCCKHELGDMEY 71

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER------------------ 226
           AR +FD  P  +   WN+++ GY        A  +Y +M ER                  
Sbjct: 72  ARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTR 131

Query: 227 ---------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                N+   N++I L+   G V+ A  +F    K D+V+W+ +
Sbjct: 132 DTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVM 191

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           IS Y +++ ++E++ LF  M   RV+   + +VSVLSAC+ L  +  G  VH     + I
Sbjct: 192 ISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKI 251

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           E    L+NALI MY++CG++ TA  +FD   + D+ISW ++++G+   G V  AR  FD 
Sbjct: 252 EPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDK 311

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M E+D VSW+ MI GY Q ++F E LSLF EMQ   I+PDE T+VS+++AC HL AL+ G
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG 371

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           +WI AYI KN +KI+S +G  LIDMY   G V+ A+ +F+    +   SW A+I G A+N
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAIN 431

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  +++L+MFS+M K+ +TP+E+T +GVL AC H G+VD+G + F  M  +H +EPN  H
Sbjct: 432 GYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAH 491

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGCMVDLLGRAG LKEA E+I++MP+ P+   WG+LLGAC+ H D EM E   ++++EL+
Sbjct: 492 YGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELE 551

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P++   +VLL NI+A+  RW+ + EVR +M+ RG+ K PGCS+IE NG +HEF+AGD+ H
Sbjct: 552 PENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVH 611

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ  EI + LDEM+  LK  GY+PDT EV  DI +EEKE+ ++RHSEKLAIAFGLI+  P
Sbjct: 612 PQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGP 671

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              IRI+KNLR+C DCH  AK +S+ ++RE++VRDR RFHHF+HGSCSC D+W
Sbjct: 672 GVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/594 (26%), Positives = 263/594 (44%), Gaps = 137/594 (23%)

Query: 16  SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL 75
           ++++  P   P++  +   + ++ C+S  Q  QI SQ I TGLI++    +++I F    
Sbjct: 5   TTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKH 64

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
               +M Y+  +F  +  PN F++N M++ Y +   P  A+ +Y  ML   V  D YTYP
Sbjct: 65  -ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYP 123

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            L +      +V  G+ +HDH++K GF S+V+V N LI++Y++ G++S AR +FD S   
Sbjct: 124 FLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKG 183

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS------------------------ 231
           D+V+WN +++GY  +   +E+  ++++M    ++ S                        
Sbjct: 184 DVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243

Query: 232 ---------------NSMIVLFGRKGNVAEACRLFKEMPKKDL----------------- 259
                          N++I ++   G++  A  +F  M  +D+                 
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303

Query: 260 --------------VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
                         VSW+A+I  Y Q   ++E L LF  M    +  DE  +VS+L+ACA
Sbjct: 304 LARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 363

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
           +L  ++ G  + A   K  I+    + NALI MY +CG +  A ++F+A  + D ISW +
Sbjct: 364 HLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTA 423

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +I G                            I+GY +     E L +F +M    I PD
Sbjct: 424 VIFGL--------------------------AINGYGE-----EALDMFSQMLKASITPD 452

Query: 426 EATLVSVISACTHLVALDQGKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           E T + V+ ACTH   +D+GK   A +  ++G++ N      ++D+  + G +  A EV 
Sbjct: 453 EVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEV- 511

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
                                            +K   V PN I +  +LGACR
Sbjct: 512 ---------------------------------IKNMPVKPNSIVWGSLLGACR 532


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 315/805 (39%), Positives = 475/805 (59%), Gaps = 43/805 (5%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAAS--RLIKFSTDLLPFIEMSYSFKIFAFLES- 93
           L  C++ K+  Q+   M+  GL+    A++  +LI  S  +     + Y+   F   +  
Sbjct: 32  LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGN 91

Query: 94  -PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
             + F++N ++R Y    +  QAI LY  ML   +  D YT+P L  A +  L++ EG  
Sbjct: 92  MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  VLK G + D++V+N+LI+ YA CG +   RKLFD     ++VSW S++ GY   D 
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDL 211

Query: 213 VEEAKFIYNKMPERNI---------------------------------------IASNS 233
            +EA  ++ +M E  +                                       I  N+
Sbjct: 212 SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNA 271

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ ++ + G++  A ++F E   K+LV ++ ++S Y  +E   + LV+   M+      D
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD 331

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +V ++S ++ACA L  +  G S HA  ++ G+E + N+ NA+I MY  CG+   A K+F+
Sbjct: 332 KVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFE 391

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              N  +++WNS+I+G ++ G +E A  +FD M+E+D+VSW+TMI    Q   F E + L
Sbjct: 392 HMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIEL 451

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F EMQ+ GI  D  T+V + SAC +L ALD  KW+  YI KN + ++  LGT L+DM+ +
Sbjct: 452 FREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSR 511

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G   +A+ VF   E++ VS+W A I   AM G  + ++E+F+EM +  V P+++ FV +
Sbjct: 512 CGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVAL 571

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H G VD+G + F SM + H + P+  HYGCMVDLLGRAG+L+EA +LI+SMP+ P
Sbjct: 572 LTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEP 631

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           +   WG+LL AC+KH + E+      KL +L P+  G HVLLSNI+AS G+W DV  VR 
Sbjct: 632 NDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRL 691

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M  +GV K+PG S IE  G+IHEF +GD +H +   I  ML+E+  +L   GY PDT  
Sbjct: 692 QMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTN 751

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D+D++EKE  L RHSEKLA+A+GLIT     PIR++KNLR+C+DCH+ AK +S+ ++
Sbjct: 752 VLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYN 811

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI VRD +R+H FK G CSC D+W
Sbjct: 812 REITVRDNNRYHFFKEGFCSCRDYW 836


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/707 (42%), Positives = 439/707 (62%), Gaps = 42/707 (5%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFD 190
           T+PL++       S+ + + +H   +K G +++  + N ++        GD   AR+LFD
Sbjct: 39  THPLISLLETCE-SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 97

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------------------ 226
           E P  +L  WN+++ GY   D  +    +Y +M      P+R                  
Sbjct: 98  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 157

Query: 227 ---------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                          N+    +++ ++   G +  A  +F   PK D+++W+ +IS Y +
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
              +EE+  LF+ M D +V+   V +V VLSAC+ L  ++ G  VH+      +E  + L
Sbjct: 218 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           +NA+I MY+ CGE+ +A  +F + +N D+ISW +++SG+   G ++ AR  FD M EKD 
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           VSW+ MI GY + ++F E L LF  MQ   ++PDE T+VSV++AC HL AL+ G+WI  Y
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           I +N +K +  +   LIDMY K G VD A  +F    ++   +W A+I+G A+NG  +K+
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L+MFS M K+ + P+EIT++GVL AC H GLVD+G ++F  M  +H +EPN  HYGC+VD
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 517

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LL RAG LKEA E+IE+MP+  +   WGALL  C+ + + +M E V ++++EL+PD+   
Sbjct: 518 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 577

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VLL NI+A+  RW+D+ E+R MM+ +G+ K PGCS+IE NG +HEF+AGDR+HPQ   I
Sbjct: 578 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNI 637

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
           D  LD+M + LKL GY+PD  EV  DI +E+KE ++FRHSEKLAIAFGLI   P   IRI
Sbjct: 638 DAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI 697

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR+C DCH  AK +S+ ++RE++VRDR RFHHFKHG CSC D+W
Sbjct: 698 TKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 160/564 (28%), Positives = 252/564 (44%), Gaps = 110/564 (19%)

Query: 12  STIKSSVNAKPIFKPTIN--LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI 69
           +TI ++ +A   F P  +  +S+LET    C+S  Q  Q+  Q I  GL A+    +R++
Sbjct: 23  TTIAATSSALKSFSPPTHPLISLLET----CESMDQLQQVHCQAIKKGLNANPVLQNRVM 78

Query: 70  KFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129
            F      + +  Y+ ++F  +  PN FI+NTM+R Y + + PQ  + LY  ML   V  
Sbjct: 79  TFCCTH-EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 137

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           D YT+P L +     +++  G+ +H HVLK G   +V+V+  L+ MY +CG L  AR +F
Sbjct: 138 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAK-------------------------------- 217
           D  P  D+++WN I++ Y      EE++                                
Sbjct: 198 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 257

Query: 218 -------FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM---------------- 254
                  ++ N   E N++  N+MI ++   G +  A  +F+ M                
Sbjct: 258 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 317

Query: 255 ---------------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
                          P+KD VSW+A+I  Y ++  ++EAL LF NM    V  DE  +VS
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 377

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL+ACA+L  ++ G  +     +  I+  + ++NALI MY  CG++  AE +F      D
Sbjct: 378 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
             +W +MI G    G  EKA                               L +F  M  
Sbjct: 438 KFTWTAMIVGLAVNGHGEKA-------------------------------LDMFSNMLK 466

Query: 420 HGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             I PDE T + V+SACTH   +D+G K+      ++G++ N      L+D+  + G + 
Sbjct: 467 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 526

Query: 479 NALEVFHGTEEKGVS-SWNALIIG 501
            A EV      K  S  W AL+ G
Sbjct: 527 EAYEVIENMPIKANSIVWGALLAG 550


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/707 (42%), Positives = 439/707 (62%), Gaps = 42/707 (5%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFD 190
           T+PL++       S+ + + +H   +K G +++  + N ++        GD   AR+LFD
Sbjct: 18  THPLISLLETCE-SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 76

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------------------ 226
           E P  +L  WN+++ GY   D  +    +Y +M      P+R                  
Sbjct: 77  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 136

Query: 227 ---------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                          N+    +++ ++   G +  A  +F   PK D+++W+ +IS Y +
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
              +EE+  LF+ M D +V+   V +V VLSAC+ L  ++ G  VH+      +E  + L
Sbjct: 197 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           +NA+I MY+ CGE+ +A  +F + +N D+ISW +++SG+   G ++ AR  FD M EKD 
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           VSW+ MI GY + ++F E L LF  MQ   ++PDE T+VSV++AC HL AL+ G+WI  Y
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           I +N +K +  +   LIDMY K G VD A  +F    ++   +W A+I+G A+NG  +K+
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L+MFS M K+ + P+EIT++GVL AC H GLVD+G ++F  M  +H +EPN  HYGC+VD
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LL RAG LKEA E+IE+MP+  +   WGALL  C+ + + +M E V ++++EL+PD+   
Sbjct: 497 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 556

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VLL NI+A+  RW+D+ E+R MM+ +G+ K PGCS+IE NG +HEF+AGDR+HPQ   I
Sbjct: 557 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNI 616

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
           D  LD+M + LKL GY+PD  EV  DI +E+KE ++FRHSEKLAIAFGLI   P   IRI
Sbjct: 617 DAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI 676

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR+C DCH  AK +S+ ++RE++VRDR RFHHFKHG CSC D+W
Sbjct: 677 TKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 160/564 (28%), Positives = 252/564 (44%), Gaps = 110/564 (19%)

Query: 12  STIKSSVNAKPIFKPTIN--LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI 69
           +TI ++ +A   F P  +  +S+LET    C+S  Q  Q+  Q I  GL A+    +R++
Sbjct: 2   TTIAATSSALKSFSPPTHPLISLLET----CESMDQLQQVHCQAIKKGLNANPVLQNRVM 57

Query: 70  KFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129
            F      + +  Y+ ++F  +  PN FI+NTM+R Y + + PQ  + LY  ML   V  
Sbjct: 58  TFCCTH-EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 116

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           D YT+P L +     +++  G+ +H HVLK G   +V+V+  L+ MY +CG L  AR +F
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAK-------------------------------- 217
           D  P  D+++WN I++ Y      EE++                                
Sbjct: 177 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 236

Query: 218 -------FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM---------------- 254
                  ++ N   E N++  N+MI ++   G +  A  +F+ M                
Sbjct: 237 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 296

Query: 255 ---------------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
                          P+KD VSW+A+I  Y ++  ++EAL LF NM    V  DE  +VS
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL+ACA+L  ++ G  +     +  I+  + ++NALI MY  CG++  AE +F      D
Sbjct: 357 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
             +W +MI G    G  EKA                               L +F  M  
Sbjct: 417 KFTWTAMIVGLAVNGHGEKA-------------------------------LDMFSNMLK 445

Query: 420 HGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             I PDE T + V+SACTH   +D+G K+      ++G++ N      L+D+  + G + 
Sbjct: 446 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 505

Query: 479 NALEVFHGTEEKGVS-SWNALIIG 501
            A EV      K  S  W AL+ G
Sbjct: 506 EAYEVIENMPIKANSIVWGALLAG 529


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 318/767 (41%), Positives = 453/767 (59%), Gaps = 66/767 (8%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T L  C++ +   QI SQ+I TGL    FA S+LI+F   + P  ++SY+  +F  + +P
Sbjct: 33  TLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCA-VSPHGDLSYALSLFKTIRNP 91

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N  I+N M+R       P  A+  Y  M+++    + YT+P + ++        EGK +H
Sbjct: 92  NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            HVLK G + + +V+ +LINMYA  G+L  AR +FD+S +                    
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSM-------------------- 191

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                      R+ ++  ++I  +  KG + EA  LF E+P +D+VSW+A+IS Y Q+  
Sbjct: 192 -----------RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGR 240

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANL-TVVKAGTSVHALAVKIGIECYINLQN 333
            EEA+  F  M   +V  +   ++SVLSACA   + ++ G  V +     G+   I L N
Sbjct: 241 VEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVN 300

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
            LI MY                               +KCG +E+A  LF+ + +K+VVS
Sbjct: 301 GLIDMY-------------------------------VKCGDLEEASNLFEKIQDKNVVS 329

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI GY     + E L LF  M    I P++ T +S++ AC +L ALD GKW+HAY+ 
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVD 389

Query: 454 KN--GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           KN   +K    L T+LIDMY K G +  A  +F     K +++WNA+I GFAM+G  D +
Sbjct: 390 KNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L +FS M   G  P++ITFVGVL AC+H GL+  G R+F+SMIQ++++ P   HYGCM+D
Sbjct: 450 LGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMID 509

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           L GRAG+  EAE L+++M M PD A W +LLGAC+ H   E+ E V + L EL+P++   
Sbjct: 510 LFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA 569

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VLLSNI+A  GRW+DV ++R  +    + K+PGCS IE + ++HEFL GD+ HPQ NEI
Sbjct: 570 YVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEI 629

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
             MLDE+  +L+  G+ PDT EV +D+D+E KE  L  HSEKLAIAFGLI+  P   IRI
Sbjct: 630 YKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRI 689

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           MKNLR+C +CH+A K IS+ F+REI+ RDR+RFHHFK GSCSC D+W
Sbjct: 690 MKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 227/430 (52%), Gaps = 13/430 (3%)

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN---SMIVLF---GRKGN 243
           D SP   LV  +  L    N   ++  K I++++ +  +  ++   S ++ F      G+
Sbjct: 18  DPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGD 77

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           ++ A  LFK +   + V W+ +I     +E    AL  +++MI      +E    S+  +
Sbjct: 78  LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKS 137

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C  +     G  VHA  +K+G+E    +  +LI+MY+  GE+  A  +FD     D +S+
Sbjct: 138 CTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSF 197

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            ++I+GY   G +++AR LFD +  +DVVSW+ MISGYAQ  +  E ++ F EM+   + 
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257

Query: 424 PDEATLVSVISACTHL-VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           P+ +T++SV+SAC     +L  G W+ ++I   GL  N  L   LIDMY+K G ++ A  
Sbjct: 258 PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASN 317

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F   ++K V SWN +I G+       ++L +F  M +S + PN++TF+ +L AC ++G 
Sbjct: 318 LFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGA 377

Query: 543 VDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +D G   H + +  ++   ++     +  ++D+  + G L  A+ + + M  +  +ATW 
Sbjct: 378 LDLGKWVHAYVDKNMKS--MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMN-TKSLATWN 434

Query: 600 ALLGACKKHG 609
           A++     HG
Sbjct: 435 AMISGFAMHG 444


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  600 bits (1546), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/778 (41%), Positives = 461/778 (59%), Gaps = 74/778 (9%)

Query: 32  ILETH-----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           +LE H     L KC       QI S +I +GL    FA S+LI+F   L P  ++SY+  
Sbjct: 22  LLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCA-LSPSRDLSYALS 80

Query: 87  IFAFL--ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +F  +  + PN FI+NT++RA+     P  ++ L+  ML++ +  +++T+P L ++ A  
Sbjct: 81  LFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKS 140

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +  E K +H H LK       +V+ +LI+MY+  G+L  AR +FD+S +          
Sbjct: 141 KATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTL---------- 190

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                R+ ++  ++I  +  +G+V +A RLF E+P KD+VSW+A
Sbjct: 191 ---------------------RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNA 229

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+ Y Q+  +EEAL  F  M +  V  ++  +VSVLSAC +L  ++ G  + +     G
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRG 289

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + L NAL+ MYS                               KCG +  AR LFD
Sbjct: 290 FGKNLQLVNALVDMYS-------------------------------KCGEIGTARKLFD 318

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M +KDV+ W+TMI GY     + E L LF  M    + P++ T ++V+ AC  L ALD 
Sbjct: 319 GMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 445 GKWIHAYIRKN----GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           GKW+HAYI KN    G   N  L T++I MY K GCV+ A +VF     + ++SWNA+I 
Sbjct: 379 GKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G AMNG A+++L +F EM   G  P++ITFVGVL AC   G V+ GHR+F+SM +++ + 
Sbjct: 439 GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGIS 498

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P  +HYGCM+DLL R+G   EA+ L+ +M M PD A WG+LL AC+ HG  E GE V  +
Sbjct: 499 PKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAER 558

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L EL+P++ G +VLLSNI+A  GRWDDV ++R  +  +G+ K+PGC+ IE +G++HEFL 
Sbjct: 559 LFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLV 618

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GD+ HPQ   I  MLDE+ + L+  G+ PDT EV +D+D+E KE  L +HSEKLAIAFGL
Sbjct: 619 GDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGL 678

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+  P + IRI+KNLR+C +CH+A K IS+ F+REI+ RDR+RFHHFK G CSC D W
Sbjct: 679 ISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/764 (39%), Positives = 460/764 (60%), Gaps = 64/764 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I +QMI TGL    +A S+L++       F  + Y+  +F  ++ PN 
Sbjct: 40  LHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNL 99

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  A+ LY  M++  +  ++YT+P L ++ A   +  EG+ IH H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGH 159

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G+D D++V+ +LI++Y                               V    +E+A
Sbjct: 160 VLKLGYDLDLFVHTSLISVY-------------------------------VQNGRLEDA 188

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + ++++ P R++++  ++I  +  +G +  A +LF E+P KD+VSW+A+IS Y +   Y+
Sbjct: 189 RKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+   +  DE  +V+V+SACA    ++ G  VH+     G            
Sbjct: 249 EALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGF----------- 297

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                             G NL ++  NS++  Y KCG +E A  LF+ ++ KDV+SW+T
Sbjct: 298 ------------------GSNLKIV--NSLMDLYSKCGELETACGLFEGLLYKDVISWNT 337

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RK 454
           +I GY   + + E L LF EM   G RP++ T++S++ AC HL A+D G+WIH YI  R 
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
                 S L T+LIDMY K G ++ A +VF+    K +SSWNA+I GFAM+G AD + ++
Sbjct: 398 KSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDI 457

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K G+ P++ITFVG+L AC   G++D G   F +M Q++++ P  +HYGCM+DLLG
Sbjct: 458 FSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLG 517

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
            +G+ KEAEE+I +M M PD   W +LL ACK  G+ E+GE   + L++++P++ G +VL
Sbjct: 518 HSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVL 577

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+ GRW++V ++R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 578 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 638 LEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 697

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 698 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 307/760 (40%), Positives = 454/760 (59%), Gaps = 64/760 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I ++MI TGL    +A S+LI+FS     F  ++Y+  +F  ++ PN 
Sbjct: 9   LHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNL 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  A+ LY  M++  +  ++YT+P L +A A   +  EG+ IH H
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGH 128

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G D D+YV+ +LI M                               YV     E+A
Sbjct: 129 VLKLGCDLDLYVHTSLIAM-------------------------------YVKNGRXEDA 157

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + ++++   R++++  ++I  +   G +  A ++F E+P KD+VSW+ALIS Y +   Y+
Sbjct: 158 RKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYK 217

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+   V  DE  +V+VLSACA    ++ G  VH+     G            
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGF----------- 266

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                             G NL ++  N++I  Y+KCG VE A  LF+ +  KDV+SW+T
Sbjct: 267 ------------------GSNLKIV--NALIDLYIKCGEVETASGLFEGLSYKDVISWNT 306

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RK 454
           +I GY   + + E L LF EM   G  P+E T++S++ AC HL A+D G+WIH YI  R 
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRL 366

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+   S L T+LIDMY K G ++ A +VF     + +SSWNA+I GFAM+G A+ + ++
Sbjct: 367 KGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDI 426

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K G+ P++ITFVG+L AC H G++D G   F SM +++++ P  +HYGCM+DLLG
Sbjct: 427 FSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLG 486

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
            +G+ KEAEE+I SM M PD   W +LL ACK HG+ E+GE   + L++++P + G +VL
Sbjct: 487 HSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVL 546

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+ GRW++V + R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 547 LSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGM 606

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 607 LEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           LR+C +CH A K IS+ + REI+ RDR RFHHF  G CSC
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 308/764 (40%), Positives = 454/764 (59%), Gaps = 64/764 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I +QMI TGL    +A SRL++F      F  + Y+  +F  ++ PN 
Sbjct: 9   LHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNL 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  AI LY  M++  +  ++YT+P L ++ A      EG+ IH H
Sbjct: 69  LIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGH 128

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G++ D+YV+ +LI+MY   G    A K+FD S   D+VS+ +++ G          
Sbjct: 129 VLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITG---------- 178

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                                +  +G +  A ++F E+P KD+VSW+A+IS Y      +
Sbjct: 179 ---------------------YASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNK 217

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+   V  DE  +V+V+SACA    ++ G  VH+     G+   + + NALI
Sbjct: 218 EALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALI 277

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +YS                               KCG VE A  LF  +  KDV+SW+T
Sbjct: 278 DLYS-------------------------------KCGEVETACGLFQGLSNKDVISWNT 306

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-- 454
           MI GY   + + E L LF EM   G  P++ T++S++ AC  L A+D G+WIH YI K  
Sbjct: 307 MIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRI 366

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+   S L T+LIDMY K G ++ A +VF+    + +S+ NA+I GFAM+G A+ + ++
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDI 426

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K+G+ P++ITFVG+L AC H G++D G R F SM Q +++ P  +HYGCM+DLLG
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLG 486

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
             G+ KEAEE+I +M M PD   W +LL ACK HG+ E+GE   +KL++++P++ G +VL
Sbjct: 487 HLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVL 546

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+ GRW++V  +R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 547 LSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 606

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E K+  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 607 LEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 319/777 (41%), Positives = 461/777 (59%), Gaps = 73/777 (9%)

Query: 32  ILETH-----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           ILE H     L+KC++   F QI S +I TGL    F  S+LI F   + P  ++SY+  
Sbjct: 25  ILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCA-VSPSGDLSYALS 83

Query: 87  IFAFLESP---NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           +F   +     N FI+N+++R Y   + P  ++ L+  ML   V  +++T+P L ++   
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTK 143

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             +  EGK +H H LK     + +V+ ++I+MYA  G++  AR +FD+S +         
Sbjct: 144 AKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSL--------- 194

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                                 R+ ++  ++I  +  +G + +A RLF E+P KD+VSW+
Sbjct: 195 ----------------------RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWN 232

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+IS Y Q+  +EEA+V F  M +  V+ ++  +V VLSAC +    + G  + +     
Sbjct: 233 AMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDN 292

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G    + L NALI MY                                KCG  + AR LF
Sbjct: 293 GFGSNLQLTNALIDMYC-------------------------------KCGETDIARELF 321

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
           D + EKDV+SW+TMI GY+    + E L+LF  M    ++P++ T + ++ AC  L ALD
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALD 381

Query: 444 QGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
            GKW+HAYI KN     N+ L T+LIDMY K GC++ A  VF     + ++SWNA++ GF
Sbjct: 382 LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGF 441

Query: 503 AMNGLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           AM+G A+++L +FSEM   G+  P++ITFVGVL AC   GLVD GH++F SMIQ++ + P
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HYGCM+DLL RA   +EAE L+++M M PD A WG+LL ACK HG  E GE V  +L
Sbjct: 502 KLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERL 561

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            +L+P++ G  VLLSNI+A  GRWDDV  +R  +  +G+ K+PGC+ IE +G +HEFL G
Sbjct: 562 FQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVG 621

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D+ HP+ N I  ML+E+ K L+  G+ P+T EV +D+D+E KE  L +HSEKLAI+FGLI
Sbjct: 622 DKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLI 681

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              P   IRI+KNLR+C +CH+A K IS+ F+REI+ RDR+RFHHFK G CSC D W
Sbjct: 682 KTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 242/459 (52%), Gaps = 16/459 (3%)

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF---GRKGN 243
           K+ ++ P L+L      L    N +  ++   +  K    N +   S ++ F      G+
Sbjct: 24  KILEQHPYLNL------LEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGD 77

Query: 244 VAEACRLFKEMP---KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           ++ A  LF+E     K ++  W++LI  Y  +     +L LF  M+ + V  +      +
Sbjct: 78  LSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFL 137

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
             +C        G  +HA A+K+ +    ++  ++IHMY+S GE+  A  +FD     D 
Sbjct: 138 FKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDA 197

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +S+ ++I+GY+  G ++ AR LFD +  KDVVSW+ MISGY Q  +F E +  F EMQ  
Sbjct: 198 VSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEA 257

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            + P+++T+V V+SAC H  + + GKWI +++R NG   N  L   LIDMY K G  D A
Sbjct: 258 NVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIA 317

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            E+F G EEK V SWN +I G++   L +++L +F  M +S V PN++TF+G+L AC  +
Sbjct: 318 RELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACL 377

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           G +D G      + +  R   N+  +  ++D+  + G ++ AE +  SM  S ++A+W A
Sbjct: 378 GALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNLASWNA 436

Query: 601 LLGACKKHGDHEMGERVGRKLVE---LQPDHDGFHVLLS 636
           +L     HG  E    +  ++V     +PD   F  +LS
Sbjct: 437 MLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLS 475


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/723 (41%), Positives = 442/723 (61%), Gaps = 60/723 (8%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F  + Y+  +F  ++ PN  I+NTM+R +   + P  A+ +Y  M++     ++Y++P L
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            ++ A   +  EG+ IH  VLK G   D YV+ +LI+MYA  G L  ARK          
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK---------- 120

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                                +++    R++++  ++I  +  +G+   A ++F E+ ++
Sbjct: 121 ---------------------VFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITER 159

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D+VSW+A+I+ Y +N  YEEAL LF  M+   V  DE  +VSV+SACA    ++ G  VH
Sbjct: 160 DVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVH 219

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +              +   H +SS  +I                  N++I  Y KCG VE
Sbjct: 220 SWVD----------DDDDDHGFSSSLKIV-----------------NALIDLYSKCGDVE 252

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            A  LF+ +  KDVVSW+T+I GY   + + E L LF EM   G  P++ TL+SV+ AC 
Sbjct: 253 TAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312

Query: 438 HLVALDQGKWIHAYIRKN--GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           HL A+D G+WIH YI K   G+   + L T+LIDMY K G ++ A +VF+    + +SSW
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSW 372

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           NA+I GFAM+G A+ + ++FS M+ + V P++ITFVG+L AC H GL+D G + F SM Q
Sbjct: 373 NAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ 432

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           ++ L P  +HYGCM+DLLG +G+ KEAEE+I +MPM PD   W +LL ACKKHG+ E+ E
Sbjct: 433 DYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAE 492

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
              +KL++++P++ G +VLLSNI+A+ GRW+DV  VRG++  +G+ K+PGCS IE + ++
Sbjct: 493 SFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVV 552

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           HEF+ GD+ HP+  EI +ML+EM  +L+  G+APDT EV  ++++E KE  L  HSEKLA
Sbjct: 553 HEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLA 612

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFGLI+  P   + I+KNLR+C +CH A K IS+ + REIV RDR RFHHF+ G CSC 
Sbjct: 613 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCC 672

Query: 796 DFW 798
           D+W
Sbjct: 673 DYW 675


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/735 (40%), Positives = 444/735 (60%), Gaps = 64/735 (8%)

Query: 66  SRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           S+L++F      F    Y+  +FA ++ PN  I+NTM+R Y   + P  A+ LY +M++ 
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
            +  ++YT+P L ++ A   +  EG+ IH HVLK G++ D+YV+ +LI+MYA  G L   
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRL--- 117

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVA 245
                                       E+A  ++++   R++++  ++I  +   GN+ 
Sbjct: 118 ----------------------------EDAHKVFDRSSHRDVVSYTALITGYASSGNIR 149

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A  +F E+P KD+VSW+A+IS Y +   Y+EAL LF  M+   V  DE  +V+VLSACA
Sbjct: 150 SAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACA 209

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
               V+ G  VH+     G    + + NALI +YS                         
Sbjct: 210 QSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYS------------------------- 244

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
                 KCG VE A  LF+ +  KDVVSW+T+I GY   + + E L LF EM   G  P+
Sbjct: 245 ------KCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI--LGTTLIDMYMKLGCVDNALEV 483
           + T+VS++ AC HL A+D G+WIH YI K    + +   L T+LIDMY K G ++ A +V
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F+    K +SSWNA+I GFAM+G A+   ++FS M+K+G+ P++ITFVG+L AC H G +
Sbjct: 359 FNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKL 418

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           D G   F SM Q++ + P  +HYGCM+DLLG +G+ KEA+E+I++MPM PD   W +LL 
Sbjct: 419 DLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLK 478

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC++HG+ E+ E   R L++++P++ G +VLLSNI+A+ G WD+V +VR ++  +G+ K+
Sbjct: 479 ACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKV 538

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PGCS IE +  +HEF+ GD+ HP+  EI  ML+EM   L+  G+ PDT EV  ++++E K
Sbjct: 539 PGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWK 598

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSEKLAIAFGLI+  P   + I+KNLR+C +CH A K +S+ + REI+ RDR R
Sbjct: 599 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTR 658

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF+ G CSC DFW
Sbjct: 659 FHHFRDGVCSCNDFW 673


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/842 (36%), Positives = 477/842 (56%), Gaps = 54/842 (6%)

Query: 9   HLSSTIKSSVNAKPIFKPTIN-LSILETH-------LQKCQSFKQFTQILSQMILTGLIA 60
           HLS+ I ++  +  +  P  N L IL  H        +KC++  +  Q+ SQ+   GL  
Sbjct: 6   HLSTLIPATPTSVAL--PNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNH 63

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG-----FIFNTMMRAYIQRNVPQQA 115
              + + LI   T++  F  + Y+ K        NG     ++F++++R +    +  +A
Sbjct: 64  HPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKA 123

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           I +++ ++      DN+T+P +  A     ++ EG  +H  ++K GF+ D++V N+LI+ 
Sbjct: 124 IVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHF 183

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----------- 224
           Y  CG++   R++FD+    ++VSW S++ GY      +EA  ++ +M            
Sbjct: 184 YGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTM 243

Query: 225 ----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                                       E N +  N+++ ++ + G + +A ++F E   
Sbjct: 244 VGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVD 303

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           K+LV ++ ++S Y +  +  E L +   M+ H    D + ++S +SAC+ L  V  G   
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWC 363

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H   ++ G+E + N+ NA+I+MY  CG+   A ++FD   N   +SWNS+I+G+++ G +
Sbjct: 364 HGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDM 423

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           E A  +F AM + D+VSW+TMI    Q   F E + LF  MQ  GI  D+ T+V V SAC
Sbjct: 424 ESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC 483

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            +L ALD  KWIH YI+K  +  +  LGT L+DM+ + G   +A++VF+   ++ VS+W 
Sbjct: 484 GYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWT 543

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A I   AM G    ++E+F EM + G+ P+ + FV +L A  H GLV++G   F SM   
Sbjct: 544 AAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDI 603

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + + P + HYGCMVDLLGRAG+L EA  LI SM M P+   WG+LL AC+ H + ++   
Sbjct: 604 YGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAY 663

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              ++ EL P+  G HVLLSNI+AS GRWDDV +VR  +  +G  K+PG S IE NG I 
Sbjct: 664 AAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIF 723

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           EF  GD +HP++  I+ ML E+  +L+  GY PD   V  D++++EKE  L RHSEKLAI
Sbjct: 724 EFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAI 783

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AF LI+     PIR+ KNLRIC+DCH+ AK +S+++ REI+VRD +RFH F+ G CSC D
Sbjct: 784 AFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGD 843

Query: 797 FW 798
           +W
Sbjct: 844 YW 845


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/558 (50%), Positives = 378/558 (67%), Gaps = 1/558 (0%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A  LF  + K D+   + LI  Y  +    +A+V +  M +  V+  +V    +L
Sbjct: 83  GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLL 142

Query: 302 -SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
             AC+ +  ++ G ++H+   K+G    +++ N L+ MY+SCG I +A  +FD     D 
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
            SWN MI GYLKCG  + AR +F+AM ++DVVSWS MI+GY Q  +F E L LF +M   
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE 262

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            I P+E+ LV+ +SAC HL A++QG+WI  Y+ +  +++   LGT LIDMY K G V+ A
Sbjct: 263 KIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERA 322

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           LEVFH  +EK V +W+A+I G A+NG    +L +FS+M+  GV PNE+TF+G+L AC H 
Sbjct: 323 LEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHS 382

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            LVDEG   F+SM   + L+PN+ H+ CMVDL GRAGML +A+ +I+SMP  P+ A WGA
Sbjct: 383 KLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGA 442

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL AC+ HGD E+GE+VG++L+EL P+H G +VLLSNI+A+ GRWD V E+R MM  R V
Sbjct: 443 LLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQV 502

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K PGCS I+    IHEF+AGD +HPQ+  I   L EM+++LK  GY PDT +V  D+D+
Sbjct: 503 SKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDE 562

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEKET L  HSEKLAIAFGLI   P   IRI KNLR+C DCH+A K IS+ ++REI+VRD
Sbjct: 563 EEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRD 622

Query: 781 RHRFHHFKHGSCSCMDFW 798
           R RFHHF+ GSCSCMDFW
Sbjct: 623 RCRFHHFRDGSCSCMDFW 640



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 162/566 (28%), Positives = 274/566 (48%), Gaps = 85/566 (15%)

Query: 19  NAKPIFKPTINL----SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           N  P + PT  L     IL  HL  C++ K  TQI +Q I TG+ +D F ASR++ F+  
Sbjct: 21  NQNPPWIPTPQLLCKYPILR-HLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAA- 78

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYT 133
           L P   + Y+  +F  +  P+ FI NT++RAY     P  A+  Y  M  ++V   D +T
Sbjct: 79  LSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHT 138

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           +PLL +A +   S+  G+ IH HV K G+ S+V V+N L+ MYA CG + +A  +FD +P
Sbjct: 139 FPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTP 198

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
             D  SWN ++ GY+     + A+ ++  MP+R+++                        
Sbjct: 199 ECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVV------------------------ 234

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
                  SWS +I+ Y Q   ++E L LF +M+  ++  +E V+V+ LSACA+L  ++ G
Sbjct: 235 -------SWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +     +  +   + L  ALI MYS CG +  A ++F      ++++W++M       
Sbjct: 288 QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAM------- 340

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                                   I+G A + Q  + L+LF +M+  G++P+E T + ++
Sbjct: 341 ------------------------INGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGIL 376

Query: 434 SACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +AC+H   +D+G  + H+     GLK N+     ++D+Y + G +D A  V      K  
Sbjct: 377 NACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPN 436

Query: 493 SS-WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE----ITFVGVLGACRHMGLVDEGH 547
           S+ W AL+    ++G  +   ++   + +  + PN     +    +  AC     V E  
Sbjct: 437 SAIWGALLNACRIHGDTELGEQVGKRLLE--LDPNHGGRYVLLSNIYAACGRWDRVAELR 494

Query: 548 RHFNSMIQEHRLEPNSKHYGC-MVDL 572
           R    M++E ++   SK  GC  +DL
Sbjct: 495 R----MMRERQV---SKTPGCSFIDL 513


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/834 (37%), Positives = 482/834 (57%), Gaps = 48/834 (5%)

Query: 7   LAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAAS 66
           LA  ++T  S +N     K T       + L+ C++  +       +   GL  D    +
Sbjct: 15  LATTTTTKPSLLNQSKCTKAT------PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           +L+  S +L     +S++ ++F   ES    F++N+++R Y    +  +AI L+  M+N+
Sbjct: 69  KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
            +  D YT+P    A A   +   G  IH  ++K G+  D++V N+L++ YA CG+L +A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEA----------------------------- 216
           RK+FDE    ++VSW S++ GY   D  ++A                             
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248

Query: 217 -----------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                       FI N   E N +  ++++ ++ +   +  A RLF E    +L   +A+
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
            S Y +  +  EAL +F  M+D  V  D + ++S +S+C+ L  +  G S H   ++ G 
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           E + N+ NALI MY  C    TA ++FD   N  +++WNS+++GY++ G V+ A   F+ 
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQ 444
           M EK++VSW+T+ISG  Q   F E + +F  MQ   G+  D  T++S+ SAC HL ALD 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            KWI+ YI KNG++++  LGTTL+DM+ + G  ++A+ +F+    + VS+W A I   AM
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A++++E+F +M + G+ P+ + FVG L AC H GLV +G   F SM++ H + P   
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG+L+EA +LIE MPM P+   W +LL AC+  G+ EM      K+  L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P+  G +VLLSN++AS GRW+D+ +VR  M  +G+ K PG S I+  G  HEF +GD +
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP++  I+ MLDE++++    G+ PD   V  D+D++EK   L RHSEKLA+A+GLI+ +
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               IRI+KNLR+C+DCH+ AKF S+ ++REI++RD +RFH+ + G CSC DFW
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  580 bits (1495), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/751 (40%), Positives = 444/751 (59%), Gaps = 65/751 (8%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +QM+ TGL    +A S+L++       F  + Y+  +F   + PN  I+NTM+R     +
Sbjct: 3   AQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSS 62

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
                + +Y  M++     + YT+P L ++ A   +  EG+ IH  V+K G + D Y + 
Sbjct: 63  DLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHT 122

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA 230
           +LI+MYA  G L                               E+A+ +++   +R++++
Sbjct: 123 SLISMYARNGRL-------------------------------EDARKVFDXSSQRDVVS 151

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
             ++I  +  +G+V  A ++F  + ++D+VSW+A+I+ Y +N  YEEAL LF  M+   V
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAE 349
             DE  +VSVLSACA    ++ G  +H L     G    + + NA I +YS         
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYS--------- 262

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                                 KCG VE A  LF+ +  KDVVSW+T+I GY   + + E
Sbjct: 263 ----------------------KCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RKNGLKINSILGTTL 467
            L LF EM   G  P++ T++SV+ AC HL A+D G+WIH YI  R  G+   S L T+L
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G ++ A +VF+    K +SSWNA+I GFAM+G A+ + ++FS M+K+G+ P++
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           IT VG+L AC H GL+D G   F S+ Q++ + P  +HYGCM+DLLG AG+ KEAEE+I 
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MPM PD   W +LL ACK HG+ E+ E   +KL+E++P++ G +VLLSNI+A+ GRW+D
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWED 540

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  +R ++  +G+ K+PGCS IE + ++HEF+ GD+ HPQ  EI  ML+EM   L+  G+
Sbjct: 541 VARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGF 600

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + ++KNLR+C +CH A K 
Sbjct: 601 VPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKL 660

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+ + REIV RDR RFHHF+ G CSC D+W
Sbjct: 661 ISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/764 (40%), Positives = 454/764 (59%), Gaps = 64/764 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I +QMI  GL    +A S+LI+F      F  + Y+  +F  ++ PN 
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  A+ LY  M++  +  ++YT+P + ++ A   +  EG+ IH H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G D D+YV+ +LI+MY   G L  A K+FD+SP  D+VS+ +++ GY +   +E A
Sbjct: 160 VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + +++++P +++++ N+MI  +   GN  EA  LFK+M K +                  
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN------------------ 261

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
                        V  DE  +V+V+SACA    ++ G  VH      G    + + NALI
Sbjct: 262 -------------VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +YS CGE+ TA  LF+     D+ISWN++I G                           
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGG--------------------------- 341

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RK 454
               Y   + + E L LF EM   G  P++ T++S++ AC HL A+D G+WIH YI  R 
Sbjct: 342 ----YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+   S L T+LIDMY K G ++ A +VF+    K +SSWNA+I GFAM+G AD S ++
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K G+ P++ITFVG+L AC H G++D G   F +M Q++++ P  +HYGCM+DLLG
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLG 517

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
            +G+ KEAEE+I  M M PD   W +LL ACK HG+ E+GE     L++++P++ G +VL
Sbjct: 518 HSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVL 577

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+AS GRW++V + R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 578 LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 638 LEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 697

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 698 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/764 (39%), Positives = 454/764 (59%), Gaps = 64/764 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I +QMI TGL    +A S+L++       F  + Y+  +F  ++ P  
Sbjct: 9   LHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXL 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  A+ LY  M++  +  ++YT+P L ++ A   +  EG+ +H  
Sbjct: 69  LIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQ 128

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK GFD D+Y++ +LI+MY   G L                               E+A
Sbjct: 129 VLKFGFDLDLYIHTSLISMYVQNGRL-------------------------------EDA 157

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + + +K   R++++  ++I  +  +G +  A ++F E+P KD+VSW+A IS Y +   Y+
Sbjct: 158 QKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYK 217

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+   V  DE  +V+VLSACA    ++ G  VH+     G    + + NALI
Sbjct: 218 EALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALI 277

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +YS                               KCG +E A  LF  +  KDV+SW+T
Sbjct: 278 DLYS-------------------------------KCGELETACGLFQGLSNKDVISWNT 306

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RK 454
           +I GY   + + E L LF +M   G +P++ T++S++SAC HL A+D G+WIH YI  R 
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+   S L T+LIDMY K G ++ A +VF     + +SSWNA+I GFAM+G A+ + ++
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDI 426

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K+G+ P++ITFVG+L AC H G++D G   F SM ++++L P  +HYGCM+DL G
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXG 486

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
            +G+ KEAE++I +M M PD   W +LL ACK HG+ E+GE   + L++++P++ G +VL
Sbjct: 487 HSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVL 546

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+  RW++V + R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 547 LSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 606

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 607 LEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 303/741 (40%), Positives = 439/741 (59%), Gaps = 64/741 (8%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           I  GL    +A S+L+ F      F  + Y+  +F  ++ PN   +NTM+R +   + P 
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
            A+ LY  M++  +  ++YT+P L ++ A   +  EGK IH  +LK G   D++V+ +LI
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           +MYA  G                                VE+A  +++    R++++  +
Sbjct: 121 SMYAQNGI-------------------------------VEDAHKVFDTSSHRDVVSYTA 149

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           MI  +  +GN+ +A ++F E+P KD+VSW+A+IS Y +   Y+EAL LF  M+   V  D
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPD 209

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E  + +VLS C +   V+ G  +H+     G    + L NALI +YS             
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYS------------- 256

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             KCG +E+A  LF+ +  KDV+SW+T+I GYA  +   E L +
Sbjct: 257 ------------------KCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLV 298

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN--GLKINSILGTTLIDMY 471
           F EM   G  P++ T++S++ AC HL A+D G+WIH YI K   G+  N+ L T+LIDMY
Sbjct: 299 FQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMY 358

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G ++ A +VF     K +SS NA+I GFAM+G AD + ++ S MKK G+ P++ITFV
Sbjct: 359 AKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFV 418

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G+L AC H GL D G + F SM  ++R+EP  +HYGCM+DLLGR+G+ KEAEELI SM M
Sbjct: 419 GLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTM 478

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD   WG+LL ACK H + E+GE + +KL++++P + G +VLLSNI+A+  RWDDV  V
Sbjct: 479 EPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARV 538

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R ++  +G+ K+PGCS IE + ++HEFL GD+ HPQ  EI  ML+E+   L   G+  DT
Sbjct: 539 RTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDT 598

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            EV  ++++E KE  L  HSEKLAIAFGLI+  P   +RI+KNLR+C +CH A K IS+ 
Sbjct: 599 SEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKI 658

Query: 772 FDREIVVRDRHRFHHFKHGSC 792
           + REI+ RDR RFHHFK G C
Sbjct: 659 YKREIIARDRSRFHHFKDGMC 679


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/764 (39%), Positives = 453/764 (59%), Gaps = 64/764 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C++ +    I +QMI TGL    +A S+LI+F      F  + Y+  +F  ++ PN 
Sbjct: 9   LHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNL 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            I+NTM R +   + P  A+ LY  M++  +  + YT+P L ++ A   +  EG+ IH H
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGH 128

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G+D D+YV+ +LI+MY   G L                               E+A
Sbjct: 129 VLKLGYDLDLYVHTSLISMYVQNGRL-------------------------------EDA 157

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + ++++   R++++  ++I  +  KG +A A ++F E+P KD+VSW+A+IS Y +    +
Sbjct: 158 RKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 217

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+   V  DE  +VSV+SACA    ++ G  VH+     G    + + NALI
Sbjct: 218 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +Y  CGE+ TA  LF+     D+ISWN++I G                           
Sbjct: 278 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGG--------------------------- 310

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-- 454
               Y   + + E L LF EM   G  P++ T++S++ AC HL A++ G+WIH YI K  
Sbjct: 311 ----YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL 366

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+   S   T+LIDMY K G ++ A +VF     + +SSWNA+I GFAM+G A+ + ++
Sbjct: 367 KGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDI 426

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS M+K+ + P++ITFVG+L AC H G++D G   F SM +++++ P  +HYGCM+DLLG
Sbjct: 427 FSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLG 486

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
            +G+ KEAEE+I +M M PD   W +LL ACK + + E+GE   + L++++P + G +VL
Sbjct: 487 HSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVL 546

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+ GRW++V ++R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  M
Sbjct: 547 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 606

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KN
Sbjct: 607 LEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 666

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C +CH A K IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 667 LRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 308/833 (36%), Positives = 481/833 (57%), Gaps = 48/833 (5%)

Query: 7   LAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAAS 66
           LA  ++T  S +N     K T       + L+ C++  +       +   GL  D    +
Sbjct: 15  LATTTTTKPSLLNQSKCTKAT------PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           +L+  S +L     +S++ ++F   ES    F++N+++R Y    +  +AI L+  M+N+
Sbjct: 69  KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
            +  D YT+P    A A   +   G  IH  ++K G+  D++V N+L++ YA CG+L +A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEA----------------------------- 216
           RK+FDE    ++VSW S++ GY   D  ++A                             
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248

Query: 217 -----------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                       FI N   E N +  ++++ ++ +   +  A RLF E    +L   +A+
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
            S Y +  +  EAL +F  M+D  V  D + ++S +S+C+ L  +  G S H   ++ G 
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           E + N+ NALI MY  C    TA ++FD   N  +++WNS+++GY++ G V+ A   F+ 
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQ 444
           M EK++VSW+T+ISG  Q   F E + +F  MQ   G+  D  T++S+ SAC HL ALD 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            KWI+ YI KNG++++  LGTTL+DM+ + G  ++A+ +F+    + VS+W A I   AM
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A++++E+F +M + G+ P+ + FVG L AC H GLV +G   F SM++ H + P   
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG+L+EA +LIE MPM P+   W +LL AC+  G+ EM      K+  L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P+  G +VLLSN++AS GRW+D+ +VR  M  +G+ K PG S I+  G  HEF +GD +
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDES 728

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP++  I+ MLDE++++    G+ PD   V  D+D++EK   L RHSEKLA+A+GLI+ +
Sbjct: 729 HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSN 788

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
               IRI+KNLR+C+DCH+ AKF S+ ++REI++RD +RFH+ + G CSC DF
Sbjct: 789 KGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/723 (40%), Positives = 437/723 (60%), Gaps = 64/723 (8%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F  + Y+  +F  ++ PN  I+NTM+R +   + P  ++ LY  M++  +  ++YT+P L
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            ++ A   +  EG+ IH  VLK GFD D+YV+ +LI+MY                    +
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMY--------------------V 110

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
            +W            +E+A  ++++   R++++  ++I  +  +G++  A +LF E+P K
Sbjct: 111 QNWR-----------LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVK 159

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D+VSW+A+IS Y +   Y+EAL LF  M+   V  DE   V+VLSACA+   ++ G  VH
Sbjct: 160 DVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVH 219

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +     G +  + + NALI +YS                               KCG VE
Sbjct: 220 SWVDDHGFDSNLKIVNALIDLYS-------------------------------KCGEVE 248

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            A  LF  +  KDV+SW+T+I GY   + + E L LF EM   G  P++ T++SV+ AC 
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 438 HLVALDQGKWIHAYI--RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           HL A+D G+WIH YI  R  G+   S L T+LIDMY K G ++ A +VF+    K +SSW
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           NA+I GFAM+G AD S ++FS M+K G+ P++ITFVG+L AC H G++D G   F SM Q
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           ++++ P  +HYGCM+DLLG +G+ KEAEE+I +M M PD   W +LL ACK HG+ E+ E
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
              + L++++P++   ++LLSNI+AS GRW+DV  +R ++  + + K+PGCS IE + ++
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVV 548

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
            EF+ GD+ HPQ  EI  ML+EM   L+  G+ PDT EV  ++++E KE  L  HSEKLA
Sbjct: 549 FEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 608

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFGLI+  P   + I+KNLR+C +CH A K +S+ + REIV RDR RFHHF+ G CSC 
Sbjct: 609 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCN 668

Query: 796 DFW 798
           D+W
Sbjct: 669 DYW 671


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/752 (39%), Positives = 449/752 (59%), Gaps = 64/752 (8%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I +QMI TGL    +A S+LI+F      F  + Y+  +F  ++ PN  I+NTM R +  
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
            + P  A+ LY  M++  +  + YT+P L ++ A   +  EG+ IH HVLK G+D D+YV
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           + +LI+MY   G L                               E+A+ ++++   R++
Sbjct: 126 HTSLISMYVQNGRL-------------------------------EDARKVFDQSSHRDV 154

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++  ++I  +  KG +A A ++F E+P KD+VSW+A+IS Y +    +EAL LF  M+  
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  DE  +VSV+SACA    ++ G  VH+     G    + + NALI +Y  CGE+ TA
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
             LF+     D+ISWN++I G                               Y   + + 
Sbjct: 275 CGLFEGLSYKDVISWNTLIGG-------------------------------YTHMNLYK 303

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK--NGLKINSILGTT 466
           E L LF EM   G  P++ T++S++ AC HL A++ G+WIH YI K   G+   S   T+
Sbjct: 304 EALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G ++ A +VF     + +SSWNA+I GFAM+G A+ + ++FS M+K+ + P+
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           +ITFVG+L AC H G++D G   F SM +++++ P  +HYGCM+DLLG +G+ KEAEE+I
Sbjct: 424 DITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI 483

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            +M M PD   W +LL ACK HG+ E+GE   + L++++P + G +VLLSNI+A+ GRW+
Sbjct: 484 NTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWN 543

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V ++R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  ML+EM   L+  G
Sbjct: 544 EVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAG 603

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           + PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KNLR+C +CH A K
Sbjct: 604 FVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATK 663

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+ + REI+ RDR RFHHF+ G CSC D+W
Sbjct: 664 LISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/817 (36%), Positives = 459/817 (56%), Gaps = 45/817 (5%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           P    S L   L+ C++  Q  Q+  Q+   GL       ++L+    ++     + Y+ 
Sbjct: 21  PMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 86  KIFAFLE----SPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           K F   +    S +  F+ N+++R Y    + ++AI LY  ML   V  ++YT+P +   
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +  EG  +H  V+K G + DV++ N LI+ YA CG +    K+F+     ++VSW
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------------------- 231
            S++ GY   D  +EA  ++ +M E  I  S                             
Sbjct: 201 TSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGE 260

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                     N+++ ++ + G +  A RLF E   ++LV ++ ++S Y +  +  EAL +
Sbjct: 261 LGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAI 320

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
              M+      D V ++S +SA A L  +  G   H   ++ G+E + ++ N +I MY  
Sbjct: 321 LDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMK 380

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG+   A ++FD   N  ++SWNS+ +G+++ G VE A  +F+ + E++ V W+TMISG 
Sbjct: 381 CGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGL 440

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
            Q   F + + LF EMQ  GI+ D  T++ + SAC +L A +  KW+H YI KNG+  + 
Sbjct: 441 VQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDM 500

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            L T L+DM+ + G   +A++VF+   E+ VS+W A I   AM G  + +  +F++M   
Sbjct: 501 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 560

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           GV P+ + FV VL AC H G V++G  H  S++++H + P  +HYGCMVDLLGRAG+L+E
Sbjct: 561 GVKPDVVLFVQVLTACSHGGQVEQG-LHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLRE 619

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A +LI+SMPM P+   WG+LL AC+ H + EM      ++ EL P   G HVLLSNI+AS
Sbjct: 620 AFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYAS 679

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
            G+W DV  VR  +  +GV K+PG S ++ NG+IHEF +GD +HP++  I  ML EM  +
Sbjct: 680 AGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCR 739

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
               G+ PD   V  D+D++EKE  L RHSEKLAIAFGLI      PIR++KNLR+C+DC
Sbjct: 740 FSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDC 799

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H+ AK  S  ++REI+VRD +RFH F+ G CSC D+W
Sbjct: 800 HSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836


>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/463 (63%), Positives = 353/463 (76%), Gaps = 34/463 (7%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           MMRA++QRN P   + +YK ML  NV  DN+TYP+L Q+ +LR++ F+GKLIH HVLK  
Sbjct: 1   MMRAFVQRNYPYYCMDMYKWMLQENVEPDNFTYPILLQSCSLRVAKFDGKLIHCHVLKMS 60

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F+ DVYV NTLIN+Y+VC +L  ARK                               +++
Sbjct: 61  FNFDVYVQNTLINLYSVCQNLGDARK-------------------------------VFD 89

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           + P  ++++ NS++     KG+V EA RLF EM KKDLVSWSALIS YEQN  YEEALV 
Sbjct: 90  ESPVLDLVSWNSIL---AGKGDVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVT 146

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M  + +MVDEVVVVSVLSACA+L  VK G  VH+LAVKIGIE Y+NLQNALIHMYSS
Sbjct: 147 FGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALIHMYSS 206

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           C EI +A+KLF+ G++LD ISWNSMISGYLKCG +EKA+ALFD M +KD+VSWS MISGY
Sbjct: 207 CREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGY 266

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           AQHD+F+ETL+LF EMQ  G++PDE TLVSV+SACTHL ALDQGKWIH Y+RKNGLKIN 
Sbjct: 267 AQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINV 326

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           ILGTTLIDMYMK GCV++ALEVFHG +EKGVS+WNA+I+G A+NGL   SL+ FSEMK  
Sbjct: 327 ILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDC 386

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GV PNEITFV VL ACRHMGLV+EG  HF+SMIQEH++EPN +
Sbjct: 387 GVVPNEITFVAVLVACRHMGLVEEGRCHFSSMIQEHKIEPNRQ 429



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 62/379 (16%)

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
           L+ +++ L    +++ ++++F+ +   +   ++ ++  Y Q    ++A+  +  M    +
Sbjct: 96  LVSWNSILAGKGDVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMNAYGI 155

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
            VD      +  A A   +V  GKL+H   +K G +S V + N LI+MY+ C ++ +A+K
Sbjct: 156 MVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALIHMYSSCREIDSAQK 215

Query: 188 LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247
           LF+    LD +SWNS+++GY+    +E+AK +++ M ++++++ ++MI  + +    AE 
Sbjct: 216 LFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAET 275

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             LF+EM                                   V  DE  +VSV+SAC +L
Sbjct: 276 LALFQEMQLDG-------------------------------VKPDETTLVSVVSACTHL 304

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G  +H    K G++  + L   LI MY   G +  A ++F               
Sbjct: 305 AALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVEDALEVF--------------- 349

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                             M EK V +W+ +I G A +     +L  F EM+  G+ P+E 
Sbjct: 350 ----------------HGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEI 393

Query: 428 TLVSVISACTHLVALDQGK 446
           T V+V+ AC H+  +++G+
Sbjct: 394 TFVAVLVACRHMGLVEEGR 412


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 306/834 (36%), Positives = 474/834 (56%), Gaps = 48/834 (5%)

Query: 7   LAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAAS 66
           +A  ++T+  S  + P+  PT       + LQ C++  +  Q+   M+  G+    F  +
Sbjct: 1   MATTTTTLHQS--SSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGV----FNIN 54

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF--NTMMRAYIQRNVPQQAICLY-KLML 123
           +LI     +     ++Y+   F   E     ++  NT++R Y    + ++AI +Y  +++
Sbjct: 55  KLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMII 114

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
              +  DN+T+P L  A +  ++  EG  +H  V+K G   D++V N+LI+ YA CG + 
Sbjct: 115 VMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVD 174

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--------------- 228
             RK+FDE    ++VSW S++ GY   +  +EA  ++ +M E  +               
Sbjct: 175 LGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACA 234

Query: 229 -------------------IASNSMIV-----LFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                              + SN+++V     ++ + G++     +F E   K+LV ++ 
Sbjct: 235 KLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNT 294

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           ++S Y Q+ +  E LV+   M+      D+V ++S ++ACA L  +  G S HA   + G
Sbjct: 295 IMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNG 354

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +E   N+ NA+I MY  CG+   A K+FD+  N  +++WNS+I+G ++ G +E A  +F 
Sbjct: 355 LERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFG 414

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M E ++VSW+TMI    Q   F E + L  EMQ+ GI+ D  T+V + SAC +L ALD 
Sbjct: 415 EMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDL 474

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            KWI+ YI KN + I+  LGT L+DM+ + G   NA+ VF   E++ VS+W A I   A+
Sbjct: 475 AKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAV 534

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A  ++E+F EM K  V  ++  FV +L A  H G VD+G + F +M + H + P   
Sbjct: 535 EGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIV 594

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG+L+EA +L++SMP+ P+   WG+ L AC+KH + E       K+ +L
Sbjct: 595 HYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQL 654

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P+  G HVLLSNI+AS G+W+DV  VR  M  +G  K+ G S IE +G+I EF +GD +
Sbjct: 655 APEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDES 714

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           H +  +I  ML E+  ++   GY PDT  V  D+D++EKE  L RHSEKLA+A+GLI   
Sbjct: 715 HTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTG 774

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PIR++KNLR+C+DCH+ AK +S+ + REI VRD +R+H FK G CSC DFW
Sbjct: 775 KGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 281/743 (37%), Positives = 429/743 (57%), Gaps = 70/743 (9%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N  ++   +  Y++     +A+ LY  M    +  D   +  + +A   +  +  G+ +H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
           + ++  GF+SDV V   L +MY  CG L  AR++FD  P  D+VSWN+I+AGY       
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 215 EAKFIYNKMP---------------------------------------ERNIIASNSMI 235
           EA  ++++M                                        E +++  N ++
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + GNV  A +LF+ MP +D+ SW+A+I  Y  N  + EAL  F  M    +  + +
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VSVL ACA+L  ++ G  +H  A++ G E    + NAL++MY+ CG + +A KLF+  
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              ++++WN++ISGY                               +QH    E L+LF+
Sbjct: 384 PKKNVVAWNAIISGY-------------------------------SQHGHPHEALALFI 412

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ  GI+PD   +VSV+ AC H +AL+QGK IH Y  ++G + N ++GT L+D+Y K G
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCG 472

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            V+ A ++F    E+ V SW  +I+ + ++G  + +L +FS+M+++G   + I F  +L 
Sbjct: 473 NVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLVD+G ++F  M  ++ L P  +HY C+VDLLGRAG L EA  +I++M + PD 
Sbjct: 533 ACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDA 592

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             WGALLGAC+ H + E+GE+  + L EL PD+ G++VLLSNI+A   RW+DV ++R MM
Sbjct: 593 NVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMM 652

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
             +GV K PGCS++  +  +  FL GDRTHPQ  +I  ML+ + ++++  GY P+T    
Sbjct: 653 KEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLAL 712

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+++E KE  L  HSEKLAI+FG+I  SP  PIRIMKNLR+C+DCH A KFIS+   RE
Sbjct: 713 QDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGRE 772

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I+VRD +RFHH K+G CSC D+W
Sbjct: 773 IIVRDANRFHHVKNGFCSCGDYW 795



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           I  + V W   I GY ++  +++ L L+ +MQ  GI PD+   +SVI AC     L  G+
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +H  I   G + + I+GT L  MY K G ++NA +VF    ++ V SWNA+I G++ NG
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L +FSEM+ +G+ PN  T V V+  C H+  +++G +  +       +E +    
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG-KQIHCYAIRSGIESDVLVV 259

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
             +V++  + G +  A +L E MP+  DVA+W A++G    +  H
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQH 303



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 110/217 (50%), Gaps = 7/217 (3%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           + +Q  QI    I +G  ++    + L+           ++ ++K+F  +   N   +N 
Sbjct: 337 ALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCG---NVNSAYKLFERMPKKNVVAWNA 393

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++  Y Q   P +A+ L+  M    +  D++    +  A A  L++ +GK IH + +++G
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F+S+V V   L+++YA CG+++ A+KLF+  P  D+VSW +++  Y    + E+A  +++
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFS 513

Query: 222 KMPERNI----IASNSMIVLFGRKGNVAEACRLFKEM 254
           KM E       IA  +++      G V +  + F+ M
Sbjct: 514 KMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCM 550


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/723 (40%), Positives = 432/723 (59%), Gaps = 49/723 (6%)

Query: 121 LMLNNNVGVDNY-TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
           + LNN+    N+ T  L+ Q S  +    + K IH  +L+ G   D +  + LI   A+ 
Sbjct: 25  ITLNNDRYFANHPTLSLIDQCSETK----QLKQIHAQMLRTGLFFDPFSASRLITAAALS 80

Query: 180 G--DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-------PER---- 226
               L  A+++FD+ P  +L +WN+++  Y ++ N  ++  I+ +M       P++    
Sbjct: 81  PFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFP 140

Query: 227 -----------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                                        ++   NS+I  + + G +    R+F  +P++
Sbjct: 141 FLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRR 200

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D+VSW+++I+ + Q    EEAL LF  M    V  + + +V VLSACA  +  + G  VH
Sbjct: 201 DVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVH 260

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +   +  I   + L NA++ MY+ CG +  A++LFD     D++SW +M+ GY K G  +
Sbjct: 261 SYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYD 320

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISAC 436
            A+ +FDAM  +D+ +W+ +IS Y Q  +  E L LF E+Q     +PDE TLVS +SAC
Sbjct: 321 AAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSAC 380

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
             L A+D G WIH YI+K G+K+N  L T+LIDMY K G +  AL VFH  E K V  W+
Sbjct: 381 AQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 440

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I G AM+G    ++ +FS+M++  V PN +TF  +L AC H+GLV+EG   FN M   
Sbjct: 441 AMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELV 500

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + + P  KHY CMVD+LGRAG+L+EA ELIE MPM+P  + WGALLGAC  H +  + E+
Sbjct: 501 YGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQ 560

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              +L+EL+P + G +VLLSNI+A  G+WD V  +R +M   G+ K PGCS IE +GI+H
Sbjct: 561 ACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVH 620

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLA 735
           EFL GD +HP   +I   LDE+  +L+  GY P+   +   +++E+ KE  LF HSEKLA
Sbjct: 621 EFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLA 680

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFGLI+     PIRI+KNLR+C DCH+ AK +S+ +DREI++RDR+RFHHF+ G CSCM
Sbjct: 681 IAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCM 740

Query: 796 DFW 798
           D+W
Sbjct: 741 DYW 743



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 256/551 (46%), Gaps = 118/551 (21%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PT++L      + +C   KQ  QI +QM+ TGL  D F+ASRLI  +  L PF  + Y+ 
Sbjct: 37  PTLSL------IDQCSETKQLKQIHAQMLRTGLFFDPFSASRLIT-AAALSPFPSLDYAQ 89

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALR 144
           ++F  +  PN + +NT++RAY   + P Q++ ++  ML+ +    D +T+P L +A++  
Sbjct: 90  QVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             +F GK  H  V+K    SDV++ N+LI+ YA CG+L    ++F   P  D+VSWNS++
Sbjct: 150 EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMI 209

Query: 205 AGYVNADNVEEAKFIYNKMP----------------------------------ERNIIA 230
             +V     EEA  ++ +M                                   ERN I 
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269

Query: 231 -----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS---------------------- 263
                SN+M+ ++ + G+V +A RLF +MP+KD+VSW+                      
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM 329

Query: 264 ---------ALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAG 313
                    ALIS YEQ    +EAL LF  + +      DEV +VS LSACA L  +  G
Sbjct: 330 PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    K G++   +L  +LI MY  CG++  A  +F +    D+  W++MI+G    
Sbjct: 390 GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAG---- 445

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                                       A H    + ++LF +MQ   ++P+  T  +++
Sbjct: 446 ---------------------------LAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 478

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILG----TTLIDMYMKLGCVDNALEVFHGTE- 488
            AC+H+  +++G+    +  +  L    + G      ++D+  + G ++ A+E+      
Sbjct: 479 CACSHVGLVEEGR---TFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPM 535

Query: 489 EKGVSSWNALI 499
               S W AL+
Sbjct: 536 APAASVWGALL 546


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/727 (39%), Positives = 432/727 (59%), Gaps = 65/727 (8%)

Query: 75  LLPFIE-MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT 133
           L P  E + Y+  +F  ++ PN  I+NTM R +     P  A+ LY  M++  +  ++YT
Sbjct: 6   LSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYT 65

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           +P L ++ A   +  EG  IH HVLK G++ D+YV+ +LI+MY                 
Sbjct: 66  FPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMY----------------- 108

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
                         V  + +E+A  ++++   R++++  +++  +  +G +  A  +F E
Sbjct: 109 --------------VQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDE 154

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +P KD+VSW+A+IS Y +   Y+EAL LF  M+   V  DE  +V+V+SA A    ++ G
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG 214

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             VH+     G    + + NALI  YS                               KC
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYS-------------------------------KC 243

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +E A  LF  +  KDV+SW+ +I GY   + + E L LF EM   G  P++ T++S++
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303

Query: 434 SACTHLVALDQGKWIHAYI--RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            AC HL A+D G+WIH YI  R  G+   S L T+LIDMY K G ++ A +VF+    K 
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + +WNA+I GFAM+G A+ + ++FS M+K+ + P++ITFVG+L AC H G++D G   F 
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR 423

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           SM   +++ P  +HYGCM+DLLG +G+ KEAEE+I +M M PD   W +LL ACK HG+ 
Sbjct: 424 SMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNV 483

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           E+GE+  + L +++P++ G +VLLSNI+A+ GRW++V  +RG++  +G+ K+PGCS IE 
Sbjct: 484 ELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
           + ++HEF+ GD+ HP+  EI  ML+EM   L+  G+ PDT EV  ++++E KE  L  HS
Sbjct: 544 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHS 603

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           EKLAIAFGLI+  P   + I+KNLR+C +CH A K IS+ + REI+ RDR RFHHF+ G 
Sbjct: 604 EKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 663

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 664 CSCNDYW 670


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/697 (40%), Positives = 431/697 (61%), Gaps = 47/697 (6%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC-----GDLSAARKLFDESPVLDLVSW 200
           S+++ K IH H +K G  SD      +I   A C     G +  AR++FD  P   L  W
Sbjct: 19  SMYQLKQIHSHTIKMGLSSDPLFQKRVI---AFCCAHESGKMIYARQVFDAIPQPTLFIW 75

Query: 201 NSILAGYVNADNVEEAKFIY------NKMPER---------------------------- 226
           N+++ GY   ++ +    +Y      N  P+R                            
Sbjct: 76  NTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVK 135

Query: 227 -----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                N+    + I +F     V  A ++F      ++V+W+ ++S Y + + ++++ +L
Sbjct: 136 HGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKML 195

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F+ M    V  + V +V +LSAC+ L  ++ G  ++       +E  + L+N LI M+++
Sbjct: 196 FIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAA 255

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CGE+  A+ +FD   N D+ISW S+++G+   G ++ AR  FD + E+D VSW+ MI GY
Sbjct: 256 CGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGY 315

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
            + ++F E L+LF EMQ   ++PDE T+VS+++AC HL AL+ G+W+  YI KN +K ++
Sbjct: 316 LRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDT 375

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +G  LIDMY K G V  A +VF     K   +W A+I+G A+NG  +++L MFS M ++
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            +TP+EIT++GVL AC H G+V++G   F SM  +H ++PN  HYGCMVDLLGRAG L+E
Sbjct: 436 SITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A E+I +MP+ P+   WG+LLGAC+ H + ++ E   ++++EL+P++   +VLL NI+A+
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAA 555

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
             RW+++ +VR +M+ RG+ K PGCS++E NG ++EF+AGD++HPQ  EI   L+ M + 
Sbjct: 556 CKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQD 615

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           L   GY+PDT EV  D+ +E+KET L+RHSEKLAIA+ LI+  P   IRI+KNLR+C DC
Sbjct: 616 LIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDC 675

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H  AK +S A++RE++VRD+ RFHHF+HGSCSC +FW
Sbjct: 676 HHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 156/572 (27%), Positives = 248/572 (43%), Gaps = 135/572 (23%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+KC+S  Q  QI S  I  GL +D     R+I F        +M Y+ ++F  +  P  
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESG-KMIYARQVFDAIPQPTL 72

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           FI+NTM++ Y + N PQ  + +Y LML +N+  D +T+P L +     +++  GK++ +H
Sbjct: 73  FIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNH 132

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K GFDS+++V    I+M+++C  +  ARK+FD     ++V+WN +L+GY      +++
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKS 192

Query: 217 KFIYNKMP---------------------------------------ERNIIASNSMIVL 237
           K ++ +M                                        ERN+I  N +I +
Sbjct: 193 KMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDM 252

Query: 238 FGRKGNVAEACRLFKEM-------------------------------PKKDLVSWSALI 266
           F   G + EA  +F  M                               P++D VSW+A+I
Sbjct: 253 FAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMI 312

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             Y +   + EAL LF  M    V  DE  +VS+L+ACA+L  ++ G  V     K  I+
Sbjct: 313 DGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIK 372

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               + NALI MY  CG +  A+K+F   H+ D  +W +MI G    G  E+A A+F  M
Sbjct: 373 NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNM 432

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           IE                                 I PDE T + V+ ACTH   +++G+
Sbjct: 433 IEAS-------------------------------ITPDEITYIGVLCACTHAGMVEKGQ 461

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                             +  I M M+ G   N            V+ +  ++      G
Sbjct: 462 ------------------SFFISMTMQHGIKPN------------VTHYGCMVDLLGRAG 491

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
             +++ E+   M    V PN I +  +LGACR
Sbjct: 492 RLEEAHEVIVNMP---VKPNSIVWGSLLGACR 520


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 304/750 (40%), Positives = 448/750 (59%), Gaps = 68/750 (9%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I +QMI TGL    +A S+L++F      F    Y+  +F  ++ PN  I+NTM R +  
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
            + P  A+ LY +M++  +  D+YT+P L ++ A      EG+ IH HVLK GFD D+YV
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYV 126

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           + +LI+MYA  G L                               E+A+ +++    R++
Sbjct: 127 HTSLISMYAQNGRL-------------------------------EDARKVFDISSHRDV 155

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID- 287
           ++  ++I  +  +G +  A +LF E+P KD+VSW+A+IS Y +   Y+EAL LF  M+  
Sbjct: 156 VSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  DE  +V+V+SACA    ++ G  VH+     G    + + NALI +YS  GE   
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGE--- 272

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                       VE A  LFD +  KDV+SW+T+I GY   + +
Sbjct: 273 ----------------------------VETACELFDGLWNKDVISWNTLIGGYTHMNLY 304

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN--GLKIN-SILG 464
            E L LF EM   G  P++ T++S++ AC HL A+D G+WIH YI K   G+  N S L 
Sbjct: 305 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ 364

Query: 465 TTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           T+LIDMY K G +D A +VF  +   + +S+WNA+I GFAM+G A+ + ++FS M+ +G+
Sbjct: 365 TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI 424

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P++ITFVG+L AC H G++D G   F SM + + + P  +HYGCM+DLLG +G+ KEAE
Sbjct: 425 EPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAE 484

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           E+I +MPM PD   W +LL ACK HG+ E+GE   +KL++++P + G +VLLSNI+A+ G
Sbjct: 485 EMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAG 544

Query: 644 RWDDVLEVRGMMVRRGV-VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           RW++V ++R ++  +G+  K+PGCS IE + ++HEF+ GD+ HPQ  EI  ML+EM   L
Sbjct: 545 RWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLL 604

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           +  G+ PDT EV  ++++E +E  L  HSEKLAIAFGLI+  P   + IMKNLR+C +CH
Sbjct: 605 EEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCH 664

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
            A K IS+ + REI+ RDR RF HF+ G C
Sbjct: 665 EATKLISKIYKREIIARDRTRFXHFRDGVC 694


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/552 (46%), Positives = 378/552 (68%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F ++   +L  ++A+I  +  ++  ++A   ++      ++ D +    ++ +C  
Sbjct: 72  ASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTK 131

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L  +  G+  H   +K G E  + +QN+L+HMY++ G+   A  +F   + +D++SW SM
Sbjct: 132 LHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSM 191

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I G+ KCG VE AR LFD M EK++V+WSTMISGYAQ++ F + + LF  +Q  G+R +E
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANE 251

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             +VSVIS+C HL AL+ G+  H Y+ KNG+ +N ILGT L+DMY + G +D A+ VF  
Sbjct: 252 TVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFED 311

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+   SW ALI G AM+G +++SL+ F+ M ++G+TP +ITF  VL AC H GLV+ G
Sbjct: 312 LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            + F SM ++HR+EP  +HYGCMVDLLGRAG L+EAE  +  MP+ P+   WGALLGAC+
Sbjct: 372 FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACR 431

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+GERVG+ L++L P H G++VLLSNI+A+   W+ V E+R MM  +G+ K PG 
Sbjct: 432 IHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGH 491

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S+IE +G +H+F  GD +HP++++I+ M +E+  +++  GY  +T +  FDID+EEKE+ 
Sbjct: 492 SLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESA 551

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L RHSEKLAIAFG++      PIRI+KNLR+C DCHTA K IS+ F RE++VRDR+RFHH
Sbjct: 552 LHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHH 611

Query: 787 FKHGSCSCMDFW 798
           F+ G CSCMD+W
Sbjct: 612 FRQGLCSCMDYW 623



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 149/373 (39%), Gaps = 73/373 (19%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM----YSSCGEITTAEKLFDAGH 356
           L  C++LT +K    +HA  ++  I C +   + LI       S    I  A ++F    
Sbjct: 24  LETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           N +L  +N+MI G+                            SG    DQ       +++
Sbjct: 81  NPNLFIFNAMIRGH----------------------------SGSKNPDQ---AFHFYVQ 109

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
            Q  G+ PD  T   ++ +CT L  +  G   H +I K+G + +  +  +L+ MY   G 
Sbjct: 110 SQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGD 169

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGF-------------------------------AMN 505
            + A  +F       V SW ++I GF                               A N
Sbjct: 170 TEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQN 229

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
              DK++E+F  ++  GV  NE   V V+ +C H+G ++ G R  + +++ + +  N   
Sbjct: 230 NHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVK-NGMTLNLIL 288

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE-- 623
              +VD+  R G + +A  + E +P   D  +W AL+     HG  E   +    +VE  
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAG 347

Query: 624 LQPDHDGFHVLLS 636
           L P    F  +LS
Sbjct: 348 LTPRDITFTAVLS 360


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/747 (38%), Positives = 429/747 (57%), Gaps = 72/747 (9%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           S N  I + ++ +YI+ N P  A  +Y  M   +  VDN+  P + +A  L  S   G+ 
Sbjct: 86  SSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQE 145

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  V+K GF  DV+V N LI MY+  G L+ AR LFD+    D+VSW++++  Y  +  
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 213 VEEAKFIYNKMPERNIIAS----------------------------------------- 231
           ++EA  +   M    +  S                                         
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            ++I ++ +  N+A A R+F  + K  ++SW+A+I+ Y       E + LF+ M+   + 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +E+ ++S++  C     ++ G  +HA  ++ G    + L  A I MY  CG++ +A  +
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD+  + DL+ W++MI                               S YAQ++   E  
Sbjct: 386 FDSFKSKDLMMWSAMI-------------------------------SSYAQNNCIDEAF 414

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            +F+ M   GIRP+E T+VS++  C    +L+ GKWIH+YI K G+K + IL T+ +DMY
Sbjct: 415 DIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMY 474

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
              G +D A  +F    ++ +S WNA+I GFAM+G  + +LE+F EM+  GVTPN+ITF+
Sbjct: 475 ANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFI 534

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G L AC H GL+ EG R F+ M+ E    P  +HYGCMVDLLGRAG+L EA ELI+SMPM
Sbjct: 535 GALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPM 594

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P++A +G+ L ACK H + ++GE   ++ + L+P   G++VL+SNI+AS  RW DV  +
Sbjct: 595 RPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYI 654

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M   G+VK PG S IE NG++HEF+ GDR HP   ++  M+DEM +KL+  GY PD 
Sbjct: 655 RRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDV 714

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  +ID+E+K + L  HSEKLA+A+GLI+ +P  PIRI+KNLR+C+DCH A K +S+ 
Sbjct: 715 SCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKI 774

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + REI+VRDR+RFHHFK GSCSC D+W
Sbjct: 775 YGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 137/314 (43%), Gaps = 40/314 (12%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           ++Y+ ++F  L   +   +  M+ AYI  N   + + L+  ML   +  +  T   L + 
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                ++  GKL+H   L+ GF   + +    I+MY  CGD+ +AR +FD     DL+ W
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMW 397

Query: 201 NSILAGYVNADNVEEA-----------------------------------KFIYNKMPE 225
           +++++ Y   + ++EA                                   K+I++ + +
Sbjct: 398 SAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK 457

Query: 226 RNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           + I    I   S + ++   G++  A RLF E   +D+  W+A+IS +  +   E AL L
Sbjct: 458 QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALEL 517

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYS 340
           F  M    V  +++  +  L AC++  +++ G  + H +  + G    +     ++ +  
Sbjct: 518 FEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLG 577

Query: 341 SCGEITTAEKLFDA 354
             G +  A +L  +
Sbjct: 578 RAGLLDEAHELIKS 591


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/762 (38%), Positives = 434/762 (56%), Gaps = 64/762 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L    S     Q+ +Q++ + L   T    +L+  S  L     + Y+  +F  +  P  
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSS--SLDYALSVFNLIPKPET 87

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            + N  +R   +   P++ + +Y+ M    + VD +++P L +A +   S+ EG  IH  
Sbjct: 88  HLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGL 147

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
             K G                           FD  P +                     
Sbjct: 148 AAKLG---------------------------FDSDPFVQ-------------------- 160

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                            ++ ++   G +AEA  +F +M  +D+V+WS +I  Y Q+ ++ 
Sbjct: 161 ---------------TGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           +AL+LF  M ++ V  DE+++ +VLSAC     +  G  +H   ++  I    +LQ+AL+
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+SCG +  A  LF+     +L++  +M++GY K G +E AR++F+ M++KD+V WS 
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MISGYA+ D   E L+LF EMQ  GI+PD+ T++SVI+AC HL ALDQ KWIH ++ KNG
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                 +   LI+MY K G ++ A  +F     K V SW  +I  FAM+G A  +L  F 
Sbjct: 386 FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFH 445

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M+   + PN ITFVGVL AC H GLV+EG + F SMI EH + P   HYGCMVDL GRA
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRA 505

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
            +L+EA EL+E+MP++P+V  WG+L+ AC+ HG+ E+GE   ++L+EL PDHDG HV LS
Sbjct: 506 NLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLS 565

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A   RW+DV +VR +M  +G+ K  GCS  E N  IHEFL  DR+H   +EI   L 
Sbjct: 566 NIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLY 625

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+  KLKL GY+P+T  +  D+++EEK+  +  HSEKLA+ +GL+     + IRI+KNLR
Sbjct: 626 EVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLR 685

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C DCHT  K  S+ ++REIVVRDR RFHH+K G CSC D+W
Sbjct: 686 VCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/585 (47%), Positives = 386/585 (65%), Gaps = 39/585 (6%)

Query: 249 RLFKEMPKKDLVSWSALIS-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           R+F  + K ++  W+ +I  C E NE ++  L+ +  M+ H    ++    +VL AC++ 
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH-FRPNKYTYPAVLKACSDA 150

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSM 366
            VV  G  VHA  VK G+    ++ ++ I MY+S G +  A ++ D  G  +D + WN+M
Sbjct: 151 GVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAM 210

Query: 367 ISGYLK--------------------------------CGSVEKARALFDAMIEKDVVSW 394
           I GYL+                                CG VE AR  FD M E+D +SW
Sbjct: 211 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 270

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S MI GY Q   F E L +F +MQ   IRP +  L SV+SAC +L ALDQG+WIH Y ++
Sbjct: 271 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           N ++++ +LGT+L+DMY K G +D A EVF     K VSSWNA+I G AM+G A+ ++++
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 390

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS+M    + PNEITFVGVL AC H GLV +G   FNSM +E+ +EP  +HYGC+VDLLG
Sbjct: 391 FSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 447

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG+L EAE+++ S+P  P  A WGALLGAC+KHG+ E+GERVG+ L+EL+P + G + L
Sbjct: 448 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 507

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE-ANGIIHEFLAGDRTHPQINEIDN 693
           LSNI+A  GRW++V EVR +M  RG+   PG S+I+   G +H+F+ GD +HPQ+ +I  
Sbjct: 508 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 567

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           MLD++ ++L++EGY PD  +V FDID+EEKET +++HSEKLAI FGLI  SP   IRI+K
Sbjct: 568 MLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVK 627

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH+A K IS+ ++REI+VRDR R+HHF++G+CSC DFW
Sbjct: 628 NLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score =  222 bits (565), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 262/557 (47%), Gaps = 75/557 (13%)

Query: 38  QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP--FIEMSYSFKIFAFLESPN 95
           Q   S     Q  + ++ TG + D++ A  L+K   ++    ++    S ++F F+  PN
Sbjct: 42  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 101

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            F++N M++  I+ N P +AI LY  M+  +   + YTYP + +A +    V EG  +H 
Sbjct: 102 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 161

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVE 214
           H++K G   D ++ ++ I MYA  G L  AR++ D+    +D V WN+++ GY+    VE
Sbjct: 162 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 221

Query: 215 EAKFIYNKMPERNIIAS-NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            A+ ++  MP+R++I++ N+MI  F R G V  A   F EM ++D +SWSA+I  Y Q  
Sbjct: 222 AARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEG 281

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
            + EAL +F  M   ++   + V+ SVLSACANL  +  G  +H  A +  I+    L  
Sbjct: 282 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 341

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           +L+ MY+ CG I  A ++F+   N ++ SWN+MI G    G  E A  LF  M       
Sbjct: 342 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM------- 394

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                       I P+E T V V++AC H   + +G  I   +R
Sbjct: 395 ---------------------------DINPNEITFVGVLNACAHGGLVQKGLTIFNSMR 427

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K                              +G E + +  +  ++      GL  ++ +
Sbjct: 428 KE-----------------------------YGVEPQ-IEHYGCIVDLLGRAGLLTEAEK 457

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572
           + S +      P    +  +LGACR  G V+ G R    +++   LEP NS  Y  + ++
Sbjct: 458 VVSSIP---TEPTPAVWGALLGACRKHGNVELGERVGKILLE---LEPQNSGRYTLLSNI 511

Query: 573 LGRAGMLKEAEELIESM 589
             +AG  +E  E+ + M
Sbjct: 512 YAKAGRWEEVGEVRKLM 528



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 147/331 (44%), Gaps = 71/331 (21%)

Query: 351 LFDAGHNLDLISWNSMISGYLKCG-----SVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
           +   GH  D     S++  Y         S E +  +FD + + +V  W+ MI    +++
Sbjct: 57  ILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENN 116

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL-------- 457
           +  + + L+ EM     RP++ T  +V+ AC+    + +G  +HA++ K+GL        
Sbjct: 117 EPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILS 176

Query: 458 ------------------------KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-V 492
                                   +++++    +ID Y++ G V+ A E+F G  ++  +
Sbjct: 177 SAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMI 236

Query: 493 SSWNALIIGFAMNGLAD-------------------------------KSLEMFSEMKKS 521
           S+WNA+I GF+  G+ +                               ++LE+F +M+K 
Sbjct: 237 STWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKE 296

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            + P +     VL AC ++G +D+G R  ++  + + ++ +      +VD+  + G +  
Sbjct: 297 KIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 355

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHE 612
           A E+ E M  + +V++W A++G    HG  E
Sbjct: 356 AWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 385


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 440/734 (59%), Gaps = 64/734 (8%)

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
           +LI+FS     F  +SY+  IF  ++ PN  I+NTM R +   +    A+ LY  M++  
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           +  ++Y++P L ++ A   ++ EG+ IH HVLK G+D D+YVN +LI+MYA  G L    
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRL---- 116

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE 246
                                      E+A  ++++   R++++  ++I  +  +G +  
Sbjct: 117 ---------------------------EDAHKVFDRSSHRHVVSYTALITGYASRGYINN 149

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A +LF E+  KD+VSW+A+IS Y +   ++EAL L+ +M+   V  DE  +V+V+SACA 
Sbjct: 150 ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQ 209

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              ++ G  +H+     G    I + N LI +YS                          
Sbjct: 210 SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYS-------------------------- 243

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                KCG VE A  LF  + +KDV+SW+T+I G+   + + E L LF EM   G  P++
Sbjct: 244 -----KCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRK--NGLKINSILGTTLIDMYMKLGCVDNALEVF 484
            T++SV+ AC HL A+D G+WIH YI K   G+   S L T+LIDMY K G ++ A +VF
Sbjct: 299 VTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 358

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
                + +SSWNA+I GFAM+G A+ + ++FS+M+K+G+ P++ITFVG+L AC H G++D
Sbjct: 359 DSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLD 418

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G   F SM Q++++ P  +HYGCM+DLLG  G+ KEA+E+I +MPM PD   W +LL A
Sbjct: 419 LGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKA 478

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           CK H + E+GE   + L++++P++ G +VLLSNI+A+ GRWD V ++R ++  +G+ K P
Sbjct: 479 CKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAP 538

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS IE + ++HEF+ GD+ HP+  EI  ML+EM   ++  G+ PDT EV  ++++E KE
Sbjct: 539 GCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKE 598

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEKLAIAFGLI+  P   + I+KNLR+C +CH A K IS+ + REI+ RDR R 
Sbjct: 599 GALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRL 658

Query: 785 HHFKHGSCSCMDFW 798
           H  K G  SC D+W
Sbjct: 659 HLLKDGVWSCHDYW 672


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/807 (36%), Positives = 456/807 (56%), Gaps = 47/807 (5%)

Query: 36  HLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPN 95
           H  K + F+    +  Q+   GL  D +  + LI F +    F +++   ++F  +   +
Sbjct: 87  HCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYS---KFGDVASVEQVFRRMTLRD 143

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +++M+ AY   N P +A   ++ M + N+  +  T+  + +A      + + + IH 
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            V  +G ++DV V   LI MY+ CG++S A ++F +    ++VSW +I+        + E
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 216 AKFIYNKM---------------------PE------------------RNIIASNSMIV 236
           A  +Y KM                     PE                   +++ +N++I 
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALIT 323

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN-----EMYEEALVLFMNMIDHRVM 291
           ++ +   + +A   F  M K+D++SWSA+I+ Y Q+     E  +E   L   M    V 
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF 383

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            ++V  +S+L AC+    ++ G  +HA   K+G E   +LQ A+ +MY+ CG I  AE++
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F    N ++++W S+++ Y+KCG +  A  +F  M  ++VVSW+ MI+GYAQ    ++  
Sbjct: 444 FSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            L   M+  G +PD  T++S++ AC  L AL++GK +HA   K GL+ ++++ T+LI MY
Sbjct: 504 ELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMY 563

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G V  A  VF     +   +WNA++ G+  +G+  +++++F  M K  V PNEITF 
Sbjct: 564 SKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFT 623

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            V+ AC   GLV EG   F  M ++ R++P  +HYGCMVDLLGRAG L+EAEE I+ MP 
Sbjct: 624 AVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPC 683

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD++ W ALLGACK H + ++ E     ++ L+P +   +V LSNI+A  GRWDD  +V
Sbjct: 684 EPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKV 743

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  +G+ K  G S IE +G IH F+A D  HP+I+ I   L+ + K++K  GY PD 
Sbjct: 744 RKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDM 803

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+D+ +KE  L  HSEKLAIA+GL+   P  PIRIMKNLR+C DCHTA KFIS+ 
Sbjct: 804 RFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKI 863

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REIV RD +RFH+FK+G+CSC DFW
Sbjct: 864 RKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  216 bits (549), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/568 (25%), Positives = 260/568 (45%), Gaps = 100/568 (17%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNT 171
           ++AI L  ++    + V++ TY  + +  A +L  FE GK++H  + + G   D+Y+ N+
Sbjct: 60  KEAIQLLGIIKQRGLLVNSNTYGCIIEHCA-KLRRFEDGKMVHKQLDELGLAIDIYLGNS 118

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--- 228
           LIN Y+  GD+++  ++F    + D+V+W+S++A Y   ++  +A   + +M + NI   
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 229 ------------------------------------IASNSMIVLFGRKGNVAEACRLFK 252
                                                 + ++I ++ + G ++ AC +F+
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           +M ++++VSW+A+I    Q+    EA  L+  M+   +  + V  VS+L++C     +  
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H+   + G+E  + + NALI MY  C  I  A + FD     D+ISW++MI+GY +
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
                                     SGY   +   E   L   M+  G+ P++ T +S+
Sbjct: 359 --------------------------SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSI 392

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-- 490
           + AC+   AL+QG+ IHA I K G + +  L T + +MY K G +  A +VF   E K  
Sbjct: 393 LKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452

Query: 491 -----------------------------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
                                         V SWN +I G+A +G   K  E+ S MK  
Sbjct: 453 VAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVE 512

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G  P+ +T + +L AC  +  ++ G +  ++   +  LE ++     ++ +  + G + E
Sbjct: 513 GFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTE 571

Query: 582 AEELIESMPMSPDVATWGALLGACKKHG 609
           A  + + +  + D   W A+L    +HG
Sbjct: 572 ARTVFDKIS-NRDTVAWNAMLAGYGQHG 598



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 103/203 (50%), Gaps = 2/203 (0%)

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E + L   ++  G+  +  T   +I  C  L   + GK +H  + + GL I+  LG 
Sbjct: 58  RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGN 117

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +LI+ Y K G V +  +VF     + V +W+++I  +A N    K+ + F  MK + + P
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N ITF+ +L AC +  ++++  R  +++++   +E +      ++ +  + G +  A E+
Sbjct: 178 NRITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 586 IESMPMSPDVATWGALLGACKKH 608
            + M    +V +W A++ A  +H
Sbjct: 237 FQKMK-ERNVVSWTAIIQANAQH 258


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/585 (47%), Positives = 387/585 (66%), Gaps = 39/585 (6%)

Query: 249 RLFKEMPKKDLVSWSALIS-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           R+F  + K ++  W+ +I  C E NE ++ A++L+  M+      ++    +VL AC++ 
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFK-AILLYYEMVVAHSRPNKYTYPAVLKACSDS 151

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSM 366
            VV  G  VHA  VK G+    ++ ++ I MY+S G +  A ++ D  G  +D + WN+M
Sbjct: 152 GVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAM 211

Query: 367 ISGYLK--------------------------------CGSVEKARALFDAMIEKDVVSW 394
           I GYL+                                CG VE AR  FD M E+D +SW
Sbjct: 212 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 271

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S MI GY Q   F E L +F +MQ   IRP +  L SV+SAC +L ALDQG+WIH Y ++
Sbjct: 272 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           N ++++ +LGT+L+DMY K G +D A EVF     K VSSWNA+I G AM+G A+ ++++
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           FS+M    + PNEITFVGVL AC H GLV +G   FNSM +E+ +EP  +HYGC+VDLLG
Sbjct: 392 FSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG+L EAE+++ S+P  P  A WGALLGAC+KHG+ E+GERVG+ L+EL+P + G + L
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE-ANGIIHEFLAGDRTHPQINEIDN 693
           LSNI+A  GRW++V EVR +M  RG+   PG S+I+   G +H+F+ GD +HPQ+ +I  
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 568

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           MLD++ ++L++EGY PD  +V FDID+EEKET +++HSEKLAI FGLI  SP   IRI+K
Sbjct: 569 MLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVK 628

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH+A K IS+ ++REI+VRDR R+HHF++G+CSC DFW
Sbjct: 629 NLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 158/557 (28%), Positives = 265/557 (47%), Gaps = 75/557 (13%)

Query: 38  QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP--FIEMSYSFKIFAFLESPN 95
           Q   S     Q  + ++ TG + D++ A  L+K   ++    ++    S ++F F+  PN
Sbjct: 43  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 102

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            F++N M++  I+ N P +AI LY  M+  +   + YTYP + +A +    V EG  +H 
Sbjct: 103 VFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHA 162

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVE 214
           H++K G   D ++ ++ I MYA  G L  AR++ D+    +D V WN+++ GY+    VE
Sbjct: 163 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 222

Query: 215 EAKFIYNKMPERNIIAS-NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            A+ ++  MP+R++I++ N+MI  F R G V  A   F EM ++D +SWSA+I  Y Q  
Sbjct: 223 AARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEG 282

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
            + EAL +F  M   ++   + V+ SVLSACANL  +  G  +H  A +  I+    L  
Sbjct: 283 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 342

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           +L+ MY+ CG I  A ++F+   N ++ SWN+MI                          
Sbjct: 343 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI-------------------------- 376

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                 G A H +  + + LF +M    I P+E T V V++AC H   + +G  I   +R
Sbjct: 377 -----GGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMR 428

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K                              +G E + +  +  ++      GL  ++ +
Sbjct: 429 KE-----------------------------YGVEPQ-IEHYGCIVDLLGRAGLLTEAEK 458

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572
           + S +      P    +  +LGACR  G V+ G R    +++   LEP NS  Y  + ++
Sbjct: 459 VVSSIP---TEPTPAVWGALLGACRKHGNVELGERVGKILLE---LEPQNSGRYTLLSNI 512

Query: 573 LGRAGMLKEAEELIESM 589
             +AG  +E  E+ + M
Sbjct: 513 YAKAGRWEEVGEVRKLM 529


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/807 (36%), Positives = 454/807 (56%), Gaps = 47/807 (5%)

Query: 36  HLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPN 95
           H  K + F+    +  Q+   G+  D +  + LI F +    F +++ + ++F  +   +
Sbjct: 65  HCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYS---KFEDVASAEQVFRRMTLRD 121

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +++M+ AY   N P +A   ++ M + N+  +  T+  + +A      + +G+ IH 
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            V   G ++DV V   LI MY+ CG++S A ++F +    ++VSW +I+        + E
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 216 AKFIYNKM---------------------PE------------------RNIIASNSMIV 236
           A  +Y +M                     PE                   ++I +N++I 
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN-----EMYEEALVLFMNMIDHRVM 291
           ++ +  +V EA  +F  M K+D++SWSA+I+ Y Q+     E  +E   L   M    V 
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            ++V  +S+L AC     ++ G  +HA   K+G E   +LQ A+ +MY+ CG I  AE++
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F    N ++++W S +S Y+KCG +  A  +F  M  ++VVSW+ MI+GYAQ+    +  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            L   M+  G +PD  T+++++ AC  L  L++GK +HA   K GL+ ++++ T+LI MY
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMY 541

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G V  A  VF     +   +WNA++ G+  +G   +++++F  M K  V+PNEIT  
Sbjct: 542 SKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLT 601

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            V+ AC   GLV EG   F  M ++ ++ P  +HYGCMVDLLGRAG L+EAEE I+SMP 
Sbjct: 602 AVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPC 661

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD++ W ALLGACK H + ++ ER    ++EL+P +   ++ LSNI+A  GRWDD  +V
Sbjct: 662 EPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKV 721

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  RG+ K  G S IE +G IH F+A D  HP+I+ I   L+ + K++K  GY PD 
Sbjct: 722 RRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDM 781

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+D  +KE  L  HSEKLAIA+GL+      PIRIMKNLR+C DCHTA KFIS+ 
Sbjct: 782 RFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKI 841

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REIV RD +RFH+F +G+CSC DFW
Sbjct: 842 RKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/568 (24%), Positives = 259/568 (45%), Gaps = 98/568 (17%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           ++AI L  ++    + V++ TY  + +  A      +GK++H  + + G + D+Y+ N+L
Sbjct: 38  REAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSL 97

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI---- 228
           IN Y+   D+++A ++F    + D+V+W+S++A Y   ++  +A   + +M + NI    
Sbjct: 98  INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNR 157

Query: 229 -----------------------------------IASNSMIVLFGRKGNVAEACRLFKE 253
                                                + ++I ++ + G ++ AC +F +
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M ++++VSW+A+I    Q+    EA  L+  M+   +  + V  VS+L++C     +  G
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H+   + G+E  + + NALI MY  C  +  A ++FD     D+ISW++MI+GY + 
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ- 336

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                                    SGY   +   E   L   M+  G+ P++ T +S++
Sbjct: 337 -------------------------SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--- 490
            ACT   AL+QG+ IHA + K G +++  L T + +MY K G +  A +VF     K   
Sbjct: 372 RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVV 431

Query: 491 ----------------------------GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
                                        V SWN +I G+A NG   K  E+ S MK  G
Sbjct: 432 AWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG 491

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
             P+ +T + +L AC  +  ++ G +  ++   +  LE ++     ++ +  + G + EA
Sbjct: 492 FQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEA 550

Query: 583 EELIESMPMSPDVATWGALLGACKKHGD 610
             + + M  + D   W A+L    +HGD
Sbjct: 551 RTVFDKMS-NRDTVAWNAMLAGYGQHGD 577



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 218/428 (50%), Gaps = 42/428 (9%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEM 254
           ++  ++     A   E+ K ++ ++ E     +I   NS+I  + +  +VA A ++F+ M
Sbjct: 58  TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +D+V+WS++I+ Y  N    +A   F  M D  +  + +  +S+L AC N ++++ G 
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +H +   +G+E  + +  ALI MYS CGEI+ A ++F                      
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF---------------------- 215

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                      M E++VVSW+ +I   AQH + +E   L+ +M   GI P+  T VS+++
Sbjct: 216 ---------HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLN 266

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           +C    AL++G+ IH++I + GL+ + I+   LI MY K   V  A E+F    ++ V S
Sbjct: 267 SCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS 326

Query: 495 WNALIIGFAMNGLADKS-----LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           W+A+I G+A +G  DK       ++   M++ GV PN++TF+ +L AC   G +++G R 
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG-RQ 385

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            ++ + +   E +      + ++  + G + EAE++   M  + +V  W + L    K G
Sbjct: 386 IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCG 444

Query: 610 DHEMGERV 617
           D    E+V
Sbjct: 445 DLSSAEKV 452



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 164/366 (44%), Gaps = 38/366 (10%)

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E + L   ++  G+  +  T   VI  C      + GK +H  + + G++I+  LG 
Sbjct: 36  RLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGN 95

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +LI+ Y K   V +A +VF     + V +W+++I  +A N    K+ + F  M  + + P
Sbjct: 96  SLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEP 155

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N ITF+ +L AC +  ++++G R  +++++   +E +      ++ +  + G +  A E+
Sbjct: 156 NRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHA--- 640
              M    +V +W A++ A  +H        +  ++++  + P+   F  LL++ +    
Sbjct: 215 FHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 641 -SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
            ++GR      +   +  RG+       MI AN +I  +   +     + E   + D M+
Sbjct: 274 LNRGR-----RIHSHISERGL----ETDMIVANALITMYCKCN----SVQEAREIFDRMS 320

Query: 700 KK------LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           K+        + GYA    +    ID+      +F+  E++    G+     PN +  M 
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDE------VFQLLERMRRE-GVF----PNKVTFMS 369

Query: 754 NLRICN 759
            LR C 
Sbjct: 370 ILRACT 375


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/574 (45%), Positives = 374/574 (65%), Gaps = 17/574 (2%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A +LF  +P+  + SW+ +   Y +    +  + L++ M++  V  D      + 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
                   ++ G  +H   VK G++  +   NALI+MYS CG I  A  +FD     D++
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 362 SWNSMISGY-----------------LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +WN+MISGY                 +  G V+ AR  F  M E+D VSW+ MI GY + 
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           + + E L LF EMQ   I+PDE T+VSV++AC  L AL+ G+WI  YI KN +K ++ +G
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVG 301

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             LIDMY K G V+ AL +F+   ++   +W A+++G A+NG  +++L MFS+M K+ VT
Sbjct: 302 NALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVT 361

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+E+T+VGVL AC H G+VDEG + F SM   H +EPN  HYGCMVDLLG+AG LKEA E
Sbjct: 362 PDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHE 421

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           +I++MPM P+   WGALLGAC+ H D EM ER   +++EL+P++   +VL  NI+A+  +
Sbjct: 422 IIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNK 481

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD + E+R +M+ RG+ K PGCS+IE NGI+HEF+AGD++HPQ  EI   L++M   LK+
Sbjct: 482 WDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKI 541

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY+P+T EV  DI +E+KE  ++RHSEKLAIAFGLI   P   IRI+KNLR+C DCH  
Sbjct: 542 AGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHV 601

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           AK +S+ +DRE++VRDR RFHHF+HGSCSC D+W
Sbjct: 602 AKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 155/535 (28%), Positives = 256/535 (47%), Gaps = 88/535 (16%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           LS+ ET    C+S     QI S+ I TG+I +    ++++ F      F +M Y+ ++F 
Sbjct: 18  LSLFET----CKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSR-EFGDMCYARQLFD 72

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            +  P+ F +N M + Y +   P+  + LY  ML  NV  D YTYP L +     +++  
Sbjct: 73  TIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQL 132

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H HV+K G DS+V+ +N LINMY++CG +  AR +FD S   D+V+WN++++GY  
Sbjct: 133 GRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGY-- 190

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                      N++ ++++I+  +++  F   G V  A + F +MP++D VSW+A+I  Y
Sbjct: 191 -----------NRI-KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGY 238

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            +   Y+EAL+LF  M   ++  DE  +VSVL+ACA L  ++ G  +     K  ++   
Sbjct: 239 LRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDT 298

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            + NALI MY  CG +  A  +F+     D  +W +M+ G    G  E            
Sbjct: 299 FVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGE------------ 346

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                              E L++F +M    + PDE T V V+SACTH   +D+GK   
Sbjct: 347 -------------------EALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 450 AYIR-KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           A +  ++G++ N      ++D+  K G +  A E+                         
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI------------------------- 422

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
                    +K   + PN I +  +LGACR     +   R    +++   LEPN+
Sbjct: 423 ---------IKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILE---LEPNN 465


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 302/864 (34%), Positives = 477/864 (55%), Gaps = 98/864 (11%)

Query: 12  STIKSSVNAKPIFKPTINLSILETH-----LQKCQSFKQFTQILSQMILTGLIADTFAAS 66
           S++  S++  P   P  + S+L  H     L+ C + ++F+ I + +I   LI D    S
Sbjct: 12  SSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITS 71

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
           +++ F   LL    +  + +I ++   P   I+NT++   ++   PQ+ +  Y  M+   
Sbjct: 72  QVLAF---LLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQG 128

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           V +D  T+  L  A      V  G  +H  +LK GF  +  +NN L+ +Y+ CG L    
Sbjct: 129 VLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVC 188

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS--------- 231
           +LF++    D++SWN++++ YV      EA  ++++M      P+   + S         
Sbjct: 189 QLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK 248

Query: 232 ------------------------NSMIVLFGRKGNVAEACRLFKEMPKK--DLVSWSAL 265
                                   N ++ ++ + G + EA  L     +   D+V W+ L
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTL 308

Query: 266 I-------------------------------SCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           +                               S Y Q   Y E+L LF  M    V+ DE
Sbjct: 309 VSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V +V+VLSAC +L     G SVHA  V  G+     L NAL+ +Y+ CG++  A + F+ 
Sbjct: 369 VALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQ 428

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                  SWNSM+ G+ + G V+KAR  F+ + EKD+VSW+TM++ Y +HD F+E+  +F
Sbjct: 429 LPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIF 488

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +MQ   ++PD+ TL+S++S+C  + AL+ G W++ YI KN + I+++LGT LIDMY K 
Sbjct: 489 CKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKC 548

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           GCV+ A E+F    EK V  W A++  +AM G A ++++++ EM++ GV P+ +TF+ +L
Sbjct: 549 GCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALL 608

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLVDEG+++FN +   + + P   HYGCMVDLLGR G L+E  + IE MP+ PD
Sbjct: 609 AACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPD 668

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
           V+ W +L+ AC+ H + E+ E+  ++L+E+ P ++G HVLLSNI+A  GRWDDV +VR  
Sbjct: 669 VSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTK 728

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           +   GV K PG +MIE NG++HEF+A +       +I  ML ++ ++L            
Sbjct: 729 LHETGVPKQPGFTMIEQNGVVHEFVASNLVSA---DILCMLQDIERRLL----------- 774

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
              + QE  +TT  +HSE+LA+AFGLI     +PIR++ ++R+C DCH+  K IS+A+DR
Sbjct: 775 ---VKQELSDTT-SQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDR 830

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EIV+RD +RFH F  G CSC D+W
Sbjct: 831 EIVIRDNYRFHRFTDGHCSCKDYW 854


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/692 (41%), Positives = 420/692 (60%), Gaps = 44/692 (6%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWNSILAGYV 208
           K +H  +L+ G   D +  + L    A+     L  AR LFD+ P  +L +WN+++  Y 
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 209 NADNVEEAKFIY-----------NKMPERNIIAS-------------------------- 231
           ++ +  ++  I+           NK     +I +                          
Sbjct: 102 SSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDL 161

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              NS++  +G  G+++ A RLFK +  KD+VSW+++IS + Q    E+AL LF+ M   
Sbjct: 162 YILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERE 221

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            VM + V +V VLSACA    ++ G  V +   + GI+  + L NA++ MY+ CG +  A
Sbjct: 222 NVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDA 281

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           +KLFD     D+ SW  M+ GY K G  + AR +F+AM  K++ +W+ +IS Y Q+ +  
Sbjct: 282 QKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPK 341

Query: 409 ETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           E L++F E+Q   I +PDE TLVS +SAC  L A+D G WIH YI++ G+ +N  L ++L
Sbjct: 342 EALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSL 401

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G ++ ALEVF+  EE+ V  W+A+I G  M+G    ++++F EM+++ V PN 
Sbjct: 402 VDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNS 461

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF  VL AC H GLVDEG   F+ M   + + P  KHY CMVD+LGRAG L+EA ELI 
Sbjct: 462 VTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELIN 521

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            M  +P  + WGALLGAC  H + E+GE    +L++L+P + G  VLLSNI+A  GRW+ 
Sbjct: 522 EMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEK 581

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V E+R +M    + K PGCS IEANG +HEFL GD THP  + I + L+E+A KLK  GY
Sbjct: 582 VSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGY 641

Query: 708 APDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
            P+   +   I++++ KE  L  HSEKLAIAFGL+T++P  PIR++KNLRIC DCH  AK
Sbjct: 642 EPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAK 701

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +SR +DR+I++RDR+RFHHF+ G CSCMD+W
Sbjct: 702 LVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/558 (25%), Positives = 255/558 (45%), Gaps = 110/558 (19%)

Query: 16  SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL 75
           S++N   +F+   N  IL T + KC S KQ  ++ ++M+ TGL  D F+AS+L   S  L
Sbjct: 15  STLNNNLLFR---NHQILST-IDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASA-L 69

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTY 134
             F  + Y+  +F  +  PN + +NT++RAY   + P Q+  ++  +L+    + N +T+
Sbjct: 70  SSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTF 129

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + +A++   +   G  +H   +K  F  D+Y+ N+L+  Y  CGDLS A +LF     
Sbjct: 130 PFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISC 189

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------------- 231
            D+VSWNS+++ +   +  E+A  ++ KM   N++ +                       
Sbjct: 190 KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWV 249

Query: 232 ----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS------------ 263
                           N+M+ ++ + G+V +A +LF EMP++D+ SW+            
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDY 309

Query: 264 -------------------ALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSA 303
                               LIS YEQN   +EAL +F  +   ++   DEV +VS LSA
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA L  +  G  +H    + GI    +L ++L+ MY+ CG +  A ++F +    D+  W
Sbjct: 370 CAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVW 429

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           ++M                               I+G   H +    + LF EMQ   ++
Sbjct: 430 SAM-------------------------------IAGLGMHGRGKAAIDLFFEMQEAKVK 458

Query: 424 PDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           P+  T  +V+ AC+H   +D+G+ + H      G+         ++D+  + G ++ A+E
Sbjct: 459 PNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAME 518

Query: 483 VFHG-TEEKGVSSWNALI 499
           + +  +     S W AL+
Sbjct: 519 LINEMSTTPSASVWGALL 536


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/568 (45%), Positives = 380/568 (66%), Gaps = 13/568 (2%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           ++  A  +F  + ++ L+ W+ +I CY +N+   + +VLF  ++ H  + D   +  V+ 
Sbjct: 65  DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELV-HEYLPDNFTLPCVIK 123

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD--- 359
            CA L VV+ G  +H LA+KIG    + +Q +L++MYS CGEI  A K+FD   + D   
Sbjct: 124 GCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVL 183

Query: 360 --------LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                   L+SWN+MI+GY+K G  + A  LF  M   D+V+W+ MI+GY  + QF + +
Sbjct: 184 WNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAV 243

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            +F  M   G RP  ATLVSV+SA + L  L +G+WIH+Y+ KNG +++ ILGT+LI+MY
Sbjct: 244 KMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMY 303

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K GC+++AL VF   ++K V  W A+I+G  ++G+A+ +L +F EM K+G+ PN I F+
Sbjct: 304 AKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFI 363

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLVD+G ++F+ M+ E+++EP  +HYGC+VD+L RAG L+EA+  IE+MP+
Sbjct: 364 GVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI 423

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
           SP+   W +LLG  + HG  ++GE   ++++E+ P+  G ++LLSN++A+ G W+ V  V
Sbjct: 424 SPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHV 483

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R MM +RG  K PGCS +E  G +HEF+ GD +HPQ  EI   + EM +KLK  G+ PDT
Sbjct: 484 REMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDT 543

Query: 712 LEVAFDIDQE-EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
            +V   I+ E EKE  L  HSE+LAIAFGLI + P  PIRIMKNLR+CNDCH+  K +S+
Sbjct: 544 TQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSK 603

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            + REI+VRD  RFHHFK+GSCSCMD+W
Sbjct: 604 IYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/557 (25%), Positives = 251/557 (45%), Gaps = 96/557 (17%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMSYSFKIFAFLESPN 95
            Q C + ++  Q+ +  + T +    F +SRL+   +D  P I ++ Y+  IF  ++  +
Sbjct: 23  FQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSD--PKINDLGYARSIFDRIQRRS 80

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +NT+++ Y++       I L+  +++  +  DN+T P + +  A    V EGK IH 
Sbjct: 81  LIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHG 139

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             LK GF SDV+V  +L+NMY+ CG++  ARK+FD     D+V WNS++ G         
Sbjct: 140 LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG--------- 190

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                      N+++ N+MI  + + G+   A  LF +MP  DLV+W+ +I+ YE N  +
Sbjct: 191 -----------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQF 239

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            +A+ +F  M+          +VSVLSA + L V+  G  +H+   K G E    L  +L
Sbjct: 240 MDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSL 299

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I MY+ CG I                               E A  +F A+ +K V  W+
Sbjct: 300 IEMYAKCGCI-------------------------------ESALTVFRAIQKKKVGHWT 328

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            +I G   H   +  L+LF+EM   G++P+    + V++AC H   +D G+         
Sbjct: 329 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR--------- 379

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
                        DM M    ++  LE            +  L+      G  +++    
Sbjct: 380 ----------QYFDMMMNEYKIEPTLE-----------HYGCLVDILCRAGHLEEAKNTI 418

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV---DL 572
             M    ++PN++ ++ +LG  R+ G +D G      +I+   + P +   GC +   ++
Sbjct: 419 ENMP---ISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE---VAPET--IGCYILLSNM 470

Query: 573 LGRAGMLKEAEELIESM 589
              +GM ++   + E M
Sbjct: 471 YAASGMWEKVSHVREMM 487


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/572 (44%), Positives = 383/572 (66%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++ A++ +I +   K  +  A ++F ++   +L  +++ I  +  ++  +++   ++   
Sbjct: 46  DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            + ++ D +    ++ AC     +  G   H   ++ G +  + +QN+L+ MYS+ G+I 
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
           +A  +F     LD++SW SM++GY+K G V  AR LFD M EK++V+WS MISGYA++  
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           F + + L+  +Q  G+  +E  +VSVI++C HL AL+ G+  H YI +N + +N ILGT 
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTA 285

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY + G +D A+ VF     +   SW  LI GFAM+G A+K+LE FS M+K+G+TP 
Sbjct: 286 LVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPR 345

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EITF  VL AC H GLV+ G   F SM +++R+EP  +HYGCMVDLLGRAG L EAE+ +
Sbjct: 346 EITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFV 405

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MPM P+   WGALLGAC+ H + E+ ER G+ L+EL+P+H G++VLLSNI+A   +W+
Sbjct: 406 NEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWE 465

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V  +R MM  RGVVK PG ++ E +G +H+F  GD+THP+I +I+ M +E+  K++L G
Sbjct: 466 NVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAG 525

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  +  +  FDID+EEKE+ + RHSEKLAIA+ ++     +PIRI+KNLR+C DCHTA K
Sbjct: 526 YTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATK 585

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+ ++RE++VRDR+RFHHFK G+CSCMD+W
Sbjct: 586 LISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 198/411 (48%), Gaps = 69/411 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFS--TDLLPFIEMSYSFKIFAFLESP 94
           L+ C +      I + +I    I D FAAS LI  S   +LL      Y+ ++F  +++P
Sbjct: 22  LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLL-----DYAAQVFYQIQNP 76

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N FI+N+ +R +     P ++   Y     N +  DN TYP L +A   + S+  G   H
Sbjct: 77  NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             +++ GFDSDVYV N+L+ MY+  GD                               ++
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGD-------------------------------IK 165

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
            A +++ ++   ++++  SM+  + + G+V  A +LF +MP+K+LV+WS +IS Y +N  
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           +++A+ L+  +    V  +E V+VSV+++CA+L  ++ G   H   ++  +   + L  A
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTA 285

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY+ CG I  A  +FD     D +SW ++I+G+   G  EKA               
Sbjct: 286 LVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA--------------- 330

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                           L  F  M+  G+ P E T  +V+SAC+H   +++G
Sbjct: 331 ----------------LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 110/233 (47%), Gaps = 12/233 (5%)

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +S + +CT L  L   K IHA++ +     +    + LI + +    +D A +VF+  + 
Sbjct: 19  LSFLESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
             +  +N+ I GF+ +   DKS   + + K++G+ P+ +T+  ++ AC   G +D G + 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
              +I+ H  + +      +V +    G +K A  +   +    DV +W +++    K G
Sbjct: 136 HGQIIR-HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRIS-CLDVVSWTSMVAGYIKSG 193

Query: 610 DHEMGERVGRKLVELQPDHD--GFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           D        RKL +  P+ +   + V++S  +A    +D  +E+  ++   GV
Sbjct: 194 D----VTSARKLFDKMPEKNLVTWSVMISG-YAKNSFFDKAIELYFLLQSEGV 241


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/588 (44%), Positives = 388/588 (65%), Gaps = 35/588 (5%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           N   A ++F  +P  ++  W+ +I  C E N++++        +ID R   ++    ++ 
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARP--NKFTYPTLF 139

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC+    V+ G  +H   VK GI   +++++A IHMY+S G +  A K+F +G + D++
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGES-DVV 198

Query: 362 SWNSMISGYLKCGSVE-------------------------------KARALFDAMIEKD 390
            WN+MI GYLKCG +E                                AR LFD M E+D
Sbjct: 199 CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERD 258

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SWS+M+ GY    ++ E L +F +MQ    RP    L SV++AC+++ A+DQG+W+HA
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y+++N +K++++LGT L+DMY K G +D   EVF   +E+ + +WNA+I G A++G A+ 
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+FS++++  + PN IT VGVL AC H G VD+G R F +M + + ++P  +HYGCMV
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G+  EAE+LI SMPM P+ A WGALLGAC+ HG+ ++ ERVG+ L+EL+P + G
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSG 498

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI+A  GR+DDV ++R +M  RG+  +PG S+++ NG +HEF  GD +HPQ+ E
Sbjct: 499 RYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKE 558

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   L  + ++L++ G++PDT +V FDID+EEKET +  HSEKLAIAFGLI   P   I 
Sbjct: 559 IYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIH 618

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+KNLR+C+DCH+A K IS+ FDREI+VRDR R+HHFK+G+CSC DFW
Sbjct: 619 IVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 266/550 (48%), Gaps = 73/550 (13%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP-FIEMSYSFKIFAFLESPNGFIFN 100
           S +  TQ+   ++ +G   D + +  L+K   +  P F    ++ K+F+ + +PN FI+N
Sbjct: 45  SLQYLTQLHGLVLRSGHFQDHYVSGALLKCYAN--PHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
            +++  ++ N   +AI  Y  M+ +    + +TYP L +A ++  +V EG+ IH HV+K 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G  SDV++ +  I+MYA  G L  ARK+F  S   D+V WN+++ GY+    +E AK ++
Sbjct: 162 GIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 221 NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
            +MP +NI + N MI    + GN+ +A +LF EM ++D +SWS+++  Y     Y+EAL 
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F  M          ++ SVL+AC+N+  +  G  VHA   +  I+    L  AL+ MY+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG +    ++F+     ++ +WN+MI                                G
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMI-------------------------------GG 369

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
            A H +  + L LF ++Q   ++P+  TLV V++AC H   +D+G  I   +R+      
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMRE------ 423

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                                  F+G + + +  +  ++     +GL  ++ ++ + M  
Sbjct: 424 -----------------------FYGVDPE-LEHYGCMVDLLGRSGLFSEAEDLINSMP- 458

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579
             + PN   +  +LGACR  G  D   R    +++   LEP NS  Y  + ++  + G  
Sbjct: 459 --MKPNAAVWGALLGACRIHGNFDLAERVGKILLE---LEPQNSGRYVLLSNIYAKVGRF 513

Query: 580 KEAEELIESM 589
            +  ++ + M
Sbjct: 514 DDVSKIRKLM 523


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/687 (40%), Positives = 409/687 (59%), Gaps = 71/687 (10%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           P+ A+  Y  M   ++ VD++  P + +A +       GK IH   +K G  SDV+V N 
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           L+ MY+ CG L +AR                                +++KM ER++++ 
Sbjct: 150 LMQMYSECGSLVSAR-------------------------------LLFDKMSERDVVSW 178

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           ++MI  +           LF    ++ +VSW+A+I+ Y +    EE   LF+ MI+  V 
Sbjct: 179 STMIRAY---------ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF 229

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +++ ++S++ +C  +  V+ G  +HA  ++ G    + L  AL+ MY            
Sbjct: 230 PNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG----------- 278

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCG +  ARA+FD+M  KDV++W+ MIS YAQ +      
Sbjct: 279 --------------------KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAF 318

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF++M+ +G+RP+E T+VS++S C    ALD GKW HAYI K G++++ IL T LIDMY
Sbjct: 319 QLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMY 378

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A  +F    ++ + +WN ++ G+ M+G  +K+L++F+EM+  GV PN+ITF+
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G L AC H GLV EG   F  MI +  L P  +HYGCMVDLLGRAG+L EA ++IESMP+
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
           +P++A WGA+L ACK H +  MGE   R+L+ L+P + G+ VL+SNI+A+  RW+DV  +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  +   G+ K PG S IE NG++H+F  GD  HP I +I  ML EM+KKLK  GY PDT
Sbjct: 559 RKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDT 618

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  +ID+EEKET L  HSEKLA+AFGLI+ +P  PIR++KNLRIC+DCHT  K +S+ 
Sbjct: 619 SVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKI 678

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + R I+VRDR+RFHHF+ GSCSC  +W
Sbjct: 679 YKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 158/357 (44%), Gaps = 55/357 (15%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           L+ D  +   ++ +ST +  +I + Y F   + +       +  M+  YI+ N  ++   
Sbjct: 165 LLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVS------WTAMIAGYIRCNDLEEGER 218

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L+  M+  NV  ++ T   L  +     +V  GK +H ++L+ GF   + +   L++MY 
Sbjct: 219 LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------------- 224
            CG++ +AR +FD     D+++W ++++ Y  A+ ++ A  ++ +M              
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 225 --------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                     E ++I   ++I ++ + G+++ A RLF E   +D
Sbjct: 339 LLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRD 398

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS--- 315
           + +W+ +++ Y  +   E+AL LF  M    V  +++  +  L AC++  +V  G     
Sbjct: 399 ICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFE 458

Query: 316 --VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS-WNSMISG 369
             +H   +   +E Y      ++ +    G +  A K+ ++      I+ W +M++ 
Sbjct: 459 KMIHDFGLVPKVEHY----GCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 26/228 (11%)

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           S +  H +++  L+ +  M+   I  D   + SV+ AC+ +     GK IH +  KNGL 
Sbjct: 84  SPFESHPRYA--LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLV 141

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA--MNGLADKSL---- 512
            +  +   L+ MY + G + +A  +F    E+ V SW+ +I  +     G + +S+    
Sbjct: 142 SDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWT 201

Query: 513 ----------------EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
                            +F  M +  V PN+IT + ++ +C  +G V  G R  ++ I  
Sbjct: 202 AMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKR-LHAYILR 260

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           +    +      +VD+ G+ G ++ A  + +SM  + DV TW A++ A
Sbjct: 261 NGFGMSLALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/593 (45%), Positives = 395/593 (66%), Gaps = 6/593 (1%)

Query: 212 NVEEAKFIYNKMPERNIIASN---SMIVLF---GRKGNVAEACRLFKEMPKKDLVSWSAL 265
           N+EE + I+ +M +  +I      S ++ F      G++A A  +F  + + +   W+ +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I  Y  ++  EEAL+L+ +M+ H V  +      +L AC++++ ++    +HA  +K+G 
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              I   N+L+++YS  G+I +A  LFD     D +SWNSMI GY KCG +E A  +F+ 
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M E++++SW++MISG     +  E L+LF  MQ  GI+ D   LVS + AC  L  LDQG
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KWIHAYI+K+ ++I+ ILG  LIDMY K G ++ A+EVF   EEKGVS W A+I G+A++
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G   ++LE F +M+ +GV PN++TF G+L AC H GLV E    F SM + H  +P+ +H
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGCMVDLLGRAG+LKEAEELIE+MP+ P+ A WGALL AC  HG+ E+G+++G+ L+++ 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P H G ++ L++IHA+ G W+    VR  M  +GV K+PGCS+I  NG  HEFLAGD +H
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQI EID+ML+++ ++L+ EGY P   ++  D++ +EKET +  HSEKLA+ FGLI+  P
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              IRI+KNLR+C DCHT  K IS+ + REI++RDR RFH FK G+C+C D+W
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 229/472 (48%), Gaps = 65/472 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ+C + ++  QI  QM+ TGLI D   AS+L+ F         ++Y+  +F  +  PN 
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG-SLAYARTVFDRIFRPNT 83

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F++NTM+R Y     P++A+ LY  ML ++V  + YT+P L +A +   ++ E + IH H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++K GF S++Y  N+L+N+Y+  GD+ +AR LFD+    D VSWNS++ GY     +E A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
             I+N MPERNII+  SMI      G V          PK                    
Sbjct: 204 YEIFNHMPERNIISWTSMI-----SGCVGAG------KPK-------------------- 232

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M    + +D V +VS L ACA+L V+  G  +HA   K  IE    L   LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG++  A ++F       +  W +MI                             
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI----------------------------- 323

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI-RKN 455
             SGYA H +  E L  FM+MQ  G+ P++ T   +++AC+H   + + K +   + R +
Sbjct: 324 --SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNG 506
           G K +      ++D+  + G +  A E+      K   + W AL+    ++G
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/588 (44%), Positives = 387/588 (65%), Gaps = 35/588 (5%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           N   A ++F  +P  ++  W+ +I  C E N++++        +ID R   ++    ++ 
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARP--NKFTYPTLF 139

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC+    V+ G  +H   VK GI   +++++A I MY+S G +  A K+F +G + D++
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGES-DVV 198

Query: 362 SWNSMISGYLKCGSVE-------------------------------KARALFDAMIEKD 390
            WN+MI GYLKCG +E                                AR LFD M E+D
Sbjct: 199 CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERD 258

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SWS+M+ GY    ++ E L +F +MQ    RP    L SV++AC+++ A+DQG+W+HA
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y+++N +K++++LGT L+DMY K G +D   EVF   +E+ + +WNA+I G A++G A+ 
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+FS++++  + PN IT VGVL AC H G VD+G R F +M + + ++P  +HYGCMV
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G+  EAE+LI SMPM P+ A WGALLGAC+ HG+ ++ ERVG+ L+EL+P + G
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSG 498

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI+A  GR+DDV ++R +M  RG+  +PG S+++ NG +HEF  GD +HPQ+ E
Sbjct: 499 RYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKE 558

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   L  + ++L++ G++PDT +V FDID+EEKET +  HSEKLAIAFGLI   P   I 
Sbjct: 559 IYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIH 618

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+KNLR+C+DCH+A K IS+ FDREI+VRDR R+HHFK+G+CSC DFW
Sbjct: 619 IVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 266/550 (48%), Gaps = 73/550 (13%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP-FIEMSYSFKIFAFLESPNGFIFN 100
           S +  TQ+ + ++ +G   D + +  L+K   +  P F    ++ K+F+ + +PN FI+N
Sbjct: 45  SLQYLTQLHALVLRSGHFQDHYVSGALLKCYAN--PHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
            +++  ++ N   +AI  Y  M+ +    + +TYP L +A ++  +V EG+ IH HV+K 
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G  SDV++ +  I MYA  G L  ARK+F  S   D+V WN+++ GY+    +E AK ++
Sbjct: 162 GIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 221 NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
            +MP +NI + N MI    + GN+ +A +LF EM ++D +SWS+++  Y     Y+EAL 
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F  M          ++ SVL+AC+N+  +  G  VHA   +  I+    L  AL+ MY+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG +    ++F+     ++ +WN+MI                                G
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMI-------------------------------GG 369

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
            A H +  + L LF ++Q   ++P+  TLV V++AC H   +D+G  I   +R+      
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMRE------ 423

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                                  F+G + + +  +  ++     +GL  ++ ++ + M  
Sbjct: 424 -----------------------FYGVDPE-LEHYGCMVDLLGRSGLFSEAEDLINSMP- 458

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579
             + PN   +  +LGACR  G  D   R    +++   LEP NS  Y  + ++  + G  
Sbjct: 459 --MKPNAAVWGALLGACRIHGNFDLAERVGKILLE---LEPQNSGRYVLLSNIYAKVGRF 513

Query: 580 KEAEELIESM 589
            +  ++ + M
Sbjct: 514 DDVSKIRKLM 523



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 47/319 (14%)

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMK--LGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           +HA + ++G   +  +   L+  Y        D AL+VF       V  WN +I G   N
Sbjct: 52  LHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH-------- 557
               K++  +  M      PN+ T+  +  AC     V EG R  +  + +H        
Sbjct: 112 NKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEG-RQIHGHVVKHGIGSDVHI 169

Query: 558 ------------RLEPNSKHY----------GCMVDLLGRAGMLKEAEELIESMPMSPDV 595
                       RLE   K +            M+D   + G+L+ A+ L   MP+  ++
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK-NI 228

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH-VLLSNIHASKGRWDDVLEVRGM 654
            +W  ++    K G+  +G+   RKL +   + D      + + + S GR+ + LE+   
Sbjct: 229 GSWNVMINGLAKGGN--LGD--ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ 284

Query: 655 MVRRGVVKIPG----CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP- 709
           M R      PG     S++ A   I     G   H  +      LD +     L+ YA  
Sbjct: 285 MQREETR--PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342

Query: 710 DTLEVAFDIDQEEKETTLF 728
             L++ +++ +E KE  +F
Sbjct: 343 GRLDMGWEVFEEMKEREIF 361


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/593 (45%), Positives = 394/593 (66%), Gaps = 6/593 (1%)

Query: 212 NVEEAKFIYNKMPERNIIASN---SMIVLF---GRKGNVAEACRLFKEMPKKDLVSWSAL 265
           N+EE + I+ +M +  +I      S ++ F      G++A A  +F  + + +   W+ +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I  Y  ++  EEAL+L+ +M+ H V  +      +L AC++++  +    +HA  +K+G 
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGF 149

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              I   N+L+++YS  G+I +A  LFD     D +SWNSMI GY KCG +E A  +F+ 
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M E++++SW++MISG     +  E L+LF  MQ  GI+ D   LVS + AC  L  LDQG
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KWIHAYI+K+ ++I+ ILG  LIDMY K G ++ A+EVF   EEKGVS W A+I G+A++
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G   ++LE F +M+ +GV PN++TF G+L AC H GLV E    F SM + H  +P+ +H
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGCMVDLLGRAG+LKEAEELIE+MP+ P+ A WGALL AC  HG+ E+G+++G+ L+++ 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P H G ++ L++IHA+ G W+    VR  M  +GV K+PGCS+I  NG  HEFLAGD +H
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQI EID+ML+++ ++L+ EGY P   ++  D++ +EKET +  HSEKLA+ FGLI+  P
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              IRI+KNLR+C DCHT  K IS+ + REI++RDR RFH FK G+C+C D+W
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 228/472 (48%), Gaps = 65/472 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ+C + ++  QI  QM+ TGLI D   AS+L+ F         ++Y+  +F  +  PN 
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG-SLAYARTVFDRIFRPNT 83

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F++NTM+R Y     P++A+ LY  ML ++V  + YT+P L +A +   +  E + IH H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAH 143

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++K GF S++Y  N+L+N+Y+  GD+ +AR LFD+    D VSWNS++ GY     +E A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
             I+N MPERNII+  SMI      G V          PK                    
Sbjct: 204 YEIFNHMPERNIISWTSMI-----SGCVGAG------KPK-------------------- 232

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M    + +D V +VS L ACA+L V+  G  +HA   K  IE    L   LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG++  A ++F       +  W +MI                             
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI----------------------------- 323

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI-RKN 455
             SGYA H +  E L  FM+MQ  G+ P++ T   +++AC+H   + + K +   + R +
Sbjct: 324 --SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNG 506
           G K +      ++D+  + G +  A E+      K   + W AL+    ++G
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/702 (39%), Positives = 422/702 (60%), Gaps = 64/702 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++ +Y +RN P+ A+ +Y  +   +  VDN+  P                     VL
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAP--------------------SVL 131

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           KA                  CG                 VSW  +          E   F
Sbjct: 132 KA------------------CGQ----------------VSWTQL--------GKEIHGF 149

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           +  K  +R++   N++++++G    V  A  +F +M ++D+VSWS +I    +N+ ++ A
Sbjct: 150 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMA 209

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL--QNALI 336
           L L   M   +V   EV +VS+++  A+   ++ G ++HA  ++     ++ +    AL+
Sbjct: 210 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 269

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG +  A +LF+      ++SW +MI+G ++   +E+ARALFD+   +DV+ W+ 
Sbjct: 270 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTA 329

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           M+S YAQ +   +  +LF +M+  G+RP + T+VS++S C    ALD GKW+H+YI K  
Sbjct: 330 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 389

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           ++++ IL T L+DMY K G ++ A  +F     + +  WNA+I GFAM+G  +++L++F+
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 449

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM++ GV PN+ITF+G+L AC H GLV EG + F  M+    L P  +HYGCMVDLLGRA
Sbjct: 450 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 509

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G+L EA E+I+SMP+ P+   WGAL+ AC+ H + ++GE    +L+E++P++ G++VL+S
Sbjct: 510 GLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMS 569

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A+  RW D   VR  M   G+ K PG S+IE NG +HEFL GD++HPQI  I+ ML 
Sbjct: 570 NIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 629

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           EM +KL   GY PDT  V  +ID+EEKET L  HSEKLA+AFGLI+ +P  PIRI+KNLR
Sbjct: 630 EMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLR 689

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +CNDCH A K +S+ + R I+VRDR+RFHHF+ G CSC D+W
Sbjct: 690 VCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 43/223 (19%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F   ++ +  I+  M+ AY Q N   QA  L+  M  + V     T   L    A+  +
Sbjct: 315 LFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 374

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H ++ K   + D  +N  L++MYA CGD++AA +LF E+   D+  WN+I+ G
Sbjct: 375 LDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITG 434

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNS--------------------------------- 233
           +      EEA  I+ +M ER  +  N                                  
Sbjct: 435 FAMHGYGEEALDIFAEM-ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLV 493

Query: 234 --------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                   M+ L GR G + EA  + K MP K + + W AL++
Sbjct: 494 PQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVA 536


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/840 (35%), Positives = 477/840 (56%), Gaps = 43/840 (5%)

Query: 1   MTLATKLAHLSSTIKSSVNAKP-IFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLI 59
           M +     H S  + +   +KP +   +       + L+ C++  +       +   GL 
Sbjct: 1   MAMLGNFLHFSPMVLAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLD 60

Query: 60  ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES-PNGFIFNTMMRAYIQRNVPQQAICL 118
            D  A ++L+  S +L     +S++ ++F   ES    F++N+++R Y    + ++AI L
Sbjct: 61  DDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILL 120

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           +  M+N+ +  D YT+P      A       G  IH  ++K  +  D++V N+L++ YA 
Sbjct: 121 FIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAE 180

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA---------------------- 216
           CG+L  ARK+FDE    ++VSW S++ GY   +  ++A                      
Sbjct: 181 CGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVC 240

Query: 217 ------------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                              FI +   E N +  ++++ ++ +   +  A RLF E    +
Sbjct: 241 VISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASN 300

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           L   +A+ S Y +  + +EAL +   M+D  +  D + ++S +S+C+ L  +  G S H 
Sbjct: 301 LDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHG 360

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             ++ G E + N+ NALI MY  C    TA ++FD   N  +++WNS+++GY++ G V+ 
Sbjct: 361 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDA 420

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACT 437
           A   F+ M EK++VSW+T+IS   Q + + E + +F  MQ    +  D  T++S+ SAC 
Sbjct: 421 AWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACG 480

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           HL ALD  KWI+ YI KN ++++  LGTTL+DM+ + G  ++A+ +F+    + VS+W A
Sbjct: 481 HLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTA 540

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
            I   AM G  ++++E+F+EM + G+ P+ + F+G L AC H GLV +G   FNSM + H
Sbjct: 541 AIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLH 600

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            + P   HYGCMVDLLGRAG+L+EA +LI+ MP  P+   W +LL AC+  G+ EM    
Sbjct: 601 GVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFA 660

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
             K+  L P+  G +VLLSN++AS GRW+D+ +VR  M  +G+ K PG S+I+  G  HE
Sbjct: 661 AEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHE 720

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F +GD +HP++ +I+ MLDE++++    G+ PD   V  D+D++EK   L RHSEKLA+A
Sbjct: 721 FTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMA 780

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGLI+ +    IRI+KNLR+C+ CH+ AKF S+ ++REI++RD +RFH  + G CSC DF
Sbjct: 781 FGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/764 (38%), Positives = 437/764 (57%), Gaps = 37/764 (4%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYSFKIFAFLESPNGFIF 99
           +S +Q +Q+ + +  +G IA   +A  L+   T+ +     + Y   +F  L     F+F
Sbjct: 10  RSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLF 69

Query: 100 NTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK--LIHDH 156
           +T +RA +Q +      + L + M +  V    +T+  + +  A       G   ++H  
Sbjct: 70  DTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAA 129

Query: 157 VLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            L+    S    V N LI+MYA  G    AR+ FDE P  D V W +++ G V       
Sbjct: 130 CLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLV------- 182

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                                   R G + EA RL  + P++++VSW++LI+ Y +    
Sbjct: 183 ------------------------RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRP 218

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            +A+  F  M+   V  DEV V+  LSAC+ L  +  G  +H L  +  I    NL  AL
Sbjct: 219 ADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVAL 278

Query: 336 IHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           I MY+ CG+I  A+ +FDA G       WN++I GY K G V+ AR+LFD M  +DV+++
Sbjct: 279 IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITF 338

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           ++MI+GY    +  + L LFM+M+ HG+R D  T+VS+++AC  L AL  G+ +HA I +
Sbjct: 339 NSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQ 398

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             ++ +  LGT L+DMYMK G VD A  VFH   E+ V +W A+I G A NG+   +LE 
Sbjct: 399 RIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALES 458

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F +MK+ G  P  +T++ VL AC H  L+DEG  HFN M   H+L P  +HYGCM+DLL 
Sbjct: 459 FCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLA 518

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           R+G+L EA  L+++MPM P+   WG++L AC+ H + ++       L++L P+ D  +V 
Sbjct: 519 RSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQ 578

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           L NI+    +W D   VR +M  RGV K  G S I   G +H+F+A D++HP   EI  M
Sbjct: 579 LYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAM 638

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           ++E+A +LK  GY+P T  +A D+D+EEKE  L  HSEK+AIAFGLI++ P  PI I+KN
Sbjct: 639 MEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKN 698

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCH+A K +S+ ++REI+VRDR RFHHF+ G+CSC DFW
Sbjct: 699 LRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/566 (48%), Positives = 376/566 (66%), Gaps = 13/566 (2%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQ-NEMYEEALVLFMNMIDHRV---MVDEVVV 297
           G+++ A +LF ++PK D+  ++ +I  +         ++ +F++M+  RV   + +    
Sbjct: 63  GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMV--RVSGFLPNRYTF 120

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           V V  AC N   V  G  +   A+KIG+E  + + NA+I MY++ G +  A ++FD   +
Sbjct: 121 VFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLD 180

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL SWN MI GY+  G + +A+ +FD M E+DVVSW+T+I+GY Q   F E L LF EM
Sbjct: 181 QDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM 240

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G  P+E TL S ++AC +LVALDQG+WIH YI K+ +K+N  L  +L+DMY K G +
Sbjct: 241 LQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEI 300

Query: 478 DNALEVFHGTEEKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           D A +VFH  +E G    V  WNA+I G+AM+G + +++++F +MK   V+PN++TFV +
Sbjct: 301 DFAAKVFH--DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVAL 358

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H  LV+EG  +F SM   + +EP  +HYGCMVDLLGR+G+LKEAEE + +MPM+P
Sbjct: 359 LNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAP 418

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D   WGALLGAC+ H D E G+R+G+ + EL  DH G HVLL+N++++ G+WD+   VR 
Sbjct: 419 DATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQ 478

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            +   G  K PGCS IE NG+ H+FL GDR+HPQ  ++   LDEM  KLK  GY P+  E
Sbjct: 479 KIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGE 538

Query: 714 VAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
           V  DID EE KET L +HSEKLAIAFGLI   P   IRI+KNLR+C DCH A KFIS+ +
Sbjct: 539 VLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVY 598

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            REI+VRDR R+HHFK G CSC D+W
Sbjct: 599 KREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 148/584 (25%), Positives = 263/584 (45%), Gaps = 109/584 (18%)

Query: 24  FKPTINLSILET-HLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           FK  +N + L+   L+ C+S  Q  Q  + +I TGLI     A++L+K       F  +S
Sbjct: 8   FKKPLNSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLI-ASSFGSLS 66

Query: 83  YSFKIFAFLESPNGFIFNTMMRAY-IQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQA 140
           Y+ ++F  +  P+ FI+NTM++A+ +       ++ ++  M+  +  + N YT+  + +A
Sbjct: 67  YAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKA 126

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
               L V EG+ I  H +K G +S+++V N +I MYA  G +  AR++FD S   DL SW
Sbjct: 127 CGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSW 186

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           N ++ GYV +  +  AK ++++M ER++++  ++I  + + G   EA  LF EM +    
Sbjct: 187 NIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP 246

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
                                           +E  + S L+ACANL  +  G  +H   
Sbjct: 247 P-------------------------------NEFTLASALAACANLVALDQGRWIHVYI 275

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLF--DAGHNLDLISWNSMISGYLKCGSVEK 378
            K  I+    L  +L+ MY+ CGEI  A K+F  + G  L +  WN+MI G         
Sbjct: 276 DKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGG--------- 326

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                                 YA H +  E + LF +M+   + P++ T V++++AC+H
Sbjct: 327 ----------------------YAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSH 364

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
              +++G+    Y +                          ++   +G E + +  +  +
Sbjct: 365 GKLVEEGR---GYFK--------------------------SMASSYGIEPE-IEHYGCM 394

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           +     +GL  ++ E    M    + P+   +  +LGACR    ++ G R    +I+   
Sbjct: 395 VDLLGRSGLLKEAEETVFNMP---MAPDATIWGALLGACRIHKDIERGQR-IGKIIK--- 447

Query: 559 LEPNSKHYGCMV---DLLGRAGMLKEAEELIESMPMSPDVATWG 599
            E +S H GC V   +L   +G   EA+ + + + +S    T G
Sbjct: 448 -ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPG 490


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/699 (41%), Positives = 414/699 (59%), Gaps = 49/699 (7%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---LSAARKLFDESPVLDLVSWNSILA 205
           +G  IH   +  G    ++  + LI+ +++ G    L  +R LF +    +L  WN+++ 
Sbjct: 24  QGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIR 83

Query: 206 GYVNADNVEEAKFIYNKM---------------------------P-------------E 225
           GY  +DN  EA  +Y  M                           P             E
Sbjct: 84  GYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFE 143

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            ++   N++I L+   GN+  A  LF E   +DLVS++ +I  Y +    E AL LF  M
Sbjct: 144 SDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM 203

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK--IGIECYINLQNALIHMYSSCG 343
            +  ++ DE   V++ S C+ L     G  +HA   K    I+  I L++A++ MY+ CG
Sbjct: 204 QNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCG 263

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
            I  AE++F   G +    +W+SM+ GY +CG +  AR LF+ M E+DV+SW+ MISGY+
Sbjct: 264 LINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYS 323

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINS 461
           Q  Q SE L LF EM+  GI+PDE TLV+V+SAC  L A D GK + H YI       N+
Sbjct: 324 QAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNT 383

Query: 462 ILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           IL   ++DMY K G +D+ALE+F   G   K    +N++I G A +GL + ++ +F E+ 
Sbjct: 384 ILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI 443

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            +G+ P+E+TFVGVL AC H GL++EG + F SM   + ++P  +HYGCMVDLLGR G L
Sbjct: 444 STGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCL 503

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
           +EA +L++ MP   +   W ALL AC+ HG+ ++GE  G+KL+E++  H   +VLLSNI 
Sbjct: 504 EEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNIL 563

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           A   +W++  +VR +M   G+ K PG S IE  G IH F+A D++HPQ  EI+ ML +MA
Sbjct: 564 ADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMA 623

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            +LK  GY P+T +V FDID+EEKE+ +  HSEKLA+AFGL+  SP + IRI+KNLRIC 
Sbjct: 624 MRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICA 683

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH A K +S  + REI VRD  RFHHF++GSCSCMDFW
Sbjct: 684 DCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 155/542 (28%), Positives = 255/542 (47%), Gaps = 110/542 (20%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C+SFKQ  QI +Q I+ GL    F+ SRLI F + L     + +S  +F+ ++ PN 
Sbjct: 16  LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNL 75

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFE-GKLIH 154
           F++NTM+R Y + + P++AI LY  M+   +   +N+T+P L  + A RLS  E G  +H
Sbjct: 76  FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA-RLSSLEPGHEVH 134

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            H++K GF+SD++V N LI++Y+V G+L+ AR LFDES V DLVS+N+++ GY   +  E
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194

Query: 215 EAKFIYNKMP-----------------------------------------ERNIIASNS 233
            A  ++ +M                                          + NI+  ++
Sbjct: 195 SALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSA 254

Query: 234 MIVLFGRKGNVAEACRLFKEM-PKKDLVSWS----------------------------- 263
           ++ ++ + G +  A R+F  M   K   +WS                             
Sbjct: 255 IVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVIS 314

Query: 264 --ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
             A+IS Y Q     EAL LF  M    +  DEV +V+VLSACA L     G  ++   +
Sbjct: 315 WTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYI 374

Query: 322 KIGI-ECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKA 379
           + G+      L  A++ MY+ CG I +A ++F   G N        M +G++        
Sbjct: 375 ENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKN--------MKTGFV-------- 418

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                         +++MI+G AQH      +++F E+   G++PDE T V V+ AC H 
Sbjct: 419 --------------FNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHS 464

Query: 440 VALDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNA 497
             +++GK +  +     G+K        ++D+  + GC++ A ++      E     W A
Sbjct: 465 GLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRA 524

Query: 498 LI 499
           L+
Sbjct: 525 LL 526


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/553 (47%), Positives = 366/553 (66%), Gaps = 1/553 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+  ++   +L  ++ALI     +E  E +   ++  +   ++ D +    ++ ACA 
Sbjct: 70  AIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQ 129

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L     G   H  A+K G E    +QN+L+HMY+S G+I  A  +F      D++SW  M
Sbjct: 130 LENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCM 189

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+GY +CG  + AR LFD M E+++V+WSTMISGYA+++ F + +  F  +Q  G+  +E
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             +V VIS+C HL AL  G+  H Y+ +N L +N ILGT ++DMY + G V+ A+ VF  
Sbjct: 250 TVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQ 309

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK V  W ALI G AM+G A+K+L  FSEM K G  P +ITF  VL AC H G+V+ G
Sbjct: 310 LPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERG 369

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
              F SM ++H +EP  +HYGCMVDLLGRAG L++AE+ +  MP+ P+   W ALLGAC+
Sbjct: 370 LEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACR 429

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+GERVG+ L+E+QP++ G +VLLSNI+A   +W DV  +R MM  +GV K PG 
Sbjct: 430 IHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGY 489

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA-KKLKLEGYAPDTLEVAFDIDQEEKET 725
           S+IE +G +HEF  GD+THP+I +I+ + +++   K+KL GY  +T E  FDID+EEKE 
Sbjct: 490 SLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEG 549

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L RHSEKLAIA+G++ I  P PIRI+KNLR+C DCHTA K IS+ F+ E++VRDR+RFH
Sbjct: 550 ALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFH 609

Query: 786 HFKHGSCSCMDFW 798
           HFK G+CSCMD+W
Sbjct: 610 HFKEGTCSCMDYW 622



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/554 (25%), Positives = 245/554 (44%), Gaps = 100/554 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C + +    I + M+ T L  D FAASRLI F  D    + + Y+ ++ + +++PN 
Sbjct: 24  LECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNL-LHYAIRVASQIQNPNL 82

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           FI+N ++R       P+ +   Y   L   +  DN T+P L +A A   +   G   H  
Sbjct: 83  FIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQ 142

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K GF+ D YV N+L++MYA  GD++AAR +F      D+VSW  ++AGY    + + A
Sbjct: 143 AIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSA 202

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + ++++MPERN                               LV+WS +IS Y +N  +E
Sbjct: 203 RELFDRMPERN-------------------------------LVTWSTMISGYARNNCFE 231

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           +A+  F  +    V+ +E V+V V+S+CA+L  +  G   H   ++  +   + L  A++
Sbjct: 232 KAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVV 291

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG +  A  +F+     D++ W ++I+G    G  EKA                 
Sbjct: 292 DMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKA----------------- 334

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
                         L  F EM   G  P + T  +V++AC+H   +++G  I   ++++ 
Sbjct: 335 --------------LWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRD- 379

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                                       HG E + +  +  ++      G   K+ +   
Sbjct: 380 ----------------------------HGVEPR-LEHYGCMVDLLGRAGKLRKAEKFVL 410

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGR 575
           +M    V PN   +  +LGACR    V+ G R    +++   ++P  S HY  + ++  R
Sbjct: 411 KMP---VKPNAPIWRALLGACRIHKNVEVGERVGKILLE---MQPEYSGHYVLLSNIYAR 464

Query: 576 AGMLKEAEELIESM 589
           A   K+   + + M
Sbjct: 465 ANKWKDVTVMRQMM 478


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/728 (39%), Positives = 433/728 (59%), Gaps = 64/728 (8%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100
           Q  +    I +QMI TGL    +A S+LI+F      F  + Y+  +F  ++ PN  I+N
Sbjct: 1   QILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWN 60

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
           TM R +   + P  A+ LY  M++  +  ++YT+P L ++ A   +  EG+ IH HVLK 
Sbjct: 61  TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G D D+YV+ +LI+MY   G L                               E+A  ++
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRL-------------------------------EDAHKVF 149

Query: 221 NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
           ++ P R++++  ++I  +  +G +  A ++F E+P KD+VSW+A+IS Y +   Y+EAL 
Sbjct: 150 DESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALE 209

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF +M+   V  DE  +V+V+SACA    ++ G  VH+     G    + + NALI +YS
Sbjct: 210 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYS 269

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          KCG +E A  LF+ +  KDV+SW+T+I G
Sbjct: 270 -------------------------------KCGELETACGLFEGLPYKDVISWNTLIGG 298

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI--RKNGLK 458
           Y   + + E L LF EM   G  P++ T++S++ AC HL A+D G+WIH YI  R  G+ 
Sbjct: 299 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVA 358

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
             S L T+LIDMY K G ++ A +VF+    K +SSWNA+I GFAM+G AD S ++FS M
Sbjct: 359 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRM 418

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +K+G+ P++ITFVG+L AC H G++D G   F SM Q++++ P  +HYGCM+DLLG +G+
Sbjct: 419 RKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGL 478

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            KEAEE+I +M M PD   W +LL ACK HG+ E+GE   + L++++P++ G +VLLSNI
Sbjct: 479 FKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNI 538

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A+ GRW++V   R ++  +G+ K+PGCS IE + ++HEF+ GD+ HP+  EI  ML+EM
Sbjct: 539 YATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 598

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
              L+  G+ PDT EV  ++++E KE  L  HSEKLAIAFGLI+  P   + I+KNLR+C
Sbjct: 599 EVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 658

Query: 759 NDCHTAAK 766
            +CH A K
Sbjct: 659 RNCHEAYK 666


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/768 (36%), Positives = 439/768 (57%), Gaps = 76/768 (9%)

Query: 62  TFAASRLIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRN-------- 110
           T   S ++K++  +  ++   +   +  +F  +   +   +N M+  Y+  N        
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV 113

Query: 111 ---VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
              +P + +  + +ML+  V   N     L+ A AL   + E  ++  + + +GF  + +
Sbjct: 114 FEKMPDRDLISWNVMLSGYVKNGN-----LSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 168 VN-----------------NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           V                  N L++ Y   G +  AR+LFD     ++VSWN ++ GYV  
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             +++A+ ++++MP R+ I+ N MI  + + G ++EA RLF+E+P +D+ +W+A++S + 
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           QN M +EA  +F  M +     +EV                                   
Sbjct: 289 QNGMLDEATRIFEEMPEK----NEVS---------------------------------- 310

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
             NA+I  Y    +I  A +LFD   + +  SWN+M++GY +CG++++A+ LFD M ++D
Sbjct: 311 -WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW+ MISGYAQ  Q  E L LF++M+  G   + + L   +S+C  + AL+ GK +H 
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG 429

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + K G +   I G  L+ MY K G ++ A +VF    EK + SWN +I G+A +G   +
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +F  MK + + P+++T VGVL AC H GLVD+G  +FNSM Q + +  N+KHY CM+
Sbjct: 490 ALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMI 548

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA  L++SMP  PD ATWGALLGA + HGD E+GE+   K+ E++PD+ G
Sbjct: 549 DLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSG 608

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSN++A+ GRW +V E+R  M  +GV K+PG S +E     H F  GD +HP+   
Sbjct: 609 MYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAER 668

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   L+E+  +LK +G+   T  V  D+++EEKE  L  HSEKLA+AFG+++I P  PIR
Sbjct: 669 IYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIR 728

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++KNLR+C DCH A K IS+   R+I+VRD +RFHHF  GSCSC D+W
Sbjct: 729 VIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 204/446 (45%), Gaps = 58/446 (13%)

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           E+K   + + + +I+  N  I  + RKG    A  +F  M ++  V+++A+IS Y  N  
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA---------GTSVHAL------ 319
           ++ A  +F  M D R ++   V++S      NL+  +A           S +A+      
Sbjct: 107 FDCARKVFEKMPD-RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 320 ------AVKIGIECYINLQ---NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
                 A KI  +  +  +   N L+  Y   G I  A +LFD+  + +++SWN ++ GY
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           ++   ++ AR+LFD M  +D +SW+ MI+GYAQ+   SE   LF E+    IR D     
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP---IR-DVFAWT 281

Query: 431 SVISACTHLVALDQGKWIHAYI-RKNGLKINSILG------------------------- 464
           +++S       LD+   I   +  KN +  N+++                          
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 465 -TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             T++  Y + G +D A  +F    ++   SW A+I G+A +G ++++L +F +MK+ G 
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             N       L +C  +  ++ G +    +++    +        ++ + G+ G ++EA 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAG-FQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 584 ELIESMPMSPDVATWGALLGACKKHG 609
           ++ E +    D+ +W  ++    +HG
Sbjct: 461 DVFEDIT-EKDIVSWNTMIAGYARHG 485


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/764 (37%), Positives = 443/764 (57%), Gaps = 37/764 (4%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL-PFIEMSYSFKIFAFLESP-NGFI 98
           +S +Q  ++ + ++ +G +    +AS L+    +   P   +   + +  F   P + F+
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFL 69

Query: 99  FNTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFEGKLIHDH 156
           F+T +RA  + +  P+  + LY+ M    V  D +T+  L +  A  R  V   +++H  
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAA 129

Query: 157 VLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             +    S V  V+N +I+MY   G    AR+ FD+                        
Sbjct: 130 CFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDD------------------------ 165

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                  +P ++ +A  ++I    + G + +A  L +  P ++++SW+ LIS Y +    
Sbjct: 166 -------IPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRA 218

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            EA+  F +M+   +  DEV V+ +LSACA L  +  G S+H L  + G+     L  AL
Sbjct: 219 AEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVAL 278

Query: 336 IHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           I MY+ CG+I  A ++FDA G      SWN+MI GY K G V+ AR LFD M ++D+V++
Sbjct: 279 IDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTF 338

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           +++I+GY    +  E L LFM+M+ H +R D  T+VS+++AC  L AL QG+ +HA I +
Sbjct: 339 NSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQ 398

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             ++++  LGT L+DMY+K G V+ A  VF     + V +W+A+I G A NG+   +LE 
Sbjct: 399 RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  MK  G  PN +T++ +L AC H  L+DEG  +F  M   H + P  +HYGCM+DLLG
Sbjct: 459 FFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLG 518

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           R+G+L EA +L+ +MPM P+   W ++L AC+ H D  +       L++L+PD D  +V 
Sbjct: 519 RSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQ 578

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           L NI+    +W+D  ++R +M  RGV K  G S I   G +H+F+  DRTHPQI EI  M
Sbjct: 579 LYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAM 638

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           ++E+ ++LK  GY+P T ++  D+D+EEKE  L  HSEK+AIAFGLI+++P  P+ I+KN
Sbjct: 639 MEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKN 698

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCH+A K ISR ++REI+VRDR RFHHF+ G+CSC DFW
Sbjct: 699 LRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 438/768 (57%), Gaps = 76/768 (9%)

Query: 62  TFAASRLIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRN-------- 110
           T   S ++K++  +  ++   +   +  +F  +   +   +N M+  Y+  N        
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV 113

Query: 111 ---VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
              +P + +  + +ML+  V   N     L+ A AL   + E  ++  + + +GF  + +
Sbjct: 114 FEKMPDRDLISWNVMLSGYVKNGN-----LSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 168 VN-----------------NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           V                  N L++ Y   G +  AR+LFD     ++VSWN ++ GYV  
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             +++A+ ++++MP R+ I+ N MI  + + G ++EA RLF+E+P +D+ +W+A++S + 
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           QN M +EA  +F  M +     +EV                                   
Sbjct: 289 QNGMLDEATRIFEEMPEK----NEVS---------------------------------- 310

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
             NA+I  Y    +I  A +LFD   + +  SWN+M++GY +CG++++A+ LFD M ++D
Sbjct: 311 -WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW+ MISGYAQ  Q  E L LF++M+  G   + + L   +S+C  + AL+ GK +H 
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG 429

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + K G +   I G  L+ MY K G ++ A +VF    EK + SWN +I G+A +G   +
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +F  MK + + P+++T VGVL AC H G VD+G  +FNSM Q + +  N+KHY CM+
Sbjct: 490 ALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMI 548

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA  L++SMP  PD ATWGALLGA + HGD E+GE+   K+ E++PD+ G
Sbjct: 549 DLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSG 608

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSN++A+ GRW +V E+R  M  +GV K+PG S +E     H F  GD +HP+   
Sbjct: 609 MYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAER 668

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   L+E+  +LK +G+   T  V  D+++EEKE  L  HSEKLA+AFG+++I P  PIR
Sbjct: 669 IYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIR 728

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++KNLR+C DCH A K IS+   R+I+VRD +RFHHF  GSCSC D+W
Sbjct: 729 VIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 203/446 (45%), Gaps = 58/446 (13%)

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           E+K   + + + +I+  N  I  + RKG    A  +F  M ++  V+++A+IS Y  N  
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA------------------GTSV 316
           ++ A  +F  M D R ++   V++S      NL+  +A                  G + 
Sbjct: 107 FDCARKVFEKMPD-RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 317 HAL---AVKIGIECYINLQ---NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           +     A KI  +  +  +   N L+  Y   G I  A +LFD+  + +++SWN ++ GY
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           ++   ++ AR+LFD M  +D +SW+ MI+GYAQ+   SE   LF E+    IR D     
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP---IR-DVFAWT 281

Query: 431 SVISACTHLVALDQGKWIHAYI-RKNGLKINSILG------------------------- 464
           +++S       LD+   I   +  KN +  N+++                          
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 465 -TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             T++  Y + G +D A  +F    ++   SW A+I G+A +G ++++L +F +MK+ G 
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             N       L +C  +  ++ G +    +++    +        ++ + G+ G ++EA 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAG-FQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 584 ELIESMPMSPDVATWGALLGACKKHG 609
           ++ E +    D+ +W  ++    +HG
Sbjct: 461 DVFEDIT-EKDIVSWNTMIAGYARHG 485


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 300/810 (37%), Positives = 448/810 (55%), Gaps = 109/810 (13%)

Query: 98   IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
            ++N ++ A  Q    ++A   Y  M ++ V ++  TY  +  A +   ++  G+LIH H+
Sbjct: 352  VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 158  LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
             + G  SDV + N+LI+MYA CGDL  AR+LF+  P  DL+SWN+I+AGY   ++  EA 
Sbjct: 412  SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 218  FIYNKM------PER------------------------NIIAS---------NSMIVLF 238
             +Y +M      P R                        +I+ S         N+++ ++
Sbjct: 472  KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 239  GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
             R G++ EA  +F+    +D++SW+++I+ + Q+  YE A  LF+ M    +  D++   
Sbjct: 532  RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFA 591

Query: 299  SVLSACANLTVVKAGTSVH--------ALAVKIG---IECYI---NLQNA---------- 334
            SVL  C N   ++ G  +H         L V +G   I  YI   +LQ+A          
Sbjct: 592  SVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR 651

Query: 335  -------LIHMYSSCGEITTAEKLF----------------------------------- 352
                   +I  ++  GE   A +LF                                   
Sbjct: 652  NVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVI 711

Query: 353  ----DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                ++G+ LD    N++IS Y K GS+  AR +FD M  +D++SW+ MI+GYAQ+    
Sbjct: 712  AHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGG 771

Query: 409  ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
              L    +MQ  G+  ++ + VS+++AC+   AL++GK +HA I K  ++ +  +G  LI
Sbjct: 772  TALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALI 831

Query: 469  DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
             MY K G ++ A EVF    EK V +WNA+I  +A +GLA K+L+ F+ M K G+ P+  
Sbjct: 832  SMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGS 891

Query: 529  TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
            TF  +L AC H GLV EG+R F+S+  +H L P  +HYGC+V LLGRAG  +EAE LI  
Sbjct: 892  TFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQ 951

Query: 589  MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
            MP  PD A W  LLGAC+ HG+  + E      ++L   +   +VLLSN++A+ GRWDDV
Sbjct: 952  MPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDV 1011

Query: 649  LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             ++R +M  RG+ K PG S IE + IIHEF+A DR+HP+  EI   L  ++ +++  GY+
Sbjct: 1012 AKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYS 1071

Query: 709  PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
            PDT  V  ++D+E +ET+L  HSE+LAIA+GL+   P  PIRI KNLRIC DCHTA+KFI
Sbjct: 1072 PDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFI 1131

Query: 769  SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            S+   REI+ RD +RFH FK+G CSC DFW
Sbjct: 1132 SKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 154/563 (27%), Positives = 272/563 (48%), Gaps = 72/563 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F+ +   +   +NTM+  Y Q+   ++ I L+  M +  +  D  TY  L  A     
Sbjct: 239 QVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPS 298

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + EGK IH   +  G +SD+ V   L  M+  CGD++ A++  +     D+V +N+++A
Sbjct: 299 MLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIA 358

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
                 + EEA   Y +M    ++ +                                  
Sbjct: 359 ALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSS 418

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                NS+I ++ R G++  A  LF  MPK+DL+SW+A+I+ Y + E   EA+ L+  M 
Sbjct: 419 DVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQ 478

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V    V  + +LSAC N +    G  +H   ++ GI+   +L NAL++MY       
Sbjct: 479 SEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYR------ 532

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    +CGS+ +A+ +F+    +D++SW++MI+G+AQH  
Sbjct: 533 -------------------------RCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           +     LF+EM+  G+ PD+ T  SV+  C +  AL+ G+ IH  I ++GL+++  LG  
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI+MY++ G + +A EVFH    + V SW A+I GFA  G   K+ E+F +M+  G  P 
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPV 687

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           + TF  +L AC     +DEG +    ++     E ++     ++    ++G + +A ++ 
Sbjct: 688 KSTFSSILKACMSSACLDEGKKVIAHILNSG-YELDTGVGNALISAYSKSGSMTDARKVF 746

Query: 587 ESMPMSPDVATWGALLGACKKHG 609
           + MP + D+ +W  ++    ++G
Sbjct: 747 DKMP-NRDIMSWNKMIAGYAQNG 768



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 178/657 (27%), Positives = 314/657 (47%), Gaps = 88/657 (13%)

Query: 25  KPT-INLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           +PT  N +     +Q C   +S  +  +I +QM+  G+  D F ++ LI      +    
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINM---YVKCRS 132

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           +S + ++F  +   +   +N+++  Y Q+   ++A  L++ M          TY  +  A
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTA 192

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                 +  GK IH  +++AG+  D  V N+L+NMY  C DL +AR++F      D+VS+
Sbjct: 193 CCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSY 252

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PER---------------------------- 226
           N++L  Y     VEE   ++ +M      P++                            
Sbjct: 253 NTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVN 312

Query: 227 -----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                +I    ++  +F R G+VA A +  +    +D+V ++ALI+   Q+  YEEA   
Sbjct: 313 EGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQ 372

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           +  M    V+++    +SVL+AC+    + AG  +H+   ++G    + + N+LI MY+ 
Sbjct: 373 YYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYAR 432

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG++  A +LF+     DLISWN++I                               +GY
Sbjct: 433 CGDLPRARELFNTMPKRDLISWNAII-------------------------------AGY 461

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           A+ +   E + L+ +MQ  G++P   T + ++SACT+  A   GK IH  I ++G+K N 
Sbjct: 462 ARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNG 521

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            L   L++MY + G +  A  VF GT  + + SWN++I G A +G  + + ++F EMKK 
Sbjct: 522 HLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKE 581

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ P++ITF  VL  C++   ++ G R  + +I E  L+ +      ++++  R G L++
Sbjct: 582 GLEPDKITFASVLVGCKNPEALELG-RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQD 640

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
           A E+  S+    +V +W A++G     G+        RK  EL  Q  +DGF  + S
Sbjct: 641 AYEVFHSL-RHRNVMSWTAMIGGFADQGED-------RKAFELFWQMQNDGFKPVKS 689



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 229/471 (48%), Gaps = 55/471 (11%)

Query: 212 NVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
           ++ EAK I+ +M E     +I  SN +I ++ +  +V++A ++F +MP++D++SW++LIS
Sbjct: 97  SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
           CY Q    ++A  LF  M     +  ++  +S+L+AC +   ++ G  +H+         
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS--------- 207

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
                                 K+ +AG+  D    NS+++ Y KC  +  AR +F  + 
Sbjct: 208 ----------------------KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY 245

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
            +DVVS++TM+  YAQ     E + LF +M   GI PD+ T ++++ A T    LD+GK 
Sbjct: 246 RRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKR 305

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IH      GL  +  +GT L  M+++ G V  A +      ++ V  +NALI   A +G 
Sbjct: 306 IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH 365

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            +++ E + +M+  GV  N  T++ VL AC   + +G  +  H H + +     ++  + 
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNS 425

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE- 623
               ++ +  R G L  A EL  +MP   D+ +W A++    +  D     ++ +++   
Sbjct: 426 ----LISMYARCGDLPRARELFNTMPKR-DLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 624 -LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
            ++P    F  LLS    S    D      G M+   +++    S I++NG
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSD------GKMIHEDILR----SGIKSNG 521



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 172/386 (44%), Gaps = 44/386 (11%)

Query: 84   SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
            ++++F  L   N   +  M+  +  +   ++A  L+  M N+       T+  + +A   
Sbjct: 641  AYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMS 700

Query: 144  RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
               + EGK +  H+L +G++ D  V N LI+ Y+  G ++ ARK+FD+ P  D++SWN +
Sbjct: 701  SACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKM 760

Query: 204  LAGY-------------------------------VNA----DNVEEAKFIYNKMPER-- 226
            +AGY                               +NA      +EE K ++ ++ +R  
Sbjct: 761  IAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKM 820

Query: 227  --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
              ++    ++I ++ + G++ EA  +F    +K++V+W+A+I+ Y Q+ +  +AL  F  
Sbjct: 821  QGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNC 880

Query: 285  MIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  D     S+LSAC +  +V  G  +  +L  + G+   I     L+ +    G
Sbjct: 881  MDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAG 940

Query: 344  EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMIS 399
                AE L +      D   W +++      G+V  A    +  ++   ++   +  + +
Sbjct: 941  RFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSN 1000

Query: 400  GYAQHDQFSETLSLFMEMQHHGIRPD 425
             YA   ++ +   +   M+  GIR +
Sbjct: 1001 VYAAAGRWDDVAKIRRVMEGRGIRKE 1026



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 20/293 (6%)

Query: 24  FKPTINLSILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           FKP    S   + L+ C S     +  ++++ ++ +G   DT   + LI   +       
Sbjct: 684 FKPV--KSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSK---SGS 738

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M+ + K+F  + + +   +N M+  Y Q  +   A+     M    V ++ +++  +  A
Sbjct: 739 MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNA 798

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            +   ++ EGK +H  ++K     DV V   LI+MYA CG L  A+++FD     ++V+W
Sbjct: 799 CSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTW 858

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPK 256
           N+++  Y       +A   +N M +  I        S++      G V E  R+F  +  
Sbjct: 859 NAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLES 918

Query: 257 KDLVS-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +  +S     +  L+    +   ++EA  L   M       D  V  ++L AC
Sbjct: 919 QHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQM---PFPPDAAVWETLLGAC 968


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/560 (47%), Positives = 372/560 (66%), Gaps = 5/560 (0%)

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYE-QNEMYEEALVLFMNMI-DHRVMVDEVVVVSVL 301
           ++ A  +F   P+ DL  ++ +I           ++   F ++I + R++ ++       
Sbjct: 50  ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAF 109

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
             C +   V  G  V   A+K+G+E  + + NALI MY +   +  A K+FD   N D+ 
Sbjct: 110 KGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMY 169

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           SWN M+SGY + G +++AR LFD M EKDVVSW+TMISG  Q   F E L +F  M   G
Sbjct: 170 SWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKG 229

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P+E TL S ++AC +LVALDQG+W+H YI+KN +++N  L   LIDMY K G ++ A 
Sbjct: 230 MSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFAS 289

Query: 482 EVFHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           ++F+     ++ V  WNA+I GFA++G + +++E+F +MK   V+PN++TFV +L AC H
Sbjct: 290 KLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSH 349

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
              V+EG  +F SM   +R++P  +HYGC+VDLLGRAG LKEAEE+I SM ++PDVA WG
Sbjct: 350 GNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWG 409

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL ACK H D EMGERVG+ + EL P+H G HVLL+NI++  G W++   +R  +   G
Sbjct: 410 ALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESG 469

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI- 718
             K PGCS IE NG+ H+FL GDR+HPQ  ++   LDEM  KLK+ GY P++ EV  DI 
Sbjct: 470 KKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDID 529

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           D E++ET L +HSEKLAIAFGL+  +P  PIRI+KNLR+C+DCH A KFIS+ +DREI+V
Sbjct: 530 DNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIV 589

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RDR R+HHFK G+CSC D+W
Sbjct: 590 RDRIRYHHFKDGTCSCNDYW 609



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/570 (24%), Positives = 248/570 (43%), Gaps = 109/570 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C+SF+Q  Q+ +++I TGLI      ++L+K  + +  F  +SY+  +F     P+ 
Sbjct: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSI--FAPISYAHMVFDHFPQPDL 65

Query: 97  FIFNTMMR--AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           F++NT+++  A+   +          L+    +  + Y++    +     + V EG+ + 
Sbjct: 66  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            H +K G +++++V N LI MY                               VN D V 
Sbjct: 126 VHAIKLGLENNLFVTNALIGMY-------------------------------VNLDFVV 154

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ +++  P R++ + N M+  + R G + EA +LF EMP+KD+VSW+ +IS   Q   
Sbjct: 155 DARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGY 214

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           + EAL +F NM+   +  +E  + S L+ACANL  +  G  +H    K  I+    L   
Sbjct: 215 FMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAG 274

Query: 335 LIHMYSSCGEITTAEKLFDAGHNL--DLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           LI MY+ CGE+  A KLF++   L   +  WN+MI G                       
Sbjct: 275 LIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGG----------------------- 311

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                   +A H +  E + +F +M+   + P++ T V++++AC+H   +++G++    +
Sbjct: 312 --------FAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESM 363

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
                                           H   +  +  +  L+      G   ++ 
Sbjct: 364 AS------------------------------HYRVKPELEHYGCLVDLLGRAGRLKEAE 393

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV-- 570
           E+ S M    +TP+   +  +L AC+     + G R    +++E  L+PN  H GC V  
Sbjct: 394 EIISSMH---LTPDVAIWGALLSACKIHKDAEMGER-VGKIVKE--LDPN--HLGCHVLL 445

Query: 571 -DLLGRAGMLKEAEELIESMPMSPDVATWG 599
            ++    G   EA  L E +  S    T G
Sbjct: 446 ANIYSLTGNWNEARTLREKIAESGKKKTPG 475


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/629 (41%), Positives = 383/629 (60%), Gaps = 39/629 (6%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N ++  Y   G +  AR+LF+     +L+SWN ++ GYV  + + +A+ I+++MPER+ +
Sbjct: 177 NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 236

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           + N+MI  + + G + EA RLF+E P +D+ +W+A++S Y QN M +EA  +F  M +  
Sbjct: 237 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 296

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
            +                                         NA+I  Y  C  +  A 
Sbjct: 297 SVS---------------------------------------WNAIIAGYVQCKRMDQAR 317

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +LF+A    ++ SWN+MI+GY + G + +AR  FD M ++D +SW+ +I+GYAQ     E
Sbjct: 318 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L LF+EM+  G R + +T  S +S C  + AL+ GK +H  + K GL+    +G  L+ 
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 437

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +D+A  VF G EEK V SWN +I G+A +G   ++L +F  MKK+G+ P+++T
Sbjct: 438 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 497

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            VGVL AC H GLVD+G  +F SM Q++ +  NSKHY CM+DLLGRAG L +A+ L+++M
Sbjct: 498 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 557

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  PD ATWGALLGA + HG+ E+GE+  + + E++PD+ G +VLLSN++A+ GRW DV 
Sbjct: 558 PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVG 617

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            +R  M  RGV K+PG S +E    IH F  GD  HP+ + I   L+E+  K+K EGY  
Sbjct: 618 RMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVS 677

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
            T  V  D+++EEK   L  HSEKLA+AFG++ I    PIR++KNLR+C DCH A K IS
Sbjct: 678 STKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHIS 737

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   R I++RD HRFHHF  G CSC D+W
Sbjct: 738 KIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  198 bits (504), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 144/543 (26%), Positives = 253/543 (46%), Gaps = 91/543 (16%)

Query: 20  AKPIFK--PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
           A+ +F+  PT +L      +  C  ++             L+ D      ++ ++  L  
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRA-------ARLLFDQMPERDVVSWNAMLSG 151

Query: 78  FIEMSY---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           + +  Y   + +IF  +   N   +N M+ AY+Q    + A    + +  +    +  ++
Sbjct: 152 YAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA----RRLFESKADWELISW 207

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
             +      R  + + + I D +     + D    NT+I+ YA  G+L  A++LF+ESPV
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMISGYAQNGELLEAQRLFEESPV 263

Query: 195 LDL-------------------------------VSWNSILAGYVNADNVEEAKFIYNKM 223
            D+                               VSWN+I+AGYV    +++A+ ++  M
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM 323

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
           P +N+ + N+MI  + + G++A+A   F  MP++D +SW+A+I+ Y Q+   EEAL LF+
Sbjct: 324 PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFV 383

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE--CYINLQNALIHMYSS 341
            M      ++     S LS CA +  ++ G  VH   VK G+E  CY+   NAL+ MY  
Sbjct: 384 EMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG--NALLVMYCK 441

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG I  A  +F+     +++SWN+MI+GY                               
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGY------------------------------- 470

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKIN 460
           A+H    E L LF  M+  GI PD+ T+V V+SAC+H   +D+G ++ ++  +  G+  N
Sbjct: 471 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 530

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG---LADKSLEMFS 516
           S   T +ID+  + G +D+A  +      E   ++W AL+    ++G   L +K+ +M  
Sbjct: 531 SKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIF 590

Query: 517 EMK 519
           EM+
Sbjct: 591 EME 593



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 217/474 (45%), Gaps = 72/474 (15%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D+D+   N  I  +   G   +A +LF+  P    +SWN++++G ++ D    A+ ++ K
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MP R++++ N MI    R  N+  A  LF +MP++D+VSW+A++S Y QN   +EA  +F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
                     DE+   + +S                              N ++  Y   
Sbjct: 166 ----------DEMPCKNSIS-----------------------------WNGMLAAYVQN 186

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G I  A +LF++  + +LISWN M+ GY+K   +  AR +FD M E+D VSW+TMISGYA
Sbjct: 187 GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 246

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINS 461
           Q+ +  E   LF E     +R D  T  +++S       LD+ + +      KN +  N+
Sbjct: 247 QNGELLEAQRLFEESP---VR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA 302

Query: 462 ILG--------------------------TTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           I+                            T+I  Y + G +  A   F    ++   SW
Sbjct: 303 IIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 362

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
            A+I G+A +G  +++L +F EMK+ G   N  TF   L  C  +  ++ G +  +  + 
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG-KQVHGRVV 421

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  LE        ++ +  + G + +A  + E +    +V +W  ++    +HG
Sbjct: 422 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHG 474



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 158/384 (41%), Gaps = 87/384 (22%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   +N ++  Y+Q     QA  L++ M   NV                  
Sbjct: 287 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----------------- 329

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
                                   NT+I  YA  GD++ AR  FD  P  D +SW +I+A
Sbjct: 330 ----------------------SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 367

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
           GY  +   EEA  ++ +M                                        E 
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 427

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N+++V++ + GN+ +A  +F+ + +K++VSW+ +I+ Y ++   +EAL+LF +M 
Sbjct: 428 GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK 487

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              ++ D+V +V VLSAC++  +V  GT   +++    GI         +I +    G +
Sbjct: 488 KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRL 547

Query: 346 TTAEKLF-DAGHNLDLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMISG 400
             A+ L  +     D  +W +++      G+ E     A+ +F+  +E D      ++S 
Sbjct: 548 DDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE--MEPDNSGMYVLLSN 605

Query: 401 -YAQHDQFSETLSLFMEMQHHGIR 423
            YA   ++ +   + + M+  G++
Sbjct: 606 LYAASGRWGDVGRMRLRMRDRGVK 629



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 128/301 (42%), Gaps = 53/301 (17%)

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISG-------YLKCGSVEK----------------- 378
           G+  +A +LF++      ISWN+MISG       YL     EK                 
Sbjct: 63  GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCV 122

Query: 379 -------ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                  AR LFD M E+DVVSW+ M+SGYAQ+    E   +F          DE    +
Sbjct: 123 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF----------DEMPCKN 172

Query: 432 VISACTHLVALDQGKWIHAYIR--KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            IS    L A  Q   I    R  ++      I    ++  Y+K   + +A  +F    E
Sbjct: 173 SISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPE 232

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SWN +I G+A NG   ++  +F E     V     T+  ++      G++DE  R 
Sbjct: 233 RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRV 288

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F+ M      E NS  +  ++    +   + +A EL E+MP   +V++W  ++    ++G
Sbjct: 289 FDGMP-----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNG 342

Query: 610 D 610
           D
Sbjct: 343 D 343



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 118/287 (41%), Gaps = 70/287 (24%)

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           + D++ WN  I+ +++ G  + A  LF++M  +  +SW+ MISG   +D+F     LF +
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M       D  +   +IS C               +R   L+   +L             
Sbjct: 106 MPTR----DLVSWNVMISGC---------------VRYRNLRAARLL------------- 133

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
                  F    E+ V SWNA++ G+A NG   ++ E+F EM       N I++ G+L A
Sbjct: 134 -------FDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAA 182

Query: 537 CRHMGLVDEGHRHFNS---------------MIQEHRL-----------EPNSKHYGCMV 570
               G +++  R F S                ++ +RL           E +   +  M+
Sbjct: 183 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
               + G L EA+ L E  P+  DV TW A++    ++G  +   RV
Sbjct: 243 SGYAQNGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGMLDEARRV 288


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/722 (39%), Positives = 421/722 (58%), Gaps = 47/722 (6%)

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
           L  NN    +  T P+L    A +  +   K +H H+L+ G   D      L    A+  
Sbjct: 20  LTANNEQKSNPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSS 76

Query: 181 --DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---PER--------- 226
              L  A K+FD+ P  +L +WN+++  + ++    +   ++ +M    +R         
Sbjct: 77  PSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPF 136

Query: 227 ----------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                       ++  SNS+I  +   G++  A  +F ++ +KD
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           +VSW+++IS + Q    EEAL LF  M       + V +V VLSACA    ++ G     
Sbjct: 197 IVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
              + GI+  + L NA++ MY  CG +  A +LFD     D++SW +MI GY K G  + 
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACT 437
           AR +FD M  +D+ +W+ +IS Y Q+ +  E L++F E+Q +   +P+E TL S ++AC 
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
            L A+D G WIH YI+K G+K+N  + T+LIDMY K G ++ ALEVF+  E + V  W+A
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G AM+G    ++++FS+M+++ V PN +TF  +L AC H GLVDEG   FN M   +
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVY 496

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            + P SKHY CMVD+LGRAG L+EA ELIE MP+ P  + WGALLGAC+ +G+ E+ E  
Sbjct: 497 GVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMA 556

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
             +L+E   ++ G +VLLSNI+A  G+WD V  +R  M   G+ K PGCS IE NGIIHE
Sbjct: 557 CSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHE 616

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAI 736
           FL GD +HP   EI + LDE+  ++K  GY  D   +   +++E  KE  L  HSEKLAI
Sbjct: 617 FLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAI 676

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           A+GLI + P  PIRI+KNLR+C DCH+ AK IS+ ++R+I++RDR+RFHHF  G+CSCMD
Sbjct: 677 AYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMD 736

Query: 797 FW 798
           +W
Sbjct: 737 YW 738



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 160/640 (25%), Positives = 282/640 (44%), Gaps = 147/640 (22%)

Query: 29  NLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           N S +   + KC + K   Q+ + M+ TGL  D  +A++L        P   + Y+ K+F
Sbjct: 29  NPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPS-SLDYACKVF 87

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSV 147
             +  PN + +NT++RA+     P Q + ++  ML+ +    N YT+P + +A+    S+
Sbjct: 88  DQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSL 147

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
             G+ IH  V+KA F SD++++N+LI+ Y+  GDL +A  +F +    D+VSWNS+++G+
Sbjct: 148 LAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGF 207

Query: 208 VNADNVEEAKFIYNKM------PER---------------------------------NI 228
           V   + EEA  ++ +M      P R                                 N+
Sbjct: 208 VQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINL 267

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS------------------------- 263
           I SN+M+ ++ + G++ +A RLF +M +KD+VSW+                         
Sbjct: 268 ILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPRE 327

Query: 264 ------ALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
                 ALIS Y+QN   +EAL +F  + ++     +EV + S L+ACA L  +  G  +
Sbjct: 328 DITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWI 387

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H    K GI+   ++  +LI MYS CG +  A ++F +    D+  W++MI         
Sbjct: 388 HVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMI--------- 438

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
                                 +G A H      + LF +MQ   ++P+  T  +++ AC
Sbjct: 439 ----------------------AGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCAC 476

Query: 437 THLVALDQGKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           +H   +D+G+     +R   G+   S     ++D+  + GC++ A+E+            
Sbjct: 477 SHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVEL------------ 524

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
                                 ++K  + P+   +  +LGACR  G V+        M  
Sbjct: 525 ----------------------IEKMPIVPSASVWGALLGACRIYGNVE-----LAEMAC 557

Query: 556 EHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESMPMS 592
              LE +S ++G  V   ++  +AG       L + M +S
Sbjct: 558 SRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVS 597


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/686 (40%), Positives = 405/686 (59%), Gaps = 69/686 (10%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           K IH  +L+     D +  + ++   A+   G L  AR +F++ P     + NSI+ GY 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 209 NADNVEEAKFIYNKM------PERNIIAS------------------------------N 232
           N +   +A   Y  M      P+R    S                              N
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQN 176

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ ++   G +  A ++F +M  K +VSW+ +I  Y Q ++  EA+ LF  M    V  
Sbjct: 177 TLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKP 236

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +E+ +V+VL+ACA    ++    VH    + GI  +  L +AL+ +Y             
Sbjct: 237 NEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYC------------ 284

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                              KCG    AR LF+ M EK++  W+ MI+G+ +   + E LS
Sbjct: 285 -------------------KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALS 325

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF EMQ  G++ D+ T+ S++ ACTHL AL+ GKW+H YI K  ++++  LGT L+DMY 
Sbjct: 326 LFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYA 385

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +++A+ VF    EK V +W ALI+G AM G   K+LE+F EM+ S V P+ ITFVG
Sbjct: 386 KCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVG 445

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC H GLV+EG  +FNSM  ++ ++P+ +HYGCMVD+LGRAG + EAE+LI++MPM+
Sbjct: 446 VLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMA 505

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PD      LL AC+ HG+  + ER  ++L+EL P + G +VLLSNI++S   W+   ++R
Sbjct: 506 PDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMR 565

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            +MV R + K PGCS IE  G++HEF+ GD +HPQ +EI   LD+M ++LK  GY PD  
Sbjct: 566 ELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKS 625

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
           EV FD+D++EKE  L  HSEKLAIAFGL++ +P  PIR++KNLR+C+DCH+A KFIS  +
Sbjct: 626 EVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVY 685

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           +REI+VRDR+RFHHF  GSCSC DFW
Sbjct: 686 NREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 154/559 (27%), Positives = 260/559 (46%), Gaps = 109/559 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+KC +  Q  QI +QM+ T L  D F+AS+++ F   L     + Y+  +F  + +P  
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCA-LHDSGSLPYARLVFNQIPNPTT 105

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F  N+++R Y  +N+P+QAI  Y+LM+   +  D +T+P L ++  +   + EGK +H H
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGKQLHCH 162

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD----- 211
             K GF SD Y+ NTL+NMY+ CG L +ARK+FD+     +VSW +++  Y   D     
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 222

Query: 212 ------------------------------NVEEAKFIYNKMPERNI----IASNSMIVL 237
                                         ++E AK ++  + E  I    + +++++ +
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDV 282

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G    A  LF +MP+K+L  W+ +I+ + ++  YEEAL LF  M    V  D+V +
Sbjct: 283 YCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 342

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+L AC +L  ++ G  +H    K  IE  + L  AL+ MY+ CG I +A ++F     
Sbjct: 343 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D+++W ++I G   CG   KA                               L LF EM
Sbjct: 403 KDVMTWTALIVGLAMCGQGLKA-------------------------------LELFHEM 431

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           Q   ++PD  T V V++AC+H   +++G  + ++   K G++ +       I+ Y   GC
Sbjct: 432 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS-------IEHY---GC 481

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + + L                        G A +  E    ++   + P+    VG+L A
Sbjct: 482 MVDML------------------------GRAGRIAEAEDLIQNMPMAPDYFVLVGLLSA 517

Query: 537 CRHMGLVDEGHRHFNSMIQ 555
           CR  G +    R    +I+
Sbjct: 518 CRIHGNLVVAERAAQQLIE 536


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/726 (38%), Positives = 431/726 (59%), Gaps = 38/726 (5%)

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLL 137
           + + Y+  +F  +  P+ F+F+T +RA  +    P +   L++ M    V  D +T+  L
Sbjct: 51  LHLRYALHLFDRM-PPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFL 109

Query: 138 AQASALRL---SVFEGKLIHDHVLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESP 193
            + S+      S+    ++H   L+    S   +V+N+LI+MY   G  + AR+ FDE  
Sbjct: 110 FKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIH 169

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           V D V+W  +++G                                 + G + +   L  +
Sbjct: 170 VKDAVAWTMLISG-------------------------------LAKMGMLCDTQLLLSQ 198

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
            P +D++SW++LI+ Y +     EA+  F  M+ H +  DEV V++VLSACA L  ++ G
Sbjct: 199 APVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELG 258

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLK 372
            S+H L  + G+    NL  ALI MY+ CG+   A+++FDA G      SWN++I GY K
Sbjct: 259 RSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK 318

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G V+ AR+LFD M  +D++++++M++GY    Q  E L LFM M+ H +R D  T+V++
Sbjct: 319 HGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNL 378

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           ++AC  L AL QG+ +HA I +  ++ +  LGT L+DMYMK G VD A  VF    ++ V
Sbjct: 379 LTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDV 438

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +W A+I G A NG+   +LE F +M+  G  PN ++++ VL AC H  L++EG  +F+ 
Sbjct: 439 HTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDE 498

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M   + + P  +HYGCM+DLLGR+G+L EA +L+++MP+ P+   W ++L AC+ H   +
Sbjct: 499 MRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHID 558

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           + +     L++L+PD DG +V L NI+    +W++  ++R +M  R V K  G S I   
Sbjct: 559 LAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVA 618

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G +H+F+  D++HP+I EI  ML+E++ +LK  GY+P T ++  D+D+EEKE  L  HSE
Sbjct: 619 GQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSE 678

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAFGLI ++P  P+ I KNLR+C DCH+A K ISR ++REI+VRDR RFHHF+ G+C
Sbjct: 679 KLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTC 738

Query: 793 SCMDFW 798
           SC DFW
Sbjct: 739 SCNDFW 744


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/687 (41%), Positives = 403/687 (58%), Gaps = 70/687 (10%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           K IH  +L+ G   D +  + ++   ++   G L  AR +F + P     + NSI+ G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 209 NADNVEEAKFIYNKM------PER------------------------------NIIASN 232
           + +  +EA   Y +M      P+R                              +  A N
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQN 124

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVM 291
           +++ ++   G +  A ++F +M  K +VSW+ +I  + Q +   EA+ LF  M+    V 
Sbjct: 125 TLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVK 184

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +EV +V+VL+ACA    +     +H    + G   ++ L   L+ +Y            
Sbjct: 185 PNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYC----------- 233

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCG V+ AR LFD   EK++ SW+ MI+G+ +   + E L
Sbjct: 234 --------------------KCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEAL 273

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF EMQ  GI+ D+ T+ S++ ACTHL AL+ GKW+HAYI+K  + ++  LGT L+DMY
Sbjct: 274 LLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMY 333

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G ++ A++VFH   EK V +W ALI+G AM G A+ +L+ F EM   GV P+ ITFV
Sbjct: 334 AKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFV 393

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H G VDEG  HFNSM   + ++P  +HYG +VD+LGRAG + EAEELI+SMPM
Sbjct: 394 GVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPM 453

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
           +PD    G LLGAC+ HG+ E  ER  ++L+E+ P H G +VLLSNI+ S  +W++    
Sbjct: 454 APDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRT 513

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  RG+ K PGCS IE +G++HEF+ GD +H Q +EI+ ML++M  KLK  GY PD 
Sbjct: 514 RELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDK 573

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            EV FD+ +EEKET L  HSEKLAIAFGL++ S   PIR++KNLRIC+DCH+A K IS+ 
Sbjct: 574 SEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKL 633

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++REI+VRDR+RFHHFK G+CSC  FW
Sbjct: 634 YNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 146/551 (26%), Positives = 248/551 (45%), Gaps = 108/551 (19%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI +QM+ TGL  D F AS+++ F + L     + Y+  +F+ + +P  +  N+++R
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCS-LQESGSLQYARLVFSQIPNPTSYTCNSIIR 61

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
               +N+ Q+A+  Y+ M+   +  D YT+P L ++     +  EGK IH H  K GF S
Sbjct: 62  GCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCR---NSSEGKQIHCHSTKLGFAS 118

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D Y  NTL+NMY+ CG L +ARK+FD+     +VSW +++  +   D   EA  ++++M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 225 ERNIIASNSMIVL--------------------------FGRK--------------GNV 244
           +   +  N + ++                          FGR               G V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             A  LF +  +K+L SW+ +I+ + ++  YEEAL+LF  M    +  D+V + S+L AC
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
            +L  ++ G  +HA   K  I+  + L  AL+ MY+ CG I TA ++F      D+++W 
Sbjct: 299 THLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           ++I G   CG  E A   FD                               EM   G++P
Sbjct: 359 ALILGLAMCGQAENALQYFD-------------------------------EMHIKGVKP 387

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T V V++AC+H   +D+G                      I  +       N++   
Sbjct: 388 DAITFVGVLAACSHAGFVDEG----------------------ISHF-------NSMSDT 418

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +G +   +  +  L+      G   ++ E+   M    + P++    G+LGACR  G ++
Sbjct: 419 YGIQPT-IEHYGGLVDILGRAGRIAEAEELIKSMP---MAPDQFVLGGLLGACRIHGNLE 474

Query: 545 EGHRHFNSMIQ 555
              R    +++
Sbjct: 475 AAERAAKQLLE 485



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 44/359 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            + C++  +  QI       G  +DT+A + L+   ++    +    + K+F  +E    
Sbjct: 95  FKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVS---ARKVFDKMEDKTV 151

Query: 97  FIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
             + TM+  + Q + P +A+ L+ ++M + NV  +  T   +  A A    +   K IH+
Sbjct: 152 VSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHE 211

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           ++ + GF   V +N  L+++Y  CG +  AR LFD++   +L SWN ++ G+V   N EE
Sbjct: 212 YIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEE 271

Query: 216 AKFIYNKMPERNI------IAS---------------------------------NSMIV 236
           A  ++ +M  + I      +AS                                  +++ 
Sbjct: 272 ALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVD 331

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G++  A ++F EMP+KD+++W+ALI         E AL  F  M    V  D + 
Sbjct: 332 MYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAIT 391

Query: 297 VVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
            V VL+AC++   V  G S  ++++   GI+  I     L+ +    G I  AE+L  +
Sbjct: 392 FVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKS 450


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/727 (39%), Positives = 435/727 (59%), Gaps = 68/727 (9%)

Query: 63  FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           +A S+L++F      F  + Y+  +F  +  PN  I+N M R +   + P  A+ LY +M
Sbjct: 7   YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
           ++  +  + +T+P L ++ A   +  EG+ IH HVLK GFD D+YV+ +LI+MYA  G L
Sbjct: 67  ISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRL 126

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242
                                          E+A+ ++++   R++++  ++I  +  +G
Sbjct: 127 -------------------------------EDAQKVFDRSSHRDVVSYTALITGYASRG 155

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            +  A ++F E+P KD+VSW+A+IS Y +   Y++AL LF  M+   V  DE  + +V+S
Sbjct: 156 YIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVS 215

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           ACA    ++ G  VH+     G    + + NALI +YS                      
Sbjct: 216 ACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYS---------------------- 253

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
                    KCG VE A  L + +  KDV+SW+T+I GY   + + E L LF EM   G 
Sbjct: 254 ---------KCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 304

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKN--GLKIN--SILGTTLIDMYMKLGCVD 478
            P++ T++S++ AC HL A+D G+WIH YI K   G+ +   S L T+LIDMY K G +D
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364

Query: 479 NALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            A +V   +   + +S+WNA+I GFAM+G A+ + ++FS M+K+G+ P++ITFVG+L AC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H G++D G   F SM Q++ + P  +HYGCM+DLLG +G+ KEAEE+I +MPM PD   
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           W +LL ACK HG+ E+GE   +KL++++P++ G +VLLSNI+A+ G+W++V ++R ++  
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLND 544

Query: 658 RGV-VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
           +G+  K+PGCS IE + ++HEF+ GD+ HPQ  EI  ML+EM   L+  G+ PDT EV  
Sbjct: 545 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 604

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           ++++E KE  L  HSEKLAIAFGLI+  P   + I+KNLR+C +CH A K IS+ + REI
Sbjct: 605 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 664

Query: 777 VVRDRHR 783
           + RDR R
Sbjct: 665 IARDRTR 671


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/629 (41%), Positives = 383/629 (60%), Gaps = 39/629 (6%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N ++  Y   G +  AR+LF+     +L+SWN ++ GYV  + + +A+ I+++MPER+ +
Sbjct: 96  NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           + N+MI  + + G + EA RLF+E P +D+ +W+A++S Y QN M +EA  +F  M +  
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 215

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
            +                                         NA+I  Y  C  +  A 
Sbjct: 216 SVS---------------------------------------WNAIIAGYVQCKRMDQAR 236

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +LF+A    ++ SWN+MI+GY + G + +AR  FD M ++D +SW+ +I+GYAQ     E
Sbjct: 237 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L LF+EM+  G R + +T  S +S C  + AL+ GK +H  + K GL+    +G  L+ 
Sbjct: 297 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 356

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +D+A  VF G EEK V SWN +I G+A +G   ++L +F  MKK+G+ P+++T
Sbjct: 357 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 416

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            VGVL AC H GLVD+G  +F SM Q++ +  NSKHY CM+DLLGRAG L +A+ L+++M
Sbjct: 417 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 476

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  PD ATWGALLGA + HG+ E+GE+  + + E++PD+ G +VLLSN++A+ GRW DV 
Sbjct: 477 PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVG 536

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            +R  M  RGV K+PG S +E    IH F  GD  HP+ + I   L+E+  K+K EGY  
Sbjct: 537 RMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVS 596

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
            T  V  D+++EEK   L  HSEKLA+AFG++ I    PIR++KNLR+C DCH A K IS
Sbjct: 597 STKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHIS 656

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   R I++RD HRFHHF  G CSC D+W
Sbjct: 657 KIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 240/503 (47%), Gaps = 82/503 (16%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSY---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ 114
           L+ D      ++ ++  L  + +  Y   + +IF  +   N   +N M+ AY+Q    + 
Sbjct: 51  LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIED 110

Query: 115 AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174
           A    + +  +    +  ++  +      R  + + + I D +     + D    NT+I+
Sbjct: 111 A----RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMIS 162

Query: 175 MYAVCGDLSAARKLFDESPVLDL-------------------------------VSWNSI 203
            YA  G+L  A++LF+ESPV D+                               VSWN+I
Sbjct: 163 GYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAI 222

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           +AGYV    +++A+ ++  MP +N+ + N+MI  + + G++A+A   F  MP++D +SW+
Sbjct: 223 IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWA 282

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+I+ Y Q+   EEAL LF+ M      ++     S LS CA +  ++ G  VH   VK 
Sbjct: 283 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA 342

Query: 324 GIE--CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           G+E  CY+   NAL+ MY  CG I  A  +F+     +++SWN+MI+GY           
Sbjct: 343 GLESGCYVG--NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY----------- 389

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
                               A+H    E L LF  M+  GI PD+ T+V V+SAC+H   
Sbjct: 390 --------------------ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 429

Query: 442 LDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +D+G ++ ++  +  G+  NS   T +ID+  + G +D+A  +      E   ++W AL+
Sbjct: 430 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 489

Query: 500 IGFAMNG---LADKSLEMFSEMK 519
               ++G   L +K+ +M  EM+
Sbjct: 490 GASRIHGNTELGEKAAKMIFEME 512



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 158/384 (41%), Gaps = 87/384 (22%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   +N ++  Y+Q     QA  L++ M   NV                  
Sbjct: 206 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----------------- 248

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
                                   NT+I  YA  GD++ AR  FD  P  D +SW +I+A
Sbjct: 249 ----------------------SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 286

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
           GY  +   EEA  ++ +M                                        E 
Sbjct: 287 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 346

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N+++V++ + GN+ +A  +F+ + +K++VSW+ +I+ Y ++   +EAL+LF +M 
Sbjct: 347 GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK 406

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              ++ D+V +V VLSAC++  +V  GT   +++    GI         +I +    G +
Sbjct: 407 KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRL 466

Query: 346 TTAEKLF-DAGHNLDLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMISG 400
             A+ L  +     D  +W +++      G+ E     A+ +F+  +E D      ++S 
Sbjct: 467 DDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE--MEPDNSGMYVLLSN 524

Query: 401 -YAQHDQFSETLSLFMEMQHHGIR 423
            YA   ++ +   + + M+  G++
Sbjct: 525 LYAASGRWGDVGRMRLRMRDRGVK 548



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 22/246 (8%)

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           + G ++  ++  AR LFD M E+DVVSW+ M+SGYAQ+    E   +F          DE
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF----------DE 86

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIR--KNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
               + IS    L A  Q   I    R  ++      I    ++  Y+K   + +A  +F
Sbjct: 87  MPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 146

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               E+   SWN +I G+A NG   ++  +F E     V     T+  ++      G++D
Sbjct: 147 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLD 202

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           E  R F+ M      E NS  +  ++    +   + +A EL E+MP   +V++W  ++  
Sbjct: 203 EARRVFDGMP-----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG 256

Query: 605 CKKHGD 610
             ++GD
Sbjct: 257 YAQNGD 262


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/712 (39%), Positives = 424/712 (59%), Gaps = 49/712 (6%)

Query: 132 YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLF 189
           +T  L+ + S+LR    + K  H H+++ G  SD Y  + L  + A+     L  ARK+F
Sbjct: 33  HTISLIDRCSSLR----QLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVF 88

Query: 190 DESPVLDLVSWNSILAGYVNADN------------VEEAKFIYNKMP------------- 224
           DE P  +  +WN+++  Y +  +              E++   NK               
Sbjct: 89  DEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSS 148

Query: 225 ----------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                             ++  +NS+I  +   G++  AC++F  + +KD+VSW+++I+ 
Sbjct: 149 LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 208

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           + Q    ++AL LF  M    V    V +V VLSACA +  ++ G  V +   +  +   
Sbjct: 209 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVN 268

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + L NA++ MY+ CG I  A++LFDA    D ++W +M+ GY      E AR + +AM +
Sbjct: 269 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPK 328

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKW 447
           KD+V+W+ +IS Y Q+ + +E L +F E+Q    I+ ++ TLVS +SAC  + AL+ G+W
Sbjct: 329 KDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRW 388

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IH+YI+KNG+K+N  + + LI MY K G ++ A EVF+  E++ V  W+A+I G AM+G 
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGC 448

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             ++++MF +M+++ V PN +TF  V  AC H GLVDE    F  M   + + P  KHY 
Sbjct: 449 GSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYA 508

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           C+VD+LGR+G L++A + IE+MP+ P  + WGALLGACK H +  + E    +L+EL+P 
Sbjct: 509 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPR 568

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
           +DG HVLLSNI+A  G+WD+V E+R  M   G+ K PGCS IE +G+IHEFL+GD  HP 
Sbjct: 569 NDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 628

Query: 688 INEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPP 746
             ++   L E+ +KLK  GY P+   V   I++EE KE +L  HSEKLAI +GLI+   P
Sbjct: 629 SEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAP 688

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             IR++KNLR+C DCH  AK IS+ ++REI+VRDR+RFHHF++G CSC DFW
Sbjct: 689 KAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 251/538 (46%), Gaps = 107/538 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + +C S +Q  Q  + MI TG+ +D ++AS+L   +  L  F  + Y+ K+F  +  PN 
Sbjct: 38  IDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAA-LSSFASLEYARKVFDEIPQPNS 96

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIH 154
           F +NT++RAY     P  +I  +  M+++      + YT+P L +A+A   S+  G+ +H
Sbjct: 97  FTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH 156

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              +K+   SDV+V N+LI+ Y  CGDL +A K+F      D+VSWNS++ G+V   + +
Sbjct: 157 GMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 216

Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
           +A  ++ KM   ++ AS                                       N+M+
Sbjct: 217 KALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAML 276

Query: 236 VLFGRKGNVAEACRLF-------------------------------KEMPKKDLVSWSA 264
            ++ + G++ +A RLF                                 MPKKD+V+W+A
Sbjct: 277 DMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNA 336

Query: 265 LISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           LIS YEQN    EAL++F  + +   + ++++ +VS LSACA +  ++ G  +H+   K 
Sbjct: 337 LISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKN 396

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           GI+    + +ALIHMYS CG++  A ++F++    D+  W++M                 
Sbjct: 397 GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAM----------------- 439

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                         I G A H   SE + +F +MQ   ++P+  T  +V  AC+H   +D
Sbjct: 440 --------------IGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 485

Query: 444 QGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           + + +   +  + G+         ++D+  + G ++ A++           S W AL+
Sbjct: 486 EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 543


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 306/758 (40%), Positives = 436/758 (57%), Gaps = 99/758 (13%)

Query: 10  LSSTIKSSVNAKPI--FKPTIN--LSILETH-----LQKCQSFKQFTQILSQMILTGLIA 60
           L+S   S V   P   F+PT +    +L+ H     L  C+SF+   QI SQ+I TGL  
Sbjct: 3   LASFSPSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHN 62

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
             FA S+LI+F   + PF  +SY+  +F  +E PN FI+NTM+R     + P  AI  Y 
Sbjct: 63  TQFALSKLIEFCA-ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYV 121

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            ML   V  ++YT+P L ++ A   +  EGK IH HVLK G +SD +V+ +LINMYA  G
Sbjct: 122 RMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNG 181

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240
           +L  A  +F +S + D VS+ +++ G                               +  
Sbjct: 182 ELGYAELVFSKSSLRDAVSFTALITG-------------------------------YTL 210

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +G + +A RLF+E+P +D VSW+A+I+ Y Q+  +EEAL  F  M    V  +E  +V+V
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           LSACA    ++ G  V +     G+   + L NALI MYS                    
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYS-------------------- 310

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KCG ++KAR LF+ + EKD++SW+ MI GY+  + + E L+LF +MQ  
Sbjct: 311 -----------KCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQS 359

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI-NSILGTTLIDMYMKLGCVDN 479
            + P++ T VS++ AC +L ALD GKWIHAYI K  L + N+ L T+LIDMY K G ++ 
Sbjct: 360 NVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEA 419

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A +VF G + K + SWNA+I G AM+G A+ +LE+F +M+  G  P++ITFVGVL AC H
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV+ G + F+SM++++ + P  +HYGCM+DLLGRAG+  EAE L+++M M PD A WG
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           +LLGAC+ HG+ E+GE   + L EL+P++ G +VLLSNI+A+ GRWDDV  +R  +  +G
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL-KLEGYAPDTLEVAFDI 718
           + K                           +I  MLDE+ +   +  G  PDT EV +D+
Sbjct: 600 MKK-------------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYDM 634

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           D+E KE +L  HSEKLAIAFGLI+  P   IRI+KNLR
Sbjct: 635 DEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/588 (46%), Positives = 377/588 (64%), Gaps = 33/588 (5%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           N+  A ++F+ +P  ++  ++ +I  C + NE  +     +  MI H    ++    ++ 
Sbjct: 79  NLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAH-ARPNKFTYPTLF 137

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS-------------------- 341
            AC      + G  VHA  +K G+   +++++A I MY S                    
Sbjct: 138 KACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVI 197

Query: 342 -----------CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
                      CGE+  A++LF +  + ++ SWN M+SG  KCG +E+AR LF+ M EK+
Sbjct: 198 CFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKN 257

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SWS MI GY +   + E L +F  MQ   IRP +  L SV++AC +L ALDQG+WIHA
Sbjct: 258 EISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHA 317

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y+  N    +++LGT L+DMY K G +D A +VF   E+K V +WNA+I G  M+G A+ 
Sbjct: 318 YVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAED 377

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E+F +M+K    PN IT +GVL AC H G+VDEG R FNSM + + +EP  +HYGC+V
Sbjct: 378 AIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVV 437

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG+L EAEE++ SMPM P  A WGALLGAC+KHGD E+GERVG+ L+EL+P + G
Sbjct: 438 DLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSG 497

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            + LLSNI+A  GRWDDV  VR +M  RGV    G SMI+ +G++HEF  GD +HPQ+  
Sbjct: 498 RYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKN 557

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  ML  M K+LK+EG++P+T +V FDI++EEKE  L  HSEKLAIAFGLI   P   I 
Sbjct: 558 IYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIH 617

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++KNLR+C DCH+A K IS+ +DREI+VRDR R+HHFK G+CSC DFW
Sbjct: 618 VVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 161/582 (27%), Positives = 272/582 (46%), Gaps = 77/582 (13%)

Query: 1   MTLATKLA-HLSSTIKSSVN--AKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTG 57
           M+  T L  HL+S   S+ N     + + TI L +L T  +   S     Q+ +  + TG
Sbjct: 1   MSTTTNLPYHLASKDFSTENKFTSQLSQKTI-LDLLNT--KSSTSLHHLKQVHAVALRTG 57

Query: 58  LIADTFAASRLIKFSTDLLP-FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
              D + +  L+K   +  P F  ++++ K+F ++ +PN F+FN +++  +Q N P +AI
Sbjct: 58  HFQDHYVSGTLVKCYAN--PHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAI 115

Query: 117 CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMY 176
           C Y  M+  +   + +TYP L +A     +  EG  +H HV+K G   DV++ +  I MY
Sbjct: 116 CCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMY 175

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236
              G++  AR++  E    D++ +N+++ GY+    VE AK ++  M ++N+ + N M+ 
Sbjct: 176 GSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVS 235

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
              + G + EA  LF EM +K+ +SWSA+I  Y +   Y+EAL +F  M    +   + V
Sbjct: 236 GMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFV 295

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + SVL+ACANL  +  G  +HA            L  AL+ MY+ CG +  A  +F+   
Sbjct: 296 LSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKME 355

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             ++ +WN+M                               I G   H +  + + LF +
Sbjct: 356 KKEVFTWNAM-------------------------------ICGLGMHGRAEDAIELFFK 384

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ    RP+  TL+ V+SAC H   +D+G  I                            
Sbjct: 385 MQKQKFRPNGITLLGVLSACAHSGMVDEGLRIF--------------------------- 417

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
             N++E  +G  E G+  +  ++      GL  ++ E+   M    + P+   +  +LGA
Sbjct: 418 --NSMEEVYGI-EPGMEHYGCVVDLLGRAGLLGEAEEVMYSMP---MEPSAAVWGALLGA 471

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG 577
           CR  G V+ G R    +++   LEP NS  Y  + ++  RAG
Sbjct: 472 CRKHGDVELGERVGKILLE---LEPQNSGRYALLSNIYARAG 510


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/590 (46%), Positives = 380/590 (64%), Gaps = 7/590 (1%)

Query: 215 EAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKE-MPKKDLVSWSALISCYEQ 271
           +A+ I + +P  + NIIA    I +    GN+  +  +F   +   ++ +++AL+  + Q
Sbjct: 44  QAQIIASPIPSIDPNIIAV-KFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQ 102

Query: 272 NEMYEEALVLFMN--MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           +  +   +  F N  ++ +    DE    SVL ACA L  V  G  VH    K G E  +
Sbjct: 103 HNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNL 162

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            ++N+L+ +Y   G    A+KLFD     D++SWN++ISGY   G V+KAR +FD M+EK
Sbjct: 163 FVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEK 222

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWI 448
           ++VSWSTMISGYA+++++++ + LF +MQH G + P++ TLVSV+SAC HL ALD GKWI
Sbjct: 223 NLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWI 282

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H +IR+N +++   LG  L DMY K GCV  A  VFH   E+ V SW+ +I+G AM G A
Sbjct: 283 HRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYA 342

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +++   F+EM + G+ PN+I+F+G+L AC H GLVD+G  +F+ M Q + + P  +HYGC
Sbjct: 343 NEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGC 402

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           +VDLL RAG L +AE LI SMPM P+V  WGALLG C+ + D E GERV  +++EL  +H
Sbjct: 403 VVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNH 462

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
            G  V L+N++AS GR DD    R  M     +K PGCS IE N  ++EF  GD +HPQ 
Sbjct: 463 SGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQS 522

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
             I +M+ E+  K+K+ GY P T  V  +ID+EEKE  L  HSEKLA+AFGLI  S    
Sbjct: 523 LRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTT 582

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IRI+KNLR+CNDCH A K IS+  +REIVVRDR RFHHFK G CSC D+W
Sbjct: 583 IRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 5/175 (2%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQASALRL 145
           +F  +   N   ++TM+  Y +      AI L++ M +   +  ++ T   +  A A   
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 274

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK IH  + +   +  +++ N L +MYA CG +  A+ +F E    D++SW+ I+ 
Sbjct: 275 ALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIM 334

Query: 206 GYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           G        EA   + +M E     N I+   ++      G V +    F  MP+
Sbjct: 335 GLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQ 389


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/529 (49%), Positives = 357/529 (67%), Gaps = 12/529 (2%)

Query: 278 ALVLFMNMIDHRV---MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           ++ +F++M+  RV   + +    V V  AC N   V  G  +   A+KIG+E  + + NA
Sbjct: 15  SMRIFLSMV--RVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNA 72

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +I MY++ G +  A ++FD   + DL SWN MI GY+  G + +A+ +FD M E+DVVSW
Sbjct: 73  MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 132

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           +T+I+GY Q   F E L LF EM   G  P+E TL S ++AC +LVALDQG+WIH YI K
Sbjct: 133 TTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDK 192

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG----VSSWNALIIGFAMNGLADK 510
           + +K+N  L  +L+DMY K G +D A +VFH  +E G    V  WNA+I G+AM+G + +
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFH--DEYGLKLKVWPWNAMIGGYAMHGKSKE 250

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++++F +MK   V+PN++TFV +L AC H  LV+EG  +F SM   + +EP  +HYGCMV
Sbjct: 251 AIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMV 310

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G+LKEAEE + +MPM+PD   WGALLGAC+ H D E G+R+G+ + EL  DH G
Sbjct: 311 DLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIG 370

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            HVLL+N++++ G+WD+   VR  +   G  K PGCS IE NG+ H+FL GDR+HPQ  +
Sbjct: 371 CHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQ 430

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPI 749
           +   LDEM  KLK  GY P+  EV  DID EE KET L +HSEKLAIAFGLI   P   I
Sbjct: 431 LYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAI 490

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           RI+KNLR+C DCH A KFIS+ + REI+VRDR R+HHFK G CSC D+W
Sbjct: 491 RIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 208/475 (43%), Gaps = 105/475 (22%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           + YT+  + +A    L V EG+ I  H +K G +S+++V N +I MYA  G +  AR++F
Sbjct: 31  NRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVF 90

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           D S   DL SWN ++ GYV +                               G +  A  
Sbjct: 91  DWSLDQDLYSWNIMIGGYVGS-------------------------------GEIGRAKE 119

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F EM ++D+VSW+ +I+ Y Q   ++EAL LF  M+      +E  + S L+ACANL  
Sbjct: 120 MFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVA 179

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF--DAGHNLDLISWNSMI 367
           +  G  +H    K  I+    L  +L+ MY+ CGEI  A K+F  + G  L +  WN+MI
Sbjct: 180 LDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMI 239

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
            G                               YA H +  E + LF +M+   + P++ 
Sbjct: 240 GG-------------------------------YAMHGKSKEAIDLFEQMKVEKVSPNKV 268

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T V++++AC+H   +++G+    Y +                          ++   +G 
Sbjct: 269 TFVALLNACSHGKLVEEGR---GYFK--------------------------SMASSYGI 299

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
           E + +  +  ++     +GL  ++ E    M    + P+   +  +LGACR    ++ G 
Sbjct: 300 EPE-IEHYGCMVDLLGRSGLLKEAEETVFNMP---MAPDATIWGALLGACRIHKDIERGQ 355

Query: 548 RHFNSMIQEHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESMPMSPDVATWG 599
           R    +I+    E +S H GC V   +L   +G   EA+ + + + +S    T G
Sbjct: 356 R-IGKIIK----ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPG 405



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 121/265 (45%), Gaps = 21/265 (7%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T++  Y+Q    ++A+ L+  ML      + +T      A A  +++ +G+ IH ++ 
Sbjct: 132 WTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYID 191

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLF-DESPV-LDLVSWNSILAGYVNADNVEEA 216
           K+    +  +  +L++MYA CG++  A K+F DE  + L +  WN+++ GY      +EA
Sbjct: 192 KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEA 251

Query: 217 KFIYNKMPERNIIASNSMIVLF---GRKGNVAEACR-LFKEMP-----KKDLVSWSALIS 267
             ++ +M    +  +    V        G + E  R  FK M      + ++  +  ++ 
Sbjct: 252 IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVD 311

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG--- 324
              ++ + +EA     NM    +  D  +  ++L AC     ++ G  +  +  ++    
Sbjct: 312 LLGRSGLLKEAEETVFNM---PMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDH 368

Query: 325 IECYINLQNALIHMYSSCGEITTAE 349
           I C++ L N    +YS+ G+   A+
Sbjct: 369 IGCHVLLAN----LYSASGQWDEAK 389


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/693 (39%), Positives = 422/693 (60%), Gaps = 51/693 (7%)

Query: 146 SVFEGKLIHDHVLKAGFDSD-VYVNNTLINMYAVC----GDLSAARKLFDESPVLDLVSW 200
           +++E   IH   +K G  S+ +++   +I     C    GD+  ARK+FDE P   +  W
Sbjct: 47  TMYEINQIHSQTIKTGLSSNHLFLTKVII---FCCTKESGDVYYARKVFDEIPQPSVFIW 103

Query: 201 NSILAGYVNADNVEEAKFIYNKM------------P------------------------ 224
           N+++ GY   +  E    +Y  M            P                        
Sbjct: 104 NTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVI 163

Query: 225 ----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
               + N+      I LF   G V  A ++F      ++V+W+ ++S Y + + YEE+  
Sbjct: 164 HGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKR 223

Query: 281 LFMNMID--HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI-ECYINLQNALIH 337
           LF+ M      V  + V +V +LSAC+ L  +  G  ++   +K GI E  + L+NALI 
Sbjct: 224 LFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALID 283

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           M++SCGE+  A  +FD     D+ISW S+++G+     ++ AR  FD M E+D VSW+ M
Sbjct: 284 MFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAM 343

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I GY + ++F E L+LF +MQ   ++PDE T+VS+++AC HL AL+ G+W   YI KN +
Sbjct: 344 IDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKI 403

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           K ++ +G  LIDMY K G V+ A ++F+  ++K   +W A+I+G A NG  +++L MFS 
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M ++ VTP+EIT++GV+ AC H+GLV +G   F++M  +H ++PN  HYGCMVDLLGRAG
Sbjct: 464 MLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAG 523

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            LKEA E+I +MP+ P+   WG+LLGAC+ H + ++ E    +++EL+P++   +VLL N
Sbjct: 524 HLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCN 583

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+A+  +W ++  VR MM+ RG+ KIPGCS++E NGI++EF+AGD++HPQ  EI   L+ 
Sbjct: 584 IYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLEN 643

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           M + L   GY+PDT EV  D+ +E+KET L+ HSEKLAIA+ LI+      IRI+KNLR+
Sbjct: 644 MKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRM 703

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           C DCH  A  +S+ ++RE++VRD+ RFHHF+HG
Sbjct: 704 CVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 198/462 (42%), Gaps = 100/462 (21%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLLA 138
           ++Y+ KIF   +      +N ++  Y +    +++  L+  M      V  ++ T  L+ 
Sbjct: 187 VNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLML 246

Query: 139 QASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            A +    +  GK I++  +K G  + ++ + N LI+M+A CG++ AAR +FDE    D+
Sbjct: 247 SACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDV 306

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           +SW SI+ G+ N   ++ A+  +++MPER+ ++  +M                       
Sbjct: 307 ISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAM----------------------- 343

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
                   I  Y +   ++E L LF +M    V  DE  +VS+L+ACA+L  ++ G    
Sbjct: 344 --------IDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAK 395

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
               K  I+    + NALI MY  CG +  A+K+F+     D  +W +MI G    G  E
Sbjct: 396 TYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGE 455

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +A  +F  M+E  V                                PDE T + V+ ACT
Sbjct: 456 EALTMFSYMLEASVT-------------------------------PDEITYIGVMCACT 484

Query: 438 HLVALDQGKWIHAYIR-KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           H+  + +GK   + +  ++G+K N      ++D+  + G +  ALEV             
Sbjct: 485 HVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVI------------ 532

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
                  MN                 V PN I +  +LGACR
Sbjct: 533 -------MN---------------MPVKPNSIVWGSLLGACR 552



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 134/305 (43%), Gaps = 15/305 (4%)

Query: 12  STIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF 71
           S +K  V  K I+   I   I+E +L    +         +M     + D      +I +
Sbjct: 250 SKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISW 309

Query: 72  STDLLPF---IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
           ++ +  F     +  + K F  +   +   +  M+  Y++ N  ++ + L++ M  +NV 
Sbjct: 310 TSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVK 369

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            D +T   +  A A   ++  G+    ++ K    +D ++ N LI+MY  CG++  A+K+
Sbjct: 370 PDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKI 429

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNV 244
           F+E    D  +W +++ G  N  + EEA  +++ M E ++    I    ++      G V
Sbjct: 430 FNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLV 489

Query: 245 AEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           A+    F  M      K +L  +  ++    +    +EAL + MNM    V  + +V  S
Sbjct: 490 AKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNM---PVKPNSIVWGS 546

Query: 300 VLSAC 304
           +L AC
Sbjct: 547 LLGAC 551


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/710 (38%), Positives = 411/710 (57%), Gaps = 74/710 (10%)

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           N+  P + +A         GK IH  VLK G D DV+V N L+ MY  C  +  AR +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 191 ESPVLDLVSWNSILAGYVNADN-------VEEAKFIYNKMPE------------------ 225
           +    D+VSW++++               + E  F+  +  E                  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 226 ---------RN-------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS-C 268
                    RN       +  + +++ ++ + G++  A +LF  + +K +VSW+A+I+ C
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
              N + EE   LF+ M +  +  +E+ ++S++  C     ++ G  +HA  ++ G    
Sbjct: 274 IRSNRL-EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVS 332

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + L  AL+ MY  C +I  A  LFD+  N D++ W +M+S Y +   +++A  LFD    
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFD---- 388

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
                                      +M+  G+RP + T+VS++S C    ALD GKW+
Sbjct: 389 ---------------------------QMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H+YI K  ++++ IL T L+DMY K G ++ A  +F     + +  WNA+I GFAM+G  
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 481

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +++L++F+EM++ GV PN+ITF+G+L AC H GLV EG + F  M+    L P  +HYGC
Sbjct: 482 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 541

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           MVDLLGRAG+L EA E+I+SMP+ P+   WGAL+ AC+ H + ++GE    +L+E++P++
Sbjct: 542 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 601

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
            G++VL+SNI+A+  RW D   VR  M   G+ K PG S+IE NG +HEFL GD++HPQI
Sbjct: 602 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQI 661

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
             I+ ML EM +KL   GY PDT  V  +ID+EEKET L  HSEKLA+AFGLI+ +P  P
Sbjct: 662 RRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTP 721

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IRI+KNLR+CNDCH A K +S+ + R I+VRDR+RFHHF+ G CSC D+W
Sbjct: 722 IRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/430 (19%), Positives = 181/430 (42%), Gaps = 64/430 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  L       +  M+   I+ N  ++   L+  M   N+  +  T   L        
Sbjct: 253 QLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTG 312

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK +H ++L+ GF   + +   L++MY  C D+  AR LFD +   D++ W ++L+
Sbjct: 313 ALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLS 372

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
            Y  A+ +++A  ++++M                                        E 
Sbjct: 373 AYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEV 432

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           + I + +++ ++ + G++  A RLF E   +D+  W+A+I+ +  +   EEAL +F  M 
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-----VHALAVKIGIECYINLQNALIHMYSS 341
              V  +++  + +L AC++  +V  G       VH   +   IE Y      ++ +   
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY----GCMVDLLGR 548

Query: 342 CGEITTAEKLFDAGH-NLDLISWNSMISGYL-----KCGSVEKARALFDAMIEKDVVSWS 395
            G +  A ++  +     + I W ++++        + G +   + L    IE +   ++
Sbjct: 549 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL---EIEPENCGYN 605

Query: 396 TMISG-YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
            ++S  YA  +++S+   +   M+  G++ +    V  ++   H   +  G   H  IR 
Sbjct: 606 VLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLM--GDQSHPQIR- 662

Query: 455 NGLKINSILG 464
              +IN +L 
Sbjct: 663 ---RINEMLA 669


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 294/766 (38%), Positives = 455/766 (59%), Gaps = 20/766 (2%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           +  +F    Q+ +Q+I   L    +  + LI   T L       Y+  +F    +PN F+
Sbjct: 10  RVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRA--PPHYTHLLFNSTLNPNVFV 67

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           F +M+R Y       + + +++ M    V  D + YP+L +++        G   H HVL
Sbjct: 68  FTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIGFHAHVL 122

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEA 216
           K G  SD +V N +I+MYA  G +  ARK+FDE P  +  +  WN++++GY   ++  +A
Sbjct: 123 KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           +++++ MPERN+I   +M+  + +  ++  A R F  MP++ +VSW+A++S Y QN + E
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANL-TVVKAGTSVHALAVK-IGIECYINLQNA 334
           E L LF  M++  +  DE   V+V+SAC++      A + V  L  K I + C++  + A
Sbjct: 243 EVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFV--RTA 300

Query: 335 LIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           L+ MY+ CG I  A ++FD  G   + ++WN+MIS Y + G+++ AR LF+ M  ++VV+
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360

Query: 394 WSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           W++MI+GYAQ+ Q +  + LF EM     + PDE T+VSVISAC HL AL+ G W+  ++
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 420

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +N +K++      +I MY + G +++A  VF     + V S+N LI GFA +G   +++
Sbjct: 421 TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAI 480

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            + S MK+ G+ P+ +TF+GVL AC H GL++EG + F S+      +P   HY CMVDL
Sbjct: 481 NLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-----KDPAIDHYACMVDL 535

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGR G L++A+  +E MPM P    +G+LL A + H   E+GE    KL EL+PD+ G  
Sbjct: 536 LGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 595

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           +LLSNI+AS GRW DV  +R  M + GV K  G S +E  G +H+F+  DR+H + ++I 
Sbjct: 596 ILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIY 655

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            +L E+ KK++  GY  D   V  D+++EEKE  +  HSEKLAI + L+       IR++
Sbjct: 656 QLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVV 715

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCHTA K IS+   R I+VRD +RFH F  G CSC D+W
Sbjct: 716 KNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/559 (45%), Positives = 370/559 (66%)

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++  A  +F ++P  D   ++ +   Y + ++    + ++  M+   V  ++     
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           ++ AC     ++ G  +HA  +K G        N LIHMY +   +  A ++FD     D
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           ++SW S+I+GY + G V+KAR +F+ M E++ VSW+ MI+ Y Q ++  E  +LF  M+ 
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             +  D+    S++SACT L AL+QGKWIH YI K+G++++S L TT+IDMY K GC++ 
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A EVF+   +KG+SSWN +I G AM+G  + ++E+F EM++  V P+ ITFV VL AC H
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV+EG  +F  M +   L+P  +H+GCMVDLLGRAG+L+EA +LI  MP++PD    G
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 425

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           AL+GAC+ HG+ E+GE++G+K++EL+P + G +VLL+N++AS GRW+DV +VR +M  RG
Sbjct: 426 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 485

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           V K PG SMIE+   + EF+AG R HPQ  EI   LDE+ + ++  GY PDT  V  DID
Sbjct: 486 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDID 545

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEKE  L+ HSEKLAIAFGL+   P   +RI KNLRIC DCH A+K IS+ +DREI++R
Sbjct: 546 EEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIR 605

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR+RFHHF+ G CSC D+W
Sbjct: 606 DRNRFHHFRMGGCSCKDYW 624


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/698 (39%), Positives = 423/698 (60%), Gaps = 44/698 (6%)

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNS 202
           +S+ + K  H H+++ G  SD Y  + L  M A+     L  ARK+FDE P  +  +WN+
Sbjct: 41  VSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNT 100

Query: 203 ILAGYVNA-----------DNVEEAKFIYNKMP--------------------------- 224
           ++  Y +            D V E++   NK                             
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKS 160

Query: 225 --ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
               ++  +NS+I  +   G++  AC++F  + +KD+VSW+++I+ + Q    ++AL LF
Sbjct: 161 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELF 220

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M    V    V +V VLSACA +  ++ G  V +   +  +   + L NA++ MY+ C
Sbjct: 221 KKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC 280

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G I  A++LFDA    D ++W +M+ GY      E AR + ++M +KD+V+W+ +IS Y 
Sbjct: 281 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYE 340

Query: 403 QHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           Q+ + +E L +F E+Q    ++ ++ TLVS +SAC  + AL+ G+WIH+YI+K+G+++N 
Sbjct: 341 QNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            + + LI MY K G ++ + EVF+  E++ V  W+A+I G AM+G  +++++MF +M+++
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            V PN +TF  V  AC H GLVDE    F+ M   + + P  KHY C+VD+LGR+G L++
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEK 520

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A + IE+MP+ P  + WGALLGACK H +  + E    +L+EL+P +DG HVLLSNI+A 
Sbjct: 521 AVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 580

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
            G+W++V E+R  M   G+ K PGCS IE +G+IHEFL+GD  HP   ++   L E+ +K
Sbjct: 581 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 640

Query: 702 LKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           LK  GY P+  +V   I++EE KE +L  HSEKLAI +GLI+   P  IR++KNLR+C D
Sbjct: 641 LKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGD 700

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CH+ AK IS+ +DREI+VRDR+RFHHF++G CSC DFW
Sbjct: 701 CHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 141/537 (26%), Positives = 250/537 (46%), Gaps = 106/537 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           +++C S +Q  Q    MI TG  +D ++AS+L   +  L  F  + Y+ K+F  +  PN 
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA-LSSFASLEYARKVFDEIPKPNS 95

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHD 155
           F +NT++RAY     P  +I  +  M++ +    N YT+P L +A+A   S+  G+ +H 
Sbjct: 96  FAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 155

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             +K+   SDV+V N+LI+ Y  CGDL +A K+F      D+VSWNS++ G+V   + ++
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215

Query: 216 AKFIYNKMPERNIIAS---------------------------------------NSMIV 236
           A  ++ KM   ++ AS                                       N+M+ 
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLD 275

Query: 237 LFGRKGNVAEACRLF-------------------------------KEMPKKDLVSWSAL 265
           ++ + G++ +A RLF                                 MP+KD+V+W+AL
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335

Query: 266 ISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           IS YEQN    EAL++F  + +   + ++++ +VS LSACA +  ++ G  +H+   K G
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           I    ++ +ALIHMYS CG++  + ++F++    D+  W++M                  
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM------------------ 437

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                        I G A H   +E + +F +MQ   ++P+  T  +V  AC+H   +D+
Sbjct: 438 -------------IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484

Query: 445 GKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            + +   +  N G+         ++D+  + G ++ A++           S W AL+
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 289/804 (35%), Positives = 434/804 (53%), Gaps = 76/804 (9%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   K      Q+   ++  G+  + +  + L+K         E   + ++F    +
Sbjct: 51  LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNE---ARRLFDKFSN 107

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N M+  Y  R + Q+A  L+ LM    +  D +T+  +  A +   ++  G+ +
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREV 167

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  V++AG  ++  V N LI+MYA CG +  AR++FD     D VSW ++   Y  +   
Sbjct: 168 HVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYA 227

Query: 214 EEAKFIYNKM------PER---------------------------------NIIASNSM 234
           +E+   Y+ M      P R                                 ++  S ++
Sbjct: 228 QESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTAL 287

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
             ++ + G V +A  +F+ +P +D+++W+ +I     +   EEA  +F  M+   V  D 
Sbjct: 288 TKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDR 347

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V  +++LSACA    +  G  +HA AVK G+   +   NALI+MYS              
Sbjct: 348 VTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYS-------------- 393

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            K GS++ AR +FD M ++DVVSW+ ++ GYA   Q  E+ S F
Sbjct: 394 -----------------KAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTF 436

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M   G+  ++ T + V+ AC++ VAL  GK IHA + K G+  +  +   L+ MY K 
Sbjct: 437 KKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKC 496

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G V++A+ V  G   + V +WN LI G A NG   ++L+ F  MK   + PN  TFV V+
Sbjct: 497 GSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVM 556

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            ACR   LV+EG R F SM +++ + P  KHY CMVD+L RAG L EAE++I +MP  P 
Sbjct: 557 SACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPS 616

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            A WGALL AC+ HG+ E+GE+   + ++L+P + G +V LS I+A+ G W DV ++R +
Sbjct: 617 AAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKL 676

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RGV K PG S IE  G +H F+AGD++HP+  EI + L+ + K++K  GY PDT  V
Sbjct: 677 MKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFV 736

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+DQE KE  +  HSEKLAIA+GLI+  P  PIR+ KNLR+C DCHTA KFIS+   R
Sbjct: 737 MHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGR 796

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+ RD HRFHHFK+G CSC D+W
Sbjct: 797 EIIARDAHRFHHFKNGECSCGDYW 820



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 250/520 (48%), Gaps = 72/520 (13%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           VD+Y Y  L Q+      +  GK +H+H+L+ G   +VY+ NTL+ +Y  CG ++ AR+L
Sbjct: 42  VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRL 101

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER---------------- 226
           FD+     +VSWN +++GY +    +EA  ++  M      P++                
Sbjct: 102 FDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAAL 161

Query: 227 -----------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                            N    N++I ++ + G+V +A R+F  M  +D VSW+ L   Y
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            ++   +E+L  +  M+   V    +  ++VLSAC +L  ++ G  +HA           
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA----------- 270

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
                               ++ ++ H+ D+    ++   Y+KCG+V+ AR +F+ +  +
Sbjct: 271 --------------------QIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR 310

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           DV++W+TMI G     Q  E   +F  M    + PD  T ++++SAC     L  GK IH
Sbjct: 311 DVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIH 370

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           A   K+GL  +   G  LI+MY K G + +A +VF    ++ V SW AL+ G+A  G   
Sbjct: 371 ARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVV 430

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           +S   F +M + GV  N+IT++ VL AC +   +  G +  ++ + +  +  +      +
Sbjct: 431 ESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWG-KEIHAEVVKAGIFADLAVANAL 489

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + +  + G +++A  + E M  + DV TW  L+G   ++G
Sbjct: 490 MSMYFKCGSVEDAIRVSEGMS-TRDVVTWNTLIGGLAQNG 528


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/704 (39%), Positives = 413/704 (58%), Gaps = 51/704 (7%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS--VFEGKLIH 154
           F +N M+  Y++     +A  L+ LM   +V   N      AQ   +  +  VF  K+ H
Sbjct: 109 FSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFN-KMPH 167

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            + +           N L+  Y   G L  AR+LF+     +L+SWN ++ GYV  + + 
Sbjct: 168 RNSISW---------NGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLG 218

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ ++++MP R++I+ N+MI  + + G++++A RLF E P +D+ +W+A++S Y QN M
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            +EA   F          DE+ V + +S                              NA
Sbjct: 279 VDEARKYF----------DEMPVKNEIS-----------------------------YNA 299

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           ++  Y    ++  A +LF+A    ++ SWN+MI+GY + G + +AR LFD M ++D VSW
Sbjct: 300 MLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSW 359

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           + +ISGYAQ+  + E L++F+EM+  G   + +T    +S C  + AL+ GK +H  + K
Sbjct: 360 AAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK 419

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G +    +G  L+ MY K G  D A +VF G EEK V SWN +I G+A +G   ++L +
Sbjct: 420 AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVL 479

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  MKK+GV P+EIT VGVL AC H GL+D G  +F SM +++ ++P SKHY CM+DLLG
Sbjct: 480 FESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLG 539

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG L+EAE L+ +MP  P  A+WGALLGA + HG+ E+GE+    + +++P + G +VL
Sbjct: 540 RAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVL 599

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSN++A+ GRW DV ++R  M   GV K+ G S +E    IH F  GD  HP+ + I   
Sbjct: 600 LSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAF 659

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+E+  K++ EGY   T  V  D+++EEKE  L  HSEKLA+AFG++TI    PIR+MKN
Sbjct: 660 LEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKN 719

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCH A K IS+   R I++RD HRFHHF  G CSC D+W
Sbjct: 720 LRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 220/479 (45%), Gaps = 82/479 (17%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D D+   N  I+ +   G   +A ++F+  P    VS+N++++GY+       A+ +++K
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MPER++ + N M+  + R   + EA +LF  MPKKD+VSW+A++S Y QN   +EA  +F
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF 162

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            N + HR  +                                        N L+  Y   
Sbjct: 163 -NKMPHRNSIS--------------------------------------WNGLLAAYVHN 183

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +  A +LF++  N +LISWN ++ GY+K   +  AR LFD M  +DV+SW+TMISGYA
Sbjct: 184 GRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYA 243

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINS 461
           Q    S+   LF E     IR D  T  +++S       +D+  K+      KN +  N+
Sbjct: 244 QVGDLSQAKRLFNESP---IR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNA 299

Query: 462 ILG--------------------------TTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           +L                            T+I  Y + G +  A ++F    ++   SW
Sbjct: 300 MLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSW 359

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
            A+I G+A NG  +++L MF EMK+ G + N  TF   L  C  +  ++ G +    +++
Sbjct: 360 AAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK 419

Query: 556 EHRLEPNSKHYGCMVD--LLG---RAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
                      GC V   LLG   + G   EA ++ E +    DV +W  ++    +HG
Sbjct: 420 A------GFETGCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHG 471



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 116/281 (41%), Gaps = 47/281 (16%)

Query: 52  QMILTGLIADTFAASRLIKFSTDLLPFIE---MSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           +M++ G + +      +  ++T +  + +   ++ + K+F  +   +   +  ++  Y Q
Sbjct: 309 KMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQ 368

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
               ++A+ ++  M  +    +  T+       A   ++  GK +H  V+KAGF++  +V
Sbjct: 369 NGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFV 428

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY--------------------V 208
            N L+ MY  CG    A  +F+     D+VSWN+++AGY                    V
Sbjct: 429 GNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGV 488

Query: 209 NADNV----------------EEAKFIYNKMPERNIIASNS----MIVLFGRKGNVAEAC 248
             D +                   ++ Y+   + N+  ++     MI L GR G + EA 
Sbjct: 489 KPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAE 548

Query: 249 RLFKEMP-KKDLVSWSALISC---YEQNEMYEEALVLFMNM 285
            L + MP      SW AL+     +   E+ E+A  +   M
Sbjct: 549 NLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKM 589


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/506 (51%), Positives = 340/506 (67%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      ++   A L     G+SVH  AVK G E   ++Q+ LI+MY+  G +    ++F
Sbjct: 110 DNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVF 169

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
            +    DL+   +M+S   K G V  AR LFD M  KD ++W+ MISGY Q  Q  E LS
Sbjct: 170 SSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALS 229

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF  MQ  G++ +E ++VSV+SAC+HL ALDQG+W HAYI +N L++   LGT LIDMY 
Sbjct: 230 LFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYA 289

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G ++ A+EVF G +EK V +W++ I G AMNG  +K LE+FS MK+  V PNEITFV 
Sbjct: 290 KCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVS 349

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL  C  +GLV+EG +HF SM + + +EP  +HYGCMVDL GRAG L EA   I SMP+ 
Sbjct: 350 VLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR 409

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P V  WGALL ACK + + EMGE   RK+VEL+  + G +VLLSNI+A    WD V  VR
Sbjct: 410 PHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVR 469

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
             M  +GV K PGCS+IE  G +HEF  GD++HP+  EI  ML E++++LKL GY  +T 
Sbjct: 470 QTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTN 529

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            V FDI++EEKE  L  HSEK+AIAFGLI++SP  PIRI+KNLR+C DCH A K IS+AF
Sbjct: 530 PVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAF 589

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           +REIVVRDR+RFHHF+ G CSC  +W
Sbjct: 590 NREIVVRDRNRFHHFRDGECSCKGYW 615



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 217/478 (45%), Gaps = 73/478 (15%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PTI++      ++ C + ++  QI +Q+++ GL+ D     + +  S  L     + YS 
Sbjct: 11  PTISM------VEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVA-SIALNNPNNLHYSN 63

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLLAQASAL 143
           ++    ++P  F FN+M+RA+ + + P ++   Y  +L++   +  DNYT+  L + SA 
Sbjct: 64  QVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQ 123

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            L+   G  +H   +K GF+ D +V + LI MYA  G L A  ++F      DLV   ++
Sbjct: 124 LLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAM 183

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           ++      +V  A+ +++KM  ++ IA N+M                             
Sbjct: 184 VSACAKMGDVGFARKLFDKMSHKDPIAWNAM----------------------------- 214

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
             IS Y Q     EAL LF  M    V V+EV +VSVLSAC++L  +  G   HA   + 
Sbjct: 215 --ISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERN 272

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
            +   + L  ALI MY+ CG +  A ++F      ++ +W+S I G    G+ EK     
Sbjct: 273 KLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKC---- 328

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                                      L LF  M+   ++P+E T VSV+  C+ +  ++
Sbjct: 329 ---------------------------LELFSLMKQDSVQPNEITFVSVLRGCSVVGLVE 361

Query: 444 QG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALI 499
           +G K   +  +  G++        ++D+Y + G +D AL   +    +  V +W AL+
Sbjct: 362 EGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALL 419



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 42/276 (15%)

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHL 439
           + D      + ++++MI  +++      +   +  + H    + PD  T   ++     L
Sbjct: 65  VLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQL 124

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---------- 489
           +A   G  +H    K G + +  + + LI MY +LG +D    VF    E          
Sbjct: 125 LAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMV 184

Query: 490 ---------------------KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
                                K   +WNA+I G+   G + ++L +F+ M++ GV  NE+
Sbjct: 185 SACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEV 244

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           + V VL AC H+G +D+G R  ++ I+ ++L         ++D+  + G + +A E+   
Sbjct: 245 SMVSVLSACSHLGALDQG-RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWG 303

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           M    +V TW + +G    +G        G K +EL
Sbjct: 304 MK-EKNVYTWSSAIGGLAMNG-------AGEKCLEL 331



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 44/243 (18%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++ ++ K+F  +   +   +N M+  Y+Q    ++A+ L+ LM    V V+  +   +  
Sbjct: 192 DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLS 251

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++ +G+  H ++ +      + +   LI+MYA CG+++ A ++F      ++ +
Sbjct: 252 ACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYT 311

Query: 200 WNSILAGY---------------VNADNV--------------------EEAKFIYNKMP 224
           W+S + G                +  D+V                    EE +  +  M 
Sbjct: 312 WSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMS 371

Query: 225 -----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV-SWSALISC---YEQNEMY 275
                E  +     M+ L+GR G++ EA      MP +  V +W AL++    Y   EM 
Sbjct: 372 KVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMG 431

Query: 276 EEA 278
           E A
Sbjct: 432 ELA 434


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 282/763 (36%), Positives = 442/763 (57%), Gaps = 37/763 (4%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL-PFIEMSYSFKIFAFLESP-NGFIF 99
           S +Q T++ + +  +G +    +A+ L+   T  + P   +   + +  F   P + F+F
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLF 70

Query: 100 NTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS-VFEGKLIHDHV 157
           +T +RA  + +  P + I LY+ M   +V  D +T+  L +  A   + V  G+++H   
Sbjct: 71  DTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAAC 130

Query: 158 LKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +    S V  + + +I+MYA  G    AR+ FDE+ V D+V+W ++++G          
Sbjct: 131 FRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISG---------- 180

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                                  + G + +A RL    P +++V+W+ LIS Y +     
Sbjct: 181 ---------------------LAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAA 219

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA+  F +M+   +  DEV V+ +LSAC  L  +  G S+H L     +     L  ALI
Sbjct: 220 EAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALI 279

Query: 337 HMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
            MY+ CG+   A ++FDA G       WN+MI GY K G V+ AR+LFD M + DV++++
Sbjct: 280 DMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFN 339

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           ++I+GY    +  E L LF +M+ HG+  D  T+V +++A   L AL QG+ +HA I + 
Sbjct: 340 SLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQR 399

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
            ++ +  LGT L+DMYMK G V+ A+  F     + V +W+A+I G A NG+   +LE F
Sbjct: 400 LVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHF 459

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK  G   N +T++ VL AC H  L+DEG  +F+ M   H + P  +HYGCM+DLLGR
Sbjct: 460 FWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGR 519

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           +G+L EA +L+++MPM P+   W ++L AC+ H + ++ +     L++L+P  D  +V +
Sbjct: 520 SGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQM 579

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            NI+    +W+D  ++R +M +RGV K  G S I   G +H+F+ GDR+HPQI EI  M+
Sbjct: 580 YNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMM 639

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +E+ ++LK  GY+P T ++  D+D+EEKE  L  HSEKLAIAFGL++++P  P+ I+KNL
Sbjct: 640 EEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNL 699

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCH+A K ISR ++REI+VRDR RFHHF+ G CSC DFW
Sbjct: 700 RVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/790 (34%), Positives = 442/790 (55%), Gaps = 74/790 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ + ++  G   D F  + LI      +   ++  + K+F  L + +   + +M+    
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMH---IKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +    +QA  L++ M    V  D   +  L +A     ++ +GK +H  + + G+D+++Y
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V   +++MY  CG +  A ++FD     ++VSW +++AG+     ++EA   +NKM E  
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 228 IIAS---------------------------------------NSMIVLFGRKGNVAEAC 248
           I  +                                        +++ ++ + G++ +A 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+F+++ K+++V+W+A+I+ Y Q+E Y+ AL  F  ++   +  +     S+L+ C +  
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            ++ G  VH L +K G+E  +++ NAL+ M+                             
Sbjct: 529 SLELGKWVHFLIMKAGLESDLHVSNALVSMF----------------------------- 559

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
             + CG +  A+ LF+ M ++D+VSW+T+I+G+ QH +       F  MQ  GI+PD+ T
Sbjct: 560 --VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
              +++AC    AL +G+ +HA I +     + ++GT LI MY K G +++A +VFH   
Sbjct: 618 FTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP 677

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +K V SW ++I G+A +G   ++LE+F +M++ GV P+ ITFVG L AC H GL++EG  
Sbjct: 678 KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           HF SM +E  +EP  +HYGCMVDL GRAG+L EA E I  M + PD   WGALLGAC+ H
Sbjct: 738 HFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            + E+ E+  +K +EL P+ +G  V+LSNI+A+ G W +V ++R +M+ RGVVK PG S 
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE +G +H F + D+THPQ  EI   L+ +  +++  GY PDT  V  D++  EKE  LF
Sbjct: 857 IEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALF 916

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSE+LAI +GL+   P  PI I KNLR+C DCHTA KFIS+   R+I+ RD +RFHHFK
Sbjct: 917 YHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFK 976

Query: 789 HGSCSCMDFW 798
            G CSC DFW
Sbjct: 977 DGVCSCGDFW 986



 Score =  255 bits (651), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 154/615 (25%), Positives = 306/615 (49%), Gaps = 78/615 (12%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C  FK      +I + +  +G+  D F  + LI         I      +IF  +  
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAK---QIFDDMRE 173

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            + + +N ++  Y+Q  + ++A  L++ M+ ++V  D  T+  +  A A   +V +G+ +
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGREL 233

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY------ 207
           ++ +LKAG+D+D++V   LINM+  CGD+  A K+FD  P  DLV+W S++ G       
Sbjct: 234 YNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRF 293

Query: 208 --------------VNADNV---------------EEAKFIYNKMPE----RNIIASNSM 234
                         V  D V               E+ K ++ +M E      I    ++
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAI 353

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++ + G++ +A  +F  +  +++VSW+A+I+ + Q+   +EA + F  MI+  +  + 
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V  +S+L AC++ + +K G  +                                + + +A
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQ-------------------------------DHIIEA 442

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G+  D     +++S Y KCGS++ A  +F+ + +++VV+W+ MI+ Y QH+Q+   L+ F
Sbjct: 443 GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF 502

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             +   GI+P+ +T  S+++ C    +L+ GKW+H  I K GL+ +  +   L+ M++  
Sbjct: 503 QALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A  +F+   ++ + SWN +I GF  +G    + + F  M++SG+ P++ITF G+L
Sbjct: 563 GDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLL 622

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC     + EG R  +++I E   + +      ++ +  + G +++A ++   +P   +
Sbjct: 623 NACASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKN 680

Query: 595 VATWGALLGACKKHG 609
           V +W +++    +HG
Sbjct: 681 VYSWTSMIAGYAQHG 695



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/555 (25%), Positives = 271/555 (48%), Gaps = 76/555 (13%)

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           ++++ +   TY  L Q      ++ +G+ I++H+ K+G   D+++ NTLINMYA CG+  
Sbjct: 103 SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTI 162

Query: 184 AARKLFDESPVLDLVSWNSILAGYV----------------------------------- 208
           +A+++FD+    D+ SWN +L GYV                                   
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 209 NADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +A NV++ + +YN +     + ++    ++I +  + G++ +A ++F  +P +DLV+W++
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+   ++  +++A  LF  M +  V  D+V  VS+L AC +   ++ G  VHA   ++G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  I +  A++ MY+ CG +  A ++FD     +++SW +MI+G+ + G +++A   F+
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            MIE                                GI P+  T +S++ AC+   AL +
Sbjct: 403 KMIES-------------------------------GIEPNRVTFMSILGACSSPSALKR 431

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G+ I  +I + G   +  + T L+ MY K G + +A  VF    ++ V +WNA+I  +  
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNS 563
           +   D +L  F  + K G+ PN  TF  +L  C+    ++ G   HF  +I +  LE + 
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--LIMKAGLESDL 549

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
                +V +    G L  A+ L   MP   D+ +W  ++    +HG +++     + + E
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 624 --LQPDHDGFHVLLS 636
             ++PD   F  LL+
Sbjct: 609 SGIKPDKITFTGLLN 623



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 260/499 (52%), Gaps = 55/499 (11%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLV--SWNSILAGYVNADNVEEAKFIY 220
           D    N ++N  +  G  + A ++ +  +S  + +   +++++L   +   N+ + + IY
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 221 NKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           N +     + +I   N++I ++ + GN   A ++F +M +KD+ SW+ L+  Y Q+ +YE
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA  L   M+   V  D+   VS+L+ACA+   V  G  ++ L +K              
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-------------- 239

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                            AG + DL    ++I+ ++KCG +  A  +FD +  +D+V+W++
Sbjct: 240 -----------------AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI+G A+H +F +  +LF  M+  G++PD+   VS++ AC H  AL+QGK +HA +++ G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                 +GT ++ MY K G +++ALEVF   + + V SW A+I GFA +G  D++   F+
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDL 572
           +M +SG+ PN +TF+ +LGAC     +  G +     IQ+H +E     + +    ++ +
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQ-----IQDHIIEAGYGSDDRVRTALLSM 457

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
             + G LK+A  + E +    +V  W A++ A  +H  ++      + L++  ++P+   
Sbjct: 458 YAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 631 FHVLLSNIHASK----GRW 645
           F  +L+   +S     G+W
Sbjct: 517 FTSILNVCKSSDSLELGKW 535



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 187/390 (47%), Gaps = 37/390 (9%)

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           C +F ++  KD    +A+++   +   + EA+ +   +    + +      ++L  C   
Sbjct: 66  CVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G  ++    K G++  I ++N LI+MY+ CG   +A+++FD     D+ SWN ++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
            GY+                               QH  + E   L  +M    ++PD+ 
Sbjct: 184 GGYV-------------------------------QHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T VS+++AC     +D+G+ ++  I K G   +  +GT LI+M++K G + +A +VF   
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + + +W ++I G A +G   ++  +F  M++ GV P+++ FV +L AC H   +++G 
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG- 331

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           +  ++ ++E   +        ++ +  + G +++A E+ + +    +V +W A++    +
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD-LVKGRNVVSWTAMIAGFAQ 390

Query: 608 HGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
           HG  +       K++E  ++P+   F  +L
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSIL 420



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 138/264 (52%), Gaps = 5/264 (1%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G   K R +  A I KD    + +++  ++  QF+E + +   +    I+    T  +++
Sbjct: 59  GRCPKGRCVVFADI-KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALL 117

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
             C     L  G+ I+ +I+K+G++ +  +  TLI+MY K G   +A ++F    EK V 
Sbjct: 118 QLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVY 177

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWN L+ G+  +GL +++ ++  +M +  V P++ TFV +L AC     VD+G   +N +
Sbjct: 178 SWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN-L 236

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           I +   + +      ++++  + G + +A ++ +++P + D+ TW +++    +HG  + 
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSMITGLARHGRFKQ 295

Query: 614 GERVGRKLVE--LQPDHDGFHVLL 635
              + +++ E  +QPD   F  LL
Sbjct: 296 ACNLFQRMEEEGVQPDKVAFVSLL 319


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/790 (34%), Positives = 442/790 (55%), Gaps = 74/790 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ + ++  G   D F  + LI      +   ++  + K+F  L + +   + +M+    
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMH---IKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +    +QA  L++ M    V  D   +  L +A     ++ +GK +H  + + G+D+++Y
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V   +++MY  CG +  A ++FD     ++VSW +++AG+     ++EA   +NKM E  
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 228 IIAS---------------------------------------NSMIVLFGRKGNVAEAC 248
           I  +                                        +++ ++ + G++ +A 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+F+++ K+++V+W+A+I+ Y Q+E Y+ AL  F  ++   +  +     S+L+ C +  
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            ++ G  VH L +K G+E  +++ NAL+ M+                             
Sbjct: 529 SLELGKWVHFLIMKAGLESDLHVSNALVSMF----------------------------- 559

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
             + CG +  A+ LF+ M ++D+VSW+T+I+G+ QH +       F  MQ  GI+PD+ T
Sbjct: 560 --VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
              +++AC    AL +G+ +HA I +     + ++GT LI MY K G +++A +VFH   
Sbjct: 618 FTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP 677

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +K V SW ++I G+A +G   ++LE+F +M++ GV P+ ITFVG L AC H GL++EG  
Sbjct: 678 KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           HF SM +E  +EP  +HYGCMVDL GRAG+L EA E I  M + PD   WGALLGAC+ H
Sbjct: 738 HFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            + E+ E+  +K +EL P+ +G  V+LSNI+A+ G W +V ++R +M+ RGVVK PG S 
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE +G +H F + D+THPQ  EI   L+ +  +++  GY PDT  V  D++  EKE  LF
Sbjct: 857 IEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALF 916

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSE+LAI +GL+   P  PI I KNLR+C DCHTA KFIS+   R+I+ RD +RFHHFK
Sbjct: 917 YHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFK 976

Query: 789 HGSCSCMDFW 798
            G CSC DFW
Sbjct: 977 DGVCSCGDFW 986



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/615 (25%), Positives = 306/615 (49%), Gaps = 78/615 (12%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C  FK      +I + +  +G+  D F  + LI         I      +IF  +  
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAK---QIFDDMRE 173

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            + + +N ++  Y+Q  + ++A  L++ M+ ++V  D  T+  +  A A   +V +G+ +
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGREL 233

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY------ 207
           ++ +LKAG+D+D++V   LINM+  CGD+  A K+FD  P  DLV+W S++ G       
Sbjct: 234 YNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRF 293

Query: 208 --------------VNADNV---------------EEAKFIYNKMPE----RNIIASNSM 234
                         V  D V               E+ K ++ +M E      I    ++
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAI 353

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++ + G++ +A  +F  +  +++VSW+A+I+ + Q+   +EA + F  MI+  +  + 
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V  +S+L AC++ + +K G  +                                + + +A
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQ-------------------------------DHIIEA 442

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G+  D     +++S Y KCGS++ A  +F+ + +++VV+W+ MI+ Y QH+Q+   L+ F
Sbjct: 443 GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF 502

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             +   GI+P+ +T  S+++ C    +L+ GKW+H  I K GL+ +  +   L+ M++  
Sbjct: 503 QALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A  +F+   ++ + SWN +I GF  +G    + + F  M++SG+ P++ITF G+L
Sbjct: 563 GDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLL 622

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC     + EG R  +++I E   + +      ++ +  + G +++A ++   +P   +
Sbjct: 623 NACASPEALTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKN 680

Query: 595 VATWGALLGACKKHG 609
           V +W +++    +HG
Sbjct: 681 VYSWTSMITGYAQHG 695



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 144/555 (25%), Positives = 271/555 (48%), Gaps = 76/555 (13%)

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           ++++ +   TY  L Q      ++ +G+ I++H+ K+G   D+++ NTLINMYA CG+  
Sbjct: 103 SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTI 162

Query: 184 AARKLFDESPVLDLVSWNSILAGYV----------------------------------- 208
           +A+++FD+    D+ SWN +L GYV                                   
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 209 NADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +A NV++ + +YN +     + ++    ++I +  + G++ +A ++F  +P +DLV+W++
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+   ++  +++A  LF  M +  V  D+V  VS+L AC +   ++ G  VHA   ++G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  I +  A++ MY+ CG +  A ++FD     +++SW +MI+G+ + G +++A   F+
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            MIE                                GI P+  T +S++ AC+   AL +
Sbjct: 403 KMIES-------------------------------GIEPNRVTFMSILGACSSPSALKR 431

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G+ I  +I + G   +  + T L+ MY K G + +A  VF    ++ V +WNA+I  +  
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNS 563
           +   D +L  F  + K G+ PN  TF  +L  C+    ++ G   HF  +I +  LE + 
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--LIMKAGLESDL 549

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
                +V +    G L  A+ L   MP   D+ +W  ++    +HG +++     + + E
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 624 --LQPDHDGFHVLLS 636
             ++PD   F  LL+
Sbjct: 609 SGIKPDKITFTGLLN 623



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 260/499 (52%), Gaps = 55/499 (11%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLV--SWNSILAGYVNADNVEEAKFIY 220
           D    N ++N  +  G  + A ++ +  +S  + +   +++++L   +   N+ + + IY
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 221 NKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           N +     + +I   N++I ++ + GN   A ++F +M +KD+ SW+ L+  Y Q+ +YE
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA  L   M+   V  D+   VS+L+ACA+   V  G  ++ L +K              
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-------------- 239

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                            AG + DL    ++I+ ++KCG +  A  +FD +  +D+V+W++
Sbjct: 240 -----------------AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI+G A+H +F +  +LF  M+  G++PD+   VS++ AC H  AL+QGK +HA +++ G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                 +GT ++ MY K G +++ALEVF   + + V SW A+I GFA +G  D++   F+
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDL 572
           +M +SG+ PN +TF+ +LGAC     +  G +     IQ+H +E     + +    ++ +
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQ-----IQDHIIEAGYGSDDRVRTALLSM 457

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
             + G LK+A  + E +    +V  W A++ A  +H  ++      + L++  ++P+   
Sbjct: 458 YAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 631 FHVLLSNIHASK----GRW 645
           F  +L+   +S     G+W
Sbjct: 517 FTSILNVCKSSDSLELGKW 535


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/561 (46%), Positives = 370/561 (65%), Gaps = 5/561 (0%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQN-EMYEEALVLFMNMI-DHRVMVDEVVVVS 299
            ++  A +LF ++P+ DL  ++ +I  +  +   Y +++ +F ++I D     +    V 
Sbjct: 224 ASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVF 283

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
              AC N   V+ G  V   AVK+G++  + + NALI M+   G +  A  +FD+  + D
Sbjct: 284 AFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRD 343

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
             SWN+MI  Y+  G++  A+ LFD M E+DVVSWST+I+GY Q   F E L  F +M  
Sbjct: 344 FYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 403

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             ++P+E T+VS ++AC++LVALDQGKWIH YIR++ +K+N  L  +LIDMY K G +D+
Sbjct: 404 SEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDS 463

Query: 480 ALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           A  VFH  + ++ V  WNA+I GFAM+G  ++++ +F +MK   V+PN++TF+ +L AC 
Sbjct: 464 ASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACS 523

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H  +V EG  +F  M  ++ + P  +HYGCMVDLL R+G LK++EE+I SMPM+PDVA W
Sbjct: 524 HGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIW 583

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM-MVR 657
           GALL AC+ + D E G R+GR + E+ P+H G +VLL NI+++ GRW++   VR    + 
Sbjct: 584 GALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEIN 643

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
               KIPG S IE NG+ HEFL GDR+HPQ  EI + LDEM  KLK+ GY P+  EV  D
Sbjct: 644 SDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLD 703

Query: 718 IDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
            D EE KET L  HSEKLAIAFGL+  +P  PIRI+KNLR+C DCH A KFIS+ +DR I
Sbjct: 704 FDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVI 763

Query: 777 VVRDRHRFHHFKHGSCSCMDF 797
           +VRDR R+HHFK G CSC D+
Sbjct: 764 IVRDRMRYHHFKDGICSCKDY 784



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/587 (23%), Positives = 258/587 (43%), Gaps = 114/587 (19%)

Query: 15  KSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           K+ +N KP     +N S L + +  C+S  Q  Q  + +I T  I     A++ +K    
Sbjct: 166 KNMINTKPFH--YVNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLK---- 219

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY-IQRNVPQQAICLYKLMLNNNVGVDN-Y 132
            +    ++Y+ K+F  +  P+ FI+NTM++++ +  +    +I +++ ++ ++    N Y
Sbjct: 220 NVALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRY 279

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           ++     A    + V EG+ +  H +K G D +V+V N LI M+   G +  AR +FD +
Sbjct: 280 SFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSA 339

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
              D  SWN+++  YV + N+  AK ++++M ER+++                       
Sbjct: 340 VDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVV----------------------- 376

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
                   SWS +I+ Y Q   + EAL  F  M+   V  +E  +VS L+AC+NL  +  
Sbjct: 377 --------SWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQ 428

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--DLISWNSMISGY 370
           G  +H    +  I+    L  +LI MY+ CGEI +A  +F   H +   +  WN+MI G 
Sbjct: 429 GKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHE-HKVKRKVWPWNAMIGG- 486

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
                                         +A H +  E +++F +M+   + P++ T +
Sbjct: 487 ------------------------------FAMHGKPEEAINVFEKMKVEKVSPNKVTFI 516

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           ++++AC+H   + +GK                        Y +L   D  +         
Sbjct: 517 ALLNACSHGYMVKEGK-----------------------SYFELMASDYGI-------NP 546

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            +  +  ++   + +G    S EM   M    + P+   +  +L ACR    ++ G+R  
Sbjct: 547 EIEHYGCMVDLLSRSGHLKDSEEMILSMP---MAPDVAIWGALLNACRIYKDMERGYR-I 602

Query: 551 NSMIQEHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESMPMSPD 594
             +I+E  ++PN  H GC V   ++   +G   EA  + E   ++ D
Sbjct: 603 GRIIKE--IDPN--HIGCNVLLGNIYSTSGRWNEARMVREKNEINSD 645


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/557 (45%), Positives = 362/557 (64%), Gaps = 1/557 (0%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRVMVDEVVVVSVL 301
           N+  + ++  +  K  L + +++I  Y ++    ++   +  ++  + VM  +    + L
Sbjct: 58  NLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFL 117

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
                 +  +AG +VH   +K G E   ++++ LI MY+    +++  ++F++    DL+
Sbjct: 118 VRTCAQSACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLV 177

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
              +M+S   KCG +  AR LFD+M ++D VSW+ MI+GYAQ  Q  E L+LF  MQ  G
Sbjct: 178 CQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDG 237

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           ++ +E +++SV++ACTHL ALDQGKW HAYI KN +++   LGT L+DMY K G VD AL
Sbjct: 238 VKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRAL 297

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF    EK V +W+  I G AMNG   K LE+FS MK  G+ PNEITF+ VL  C  +G
Sbjct: 298 KVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVG 357

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            VDEG  HF+SM ++H +EP  +HYGCMVDL GRAG L+EA   I +MP+ P    WGAL
Sbjct: 358 FVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGAL 417

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           L AC+ + + E+GE   RKL+E++  + G +V LSNI+A  G WD V  VR  M   G+ 
Sbjct: 418 LNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGIS 477

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K+PGCS++E NG +HEF +GD++HP  + I+ M  E++K+LKL GY   T  V FDI++E
Sbjct: 478 KLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEE 537

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           EKE  L +HSEK+AIAFGL ++    PIRI+KNLRIC DCH  +K IS+ F+REI+VRDR
Sbjct: 538 EKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDR 597

Query: 782 HRFHHFKHGSCSCMDFW 798
           +RFHHFK G CSC DFW
Sbjct: 598 NRFHHFKDGECSCKDFW 614



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 215/467 (46%), Gaps = 78/467 (16%)

Query: 42  SFKQFTQILSQMILTGLIAD-----TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + K+  QI +Q+++ GL+ +      F AS  ++  T+LL      YS +I      P  
Sbjct: 21  TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLL------YSNQILDQCAKPTL 74

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLLAQASALRLSVFEGKLIH 154
           F  N+M+RAY +   P ++   Y  +L +N  +  DNYT+  L +  A + +   G  +H
Sbjct: 75  FALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA-QSACEAGPAVH 133

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             ++K GF+ D +V + LI MYA    LS+  ++F+     DLV                
Sbjct: 134 GALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLV---------------- 177

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                             +M+    + G++  A  LF  MP++D VSW+A+I+ Y Q   
Sbjct: 178 ---------------CQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQ 222

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
             EAL LF  M    V V+EV ++SV++AC +L  +  G   HA   K  I+  +NL  A
Sbjct: 223 SREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTA 282

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY  CG +  A K+F   +  ++ +W++ I G                         
Sbjct: 283 LVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGG------------------------- 317

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIR 453
              ++GY Q     + L LF  M+H GI P+E T +SV+  C+ +  +D+G+    +  R
Sbjct: 318 -LAMNGYGQ-----KCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKR 371

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALI 499
            +G++        ++D+Y + G ++ AL   +    K    +W AL+
Sbjct: 372 DHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALL 418


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 381/619 (61%), Gaps = 64/619 (10%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           ++  A  +F  + ++ L+ W+ +I CY +N+   + +VLF  ++ H  + D   +  V+ 
Sbjct: 62  DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELV-HEYLPDNFTLPCVIK 120

Query: 303 ACANLTVVKAGTSVHALAVKIG--------------------IECY-----------INL 331
            CA L VV+ G  +H LA+KIG                    I+C            + L
Sbjct: 121 GCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVL 180

Query: 332 QNALIHMYSSCGEI-------------------------------TTAEKLFDAGHNLDL 360
            N+LI  Y+ CGEI                                +A KLFD     +L
Sbjct: 181 WNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNL 240

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +SWN+MI+GY+K G  + A  LF  M   D+V+W+ MI+GY  + QF + + +F  M   
Sbjct: 241 VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKL 300

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G RP  ATLVSV+SA + L  L +G+WIH+Y+ KNG +++ ILGT+LI+MY K GC+++A
Sbjct: 301 GSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 360

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           L VF   ++K V  W A+I+G  ++G+A+ +L +F EM K+G+ PN I F+GVL AC H 
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLVD+G ++F+ M+ E+++EP  +HYGC+VD+L RAG L+EA+  IE+MP+SP+   W +
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LLG  + HG  ++GE   ++++E+ P+  G ++LLSN++A+ G W+ V  VR MM +RG 
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K PGCS +E  G +HEF+ GD +HPQ  EI   + EM +KLK  G+ PDT +V   I+ 
Sbjct: 541 RKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEG 600

Query: 721 E-EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           E EKE  L  HSE+LAIAFGLI + P  PIRIMKNLR+CNDCH+  K +S+ + REI+VR
Sbjct: 601 EKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVR 660

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK+GSCSCMD+W
Sbjct: 661 DNCRFHHFKNGSCSCMDYW 679



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 260/581 (44%), Gaps = 107/581 (18%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMSYSFKIFAFLESPNGFIFNTM 102
           ++  Q+ +  + T +    F +SRL+   +D  P I ++ Y+  IF  ++  +   +NT+
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSD--PKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           ++ Y++       I L+  +++  +  DN+T P + +  A    V EGK IH   LK GF
Sbjct: 85  IKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGF 143

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-------------- 208
            SDV+V  +L+NMY+ CG++  ARK+FD     D+V WNS++ GY               
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 209 -----------------NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251
                                VE A+ ++++MP RN+++ N+MI  + + G+   A  LF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            +MP  DLV+W+ +I+ YE N  + +A+ +F  M+          +VSVLSA + L V+ 
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H+   K G E    L  +LI MY+ CG I                          
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCI-------------------------- 357

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                E A  +F A+ +K V  W+ +I G   H   +  L+LF+EM   G++P+    + 
Sbjct: 358 -----ESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIG 412

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V++AC H   +D G+                      DM M    ++  LE         
Sbjct: 413 VLNACNHAGLVDDGR-------------------QYFDMMMNEYKIEPTLE--------- 444

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
              +  L+      G  +++      M    ++PN++ ++ +LG  R+ G +D G     
Sbjct: 445 --HYGCLVDILCRAGHLEEAKNTIENMP---ISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 499

Query: 552 SMIQEHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESM 589
            +I+   + P +   GC +   ++   +GM ++   + E M
Sbjct: 500 RVIE---VAPET--IGCYILLSNMYAASGMWEKVSHVREMM 535


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/790 (35%), Positives = 437/790 (55%), Gaps = 74/790 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ S ++  G   D F  + LI      +    +  + K+F  L   +   + +M+    
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMH---IKCGGVDDALKVFNNLPRRDLITWTSMITGLA 282

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +    +QA  L+++M    V  D   +  L +A     ++ +GK +H  + + G D+++Y
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIY 342

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V   L++MY  CG +  A ++F+     ++VSW +++AG+     +EEA   +NKM E  
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402

Query: 228 IIAS---------------------------------------NSMIVLFGRKGNVAEAC 248
           I  +                                        +++ ++ + G++ +A 
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDAR 462

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            +F+ + K+++V+W+A+I+ Y Q+E Y+ A+  F  ++   +  D     S+L+ C +  
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPD 522

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            ++ G  V +L ++ G E  ++++NAL+ M                              
Sbjct: 523 ALELGKWVQSLIIRAGFESDLHIRNALVSM------------------------------ 552

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            ++ CG +  A  LF+ M E+D+VSW+T+I+G+ QH +       F  MQ  G++PD+ T
Sbjct: 553 -FVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQIT 611

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
              +++AC    AL +G+ +HA I +  L  + ++GT LI MY K G +D+A  VFH   
Sbjct: 612 FTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP 671

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +K V SW ++I G+A +G   ++LE+F +M++ GV P+ ITFVG L AC H GL+ EG  
Sbjct: 672 KKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLH 731

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           HF SM ++  +EP  +HYGCMVDL GRAG+L EA E I  M + PD   WGALLGAC+ H
Sbjct: 732 HFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVH 790

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            D E+ E+V +K +EL P+ DG +V+LSNI+A+ G W +V ++R +M+ RGVVK PG S 
Sbjct: 791 LDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSW 850

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE +G +H F + D+THPQI EI   L  +  ++K  GY PDT  V  D++  EKE  L 
Sbjct: 851 IEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALC 910

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSE+LAIA+GL+   P  PI I KNLR+C DCHTA K IS+   R+I+ RD +RFHHFK
Sbjct: 911 HHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFK 970

Query: 789 HGSCSCMDFW 798
            G CSC DFW
Sbjct: 971 DGVCSCGDFW 980



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/563 (24%), Positives = 277/563 (49%), Gaps = 72/563 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF  +   + + +N ++  Y+Q    ++A  L++ M+ + V  D YT+  +  A A   
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +V +G  +   +L AG+D+D++V   LINM+  CG +  A K+F+  P  DL++W S++ 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 206 GY--------------------VNADNV---------------EEAKFIYNKMPE----R 226
           G                     V  D V               E+ K ++ +M E     
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDT 339

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            I    +++ ++ + G++ +A  +F  +  +++VSW+A+I+ + Q+   EEA + F  MI
Sbjct: 340 EIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMI 399

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  +  + V  +S+L AC+  + +K G  +H   +K G      ++ AL+ MY+ CG + 
Sbjct: 400 ESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLM 459

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A  +F+     ++++WN+MI+ Y+                               QH++
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYV-------------------------------QHEK 488

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           +   ++ F  +   GI+PD +T  S+++ C    AL+ GKW+ + I + G + +  +   
Sbjct: 489 YDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNA 548

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ M++  G + +A+ +F+   E+ + SWN +I GF  +G    + + F  M++SGV P+
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPD 608

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           +ITF G+L AC     + EG R  +++I E  L+ +      ++ +  + G + +A  + 
Sbjct: 609 QITFTGLLNACASPEALTEG-RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 587 ESMPMSPDVATWGALLGACKKHG 609
            ++P   +V +W +++    +HG
Sbjct: 668 HNLP-KKNVYSWTSMITGYAQHG 689



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 264/552 (47%), Gaps = 74/552 (13%)

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           ++ +   TY  L Q      ++ +G+ IH+H+  +    D+++ N LI+MYA CG+ ++A
Sbjct: 99  HIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSA 158

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------------- 226
           +++FDE P  D+ SWN +L GYV     EEA  ++ +M      P++             
Sbjct: 159 KQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADA 218

Query: 227 --------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                               ++    ++I +  + G V +A ++F  +P++DL++W+++I
Sbjct: 219 KNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMI 278

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           +   ++  +++A  LF  M +  V  D+V  VS+L AC +   ++ G  VHA   ++G++
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             I +  AL+ MY+ CG +  A ++F+     +++SW +MI+G+ + G +E+A   F+ M
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           IE                                GI P+  T +S++ AC+   AL QG+
Sbjct: 399 IES-------------------------------GIEPNRVTFMSILGACSRPSALKQGR 427

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH  I K G   +  + T L+ MY K G + +A  VF    ++ V +WNA+I  +  + 
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             D ++  F  + K G+ P+  TF  +L  C+    ++ G +   S+I     E +    
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIR 546

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--L 624
             +V +    G L  A  L   MP   D+ +W  ++    +HG+++      + + E  +
Sbjct: 547 NALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605

Query: 625 QPDHDGFHVLLS 636
           +PD   F  LL+
Sbjct: 606 KPDQITFTGLLN 617



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 257/504 (50%), Gaps = 52/504 (10%)

Query: 170 NTLINMYAVCGDLSAARK--LFDESPVLDL--VSWNSILAGYVNADNVEEAKFIYNKMP- 224
           N  +N  +  G LS A    L  +SP + +   +++S+L   +   N+ + + I+N +  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 225 ---ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
              + +I   N +I ++ + GN   A ++F EMP KD+ SW+ L+  Y Q+  YEEA  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
              M+   V  D+   V +L+ACA+   V  G  + +L +  G +  + +  ALI+M+  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG +  A K+F+     DLI+W SMI+                               G 
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMIT-------------------------------GL 281

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           A+H QF +  +LF  M+  G++PD+   VS++ AC H  AL+QGK +HA +++ GL    
Sbjct: 282 ARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEI 341

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +GT L+ MY K G +++ALEVF+  + + V SW A+I GFA +G  +++   F++M +S
Sbjct: 342 YVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIES 401

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ PN +TF+ +LGAC     + +G +  + +I+   +  + +    ++ +  + G L +
Sbjct: 402 GIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI-TDDRVRTALLSMYAKCGSLMD 460

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIH 639
           A  + E +    +V  W A++ A  +H  ++      + L++  ++PD   F  +L+   
Sbjct: 461 ARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK 519

Query: 640 ASK----GRWDDVLEVRGMMVRRG 659
           +      G+W     V+ +++R G
Sbjct: 520 SPDALELGKW-----VQSLIIRAG 538


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/643 (40%), Positives = 398/643 (61%), Gaps = 1/643 (0%)

Query: 156  HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            H  +   + + Y   T+I  +A CG L  A +L++  P   + +  +++  Y     +++
Sbjct: 417  HFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQK 476

Query: 216  AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
            A+ I++++   N++A N++I  + + G + EA  LF++MP K+  SW+A+I+ + QNE  
Sbjct: 477  ARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEES 536

Query: 276  EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
             EAL L + +     +  +    S LSACAN+  V+ G  +H+LA+K G +    + N L
Sbjct: 537  REALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGL 596

Query: 336  IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
            I MY+ CG +     +F      D +SWNS+ISG  +   ++ AR +F+ M ++DVVSW+
Sbjct: 597  ISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWT 656

Query: 396  TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
             +IS Y Q       L LF++M   GI+P++ T+ S++SAC +L A+  G+  HA I K 
Sbjct: 657  AIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKL 716

Query: 456  GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
            G      +G +LI MY K G  ++   VF    E  + +WNA+++G A NGL  +++++F
Sbjct: 717  GFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIF 775

Query: 516  SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             +M+  G+ P++++F+GVL AC H GLVDEG  HFNSM Q++ + P   HY CMVDLLGR
Sbjct: 776  EQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGR 835

Query: 576  AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            AG L EAE LIE+MP+ PD   W ALLGAC+ H + E+G+RV  +L ++       +VLL
Sbjct: 836  AGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLL 895

Query: 636  SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            SN+ AS+G WD V E+R +M  +G+ K PG S I+    +H F+ GDRTH QI EI + L
Sbjct: 896  SNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSAL 955

Query: 696  DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
             E     +  GY PDT  V  D+++E+K+  L  HSEKLA+ FG+++    +PI+I+KNL
Sbjct: 956  KEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNL 1015

Query: 756  RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            RIC DCHT  KF+S+   R+I++RD +RFHHF+ GSCSC D+W
Sbjct: 1016 RICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/556 (25%), Positives = 257/556 (46%), Gaps = 100/556 (17%)

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V E +L+ D    A    ++     L+  YA  G +  AR++F+     ++VSWN++++G
Sbjct: 218 VDEARLLFD----AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISG 273

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           YV   +++ A+ ++++MPE+N+ + NS++  +     ++EA  LF +MP+++ VSW  +I
Sbjct: 274 YVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMI 333

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y     Y EA  +F+ M       D+ + V VLSA   L  ++   S+  +A+K G E
Sbjct: 334 SGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYE 393

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC------------- 373
             + + +A+++ Y+  G +  A   F+     +  SW +MI+ + +C             
Sbjct: 394 GDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV 453

Query: 374 ------------------GSVEKARALFDAMIEKDVV----------------------- 392
                             G ++KAR +FD ++  +VV                       
Sbjct: 454 PEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQ 513

Query: 393 --------SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                   SW+ MI+G+ Q+++  E L L +E+   G  P +++  S +SAC ++  ++ 
Sbjct: 514 KMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEI 573

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G+ IH+   K G + NS +   LI MY K G V++   VF     K   SWN+LI G + 
Sbjct: 574 GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSE 633

Query: 505 NGLADK-------------------------------SLEMFSEMKKSGVTPNEITFVGV 533
           N + D                                +L++F +M   G+ PN++T   +
Sbjct: 634 NYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 693

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC ++G +  G + F+++I +   +        ++ +  + G  ++   + E MP   
Sbjct: 694 LSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EH 750

Query: 594 DVATWGALLGACKKHG 609
           D+ TW A+L  C ++G
Sbjct: 751 DLITWNAVLVGCAQNG 766



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 197/414 (47%), Gaps = 49/414 (11%)

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRL 250
           E+P   L   N+ +        VEEA+ ++N+M +R++++ NSMI  + + G V EA  L
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLL 224

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F     K++ +W+ L++ Y +    EEA  +F +M +  V+                   
Sbjct: 225 FDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVS------------------ 266

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
                                 NA+I  Y   G++  A KLFD     ++ SWNS+++GY
Sbjct: 267 ---------------------WNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 305

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
             C  + +AR LFD M E++ VSW  MISGY     + E   +F++M     RPD++  V
Sbjct: 306 CHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV 365

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
            V+SA T L  L+    +     K G + + ++G+ +++ Y + G +D A+  F    E+
Sbjct: 366 VVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
              SW  +I  FA  G  D +++++  + +  V     T   ++ A   +G + +    F
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIF 481

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           + +     L PN   +  ++    + GMLKEA++L + MP+  + A+W A++  
Sbjct: 482 DEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIAG 529



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 225/507 (44%), Gaps = 106/507 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDN-YTYPLLAQASALR 144
           +F  +   N   +  M+  ++Q    ++A+  L +L  + +V  D+ +T  L A A+   
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           + +  G++IH   +K G   + YV N LI+MYA CG++     +F    V D VSWNS++
Sbjct: 571 VEI--GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLI 628

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +G      +++A+ ++ KMP+R++                               VSW+A
Sbjct: 629 SGLSENYMLDDARVVFEKMPKRDV-------------------------------VSWTA 657

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS Y Q    E AL LF++M+   +  +++ V S+LSAC NL  +K G   HAL  K+G
Sbjct: 658 IISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLG 717

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            + ++ + N+LI MY  CG                                 E    +F+
Sbjct: 718 FDTFLFVGNSLITMYFKCG--------------------------------YEDGFCVFE 745

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M E D+++W+ ++ G AQ+    E + +F +M+  GI PD+ + + V+ AC+H   +D+
Sbjct: 746 EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDE 805

Query: 445 GKWIH--AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           G W H  +  +K G+       T ++D+  + G +  A                ALI   
Sbjct: 806 G-WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEA---------------EALI--- 846

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
                           +   V P+ + +  +LGACR    V+ G R    + Q  +  P 
Sbjct: 847 ----------------ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK--PK 888

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESM 589
           S  Y  + +L    GM  +  E+ + M
Sbjct: 889 SATYVLLSNLFASQGMWDKVAEIRKLM 915


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/572 (44%), Positives = 373/572 (65%), Gaps = 7/572 (1%)

Query: 231 SNSMIVLFGR---KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           S S IV F      G++  A  +F ++P     + +++I  Y    +  +A++ +  M+ 
Sbjct: 12  SASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMML 71

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  D     S+  +C    V+  G  +H  + K+G      +QN L++MYS+CG + +
Sbjct: 72  QGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 128

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQ 406
           A K+FD   N  ++SW +MI  Y +     +A  LF  M I  ++  W+ MI+G+ +   
Sbjct: 129 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + E LSLF EMQ  G++ D+ T+ S++ ACTHL AL+ GKW+H YI K  ++++  LGT 
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 248

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G +++A+ VF    EK V +W ALI+G AM G   K+LE+F EM+ S V P+
Sbjct: 249 LVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 308

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITFVGVL AC H GLV+EG  +FNSM  ++ ++P+ +HYGCMVD+LGRAG + EAE+LI
Sbjct: 309 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 368

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           ++MPM+PD      LL AC+ HG+  + ER  ++L+EL P + G +VLLSNI++S   W+
Sbjct: 369 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 428

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
              ++R +MV R + K PGCS IE  G++HEF+ GD +HPQ +EI   LD+M ++LK  G
Sbjct: 429 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 488

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PD  EV FD+D++EKE  L  HSEKLAIAFGL++ +P  PIR++KNLR+C+DCH+A K
Sbjct: 489 YVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMK 548

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           FIS  ++REI+VRDR+RFHHF  GSCSC DFW
Sbjct: 549 FISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 235/512 (45%), Gaps = 103/512 (20%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           M+ T L  D F+AS+++ F   L     + Y+  +F  + +P  F  N+++R Y  +N+P
Sbjct: 1   MLRTCLFVDPFSASKIVAFCA-LHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLP 59

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           +QAI  Y+LM+   +  D +T+P L ++  +   + EGK +H H  K GF SD Y+ NTL
Sbjct: 60  RQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGKQLHCHSTKLGFASDAYIQNTL 116

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232
           +NMY+ CG L +ARK+FD+     +VSW +++  Y   D   EA  ++ +M     IASN
Sbjct: 117 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME----IASN 172

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
                                     L  W+ +I+ + ++  YEEAL LF  M    V  
Sbjct: 173 --------------------------LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 206

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D+V + S+L AC +L  ++ G  +H    K  IE  + L  AL+ MY+ CG I +A ++F
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 D+++W ++I G   CG   KA                               L 
Sbjct: 267 QEMPEKDVMTWTALIVGLAMCGQGLKA-------------------------------LE 295

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMY 471
           LF EMQ   ++PD  T V V++AC+H   +++G  + ++   K G++ +       I+ Y
Sbjct: 296 LFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS-------IEHY 348

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
              GC+ + L                        G A +  E    ++   + P+    V
Sbjct: 349 ---GCMVDML------------------------GRAGRIAEAEDLIQNMPMAPDYFVLV 381

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           G+L ACR  G +    R    +I+   L+P +
Sbjct: 382 GLLSACRIHGNLVVAERAAQQLIE---LDPKN 410


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/576 (44%), Positives = 367/576 (63%), Gaps = 33/576 (5%)

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           M +R ++  +S+I ++    +VA A  LF  + +  +V W+A+I+ Y +N  + E + +F
Sbjct: 151 MADRFVL--SSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMF 208

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M++  V  DE+ +VSV++AC  +   K G  V     + G+    NL  ALI MY+  
Sbjct: 209 KGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA-- 266

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                                        KCG + KAR LFD M  +DVV+WS MISGY 
Sbjct: 267 -----------------------------KCGELGKARRLFDGMQSRDVVAWSAMISGYT 297

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q DQ  E L+LF EMQ   + P++ T+VSV+SAC  L AL+ GKW+H+YIR+  L +  I
Sbjct: 298 QADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTII 357

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           LGT L+D Y K GC+D+A+E F     K   +W ALI G A NG   ++LE+FS M+K+ 
Sbjct: 358 LGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKAS 417

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P ++TF+GVL AC H  LV+EG RHF+SM Q++ ++P ++HYGC+VDLLGRAG++ EA
Sbjct: 418 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEA 477

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            + I +MP+ P+   W ALL +C  H + E+GE   +++V L P H G ++LLSNI+AS 
Sbjct: 478 YQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASV 537

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G+W +   +R  M  RG+ K PGCS+IE +G++ EF A D  HPQ+ EI   ++EM  ++
Sbjct: 538 GQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRI 597

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K+ GY P+T +V  ++D+ EKE ++  HSEKLAIAFGL+ + P   IR+ KNLR+C DCH
Sbjct: 598 KMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCH 657

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +A K IS+ ++REIVVRDR+RFHHFK G+CSC D+W
Sbjct: 658 SATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 219/497 (44%), Gaps = 80/497 (16%)

Query: 72  STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVD 130
           S  LLP+    +       L +P    +N +MRA +    P+ A+ L+  ML+  +V  D
Sbjct: 62  SPTLLPYAVSLFRLGPRPPLSTP---CYNVLMRALLHAGHPEDALHLFVEMLDVASVCPD 118

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
            +T     ++ +   ++  G+ I  + +K G  +D +V ++LI+MYA C D++AA+ LFD
Sbjct: 119 QHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFD 178

Query: 191 ESPVLDLVSWNSILAGYVNADNVEE----------------------------------- 215
                 +V WN+I+  Y+   N  E                                   
Sbjct: 179 AVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKL 238

Query: 216 ----AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
               A+++  K   RN     ++I ++ + G + +A RLF  M  +D+V+WSA+IS Y Q
Sbjct: 239 GKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQ 298

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
            +   EAL LF  M    V  ++V +VSVLSACA L  ++ G  VH+   +  +   I L
Sbjct: 299 ADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIIL 358

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             AL+  Y+ CG I  A + F++    +  +W ++I                        
Sbjct: 359 GTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI------------------------ 394

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-IHA 450
                   G A + +  E L LF  M+   I P + T + V+ AC+H   +++G+    +
Sbjct: 395 -------KGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDS 447

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLAD 509
             +  G+K  +     ++D+  + G +D A +       E     W AL+   A++    
Sbjct: 448 MTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVH---- 503

Query: 510 KSLEMFSEMKKSGVTPN 526
           K++E+  E  K  V+ N
Sbjct: 504 KNVEIGEEALKQIVSLN 520



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 42/304 (13%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I +  +  GL+AD F  S LI          +++ +  +F  +E     ++N ++ AY++
Sbjct: 141 IQAYAVKRGLMADRFVLSSLIHMYASCR---DVAAAQLLFDAVEENGVVMWNAIITAYMK 197

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
                + + ++K ML   V  D  T   +  A         GK + ++V + G   +  +
Sbjct: 198 NGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNL 257

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
              LI+MYA CG+L  AR+LFD     D+V+W+++++GY  AD   EA  ++++M     
Sbjct: 258 MTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEV 317

Query: 225 ERN-----------------------------------IIASNSMIVLFGRKGNVAEACR 249
           E N                                   II   +++  + + G + +A  
Sbjct: 318 EPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVE 377

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
            F+ MP K+  +W+ALI     N    EAL LF +M    +   +V  + VL AC++  +
Sbjct: 378 AFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCL 437

Query: 310 VKAG 313
           V+ G
Sbjct: 438 VEEG 441


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/575 (44%), Positives = 368/575 (64%), Gaps = 40/575 (6%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E ++I    ++  + + G++  A R+F  MP++D+V+ +A+IS   ++   EEA  LF N
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDN 101

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M +              ++C+                           N++I  Y   G+
Sbjct: 102 MTER-------------NSCS--------------------------WNSMITCYCKLGD 122

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQ 403
           I +A  +FD     D++SWN++I GY K   +  A+ LF  M   ++ V+W+TMIS Y Q
Sbjct: 123 INSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQ 182

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             +F   +S+F +MQ   ++P E T+VS++SAC HL ALD G+WIH YIR   LKI+ +L
Sbjct: 183 CGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVL 242

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           G  LIDMY K G ++ A++VFHG   K +  WN++I+G  MNG  ++++  F  M+K G+
Sbjct: 243 GNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI 302

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+ +TFVG+L  C H GL+  G R+F+ M+  + LEP  +HYGCMVDLLGRAG LKEA 
Sbjct: 303 KPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEAL 362

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           ELI +MPM P+    G+LL AC+ H D ++GE+V ++L+EL P   G +V LSN++AS  
Sbjct: 363 ELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLS 422

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RWDDV   R +M++RGV K PGCS IE N I+HEF+AGD +HPQ  +I+  LDE+AK+LK
Sbjct: 423 RWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELK 482

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            +G+ P+T  V  DI++EEKE  +  HSE++A+AFGL++  P   IR++KNLR C+DCH+
Sbjct: 483 GQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHS 542

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           A K IS AF REI+VRDR RFHHF++GSCSC D+W
Sbjct: 543 AMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 183/413 (44%), Gaps = 68/413 (16%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           ML N+V     ++ L+ ++ A+      G+  H  ++K GF+ D+ +   L++ YA  GD
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRK 241
           L  A+++F   P  D+V+ N++++       VEEA+ +++ M ERN  + NSMI  + + 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120

Query: 242 GNVAEACRLFKEMPKKDLVSWSA--------------------------------LISCY 269
           G++  A  +F   P KD+VSW+A                                +IS Y
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            Q   +  A+ +F  M    V   EV +VS+LSACA+L  +  G  +H       ++  +
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            L NALI MY  CG +  A  +F      ++  WNS+I G    G  E            
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE------------ 288

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWI 448
                              E ++ F+ M+  GI+PD  T V ++S C+H   L  G ++ 
Sbjct: 289 -------------------EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYF 329

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              +   GL+        ++D+  + G +  ALE+      K     N++++G
Sbjct: 330 SEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 73/295 (24%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++   G   D+I    ++  Y K G ++ A+ +F  M  +DVV+ + MIS  ++H    E
Sbjct: 35  QIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEE 94

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
             +LF  M                                          NS    ++I 
Sbjct: 95  ARNLFDNMTER---------------------------------------NSCSWNSMIT 115

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIG-------------FAMNGLADKS----- 511
            Y KLG +++A  +F     K V SWNA+I G             F + G A  S     
Sbjct: 116 CYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNT 175

Query: 512 --------------LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
                         + MF +M+   V P E+T V +L AC H+G +D G    +  I+  
Sbjct: 176 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE-WIHGYIRTK 234

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           RL+ +      ++D+  + G L+ A ++   +    ++  W +++     +G  E
Sbjct: 235 RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGRGE 288



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +NTM+ AY+Q      AI +++ M + NV     T   L  A A   ++  G+ IH
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            ++       DV + N LI+MY  CG L AA  +F      ++  WNSI+ G       E
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 288

Query: 215 EAKFIYNKMPERNI 228
           EA   +  M +  I
Sbjct: 289 EAIAAFIVMEKEGI 302



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 9/194 (4%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M  + + P + +   ++ +C        G+  H  I K G + + IL T L+D Y K+G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A  VF G   + V + NA+I   + +G  +++  +F  M +     N  ++  ++  
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITC 116

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
              +G ++     F+    +  +  N+     ++D   ++  L  A+EL   M  + +  
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWNA-----IIDGYCKSKQLVAAQELFLLMGSARNSV 171

Query: 597 TWGALLGACKKHGD 610
           TW  ++ A  + G+
Sbjct: 172 TWNTMISAYVQCGE 185


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/753 (36%), Positives = 425/753 (56%), Gaps = 37/753 (4%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD--NYTYPLL 137
           +M  ++ +F  +   N   +  M+  Y++     +   ++++M +     D  N+   L 
Sbjct: 172 QMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLS 231

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV------------------- 178
           A      L V E  ++   VLK GF+SDV +  +++N+Y                     
Sbjct: 232 AVTGLQDLGVLE--VLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERN 289

Query: 179 -------------CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
                         G + AA  ++   PV  + S  ++L G      + EA+ ++ ++P+
Sbjct: 290 EYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPD 349

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
             +++ N+MI  + + G V EA  LF  MP ++ +SW+ +I+ Y QN   EEAL L   +
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
             + ++     + S   AC+++  ++ G  VH+LAVK G +    + NALI MY  C  +
Sbjct: 410 HRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNM 469

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
               ++F+     D +SWNS I+  ++   +E AR +FD M+ +DVVSW+T+IS YAQ +
Sbjct: 470 EYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAE 529

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E +  F  M H   +P+   L  ++S C  L +   G+ IH    K+G+    I+  
Sbjct: 530 RGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVAN 589

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+ MY K GC D+  +VF   EE+ + +WN  I G A +GL  ++++M+  M+  GV P
Sbjct: 590 ALMSMYFKCGCADSH-KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP 648

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE+TFVG+L AC H GLVDEG + F SM +++ L P  +HY CMVDLLGR G ++ AE+ 
Sbjct: 649 NEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKF 708

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I  MP+ PD   W ALLGACK H + E+G R   KL   +P + G +V+LSNI++S G W
Sbjct: 709 IYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMW 768

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            +V E+R +M +RGV K PGCS ++    +H F+ GD+ H +I EID  L ++   L+  
Sbjct: 769 VEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGT 828

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  V  DID+E+KE++L  HSEKLA+A+GL+      PI+IMKNLRIC DCHT  
Sbjct: 829 GYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFI 888

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KF+S    R+I +RD +RFHHF++GSCSC DFW
Sbjct: 889 KFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 147/626 (23%), Positives = 281/626 (44%), Gaps = 101/626 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N+M+ AY    + + A  L+  +   NV     T  +L    A   
Sbjct: 54  EVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNV----RTATILLSGYARLG 109

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V + + + D +     + +    N +++ Y   GD++ AR+LFD  P  D+ SWNS++ 
Sbjct: 110 RVLDARRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVT 165

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM------PKK-- 257
           GY ++  + +A  ++ +MP+RN++    MI  + R     +   +F+ M      P +  
Sbjct: 166 GYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSN 225

Query: 258 -------------------------------DLVSWSALISCYEQNEMYEEALVLFMNMI 286
                                          D+V  +++++ Y ++     AL + +   
Sbjct: 226 FASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRD---ASALDIAIKFF 282

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL-AVKIGIECYINLQNALIHMYSSCGEI 345
           D  V  +E    ++++A ++   + A  +V+    VK      I  Q AL+   + CG I
Sbjct: 283 DGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVK-----SIPSQTALLTGLARCGRI 337

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
           T A  LF+   +  ++SWN+MI+GY++ G V++A+ LFD M  ++ +SW+ MI+GYAQ+ 
Sbjct: 338 TEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNG 397

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E L L   +  +G+ P  ++L S   AC+H+ AL+ G+ +H+   K G + NS +  
Sbjct: 398 RSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCN 457

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI MY K   ++   +VF+    K   SWN+ I     N + + +  +F  M    ++ 
Sbjct: 458 ALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM----LSR 513

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK----- 580
           + +++  ++ A       DE    F +M+ EH  +PNS     ++ + G  G  K     
Sbjct: 514 DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 581 ---------EAEELIESMPMS-------------------PDVATWGALLGACKKHGDHE 612
                    ++E ++ +  MS                    D+ TW   +  C +HG   
Sbjct: 573 HTVAIKHGMDSELIVANALMSMYFKCGCADSHKVFDSMEERDIFTWNTFITGCAQHG--- 629

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNI 638
               +GR+ +++    +   VL + +
Sbjct: 630 ----LGREAIKMYEHMESVGVLPNEV 651



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 191/385 (49%), Gaps = 21/385 (5%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           A ++ I    R G + EA  +F  MP +D+++W+++IS Y  + M E+A +LF  +    
Sbjct: 35  AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGN 94

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI-ECYINLQNALIHMYSSCGEITTA 348
           V    ++    LS  A L     G  + A  V  G+ E      NA++  Y   G+IT A
Sbjct: 95  VRTATIL----LSGYARL-----GRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMA 145

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            +LFDA  + D+ SWNSM++GY     +  A  LF  M ++++V+W+ MISGY + +Q  
Sbjct: 146 RRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHG 205

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           +   +F  M H G  PD++   SV+SA T L  L   + +   + K G + + ++GT+++
Sbjct: 206 KGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSIL 265

Query: 469 DMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           ++Y +    +D A++ F G  E+   +W+ +I   +  G  D ++ ++       + P++
Sbjct: 266 NVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQ 324

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
              +  L  C   G + E    F     E   +P    +  M+    + GM+ EA+EL +
Sbjct: 325 TALLTGLARC---GRITEARILF-----EQIPDPIVVSWNAMITGYMQNGMVDEAKELFD 376

Query: 588 SMPMSPDVATWGALLGACKKHGDHE 612
            MP   +  +W  ++    ++G  E
Sbjct: 377 RMPFR-NTISWAGMIAGYAQNGRSE 400



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 49/269 (18%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC++ +   Q+ ++M     + DT + +    F   L+    +  +  IF  + S +   
Sbjct: 465 KCRNMEYVRQVFNRM----RVKDTVSWN---SFIAALVQNNMLEDARHIFDNMLSRDVVS 517

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T++ AY Q     +A+  +K ML+ +   ++    +L        S   G+ IH   +
Sbjct: 518 WTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAI 577

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G DS++ V N L++MY  CG  + + K+FD     D+ +WN+ + G        EA  
Sbjct: 578 KHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIK 636

Query: 219 IYNKMPERNIIASN----------------------------------------SMIVLF 238
           +Y  M    ++ +                                          M+ L 
Sbjct: 637 MYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLL 696

Query: 239 GRKGNVAEACRLFKEMP-KKDLVSWSALI 266
           GR G+V  A +   +MP + D V WSAL+
Sbjct: 697 GRTGDVQGAEKFIYDMPIEPDTVIWSALL 725



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           LD  + ++ I    + G + +AR +FDAM  +D+++W++MIS Y       +   LF  +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL-KINSILGTTLIDMYMKLGC 476
               +R    T   ++S    L     G+ + A    +G+ + N++    ++  Y++ G 
Sbjct: 91  SGGNVR----TATILLSGYARL-----GRVLDARRVFDGMPERNTVAWNAMVSCYVQNGD 141

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A  +F     + V+SWN+++ G+  +     +  +F +M +  +    +   G +  
Sbjct: 142 ITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRI 201

Query: 537 CRH 539
            +H
Sbjct: 202 EQH 204



 Score = 47.0 bits (110), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           HL A     W    +R     ++    +  I    +LG +  A EVF     + + +WN+
Sbjct: 10  HLSAAAAATWAPLPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNS 69

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I  +  +G+ + +  +F  +    V    I   G       +G V +  R F+ M    
Sbjct: 70  MISAYCNSGMLEDARILFDAISGGNVRTATILLSGYA----RLGRVLDARRVFDGMP--- 122

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL-GAC 605
             E N+  +  MV    + G +  A  L ++MP S DV +W +++ G C
Sbjct: 123 --ERNTVAWNAMVSCYVQNGDITMARRLFDAMP-SRDVTSWNSMVTGYC 168


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/540 (46%), Positives = 357/540 (66%), Gaps = 1/540 (0%)

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHA 318
           V+W+ALIS + +   + E+   F++M         V  VSVLSAC   T  V  G  VH 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             V  G+   + ++NAL+ MY+ C ++ +A K+FD      ++SW S++SG  + G V++
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           AR LFD M E+D VSW+ MI GY    +F E L +F EMQ+  +  DE T+VSVI+AC  
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+ G+W+  Y+ + G+K+++ +G  LIDMY K G ++ AL+VF G   +   +W A+
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I+G A+NG  ++++EMF  M +   TP+E+TF+GVL AC H GLVD+G   F SMI+ + 
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + PN  HYGC++DLLGRAG + EA + I+ MPM+P+   WG LL AC+ HG+ E+GE V 
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            +L+EL P++   ++LLSNI+A   RW+DV  +R  ++ +G+ K PGCS+IE +GIIHEF
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEF 507

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
           +AGD++HP   EI + L+ +   L   GY PD  EV  ++ ++EK+  L+ HSEKLAIAF
Sbjct: 508 VAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAF 567

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            L++  P   IRI+KNLR+C DCH A K ISR + RE+VVRDR RFHHF+HG CSC D+W
Sbjct: 568 ALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 153/337 (45%), Gaps = 63/337 (18%)

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V  G  +H  V+ +G   D+ V N L++MYA C D+ +A K+FD   V  +VSW S+L+G
Sbjct: 139 VLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSG 198

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                            R G V EA  LF  MP++D VSW+A+I
Sbjct: 199 -------------------------------LARLGQVDEARDLFDRMPERDTVSWTAMI 227

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             Y     + EAL +F  M    V  DE  +VSV++ACA L  ++ G  V     + GI+
Sbjct: 228 DGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK 287

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               + NALI MYS CG I  A  +F   H+ D  +W ++I G    G  E+A  +F  M
Sbjct: 288 MDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRM 347

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           I                  + SET             PDE T + V++ACTH   +D+G+
Sbjct: 348 I------------------RVSET-------------PDEVTFIGVLTACTHAGLVDKGR 376

Query: 447 -WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
            +  + I    +  N +    +ID+  + G +  AL+
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALD 413



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 128/303 (42%), Gaps = 46/303 (15%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  M+  Y+     ++A+ +++ M  +NV  D +T   +  A A   ++  G+ +  ++ 
Sbjct: 223 WTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMS 282

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G   D +V N LI+MY+ CG +  A  +F      D  +W +I+ G       EEA  
Sbjct: 283 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIE 342

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++M                             E P  D V++  +++      + ++ 
Sbjct: 343 MFHRMIR-------------------------VSETP--DEVTFIGVLTACTHAGLVDKG 375

Query: 279 LVLFMNMIDHRVMVDEVV----VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
              F++MI+   +   VV    ++ +L     +T  +A  ++  + +      +  L  A
Sbjct: 376 REFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKIT--EALDTIDQMPMTPNSTIWGTLLAA 433

Query: 335 L-IHMYSSCGEITTAEKLFDAGHNLDLISWNSMI-----SGYLKCGSVEKARALFDAMIE 388
             +H  S  GE+  AE+L      L+L   NSM+     + Y KC   E  R L  A++E
Sbjct: 434 CRVHGNSEIGEL-VAERL------LELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIME 486

Query: 389 KDV 391
           K +
Sbjct: 487 KGI 489


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/801 (35%), Positives = 438/801 (54%), Gaps = 74/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S K+  QI+  +I  GL  +    ++L+   +    +  ++ + ++F  ++    
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK---YGSINEAARVFEPIDDKLD 112

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +++TM++ Y + +  + A+     M  ++V    Y +  L +       +  GK IH  
Sbjct: 113 ALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++   F ++V+    ++NMYA C  +  A K+FD  P  DLVSWN+I+AG+      ++A
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             +  +M +                                         +  S ++  +
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+V  A  +F  M +K +VSW++++  Y QN   E+A+ +F  M++  +    V +
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           +  L ACA+L  ++ G  VH    ++ +   I++ N+LI M                   
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM------------------- 393

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                       Y KC  V+ A  +F+ +  +  VSW+ MI GYAQ+ + SE L+ F EM
Sbjct: 394 ------------YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G++PD  T+VSVI A   L      KWIH  I ++ L  N  + T L+DMY K G +
Sbjct: 442 KSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAI 501

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A ++F    ++ V +WNA+I G+  +GL   +L++F +MKK  V PN+IT++ V+ AC
Sbjct: 502 HMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLVDEG RHF SM Q++ LEP+  HYG MVDLLGRAG +KEA + IE+MP+SP +  
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITV 621

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           +GA+LGACK H + E+GE+  +KL EL PD  G+HVLL+NI+AS  +W  V EVR  M +
Sbjct: 622 YGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEK 681

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           +G+ K PGCS++E    +H F +G  THPQ   I   L+E+  ++K  GY PDT  +  D
Sbjct: 682 KGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILD 740

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++ + +E  L  HSEKLAIAFGL+  SP   I + KNLR+C DCH A K+IS    REI+
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREII 800

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK+G CSC D+W
Sbjct: 801 VRDMQRFHHFKNGICSCGDYW 821


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/567 (44%), Positives = 362/567 (63%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N++I ++   G V  A R+F EM ++++ +W+++ + Y ++  +EE + LF  M++  + 
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIR 222

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            DEV +VSVL+AC  L  ++ G  ++    + G++    L  +L+ MY+           
Sbjct: 223 FDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYA----------- 271

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCG V+ AR LFD M  +DVV+WS MISGY+Q  +  E L
Sbjct: 272 --------------------KCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREAL 311

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF EMQ   I P+E T+VS++S+C  L AL+ GKW+H +I+K  +K+   LGT L+D Y
Sbjct: 312 DLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFY 371

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G V++++EVF     K V SW  LI G A NG   K+LE F  M +  V PN++TF+
Sbjct: 372 AKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFI 431

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLVDEG   F SM ++  +EP  +HYGCMVD+LGRAG+++EA + I++MP+
Sbjct: 432 GVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPI 491

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+   W  LL +CK H + E+GE   ++L+ L+P H G ++LLSNI+AS GRW+D L+V
Sbjct: 492 QPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKV 551

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           RG M  +G+ K PGCS+IE +G+IHEF A D  H Q  EI N +++M K++K  GY P+T
Sbjct: 552 RGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNT 611

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            E   D ++++KE+++  HSEKLAIAFGLI   P   IRI KNLR+C DCH A K +S+ 
Sbjct: 612 AEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKV 671

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F+REIVVRDR RFHHFK GSCSC D+W
Sbjct: 672 FNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 240/486 (49%), Gaps = 72/486 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C++ +   +I + +I T L+     A  L++ +  LLP   M Y+  IF  ++ P+ 
Sbjct: 31  LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLP-TSMDYAVSIFRQIDEPDS 89

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+R +  +  P +AI L+K M  N+V  D +T+P + +  +   ++ EG+ IH  
Sbjct: 90  PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++K GF S  +V NTLI+MYA CG++  AR++FDE    ++ +WNS+ AGY  + N EE 
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209

Query: 217 KFIYNKMPERNI----------------------------------IASN-----SMIVL 237
             ++++M E +I                                  +  N     S++ +
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G V  A RLF +M ++D+V+WSA+IS Y Q     EAL LF  M    +  +E+ +
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+LS+CA L  ++ G  VH    K  ++  + L  AL+  Y+ CG + ++ ++F     
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV 389

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            +++SW  +I G    G  +KA   F  M+EK+V                          
Sbjct: 390 KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNV-------------------------- 423

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGC 476
                 P++ T + V+SAC+H   +D+G+ +   + ++ G++        ++D+  + G 
Sbjct: 424 -----EPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGL 478

Query: 477 VDNALE 482
           ++ A +
Sbjct: 479 IEEAFQ 484



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S++ A ++F  + E D  +++ MI G+       E + LF EM  + ++PDE T   ++ 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            C+ L AL +G+ IHA I K G   +  +  TLI MY   G V+ A  VF    E+ V +
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN++  G+  +G  ++ +++F EM +  +  +E+T V VL AC  +  ++ G    N  +
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGE-WINRYV 251

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA------CKKH 608
           +E  L+ N      +VD+  + G +  A  L + M    DV  W A++        C++ 
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMISGYSQASRCREA 310

Query: 609 GD--HEM 613
            D  HEM
Sbjct: 311 LDLFHEM 317


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/563 (46%), Positives = 376/563 (66%), Gaps = 7/563 (1%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY-EEALVLFMNMI-DHRVMVDEVVVVS 299
            +++ A +LF ++P+ DL  ++ +I  +  +      +L++F ++  D  +  +    V 
Sbjct: 61  ASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF 120

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
             SAC N   V+ G  V   AVK+G+E  + + NALI MY   G +  ++K+F    + D
Sbjct: 121 AFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRD 180

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L SWN++I+ Y+  G++  A+ LFD M E+DVVSWST+I+GY Q   F E L  F +M  
Sbjct: 181 LYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 240

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G +P+E TLVS ++AC++LVALDQGKWIHAYI K  +K+N  L  ++IDMY K G +++
Sbjct: 241 IGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIES 300

Query: 480 ALEVF--HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           A  VF  H  ++K V  WNA+I GFAM+G+ ++++ +F +MK   ++PN++TF+ +L AC
Sbjct: 301 ASRVFFEHKVKQK-VWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNAC 359

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H  +V+EG  +F  M+ ++ + P  +HYGCMVDLL R+G+LKEAE++I SMPM+PDVA 
Sbjct: 360 SHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAI 419

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM-MV 656
           WGALL AC+ + D E G R+GR +  + P+H G HVLLSNI+++ GRW++   +R    +
Sbjct: 420 WGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEI 479

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            R   KIPGCS IE  G  H+FL GD++HPQ  EI + LDEM  KLK  GY P+  E+  
Sbjct: 480 SRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLH 539

Query: 717 DIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
           DID EE KET L  HSEKLAIAFGL+  +   PIRI+KNLR+C DCH A KFIS+ ++R 
Sbjct: 540 DIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRV 599

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I+VRDR R+HHF+ G CSC D+W
Sbjct: 600 IIVRDRTRYHHFEDGICSCKDYW 622



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 149/584 (25%), Positives = 275/584 (47%), Gaps = 112/584 (19%)

Query: 17  SVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL 76
           + +AKP      + S L + +  C+S +Q  Q  +Q+I T LI+   +A++L+K    L 
Sbjct: 5   TTSAKPFHSD--HYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLK----LA 58

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAY-IQRNVPQQAICLYKLMLNNNVGV--DNYT 133
               +SY+ K+F  +  P+ FI+NTM++A+ +  +    ++ +++  L  ++G+  + Y+
Sbjct: 59  ACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFR-SLTQDLGLFPNRYS 117

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           +     A    L V EG+ +  H +K G +++V+V N LI MY   G +  ++K+F  + 
Sbjct: 118 FVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAV 177

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
             DL SWN+++A YV + N+  AK +++ M ER+++                        
Sbjct: 178 DRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVV------------------------ 213

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
                  SWS +I+ Y Q   + EAL  F  M+      +E  +VS L+AC+NL  +  G
Sbjct: 214 -------SWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG 266

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +HA   K  I+    L  ++I MY+ CGEI +A ++F                     
Sbjct: 267 KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVF--------------------- 305

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                    F+  +++ V  W+ MI G+A H   +E +++F +M+   I P++ T ++++
Sbjct: 306 ---------FEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALL 356

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           +AC+H   +++GK                       +Y +L   D A+     T E  + 
Sbjct: 357 NACSHGYMVEEGK-----------------------LYFRLMVSDYAI-----TPE--IE 386

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            +  ++   + +GL  ++ +M S M    + P+   +  +L ACR    ++ G+R    +
Sbjct: 387 HYGCMVDLLSRSGLLKEAEDMISSMP---MAPDVAIWGALLNACRIYKDMERGYR-IGRI 442

Query: 554 IQEHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESMPMSPD 594
           I+   ++PN  H GC V   ++   +G   EA  L E   +S D
Sbjct: 443 IKG--MDPN--HIGCHVLLSNIYSTSGRWNEARILREKNEISRD 482


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/801 (35%), Positives = 436/801 (54%), Gaps = 74/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S K+  QI+  +I  GL  +    ++L+   +    +  ++ + ++F  ++    
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK---YGSINEAARVFEPIDDKLD 112

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +++TM++ Y + +  + A+     M  ++V    Y +  L +       +  GK IH  
Sbjct: 113 ALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++   F ++V+    ++NMYA C  +  A K+FD  P  DLVSWN+I+AG+      ++A
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             +  +M +                                         +  S ++  +
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+V  A  +F  M +K +VSW++++  Y QN   E+A+ +F  M++  +    V +
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           +  L ACA+L  ++ G  VH    ++ +   I++ N+LI M                   
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM------------------- 393

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                       Y KC  V+ A  +F+ +  +  VSW+ MI GYAQ+ + SE L+ F EM
Sbjct: 394 ------------YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G++PD  T+VSVI A   L      KWIH  I ++ L  N  + T L+DMY K G +
Sbjct: 442 KSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAI 501

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A ++F    ++ V +WNA+I G+  +GL   +L++F +MKK  V PN+IT++ V+ AC
Sbjct: 502 HMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLVDEG RHF SM Q++ LEP+  HYG MVDLLGRAG +KEA + IE+MP+SP +  
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITV 621

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           +GA  GACK H + E+GE+  +KL EL PD  G+HVLL+NI+AS  +W  V EVR  M +
Sbjct: 622 YGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEK 681

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           +G+ K PGCS++E    +H F +G  THPQ   I   L+E+  ++K  GY PDT  +  D
Sbjct: 682 KGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILD 740

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++ + +E  L  HSEKLAIAFGL+  SP   I + KNLR+C DCH A K+IS    REI+
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREII 800

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK+G CSC D+W
Sbjct: 801 VRDMQRFHHFKNGICSCGDYW 821


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 422/752 (56%), Gaps = 70/752 (9%)

Query: 86   KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            ++F  +E+ +   +  ++  Y      + A  +++ M    V  +  TY  +  A +   
Sbjct: 300  EVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPA 359

Query: 146  SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            ++  GK +H H+L AG +SD+ V   L+ MYA CG     R++F++    DL++WN+++ 
Sbjct: 360  ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 206  GYVNADNVEEAKFIYNKM------PER--------------------------------- 226
            G     N EEA  IY++M      P +                                 
Sbjct: 420  GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 227  NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +I   N++I ++ R G++ +A  LF +M +KD++SW+A+I    ++ +  EAL +F +M 
Sbjct: 480  DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 287  DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
               +  + V   S+L+AC++   +  G  +H   ++ G+    ++ N L++MYS      
Sbjct: 540  QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYS------ 593

Query: 347  TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                      CGSV+ AR +FD M ++D+V+++ MI GYA H+ 
Sbjct: 594  -------------------------MCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNL 628

Query: 407  FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
              E L LF  +Q  G++PD+ T +++++AC +  +L+  K IH+ + K+G   ++ LG  
Sbjct: 629  GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA 688

Query: 467  LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            L+  Y K G   +AL VF    ++ V SWNA+I G A +G     L++F  MK  G+ P+
Sbjct: 689  LVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPD 748

Query: 527  EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             +TFV +L AC H GL++EG R+F SM ++  + P  +HYGCMVDLLGRAG L E E LI
Sbjct: 749  IVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALI 808

Query: 587  ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            ++MP   +   WGALLGAC+ HG+  + ER     ++L PD+   +V LS+++A+ G WD
Sbjct: 809  KTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWD 868

Query: 647  DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
               ++R +M +RGV K PG S IE    +H F+A DR+HP+  +I   LD++   +K+EG
Sbjct: 869  SAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEG 928

Query: 707  YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
            Y PDT  V  D+D+ EKE  +  HSE+LAIA+GLI+  P  PIRI KNLR+C DCHTA K
Sbjct: 929  YVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATK 988

Query: 767  FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            FI++  DREIV RD +RFHHFK G CSC D+W
Sbjct: 989  FITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/581 (25%), Positives = 285/581 (49%), Gaps = 78/581 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+  Y+Q    ++A+ L + M  + + +   T   L  +     ++  G+ IH   +
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           KA    DV V N ++NMYA CG +  AR++FD+     +VSW  I+ GY +  + E A  
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331

Query: 219 IYNKMPERNIIAS---------------------------------------NSMIVLFG 239
           I+ KM +  ++ +                                        +++ ++ 
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYA 391

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G+  +  ++F+++  +DL++W+ +I    +   +EEA  ++  M    +M +++  V 
Sbjct: 392 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVI 451

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L+AC N T +  G  +H+  VK G    I++QNALI MY+ CG I  A  LF+     D
Sbjct: 452 LLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKD 511

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +ISW +MI G  K G                                 +E L++F +MQ 
Sbjct: 512 IISWTAMIGGLAKSG-------------------------------LGAEALAVFQDMQQ 540

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G++P+  T  S+++AC+   ALD G+ IH  + + GL  ++ +  TL++MY   G V +
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKD 600

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A +VF    ++ + ++NA+I G+A + L  ++L++F  +++ G+ P+++T++ +L AC +
Sbjct: 601 ARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 660

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            G + E  +  +S++ +     ++     +V    + G   +A  + + M M  +V +W 
Sbjct: 661 SGSL-EWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWN 718

Query: 600 ALLGACKKHGDH----EMGERVGRKLVELQPDHDGFHVLLS 636
           A++G C +HG      ++ ER+  K+  ++PD   F  LLS
Sbjct: 719 AIIGGCAQHGRGQDVLQLFERM--KMEGIKPDIVTFVSLLS 757



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/597 (24%), Positives = 274/597 (45%), Gaps = 92/597 (15%)

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
           Y+Q+   +   C Y  ML   + V +               +  G+ +H+H+++     D
Sbjct: 131 YLQQQGARVNSCDYMKMLKRCIEVKD---------------LVAGREVHEHIIQHCTVLD 175

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLV--SWNSILAGYVNADNVEEAKFIYNKM 223
            Y  N LINMY  CG +  AR+++++    +    SWN+++ GYV    +EEA  +  +M
Sbjct: 176 QYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREM 235

Query: 224 PER---------------------------------------NIIASNSMIVLFGRKGNV 244
            +                                        ++  +N ++ ++ + G++
Sbjct: 236 QQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSI 295

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            EA  +F +M  K +VSW+ +I  Y      E A  +F  M    V+ + +  ++VL+A 
Sbjct: 296 HEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAF 355

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           +    +K G +VH+  +  G E  + +  AL+ MY+ CG      ++F+   N DLI+WN
Sbjct: 356 SGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 415

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +MI G  + G+ E+A                                 ++ +MQ  G+ P
Sbjct: 416 TMIGGLAEGGNWEEAS-------------------------------EIYHQMQREGMMP 444

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           ++ T V +++AC +  AL  G+ IH+ + K+G   +  +   LI MY + G + +A  +F
Sbjct: 445 NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLF 504

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +    K + SW A+I G A +GL  ++L +F +M+++G+ PN +T+  +L AC     +D
Sbjct: 505 NKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALD 564

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G R    +I E  L  ++     +V++    G +K+A ++ + M    D+  + A++G 
Sbjct: 565 WGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR-DIVAYNAMIGG 622

Query: 605 CKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
              H   +   ++  +L E  L+PD   +  +L N  A+ G  +   E+  ++++ G
Sbjct: 623 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINML-NACANSGSLEWAKEIHSLVLKDG 678


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 404/708 (57%), Gaps = 70/708 (9%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           DNYT P + +A     ++  G+LIH  V K G D D +V   L++MY  C ++  AR LF
Sbjct: 29  DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLF 88

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----------------------- 226
           D+    DLV+W  ++ GY       E+  ++ KM E                        
Sbjct: 89  DKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMH 148

Query: 227 ----------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                           ++I   +MI ++ + G V  A  +F  M +K+++SWSA+I+ Y 
Sbjct: 149 KARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 208

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            +    +AL LF  M+   ++ D++ + S+L AC++L  ++ G  +H +  K G+     
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGL----- 263

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
                                     +LD     +++  Y KC  +E AR LFD M E+D
Sbjct: 264 --------------------------DLDHFVCAALVDMYGKCREIEDARFLFDKMPERD 297

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           +V+W+ MI GYA+    +E+L LF +M+  G+ PD+  +V+V+ AC  L A+ + + I  
Sbjct: 298 LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 357

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           YI++   +++ ILGT +IDM+ K GCV++A E+F   EEK V SW+A+I  +  +G   K
Sbjct: 358 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 417

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L++F  M +SG+ PN+IT V +L AC H GLV+EG R F+ M +++ +  + KHY C+V
Sbjct: 418 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 477

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA +LIESM +  D   WGA LGAC+ H D  + E+    L+ELQP + G
Sbjct: 478 DLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPG 537

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++LLSNI+A+ GRW+DV + R +M +R + KIPG + IE +   H+F  GD THP+  E
Sbjct: 538 HYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKE 597

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  ML  +  KL+L GY PDT  V  D+D+E K   L+ HSEKLAIAFGLI      PIR
Sbjct: 598 IYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIR 657

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+KNLR+C DCHT  K +S    R I+VRD +RFHHFK G+CSC D+W
Sbjct: 658 IIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 37/331 (11%)

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  +I      D   +  V+ AC +L  ++ G  +H +  K G++    +  AL+ MY  
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           C EI  A  LFD     DL++W  MI GY +CG   ++  LF+ M E+ VV         
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV--------- 128

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
                                 PD+  +V+V+ AC  L A+ + + I  YI++   +++ 
Sbjct: 129 ----------------------PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 166

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           ILGT +IDMY K GCV++A E+F   EEK V SW+A+I  +  +G   K+L++F  M  S
Sbjct: 167 ILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSS 226

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC--MVDLLGRAGML 579
           G+ P++IT   +L AC  +  +  G R  + ++ +  L+ +  H+ C  +VD+ G+   +
Sbjct: 227 GMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGLDLD--HFVCAALVDMYGKCREI 283

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGD 610
           ++A  L + MP   D+ TW  ++G   + G+
Sbjct: 284 EDARFLFDKMP-ERDLVTWTVMIGGYAECGN 313



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/507 (22%), Positives = 228/507 (44%), Gaps = 78/507 (15%)

Query: 37  LQKCQSFK--QFTQILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           ++ C+  K  Q  +++  ++   GL  D F  + L+          +  +   +F  ++ 
Sbjct: 37  IRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF---LFDKMQE 93

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +  M+  Y +     +++ L++ M    V  D      +  A A   ++ + ++I
Sbjct: 94  RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 153

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
            D++ +  F  DV +   +I+MYA CG + +AR++FD     +++SW++++A Y      
Sbjct: 154 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 213

Query: 214 EEAKFIYNKM------PERNIIAS---------------------------------NSM 234
            +A  ++  M      P++  +AS                                  ++
Sbjct: 214 RKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 273

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++G+   + +A  LF +MP++DLV+W+ +I  Y +     E+LVLF  M +  V+ D+
Sbjct: 274 VDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDK 333

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V +V+V+ ACA L  +    ++     +   +  + L  A+I M++ CG + +A ++FD 
Sbjct: 334 VAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 393

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               ++ISW++MI+ Y                             GY  H Q  + L LF
Sbjct: 394 MEEKNVISWSAMIAAY-----------------------------GY--HGQGRKALDLF 422

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMK 473
             M   GI P++ TLVS++ AC+H   +++G ++         ++ +    T ++D+  +
Sbjct: 423 PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGR 482

Query: 474 LGCVDNALEVFHG-TEEKGVSSWNALI 499
            G +D AL++    T EK    W A +
Sbjct: 483 AGRLDEALKLIESMTVEKDEGLWGAFL 509



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 126/241 (52%), Gaps = 15/241 (6%)

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           M+ G+A+   +      F E+   G RPD  TL  VI AC  L  L  G+ IH  + K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L ++  +   L+DMY+K   +++A  +F   +E+ + +W  +I G+A  G A++SL +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M++ GV P+++  V V+ AC  +G + +  R  +  IQ  + + +      M+D+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G ++ A E+ + M    +V +W A++ A   HG        GRK ++L      F ++LS
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDL------FRMMLS 225

Query: 637 N 637
           +
Sbjct: 226 S 226


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/804 (35%), Positives = 426/804 (52%), Gaps = 76/804 (9%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   K      Q+   ++  G+  + +  + L+K         E    F  F+   +
Sbjct: 35  LQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS---N 91

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N M+  Y  R + Q+A  L+ LM    +  D +T+  +  A +    +  G+ I
Sbjct: 92  KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREI 151

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  V++AG  +D  V N LI+MYA CG +  AR++FD     D VSW ++   Y  +   
Sbjct: 152 HVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYG 211

Query: 214 EEAKFIYNKM------PER---------------------------------NIIASNSM 234
           EE+   Y+ M      P R                                 ++  S ++
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTAL 271

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
             ++ + G   +A  +F+ +  +D+++W+ +I  +  +   EEA   F  M++  V  D 
Sbjct: 272 TKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR 331

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
               +VLSACA    +  G  +HA A K G+   +   NALI+MYS              
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYS-------------- 377

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            K GS++ AR +FD M ++DVVSW+T++  YA  DQ  E+ + F
Sbjct: 378 -----------------KAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTF 420

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M   G++ ++ T + V+ AC++ VAL  GK IHA + K GL  +  +   L+ MY K 
Sbjct: 421 KQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKC 480

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G V++A+ VF G   + V +WN LI G   NG   ++L+ +  MK  G+ PN  TFV VL
Sbjct: 481 GSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVL 540

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            ACR   LV+EG R F  M +++ + P  KHY CMVD+L RAG L+EAE++I ++P+ P 
Sbjct: 541 SACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPS 600

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            A WGALL AC+ H + E+GER     ++L+P + G +V LS I+A+ G W DV ++R  
Sbjct: 601 AAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKF 660

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RGV K PG S IE  G +H F+A D++HP+  EI   L+ + K++K  GY PDT  V
Sbjct: 661 MKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFV 720

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+D E KE  +  HSEKLAIA+GLI+  P  PIRI KNLR+C DCHTA KFIS+   R
Sbjct: 721 MHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKR 780

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+ RD HRFHHFK+G CSC D+W
Sbjct: 781 EIIARDAHRFHHFKNGECSCGDYW 804



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/543 (27%), Positives = 250/543 (46%), Gaps = 87/543 (16%)

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
           Y+ R  PQ               VD+Y Y  L Q+      +  GK +H+H+L+ G   +
Sbjct: 18  YLHRKGPQ---------------VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPN 62

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
           VY+ NTL+ +YA CG ++ AR+LFD+     +VSWN +++GY +    +EA  ++  M +
Sbjct: 63  VYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQ 122

Query: 226 RNI---------------------------------------IASNSMIVLFGRKGNVAE 246
             +                                          N++I ++ + G+V +
Sbjct: 123 ERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRD 182

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F  M  +D VSW+ L   Y ++   EE+L  +  M+  RV    +  ++VLSAC +
Sbjct: 183 ARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGS 242

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L  ++ G  +HA  V+      + +  AL  MY                           
Sbjct: 243 LAALEKGKQIHAHIVESEYHSDVRVSTALTKMY--------------------------- 275

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
               +KCG+ + AR +F+ +  +DV++W+TMI G+    Q  E    F  M   G+ PD 
Sbjct: 276 ----MKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR 331

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           AT  +V+SAC     L +GK IHA   K+GL  +   G  LI+MY K G + +A +VF  
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             ++ V SW  L+  +A      +S   F +M + GV  N+IT++ VL AC +   +  G
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG 451

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  ++ + +  L  +      ++ +  + G +++A  + E M M  DV TW  L+G   
Sbjct: 452 -KEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLG 509

Query: 607 KHG 609
           ++G
Sbjct: 510 QNG 512


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 292/844 (34%), Positives = 459/844 (54%), Gaps = 91/844 (10%)

Query: 1   MTLATKLA--HLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL 58
           M L T+L+  + +  ++S + +K +F+      ++  HL KC      T + +  +    
Sbjct: 1   MQLRTRLSLEYCTVLLESCIQSKSLFRG----KLIHQHLLKCLHRTHETNLTNFDVPFEK 56

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
           + D + A   +K +  +  F +M +  K        N  ++N ++RAY      ++AI L
Sbjct: 57  LVDLYIACSELKIARHV--FDKMPHRPK--------NVVLWNLLIRAYAWNGPYEEAIDL 106

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           Y  ML   +  + +T+P + +A +      EG+ IH  + +   +S+VYV+  L++ YA 
Sbjct: 107 YYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAK 166

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGY------------------------------- 207
           CG L  A+++FD+    D+V+WNS+++G+                               
Sbjct: 167 CGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGV 226

Query: 208 ----VNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMP-KKD 258
                  +++   K I+     R    +++    ++ ++G+   +  A R+F  M   K+
Sbjct: 227 LPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKN 286

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMI---DHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            V+WSA++  Y   +   EAL LF  ++   D  +++  V + +V+  CANLT +  GT 
Sbjct: 287 EVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTC 346

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H  A+K                               +G  LDL+  N+++S Y KCG 
Sbjct: 347 LHCYAIK-------------------------------SGFVLDLMVGNTLLSMYAKCGI 375

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           +  A   F+ M  +D VS++ +ISGY Q+    E L +F+EMQ  GI P++ATL SV+ A
Sbjct: 376 INGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPA 435

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C HL  L  G   H Y    G   ++++   LIDMY K G +D A +VF    ++G+ SW
Sbjct: 436 CAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSW 495

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N +II + ++G+  ++L +F  M+  G+ P+++TF+ ++ AC H GLV EG   FN+M Q
Sbjct: 496 NTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQ 555

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           +  + P  +HY CMVDLL RAG+ KE    IE MP+ PDV  WGALL AC+ + + E+GE
Sbjct: 556 DFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGE 615

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
            V +K+ +L P+  G  VLLSN++++ GRWDD  +VR     +G  K PGCS IE +G++
Sbjct: 616 GVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVV 675

Query: 676 HEFLAGD-RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           H FL G  R+HPQ+ +I N LDE+  ++K  GY  ++  V  D+++EEKE  L  HSEKL
Sbjct: 676 HTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKL 735

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           AIAFG++++SP   I + KNLR+C DCHTA KFIS    R+I VRD  RFHHFK G C+C
Sbjct: 736 AIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNC 795

Query: 795 MDFW 798
            DFW
Sbjct: 796 GDFW 799


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/553 (46%), Positives = 356/553 (64%), Gaps = 9/553 (1%)

Query: 255 PKKDLVSWSALISCYEQNEMYEEA-----LVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           P  +   W+ LI  + Q            + +F+ M  H V  D      +L + A+ ++
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +  G SVHA  ++ G+     +Q +LI MYSSCG +  A ++FD     DL SWNS+I+ 
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI---RPDE 426
             + G V+ AR LF  M E++V+SWS MI+GY +  Q+ E L+LF EMQ  G+   RP+E
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+  V++AC  L AL+ GKW HAYI K G+ ++ +LGT LIDMY K G V+ A  VF  
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSN 259

Query: 487 T-EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K V +W+A+I G AM+GLA++ + +FS+M   GV PN +TF+ V  AC H GLV E
Sbjct: 260 LGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSE 319

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +   M +++ + P  +HYGCMVDL GRAG +KEA  +++SMPM PDV  WGALL   
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGS 379

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + HGD E  E   +KL+EL+P + G +VLLSN++A +GRW+DV  VR +M   G+ K+PG
Sbjct: 380 RMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPG 439

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           CS+IE  G++HEF  GD +HP+  +I  ML+E+ ++LK+EGY  +T EV  D+D+E KE 
Sbjct: 440 CSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKEL 499

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLA+A+G +  SP  PIRI+KNLRIC DCH A K IS+ FDREI+VRD +RFH
Sbjct: 500 ALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFH 559

Query: 786 HFKHGSCSCMDFW 798
           HF  G CSC D+W
Sbjct: 560 HFTQGLCSCRDYW 572



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 197/422 (46%), Gaps = 75/422 (17%)

Query: 97  FIFNTMMRAYIQ-RNVP----QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           F++NT++RA++Q R  P       I ++  M  + V  D +T+P L Q+ A    +  G+
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H  +L+ G   D +V  +LI+MY+ CG+L  AR++FDE P  DL SWNSI+     A 
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAG 144

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            V+ A+ ++  MPERN+I+ + MI  + R G   EA  LF+EM    +            
Sbjct: 145 LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGV------------ 192

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
                           + V  +E  +  VL+AC  L  ++ G   HA   K G+   + L
Sbjct: 193 ----------------NDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVL 236

Query: 332 QNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
             ALI MY+ CG +  A  +F + G N D+++W++MISG    G  E+   LF  MI + 
Sbjct: 237 GTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ- 295

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                                         G+RP+  T ++V  AC H   + +GK    
Sbjct: 296 ------------------------------GVRPNAVTFLAVFCACVHGGLVSEGK---D 322

Query: 451 YIRKNGLKINSILGT-----TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAM 504
           Y+R+   +  SI+ T      ++D+Y + G +  A  V      E  V  W AL+ G  M
Sbjct: 323 YLRRM-TEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 381

Query: 505 NG 506
           +G
Sbjct: 382 HG 383



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 47/227 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN---NNVGVDNYTYPLLAQASAL 143
           +FA +   N   ++ M+  Y++    ++A+ L++ M     N+V  + +T   +  A   
Sbjct: 152 LFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG- 210

Query: 144 RLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWN 201
           RL   E GK  H ++ K G   DV +   LI+MYA CG +  A  +F    P  D+++W+
Sbjct: 211 RLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWS 270

Query: 202 SILAGYVNADNVEEAKFIYNKM------------------------------------PE 225
           ++++G       EE   +++KM                                     +
Sbjct: 271 AMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTED 330

Query: 226 RNIIAS----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            +II +      M+ L+GR G + EA  + K MP + D++ W AL+S
Sbjct: 331 YSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLS 377


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/702 (38%), Positives = 401/702 (57%), Gaps = 71/702 (10%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           LL + + LR S+ +G+ +H  +LK+G   + Y+ NTL++MYA CG L+ AR++FD     
Sbjct: 102 LLQECARLR-SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDR 160

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------ 231
           ++VSW +++  +V  +   EA   Y  M      P++    S                  
Sbjct: 161 NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 232 ---------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                           S++ ++ + G++++A  +F ++P+K++V+W+ LI+ Y Q    +
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVD 280

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
            AL L   M    V  +++   S+L  C     ++ G  VH   ++ G    I + NALI
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALI 340

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            M                               Y KCG +++AR LF  +  +DVV+W+ 
Sbjct: 341 TM-------------------------------YCKCGGLKEARKLFGDLPHRDVVTWTA 369

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           M++GYAQ     E + LF  MQ  GI+PD+ T  S +++C+    L +GK IH  +   G
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
             ++  L + L+ MY K G +D+A  VF+   E+ V +W A+I G A +G   ++LE F 
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +MKK G+ P+++TF  VL AC H+GLV+EG +HF SM  ++ ++P  +HY C VDLLGRA
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 549

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L+EAE +I +MP  P  + WGALL AC+ H D E GER    +++L PD DG +V LS
Sbjct: 550 GHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALS 609

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A+ GR++D  +VR +M +R VVK PG S IE +G +H F   D++HP+  EI   L 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           ++ +++K +GY PDT  V  D+D+E+K  TL  HSE+LAI +GL+   P  PIRI+KNLR
Sbjct: 670 KLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLR 729

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C DCHTA+KFIS+   REI+ RD HRFHHF  G CSC DFW
Sbjct: 730 VCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 229/507 (45%), Gaps = 78/507 (15%)

Query: 37  LQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ+C   +S +Q  ++ + ++ +G+  + +  + L+          +   + ++F  +  
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTD---ARRVFDGIRD 159

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +  M+ A++  N   +A   Y+ M       D  T+  L  A      +  G+ +
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  + KAG + +  V  +L+ MYA CGD+S A+ +FD+ P  ++V+W  ++AGY     V
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279

Query: 214 EEAKFIYNKMPE---------------------------------------RNIIASNSM 234
           + A  +  KM +                                       R I   N++
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNAL 339

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I ++ + G + EA +LF ++P +D+V+W+A+++ Y Q   ++EA+ LF  M    +  D+
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           +   S L++C++   ++ G S+H   V  G    + LQ+AL+ MY+ CG +  A  +F+ 
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQ 459

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               ++++W +MI+G   C    + R                            E L  F
Sbjct: 460 MSERNVVAWTAMITG---CAQHGRCR----------------------------EALEYF 488

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMK 473
            +M+  GI+PD+ T  SV+SACTH+  +++G K   +     G+K      +  +D+  +
Sbjct: 489 EQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 548

Query: 474 LGCVDNALEVFHGTE-EKGVSSWNALI 499
            G ++ A  V      + G S W AL+
Sbjct: 549 AGHLEEAENVILTMPFQPGPSVWGALL 575



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 185/391 (47%), Gaps = 49/391 (12%)

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           K D ++ S  +S   +    +EAL +   MI     V   V   +L  CA L  ++ G  
Sbjct: 58  KVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 117

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VHA  +K GI+    L+N L+ MY+ CG +T A ++FD   + +++SW +MI  +     
Sbjct: 118 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAF----- 172

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
                                 ++G    +Q  E    +  M+  G +PD+ T VS+++A
Sbjct: 173 ----------------------VAG----NQNLEAYKCYETMKLAGCKPDKVTFVSLLNA 206

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
            T+   L  G+ +H  I K GL++   +GT+L+ MY K G +  A  +F    EK V +W
Sbjct: 207 FTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTW 266

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
             LI G+A  G  D +LE+  +M+++ V PN+IT+  +L  C     ++ G +    +IQ
Sbjct: 267 TLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQ 326

Query: 556 EHRLEPNSKHYG-------CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
                     YG        ++ +  + G LKEA +L   +P   DV TW A++    + 
Sbjct: 327 S--------GYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTGYAQL 377

Query: 609 GDHEMGERVGRKLVE--LQPDHDGFHVLLSN 637
           G H+    + R++ +  ++PD   F   L++
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTS 408



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 162/356 (45%), Gaps = 49/356 (13%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++S +  IF  L   N   +  ++  Y Q+     A+ L + M    V  +  TY  + Q
Sbjct: 247 DISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQ 306

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                L++  GK +H +++++G+  +++V N LI MY  CG L  ARKLF + P  D+V+
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT 366

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER--------------------------------- 226
           W +++ GY      +EA  ++ +M ++                                 
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 227 ------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 ++   ++++ ++ + G++ +A  +F +M ++++V+W+A+I+   Q+    EAL 
Sbjct: 427 HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE 486

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
            F  M    +  D+V   SVLSAC ++ +V+ G     ++ +  GI+  +   +  + + 
Sbjct: 487 YFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLL 546

Query: 340 SSCGEITTAEKL-----FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
              G +  AE +     F  G ++    W +++S       VE+     + +++ D
Sbjct: 547 GRAGHLEEAENVILTMPFQPGPSV----WGALLSACRIHSDVERGERAAENVLKLD 598



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 19/288 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L   +   +  M+  Y Q     +AI L++ M    +  D  T+     + +   
Sbjct: 354 KLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPA 413

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + EGK IH  ++ AG+  DVY+ + L++MYA CG +  AR +F++    ++V+W +++ 
Sbjct: 414 FLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMIT 473

Query: 206 GYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP-----K 256
           G        EA   + +M ++ I    +   S++      G V E  + F+ M      K
Sbjct: 474 GCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIK 533

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
             +  +S  +    +    EEA  + + M          V  ++LSAC   + V+ G   
Sbjct: 534 PMVEHYSCFVDLLGRAGHLEEAENVILTM---PFQPGPSVWGALLSACRIHSDVERGERA 590

Query: 317 HALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
               +K+  +    Y+ L N    +Y++ G    AEK+       D++
Sbjct: 591 AENVLKLDPDDDGAYVALSN----IYAAAGRYEDAEKVRQVMEKRDVV 634


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/777 (36%), Positives = 434/777 (55%), Gaps = 49/777 (6%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C   K      Q+   ++++G   D F A+ L+        F++   S ++F  +  
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLD---SKRLFDEIPE 220

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +N +   Y+Q +   +A+ L+  M+ + +  + ++   +  A         GK+I
Sbjct: 221 RNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H +++K G+D D +  N L++MYA  GDL+ A  +F++    D+VSWN+++AG V  ++ 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 214 EEAKFIYNKMP------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
           E+A  +  +M             E ++  S  ++ ++ +   + +A   F  +P+KDL++
Sbjct: 341 EQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 400

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+A+IS Y Q     EAL LF+ M    +  ++  + ++L + A L VV     VH L+V
Sbjct: 401 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 460

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K                               +G + D+   NS+I  Y KC  VE A  
Sbjct: 461 K-------------------------------SGFHSDIYVVNSLIDSYGKCSHVEDAER 489

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +F+     D+VS+++MI+ YAQ+ Q  E L LF+EMQ   ++PD     S+++AC +L A
Sbjct: 490 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 549

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
            +QGK +H +I K G  ++   G +L++MY K G +D+A   F    E+G+ SW+A+I G
Sbjct: 550 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 609

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            A +G   ++L++F++M K GV+PN IT V VLGAC H GLV E   +F SM +    +P
Sbjct: 610 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 669

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HY CM+DLLGRAG + EA EL+  MP   + + WGALLGA + H D E+G R    L
Sbjct: 670 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 729

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
             L+P+  G HVLL+NI+AS G+W++V EVR +M    V K PG S IE    ++ FL G
Sbjct: 730 FILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVG 789

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           DR+H +  EI   LDE++  +   GY P       D++Q EKE  L+ HSEKLA+AFGLI
Sbjct: 790 DRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLI 849

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                 PIR+ KNLR+C DCHTA K+I +   REI+VRD +RFHHFK GSCSC D+W
Sbjct: 850 ATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/609 (23%), Positives = 277/609 (45%), Gaps = 91/609 (14%)

Query: 109 RNVPQ-----QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           + VPQ     Q   +  L+   N    + +Y  L        S+  G  IH H+ K+G  
Sbjct: 29  QTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS 88

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            D  + N LIN+Y+ C     ARKL DES   DLVSW+++++GY        A   +++M
Sbjct: 89  DDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 224 P---------------------------------------ERNIIASNSMIVLFGRKGNV 244
                                                   E ++  +N+++V++ +    
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF 208

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            ++ RLF E+P++++VSW+AL SCY Q +   EA+ LF  M+   +  +E  + S+++AC
Sbjct: 209 LDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC 268

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             L     G  +H   +K+G +      NAL+ MY+  G++  A  +F+     D++SWN
Sbjct: 269 TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWN 328

Query: 365 SMISG-------------------------------------------YLKCGSVEKARA 381
           ++I+G                                           Y KC  +E AR 
Sbjct: 329 AVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 388

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
            F+ + EKD+++W+ +ISGY+Q+ +  E LSLF+EM   GI  ++ TL +++ +   L  
Sbjct: 389 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 448

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           +   + +H    K+G   +  +  +LID Y K   V++A  +F       + S+ ++I  
Sbjct: 449 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITA 508

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +A  G  +++L++F EM+   + P+      +L AC ++   ++G +  +  I ++    
Sbjct: 509 YAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG-KQLHVHILKYGFVL 567

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           +      +V++  + G + +A      +     + +W A++G   +HG      ++  ++
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQM 626

Query: 622 VE--LQPDH 628
           ++  + P+H
Sbjct: 627 LKEGVSPNH 635


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/578 (43%), Positives = 364/578 (62%), Gaps = 35/578 (6%)

Query: 225 ERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
           +R ++A     +S+I ++   G+VA A  +F    +  +V W+A+++ Y +N  + E + 
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F  M++  V  DEV +VSV++AC  +   K G  V     + G+     L  AL+ MY+
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          KCG + KAR LFD M  +DVV+WS MISG
Sbjct: 268 -------------------------------KCGEIGKARRLFDGMQSRDVVAWSAMISG 296

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           Y Q DQ  E L LF EMQ   + P++ T+VSV+SAC  L AL+ GKW+H+Y+R+  L + 
Sbjct: 297 YTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLT 356

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
           +ILGT L+D Y K GC+D+A+E F     K   +W ALI G A NG   ++LE+FS M++
Sbjct: 357 TILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRE 416

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
           +G+ P ++TF+GVL AC H  LV+EG RHF+SM +++ ++P  +HYGCMVDLLGRAG++ 
Sbjct: 417 AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVD 476

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           EA + I +MP+ P+   W ALL +C  H +  +GE   ++++ L P H G +VLLSNI+A
Sbjct: 477 EAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYA 536

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           S G+W D   VR  M  RG+ K PGCS+IE +G++ EF A D  HP++ EI   ++EM  
Sbjct: 537 SAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIG 596

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           ++K+ GY P+T +V  ++++ EKE ++  HSEKLAIAFGL+ + P   IR+ KNLR+C D
Sbjct: 597 RIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCAD 656

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CH+A K IS+ +DREIVVRDR+ FHHFK G+CSC D+W
Sbjct: 657 CHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/553 (24%), Positives = 243/553 (43%), Gaps = 97/553 (17%)

Query: 15  KSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           ++ + A P + P ++ +++++  +   S K F  +L             AA+     S  
Sbjct: 22  RAPLRADPSYLPQLHAALIKSG-ELTGSAKSFHSLLEA-----------AAA-----SPT 64

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN--NNVGVDNY 132
           LLP+    +       L +P    +N +MRA++    P+ A+ L+  ML+  +    D +
Sbjct: 65  LLPYAVSLFRLGPRPPLSTP---CYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQH 121

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T     ++ +   ++  G+ +  + +K G  +D +V ++LI+MYA CGD++AAR +FD +
Sbjct: 122 TAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAA 181

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE--------------------------- 225
               +V WN+I+A Y+   +  E   ++  M E                           
Sbjct: 182 EESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGK 241

Query: 226 ------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                       RN     +++ ++ + G + +A RLF  M  +D+V+WSA+IS Y Q +
Sbjct: 242 WVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQAD 301

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
              EAL LF  M   RV  ++V +VSVLSACA L  ++ G  VH+   +  +     L  
Sbjct: 302 QCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGT 361

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+  Y+ CG I  A + F++    +  +W ++I                          
Sbjct: 362 ALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI-------------------------- 395

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-IHAYI 452
                 G A + +  E L LF  M+  GI P + T + V+ AC+H   +++G+    +  
Sbjct: 396 -----KGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMA 450

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMN---GLA 508
           R  G+K        ++D+  + G VD A +       E     W AL+   A++   G+ 
Sbjct: 451 RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510

Query: 509 DKSLEMFSEMKKS 521
           +++L+    +  S
Sbjct: 511 EEALKQIISLNPS 523



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           ++ ++  +       + L LF+EM H       D+ T    + +C+ + ALD G+ + AY
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
             K GL  +  + ++LI MY   G V  A  VF   EE GV  WNA++  +  NG   + 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           +EMF  M + GV  +E+T V V+ AC  +G    G +     + E  L  N K    ++D
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGLARNPKLVTALMD 264

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           +  + G + +A  L + M  S DV  W A++
Sbjct: 265 MYAKCGEIGKARRLFDGM-QSRDVVAWSAMI 294


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/556 (45%), Positives = 372/556 (66%), Gaps = 1/556 (0%)

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +A A  +F  +       +++LI     ++   EAL L+  M+   +  D +    V+ A
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C   +V   G  VH   VK G EC   + ++LIH+Y++  ++  A++LF+     D++SW
Sbjct: 176 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 235

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+MI GY+K   +  AR +FD M+ +DV+SW+TMI+GYA   + +E L+LF +M+  G++
Sbjct: 236 NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVK 295

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P EAT+VS++SAC HL ALD+G  +H YI  N +++NSI+GT L+DMY K G +  A +V
Sbjct: 296 PTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 355

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F+  E K V +WN +I G A++G   ++ ++F EMK++GV PN+ITFV +L AC H G+V
Sbjct: 356 FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMV 415

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           DEG +  + M   + +EP  +HYGC++DLL RAG L+EA ELI +MPM P+ +  GALLG
Sbjct: 416 DEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLG 475

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
            C+ HG+ E+GE VG++L+ LQP H G ++LLSNI+A+  +WDD  +VR +M   G+ K+
Sbjct: 476 GCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKV 535

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDIDQEE 722
           PG S+IE  G++H F+AGD +HP+ N+I   L+E+  +LK   GY+ DT  V  D+++E+
Sbjct: 536 PGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEED 595

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           KE  L  HSEKLAIA+GL+ +     IRI+KNLR+C DCH   K IS+ + REI+VRDR+
Sbjct: 596 KEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRN 655

Query: 783 RFHHFKHGSCSCMDFW 798
           RFHHF+ G CSC+DFW
Sbjct: 656 RFHHFEDGECSCLDFW 671


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/801 (35%), Positives = 424/801 (52%), Gaps = 74/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S K+  QIL  +I  G   +    ++LI        F  ++ + ++F  +E    
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEHLFQTKLISL---FCKFNSITEAARVFEPVEHKLD 107

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +++TM++ Y + +  + A+  Y+ M  + V    Y +  L Q S   L +  G+ IH  
Sbjct: 108 VLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGM 167

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+  GF S+++    ++N+YA C  +  A K+F+  P  DLVSWN+++AGY        A
Sbjct: 168 VITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRA 227

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             +  +M E                                         +  + +M+  
Sbjct: 228 VQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDT 287

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+V  A  +FK M  +++VSW+ +I  Y QN   EEA   F+ M+D  V    V +
Sbjct: 288 YFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSM 347

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           +  L ACANL  ++ G  VH L  +  I   +++ N+LI MYS C  +  A  +F    +
Sbjct: 348 MGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKH 407

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             +++WN+MI GY + G V                               +E L+LF EM
Sbjct: 408 KTVVTWNAMILGYAQNGCV-------------------------------NEALNLFCEM 436

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q H I+PD  TLVSVI+A   L    Q KWIH    +  +  N  + T LID + K G +
Sbjct: 437 QSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAI 496

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A ++F   +E+ V +WNA+I G+  NG   ++L++F+EM+   V PNEITF+ V+ AC
Sbjct: 497 QTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAAC 556

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLV+EG  +F SM + + LEP   HYG MVDLLGRAG L +A + I+ MP+ P +  
Sbjct: 557 SHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITV 616

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
            GA+LGAC+ H + E+GE+   +L +L PD  G+HVLL+N++AS   WD V  VR  M +
Sbjct: 617 LGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEK 676

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           +G+ K PGCS++E    +H F +G   HPQ   I   L+ +  ++K  GY PDT  +  D
Sbjct: 677 KGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HD 735

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++++ KE  L  HSE+LAIAFGL+       I I KNLR+C DCH A K+IS    REI+
Sbjct: 736 VEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREII 795

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK+G CSC D+W
Sbjct: 796 VRDLRRFHHFKNGICSCGDYW 816


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/804 (35%), Positives = 461/804 (57%), Gaps = 79/804 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            + C +     Q+ + +++ G   D    ++L+     L    ++S S   F  ++  N 
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLG---DLSLSSTTFKHIQRKNI 114

Query: 97  FIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           F +N+M+ AY++R   + ++ C+ +L+  + V  D YT+P + +A    LS+ +G+ +H 
Sbjct: 115 FSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHC 171

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            VLK GF+ DVYV  +LI++Y+  G +  A K+F + PV D+ SWN++++G+    NV E
Sbjct: 172 WVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAE 231

Query: 216 AKFIYNKMP---------------------------------------ERNIIASNSMIV 236
           A  + ++M                                        E ++  SN++I 
Sbjct: 232 ALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALIN 291

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G + +A R+F  M  +DLVSW+++I+ YEQN+    AL  F  M+   +  D + 
Sbjct: 292 MYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLT 351

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
           VVS+ S    L+  + G +VH   V+   +E  I + NAL++MY+               
Sbjct: 352 VVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYA--------------- 396

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                           K GS++ ARA+F+ +  +DV+SW+T+I+GYAQ+   SE +  + 
Sbjct: 397 ----------------KLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN 440

Query: 416 EMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+    I P++ T VS++ A +H+ AL QG  IH  + KN L ++  + T LIDMY K 
Sbjct: 441 MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKC 500

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +++A+ +F+   ++    WNA+I    ++G  +K+L++F +M+  GV  + ITFV +L
Sbjct: 501 GRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLL 560

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLVDE    F++M +E+R++PN KHYGCMVDL GRAG L++A  L+ +MP+  D
Sbjct: 561 SACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQAD 620

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + WG LL AC+ HG+ E+G     +L+E+  ++ G++VLLSNI+A+ G+W+  ++VR +
Sbjct: 621 ASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSL 680

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
              RG+ K PG S +    ++  F AG+++HPQ  EI   L  +  K+K  GY PD   V
Sbjct: 681 ARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFV 740

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++++EKE  L  HSE+LAI FG+I+  P +PIRI KNLR+C DCH A K+IS+  +R
Sbjct: 741 LQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITER 800

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFHHFK G CSC D+W
Sbjct: 801 EIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 148/311 (47%), Gaps = 38/311 (12%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V  +C N+ V K    +HAL + +G    + L   L+ +Y++ G+++ +   F      +
Sbjct: 57  VFRSCTNINVAK---QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           + SWNSM+S Y++ G         D+M                  D  +E LSL      
Sbjct: 114 IFSWNSMVSAYVRRGRYR------DSM------------------DCVTELLSL------ 143

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+RPD  T   V+ AC   ++L  G+ +H ++ K G + +  +  +LI +Y + G V+ 
Sbjct: 144 SGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEV 200

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A +VF     + V SWNA+I GF  NG   ++L +   MK   V  + +T   +L  C  
Sbjct: 201 AHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQ 260

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
              V  G    +  + +H LE +      ++++  + G L++A+ + + M +  D+ +W 
Sbjct: 261 SNDV-VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWN 318

Query: 600 ALLGACKKHGD 610
           +++ A +++ D
Sbjct: 319 SIIAAYEQNDD 329


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/742 (37%), Positives = 412/742 (55%), Gaps = 93/742 (12%)

Query: 99  FNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           +N ++ +Y   ++PQ +  C   +  N+   +DN+  P L +A A   S   G+ +H   
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN----- 212
            K GF SDV+V N L+NMY  CG L +AR +FD+ P  D+VSW ++L  YV +       
Sbjct: 115 QKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEAL 174

Query: 213 --VEEAKFIYNKMPERNIIA----------------------------------SNSMIV 236
             V E +F+  K+    +I+                                  + ++I 
Sbjct: 175 RLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALID 234

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G +A A RLF  + K+ +VSW+ +I+   ++   +E    F  M++ ++  +E+ 
Sbjct: 235 MYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEIT 294

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           ++S+++ C  +  +  G   HA  ++ G    + L  ALI MY                 
Sbjct: 295 LLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYG---------------- 338

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
                          KCG V  ARALF+ + +KDV  WS +IS YA      +  +LF+E
Sbjct: 339 ---------------KCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVE 383

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M ++ ++P+  T+VS++S C    ALD GKW HAYI ++GL+++ IL T LI+MY K G 
Sbjct: 384 MLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGD 443

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           V  A  +F+   ++ +  WN ++ GF+M+G   ++LE+FSEM+  GV PN+ITFV +  A
Sbjct: 444 VTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHA 503

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL++                    HYGC+VDLLGRAG L EA  +IE+MPM P+  
Sbjct: 504 CSHSGLME--------------------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTI 543

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WGALL ACK H +  +GE   RK++EL P + G+ VL SNI+AS  RW+DV  VR  M 
Sbjct: 544 IWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMS 603

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
             G+ K PG S IE +G +H F +GD+   Q  ++  M+ EM  KL+  GY P+T  V  
Sbjct: 604 HSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLL 663

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           +ID+EEKE+ L  HSEKLA AFGLI+ +P  PIRI+KNLRIC+DCH A K +S+ + R I
Sbjct: 664 NIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTI 723

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           +VRDR+RFHHF  G CSCM +W
Sbjct: 724 IVRDRNRFHHFSEGYCSCMGYW 745



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 29/213 (13%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT----YP 135
           ++ Y+  +F  ++  +  I++ ++ AY   +   Q   L+  MLNN+V  +N T      
Sbjct: 342 QVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLS 401

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           L A+A AL L    GK  H ++ + G + DV +   LINMYA CGD++ AR LF+E+   
Sbjct: 402 LCAEAGALDL----GKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQR 457

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN--------------------SMI 235
           D+  WN+++AG+      +EA  ++++M    +  ++                     ++
Sbjct: 458 DIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLMEHYGCLV 517

Query: 236 VLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            L GR G++ EA  + + MP + + + W AL++
Sbjct: 518 DLLGRAGHLDEAHNIIENMPMRPNTIIWGALLA 550


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/801 (35%), Positives = 430/801 (53%), Gaps = 74/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S K+  Q +  +I  GL ++    ++L+        F  +  + ++F  +E    
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSL---FCKFGSLHEAARVFQPIEDKID 140

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +++TM++ Y + +    A+  +  M  + V    Y +  L +       + +GK IH  
Sbjct: 141 ELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQ 200

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++  GF S+V+    ++NMYA C  +  A K+FD  P  DLV WN+I++GY      + A
Sbjct: 201 LIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTA 260

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             +  +M E                                         +  S +++ +
Sbjct: 261 LELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDM 320

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+V  A  +F  M  K +VSW+++I  Y QN     A+ +F  M+D +V +  V V
Sbjct: 321 YSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTV 380

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           +  L ACA+L  V+ G  VH L  ++ +   +++ N+LI MYS                 
Sbjct: 381 MGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYS----------------- 423

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                         KC  V+ A  +F+ +  K +VSW+ MI GYAQ+ + +E +  F +M
Sbjct: 424 --------------KCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKM 469

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q   I+PD  T+VSVI A   L  L Q KWIH  + +  L  N  + T L+DMY K G V
Sbjct: 470 QLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAV 529

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A ++F   +E+ V++WNA+I G+  +GL   +LE+F +MKK  + PNE+TF+ VL AC
Sbjct: 530 HTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSAC 589

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLV+EG ++F SM +++ LEP   HYG MVDLLGRA  L EA + I+ MP+ P ++ 
Sbjct: 590 SHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISV 649

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           +GA+LGAC+ H + E+GE+   ++ +L PD  G+HVLL+NI+A+   WD V  VR  M +
Sbjct: 650 FGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEK 709

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           +G+ K PG S++E    +H F +G  +HPQ  +I   L+ +  ++K  GY PDT  V  D
Sbjct: 710 KGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HD 768

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++   KE  L  HSEKLAIAF L+  SP   I + KNLR+C DCH A K+IS    REI+
Sbjct: 769 VEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREII 828

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK G+CSC D+W
Sbjct: 829 VRDMRRFHHFKDGTCSCGDYW 849


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/549 (44%), Positives = 362/549 (65%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F+ +   ++  W+  +  + + +   +A+ LF  + +  +  D      VL AC+ L  
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           V+ G  VH    K+G++  + LQN ++H+Y+ CGEI  A K+FD     D+I+WN MI+ 
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
            +K G  E A  LF  M E++V SW++MI GYAQ  +  E + LF+EM+  G+ P+E T+
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           V+V+ AC  +  L  G+ IH +  ++G + N  +  TLIDMY+K GC+++A  +F   EE
Sbjct: 249 VAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V SW+A+I G A +G A+ +L +F++M  +GV PN +TF+G+L AC HMG+V++G ++
Sbjct: 309 RTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKY 368

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F SM +++ + P  +HYGCMVDL  RAG+L+EA E I +MP++P+   WGALLG CK H 
Sbjct: 369 FASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHK 428

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++ E   R L +L P +DG++V+LSNI+A  GRW+DV  VR +M  RGV K PG S I
Sbjct: 429 NIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSI 488

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
              G+++ F+AGD THPQ  EI    +++ +++KL+GY P+T  V  D+++++KE  L+R
Sbjct: 489 MVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYR 548

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLA+ FGLI  +P   IRIMKNLR+C DCH A K IS    REIVVRDR+RFH FK+
Sbjct: 549 HSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKN 608

Query: 790 GSCSCMDFW 798
           GSCSC D+W
Sbjct: 609 GSCSCGDYW 617



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 234/513 (45%), Gaps = 107/513 (20%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           SY+  IF  L++     +NT +R++ + + P  AI L+  +   ++  D+YT   + +A 
Sbjct: 64  SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC 123

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +  L V  GK++H +V K G  S++++ N ++++YA+CG++  ARK+FD+ P  D+++WN
Sbjct: 124 SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
            ++A  V   + E A  ++ +MPERN+ +  SMI  + + G   EA  LF EM       
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEME------ 237

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
                                    D  ++ +EV VV+VL ACA++  +  G  +H  + 
Sbjct: 238 -------------------------DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSN 272

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           + G E  I + N LI MY  CG +  A ++FD      ++SW++MI+G    G  E A A
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF+ MI                                 G++P+  T + ++ AC+H+  
Sbjct: 333 LFNKMINT-------------------------------GVKPNAVTFIGILHACSHMGM 361

Query: 442 LDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +++G K+  +  R  G+         ++D++ + G +  A E                  
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHE------------------ 403

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEH 557
            F MN                 + PN + +  +LG C   +++ L +E  RH +      
Sbjct: 404 -FIMN---------------MPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLS------ 441

Query: 558 RLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
           +L+P N  +Y  + ++   AG  ++   + + M
Sbjct: 442 KLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLM 474



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 33/269 (12%)

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S   A+ +F  +   +V  W+T +  +A+ D  ++ +SLF  ++   I PD  T   V+ 
Sbjct: 62  SFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLK 121

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY----------------------- 471
           AC+ L+ +  GK +H Y+ K GL+ N  L   ++ +Y                       
Sbjct: 122 ACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVIT 181

Query: 472 --------MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
                   +K+G  + A ++F    E+ V SW ++I G+A  G + +++++F EM+ +G+
Sbjct: 182 WNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PNE+T V VL AC  MG +  G R  +        E N +    ++D+  + G L++A 
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDAC 300

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHE 612
            + ++M     V +W A++     HG  E
Sbjct: 301 RIFDNME-ERTVVSWSAMIAGLAAHGRAE 328


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/632 (40%), Positives = 386/632 (61%), Gaps = 1/632 (0%)

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
           Y  +T+I   +  G + AA  +++  PV  +    +++ G      +++A+ ++ ++PE 
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEP 351

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +++ N++I  + + G V EA  LF +MP ++ +SW+ +I+ Y QN   EEAL L   + 
Sbjct: 352 IVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELH 411

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              ++     + S+  AC+N+  ++ GT VH+LAVK+G +      NALI MY  C  + 
Sbjct: 412 RSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A ++F      D++SWNS ++  ++   +++AR  FD M+ +D VSW+T+IS YA  +Q
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQ 531

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E +  F  M      P+   L  ++  C  L A   G+ IH    K G+    I+   
Sbjct: 532 SNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANA 591

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI MY K GC D+   +F   EE+ + +WN +I G+A +GL  ++++M+  M+ +GV PN
Sbjct: 592 LISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPN 650

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E+TFVG+L AC H GLVDEG + F SM Q++ L P  +HY CMVDLLGR G ++ AE+ I
Sbjct: 651 EVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFI 710

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP+ PD   W ALLGACK H + E+G+R   KL  ++P + G +V+LSNI++S G W 
Sbjct: 711 YDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWG 770

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V EVR +M ++GV+K PGCS  +    +H F+ GD+ H QI EI   L+E+   LK  G
Sbjct: 771 EVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATG 830

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  DID+E+KE++L  HSEKLA+A+ L+      PI+I+KNLRIC DCHT  K
Sbjct: 831 YVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIK 890

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F+S    R+I +RD +RFHHF++GSCSC DFW
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 264/540 (48%), Gaps = 61/540 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N+M+ AY    +P  A  LY  +   N+     T  +L        
Sbjct: 55  EVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM----RTGAILLSGYGRLG 110

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V E + + D +L    + +    N +I+ Y   GD++ AR+LFD  P  D+ SWNS+L 
Sbjct: 111 RVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLT 166

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA----CRLFKE--MP---- 255
           GY ++  + +A+ ++ KMPERN+++   MI  +GR  N  +A    C++ +E  +P    
Sbjct: 167 GYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 256 -----------------------------KKDLVSWSALISCYEQN-EMYEEALVLFMNM 285
                                        ++D+V  +A+++ Y ++  + + A+  F +M
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           I+     +E    ++++A ++   + A  +V+       I C    + ALI   + CG I
Sbjct: 287 IER----NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC----RTALITGLAQCGRI 338

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  LF+      ++SWN++I+GY++ G V +A+ LFD M  ++ +SW+ MI+GYAQ+ 
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E L L  E+   G+ P  ++L S+  AC+++VAL+ G  +H+   K G + NS    
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI MY K   ++ A +VF     K + SWN+ +     N L D++   F  M    ++ 
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSR 514

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++++  ++ A  H    +E    F +M  EH L PNS     ++ + G  G  K  +++
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQQI 573



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 188/390 (48%), Gaps = 21/390 (5%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E  +   ++ I   GR G V EA  +F  MP++D+++W+++IS Y  N M + A  L+ +
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-D 89

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCG 343
            I    M    +++S           + G  + A  V  G +E      NA+I  Y   G
Sbjct: 90  AISGGNMRTGAILLSGYG--------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           +IT A +LFDA  + D+ SWNSM++GY     +  AR LF+ M E+++VSW+ MISGY +
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
            +   +   +F +M   G+ PD++   S +SA   L  LD  + +     K G + + ++
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 464 GTTLIDMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           GT ++++Y +    +D A++ F    E+   +W+ +I   +  G  D ++ ++       
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKS 321

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           +        G L  C   G +D+    F     E   EP    +  ++    + GM+ EA
Sbjct: 322 IACRTALITG-LAQC---GRIDDARILF-----EQIPEPIVVSWNALITGYMQNGMVNEA 372

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHE 612
           +EL + MP    + +W  ++    ++G  E
Sbjct: 373 KELFDKMPFRNTI-SWAGMIAGYAQNGRSE 401



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 53/277 (19%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           L T   KC++ +   Q+ S+M+   +++ ++F A+ +     DLL       +   F  +
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV---QNDLL-----DEARNTFDNM 511

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEG 150
            S +   + T++ AY       +A+  +K M   + +        LL    +L  S   G
Sbjct: 512 LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI-G 570

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + IH   +K G DS++ V N LI+MY  CG  + +R++FD     D+ +WN+I+ GY   
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 211 DNVEEAKFIYNKMPERNIIASN-------------------------------------- 232
               EA  +Y  M    ++ +                                       
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 233 --SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI 266
              M+ L GR G+V  A +   +MP + D V WSAL+
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/632 (40%), Positives = 386/632 (61%), Gaps = 1/632 (0%)

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
           Y  +T+I   +  G + AA  +++  PV  +    +++ G      +++A+ ++ ++PE 
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEP 351

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +++ N++I  + + G V EA  LF +MP ++ +SW+ +I+ Y QN   EEAL L   + 
Sbjct: 352 IVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELH 411

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              ++     + S+  AC+N+  ++ GT VH+LAVK+G +      NALI MY  C  + 
Sbjct: 412 RSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A ++F      D++SWNS ++  ++   +++AR  FD M+ +D VSW+T+IS YA  +Q
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQ 531

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E +  F  M      P+   L  ++  C  L A   G+ IH    K G+    I+   
Sbjct: 532 SNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANA 591

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI MY K GC D+   +F   EE+ + +WN +I G+A +GL  ++++M+  M+ +GV PN
Sbjct: 592 LISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPN 650

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E+TFVG+L AC H GLVDEG + F SM Q++ L P  +HY CMVDLLGR G ++ AE+ I
Sbjct: 651 EVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFI 710

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP+ PD   W ALLGACK H + E+G+R   KL  ++P + G +V+LSNI++S G W 
Sbjct: 711 YDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWG 770

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V EVR +M ++GV+K PGCS  +    +H F+ GD+ H QI EI   L+E+   LK  G
Sbjct: 771 EVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATG 830

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  DID+E+KE++L  HSEKLA+A+ L+      PI+I+KNLRIC DCHT  K
Sbjct: 831 YVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIK 890

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F+S    R+I +RD +RFHHF++GSCSC DFW
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 264/540 (48%), Gaps = 61/540 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N+M+ AY    +P  A  LY  +   N+     T  +L        
Sbjct: 55  EVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM----RTGAILLSGYGRLG 110

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V E + + D +L    + +    N +I+ Y   GD++ AR+LFD  P  D+ SWNS+L 
Sbjct: 111 RVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLT 166

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA----CRLFKE--MP---- 255
           GY ++  + +A+ ++ KMPERN+++   MI  +GR  N  +A    C++ +E  +P    
Sbjct: 167 GYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 256 -----------------------------KKDLVSWSALISCYEQN-EMYEEALVLFMNM 285
                                        ++D+V  +A+++ Y ++  + + A+  F +M
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           I+     +E    ++++A ++   + A  +V+       I C    + ALI   + CG I
Sbjct: 287 IER----NEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC----RTALITGLAQCGRI 338

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  LF+      ++SWN++I+GY++ G V +A+ LFD M  ++ +SW+ MI+GYAQ+ 
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  E L L  E+   G+ P  ++L S+  AC+++VAL+ G  +H+   K G + NS    
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI MY K   ++ A +VF     K + SWN+ +     N L D++   F  M    ++ 
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSR 514

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++++  ++ A  H    +E    F +M  EH L PNS     ++ + G  G  K  +++
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKIGQQI 573



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 188/390 (48%), Gaps = 21/390 (5%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E  +   ++ I   GR G V EA  +F  MP++D+++W+++IS Y  N M + A  L+ +
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-D 89

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCG 343
            I    M    +++S           + G  + A  V  G +E      NA+I  Y   G
Sbjct: 90  AISGGNMRTGAILLSGYG--------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           +IT A +LFDA  + D+ SWNSM++GY     +  AR LF+ M E+++VSW+ MISGY +
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
            +   +   +F +M   G+ PD++   S +SA   L  LD  + +     K G + + ++
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 464 GTTLIDMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           GT ++++Y +    +D A++ F    E+   +W+ +I   +  G  D ++ ++       
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKS 321

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           +        G L  C   G +D+    F     E   EP    +  ++    + GM+ EA
Sbjct: 322 IACRTALITG-LAQC---GRIDDARILF-----EQIPEPIVVSWNALITGYMQNGMVNEA 372

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHE 612
           +EL + MP    + +W  ++    ++G  E
Sbjct: 373 KELFDKMPFRNTI-SWAGMIAGYAQNGRSE 401



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 53/277 (19%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           L T   KC++ +   Q+ S+M+   +++ ++F A+ +     DLL       +   F  +
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV---QNDLL-----DEARNTFDNM 511

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEG 150
            S +   + T++ AY       +A+  +K M   + +        LL    +L  S   G
Sbjct: 512 LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI-G 570

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + IH   +K G DS++ V N LI+MY  CG  + +R++FD     D+ +WN+I+ GY   
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQH 629

Query: 211 DNVEEAKFIYNKMPERNIIASN-------------------------------------- 232
               EA  +Y  M    ++ +                                       
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689

Query: 233 --SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI 266
              M+ L GR G+V  A +   +MP + D V WSAL+
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/693 (38%), Positives = 405/693 (58%), Gaps = 46/693 (6%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           K IH H+L+     D Y  + L+  YA+  C  L  A+ +F++ P  +L  WN+++ GY 
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 209 NADNVEEAKFIY-------NKMPER---------------------------------NI 228
           ++ +  ++  I+       ++ P +                                 ++
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              NS+I  +G  G    A R+F  MP KD+VSW+A+I+ +    + ++AL+LF  M   
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMK 268

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  + + +VSVLSACA    ++ G  + +     G   ++ L NA++ MY  CG I  A
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDA 328

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           + LF+     D++SW +M+ G+ K G+ ++A  +FDAM  K   +W+ +IS Y Q+ +  
Sbjct: 329 KDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPR 388

Query: 409 ETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
             LSLF EMQ     +PDE TL+  + A   L A+D G WIH YI+K+ + +N  L T+L
Sbjct: 389 VALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSL 448

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G ++ A+EVFH  E K V  W+A+I   AM G    +L++FS M ++ + PN 
Sbjct: 449 LDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNA 508

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF  +L AC H GLV+EG + F  M   + + P  +HY C+VD+ GRAG+L++A   IE
Sbjct: 509 VTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIE 568

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP+ P  A WGALLGAC +HG+ E+ E   + L+EL+P + G  VLLSNI+A  G W+ 
Sbjct: 569 KMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEK 628

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  +R +M    V K P CS I+ NGI+HEFL GD +HP   +I + LDE+++K K  GY
Sbjct: 629 VSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGY 688

Query: 708 APDTLEVAFDIDQEEK--ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            PD   +   + +E+   E +L  HSEKLAIAFGLI+ +   PIRI+KN+RIC DCH  A
Sbjct: 689 KPDMSNL-LQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFA 747

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S+ +DR+I++RDR+RFHHF+ G CSC+D+W
Sbjct: 748 KLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/565 (45%), Positives = 361/565 (63%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++     + +A  LF +M   D V+W+ +I  Y QN  Y++AL LF +M    +  D
Sbjct: 162 LIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPD 221

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V++ +VLSAC +   +  G ++H      G     +LQ ALI+MY++CG +  A K++D
Sbjct: 222 SVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYD 281

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              +  LI   +M+SGY K G V+ AR +FD MIE+D+V WS MISGYA+ DQ  E L L
Sbjct: 282 GLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKL 341

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F EM      PD+ T++SVISAC+H+ AL Q  WIH Y+ ++G      +   LIDMY K
Sbjct: 342 FDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAK 401

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +  A EVF     K V SW+++I  FAM+G AD ++++F  MK+  + PN +TF+GV
Sbjct: 402 CGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGV 461

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLV+EG + F+SMI EH + P  +HYGCMVDL  RA  L++A ELIE+MP +P
Sbjct: 462 LYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAP 521

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           +V  WG+L+ AC+ HG+ E+GE   ++L+EL+PDHDG  V+LSNI+A + RW+DV  +R 
Sbjct: 522 NVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRK 581

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M  +G+ K    S IE N  +H F+  DR H Q +EI   LDE+  KLKL GY P T  
Sbjct: 582 SMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSG 641

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           +  D+++E+K+  +  HSEKLA+ +GLI+    + IRI+KNLRIC DCH+  K +S+ + 
Sbjct: 642 ILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQ 701

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
            EIVVRDR RFHH   G CSC D+W
Sbjct: 702 IEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 209/475 (44%), Gaps = 67/475 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + K  +F    +I       G + D F  + LI         ++      +F  +  P+ 
Sbjct: 131 VSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARL---LFDKMCHPDA 187

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N ++  Y Q      A+ L++ M ++++  D+     +  A     ++  G+ IH+ 
Sbjct: 188 VAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEF 247

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V   G+  D ++   LINMYA CG +  ARK                             
Sbjct: 248 VKDNGYAIDSHLQTALINMYANCGAMDLARK----------------------------- 278

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
             IY+ +  +++I S +M+  + + G V +A  +F +M ++DLV WSA+IS Y +++  +
Sbjct: 279 --IYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQ 336

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M+  R + D++ ++SV+SAC+++  +     +H    + G    +++ NALI
Sbjct: 337 EALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALI 396

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG +  A ++F+     ++ISW+SMI                             
Sbjct: 397 DMYAKCGNLVKAREVFENMPRKNVISWSSMI----------------------------- 427

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKN 455
             + +A H      + LF  M+   I P+  T + V+ AC H   +++G K   + I ++
Sbjct: 428 --NAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEH 485

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLAD 509
           G+         ++D+Y +   +  A+E+         V  W +L+    ++G A+
Sbjct: 486 GISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAE 540



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 188/416 (45%), Gaps = 71/416 (17%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRVMVDEVVVVSVLSACANLT 308
           +F ++P       + L+    ++   E+ + L+ N+   +   +D     S+L A + ++
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
               G  +H LA K+G      +Q  LI MY+SC  I  A  LFD   + D ++WN +I 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           GY                                Q+  + + L LF +M+   ++PD   
Sbjct: 196 GY-------------------------------CQNGHYDDALRLFEDMRSSDMKPDSVI 224

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           L +V+SAC H   L  G+ IH +++ NG  I+S L T LI+MY   G +D A +++ G  
Sbjct: 225 LCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLS 284

Query: 489 -------------------------------EKGVSSWNALIIGFAMNGLADKSLEMFSE 517
                                          E+ +  W+A+I G+A +    ++L++F E
Sbjct: 285 SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDE 344

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           M +    P++IT + V+ AC H+G + +    H + +       L  N+     ++D+  
Sbjct: 345 MLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNN----ALIDMYA 400

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           + G L +A E+ E+MP   +V +W +++ A   HG+ +   ++ R++ E+  + +G
Sbjct: 401 KCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/550 (44%), Positives = 348/550 (63%), Gaps = 1/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F    + D   W+ +I  +  ++  E +L+L+  M+      +     S+L AC+NL+ 
Sbjct: 71  VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +  T +HA   K+G E  +   N+LI+ Y+  G    A  LFD     D +SWNS+I G
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y+K G ++ A  LF  M EK+ +SW+TMISGY Q D   E L LF EMQ+  + PD  +L
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            + +SAC  L AL+QGKWIH+Y+ K  ++++S+LG  LIDMY K G ++ ALEVF   ++
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K V +W ALI G+A +G   +++  F EM+K G+ PN ITF  VL AC + GLV+EG   
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F SM +++ L+P  +HYGC+VDLLGRAG+L EA+  I+ MP+ P+   WGALL AC+ H 
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+GE +G  L+ + P H G +V  +NIHA   +WD   E R +M  +GV K+PGCS I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD-IDQEEKETTLF 728
              G  HEFLAGDR+HP+I +I +    M +KL+  GY P+  E+  D +D +E+E  + 
Sbjct: 491 SLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVH 550

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
           +HSEKLAI +GLI   P   IRIMKNLR+C DCH   K IS+ + R+IV+RDR RFHHF+
Sbjct: 551 QHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFR 610

Query: 789 HGSCSCMDFW 798
            G CSC D+W
Sbjct: 611 DGKCSCGDYW 620



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 242/509 (47%), Gaps = 109/509 (21%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF-----STDLLPFIEMSYSFKIFAFL 91
           LQ+C   ++  QI ++M+ TGL+ D++A ++ + F     S+D LP+ ++     +F   
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQI-----VFDGF 75

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           + P+ F++N M+R +   + P++++ LY+ ML ++   + YT+P L +A +  LS FE  
Sbjct: 76  DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS-NLSAFEET 134

Query: 152 L-IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
             IH  + K G+++DVY  N+LIN YAV G+   A  LFD  P  D VSWNS++ GYV A
Sbjct: 135 TQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKA 194

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             ++ A  ++ KM E+N I+  +MI                               S Y 
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMI-------------------------------SGYV 223

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           Q +M +EAL LF  M +  V  D V + + LSACA L  ++ G  +H+   K  I     
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L   LI MY+ CGE+  A ++F       + +W ++I                       
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALI----------------------- 320

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-H 449
                   SGYA H    E +S FMEMQ  GI+P+  T  +V++AC++   +++GK I +
Sbjct: 321 --------SGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           +  R   LK         I+ Y   GC+ +                   ++G A  GL D
Sbjct: 373 SMERDYNLK-------PTIEHY---GCIVD-------------------LLGRA--GLLD 401

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           ++     EM    + PN + +  +L ACR
Sbjct: 402 EAKRFIQEMP---LKPNAVIWGALLKACR 427


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/568 (45%), Positives = 375/568 (66%), Gaps = 16/568 (2%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACA 305
           A ++F+ M + +  S++ LI    ++    +AL++F+ M+ D  V  +     SV  AC 
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF------------- 352
               ++ G  VH LAVK G++    + + ++ MY SCG +  A +LF             
Sbjct: 124 RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIR 183

Query: 353 DAGHNLD--LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           D    +D  ++ WN MI GY++ G +E AR LFD M ++ VVSW+ MI+GYAQ   F E 
Sbjct: 184 DKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + +F EMQ   + P+  TLVSV+ A + L AL+ GKW+H Y  +N + ++ +LG+ LIDM
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDM 303

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G ++ AL+VF G  ++ V +W+ +I G AM+G A  +L+ F +M+++GV P+++T+
Sbjct: 304 YAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTY 363

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           +G+L AC H GLV+EG   F+ M++   LEP  +HYGCMVDLLGRAG+L+E+EELI +MP
Sbjct: 364 IGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP 423

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           + PD   W ALLGACK HG+ EMG+RV   L+EL P   G +V LSNI+AS G W+ V +
Sbjct: 424 IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAK 483

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR MM    V K PGCS IE +G+IHEFL  D +HP+  +I +ML EM++ L L GY P+
Sbjct: 484 VRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPN 543

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T +V  ++D+E+KE++L  HSEK+AIAFGLI+  P  P+RI KNLRIC DCH++ K IS+
Sbjct: 544 TTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISK 603

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            + R+I+VRDR RFHHF +GSCSCMD+W
Sbjct: 604 IYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 210/477 (44%), Gaps = 92/477 (19%)

Query: 40  CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF 99
           C++ +   Q+ +QMI T  I D  AA+ L++FS  +    ++ Y+ KIF  +  PN F +
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSA-VSDHRDLDYARKIFRSMHRPNCFSY 79

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           NT++RA  + N P  A+ ++  M+ + +V  + +T+P + +A      + EG+ +H   +
Sbjct: 80  NTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAV 139

Query: 159 KAGFDSDVYVNNTLINMYAVCG-------------------------------------- 180
           K G DSD +V + ++ MY  CG                                      
Sbjct: 140 KFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVM 199

Query: 181 --------DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE- 225
                   +L  AR LFDE P   +VSWN ++AGY  + + +EA  ++ +M      P  
Sbjct: 200 IDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNY 259

Query: 226 ---------------------------RNIIA-----SNSMIVLFGRKGNVAEACRLFKE 253
                                      RN I       +++I ++ + G++ +A ++F+ 
Sbjct: 260 VTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEG 319

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +PK+++V+WS +I+    +   ++ L  F +M    VM  +V  + +LSAC++  +V  G
Sbjct: 320 LPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEG 379

Query: 314 TSVHALAVKI-GIECYINLQNALIHMYSSCG-EITTAEKLFDAGHNLDLISWNSMISGYL 371
                  V++ G+E  I     ++ +    G    + E + +     D + W +++    
Sbjct: 380 RWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACK 439

Query: 372 KCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
             G+VE  + + + ++E    D  S+  + + YA    +     + + M+   +R D
Sbjct: 440 MHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 496



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 157/343 (45%), Gaps = 36/343 (10%)

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF-----DAMIEKDVVSWSTMI 398
           ++  A K+F + H  +  S+N++I    +      A  +F     D  +E +  ++ ++ 
Sbjct: 60  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 119

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS---ACTHLVALDQGKWIHAYI--- 452
               + ++  E   +       G+  DE  + +V+    +C  +    +  +   ++   
Sbjct: 120 KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 179

Query: 453 -----RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
                +K  +  + +L   +ID Y+++G ++ A  +F    ++ V SWN +I G+A +G 
Sbjct: 180 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGH 239

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             +++E+F EM+ + V PN +T V VL A   +G ++ G +  +     + +  +     
Sbjct: 240 FKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG-KWVHLYAVRNNIGVDDVLGS 298

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG------DH-EMGERVGRK 620
            ++D+  + G +++A ++ E +P   +V TW  ++     HG      DH E  ER G  
Sbjct: 299 ALIDMYAKCGSIEKALQVFEGLPKR-NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAG-- 355

Query: 621 LVELQPDHDGFHVLLSNI-HA---SKGRW--DDVLEVRGMMVR 657
              + P    +  LLS   HA   ++GRW  D ++ V G+  R
Sbjct: 356 ---VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPR 395


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/702 (38%), Positives = 403/702 (57%), Gaps = 47/702 (6%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F +N M+  Y++      A  L+ LM   +V     ++  L    A    V E + + D+
Sbjct: 112 FSWNVMLTGYVRNCRLGDARRLFDLMPEKDV----VSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           +     + +    N L+  Y   G +  A  LF+     DL+SWN ++ G+V    + +A
Sbjct: 168 MP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           +++++KMP R+ I+ N+MI  + + G +++A RLF E P +D+ +W+A++S Y QN M +
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLD 283

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA   F  M +     +EV                                     NA+I
Sbjct: 284 EAKTFFDEMPEK----NEVSY-----------------------------------NAMI 304

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
             Y    ++  A +LF++    ++ SWN+MI+GY + G + +AR  FD M ++D VSW+ 
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I+GYAQ   + E L++F+E++  G   + AT    +S C  + AL+ GK IH    K G
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                 +G  L+ MY K G +D A + F G EEK V SWN ++ G+A +G   ++L +F 
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            MK +GV P+EIT VGVL AC H GL+D G  +F SM +++ + P SKHY CM+DLLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L+EA++LI +MP  P  A+WGALLGA + HG+ E+GE+    + +++P + G +VLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A+ GRW D  ++R  M   GV K+PG S +E    IH F  GD +HP+   I   L+
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+  K++ EGY   T  V  D+++EEKE  L  HSEKLA+AFG++TI    PIR+MKNLR
Sbjct: 665 ELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLR 724

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C DCH+A K IS+   R I++RD HRFHHF  G CSC D+W
Sbjct: 725 VCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 216/452 (47%), Gaps = 28/452 (6%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D D+   N  I+ +   G   +A  +F+  P    VS+N++++GY+       A+ ++++
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MPER++ + N M+  + R   + +A RLF  MP+KD+VSW++L+S Y QN   +EA  +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            NM +     + +    +L+A  +   ++       L  +   +  +   N L+  +   
Sbjct: 166 DNMPEK----NSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRK 217

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
            ++  A  LFD     D ISWN+MISGY + G + +AR LFD    +DV +W+ M+SGY 
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYV 277

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q+    E  + F EM       +E +  ++I+       +D  + +   +       N  
Sbjct: 278 QNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NIS 329

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
              T+I  Y ++G +  A + F    ++   SW A+I G+A +G  +++L MF E+K+ G
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD-----LLGRAG 577
            + N  TF   L  C  +  ++ G +     ++           GC V      +  + G
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKM------GYGTGCFVGNALLAMYFKCG 443

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + EA +  E +    DV +W  +L    +HG
Sbjct: 444 SIDEANDTFEGIE-EKDVVSWNTMLAGYARHG 474



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 37/305 (12%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NA+I  Y    +   A  LFD     DL SWN M++GY++   +  AR LFD M EKDVV
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQH--------------HGIRPDEATLVSVISACTH 438
           SW++++SGYAQ+    E   +F  M                H  R +EA L+    +   
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 439 LVALDQGKWIHAYIRKNGLK-----------INSILGTTLIDMYMKLGCVDNALEVFHGT 487
           L++ +    +  ++RK  L             ++I   T+I  Y + G +  A  +F  +
Sbjct: 204 LISWNC--LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES 261

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +W A++ G+  NG+ D++   F EM +     NE+++  ++        +D   
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             F SM        N   +  M+   G+ G + +A +  + MP   D  +W A++    +
Sbjct: 318 ELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWAAIIAGYAQ 371

Query: 608 HGDHE 612
            G +E
Sbjct: 372 SGHYE 376



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 44/250 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + K F  +   +   +  ++  Y Q    ++A+ ++  +  +   ++  T+     
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   ++  GK IH   +K G+ +  +V N L+ MY  CG +  A   F+     D+VS
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 200 WNSILAGY--------------------VNADNV----------------EEAKFIYNKM 223
           WN++LAGY                    V  D +                   ++ Y+  
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 224 PERNIIASNS----MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
            +  +I ++     MI L GR G + EA  L + MP +    SW AL+     +   E+ 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 276 EEALVLFMNM 285
           E+A  +   M
Sbjct: 583 EKAAEMVFKM 592


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/702 (38%), Positives = 403/702 (57%), Gaps = 47/702 (6%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F +N M+  Y++      A  L+ LM   +V     ++  L    A    V E + + D+
Sbjct: 112 FSWNVMLTGYVRNCRLGDARRLFDLMPEKDV----VSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           +     + +    N L+  Y   G +  A  LF+     DL+SWN ++ G+V    + +A
Sbjct: 168 MP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           +++++KMP R+ I+ N+MI  + + G +++A RLF E P +D+ +W+A++S Y QN M +
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLD 283

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA   F  M +     +EV                                     NA+I
Sbjct: 284 EAKTFFDEMPEK----NEVSY-----------------------------------NAMI 304

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
             Y    ++  A +LF++    ++ SWN+MI+GY + G + +AR  FD M ++D VSW+ 
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I+GYAQ   + E L++F+E++  G   + AT    +S C  + AL+ GK IH    K G
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
                 +G  L+ MY K G +D A + F G EEK V SWN ++ G+A +G   ++L +F 
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            MK +GV P+EIT VGVL AC H GL+D G  +F SM +++ + P SKHY CM+DLLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L+EA++LI +MP  P  A+WGALLGA + HG+ E+GE+    + +++P + G +VLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A+ GRW D  ++R  M   GV K+PG S +E    IH F  GD +HP+   I   L+
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+  K++ EGY   T  V  D+++EEKE  L  HSEKLA+AFG++TI    PIR+MKNLR
Sbjct: 665 ELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLR 724

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C DCH+A K IS+   R I++RD HRFHHF  G CSC D+W
Sbjct: 725 VCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 216/452 (47%), Gaps = 28/452 (6%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D D+   N  I+ +   G   +A  +F+  P    VS+N++++GY+       A+ ++++
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MPER++ + N M+  + R   + +A RLF  MP+KD+VSW++L+S Y QN   +EA  +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            NM +     + +    +L+A  +   ++       L  +   +  +   N L+  +   
Sbjct: 166 DNMPEK----NSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRK 217

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
            ++  A  LFD     D ISWN+MISGY + G + +AR LFD    +DV +W+ M+SGY 
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYV 277

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q+    E  + F EM       +E +  ++I+       +D  + +   +       N  
Sbjct: 278 QNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NIS 329

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
              T+I  Y ++G +  A + F    ++   SW A+I G+A +G  +++L MF E+K+ G
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD-----LLGRAG 577
            + N  TF   L  C  +  ++ G +     ++           GC V      +  + G
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKM------GYGTGCFVGNALLAMYFKCG 443

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + EA +  E +    DV +W  +L    +HG
Sbjct: 444 SIDEANDTFEGIE-EKDVVSWNTMLAGYARHG 474



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 123/261 (47%), Gaps = 57/261 (21%)

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           + GL+D G  +F  M +E+ + P SKHY CM+DLLGR   L+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           GALLGA + HG+ E+GE+  +   ++ P + G          SK R  DV          
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------SKMR--DV---------- 857

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
           GV K+PG S  E    IH F  G     +   I   L+E              L++    
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEE--------------LDLKMRE 902

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN-LRICNDCHTAAKFISRAFDREIV 777
            +EEKE TL   SE LA A G++TI    P R+MK  + +C DC +A K +S+   R I 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           +RD HRF+      CSC ++W
Sbjct: 963 LRDSHRFN---ESICSCGEYW 980



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 37/305 (12%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NA+I  Y    +   A  LFD     DL SWN M++GY++   +  AR LFD M EKDVV
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQH--------------HGIRPDEATLVSVISACTH 438
           SW++++SGYAQ+    E   +F  M                H  R +EA L+    +   
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 439 LVALDQGKWIHAYIRKNGLK-----------INSILGTTLIDMYMKLGCVDNALEVFHGT 487
           L++ +    +  ++RK  L             ++I   T+I  Y + G +  A  +F  +
Sbjct: 204 LISWNC--LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES 261

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +W A++ G+  NG+ D++   F EM +     NE+++  ++        +D   
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             F SM        N   +  M+   G+ G + +A +  + MP   D  +W A++    +
Sbjct: 318 ELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWAAIIAGYAQ 371

Query: 608 HGDHE 612
            G +E
Sbjct: 372 SGHYE 376



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 44/250 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + K F  +   +   +  ++  Y Q    ++A+ ++  +  +   ++  T+     
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   ++  GK IH   +K G+ +  +V N L+ MY  CG +  A   F+     D+VS
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 200 WNSILAGY--------------------VNADNV----------------EEAKFIYNKM 223
           WN++LAGY                    V  D +                   ++ Y+  
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 224 PERNIIASNS----MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
            +  +I ++     MI L GR G + EA  L + MP +    SW AL+     +   E+ 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 276 EEALVLFMNM 285
           E+A  +   M
Sbjct: 583 EKAAEMVFKM 592


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/559 (44%), Positives = 364/559 (65%), Gaps = 3/559 (0%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI---DHRVMVDEVVVVS 299
           N+  A +L        L + +++I  Y ++    ++   + N++   ++ +  D      
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           ++  CA L     G  VH   +K G E   ++Q  L+ MY+  G +++   +FD     D
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L++  +M++   KCG ++ AR +FD M E+D V+W+ MI+GYAQ  +  E L +F  MQ 
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G++ +E ++V V+SACTHL  LD G+W+HAY+ +  +++   LGT L+DMY K G VD 
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDR 297

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A++VF G +E+ V +W++ I G AMNG  ++SL++F++MK+ GV PN ITF+ VL  C  
Sbjct: 298 AMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSV 357

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +GLV+EG +HF+SM   + + P  +HYG MVD+ GRAG LKEA   I SMPM P V  W 
Sbjct: 358 VGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWS 417

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC+ + + E+GE   RK+VEL+  +DG +VLLSNI+A    W+ V  +R  M  +G
Sbjct: 418 ALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKG 477

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           V K+PGCS+IE +G +HEF+ GD++HP+ +EI+  L+E++K L+L GY  +T  V FDI+
Sbjct: 478 VKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIE 537

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEKE  L +HSEK+AIAFGLI++    PIR++ NLRIC DCH  AK IS+ F+REI+VR
Sbjct: 538 EEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVR 597

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR+RFHHFK G CSC D+W
Sbjct: 598 DRNRFHHFKDGECSCKDYW 616



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 224/485 (46%), Gaps = 86/485 (17%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIAD-----TFAASRLIKFSTDLLPFIE 80
           PTI+L      L  C + K+  QI +Q+++ G++ +      F A+  +  +T+L     
Sbjct: 11  PTISL------LNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNL----- 59

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML---NNNVGVDNYTYPLL 137
             Y+ K+     +P  F  N+M+RAY + + P ++   Y  +L   NNN+  DNYT+  L
Sbjct: 60  -DYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFL 118

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +  A   +   G  +H  V+K GF+ D +V   L+ MYA  G LS+   +FD +   DL
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDL 178

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           V+  ++L       +++ A+ ++++MPER+ +  N+MI  + + G   EA  +F  M  +
Sbjct: 179 VTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQME 238

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
                                           V ++EV +V VLSAC +L V+  G  VH
Sbjct: 239 G-------------------------------VKLNEVSMVLVLSACTHLQVLDHGRWVH 267

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           A   +  +   + L  AL+ MY+ CG +  A ++F      ++ +W+S I G        
Sbjct: 268 AYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGG-------- 319

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
                               ++G+ +     E+L LF +M+  G++P+  T +SV+  C+
Sbjct: 320 ------------------LAMNGFGE-----ESLDLFNDMKREGVQPNGITFISVLKGCS 356

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEEKG-VSS 494
            +  +++G+  H    +N   I   L     ++DMY + G +  AL   +    +  V +
Sbjct: 357 VVGLVEEGR-KHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGA 415

Query: 495 WNALI 499
           W+AL+
Sbjct: 416 WSALL 420


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/613 (42%), Positives = 373/613 (60%), Gaps = 40/613 (6%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
           F+  K+  R    S++  +L+ R         +F E+P  D   W+ +I  Y  ++  +E
Sbjct: 36  FVLAKLLRRLFACSSANDLLYARS--------VFDEIPSPDTFIWNTMIRAYLNSQNPQE 87

Query: 278 ALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           ++ LF  M     + +D   +  V+ AC  L     G  +H   +KIG+   + ++ ALI
Sbjct: 88  SMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALI 147

Query: 337 HMYSS-------------------------------CGEITTAEKLFDAGHNLDLISWNS 365
            MY+                                 GEI  A  LFD     DL+SWN+
Sbjct: 148 EMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNT 207

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           MI G+   G V  A+ LFD   E+D++SWS+MI+ YA+  Q +E L LF EMQ   + PD
Sbjct: 208 MIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPD 267

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           + T+VSV+SAC  + AL  GK IH  I +N ++I+  LGT+L+DMY K G +DN+L VF+
Sbjct: 268 KVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFN 327

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
           G   + V +W+A+I+G A +G  + +L+ FS+M    + PN++TF+GVL AC H+GLVDE
Sbjct: 328 GMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDE 387

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F SM + + + P  +HYGC+VD+LGRAG L+EA ELI+SMP +PD   W ALLGAC
Sbjct: 388 GWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGAC 447

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + + + E+ E     L+EL+P  DG +VLLSNI++    WD V+ VR MM    + K+PG
Sbjct: 448 RIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPG 507

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S IE +  +HEF+AGD++HP+  +I  ML E+  +LK  GYAP T  V  D D++EKE 
Sbjct: 508 SSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKEN 567

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLAIAFGL++ +P + IRI+KNLR+C+DCH A K ISR + R I+VRDR+RFH
Sbjct: 568 ALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFH 627

Query: 786 HFKHGSCSCMDFW 798
           HF +GSCSC D+W
Sbjct: 628 HFVNGSCSCKDYW 640



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/503 (29%), Positives = 243/503 (48%), Gaps = 65/503 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ      Q  QI + +I T L  + F  ++L++         ++ Y+  +F  + SP+ 
Sbjct: 10  LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 69

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           FI+NTM+RAY+    PQ+++ L+  M +   + +D+Y+  L+ QA         G+ +H 
Sbjct: 70  FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            VLK G  SD++V   LI MYA  GD+  AR + DE    DLV +N +LA YV    +  
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A  ++++MPER++++ N+MI      G+V  A +LF    ++DL+SWS++I+ Y +    
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            EAL LF  M    V+ D+V +VSVLSAC ++  +  G  +H    +  IE  + L  +L
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSL 309

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+ CG+I  + ++F+  +N D+ +W++MI G    G  E A   F  MI +D     
Sbjct: 310 VDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISED----- 364

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                                     I+P++ T + V+SAC+H+  +D+G W +      
Sbjct: 365 --------------------------IKPNDVTFIGVLSACSHIGLVDEG-WTYFTSMSK 397

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
              +     +  I+ Y   GCV + L                        G A +  E  
Sbjct: 398 VYDV-----SPKIEHY---GCVVDIL------------------------GRAGRLQEAM 425

Query: 516 SEMKKSGVTPNEITFVGVLGACR 538
             +K     P+ I +  +LGACR
Sbjct: 426 ELIKSMPFAPDAIVWRALLGACR 448


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/796 (35%), Positives = 452/796 (56%), Gaps = 49/796 (6%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYS-FKIFAFLESPNGFIFNTMMRAY 106
            Q+ S++I  G   DTF  + LI    D+    +   S  K+F  +   N   +N+++ A 
Sbjct: 297  QVHSKLIACGFKGDTFVGNALI----DMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 352

Query: 107  IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
             Q      A+ L+  M  +    + +    +  ASA    + +G+ +H H+++   +SD+
Sbjct: 353  AQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDI 412

Query: 167  YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
             + + L++MY+ CG +  A ++F      + VS+N++LAGYV     EEA  +Y+ M   
Sbjct: 413  ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSE 472

Query: 224  ----PE---------------------------------RNIIASNSMIVLFGRKGNVAE 246
                P+                                 +NII    ++ ++   G +  
Sbjct: 473  DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNY 532

Query: 247  ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
            A  +F  M +++  SW+++I  Y+QN   +EAL LF  M  + +  D   + S+LS+C +
Sbjct: 533  AKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVS 592

Query: 307  LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
            L+  + G  +H   V+  +E    LQ  L+ MY+ CG +  A K++D     D+I  N M
Sbjct: 593  LSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVM 652

Query: 367  ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
            +S ++  G    A+ LFD M +++   W+++++GYA      E+ + F+EM    I  D 
Sbjct: 653  VSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDV 712

Query: 427  ATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T+V++++ C+ L AL+ G  +H+ I K G +  + +L T L+DMY K G +  A  VF 
Sbjct: 713  LTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFD 772

Query: 486  GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
                K + SWNA+I G++ +G + ++L ++ EM K G+ PNE+TF+ +L AC H GLV+E
Sbjct: 773  NMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEE 832

Query: 546  GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
            G R F SM +++ +E  ++HY CMVDLLGRAG L++A+E +E MP+ P+V+TWGALLGAC
Sbjct: 833  GLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGAC 892

Query: 606  KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
            + H D +MG    ++L EL P + G +V++SNI+A+ GRW +V ++R MM  +GV K PG
Sbjct: 893  RVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPG 952

Query: 666  CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT---LEVAFDIDQEE 722
             S IE N  I  F AG +THP+  EI N L  +  + K  GY PDT   L+   DI +EE
Sbjct: 953  VSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEE 1012

Query: 723  KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
            +E  L +HSE+LA++ GLI++   + IR+ KNLRIC DCHTA KFIS+   R I+ RD +
Sbjct: 1013 EEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTN 1072

Query: 783  RFHHFKHGSCSCMDFW 798
            RFHHF++G CSC D+W
Sbjct: 1073 RFHHFENGKCSCGDYW 1088



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 157/632 (24%), Positives = 296/632 (46%), Gaps = 82/632 (12%)

Query: 2   TLATKLAHLSSTIKSSVNAKPIFKPT---------INLSILETHLQKC---QSFKQFTQI 49
           + +    H ++TIK   N     KPT         +N     + +Q C    SF++   I
Sbjct: 34  SFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSI 93

Query: 50  LSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
            +QMI  G   D +  ++++          ++ Y+ K+F  +   N   +NTM+ AY + 
Sbjct: 94  HTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARV 153

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
           +   + + LY  M  +    D +T+P + +A      +   + +   V+KAG + +++V 
Sbjct: 154 DDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVG 213

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------ 223
             L++ YA  G +  A    DE     +V+WN+++AGYV   + EEA  I+++M      
Sbjct: 214 GALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC 273

Query: 224 PERNIIAS-----------------NSMIVLFGRKGNV---------------AEAC-RL 250
           P+    AS                 +S ++  G KG+                 E+C ++
Sbjct: 274 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKV 333

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F EM +++ V+W+++IS   Q   + +ALVLF+ M +     +   + S+L A A L  +
Sbjct: 334 FDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADI 393

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
             G  +H   V+  +   I L +AL+ MYS CG +  A ++F +    + +S+N++++GY
Sbjct: 394 GKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           ++ G  E+A  L+                    HD  SE           GI+PD+ T  
Sbjct: 454 VQEGKAEEALELY--------------------HDMQSED----------GIQPDQFTFT 483

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           ++++ C +    +QG+ IHA++ +  +  N I+ T L+ MY + G ++ A E+F+   E+
Sbjct: 484 TLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER 543

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
              SWN++I G+  NG   ++L +F +M+ +G+ P+  +   +L +C  +    +G R  
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-REL 602

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           ++ I  + +E        +VD+  + G +  A
Sbjct: 603 HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 161/668 (24%), Positives = 283/668 (42%), Gaps = 126/668 (18%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG---DLSAA 185
           V+   Y  L Q      S   GK IH  ++  G++ D Y+   ++ +YA  G   DL  A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER------------------- 226
           RKLF+E P  +L +WN+++  Y   D+  E   +Y +M                      
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 227 --------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                               N+    +++  + R G + +A     E+    +V+W+A+I
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           + Y +   +EEA  +F  M+   V  D     S L  C  L     G  VH+  +  G +
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               + NALI MY+ C +  +  K+FD     + ++WNS                     
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS--------------------- 347

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                     +IS  AQ   F++ L LF+ MQ  G + +   L S++ A   L  + +G+
Sbjct: 348 ----------IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGR 397

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +H ++ +N L  + ILG+ L+DMY K G V+ A +VF    E+   S+NAL+ G+   G
Sbjct: 398 ELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEG 457

Query: 507 LADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEG---HRHF------NSMIQE 556
            A+++LE++ +M+ + G+ P++ TF  +L  C +    ++G   H H        ++I E
Sbjct: 458 KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517

Query: 557 HRL---------------------EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS--- 592
             L                     E N+  +  M++   + G  +EA  L + M ++   
Sbjct: 518 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 577

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-FHVLLSNIHASKGRWDDVLEV 651
           PD  +  ++L +C    D + G  +   +V    + +G   V+L +++A  G  D   +V
Sbjct: 578 PDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKV 637

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK------LE 705
               +++ V        I  N ++  F+   R     N+  N+ D+M ++        L 
Sbjct: 638 YDQTIKKDV--------ILNNVMVSAFVNSGRA----NDAKNLFDQMEQRNTALWNSILA 685

Query: 706 GYAPDTLE 713
           GYA   L+
Sbjct: 686 GYANKGLK 693


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/726 (36%), Positives = 409/726 (56%), Gaps = 71/726 (9%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           ++A+ +   M+     V +  +  L Q  A   S+ +G+ +H  +LK+G   + Y+ NTL
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER 226
           ++MYA CG L+ AR++FD     ++VSW +++  +V  +   EA   Y  M      P++
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 227 NIIAS---------------------------------NSMIVLFGRKGNVAEACRLFKE 253
               S                                  S++ ++ + G++++A  +F  
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDR 208

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +P+K++V+W+ LI+ Y Q    + AL L   M    V  +++   S+L  C     ++ G
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             VH   ++                               +G+  +L   NS+I+ Y KC
Sbjct: 269 KKVHRYIIQ-------------------------------SGYGRELWVVNSLITMYCKC 297

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +E+AR LF  +  +DVV+W+ M++GYAQ     E ++LF  MQ  GI+PD+ T  SV+
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           ++C+    L +GK IH  +   G  ++  L + L+ MY K G +D+A  VF+   E+ V 
Sbjct: 358 TSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVV 417

Query: 494 SWNALIIGF-AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
           +W A+I G  A +G   ++LE F +MKK G+ P+++TF  VL AC H+GLV+EG +HF S
Sbjct: 418 AWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRS 477

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M  ++ ++P  +HY C VDLLGRAG L+EAE +I SMP  P  + WGALL AC+ H D E
Sbjct: 478 MYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVE 537

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            GER    +++L PD DG +V LS+I+A+ GR++D  +VR +M +R VVK PG S IE +
Sbjct: 538 RGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 597

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G +H F   D++HP+  +I   L ++ +++K  GY PDT  V  D+D+E+KE  LF HSE
Sbjct: 598 GKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSE 657

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           +LAI +GL+   P  PIRI+KNLR+C DCHTA KFIS+   REI+ RD  RFHHF  G C
Sbjct: 658 RLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVC 717

Query: 793 SCMDFW 798
           SC DFW
Sbjct: 718 SCGDFW 723



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 232/507 (45%), Gaps = 77/507 (15%)

Query: 37  LQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ+C   +S +Q  ++ + ++ +G+  + +  + L+          +   + ++F  +  
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTD---ARRVFDSIRD 110

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +  M+ A++  N   +A   Y+ M       D  T+  L  A      +  G+ +
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  +++AG + +  V  +L+ MYA CGD+S AR +FD  P  ++V+W  ++AGY     V
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230

Query: 214 ----------EEAKFIYNKMP--------------------ERNIIAS---------NSM 234
                     ++A+   NK+                      R II S         NS+
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSL 290

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I ++ + G + EA +LF ++P +D+V+W+A+++ Y Q   ++EA+ LF  M    +  D+
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           +   SVL++C++   ++ G  +H   V  G    + LQ+AL+ MY+ CG +  A  +F+ 
Sbjct: 351 MTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               ++++W ++I+G                                AQH +  E L  F
Sbjct: 411 MSERNVVAWTAIITGCC------------------------------AQHGRCREALEYF 440

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMK 473
            +M+  GI+PD+ T  SV+SACTH+  +++G K   +     G+K      +  +D+  +
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 500

Query: 474 LGCVDNALEVFHGTEE-KGVSSWNALI 499
            G ++ A  V        G S W AL+
Sbjct: 501 AGHLEEAENVILSMPFIPGPSVWGALL 527



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 2/212 (0%)

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           +S   +  +  E L +   M   G R        ++  C  L +L+QG+ +HA I K+G+
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           + N  L  TL+ MY K G + +A  VF    ++ + SW A+I  F       ++ + +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           MK +G  P+++TFV +L A  +  L+  G +  +  I E  LE   +    +V +  + G
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQK-VHMEIVEAGLELEPRVGTSLVGMYAKCG 197

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + +A  + + +P   +V TW  L+    + G
Sbjct: 198 DISKARVIFDRLP-EKNVVTWTLLIAGYAQQG 228



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 20/289 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F+ L   +   +  M+  Y Q     +AI L++ M    +  D  T+  +  + +   
Sbjct: 305 KLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPA 364

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + EGK IH  ++ AG++ DVY+ + L++MYA CG +  A  +F++    ++V+W +I+ 
Sbjct: 365 FLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIIT 424

Query: 206 G-YVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP----- 255
           G         EA   +++M ++ I    +   S++      G V E  + F+ M      
Sbjct: 425 GCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGI 484

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           K  +  +S  +    +    EEA  + ++M     +    V  ++LSAC   + V+ G  
Sbjct: 485 KPMVEHYSCFVDLLGRAGHLEEAENVILSM---PFIPGPSVWGALLSACRVHSDVERGER 541

Query: 316 VHALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
                +K+  +    Y+    AL  +Y++ G    AEK+       D++
Sbjct: 542 AAENVLKLDPDDDGAYV----ALSSIYAAAGRYEDAEKVRQVMEKRDVV 586


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/569 (45%), Positives = 363/569 (63%), Gaps = 20/569 (3%)

Query: 250 LFKEMPKKDLVSWSALISCY-EQNE--MYEEALVLFMNMI-DHRVMVDEVVVVSVLSACA 305
           +F++MP+ +   W+ ++    E N+  +  EAL+LF  M+ D RV  +     SVL ACA
Sbjct: 74  VFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACA 133

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-------DAGHNL 358
             + ++ G  +H L VK G      + + L+ MY  C  +  A  LF       D    +
Sbjct: 134 RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQM 193

Query: 359 DL---------ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +L         + WN MI G ++ G ++ A+ LFD M ++ VVSW+ MISGYAQ+  F E
Sbjct: 194 ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIE 253

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            ++LF EMQ   I P+  TLVSV+ A   + AL+ GKWIH Y  KN ++I+ +LG+ L+D
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +D AL+VF    ++   +W+A+I  FAM+G A+ ++  F  M K+GVTPN++ 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           ++G+L AC H GLV+EG   F+ M++   L+P  +HYGCMVDLLGRAG L+EAEELI +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD   W ALLGACK H + +MGERV   L+EL P   G +V LSN++AS G W+ V 
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVA 493

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR  M    + K PGCS IE +GIIHEFL  D +H +  EI  ML EM+ KL+  GY P
Sbjct: 494 RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRP 553

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           +TLEV  + D++E+   L  HSEK+A+AFGLI+ +P +P++I+KNLRIC DCH + K IS
Sbjct: 554 NTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLIS 613

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             + R+I+VRDR RFH F+HGSCSCMD+W
Sbjct: 614 LIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 220/482 (45%), Gaps = 55/482 (11%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           F P   L IL      C++ +   Q+ +  I TG I D   A+ +IKF        ++ Y
Sbjct: 14  FSPQPPL-ILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCA--FSSRDIDY 70

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRN---VPQQAICLYKLML-NNNVGVDNYTYPLLAQ 139
           +  +F  +  PN F +NT++R   + N   +  +A+ L+  ML +  V  + +T+P + +
Sbjct: 71  ARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLK 130

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A    + EGK IH  ++K GF  D +V + L+ MY +C  +  A  LF          
Sbjct: 131 ACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF---------- 180

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                   V+ D   + +    K  + N++  N MI    R G++  A  LF EMP++ +
Sbjct: 181 ----CKNVVDFDGSCQMELDKRKQ-DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSV 235

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           VSW+ +IS Y QN  + EA+ LF  M    +  + V +VSVL A A +  ++ G  +H  
Sbjct: 236 VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
           A K  IE    L +AL+ MYS CG I  A ++F+     + I+W                
Sbjct: 296 AGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITW---------------- 339

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                          S +I  +A H +  + +  F  M   G+ P++   + ++SAC+H 
Sbjct: 340 ---------------SAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHA 384

Query: 440 VALDQGKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNA 497
             +++G+   +++ K  GL+        ++D+  + G ++ A E+      E     W A
Sbjct: 385 GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKA 444

Query: 498 LI 499
           L+
Sbjct: 445 LL 446


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/791 (35%), Positives = 433/791 (54%), Gaps = 74/791 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I SQ+I  G   D    + L+          ++  + ++FA +   +   +NTM+  Y 
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCG---DLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q+   ++ + L+  M +  +  D  TY  L  A      + EGK IH   ++ G +SD+ 
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY---------------VNADN 212
           V   L+ M   CGD+ +A++ F      D+V +N+++A                 + +D 
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 213 V--------------------EEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEAC 248
           V                    E  K I++ + E     ++   N++I ++ R G++ +A 
Sbjct: 326 VALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAR 385

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            LF  MPK+DL+SW+A+I+ Y + E   EA+ L+  M    V    V  + +LSACAN +
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
               G  +H   ++ GI+   +L NAL++MY                             
Sbjct: 446 AYADGKMIHEDILRSGIKSNGHLANALMNMYR---------------------------- 477

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
              +CGS+ +A+ +F+    +DV+SW++MI+G+AQH  +     LF EMQ+  + PD  T
Sbjct: 478 ---RCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             SV+S C +  AL+ GK IH  I ++GL+++  LG  LI+MY++ G + +A  VFH  +
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGH 547
            + V SW A+I G A  G   K++E+F +M+  G  P +  TF  +L AC H GLV EG+
Sbjct: 595 HRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGY 654

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           + F+SM  E+ + P  +HYGC+V LLGRA   +EAE LI  MP  PD A W  LLGAC+ 
Sbjct: 655 QIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRI 714

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG+  + E      ++L   +   ++LLSN++A+ GRWDDV ++R +M  RG+ K PG S
Sbjct: 715 HGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 774

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            IE + IIHEF+A DR+HP+  EI   L  ++ +++  GY PDT  V  D+ +  +ET+L
Sbjct: 775 WIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSL 834

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSE+LAIA+GLI   P  PIRI KNLRIC DCHTA+KFIS+   REI+ RD +RFH F
Sbjct: 835 CTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSF 894

Query: 788 KHGSCSCMDFW 798
           K+G CSC D+W
Sbjct: 895 KNGKCSCEDYW 905



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 161/616 (26%), Positives = 290/616 (47%), Gaps = 78/616 (12%)

Query: 37  LQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C       +  +I +QM+  G+  D F ++ LI         ++   + ++F  +  
Sbjct: 34  LQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD---AHQVFKEMPR 90

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N+++  Y Q+   ++A  L++ M N     +  TY  +  A      +  GK I
Sbjct: 91  RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKI 150

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++KAG+  D  V N+L++MY  CGDL  AR++F      D+VS+N++L  Y     V
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYV 210

Query: 214 EEAKFIYNKM------PER---------------------------------NIIASNSM 234
           +E   ++ +M      P++                                 +I    ++
Sbjct: 211 KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL 270

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + +  R G+V  A + FK +  +D+V ++ALI+   Q+    EA   +  M    V ++ 
Sbjct: 271 VTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNR 330

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
              +S+L+AC+    ++AG  +H+   + G    + + NALI MY+ CG++  A +LF  
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYT 390

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               DLISWN++I                               +GYA+ +   E + L+
Sbjct: 391 MPKRDLISWNAII-------------------------------AGYARREDRGEAMRLY 419

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +MQ  G++P   T + ++SAC +  A   GK IH  I ++G+K N  L   L++MY + 
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A  VF GT+ + V SWN++I G A +G  + + ++F EM+   + P+ ITF  VL
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVL 539

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
             C++   ++ G +  +  I E  L+ +      ++++  R G L++A  +  S+    D
Sbjct: 540 SGCKNPEALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRD 597

Query: 595 VATWGALLGACKKHGD 610
           V +W A++G C   G+
Sbjct: 598 VMSWTAMIGGCADQGE 613



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/553 (25%), Positives = 264/553 (47%), Gaps = 82/553 (14%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            D  TY  L Q    +  + E K IH  +++AG   D++++N LINMY  C  +  A ++
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 189 FDESPVLDLVSWNSILAGYVNA----------DNVEEAKFIYNKMP-------------- 224
           F E P  D++SWNS+++ Y             + ++ A FI NK+               
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 225 ---------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                          +R+    NS++ ++G+ G++  A ++F  +  +D+VS++ ++  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            Q    +E L LF  M    +  D+V  +++L A    +++  G  +H L V+ G+   I
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            +  AL+ M   CG++ +A++ F                                 + ++
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAF-------------------------------KGIADR 293

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           DVV ++ +I+  AQH    E    +  M+  G+  +  T +S+++AC+   AL+ GK IH
Sbjct: 294 DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIH 353

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           ++I ++G   +  +G  LI MY + G +  A E+F+   ++ + SWNA+I G+A      
Sbjct: 354 SHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-- 567
           +++ ++ +M+  GV P  +TF+ +L AC +     +G      MI E  L    K  G  
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHL 468

Query: 568 --CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--E 623
              ++++  R G L EA+ + E    + DV +W +++    +HG +E   ++ +++   E
Sbjct: 469 ANALMNMYRRCGSLMEAQNVFEGT-QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE 527

Query: 624 LQPDHDGFHVLLS 636
           L+PD+  F  +LS
Sbjct: 528 LEPDNITFASVLS 540



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 420 HGIRP---DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           H  RP   D AT V+++  CT    L + K IHA + + G+  +  L   LI+MY+K   
Sbjct: 18  HQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRS 77

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           V +A +VF     + V SWN+LI  +A  G   K+ ++F EM+ +G  PN+IT++ +L A
Sbjct: 78  VLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DV 595
           C     ++ G +  +S I +   + + +    ++ + G+ G L  A ++     +SP DV
Sbjct: 138 CYSPAELENG-KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG--ISPRDV 194

Query: 596 ATWGALLG 603
            ++  +LG
Sbjct: 195 VSYNTMLG 202


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/762 (38%), Positives = 436/762 (57%), Gaps = 14/762 (1%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           K  + +Q  Q    ++   L +  +  S L+   T L      +Y   IF    SP+  +
Sbjct: 10  KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRL--HAHPAYVDSIFTSSPSPDASV 67

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ M++ Y +     Q + L+K   + N+    + Y  L     ++L+   G L H +VL
Sbjct: 68  YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYL-----IKLAGKSGNLFHAYVL 122

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G   D ++ N +++MYA  G +  AR LF++     L  WNS+++G   + N  EA  
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++N MP RNII   SM+  + + G++  A R F EMP++ +VSW+A+ S Y Q E  +EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L LF  M++  +  D+   V  +S+C+++       S+  +  +  I     ++ AL+ M
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 339 YSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           ++  G +  A  +FD  G   + ++WN MIS Y + G +  AR LFD M ++DVVSW++M
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 398 ISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I+GYAQ+ + + ++ LF EM     I+PDE T+ SV+SAC H+ AL    W+   +R+  
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +K+      +LI MY K G V +A  +F     + V S+N LI GFA NG   +++++  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            M++ G+ P+ +T++GVL AC H GL++EG   F S IQ     P   HY CMVDLLGRA
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKS-IQA----PTVDHYACMVDLLGRA 537

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L EA+ LI+SMPM P    +G+LL A + H    +GE    KL EL+P + G +VLLS
Sbjct: 538 GELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+AS GRW+DV  VR MM + G+ K  G S +E  G +H+F  GDR+H Q  +I  +L 
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLA 657

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+ +K+K  G+  D      D+++EEKE  L  HSEKLAI F L+       IR++KNLR
Sbjct: 658 ELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLR 717

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCHTA K IS+   REIVVRD +RFH F  G CSC D+W
Sbjct: 718 ICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/745 (37%), Positives = 424/745 (56%), Gaps = 35/745 (4%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYSFKIFAFLESPNGFIF 99
           +S +Q +Q+ + +  +G IA   +A  L+   T+ L     + Y   +F  L  P  F+ 
Sbjct: 10  RSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLH 69

Query: 100 NTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +T +RA +Q +      + + + M    V +  +T+  + +  A        +++H   L
Sbjct: 70  DTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACL 129

Query: 159 KAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           +    S    V N LI+MYA  G    AR+ FDE PV D V W +++ G V         
Sbjct: 130 RTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLV--------- 180

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                                 R G + EA RL  + P++++VSW++LI+ Y +     +
Sbjct: 181 ----------------------RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPAD 218

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           A+  F  M+   V  DEV V+  LSAC+ L  ++ G  +H L  K  I+    L   LI 
Sbjct: 219 AVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLID 278

Query: 338 MYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           MY+ CG+I  A+ +FDA G       WN +I GY K G V+ AR+LFD M  +DV+++++
Sbjct: 279 MYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNS 338

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI+GY    +  + L LFM+++ HG+R D  T+VS+++AC  L AL QG+ +HA I +  
Sbjct: 339 MITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI 398

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           ++ +  L T L+DMYMK G VD A  VFH   E+ V +W+A+I G A NG+   +LE F 
Sbjct: 399 VEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFC 458

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +MK+ G  P  +T++ VL AC H  L++EG +HFN M   H+L P  +HYGCM+DLL R+
Sbjct: 459 QMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARS 518

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G+L EA  L+++MPM P+   W ++L AC+ H + ++       L++L P+ D  +V L 
Sbjct: 519 GLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLY 578

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+    +W +   +R +M  +GV K  G S I   G +H+F+  D++HP   EI  M++
Sbjct: 579 NIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMME 638

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+A++LK  GY+P T  +A D+D+EEKE  L  HSEK+AIAFGLI++ P  PI IMKNLR
Sbjct: 639 EIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLR 698

Query: 757 ICNDCHTAAKFISRAFDREIVVRDR 781
           +C DCH+A K IS+ ++REI+VRDR
Sbjct: 699 VCEDCHSAIKLISQLWNREIIVRDR 723


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/762 (38%), Positives = 436/762 (57%), Gaps = 14/762 (1%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           K  + +Q  Q    ++   L +  +  S L+   T L      +Y   IF    SP+  +
Sbjct: 10  KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRL--HAHPAYVDSIFTSSPSPDASV 67

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ M++ Y +     Q + L+K   + N+    + Y  L     ++L+   G + H +VL
Sbjct: 68  YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYL-----IKLAGKSGNMFHAYVL 122

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G   D ++ N +++MYA  G +  AR LF++     L  WNS+++G   + N  EA  
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++N MP RNII   SM+  + + G++  A R F EMP++ +VSW+A+ S Y Q E  +EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L LF  M++  +  D+   V  +S+C+++       S+  +  +  I     ++ AL+ M
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 339 YSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           ++  G +  A  +FD  G   + ++WN MIS Y + G +  AR LFD M ++DVVSW++M
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 398 ISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I+GYAQ+ + + ++ LF EM     I+PDE T+ SV+SAC H+ AL    W+   +R+  
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +K+      +LI MY K G V +A  +F     + V S+N LI GFA NG   +++++  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            M++ G+ P+ +T++GVL AC H GL++EG   F S IQ     P   HY CMVDLLGRA
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKS-IQA----PTVDHYACMVDLLGRA 537

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L EA+ LI+SMPM P    +G+LL A + H    +GE    KL EL+P + G +VLLS
Sbjct: 538 GELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+AS GRW+DV  VR MM + G+ K  G S +E  G +H+F  GDR+H Q  +I  +L 
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLA 657

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+ +K+K  G+  D      D+++EEKE  L  HSEKLAI F L+       IR++KNLR
Sbjct: 658 ELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLR 717

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCHTA K IS+   REIVVRD +RFH F  G CSC D+W
Sbjct: 718 ICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/703 (38%), Positives = 404/703 (57%), Gaps = 54/703 (7%)

Query: 140 ASALRLSVFEGKLIHDHVLKAGFD-----------SDVYVNNTLINMYAVCGDLSAARKL 188
           A  LR SV    +I  ++  A F             D++  N ++  YA    L  AR L
Sbjct: 58  AMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARML 117

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEAC 248
           FD  P  D+VSWN++L+GYV + +V+EA+ ++++MP +N I+ N ++  + R G + EA 
Sbjct: 118 FDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEAR 177

Query: 249 RLFK-------------------------------EMPKKDLVSWSALISCYEQNEMYEE 277
           RLF+                               ++P +DL+SW+ +IS Y Q+    +
Sbjct: 178 RLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQ 237

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANL-TVVKAGTSVHALAVKIGIECYINLQ-NAL 335
           A  LF          +E  V  V +  A +   V+ G    A  V   +     +  N +
Sbjct: 238 ARRLF----------EESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVM 287

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I  Y+    +    +LF+     ++ SWN MISGY + G + +AR LFD M ++D VSW+
Sbjct: 288 IAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWA 347

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            +I+GYAQ+  + E +++ +EM+  G   + +T    +SAC  + AL+ GK +H  + + 
Sbjct: 348 AIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT 407

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G +   ++G  L+ MY K GC+D A +VF G + K + SWN ++ G+A +G   ++L +F
Sbjct: 408 GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVF 467

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             M  +GV P+EIT VGVL AC H GL D G  +F+SM +++ + PNSKHY CM+DLLGR
Sbjct: 468 ESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGR 527

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG L+EA+ LI +MP  PD ATWGALLGA + HG+ E+GE+    + +++P + G +VLL
Sbjct: 528 AGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLL 587

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN++A+ GRW DV ++R  M + GV K PG S +E    IH F  GD  HP+   I   L
Sbjct: 588 SNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFL 647

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +E+  K+K EGY   T  V  D+++EEK+  L  HSEKLA+AFG++T+    PIR+MKNL
Sbjct: 648 EELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNL 707

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCH A K IS+   R I+VRD HR+HHF  G CSC D+W
Sbjct: 708 RVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 206/432 (47%), Gaps = 38/432 (8%)

Query: 188 LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247
           +FD  P+ + VS+N++++GY+       A+ +++KMP +++ + N M+  + R   + +A
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF-----MNMIDHRVMVDEVVVVSVLS 302
             LF  MP+KD+VSW+A++S Y ++   +EA  +F      N I    ++   V    L 
Sbjct: 115 RMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLE 174

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
               L   K+   +        I C     N L+  Y     +  A +LFD     DLIS
Sbjct: 175 EARRLFESKSDWEL--------ISC-----NCLMGGYVKRNMLGDARQLFDQIPVRDLIS 221

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WN+MISGY + G + +AR LF+    +DV +W+ M+  Y Q     E   +F EM     
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP---- 277

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +  E +   +I+       +D G+ +   +    +   +I    +I  Y + G +  A  
Sbjct: 278 QKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNI----MISGYCQNGDLAQARN 333

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F    ++   SW A+I G+A NGL ++++ M  EMK+ G + N  TF   L AC  +  
Sbjct: 334 LFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAA 393

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVD--LLG---RAGMLKEAEELIESMPMSPDVAT 597
           ++ G +    +++           GC+V   L+G   + G + EA ++ + +    D+ +
Sbjct: 394 LELGKQVHGQVVR------TGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV-QHKDIVS 446

Query: 598 WGALLGACKKHG 609
           W  +L    +HG
Sbjct: 447 WNTMLAGYARHG 458



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 53/265 (20%)

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           IS +++ G  + A  +FDAM  ++ VS++ MISGY ++ +FS    LF +M H  +    
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L                     Y R   L+                    +A  +F  
Sbjct: 100 LMLT-------------------GYARNRRLR--------------------DARMLFDS 120

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK V SWNA++ G+  +G  D++ ++F  M       N I++ G+L A    G ++E 
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEA 176

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R F S      +  N     C++    +  ML +A +L + +P+  D+ +W  ++    
Sbjct: 177 RRLFESKSDWELISCN-----CLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISGYA 230

Query: 607 KHGDHEMGERVGRKLVELQPDHDGF 631
           + GD        R+L E  P  D F
Sbjct: 231 QDGDLSQ----ARRLFEESPVRDVF 251



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ +  +F  +   +   +  ++  Y Q  + ++A+ +   M  +   ++  T+     
Sbjct: 327 DLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALS 386

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  GK +H  V++ G++    V N L+ MY  CG +  A  +F      D+VS
Sbjct: 387 ACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS 446

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI------------------------------- 228
           WN++LAGY       +A  ++  M    +                               
Sbjct: 447 WNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMN 506

Query: 229 ----IASNS-----MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
               I  NS     MI L GR G + EA  L + MP + D  +W AL+     +   E+ 
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 276 EEALVLFMNMIDH 288
           E+A  +   M  H
Sbjct: 567 EQAAEMVFKMEPH 579


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/569 (45%), Positives = 362/569 (63%), Gaps = 20/569 (3%)

Query: 250 LFKEMPKKDLVSWSALISCY-EQNE--MYEEALVLFMNMI-DHRVMVDEVVVVSVLSACA 305
           +F++MP+ +   W+ ++    E N+  +  EAL+LF  M+ D RV  +     SVL ACA
Sbjct: 74  VFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACA 133

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-------DAGHNL 358
             + ++ G  +H L VK G      + + L+ MY  C  +  A  LF       D    +
Sbjct: 134 RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQM 193

Query: 359 DL---------ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +L         + WN MI G ++ G ++ A+ LFD M  + VVSW+ MISGYAQ+  F E
Sbjct: 194 ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIE 253

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            ++LF EMQ   I P+  TLVSV+ A   + AL+ GKWIH Y  KN ++I+ +LG+ L+D
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +D AL+VF    ++   +W+A+I  FAM+G A+ ++  F  M K+GVTPN++ 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           ++G+L AC H GLV+EG   F+ M++   L+P  +HYGCMVDLLGRAG L+EAEELI +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD   W ALLGACK H + +MGERV   L+EL P   G +V LSN++AS G W+ V 
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVA 493

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR  M    + K PGCS IE +GIIHEFL  D +H +  EI  ML EM+ KL+  GY P
Sbjct: 494 RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRP 553

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           +TLEV  + D++E+   L  HSEK+A+AFGLI+ +P +P++I+KNLRIC DCH + K IS
Sbjct: 554 NTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLIS 613

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             + R+I+VRDR RFH F+HGSCSCMD+W
Sbjct: 614 LIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 223/490 (45%), Gaps = 61/490 (12%)

Query: 23  IFKP--TINLS-----ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL 75
           I+ P  T+N S     IL      C++ +   Q+ +  I TG I D   A+ +IKF    
Sbjct: 5   IYNPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCA-- 62

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN---VPQQAICLYKLML-NNNVGVDN 131
               ++ Y+  +F  +  PN F +NT++R   + N   +  +A+ L+  ML +  V  + 
Sbjct: 63  FSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNR 122

Query: 132 YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           +T+P + +A A    + EGK IH  ++K GF  D +V + L+ MY +C  +  A  LF  
Sbjct: 123 FTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF-- 180

Query: 192 SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251
                           V+ D   + +    K  + N++  N MI    R G++  A  LF
Sbjct: 181 ------------CKNVVDFDGSCQMELDKRKQ-DGNVVLWNIMIDGQVRLGDIKSAKNLF 227

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            EMP + +VSW+ +IS Y QN  + EA+ LF  M    +  + V +VSVL A A +  ++
Sbjct: 228 DEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALE 287

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H  A K  +E    L +AL+ MYS CG I  A ++F+     + I+W        
Sbjct: 288 LGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITW-------- 339

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                  S +I  +A H +  + +  F  M   G+ P++   + 
Sbjct: 340 -----------------------SAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIG 376

Query: 432 VISACTHLVALDQGKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-E 489
           ++SAC+H   +++G+   +++ K  GL+        ++D+  + G ++ A E+      E
Sbjct: 377 ILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIE 436

Query: 490 KGVSSWNALI 499
                W AL+
Sbjct: 437 PDDVIWKALL 446


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/673 (39%), Positives = 389/673 (57%), Gaps = 74/673 (10%)

Query: 169 NNTLINMYAVCG----DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           +N L+NM   C     D +  R LF +    ++  WN+++ G V+ D  ++A   Y  M 
Sbjct: 45  DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104

Query: 225 ERNIIASN---------------------------------------SMIVLFGRKGNVA 245
               + +N                                       S++ L+ + G + 
Sbjct: 105 SEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLE 164

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +A ++F ++P K++VSW+A+IS Y     + EA+ +F  +++  +  D   +V VLSAC 
Sbjct: 165 DAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACT 224

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L  + +G  +H   +++G+   + +  +L+ MY+                         
Sbjct: 225 QLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA------------------------- 259

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
                 KCG++EKAR++FD M EKD+VSW  MI GYA +    E + LF++MQ   ++PD
Sbjct: 260 ------KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPD 313

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T+V V+SAC  L AL+ G+W+   + +N    N +LGT LID+Y K G +  A EVF 
Sbjct: 314 CYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFK 373

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
           G +EK    WNA+I G AMNG    S  +F +++K G+ P+  TF+G+L  C H GLVDE
Sbjct: 374 GMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDE 433

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G R+FNSM +   L P+ +HYGCMVDLLGRAG+L EA +LI +MPM  +   WGALLGAC
Sbjct: 434 GRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGAC 493

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + H D ++ E   ++L+EL+P + G +VLLSNI+++  +WD+  +VR  M  + + K PG
Sbjct: 494 RIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPG 553

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           CS IE +GI+HEFL GD+ HP   +I   LDE+ KK+K+ GY P T  V FDI++EEKE 
Sbjct: 554 CSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEH 613

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLAIAFGLI+ +P   IR++KNLR+C DCH A K IS    REI VRD +RFH
Sbjct: 614 FLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFH 673

Query: 786 HFKHGSCSCMDFW 798
            F+ GSCSC D+W
Sbjct: 674 CFREGSCSCNDYW 686



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 244/522 (46%), Gaps = 76/522 (14%)

Query: 20  AKPIFKP-TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           ++P   P +  L I +  LQ   SFK    + + ++  GL  D +  + +++ S D   F
Sbjct: 3   SRPTSPPISKGLEIKKLILQGFNSFKHLKHLHAHLLRFGLCHDNYLLNMILRCSFD---F 59

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
            + +Y+  +F  ++ PN F++NTM+R  +  +    AI  Y LM +     +N+T+P + 
Sbjct: 60  SDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVL 119

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +A A  L +  G  IH  V+K GFD DV+V  +L+ +YA CG L  A K+FD+ P  ++V
Sbjct: 120 KACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVV 179

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPE--------------------------------- 225
           SW +I++GY+      EA  ++ ++ E                                 
Sbjct: 180 SWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCI 239

Query: 226 ------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                 RN+    S++ ++ + GN+ +A  +F  MP+KD+VSW A+I  Y  N + +EA+
Sbjct: 240 MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAI 299

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            LF+ M    V  D   VV VLSACA L  ++ G  V  L  +        L  ALI +Y
Sbjct: 300 DLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLY 359

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           + CG ++ A ++F      D + WN++ISG                            ++
Sbjct: 360 AKCGSMSRAWEVFKGMKEKDRVVWNAIISG--------------------------LAMN 393

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLK 458
           GY +      +  LF +++  GI+PD  T + ++  CTH   +D+G ++ ++  R   L 
Sbjct: 394 GYVKI-----SFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLT 448

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            +      ++D+  + G +D A ++      E     W AL+
Sbjct: 449 PSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL 490


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/554 (45%), Positives = 359/554 (64%), Gaps = 2/554 (0%)

Query: 247 ACRLFK--EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           A ++FK  E  K +   W++ +    + +   +A++LF  +  + V  D     SVL AC
Sbjct: 79  AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
            NL  +  G  +H +  K+G    + LQN ++H+Y+SCGE+  A  LF+     D+++WN
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            MI+  +K G  E A  LF  M E++V SW++MI+GY Q  +  E + LF +M+  G++ 
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC 258

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +E T+V+V++AC  L ALD G  IH Y  ++G K N  +  TLIDMY+K GC++ A +VF
Sbjct: 259 NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVF 318

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
              EE+ V SW+A+I G AM+G A+++L +FS+M + G+ PN +TF+G+L AC HMGL+ 
Sbjct: 319 EEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLIS 378

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG R F SM +++ + P  +HYGCMVDLL RAG+L EA E I +MPM P+   WGALLGA
Sbjct: 379 EGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 438

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ H + EM E   + L+EL P +DG++V+LSNI+A  GRW+D   VR  M  R V K P
Sbjct: 439 CRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTP 498

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S I  +G++HEF+AG+ +HP   +I    +E+ ++++L+GY P+T  V  DI++ EK 
Sbjct: 499 GWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKV 558

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             + RHSEKLA+ FGL+      PIRIMKNLRIC DCH+A K IS   +REIVVRDR+RF
Sbjct: 559 KFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRF 618

Query: 785 HHFKHGSCSCMDFW 798
           H F   SCSC D+W
Sbjct: 619 HCFNDNSCSCRDYW 632


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/567 (45%), Positives = 361/567 (63%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           +++I ++   G + +A  LF +M  +D+V+W+ +I  Y QN  Y+  L L+  M      
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D +++ +VLSACA+   +  G ++H      G     ++Q +L++MY++CG +  A ++
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           +D   +  ++   +M+SGY K G V+ AR +FD M+EKD+V WS MISGYA+  Q  E L
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEAL 334

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF EMQ   I PD+ T++SVISAC ++ AL Q KWIH Y  KNG      +   LIDMY
Sbjct: 335 QLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMY 394

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A EVF     K V SW+++I  FAM+G AD ++ +F  MK+  + PN +TF+
Sbjct: 395 AKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFI 454

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLV+EG + F+SMI EHR+ P  +HYGCMVDL  RA  L++A ELIE+MP 
Sbjct: 455 GVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPF 514

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+V  WG+L+ AC+ HG+ E+GE    +L+EL+PDHDG  V+LSNI+A + RWDDV  V
Sbjct: 515 PPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLV 574

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  +GV K   CS IE N  +H F+  DR H Q +EI   LD +  +LKL GY P T
Sbjct: 575 RKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPST 634

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             +  D+++EEK+  +  HSEKLA+ +GLI     + IRI+KNLRIC DCH+  K +S+ 
Sbjct: 635 SGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKV 694

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
              EIV+RDR RFHHF  G CSC D+W
Sbjct: 695 HRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 140/611 (22%), Positives = 252/611 (41%), Gaps = 146/611 (23%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS---YSFKIFAFLES 93
           L  C++ +   QI +Q IL   + ++      +      LP    S   Y+  +F+ + +
Sbjct: 19  LASCKTLRHVKQIHAQ-ILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P     N ++R + +   P+  + LY  +  N   +D +++P L +A +   ++  G  I
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 154 HDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H    K GF  +D ++ + LI MYA CG +  AR LFD+    D+V+WN ++ GY    +
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197

Query: 213 VEEAKFIYNKM------PERNIIAS---------------------------------NS 233
            +    +Y +M      P+  I+ +                                  S
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257

Query: 234 MIVLFGRKGNVAEACRLFKEMPKK-------------------------------DLVSW 262
           ++ ++   G +  A  ++ ++P K                               DLV W
Sbjct: 258 LVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           SA+IS Y ++    EAL LF  M   R++ D++ ++SV+SACAN+  +     +H  A K
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADK 377

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G    + + NALI MY+ CG +  A ++F+     ++ISW+SMI+ +   G  + A AL
Sbjct: 378 NGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIAL 437

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F  M E++                               I P+  T + V+ AC+H   +
Sbjct: 438 FHRMKEQN-------------------------------IEPNGVTFIGVLYACSHAGLV 466

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           ++G K+  + I ++ +         ++D+Y    C  N L                    
Sbjct: 467 EEGQKFFSSMINEHRISPQREHYGCMVDLY----CRANHLR------------------- 503

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
                   K++E+   M      PN I +  ++ AC++ G ++ G      +++   LEP
Sbjct: 504 --------KAMELIETMP---FPPNVIIWGSLMSACQNHGEIELGEFAATRLLE---LEP 549

Query: 562 NSKHYGCMVDL 572
           +  H G +V L
Sbjct: 550 D--HDGALVVL 558


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/569 (43%), Positives = 372/569 (65%), Gaps = 17/569 (2%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEE--ALVLFMNMI-DHRVMVDEVVVVSVLSA 303
           A ++F +MP+++  SW+ +I  + +++  +   A+ LF  M+ D  V  +     SVL A
Sbjct: 78  AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF----------- 352
           CA    ++ G  +H LA+K G      + + L+ MY  CG +  A  LF           
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197

Query: 353 ---DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                  + +++ WN MI GY++ G  + AR LFD M ++ VVSW+TMISGY+ +  F +
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            + +F EM+   IRP+  TLVSV+ A + L +L+ G+W+H Y   +G++I+ +LG+ LID
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 317

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G ++ A+ VF     + V +W+A+I GFA++G A  +++ F +M+++GV P+++ 
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           ++ +L AC H GLV+EG R+F+ M+    LEP  +HYGCMVDLLGR+G+L EAEE I +M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD   W ALLGAC+  G+ EMG+RV   L+++ P   G +V LSN++AS+G W +V 
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           E+R  M  + + K PGCS+I+ +G++HEF+  D +HP+  EI++ML E++ KL+L GY P
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
            T +V  ++++E+KE  L  HSEK+A AFGLI+ SP  PIRI+KNLRIC DCH++ K IS
Sbjct: 558 ITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLIS 617

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + + R+I VRDR RFHHF+ GSCSCMD+W
Sbjct: 618 KVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 250/558 (44%), Gaps = 89/558 (15%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF-STDLLPFIEMSYSFKIFAFL 91
           L   +  C++ +  +QI +  I +G + DT AA+ +++F +T  L   ++ Y+ KIF  +
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICL---YKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
              N F +NT++R + + +  +  I +   Y++M +  V  + +T+P + +A A    + 
Sbjct: 86  PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EGK IH   LK GF  D +V + L+ MY +CG +  AR LF                 Y 
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF-----------------YK 188

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
           N    +       +  +  I+  N MI  + R G+   A  LF +M ++ +VSW+ +IS 
Sbjct: 189 NIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISG 248

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           Y  N  +++A+ +F  M    +  + V +VSVL A + L  ++ G  +H  A   GI   
Sbjct: 249 YSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRID 308

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
             L +ALI MYS CG I  A  +F+     ++I+W                         
Sbjct: 309 DVLGSALIDMYSKCGIIEKAIHVFERLPRENVITW------------------------- 343

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KW 447
                 S MI+G+A H Q  + +  F +M+  G+RP +   +++++AC+H   +++G ++
Sbjct: 344 ------SAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
               +  +GL                               E  +  +  ++     +GL
Sbjct: 398 FSQMVSVDGL-------------------------------EPRIEHYGCMVDLLGRSGL 426

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
            D++ E    M    + P+++ +  +LGACR  G V+ G R  N ++    +  +S  Y 
Sbjct: 427 LDEAEEFILNMP---IKPDDVIWKALLGACRMQGNVEMGKRVANILMD--MVPHDSGAYV 481

Query: 568 CMVDLLGRAGMLKEAEEL 585
            + ++    G   E  E+
Sbjct: 482 ALSNMYASQGNWSEVSEM 499


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/880 (33%), Positives = 463/880 (52%), Gaps = 117/880 (13%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
            S +   L    +  Q  ++ S +I  GL      +++LI        F + + SF +F 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLI---AKYAHFRDPTSSFSVFR 72

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
            L SP  N +++N+++RA     +  +A+ LY       +  D YT+P +  A A  L  
Sbjct: 73  -LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 131

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
              K IHD VL  GF SD+Y+ N LI+MY    DL  ARK+F+E P+ D+VSWNS+++GY
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191

Query: 208 VNAD------------------------------------NVEEAKFIYNKMPE----RN 227
            NA+                                    +VEE   I+  + +    ++
Sbjct: 192 -NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 250

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +I +N ++ ++ +   + +  R+F +M  +D VSW+ +I  Y Q  +YEE++ LFM M++
Sbjct: 251 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 310

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-------YINLQ-------- 332
            +   D + + S+L AC +L  ++ G  VH   +  G EC        IN+         
Sbjct: 311 -QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 333 ----------------NALIHMYSSCGEITTAEKLFDA---------------------- 354
                           N++I++Y   G    A KLF                        
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQL 429

Query: 355 ----------------GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
                           G N +++  N+++  Y KCG +  +  +F+ M  +D+++W+T+I
Sbjct: 430 GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 489

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           +     +  +  L +   M+  G+ PD AT++S++  C+ L A  QGK IH  I K GL+
Sbjct: 490 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 549

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  +G  LI+MY K G + N+ +VF   + K V +W ALI    M G   K++  F EM
Sbjct: 550 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM 609

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + +G+ P+ + FV ++ AC H GLV+EG  +F+ M +++++EP  +HY C+VDLL R+ +
Sbjct: 610 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSAL 669

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L +AE+ I SMP+ PD + WGALL AC+  GD E+ ERV  +++EL PD  G++VL+SNI
Sbjct: 670 LDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNI 729

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A+ G+WD V  +R  +  RG+ K PGCS +E    ++ F  G +   Q  E++ +L  +
Sbjct: 730 YAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGML 789

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           A  +  EGY  +   V  DID++EK   L  HSE+LAIAFGL+   P  P+++MKNLR+C
Sbjct: 790 AGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVC 849

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCHT  K+IS+   RE++VRD +RFH FK G+CSC D+W
Sbjct: 850 EDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 423/746 (56%), Gaps = 60/746 (8%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N++ R+ +Q + P  A          NVG       L  Q ++ +    + K IH  +L+
Sbjct: 118 NSIGRSIVQHSSPTPASAT-----ATNVG----DRALFQQCTSFK----QLKQIHAQMLR 164

Query: 160 AGFDSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
                D Y  + L    A      L  ARK+FD+ P  +L SWN ++     + +  ++ 
Sbjct: 165 TNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSV 224

Query: 218 FIYNKM--------------------PER--------------------NIIASNSMIVL 237
            ++ +M                     ER                    ++   NS+I  
Sbjct: 225 LVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHF 284

Query: 238 FGRKGNVAEACRLFK--EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
           +   G++  A  +F+  E   KD+VSW+++++ + Q    ++AL LF  M +  V  + V
Sbjct: 285 YASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAV 344

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VSV+SACA    +  G  V     +  +   +N+ NA I M+  CGE+  A  LFD  
Sbjct: 345 TMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNM 404

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D++SW ++I GY K      AR +FD+M  KD+ +W+ +ISGY Q  +  E L++F 
Sbjct: 405 EKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFR 464

Query: 416 EMQ--HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           E+Q    G RPD+ TL+S +SAC  L A+D G+WIH YI+K  +++N  L T+LIDMY K
Sbjct: 465 ELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSK 524

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G V+ A+EVFH    K V  W+A+I G AM+G  + ++E+F +M+++ V PN +TF  +
Sbjct: 525 SGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNL 584

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLVDEG R F+ M + + + P +KHY CMVD+LGRAG L+EA + IE MP++P
Sbjct: 585 LCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAP 644

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
             + WGALLGAC  HG+ E+ E+   +L+E++P + G +VLLSN++A  G W+ V E+R 
Sbjct: 645 SASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQ 704

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M   G+ K  GCS IE +G +HEF+ GD  HP   +I   LDE+  +L+  GY  +TL 
Sbjct: 705 QMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLC 764

Query: 714 VAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
           +   +++EE KE  L  HSEK+AIAFGLI       IRI+KNLR+C DCHT AK +S+ +
Sbjct: 765 MLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVY 824

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            R+IV+RDR+RFHHF  G CSC D+W
Sbjct: 825 GRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 252/563 (44%), Gaps = 112/563 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            Q+C SFKQ  QI +QM+ T  + D +AAS L   +     F  + Y+ K+F  +  PN 
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFT-AAAFSSFSALDYARKVFDQIPQPNL 204

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           + +N ++RA    + P Q++ ++  ML+++  G + +T+P+L +A A R     GK +H 
Sbjct: 205 YSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHG 264

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLVSWNSILAGYVNADNV 213
             +K  F  DV+V N+LI+ YA CG L  A  +F+  E    D+VSWNS++ G+V     
Sbjct: 265 MAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYP 324

Query: 214 EEAKFIYNKMPER---------------------------------------NIIASNSM 234
           ++A  ++ +M                                          N+   N+ 
Sbjct: 325 DKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT 384

Query: 235 IVLFGRKGNVAEACRLFKEM-------------------------------PKKDLVSWS 263
           I +F + G V  A  LF  M                               P+KD+ +W+
Sbjct: 385 IDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444

Query: 264 ALISCYEQNEMYEEALVLF--MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
            LIS YEQ+   +EAL +F  + +       D+V ++S LSACA L  +  G  +H    
Sbjct: 445 VLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIK 504

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K  I+   NL  +LI MYS  G++  A ++F +  N D+  W++MI              
Sbjct: 505 KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMI-------------- 550

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
                            +G A H +    + LF++MQ   ++P+  T  +++ AC+H   
Sbjct: 551 -----------------AGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 442 LDQGKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +D+GK +   + R  G+   +   + ++D+  + G ++ AL+   G       S W AL+
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 500 IGFAMNG---LADKSLEMFSEMK 519
               ++G   LA+K+     E++
Sbjct: 654 GACCIHGNLELAEKACSRLLEIE 676


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/765 (35%), Positives = 436/765 (56%), Gaps = 42/765 (5%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           S  Q  Q  + ++ TGL  DT  A++L+    + + F + +    +   +  PN F F+T
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATL---VLDLVPEPNVFSFST 84

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++ A+ + +    A+  +  ML   +  DN   P   +A A   ++   + +H     +G
Sbjct: 85  LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           FDSD +V ++L++MY  C                               + + +A  +++
Sbjct: 145 FDSDSFVQSSLVHMYIKC-------------------------------NQIRDAHRVFD 173

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEE 277
           +M E ++++ ++++  + R+G V EA RLF EM     + +L+SW+ +I+ +  + +Y E
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           A+++F++M       D   + SVL A  +L  +  G  +H   +K G+     + +ALI 
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF----DAMIEKDVVS 393
           MY  C   +   ++FD   ++D+ S N+ I G  + G VE +  LF    D  +E +VVS
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W++MI+  +Q+ +  E L LF EMQ  G++P+  T+  ++ AC ++ AL  GK  H +  
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           + G+  +  +G+ LIDMY K G +  +   F G   K +  WNA+I G+AM+G A +++E
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F  M++SG  P+ I+F  VL AC   GL +EG  +FNSM  ++ +E   +HY CMV LL
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
            RAG L++A  +I  MP++PD   WGALL +C+ H +  +GE    KL EL+P + G ++
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYI 593

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+ASKG W++V  VR MM  +G+ K PGCS IE    +H  LAGD++HPQ+ +I  
Sbjct: 594 LLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIE 653

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            LD+++ ++K  GY P+   V  D+++++KE  L  HSEKLA+ FGL+   P  P++++K
Sbjct: 654 KLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIK 713

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLRIC DCH   KFIS    REI VRD +RFHHFK G+CSC D+W
Sbjct: 714 NLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/616 (44%), Positives = 376/616 (61%), Gaps = 38/616 (6%)

Query: 215 EAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKE-MPKKDLVSWSALISCYEQ 271
           +A+ I + +P  + NIIA    I +    GN+  +  +F   +   ++ +++AL+  + Q
Sbjct: 44  QAQIIASPIPSIDPNIIAVK-FIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQ 102

Query: 272 NEMYEEALVLFMN--MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           +  +   +  F N  ++ +    DE    SVL ACA L  V  G  VH    K G E  +
Sbjct: 103 HNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNL 162

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            ++N+L+ +Y   G    A+KLFD     D++SWN++ISGY   G V+KAR +FD M+EK
Sbjct: 163 FVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEK 222

Query: 390 DVVSWSTMISGYA-------------------------------QHDQFSETLSLFMEMQ 418
           ++VSWSTMISGYA                               Q++++++ + LF +MQ
Sbjct: 223 NLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQ 282

Query: 419 HHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           H G + P++ TLVSV+SAC HL ALD GKWIH +IR+N +++   LG  L DMY K GCV
Sbjct: 283 HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCV 342

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A  VFH   E+ V SW+ +I+G AM G A+++   F+EM + G+ PN+I+F+G+L AC
Sbjct: 343 LEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC 402

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLVD+G  +F+ M Q + + P  +HYGC+VDLL RAG L +AE LI SMPM P+V  
Sbjct: 403 THAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIV 462

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           WGALLG C+ + D E GERV  +++EL  +H G  V L+N++AS GR DD    R  M  
Sbjct: 463 WGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRD 522

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
              +K PGCS IE N  ++EF  GD +HPQ   I +M+ E+  K+K+ GY P T  V  +
Sbjct: 523 NKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHN 582

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ID+EEKE  L  HSEKLA+AFGLI  S    IRI+KNLR+CNDCH A K IS+  +REIV
Sbjct: 583 IDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIV 642

Query: 778 VRDRHRFHHFKHGSCS 793
           VRDR RFHHFK G CS
Sbjct: 643 VRDRSRFHHFKDGKCS 658



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 272/538 (50%), Gaps = 80/538 (14%)

Query: 42  SFKQFTQILSQMILTGL--IADTFAASRLIKFSTDLLPFIEMSYSFKIFA-FLESPNGFI 98
           S +Q  +I +Q+I + +  I     A + I  S+       + +S  IF  FL  PN F 
Sbjct: 36  SMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSS---HGNLRHSVLIFNHFLSFPNIFA 92

Query: 99  FNTMMRAYIQRNVPQQAICLY--KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           +N +++A+ Q N     I  +  +L+L N    D YT+  + +A A    V EG+ +H  
Sbjct: 93  YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V K G +S+++V N+L+++Y   G    A+KLFDE  V D+VSWN++++GY  +  V++A
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + +++ M E+N+++ ++MI  + R GN+ EA +LF+ MP +++VSW+A+I+ Y QNE Y 
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA 272

Query: 277 EALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           +A+ LF  M  +  +  ++V +VSVLSACA+L  +  G  +H    +  IE  + L NAL
Sbjct: 273 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 332

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
             MY+ CG +  A+ +F   H  D+ISW+ +I G           A++            
Sbjct: 333 ADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGL----------AMY------------ 370

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRK 454
               GYA     +E  + F EM   G+ P++ + + +++ACTH   +D+G ++     + 
Sbjct: 371 ----GYA-----NEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV 421

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+       T  I+ Y   GCV + L                     +  G  D++  +
Sbjct: 422 YGI-------TPKIEHY---GCVVDLL---------------------SRAGRLDQAESL 450

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            + M    + PN I +  +LG CR     + G R     +    LE +S H G +V L
Sbjct: 451 INSMP---MQPNVIVWGALLGGCRIYKDAERGER-----VVWRILELDSNHSGSLVYL 500


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/617 (41%), Positives = 372/617 (60%), Gaps = 35/617 (5%)

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAK----FIYNKMPERNIIASNSMIVLFGRK 241
           +K+ ++S   D  +++S+L        + E +     I     + N    N++I ++   
Sbjct: 110 KKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANC 169

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G +  A  +F  MP++ +V+W++++S Y +N +++E + LF  +++ R+  D+V ++SVL
Sbjct: 170 GQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVL 229

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC  L  ++ G  +    V  G+     L  +LI MY+                     
Sbjct: 230 MACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYA--------------------- 268

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                     KCG V+ AR LFD M ++DVV+WS MISGYAQ D+  E L+LF EMQ   
Sbjct: 269 ----------KCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGN 318

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P+E T+VSV+ +C  L A + GKW+H YI+K  +K+   LGT LID Y K G +D ++
Sbjct: 319 VYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSV 378

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           EVF     K V +W ALI G A NG    +LE FS M ++ V PN++TF+GVL AC H  
Sbjct: 379 EVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHAC 438

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           LVD+G   FNSM ++  +EP  +HYGCMVD+LGRAG L+EA + I++MP  P+   W  L
Sbjct: 439 LVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTL 498

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           L +C+ H + EM E+    +  L+P H G ++LLSN +A  GR +D + VR ++  + + 
Sbjct: 499 LASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIK 558

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           KIPGCS+IE +G++HEF + D  H    EI + LD+M K++K  GY P+T +   + ++E
Sbjct: 559 KIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEE 618

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
            KET++  HSEKLAIA+GLI  SP   IRI KNLR+C DCH A KFIS+ F+R I+VRDR
Sbjct: 619 SKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDR 678

Query: 782 HRFHHFKHGSCSCMDFW 798
           +RFHHFK G CSC D+W
Sbjct: 679 NRFHHFKDGLCSCNDYW 695



 Score =  205 bits (522), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 217/458 (47%), Gaps = 71/458 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ+C++ K   Q+ + ++ T  + D      +++ +  LLP   + Y+  IF  ++ P  
Sbjct: 28  LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDT-IDYALSIFNHIDKPES 86

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+R    +  P  A+ L+K M   +V  D +T+  + +A +   ++ EG+ +H  
Sbjct: 87  SAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHAL 146

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE- 215
           +LK+GF S+ +V NTLI MYA CG +  AR +FD  P   +V+WNS+L+GY      +E 
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEV 206

Query: 216 --------------------------------------AKFIYNKMPERNIIASNSMIVL 237
                                                  ++I +K   RN   + S+I +
Sbjct: 207 VKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDM 266

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G V  A +LF EM K+D+V+WSA+IS Y Q +  +EAL LF  M    V  +EV +
Sbjct: 267 YAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTM 326

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VSVL +CA L   + G  VH    K  ++  + L   LI  Y+ CG I  + ++F     
Sbjct: 327 VSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSF 386

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            ++ +W ++I G    G  + A   F +M+E DV                          
Sbjct: 387 KNVFTWTALIQGLANNGEGKMALEFFSSMLENDV-------------------------- 420

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                +P++ T + V+SAC+H   +DQG+ +   +R++
Sbjct: 421 -----KPNDVTFIGVLSACSHACLVDQGRHLFNSMRRD 453


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/752 (35%), Positives = 412/752 (54%), Gaps = 70/752 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +E  +   +   +  Y      + A  +++ M    V  +  TY  +  A +   
Sbjct: 182 EVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPA 241

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK +H  +L AG +SD  V   L+ MYA CG     R++F++    DL++WN+++ 
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
           G       EEA  +YN+M    ++ +                                  
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N++I ++ R G++ +A  +F +M +KD++SW+A+I    ++    EAL ++  M 
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V  + V   S+L+AC++   ++ G  +H   V+ G+    ++ N L++MYS      
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYS------ 475

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                     CGSV+ AR +FD MI++D+V+++ MI GYA H+ 
Sbjct: 476 -------------------------MCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNL 510

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF  +Q  G++PD+ T +++++AC +  +L+  + IH  +RK G   ++ +G  
Sbjct: 511 GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA 570

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+  Y K G   +A  VF    ++ V SWNA+I G A +G    +L++F  MK  GV P+
Sbjct: 571 LVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPD 630

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TFV +L AC H GL++EG R+F SM Q+  + P  +HYGCMVDLLGRAG L EAE LI
Sbjct: 631 IVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALI 690

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           ++MP   +   WGALLGAC+ HG+  + ER     ++L  D+   +V LS+++A+ G WD
Sbjct: 691 KTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWD 750

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
              ++R +M +RGV K PG S I+    +H F+A DR+HPQ  +I   LD +   +K++G
Sbjct: 751 SAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKG 810

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  D+D+ EKE  +  HSE+LAIA+GLI+  P   I I KNLR+C DCHTA K
Sbjct: 811 YVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATK 870

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           FIS+  DREI+ RD +RFHHFK G CSC D+W
Sbjct: 871 FISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/655 (25%), Positives = 305/655 (46%), Gaps = 82/655 (12%)

Query: 28  INLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYS 84
           +N S     L++C   K      Q+   +I    + D +  + LI          E    
Sbjct: 21  VNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQV 80

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +K  +++E      +N M+  YIQ    ++A+ L + M  + +  D  T      +    
Sbjct: 81  WKKLSYMERTV-HSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSP 139

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            ++  G+ IH   ++AG   DV V N ++NMYA CG +  AR++FD+     +VSW   +
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIAS--------------------------------- 231
            GY +    E A  I+ KM +  ++ +                                 
Sbjct: 200 GGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE 259

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                  +++ ++ + G+  +  ++F+++  +DL++W+ +I    +   +EEA  ++  M
Sbjct: 260 SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               VM +++  V +L+AC N   +  G  +H+   K G    I +QNALI MYS CG I
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSI 379

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  +FD     D+ISW +MI G  K G        F A                    
Sbjct: 380 KDARLVFDKMVRKDVISWTAMIGGLAKSG--------FGA-------------------- 411

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E L+++ EMQ  G+ P+  T  S+++AC+   AL+ G+ IH  + + GL  ++ +G 
Sbjct: 412 ---EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN 468

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           TL++MY   G V +A +VF    ++ + ++NA+I G+A + L  ++L++F  +++ G+ P
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 528

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++T++ +L AC + G + E  R  ++++++     ++     +V    + G   +A  +
Sbjct: 529 DKVTYINMLNACANSGSL-EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 586 IESMPMSPDVATWGALLGACKKHGDH----EMGERVGRKLVELQPDHDGFHVLLS 636
            E M    +V +W A++G   +HG      ++ ER+  K+  ++PD   F  LLS
Sbjct: 588 FEKMT-KRNVISWNAIIGGSAQHGRGQDALQLFERM--KMEGVKPDIVTFVSLLS 639



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 259/553 (46%), Gaps = 78/553 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV--SWNSILAGY 207
           G+ +H H+++     D Y  N LINMY  CG +  AR+++ +   ++    SWN+++ GY
Sbjct: 42  GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 208 VNADNVEEAKFIYNKM------PERNIIAS------------------------------ 231
           +    +E+A  +  +M      P+R  I S                              
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              N ++ ++ + G++ EA  +F +M KK +VSW+  I  Y      E A  +F  M   
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE 221

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V+ + +  +SVL+A ++   +K G +VH+  +  G E    +  AL+ MY+ CG     
Sbjct: 222 GVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDC 281

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            ++F+   N DLI+WN+MI G  + G  E+A  +++                        
Sbjct: 282 RQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN------------------------ 317

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
                  +MQ  G+ P++ T V +++AC +  AL  GK IH+ + K G   +  +   LI
Sbjct: 318 -------QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALI 370

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY + G + +A  VF     K V SW A+I G A +G   ++L ++ EM+++GV PN +
Sbjct: 371 SMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRV 430

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+  +L AC     ++ G R  +  + E  L  ++     +V++    G +K+A ++ + 
Sbjct: 431 TYTSILNACSSPAALEWG-RRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDR 489

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWD 646
           M +  D+  + A++G    H   +   ++  +L E  L+PD   +  +L N  A+ G  +
Sbjct: 490 M-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML-NACANSGSLE 547

Query: 647 DVLEVRGMMVRRG 659
              E+   +VR+G
Sbjct: 548 WAREIH-TLVRKG 559


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/880 (32%), Positives = 462/880 (52%), Gaps = 117/880 (13%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
            S +   L    +  Q  ++ S +I  GL      +++LI        F + + SF +F 
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLI---AKYAHFRDPTSSFSVFR 131

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
            L SP  N + +N+++RA     +  +A+ LY       +  D YT+P +  A A  L  
Sbjct: 132 -LASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 190

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
              K IHD VL  GF SD+Y+ N LI+MY    DL  ARK+F+E P+ D+VSWNS+++GY
Sbjct: 191 EMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 250

Query: 208 VNAD------------------------------------NVEEAKFIYNKMPE----RN 227
            NA+                                    +VEE   I+  + +    ++
Sbjct: 251 -NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +I +N ++ ++ +   + +  R+F +M  +D VSW+ +I  Y Q  +YEE++ LFM M++
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 369

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-------YINLQ-------- 332
            +   D + + S+L AC +L  ++ G  VH   +  G EC        IN+         
Sbjct: 370 -QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 333 ----------------NALIHMYSSCGEITTAEKLFDA---------------------- 354
                           N++I++Y   G    A KLF                        
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQL 488

Query: 355 ----------------GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
                           G N +++  N+++  Y KCG +  +  +F+ M  +D+++W+T+I
Sbjct: 489 GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 548

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           +     +  +  L +   M+  G+ PD AT++S++  C+ L A  QGK IH  I K GL+
Sbjct: 549 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 608

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  +G  LI+MY K G + N+ +VF   + K V +W ALI    M G   K++  F EM
Sbjct: 609 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM 668

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + +G+ P+ + FV ++ AC H GLV+EG  +F+ M +++++EP  +HY C+VDLL R+ +
Sbjct: 669 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSAL 728

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L +AE+ I SMP+ PD + WGALL AC+  GD E+ +RV  +++EL PD  G++VL+SN+
Sbjct: 729 LDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNV 788

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A+ G+WD V  +R  +  RG+ K PGCS +E    ++ F  G +   Q  E++ +L  +
Sbjct: 789 YAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGML 848

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           A  +  EGY  +   V  DID++EK   L  HSE+LAIAFGL+   P  P+++MKNLR+C
Sbjct: 849 AGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVC 908

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCHT  K+IS+   RE++VRD +RFH FK G+CSC D+W
Sbjct: 909 EDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/574 (44%), Positives = 363/574 (63%), Gaps = 1/574 (0%)

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           RN   + S++  +   G+ A A  L  E  +   V W+ALIS + +   + EA   F++M
Sbjct: 76  RNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDM 135

Query: 286 IDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
                    V  VSVLSAC   T  V  G  VH   V  G+   + ++NAL+ MY+ C +
Sbjct: 136 ARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECAD 195

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           + +A KLFD      ++SW S++SG  + G V++AR LF  M E+D VSW+ MI GY Q 
Sbjct: 196 MESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQA 255

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
            +F E L +F EMQ   +  DE T+VSVI+AC  L AL+ G+W+  Y+ + G+K+++ +G
Sbjct: 256 ARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 315

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             LIDMY K G ++ AL+VF     +   +W A+I+G A+NG  ++++EMF  M     T
Sbjct: 316 NALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSET 375

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+E+TF+GVL AC H GLVD+G   F SM + + + PN  HYGC++DL GRAG + EA +
Sbjct: 376 PDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALD 435

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            I+ MPM+P+   WG LL AC+ HG+ E+GE V  +L+++ P++   + LLSNI+A   R
Sbjct: 436 AIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNR 495

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W+DV  +R  ++ +G+ K PGCS+IE NGIIHEF+AGD++HP   EI   L+ +   L  
Sbjct: 496 WEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNN 555

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY PD  EV  ++ +EEK+  LF HSEKLAIAF L++  P   IRI+KNLR+C DCH A
Sbjct: 556 VGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNA 615

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K ISR + RE+VVRDR RFHHF+HG CSC D+W
Sbjct: 616 IKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 171/393 (43%), Gaps = 64/393 (16%)

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSVFEG 150
           E     ++N ++  + +     +A C +  M          TY  +L+        V  G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
             +H  V+ +G   D+ V N L++MYA C D+ +A KLF                     
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLF--------------------- 203

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                     + M  R++++  S++    R G V EA  LF  MP++D VSW+A+I  Y 
Sbjct: 204 ----------DGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYV 253

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           Q   + EAL +F  M    V  DE  +VSV++ACA L  ++ G  V     + GI+    
Sbjct: 254 QAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF 313

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NALI MYS CG I  A  +F   H+ D  +W ++I G    G  E+A  +F  MI   
Sbjct: 314 VGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMI--- 370

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                            SET             PDE T + V++ACTH   +D+G+    
Sbjct: 371 ---------------GVSET-------------PDEVTFIGVLTACTHAGLVDKGREFFL 402

Query: 451 YIRKN-GLKINSILGTTLIDMYMKLGCVDNALE 482
            +R+   +  N +    +ID++ + G +  AL+
Sbjct: 403 SMRETYNIAPNVVHYGCIIDLFGRAGKITEALD 435



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 186/418 (44%), Gaps = 47/418 (11%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A RL + +P++ LV+              E+A+  +  M+    M D      +L A A 
Sbjct: 8   ARRLLEGIPRRCLVA------------AREDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
            +      +VHA  VK G+    ++  +L+  Y++ G+   A  L         + WN++
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 367 ISGYLKCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQFSETLSLFMEMQHH-- 420
           ISG+ +C    +A   F  M         V++ +++S   +      T  + + MQ H  
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKG-----TGDVLLGMQVHGR 170

Query: 421 ----GIRPD---EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG-TTLIDMYM 472
               G+ PD   E  LV + + C  + +        A+   +G+++ S++  T+L+    
Sbjct: 171 VVGSGVLPDLRVENALVDMYAECADMES--------AWKLFDGMQVRSVVSWTSLLSGLT 222

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           +LG VD A ++F    E+   SW A+I G+       ++LEMF EM+ S V+ +E T V 
Sbjct: 223 RLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVS 282

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           V+ AC  +G ++ G       +    ++ ++     ++D+  + G ++ A ++ + M   
Sbjct: 283 VITACAQLGALEMGE-WVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQ--PDHDGF-HVLLSNIHAS---KGR 644
            D  TW A++     +G  E    +  +++ +   PD   F  VL +  HA    KGR
Sbjct: 342 -DKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR 398


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/804 (35%), Positives = 434/804 (53%), Gaps = 76/804 (9%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C   K      Q+   ++++G   D F A+ L+        F++   S ++F  +  
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLD---SKRLFDEIPE 220

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +N +   Y+Q +   +A+ L+  M+ + +  + ++   +  A         GK+I
Sbjct: 221 RNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H +++K G+D D +  N L++MYA  GDL+ A  +F++    D+VSWN+++AG V  ++ 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 214 EEAKFIYNKMP---------------------------------------ERNIIASNSM 234
           E+A  +  +M                                        E ++  S  +
Sbjct: 341 EQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGL 400

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++ +   + +A   F  +P+KDL++W+A+IS Y Q     EAL LF+ M    +  ++
Sbjct: 401 VDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQ 460

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             + ++L + A L VV     VH L+VK                               +
Sbjct: 461 TTLSTILKSTAGLQVVHVCRQVHGLSVK-------------------------------S 489

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G + D+   NS+I  Y KC  VE A  +F+     D+VS+++MI+ YAQ+ Q  E L LF
Sbjct: 490 GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLF 549

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
           +EMQ   ++PD     S+++AC +L A +QGK +H +I K G  ++   G +L++MY K 
Sbjct: 550 LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKC 609

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +D+A   F    E+G+ SW+A+I G A +G   ++L++F++M K GV+PN IT V VL
Sbjct: 610 GSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 669

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
           GAC H GLV E   +F SM +    +P  +HY CM+DLLGRAG + EA EL+  MP   +
Sbjct: 670 GACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEAN 729

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + WGALLGA + H D E+G R    L  L+P+  G HVLL+NI+AS G+W++V EVR +
Sbjct: 730 ASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRL 789

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M    V K PG S IE    ++ FL GDR+H +  EI   LDE++  +   GY P     
Sbjct: 790 MRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEID 849

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++Q EKE  L+ HSEKLA+AFGLI      PIR+ KNLR+C DCHTA K+I +   R
Sbjct: 850 LHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSR 909

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFHHFK GSCSC D+W
Sbjct: 910 EIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/647 (22%), Positives = 296/647 (45%), Gaps = 78/647 (12%)

Query: 24  FKPT-INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           F PT ++ S L +     +S +   QI + +  +GL  D    + LI   +    F    
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNF---G 108

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+ K+      P+   ++ ++  Y Q  +   A+  +  M    V  + +T+  + +A +
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +   +  GK +H  V+ +GF+ DV+V NTL+ MYA C +   +++LFDE P  ++VSWN+
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI---------------------------------- 228
           + + YV  D   EA  ++ +M    I                                  
Sbjct: 229 LFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 229 -----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                 ++N+++ ++ + G++A+A  +F+++ + D+VSW+A+I+    +E +E+AL L  
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  +   + S L ACA + + + G  +H+  +K+ +E  + +   L+ MYS C 
Sbjct: 349 QMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +  A   F+     DLI+WN++ISGY +                     W  M      
Sbjct: 409 LLEDARMAFNLLPEKDLIAWNAIISGYSQ--------------------YWEDM------ 442

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
                E LSLF+EM   GI  ++ TL +++ +   L  +   + +H    K+G   +  +
Sbjct: 443 -----EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +LID Y K   V++A  +F       + S+ ++I  +A  G  +++L++F EM+   +
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 557

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+      +L AC ++   ++G +  +  I ++    +      +V++  + G + +A 
Sbjct: 558 KPDRFVCSSLLNACANLSAFEQG-KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAG 616

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
                +     + +W A++G   +HG      ++  ++++  + P+H
Sbjct: 617 RAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 662



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/565 (24%), Positives = 259/565 (45%), Gaps = 79/565 (13%)

Query: 109 RNVPQ-----QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           + VPQ     Q   +  L+   N    + +Y  L        S+  G  IH H+ K+G  
Sbjct: 29  QTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS 88

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            D  + N LIN+Y+ C +   ARKL DES   DLVSW+++++GY        A   +++M
Sbjct: 89  DDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 224 P---------------------------------------ERNIIASNSMIVLFGRKGNV 244
                                                   E ++  +N+++V++ +    
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF 208

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            ++ RLF E+P++++VSW+AL SCY Q +   EA+ LF  M+   +  +E  + S+++AC
Sbjct: 209 LDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC 268

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             L     G  +H   +K+G +      NAL+ MY+  G++  A  +F+     D++SWN
Sbjct: 269 TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWN 328

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           ++I+G +                                H+   + L L  +M+  GI P
Sbjct: 329 AVIAGCV-------------------------------LHEHHEQALELLGQMKRSGICP 357

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +  TL S + AC  +   + G+ +H+ + K  ++ +  +   L+DMY K   +++A   F
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 417

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +   EK + +WNA+I G++      ++L +F EM K G+  N+ T   +L +   + +V 
Sbjct: 418 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 477

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
              R  + +  +     +      ++D  G+   +++AE + E   +  D+ ++ +++ A
Sbjct: 478 VC-RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG-DLVSFTSMITA 535

Query: 605 CKKHGDHEMGERVGRKL--VELQPD 627
             ++G  E   ++  ++  +EL+PD
Sbjct: 536 YAQYGQGEEALKLFLEMQDMELKPD 560



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I    Q  Q  +T ++   +      P   +   ++S C    +L  G  IHA+I K+G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L  +  +   LI++Y K      A ++   + E  + SW+ALI G+A NGL   +L  F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM   GV  NE TF  VL AC  +  +  G +  + ++     E +      +V +  + 
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIG-KQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
               +++ L + +P   +V +W AL  +C    D   GE VG
Sbjct: 206 DEFLDSKRLFDEIP-ERNVVSWNALF-SCYVQIDF-CGEAVG 244


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/740 (36%), Positives = 409/740 (55%), Gaps = 70/740 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++FA +   +   +NTM+  Y       QA+  ++ +       D+++Y  L  A  +  
Sbjct: 128 RLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRP----DSFSYNTLLHALGVSS 183

Query: 146 SVFEGKLIHD---------------------------HVLKAGFDSDVYVNNTLINMYAV 178
           S+ + + + D                           H      + D    N ++  Y  
Sbjct: 184 SLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 243

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238
            G +  AR+LFD     D +SWN+++AGYV    +EEA+ ++NKMP+R++++ N+M+  +
Sbjct: 244 NGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGY 303

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R+G++AEA RLF   P +D+ +W+A++S Y QN M EEA  +F  M D   +       
Sbjct: 304 ARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS------ 357

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
                                             NA++  Y     +  A++LFDA    
Sbjct: 358 ---------------------------------WNAMMAAYVQRRMMEEAKELFDAMPCR 384

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++ SWN+M++GY + G +++ARA+F  M +KD VSW+ M++ Y+Q     ETL LF EM 
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG 444

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G   + +    V+S C  + AL+ G  +H+ + K G  +   +G  L+ MY K G ++
Sbjct: 445 RCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSME 504

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A   F   EE+ V SWN +I G+A +G   ++LE+F  M+K+   P++IT VGVL AC 
Sbjct: 505 EAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACS 564

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H GLV++G  +F SM ++  +    +HY CM+DLLGRAG L EA  L++ MP  PD   W
Sbjct: 565 HSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMW 624

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           GALLGA + H + E+G     K+ EL+P++ G +VLLSNI+AS G+W DV ++R +M  R
Sbjct: 625 GALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHER 684

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
           GV K+PG S IE    +H F  GD  HP+  +I   L+++  ++K  GY   T  V  D+
Sbjct: 685 GVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDV 744

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           ++EEKE  L  HSEKLA+A+G++ I P  PIR++KNLR+C DCHTA K IS    R I++
Sbjct: 745 EEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIIL 804

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF+ GSCSC D+W
Sbjct: 805 RDSNRFHHFRDGSCSCGDYW 824



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 205/457 (44%), Gaps = 67/457 (14%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
           P ++++  N  +  ++ A  V +A+ ++  MP R+    N+M+  +   G + +A   F+
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS------VLSACAN 306
            +P+ D  S++ L+           AL +  ++ D R + DE+ V        ++S+ AN
Sbjct: 163 SIPRPDSFSYNTLL----------HALGVSSSLADVRALFDEMPVKDSVSYNVMISSHAN 212

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
             +V        LA +     +    N ++  Y   G I  A +LFD+    D ISWN++
Sbjct: 213 HGLVSLARHYFDLAPEKDAVSW----NGMLAAYVRNGRIQEARELFDSRTEWDAISWNAL 268

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP-- 424
           ++GY++   +E+A+ +F+ M ++DVVSW+TM+SGYA+    +E   LF       + P  
Sbjct: 269 MAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIR 322

Query: 425 DEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINSILGT------------------ 465
           D  T  +++S       L++ K +  A   KN +  N+++                    
Sbjct: 323 DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMP 382

Query: 466 --------TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
                   T++  Y + G +D A  +F    +K   SW A++  ++  G ++++L++F E
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKE 442

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD-----L 572
           M + G   N   F  VL  C  +  ++ G      M    RL       GC V      +
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECG------MQLHSRLIKAGYGVGCFVGNALLAM 496

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             + G ++EA    E M    DV +W  ++    +HG
Sbjct: 497 YFKCGSMEEAHSAFEEME-ERDVVSWNTMIAGYARHG 532


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/567 (43%), Positives = 354/567 (62%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           NS+I ++   G+V  A  LF  +  K +++W+A+I+ Y +N  ++E + +F  M++ R  
Sbjct: 210 NSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAP 269

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            DEV ++SV +AC  L     G  +   A + G+    NL  AL+ MY+           
Sbjct: 270 FDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYA----------- 318

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCG ++KAR LFD M  +DVV+WS MISGY Q D+  E L
Sbjct: 319 --------------------KCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREAL 358

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           ++F EMQ   + P++ T+VSV+SAC  L AL+ GKW+H+YIR+  L +  ILGT L+D Y
Sbjct: 359 AIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFY 418

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K GC+ +A++ F     +   +W ALI G A NG + ++LE+FS M ++ + P ++TF+
Sbjct: 419 AKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFI 478

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H  LV+EG RHF SM Q++ + P  +HYGCMVDLLGRAG++ EA + I +MP+
Sbjct: 479 GVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPI 538

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+   W ALL AC  H + E+GE   +++V L P H G ++LLSN +AS G+W +   V
Sbjct: 539 EPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMV 598

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M  +GV KIPGCS+IE  G I EF A D  HPQ+ EI   + EM + +K+ GY P+T
Sbjct: 599 RKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNT 658

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            +   D+D+ EK+ ++  HSEKLAIAFGL+   P   IR+ KNLR+C DCH+A K IS+ 
Sbjct: 659 ADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKV 718

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++REI+VRDR+RFHHFK G CSC D+W
Sbjct: 719 YNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 211/465 (45%), Gaps = 79/465 (16%)

Query: 81  MSYSFKIFAFLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLL 137
           +SY+ ++F     P  +   +N ++R++++   P+ A+ L+  ML++  V  D +T    
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            ++ +    +  G+ +  +  K GF  D +V N+LI+MYA CGD+ AA  LF    V  +
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGV 237

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPE-------------------------------- 225
           ++WN+++AGYV   + +E   ++  M E                                
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297

Query: 226 ---------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                    RN+  + +++ ++ + G + +A RLF  M  +D+V+WSA+IS Y Q++   
Sbjct: 298 AEEKGMLRSRNL--ATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCR 355

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL +F  M    V  ++V +VSVLSACA L  ++ G  VH+   +  +   + L  AL+
Sbjct: 356 EALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALV 415

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
             Y+ CG I  A K F++    +  +W ++I G    G   +A  LF +M+E +      
Sbjct: 416 DFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEAN------ 469

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN- 455
                                    I P + T + V+ AC+H   +++G+     + ++ 
Sbjct: 470 -------------------------IEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDY 504

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           G+         ++D+  + G +D A +       E     W AL+
Sbjct: 505 GICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALL 549



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 153/368 (41%), Gaps = 44/368 (11%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+  Y++    ++ + ++K ML      D  T   +A A         G+ I ++  
Sbjct: 240 WNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE 299

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G      +   L++MYA CG+L  AR+LFD     D+V+W+++++GY  +D   EA  
Sbjct: 300 EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALA 359

Query: 219 IYNKM--PERN-------------------------------------IIASNSMIVLFG 239
           I+N+M   E N                                     +I   +++  + 
Sbjct: 360 IFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYA 419

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G + +A + F+ MP ++  +W+ALI     N    EAL LF +M++  +   +V  + 
Sbjct: 420 KCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIG 479

Query: 300 VLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHN 357
           VL AC++  +V+ G     ++    GI   I     ++ +    G I  A +   +    
Sbjct: 480 VLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIE 539

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLF 414
            + + W +++S      +VE        ++  D       I   + YA   Q+     + 
Sbjct: 540 PNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVR 599

Query: 415 MEMQHHGI 422
            EM+  G+
Sbjct: 600 KEMKEKGV 607



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 44/244 (18%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  + ++F  + S +   ++ M+  Y Q +  ++A+ ++  M    V  ++ T   +  
Sbjct: 322 ELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLS 381

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A+  ++  GK +H ++ +      V +   L++ YA CG +  A K F+  PV +  +
Sbjct: 382 ACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT 441

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASN--------------------------- 232
           W +++ G  +     EA  +++ M E NI  ++                           
Sbjct: 442 WTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMT 501

Query: 233 -------------SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
                         M+ L GR G + EA +  + MP + + V W AL+S    ++  E+ 
Sbjct: 502 QDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIG 561

Query: 276 EEAL 279
           EEAL
Sbjct: 562 EEAL 565


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/790 (33%), Positives = 428/790 (54%), Gaps = 73/790 (9%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+ ++ I  G  +D F  S L+          EM  + ++F  +   N   +N ++  + 
Sbjct: 250  QVHAEAIKVGDFSDLFVGSALVDLYAKCG---EMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
            Q    ++ + L+  M  + +    +T   + +  A   ++  G+++H   ++ G + D +
Sbjct: 307  QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 168  VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
            ++  L++MY+ CG    A K+F      D+VSW++I+          EA  ++ +M    
Sbjct: 367  ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 224  --PERNIIAS---------------------------------NSMIVLFGRKGNVAEAC 248
              P +  +AS                                 N+++ ++ + G+V + C
Sbjct: 427  VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 249  RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            R+F+    +DL+SW+AL+S +  NE  +  L +F  M+      +    +S+L +C++L+
Sbjct: 487  RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 309  VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
             V  G  VHA  VK  ++    +  AL+ MY        A+  F                
Sbjct: 547  DVDLGKQVHAQIVKNSLDGNDFVGTALVDMY--------AKNRF---------------- 582

Query: 369  GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
                   +E A  +F+ +I++D+ +W+ +++GYAQ  Q  + +  F++MQ  G++P+E T
Sbjct: 583  -------LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFT 635

Query: 429  LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
            L S +S C+ +  LD G+ +H+   K G   +  + + L+DMY K GCV++A  VF G  
Sbjct: 636  LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 695

Query: 489  EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
             +   SWN +I G++ +G   K+L+ F  M   G  P+E+TF+GVL AC HMGL++EG +
Sbjct: 696  SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755

Query: 549  HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            HFNS+ + + + P  +HY CMVD+LGRAG   E E  IE M ++ +V  W  +LGACK H
Sbjct: 756  HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 815

Query: 609  GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            G+ E GER   KL EL+P+ D  ++LLSN+ A+KG WDDV  VR +M  RGV K PGCS 
Sbjct: 816  GNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSW 875

Query: 669  IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
            +E NG +H FL+ D +HP+I EI   L ++ +KL   GY P+T  V  ++   EK+  LF
Sbjct: 876  VEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLF 935

Query: 729  RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
             HSE+LA+AF L++ S    IRI KNLRIC DCH   K IS   ++E+VVRD + FHHFK
Sbjct: 936  YHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFK 995

Query: 789  HGSCSCMDFW 798
            +GSCSC +FW
Sbjct: 996  NGSCSCQNFW 1005



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/600 (24%), Positives = 279/600 (46%), Gaps = 75/600 (12%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I  Q+I +G+  D+   + L+            +Y+ K+F  +   +   +  ++  ++ 
Sbjct: 150 IHGQVIKSGINPDSHLWNSLVNVYAKCG---SANYACKVFGEIPERDVVSWTALITGFVA 206

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
                 A+ L+  M    V  + +TY    +A ++ L +  GK +H   +K G  SD++V
Sbjct: 207 EGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFV 266

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
            + L+++YA CG++  A ++F   P  + VSWN++L G+    + E+   ++ +M    I
Sbjct: 267 GSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEI 326

Query: 229 ---------------------------------------IASNSMIVLFGRKGNVAEACR 249
                                                    S  ++ ++ + G   +A +
Sbjct: 327 NFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALK 386

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F  +   D+VSWSA+I+C +Q     EA  +F  M    V+ ++  + S++SA  +L  
Sbjct: 387 VFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGD 446

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +  G S+HA   K G E    + NAL+ MY                              
Sbjct: 447 LYYGESIHACVCKYGFEYDNTVCNALVTMY------------------------------ 476

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
            +K GSV+    +F+A   +D++SW+ ++SG+  ++     L +F +M   G  P+  T 
Sbjct: 477 -MKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTF 535

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +S++ +C+ L  +D GK +HA I KN L  N  +GT L+DMY K   +++A  +F+   +
Sbjct: 536 ISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK 595

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + + +W  ++ G+A +G  +K+++ F +M++ GV PNE T    L  C  +  +D G R 
Sbjct: 596 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQ 654

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +SM  +     +      +VD+  + G +++AE + + + +S D  +W  ++    +HG
Sbjct: 655 LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHG 713



 Score =  225 bits (573), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 253/531 (47%), Gaps = 75/531 (14%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  + +  A +  + EGK IH  V+K+G + D ++ N+L+N+YA CG  + A K+F E P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 194 VLDLVSWNSILAGYV---------------NADNVEEAKFIYNKMPE------------- 225
             D+VSW +++ G+V                 + VE  +F Y    +             
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 226 -----------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   ++++ L+ + G +  A R+F  MPK++ VSW+AL++ + Q   
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            E+ L LF  M    +   +  + +VL  CAN   ++AG  VH+LA++IG E    +   
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MYS CG    A K+F    + D++SW                               
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSW------------------------------- 399

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S +I+   Q  Q  E   +F  M+H G+ P++ TL S++SA T L  L  G+ IHA + K
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK 459

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G + ++ +   L+ MYMK+G V +   VF  T  + + SWNAL+ GF  N   D  L +
Sbjct: 460 YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F++M   G  PN  TF+ +L +C  +  VD G +  ++ I ++ L+ N      +VD+  
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLG-KQVHAQIVKNSLDGNDFVGTALVDMYA 578

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           +   L++AE +   + +  D+  W  ++    + G    GE+  +  +++Q
Sbjct: 579 KNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDG---QGEKAVKCFIQMQ 625



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 209/430 (48%), Gaps = 37/430 (8%)

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFK 252
           L  ++ +L    +  ++ E K I+ ++ +  I       NS++ ++ + G+   AC++F 
Sbjct: 128 LRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 187

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           E+P++D+VSW+ALI+ +        A+ LF  M    V  +E    + L AC+    ++ 
Sbjct: 188 EIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEF 247

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VHA A+K+G    + + +AL+ +Y+ CGE+  AE++F      + +SWN++++G+ +
Sbjct: 248 GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQ 307

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G  EK                                L+LF  M    I   + TL +V
Sbjct: 308 MGDAEK-------------------------------VLNLFCRMTGSEINFSKFTLSTV 336

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +  C +   L  G+ +H+   + G +++  +   L+DMY K G   +AL+VF   E+  V
Sbjct: 337 LKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDV 396

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW+A+I      G + ++ E+F  M+ SGV PN+ T   ++ A   +G +  G    ++
Sbjct: 397 VSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGES-IHA 455

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            + ++  E ++     +V +  + G +++   + E+   + D+ +W ALL     +   +
Sbjct: 456 CVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEAT-TNRDLISWNALLSGFHDNETCD 514

Query: 613 MGERVGRKLV 622
            G R+  +++
Sbjct: 515 TGLRIFNQML 524


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/878 (32%), Positives = 462/878 (52%), Gaps = 116/878 (13%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI-KFSTDLLPFIEMSYSFKIFA 89
           S+L+T L   ++  Q   + S +I +GL      + +LI K++    P   +S    +F 
Sbjct: 24  SLLKT-LSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS----VFR 78

Query: 90  FLESPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
            +   N  +++N+++RA     +  QA+  Y  M    +  D +T+P +  + A  L + 
Sbjct: 79  SISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE 138

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            G ++H+H ++ GF+SD+Y+ N LI+MY+   DL  AR +F+E    D VSWNS+++GY 
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198

Query: 209 NADNVEEAKFIYNK------MPE---------------------------------RNII 229
           +    E+A  +Y+K      +P+                                  ++I
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N ++ ++ +   + EA R+F +M  KD V+W+ +I  Y Q   +E ++ LFM+MID  
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGF 318

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D + + S + AC     ++ G  VH   +  G EC     N LI MY+ CG++  A+
Sbjct: 319 V-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQ 377

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----------------------- 386
           ++FD     D ++WNS+I+GY + G  ++    F  M                       
Sbjct: 378 EVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 387 ---------------IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH----------- 420
                           E +++  ++++  YA+  +  + L +F  M  H           
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 421 --------------------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
                               G+ PDEAT++ ++  C+ L    QGK IH YI K+G + N
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESN 557

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             +G  LI+MY K G ++N ++VF   +EK V +W ALI  F M G   K+L+ F +M+ 
Sbjct: 558 VPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMEL 617

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
           SGV P+ + F+  + AC H G+V EG R F+ M  ++ LEP  +HY C+VDLL R+G+L 
Sbjct: 618 SGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLA 677

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           +AEE I SMPM PD + WGALL AC+  G+  + +RV +K++EL  D  G++VL+SNI+A
Sbjct: 678 QAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYA 737

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + G+WD V  VR  M  +G+ K PG S IE    ++ F  GD++  Q +++ ++L+ + +
Sbjct: 738 TLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVR 797

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
            +  EGY  D      D+++++K   L  HSE+LAIAFGL+   P +P+ +MKNLR+C D
Sbjct: 798 LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGD 857

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CHT  K+I++   REI+VRD +RFH FK G+CSC D W
Sbjct: 858 CHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/789 (35%), Positives = 451/789 (57%), Gaps = 82/789 (10%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           ++++G I   F + RL+     L    ++S S   F  ++  + + +N+M+ AY++    
Sbjct: 99  LVVSGKIQSNFISIRLVNLYASLG---DVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHF 155

Query: 113 QQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           ++AI C Y+L+L      D YT+P + +A     ++ +G+ IH  V K GF  DV+V  +
Sbjct: 156 REAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFVAAS 212

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+MY+  G +  AR LFD+ P  D+ SWN++++G +   N  +A  + ++M        
Sbjct: 213 LIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMD 272

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E  +  SN++I ++ + GN+ +A ++F+
Sbjct: 273 SVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQ 332

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           +M  +D+VSW+++I+ YEQN+    A   F  M  + +  D + +VS+ S  A     K 
Sbjct: 333 QMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKN 392

Query: 313 GTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
             SVH   ++ G  +E  + + NA++ MY+                              
Sbjct: 393 SRSVHGFIMRRGWLMEAVV-IGNAVMDMYA------------------------------ 421

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATL 429
            K G ++ A  +F+ +  KDVVSW+T+ISGY Q+   SE + ++  M+    I+ ++ T 
Sbjct: 422 -KLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VS+++A  H+ AL QG  IH ++ K  L ++  +GT LID+Y K G + +A+ +F+    
Sbjct: 481 VSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR 540

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +    WNA+I    ++G  +K+L++F EM+  GV P+ +TF+ +L AC H GLVDEG + 
Sbjct: 541 ESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-KW 599

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F  ++QE+ ++P+ KHYGCMVDLLGRAG L+ A + I+ MP+ PD + WGALLGAC+ HG
Sbjct: 600 FFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHG 659

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+G+    +L E+  ++ G++VLLSNI+A+ G+W+ V +VR +   RG+ K PG S I
Sbjct: 660 NIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSI 719

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E N  +  F  G+++HP+  EI   L  +  K+K  GY PD   V  D++++EKE  L  
Sbjct: 720 EVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTS 779

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSE+LAIAFG+I+  P + IRI KNLR+C DCH A KFISR  +REIVVRD  RFHHFK+
Sbjct: 780 HSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKN 839

Query: 790 GSCSCMDFW 798
           G CSC D+W
Sbjct: 840 GICSCGDYW 848



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 259/544 (47%), Gaps = 84/544 (15%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            K +H  ++ +G     +++  L+N+YA  GD+S +R  FD+    D+ +WNS+++ YV 
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 210 ADNVEEA-----------KF---IYNKMP-----------------------ERNIIASN 232
             +  EA           KF    Y   P                       + ++  + 
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAA 211

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           S+I ++ R G V  A  LF +MP +D+ SW+A+IS   QN    +AL +   M    + +
Sbjct: 212 SLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM 271

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D V V S+L  CA L  +   T +H   +K G+E  + + NALI+MY+  G +  A+K+F
Sbjct: 272 DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVF 331

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 D++SWNS                               +I+ Y Q+D       
Sbjct: 332 QQMFLRDVVSWNS-------------------------------IIAAYEQNDDPVTARG 360

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMY 471
            F +MQ +G+ PD  TLVS+ S           + +H +I + G  + + ++G  ++DMY
Sbjct: 361 FFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITF 530
            KLG +D+A +VF+    K V SWN LI G+  NGLA +++E++  M++   +  N+ T+
Sbjct: 421 AKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           V +L A  H+G + +G R    +I+ + L  +     C++DL G+ G L +A  L   +P
Sbjct: 481 VSILAAYAHVGALQQGMRIHGHLIKTN-LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP 539

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ-----PDHDGFHVLLSNIHAS---- 641
               V  W A++ +C  HG H  GE+  +   E+Q     PDH  F  LLS    S    
Sbjct: 540 RESSVP-WNAII-SC--HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVD 595

Query: 642 KGRW 645
           +G+W
Sbjct: 596 EGKW 599



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 232/512 (45%), Gaps = 76/512 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ CQ+     +I   +   G   D F A+ LI   +    F+ ++ S  +F  +   + 
Sbjct: 182 LKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRF-GFVGIARS--LFDDMPFRDM 238

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+   IQ     QA+ +   M    + +D+ T   +    A    +    LIH +
Sbjct: 239 GSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLY 298

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+K G + +++V+N LINMYA  G+L  A+K+F +  + D+VSWNSI+A Y   D+   A
Sbjct: 299 VIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTA 358

Query: 217 KFIYNKM------PE----------------------------------RNIIASNSMIV 236
           +  + KM      P+                                    ++  N+++ 
Sbjct: 359 RGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMD 418

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEV 295
           ++ + G +  A ++F  +P KD+VSW+ LIS Y QN +  EA+ ++  M + R + +++ 
Sbjct: 419 MYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQG 478

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             VS+L+A A++  ++ G  +H   +K  +                              
Sbjct: 479 TWVSILAAYAHVGALQQGMRIHGHLIKTNL------------------------------ 508

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            +LD+     +I  Y KCG +  A  LF  +  +  V W+ +IS +  H    + L LF 
Sbjct: 509 -HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFR 567

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ  G++PD  T +S++SAC+H   +D+GKW    +++ G+K +      ++D+  + G
Sbjct: 568 EMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAG 627

Query: 476 CVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
            ++ A +           S W AL+    ++G
Sbjct: 628 FLEMAYDFIKDMPLHPDASIWGALLGACRIHG 659



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 161/333 (48%), Gaps = 21/333 (6%)

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWN--------SMISGYLKCGSVEKARALFDAMIEK 389
           ++ SC +   A++L    H L ++S           +++ Y   G V  +R  FD +  K
Sbjct: 82  LFDSCTKTLLAKRL----HALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRK 137

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWI 448
           DV +W++MIS Y ++  F E +  F ++      + D  T   V+ AC  LV    G+ I
Sbjct: 138 DVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRKI 194

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H ++ K G + +  +  +LI MY + G V  A  +F     + + SWNA+I G   NG A
Sbjct: 195 HCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNA 254

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
            ++L++  EM+  G+  + +T   +L  C  +G +       +  + +H LE        
Sbjct: 255 AQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATL-IHLYVIKHGLEFELFVSNA 313

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD--HEMGERVGRKLVELQP 626
           ++++  + G L +A+++ + M +  DV +W +++ A +++ D     G     +L  L+P
Sbjct: 314 LINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           D     V L++I A    + +   V G ++RRG
Sbjct: 373 DLLTL-VSLASIAAQSRDYKNSRSVHGFIMRRG 404


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/568 (44%), Positives = 369/568 (64%), Gaps = 40/568 (7%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           +S+I L+    ++  A +LF     +D+VSW+A+I  Y          V  + M   R++
Sbjct: 234 SSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGY----------VKHVEMGHARMV 283

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D +V   V+S                              N +I+ Y+  G+I  A++L
Sbjct: 284 FDRMVCRDVIS-----------------------------WNTMINGYAIVGKIDEAKRL 314

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     +L+SWNSM++G++KCG+VE A  LF  M  +DVVSW++M++ YAQ  + +E L
Sbjct: 315 FDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL 374

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           +LF +M+  G++P EAT+VS++SAC HL ALD+G  +H YI  N +++NSI+GT L+DMY
Sbjct: 375 ALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMY 434

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A +VF+  E K V +WN +I G A++G   ++ ++F EMK++GV PN+ITFV
Sbjct: 435 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFV 494

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L AC H G+VDEG +  + M   + +EP  +HYGC++DLL RAG L+EA ELI +MPM
Sbjct: 495 AILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPM 554

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+ +  GALLG C+ HG+ E+GE VG++L+ LQP H G ++LLSNI+A+  +WDD  +V
Sbjct: 555 EPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 614

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPD 710
           R +M   G+ K+PG S+IE  G++H F+AGD +HP+ N+I   L+E+  +LK   GY+ D
Sbjct: 615 RNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSAD 674

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  D+++E+KE  L  HSEKLAIA+GL+ +     IRI+KNLR+C DCH   K IS+
Sbjct: 675 TGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISK 734

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            + REI+VRDR+RFHHF+ G CSC+DFW
Sbjct: 735 VYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/399 (19%), Positives = 169/399 (42%), Gaps = 60/399 (15%)

Query: 2   TLATKLAHLSSTIKSSVNAKPIFKPTINLSILETHL------QKCQ--SFKQFTQIL-SQ 52
           +L   L    S+ K+ + A P++   +   +   H+      + C   S   F  ++ + 
Sbjct: 161 SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTH 220

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           ++ +G   D++  S LI    +     ++  + ++F    + +   +N M+  Y++    
Sbjct: 221 VVKSGFECDSYIVSSLIHLYAN---GKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEM 277

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
             A    +++ +  V  D  ++  +    A+   + E K + D +     + ++   N++
Sbjct: 278 GHA----RMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMP----ERNLVSWNSM 329

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-------- 224
           +  +  CG++  A  LF E P  D+VSWNS+LA Y       EA  ++++M         
Sbjct: 330 LAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 389

Query: 225 -------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKE 253
                                          E N I   +++ ++ + G ++ A ++F  
Sbjct: 390 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 449

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M  KD+++W+ +I+    +   +EA  LF  M +  V  +++  V++LSAC++  +V  G
Sbjct: 450 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEG 509

Query: 314 TS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
              +  ++   GIE  +     +I + +  G +  A +L
Sbjct: 510 QKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMEL 548


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/709 (37%), Positives = 417/709 (58%), Gaps = 38/709 (5%)

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYTYPLL 137
           + + Y+  +F  +  P+ F+F+T +RA  +    P +   L++ M    V  D +T+  L
Sbjct: 51  LHLRYALHLFDRM-PPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFL 109

Query: 138 AQASALRL---SVFEGKLIHDHVLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESP 193
            + S+      S+    ++H   L+    S   +V+N+LI+MY   G  + AR+ FDE  
Sbjct: 110 FKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIH 169

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           V D V+W  +++G                                 + G + +   L  +
Sbjct: 170 VKDAVAWTMLISG-------------------------------LAKMGMLCDTQLLLSQ 198

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
            P +D++SW++LI+ Y +     EA+  F  M+ H +  DEV V++VLSACA L  ++ G
Sbjct: 199 APVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELG 258

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLK 372
            S+H L  + G+    NL  ALI MY+ CG+   A+++FDA G      SWN++I GY K
Sbjct: 259 RSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK 318

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G V+ AR+LFD M  +D++++++M++GY    Q  E L LFM M+ H +R D  T+V++
Sbjct: 319 HGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNL 378

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           ++AC  L AL QG+ +HA I +  ++ +  LGT L+DMYMK G VD A  VF    ++ V
Sbjct: 379 LTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDV 438

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +W A+I G A NG+   +LE F +M+  G  PN ++++ VL AC H  L++EG  +F+ 
Sbjct: 439 HTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDE 498

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M   + + P  +HYGCM+DLLGR+G+L EA +L+++MP+ P+   W ++L AC+ H   +
Sbjct: 499 MRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHID 558

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           + +     L++L+PD DG +V L NI+    +W++  ++R +M  R V K  G S I   
Sbjct: 559 LAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVA 618

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G +H+F+  D++HP+I EI  ML+E++ +LK  GY+P T ++  D+D+EEKE  L  HSE
Sbjct: 619 GQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSE 678

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           KLAIAFGLI ++P  P+ I KNLR+C DCH+A K ISR ++REI+VRDR
Sbjct: 679 KLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDR 727


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/803 (34%), Positives = 435/803 (54%), Gaps = 78/803 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C S K+   IL  +   GL  +    ++L+        +  +  + ++F  ++    
Sbjct: 44  LERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSL---FCRYGSVDEAARVFEPIDKKLN 100

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASALRLSVFEGKLIH 154
            ++ TM++ + + +   +A+  +  M ++ V   V N+TY L        L V  GK IH
Sbjct: 101 VLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRV--GKEIH 158

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             ++K+GF  D++    L NMYA C  +  ARK+FD  P  DLVSWN+I+AGY       
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
            A  + N M E N+  S                                        +++
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALV 278

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G++  A  LF  M ++++VSW+++I  Y QNE  +EA+V+F  M+D  V   +V
Sbjct: 279 DMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDV 338

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            V+  L ACA+L  ++ G  +H L+V++ ++                             
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELELD----------------------------- 369

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            N+ ++  NS+IS Y KC  V+ A ++F  +  + +VSW+ MI G+AQ+ +  E L+ F 
Sbjct: 370 RNVSVV--NSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFS 427

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +MQ   ++PD  T VSVI+A   L      KWIH  + +N L  N  + T L+DMY K G
Sbjct: 428 QMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCG 487

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A  +F    E+ V++WNA+I G+  +G+   +LE+F EM+K  + PN +TF+ V+ 
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVIS 547

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV+ G + F+ M + + +EP+  HYG MVDLLGRAG L EA + I  MP+ P V
Sbjct: 548 ACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             +GA+LGAC+ H +    E+V  +L EL P+  G+HVLL+NI+ +   W+ V +VR  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
           +R+G+ K PGCSM+E    +H F +G   HP   +I   L+++  ++K  GY PDT  + 
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDT-NLI 726

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
             ++ + KE  L  HSEKLAI+FGL+  +    I + KNLR+C DCH A K+IS    RE
Sbjct: 727 LGLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I+VRD  RFHHFK+G+CSC D+W
Sbjct: 787 IIVRDMQRFHHFKNGACSCGDYW 809


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/752 (35%), Positives = 423/752 (56%), Gaps = 72/752 (9%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  L     F++N M+  Y       ++I L+K ML   +  ++YT+  + +  A    
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V EG+ +H  + K GF+S   V N+LI+ Y V   +  A+KLFDE    D++SWNS+++G
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 207 YVNADNVEEAKFIYNKMP----------------------------------------ER 226
           YV     +    I+ KM                                         +R
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +  +N+++ ++ + G++  A R+F+ M +K +VSW+++I+ Y +  + + A+ LF  M 
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V+ D   V S+L+ACA    +K+G  VH    +  +E    + NAL  MY+      
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYA------ 500

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCGS++ A  +F  M +KDV+SW+TMI GY ++  
Sbjct: 501 -------------------------KCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSL 535

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E L+LF EMQ    +PD  T+  ++ AC  L ALD+G+ IH Y  +NG   +  +   
Sbjct: 536 PNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNA 594

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           ++DMY+K G +  A  +F     K + SW  +I G+ M+G   +++  F++M+ +G+ P+
Sbjct: 595 VVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPD 654

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E++F+ +L AC H GL+DEG + FN M +E ++EPN +HY CMVDLL R G L +A + I
Sbjct: 655 EVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFI 714

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           ++MP+ PD   WGALL  C+ H D ++ E+V  ++ EL+P++ G++VLL+NI+A   +W+
Sbjct: 715 KAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWE 774

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V ++R  + +RG+ K PGCS IE  G I+ F+AGD + PQ  +I+ +L  +  K+K EG
Sbjct: 775 EVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEG 834

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y+P T     + D+ EKE  L  HSEKLA+AFG++ + P   IR+ KNLR+C DCH  AK
Sbjct: 835 YSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAK 894

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F+S++  REI++RD  RFHHFK GSCSC  +W
Sbjct: 895 FMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 247/531 (46%), Gaps = 78/531 (14%)

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
           L  + N   D   Y  + Q  A R S+ +G+ +   +  +G   D  +   L+ MY  CG
Sbjct: 140 LCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCG 199

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI------------ 228
           DL   R +FD+     +  WN +++ Y  + N  E+  ++ +M E  I            
Sbjct: 200 DLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILK 259

Query: 229 ---------------------------IASNSMIVLF--GRKGNVAEACRLFKEMPKKDL 259
                                         NS+I  +  GRK   A+  +LF E+  +D+
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ--KLFDELTDRDV 317

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           +SW+++IS Y +N + +  + +F+ M+   V +D   +V+V  ACAN+  +  G  +H+ 
Sbjct: 318 ISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSY 377

Query: 320 AVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           ++K   ++  +   N L+ MYS CG++ +A ++F+      ++SW SMI+GY++ G  + 
Sbjct: 378 SIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDG 437

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A  LFD                               EM+  G+ PD   + S+++AC  
Sbjct: 438 AIKLFD-------------------------------EMKSRGVVPDVYAVTSILNACAI 466

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
              L  GK +H YIR+N L+ NS +   L DMY K G + +A +VF   ++K V SWN +
Sbjct: 467 NGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTM 526

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+  N L +++L +F+EM++    P+  T   +L AC  +  +D+G R  +     + 
Sbjct: 527 IGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG-REIHGYALRNG 584

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
              +      +VD+  + G+L  A  L + +P + D+ +W  ++     HG
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHG 634



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 231/488 (47%), Gaps = 42/488 (8%)

Query: 180 GDLSAARKLF--DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----IASNS 233
           GDL  A +L    ++   DL ++ SIL       ++ + + + + +    +    I    
Sbjct: 131 GDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVK 190

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ ++ + G++ E   +F ++ +  +  W+ +IS Y  +  Y E++ LF  M++  +  +
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
                S+L   A +  V+ G  VH L  K+G   Y  + N+LI  Y    ++  A+KLFD
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              + D+ISWNSMISGY+K G       L D  IE                        +
Sbjct: 311 ELTDRDVISWNSMISGYVKNG-------LDDRGIE------------------------I 339

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTTLIDMYM 472
           F++M   G+  D AT+V+V  AC ++  L  GK +H+Y I+   L        TL+DMY 
Sbjct: 340 FIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYS 399

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +++A+ VF   +EK V SW ++I G+   GL+D ++++F EMK  GV P+      
Sbjct: 400 KCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC   G +  G +  +  I+E+ LE NS     + D+  + G +K+A ++   M   
Sbjct: 460 ILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-K 517

Query: 593 PDVATWGALLGACKKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            DV +W  ++G   K+   +E          E +PD      +L    AS    D   E+
Sbjct: 518 KDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPAC-ASLAALDKGREI 576

Query: 652 RGMMVRRG 659
            G  +R G
Sbjct: 577 HGYALRNG 584



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 221/480 (46%), Gaps = 79/480 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L   +   +N+M+  Y++  +  + I ++  ML   V +D  T   +  A A   
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366

Query: 146 SVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           ++  GK++H + +KA   D +V  NNTL++MY+ CGDL++A ++F+      +VSW S++
Sbjct: 367 TLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMI 426

Query: 205 AGYV-------------------------------NA----DNVEEAKFIYNKMPERNI- 228
            GYV                               NA     N++  K +++ + E N+ 
Sbjct: 427 TGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLE 486

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                SN++  ++ + G++ +A  +F  M KKD++SW+ +I  Y +N +  EAL LF  M
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM 546

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                  D   V  +L ACA+L  +  G  +H  A++ G      + NA++ MY  CG +
Sbjct: 547 -QRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLL 605

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  LFD   N DL+SW  MI                               +GY  H 
Sbjct: 606 VLARSLFDMIPNKDLVSWTVMI-------------------------------AGYGMHG 634

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG- 464
             SE ++ F +M+  GI PDE + +S++ AC+H   LD+G W    I K   +I   L  
Sbjct: 635 YGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEG-WKIFNIMKKECQIEPNLEH 693

Query: 465 -TTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMN---GLADKSLEMFSEMK 519
              ++D+  + G +  A +       K  ++ W AL+ G  ++    LA+K  E   E++
Sbjct: 694 YACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELE 753



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 188/415 (45%), Gaps = 65/415 (15%)

Query: 67  RLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           R ++F+  LL       +++ + ++F  ++      + +M+  Y++  +   AI L+  M
Sbjct: 386 REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
            +  V  D Y    +  A A+  ++  GK++HD++ +   +++ +V+N L +MYA CG +
Sbjct: 446 KSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSM 505

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-----PERNIIA------- 230
             A  +F      D++SWN+++ GY       EA  ++ +M     P+   +A       
Sbjct: 506 KDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACA 565

Query: 231 --------------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                     +N+++ ++ + G +  A  LF  +P KDLVSW+ 
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+ Y  +    EA+  F  M    +  DEV  +S+L AC++  ++  G  +  +  K  
Sbjct: 626 MIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKK-- 683

Query: 325 IECYI--NLQN--ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS----- 375
            EC I  NL++   ++ + +  G +  A K   A      I  ++ I G L CG      
Sbjct: 684 -ECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMP----IKPDATIWGALLCGCRIHHD 738

Query: 376 ---VEK-ARALFDAMIEKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPD 425
               EK A  +F+  +E +   +  +++  YA+ +++ E   L  ++   G++ +
Sbjct: 739 VKLAEKVAERIFE--LEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKN 791


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/844 (34%), Positives = 462/844 (54%), Gaps = 91/844 (10%)

Query: 6   KLAHLSSTIK--SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQ---ILSQMILTGLIA 60
           +L H  ST+   +  NA P      +L+     L+ C  F+ F     +  +++ +GL  
Sbjct: 6   RLHHAFSTLDLMTQQNAPP------DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL 59

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLY 119
           D+   + LI   +      +   +  IF  + +    + ++ M+  +   ++  QAI  +
Sbjct: 60  DSVVLNTLISLYSKCG---DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTF 116

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAV 178
             ML      + Y +  + +A +     + G++I+  V+K G+ ++DV V   LI+M+  
Sbjct: 117 LDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVK 176

Query: 179 -CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER----- 226
             GDL +A K+FD+ P  +LV+W  ++  +       +A  ++  M      P+R     
Sbjct: 177 GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSS 236

Query: 227 ----------------------------NIIASNSMIVLFGR---KGNVAEACRLFKEMP 255
                                       ++    S++ ++ +    G+V ++ ++F++MP
Sbjct: 237 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 296

Query: 256 KKDLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           + +++SW+A+I+ Y Q+ E  +EA+ LF  MI   +  +     SVL AC NL+    G 
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            V++ AVK+GI                               +++ +  NS+IS Y + G
Sbjct: 357 QVYSYAVKLGIA------------------------------SVNCVG-NSLISMYARSG 385

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            +E AR  FD + EK++VS++ ++ GYA++ +  E   LF E+   GI     T  S++S
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 445

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
               + A+ +G+ IH  + K G K N  +   LI MY + G ++ A +VF+  E++ V S
Sbjct: 446 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 505

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W ++I GFA +G A ++LEMF +M ++G  PNEIT+V VL AC H+G++ EG +HFNSM 
Sbjct: 506 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 565

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +EH + P  +HY CMVDLLGR+G+L EA E I SMP+  D   W  LLGAC+ HG+ E+G
Sbjct: 566 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 625

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
                 ++E +PD    ++LLSN+HAS G+W DV+++R  M  R ++K  GCS IE    
Sbjct: 626 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 685

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +H F  G+ +HPQ  +I   LD++A K+K  GY PDT  V  DI++E+KE  LF+HSEK+
Sbjct: 686 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 745

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AFGLI+ S   PIRI KNLR+C DCHTA K+IS A  REIVVRD +RFHH K+G CSC
Sbjct: 746 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSC 805

Query: 795 MDFW 798
            D+W
Sbjct: 806 NDYW 809


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/563 (45%), Positives = 365/563 (64%), Gaps = 8/563 (1%)

Query: 243 NVAEACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDH--RVMVDEVVVVS 299
           N++ A  +F + P     + W+ +I  Y +    +E+L LF  M+ H      D+     
Sbjct: 102 NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTF 161

Query: 300 VLSACANLTVVKA-GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           V +AC+    ++  G +VH + VK G E  I + N+L++MYS    +  A+++FD     
Sbjct: 162 VFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR 221

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D+I+W S++ GY   G + +AR LFD M  ++ VSW+ M++GY  H  ++E L  F +M 
Sbjct: 222 DVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDML 281

Query: 419 -HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
            H  ++P+EA LVS++SAC HL ALDQGKWIH YI KN + ++S + T LIDMY K G +
Sbjct: 282 CHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRI 341

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           D A  VF G  ++ + +W ++I G +M+GL  + L  FSEM   G  P++IT +GVL  C
Sbjct: 342 DCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGC 401

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLV+EG   F+ MI    + P  +HYGC++DLLGRAG L+ A E I+SMPM PDV  
Sbjct: 402 SHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVA 461

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQP-DHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
           W ALL AC+ HGD ++GER+   + EL P  H G +VLLSN++AS G+W+ V +VR  M 
Sbjct: 462 WRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMS 521

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVA 715
           +RG    PGCS IE +G++HEFLA D+ HP+I+EI+  L+E+ +++ +E GY P T +V 
Sbjct: 522 QRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVL 581

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
           FD+++E+KE  +  HSEKLA+AFGL++ +    IRI KNLR C DCH+A K IS  F+RE
Sbjct: 582 FDLNEEDKEQAVSWHSEKLAVAFGLLS-TQEGTIRITKNLRTCEDCHSAMKTISLVFNRE 640

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IVVRDR RFH F++G+CSC D+W
Sbjct: 641 IVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 237/508 (46%), Gaps = 79/508 (15%)

Query: 16  SSVNAKPIFKPTINLSI-LETH------LQKCQSFKQFTQILSQMILTGLIADTFAASRL 68
           SS  +  I++P+   S  L +H      L+K  S  Q  QI +Q++  GL  +T     L
Sbjct: 34  SSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPL 93

Query: 69  IKFSTDLLPFIEMSYSFKIF-AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN- 126
           I      +    +S++  +F  F   P   I+N M++AY +    Q+++ L+  ML +  
Sbjct: 94  IH---SYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGR 150

Query: 127 -VGVDNYTYPLLAQASALRLSVF-EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
               D YT+  +  A +   ++   G+ +H  V+K G++SD++V N+L+NMY++   +  
Sbjct: 151 PTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVD 210

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNV 244
           A+++FDE P  D+++W S++ GY     +  A+ +++ MP RN                 
Sbjct: 211 AKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRND---------------- 254

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSA 303
                          VSW+ +++ Y  +  Y EAL  F +M+ H  V  +E V+VS+LSA
Sbjct: 255 ---------------VSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSA 299

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA+L  +  G  +H    K  I    N+  ALI MY+ CG I  A ++FD  H  DL++W
Sbjct: 300 CAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTW 359

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            S                               MISG + H   +E L  F EM   G +
Sbjct: 360 TS-------------------------------MISGLSMHGLGAECLWTFSEMLAEGFK 388

Query: 424 PDEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           PD+ TL+ V++ C+H   +++G  I H  I   G+         LID+  + G +++A E
Sbjct: 389 PDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFE 448

Query: 483 VFHGTE-EKGVSSWNALIIGFAMNGLAD 509
                  E  V +W AL+    ++G  D
Sbjct: 449 AIKSMPMEPDVVAWRALLSACRIHGDVD 476



 Score = 43.1 bits (100), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 15/211 (7%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P  +T V ++     L  + Q   IHA +  +GL  N+ L   LI  Y+    +  A  V
Sbjct: 53  PSHSTFVQLLKKRPSLTQIKQ---IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 484 FHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG--VTPNEITFVGVLGAC-RH 539
           F           WN +I  ++    + +SL +F +M   G   + ++ TF  V  AC RH
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRH 169

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
             L   G  + + M+ +   E +      +V++      + +A+ + + MP   DV TW 
Sbjct: 170 PTLRGYG-ENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR-DVITWT 227

Query: 600 ALLGACKKHGDHEMGERV-GRKLVELQPDHD 629
           +++      G    GE V  R+L ++ P  +
Sbjct: 228 SVV-----KGYAMRGELVRARELFDMMPGRN 253


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/844 (34%), Positives = 462/844 (54%), Gaps = 91/844 (10%)

Query: 6   KLAHLSSTIK--SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQ---ILSQMILTGLIA 60
           +L H  ST+   +  NA P      +L+     L+ C  F+ F     +  +++ +GL  
Sbjct: 24  RLHHAFSTLDLMTQQNAPP------DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL 77

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLY 119
           D+   + LI   +      +   +  IF  + +    + ++ M+  +   ++  QAI  +
Sbjct: 78  DSVVLNTLISLYSKCG---DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTF 134

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAV 178
             ML      + Y +  + +A +     + G++I+  V+K G+ ++DV V   LI+M+  
Sbjct: 135 LDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVK 194

Query: 179 -CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER----- 226
             GDL +A K+FD+ P  +LV+W  ++  +       +A  ++  M      P+R     
Sbjct: 195 GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSS 254

Query: 227 ----------------------------NIIASNSMIVLFGR---KGNVAEACRLFKEMP 255
                                       ++    S++ ++ +    G+V ++ ++F++MP
Sbjct: 255 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 314

Query: 256 KKDLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           + +++SW+A+I+ Y Q+ E  +EA+ LF  MI   +  +     SVL AC NL+    G 
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 374

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            V++ AVK+GI                               +++ +  NS+IS Y + G
Sbjct: 375 QVYSYAVKLGIA------------------------------SVNCVG-NSLISMYARSG 403

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            +E AR  FD + EK++VS++ ++ GYA++ +  E   LF E+   GI     T  S++S
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 463

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
               + A+ +G+ IH  + K G K N  +   LI MY + G ++ A +VF+  E++ V S
Sbjct: 464 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 523

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W ++I GFA +G A ++LEMF +M ++G  PNEIT+V VL AC H+G++ EG +HFNSM 
Sbjct: 524 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 583

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +EH + P  +HY CMVDLLGR+G+L EA E I SMP+  D   W  LLGAC+ HG+ E+G
Sbjct: 584 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 643

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
                 ++E +PD    ++LLSN+HAS G+W DV+++R  M  R ++K  GCS IE    
Sbjct: 644 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 703

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +H F  G+ +HPQ  +I   LD++A K+K  GY PDT  V  DI++E+KE  LF+HSEK+
Sbjct: 704 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 763

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AFGLI+ S   PIRI KNLR+C DCHTA K+IS A  REIVVRD +RFHH K+G CSC
Sbjct: 764 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSC 823

Query: 795 MDFW 798
            D+W
Sbjct: 824 NDYW 827


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/803 (34%), Positives = 436/803 (54%), Gaps = 78/803 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C S K+  QIL  +   GL  + F  ++L+        +  +  + ++F  ++S   
Sbjct: 44  LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSL---FCRYGSVDEAARVFEPIDSKLN 100

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASALRLSVFEGKLIH 154
            +++TM++ + + +   +A+  +  M  ++V   V N+TY L        L V  GK IH
Sbjct: 101 VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV--GKEIH 158

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             ++K+GF  D++    L NMYA C  ++ ARK+FD  P  DLVSWN+I+AGY       
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
            A  +   M E N+  S                                        +++
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALV 278

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G++  A +LF  M ++++VSW+++I  Y QNE  +EA+++F  M+D  V   +V
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            V+  L ACA+L  ++ G  +H L+V++G++                             
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLD----------------------------- 369

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            N+ ++  NS+IS Y KC  V+ A ++F  +  + +VSW+ MI G+AQ+ +  + L+ F 
Sbjct: 370 RNVSVV--NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M+   ++PD  T VSVI+A   L      KWIH  + ++ L  N  + T L+DMY K G
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A  +F    E+ V++WNA+I G+  +G    +LE+F EM+K  + PN +TF+ V+ 
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV+ G + F  M + + +E +  HYG MVDLLGRAG L EA + I  MP+ P V
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             +GA+LGAC+ H +    E+   +L EL PD  G+HVLL+NI+ +   W+ V +VR  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
           +R+G+ K PGCSM+E    +H F +G   HP   +I   L+++   +K  GY PDT  + 
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLV 726

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
             ++ + KE  L  HSEKLAI+FGL+  +    I + KNLR+C DCH A K+IS    RE
Sbjct: 727 LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IVVRD  RFHHFK+G+CSC D+W
Sbjct: 787 IVVRDMQRFHHFKNGACSCGDYW 809



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 25/206 (12%)

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++  C+ L  L Q   I   + KNGL       T L+ ++ + G VD A  VF   + K 
Sbjct: 43  LLERCSSLKELRQ---ILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
              ++ ++ GFA     DK+L+ F  M+   V P    F  +L  C      DE      
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG-----DEAELRVG 154

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGM---------LKEAEELIESMPMSPDVATWGALL 602
             I  H L   S   G  +DL    G+         + EA ++ + MP   D+ +W  ++
Sbjct: 155 KEI--HGLLVKS---GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIV 208

Query: 603 GACKKHGDHEMGERVGRKLVE--LQP 626
               ++G   M   + + + E  L+P
Sbjct: 209 AGYSQNGMARMALEMVKSMCEENLKP 234


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/521 (44%), Positives = 343/521 (65%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           +++LF+ M    +  +      +   C+N      G   H + +K   E  + ++N++I 
Sbjct: 76  SVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIR 135

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            YS CG +  A  +FD    LD++SWNSMI G ++ G++ +A +LF  M E++ +SW+ M
Sbjct: 136 FYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMM 195

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           ISGYAQ+ Q  E L+LF EMQ     P+ A LVSV+SAC+ L ALD G W+H YI K  +
Sbjct: 196 ISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCV 255

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +++SIL   LIDMY K G +D A++ F  + ++ VS++ A I G AMNG ++++L++F +
Sbjct: 256 RVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQ 315

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           MK  G++P+ ++++ VL AC H G V++G  +F SM   H + P   HY CMVDLLGRAG
Sbjct: 316 MKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAG 375

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
           +L+EAE+ + SMP+ PD   WGALLGAC+ +G+ EMG+RVG  LVE   +HDG ++LLSN
Sbjct: 376 LLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSN 435

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+A   + +D  +VR  M RR V ++PGCS+IE  G +HEF +GDR+H +  EI  M +E
Sbjct: 436 IYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEE 495

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           + K++K  GY  +T  V FD+++EEKE  +  HSEKLA+AFG +     + +RI+KN+RI
Sbjct: 496 IVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRI 555

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C+DCH A K +S+ F R+I +RDR  FHHF+ G CSC D+W
Sbjct: 556 CSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 224/510 (43%), Gaps = 102/510 (20%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG-FIFNTM 102
           KQF +  +Q+I+ GL     +   +I FS  L P  ++ Y+  +     +P   F+FNT 
Sbjct: 2   KQFKEAHTQLIINGLTHPPPSLRPIISFSA-LDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 103 MRAYIQRNVPQQ---AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           +R + +   P     ++ L+  M   ++  +N+T+  L Q  +  ++   G+  H  V+K
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
             F+ DV+V N++I  Y+VCG L+ AR +FDES  LD+VSWNS++ G +   N+ EA  +
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           ++KM ERN I+ N MI  + + G   EA  LF+E                          
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFRE-------------------------- 214

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
              M M+D     +  ++VSVLSAC+ L  +  G  VH    K  +     L  ALI MY
Sbjct: 215 ---MQMLDQE--PNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMY 269

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           + CG I  A + F      D+ ++ + ISG    G  E                      
Sbjct: 270 AKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSE---------------------- 307

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-NGLK 458
                    E L LF +M+  GI PD  + ++V+ AC+H   +++G    A +   +G++
Sbjct: 308 ---------EALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIR 358

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                   ++D+  + G ++ A        EK V+S                        
Sbjct: 359 PELDHYACMVDLLGRAGLLEEA--------EKFVASMP---------------------- 388

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
               + P+ + +  +LGACR  G  + G R
Sbjct: 389 ----IKPDNVIWGALLGACRVYGNAEMGQR 414


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/575 (42%), Positives = 364/575 (63%), Gaps = 19/575 (3%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSV 300
           ++  A  +F ++P+++  +W+ +I +  E  + + +AL++F  M+ +  V  ++    SV
Sbjct: 64  DIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSV 123

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-------- 352
           L ACA +  +  G  VH L +K G+     +   L+ MY  CG +  A  LF        
Sbjct: 124 LKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVD 183

Query: 353 --------DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                   + G   +++  N M+ GY + G+++ AR LFD M ++ VVSW+ MISGYAQ+
Sbjct: 184 DVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQN 243

Query: 405 DQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             + E + +F  M   G + P+  TLVSV+ A + L  L+ GKW+H Y  KN ++I+ +L
Sbjct: 244 GFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVL 303

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           G+ L+DMY K G ++ A++VF    +  V +WNA+I G AM+G A+      S M+K G+
Sbjct: 304 GSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGI 363

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           +P+++T++ +L AC H GLVDEG   FN M+    L+P  +HYGCMVDLLGRAG L+EAE
Sbjct: 364 SPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAE 423

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           ELI +MPM PD   W ALLGA K H + ++G R    L+++ P   G +V LSN++AS G
Sbjct: 424 ELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSG 483

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
            WD V  VR MM    + K PGCS IE +G+IHEFL  D +H +  +I +ML+E++ KL 
Sbjct: 484 NWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLS 543

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
           LEG+ PDT +V   +D++ KE+ L  HSEK+A+AFGLI+  P  P+ I+KNLRIC DCH+
Sbjct: 544 LEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHS 603

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + K IS+ ++R+IV+RDR RFHHF+HGSCSCMD+W
Sbjct: 604 SMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 221/455 (48%), Gaps = 55/455 (12%)

Query: 36  HLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPN 95
            ++ C+S ++  Q+ + ++ TG   D   A+ +++ S     F ++ Y+  +F  L   N
Sbjct: 21  QIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSA-TSDFRDIGYALSVFDQLPERN 79

Query: 96  GFIFNTMMRAYIQ-RNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALRLSVFEGKLI 153
            F +NT++RA  + ++    A+ ++  ML+   V  + +T+P + +A A+   + EGK +
Sbjct: 80  CFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  +LK G   D +V   L+ MY +CG +  A  LF                 Y N + V
Sbjct: 140 HGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF-----------------YRNVEGV 182

Query: 214 EEAKFIYN--KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
           ++ + +    +  E N++  N M+  + R GN+  A  LF  M ++ +VSW+ +IS Y Q
Sbjct: 183 DDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQ 242

Query: 272 NEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           N  Y+EA+ +F  M+    V+ + V +VSVL A + L V++ G  VH  A K  I     
Sbjct: 243 NGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDV 302

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L +AL+ MY+ CG I  A ++F+     ++I+WN+                         
Sbjct: 303 LGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNA------------------------- 337

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIH 449
                 +I G A H + ++  +    M+  GI P + T ++++SAC+H   +D+G+ + +
Sbjct: 338 ------VIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFN 391

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
             +   GLK        ++D+  + G ++ A E+ 
Sbjct: 392 DMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELI 426


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/561 (44%), Positives = 369/561 (65%), Gaps = 13/561 (2%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMY--EEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           A +LF  +P+ D   ++ +I  +  +++      L+L+ +M+ + V+ +     S+L AC
Sbjct: 76  ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC 135

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
                ++ G  +HA   K G   +    N+LIHMY +   +  A ++F    + D +SW 
Sbjct: 136 RK---IQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWT 192

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF--MEMQHHGI 422
           S+ISGY K G +++A  +F  M +K+  SW+ M++ Y Q ++F E  +LF  M+ +++ +
Sbjct: 193 SLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNV 252

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
             D+    +++SACT L ALDQGKWIH YI++NG++++S L T ++DMY K GC++ AL+
Sbjct: 253 L-DKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQ 311

Query: 483 VFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           VFH      + +SSWN +I G AM+G  + ++++F EM++  V P++ITF+ +L AC H 
Sbjct: 312 VFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHS 371

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG  +F+ MI+ + +EP  +H+GCMVDLLGRAGM+ EA +LI+ MP+SPDV   G 
Sbjct: 372 GLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGT 431

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LLGACKKH + E+GE +GR+++EL+P++ G +VLL+N++A+ G+W+D  +VR +M  RGV
Sbjct: 432 LLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGV 491

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV--AFDI 718
            K PG SMIE  G +HEF+AG+R HPQ  E+   + EM + LK  GY  DT  V    D 
Sbjct: 492 KKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDF 551

Query: 719 DQEEK-ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           D+EE  E  L+ HSEKLAIAFGL    P   +RI+KNLRIC DCH A K IS  FDREI+
Sbjct: 552 DEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREII 611

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRDR RFH FK G CSC D+W
Sbjct: 612 VRDRTRFHRFKMGQCSCQDYW 632


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/560 (44%), Positives = 355/560 (63%), Gaps = 3/560 (0%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A R+F  +   +   W+A+I  Y  ++  E A + +  M+   V  +      +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC NL  +     VH L +K+G    +   NAL+H+Y+ CGEI  A +LFD     D +
Sbjct: 96  RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           SWN MI GY+K G V+ A  +F  M  K+VVSW+++ISG  +  Q  E LSL  EMQ+ G
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG 215

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
              D   + S+++AC +L ALDQG+W+H Y+  NG+ ++ ++G  L++MY+K G ++ AL
Sbjct: 216 FELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEAL 275

Query: 482 EVFHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
            VF   +  +K V  W A+I GFA++G   ++LE F+ M++ G+ PN ITF  VL AC +
Sbjct: 276 SVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSY 335

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV+EG   F SM   + + P+ +HYGCMVDLLGR+G L EA+ELI+ MPM P    WG
Sbjct: 336 GGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWG 395

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC  H D  +G +VG  LVE+  DH G ++ L+ I A++G+W +  EVR  M   G
Sbjct: 396 ALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLG 455

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL-EGYAPDTLEVAFDI 718
           V   PG S +  NGI+HEFLAG + HPQ+ +I   L ++A++L+  EGY P T ++  D+
Sbjct: 456 VPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDL 515

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           + EEKET + +HSEKLAIAFGLI   P   IR++KNLRIC DCHT AK +S+ + REI++
Sbjct: 516 ENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIM 575

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RDR RFHHF+ GSCSC D+W
Sbjct: 576 RDRVRFHHFRDGSCSCKDYW 595



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 160/598 (26%), Positives = 271/598 (45%), Gaps = 122/598 (20%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMSYSFKIFAFLESPNGFIFNTM 102
           KQ  QI +QMI T +I +   A++ +   T   P + ++ Y+ ++F  + SPN F++N +
Sbjct: 2   KQLKQIQAQMIKTAIITEPKLATKFLTLCTS--PHVGDLLYAQRVFNGITSPNTFMWNAI 59

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +RAY   + P+ A   Y+ ML+++V  ++YT+P L +A    L++ E   +H  V+K GF
Sbjct: 60  IRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGF 119

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
            SDV+  N L+++YA+CG++  AR+LFD  P  D VSWN ++ GY+ + +V+ A  ++  
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLD 179

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE-QNEMYEEALVL 281
           MP +N+++  S+I      G   EA  L                 CYE QN  +E     
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSL-----------------CYEMQNAGFE----- 217

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
                     +D V + S+L+ACANL  +  G  +H   +  G++    +  AL++MY  
Sbjct: 218 ----------LDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVK 267

Query: 342 CGEITTAEKLFD--AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           CG++  A  +F    G+  D+  W +                               MI 
Sbjct: 268 CGDMEEALSVFGKLKGNQKDVYIWTA-------------------------------MID 296

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           G+A H +  E L  F  M+  GIRP+  T  +V+ AC++   +++GK             
Sbjct: 297 GFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGK------------- 343

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
                    +++  + C  N            +  +  ++     +G  D++ E+   +K
Sbjct: 344 ---------ELFKSMKCFYNV--------NPSIEHYGCMVDLLGRSGRLDEAKEL---IK 383

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHF--NSMIQEHRLEPNSKHYGCMVDL---LG 574
           K  + P+ + +  +L AC         HR F   S +  H +E +S H G  + L   L 
Sbjct: 384 KMPMKPSAVIWGALLKACWI-------HRDFLLGSQVGAHLVEVDSDHSGRYIQLATILA 436

Query: 575 RAGMLKEAEELIESM-----PMSP---DVATWGALLGACKKHGDHEMGERVGRKLVEL 624
             G  KEA E+   M     P+SP    V   G +      H DH   E++  KL ++
Sbjct: 437 AEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQI 494


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/743 (38%), Positives = 399/743 (53%), Gaps = 73/743 (9%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFEG-KLIH 154
           F +  M+    Q    Q+A  L+  M       +  TY  +  ASA+      E  K +H
Sbjct: 198 FSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVH 257

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            H  KAGF SD+ V N LI+MYA CG +  AR +FD     D++SWN+++ G        
Sbjct: 258 KHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGH 317

Query: 215 EAKFIYNKMPERNII---------------------------------------ASNSMI 235
           EA  I+ KM +   +                                         ++ +
Sbjct: 318 EAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFV 377

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ R G++ +A  +F ++  +++ +W+A+I    Q +   EAL LF+ M       D  
Sbjct: 378 HMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDAT 437

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             V++LSA      ++    VH+ A+  G+   + + NAL+HMY+               
Sbjct: 438 TFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYA--------------- 481

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                           KCG+   A+ +FD M+E++V +W+ MISG AQH    E  SLF+
Sbjct: 482 ----------------KCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFL 525

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M   GI PD  T VS++SAC    AL+  K +H++    GL  +  +G  L+ MY K G
Sbjct: 526 QMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCG 585

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            VD+A  VF    E+ V SW  +I G A +G    +L++F +MK  G  PN  +FV VL 
Sbjct: 586 SVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLS 645

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLVDEG R F S+ Q++ +EP  +HY CMVDLLGRAG L+EA+  I +MP+ P  
Sbjct: 646 ACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGD 705

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           A WGALLGAC  +G+ EM E   ++ ++L+P     +VLLSNI+A+ G W+  L VR MM
Sbjct: 706 APWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMM 765

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
            RRG+ K PG S IE +  IH F+ GD +HP+  EI   L ++ K+LK EGY PDT  V 
Sbjct: 766 QRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVL 825

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            + DQE KE  L  HSEKLAI +GL+     NPIR+ KNLR+C+DCHTA KFIS+   RE
Sbjct: 826 RNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGRE 885

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IV RD  RFHHFK G CSC D+W
Sbjct: 886 IVARDAKRFHHFKDGVCSCGDYW 908



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 164/679 (24%), Positives = 298/679 (43%), Gaps = 113/679 (16%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+  Y +    + A+ +Y  M       +  TY  + +A    +S+  GK IH H++++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F SDV V   L+NMY  CG +  A+ +FD+    +++SW  ++ G  +    +EA   + 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 222 KMPERNII---------------------------------------ASNSMIVLFGRKG 242
           +M     I                                         N+++ ++ + G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           ++ +A  +F  M ++D+ SW+ +I    Q+   +EA  LF+ M     + +    +S+L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 303 ACA--NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           A A  +   ++    VH  A K G    + + NALIHMY+                    
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYA-------------------- 280

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KCGS++ AR +FD M ++DV+SW+ MI G AQ+    E  ++F++MQ  
Sbjct: 281 -----------KCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G  PD  T +S+++      A +  K +H +  + GL  +  +G+  + MY++ G +D+A
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC--- 537
             +F     + V++WNA+I G A      ++L +F +M++ G  P+  TFV +L A    
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449

Query: 538 RHMGLVDEGHRH-FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
             +  V E H +  ++ + + R+         +V +  + G    A+++ + M +  +V 
Sbjct: 450 EALEWVKEVHSYAIDAGLVDLRVG------NALVHMYAKCGNTMYAKQVFDDM-VERNVT 502

Query: 597 TWGALLGACKKHG-DHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
           TW  ++    +HG  HE      + L E + PD   +  +LS   AS G  + V EV   
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSAC-ASTGALEWVKEVHSH 561

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD------------------ 696
            V  G+V      +   N ++H +             D+ML+                  
Sbjct: 562 AVNAGLVS----DLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGR 617

Query: 697 -----EMAKKLKLEGYAPD 710
                ++  K+KLEG+ P+
Sbjct: 618 GLDALDLFVKMKLEGFKPN 636



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+ ++F  +   N   +  M+    Q     +A  L+  ML   +  D  TY  +  A A
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++   K +H H + AG  SD+ V N L++MYA CG +  AR++FD+    D+ SW  
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTV 607

Query: 203 ILAGYVNADNVEEAKFIYNKM 223
           ++ G        +A  ++ KM
Sbjct: 608 MIGGLAQHGRGLDALDLFVKM 628


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/744 (35%), Positives = 417/744 (56%), Gaps = 47/744 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+ AY Q     +A+ LY  M    +G D+ T+  +  A +   S+ +G+ IH+ V 
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVF 134

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            +G DS   + N L+ MYA  G +  A+++F      D  SWN+++  +  + +   A  
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 219 IYNKM------------------------PE--------------RNIIASNSMIVLFGR 240
           I+ +M                        PE               +++ + ++I ++G+
Sbjct: 195 IFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGK 254

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G+  EA  +F +M K+D+VSW+ +I CY  N  + EAL L+  +        +   VS+
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC+++  +  G  VH+  ++ G++  + +  AL++MY+ CG +  A K+F+A  N D 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 361 ISWNSMISGYLKCG---SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           ++W+++I  Y   G      KAR +FD +  +D +SW+ MI+ Y Q+      + +F EM
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM 434

Query: 418 Q-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
               G++PD  T ++V+ AC  L  L + K +HA I ++ L+ N ++  TLI+MY + G 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A  +F   +EK V SW A++  F+  G   ++L++F EM   GV P+++T+  +L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H G +++G R+F  M + H L P + H+  MVDLLGR+G L +A+EL+ESMP  PD  
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W   L AC+ HG  E+GE    ++ EL P     ++ +SNI+A+ G W+ V  VR  M 
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKME 674

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            RG+ K+PG S IE +G +HEF +G + HP+ +EI   L  +   ++  GY PDT  V  
Sbjct: 675 ERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITI-SPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
           D+ + EKET L  HSEK+AIAFGL++      PIR++KNLR+C+DCHTA KFI+R   R+
Sbjct: 735 DVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRD 794

Query: 776 IVVRDRHRFHHFKH-GSCSCMDFW 798
           I+VRD +RFH F   G CSC D+W
Sbjct: 795 IIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/555 (25%), Positives = 249/555 (44%), Gaps = 107/555 (19%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           DN T+  +  + +    V EG+ +H+ +  + F+ D  V N LI+MY  C  L  AR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 190 D--ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA----------------- 230
           +  +    ++VSWN+++A Y    +  EA  +Y +M  + +                   
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 231 -------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                              +N+++ ++ R G+V +A R+F+ +  +D  SW+A+I  + Q
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           +  +  AL +F  M    V  +    ++V+S  +   V+  G  +HA  V  G +  + +
Sbjct: 186 SGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI+MY  CG    A ++FD     D++SWN MI  Y+  G                 
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNG----------------- 287

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                          F E L L+ ++   G +  +AT VS++ AC+ + AL QG+ +H++
Sbjct: 288 --------------DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSH 333

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS------------------ 493
           I + GL     + T L++MY K G ++ A +VF+  + +                     
Sbjct: 334 ILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA 393

Query: 494 ----------------SWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGA 536
                           SWNA+I  +  NG A  ++++F EM   +G+ P+ +TF+ VL A
Sbjct: 394 RKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEA 453

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +G + E  +  ++ I E  LE N      ++++  R G L+EAE L  +      V 
Sbjct: 454 CASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVV 511

Query: 597 TWGALLGACKKHGDH 611
           +W A++ A  ++G +
Sbjct: 512 SWTAMVAAFSQYGRY 526



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 222/446 (49%), Gaps = 46/446 (10%)

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVA 245
           D  P  D V++ ++L    +  +V E + ++ ++     ER+ +  N++I ++G+  ++ 
Sbjct: 2   DRQP--DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLV 59

Query: 246 EACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +A  +F+ M   ++++VSW+A+I+ Y QN    EALVL+  M    +  D V  VSVL A
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C++L     G  +H      G++ + +L NAL+ MY+  G +  A+++F +    D  SW
Sbjct: 120 CSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+                               +I  ++Q   +S  L +F EM+   ++
Sbjct: 177 NA-------------------------------VILAHSQSGDWSGALRIFKEMKCD-VK 204

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+  T ++VIS  +    L +G+ IHA I  NG   + ++ T LI+MY K G    A EV
Sbjct: 205 PNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREV 264

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F   +++ + SWN +I  + +NG   ++LE++ ++   G    + TFV +LGAC  +  +
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            +G R  +S I E  L+        +V++  + G L+EA ++  +M  + D   W  L+G
Sbjct: 325 AQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIG 382

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHD 629
           A   +G +    R  RK+ +     D
Sbjct: 383 AYASNG-YGKDARKARKVFDRLGSRD 407



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 216/486 (44%), Gaps = 72/486 (14%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I ++++  G   D   A+ LI          E   + ++F  ++  +   +N M+  Y+
Sbjct: 228 KIHAEIVANGFDTDLVVATALINMYGKCGSSHE---AREVFDKMKKRDMVSWNVMIGCYV 284

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
                 +A+ LY+ +          T+  +  A +   ++ +G+L+H H+L+ G DS+V 
Sbjct: 285 LNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA 344

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN---ADNVEEAKFIYNKMP 224
           V   L+NMYA CG L  ARK+F+     D V+W++++  Y +     +  +A+ +++++ 
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            R+ I+ N+MI  + + G    A ++F+EM                              
Sbjct: 405 SRDTISWNAMITTYVQNGCAVAAMKIFREMTGA--------------------------- 437

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
                +  D V  ++VL ACA+L  +    ++HA   +  +E  + + N LI+MY+ CG 
Sbjct: 438 ---AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +  AE+LF A     ++SW +M                               ++ ++Q+
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAM-------------------------------VAAFSQY 523

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSIL 463
            +++E L LF EM   G++PD+ T  S++  CTH  +L+QG ++       + L   +  
Sbjct: 524 GRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADH 583

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG---LADKSLEMFSEMK 519
              ++D+  + G + +A E+      E    +W   +    ++G   L + + E   E+ 
Sbjct: 584 FAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELD 643

Query: 520 KSGVTP 525
            S   P
Sbjct: 644 PSSTAP 649



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 153/298 (51%), Gaps = 17/298 (5%)

Query: 340 SSCGEITTAEKLFD----AGHNLDLISWNSMISGYLKCGSVEKARALFDAM--IEKDVVS 393
           SSCG++     L +    +    D +  N++IS Y KC S+  AR++F++M   +++VVS
Sbjct: 18  SSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVS 77

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI+ YAQ+   +E L L+  M   G+  D  T VSV+ AC+ L    QG+ IH  + 
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVF 134

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
            +GL     L   L+ MY + G V +A  +F   + +  +SWNA+I+  + +G    +L 
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F EM K  V PN  T++ V+       ++ EG R  ++ I  +  + +      ++++ 
Sbjct: 195 IFKEM-KCDVKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGFDTDLVVATALINMY 252

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           G+ G   EA E+ + M    D+ +W  ++G    +GD      + +KL     D +GF
Sbjct: 253 GKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDFHEALELYQKL-----DMEGF 304


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/744 (34%), Positives = 417/744 (56%), Gaps = 47/744 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+ AY Q     +A+ LY  M    +G D+ T+  +  A +   S+ +G+ IH+ V 
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVF 134

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            +G DS   + N L+ MYA  G +  A+++F      D  SWN+++  +  + +   A  
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 219 IYNKM------------------------PE--------------RNIIASNSMIVLFGR 240
           I+ +M                        PE               +++ + ++I ++G+
Sbjct: 195 IFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGK 254

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G+  EA  +F +M K+D+VSW+ +I CY QN  + EAL L+  +        +   VS+
Sbjct: 255 CGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSI 314

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC+++  +  G  VH+  ++ G++  + +  AL++MY+ CG +  A K+F+A  N D 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 361 ISWNSMISGYLKCG---SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           ++W+++I  Y   G      KAR +FD +  +D + W+ MI+ Y Q+      + +F EM
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM 434

Query: 418 Q-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
               G++PD  T ++V+ AC  L  L + K +HA I ++ L+ N ++  TLI+MY + G 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A  +F   +EK V SW A++  F+  G   ++L++F EM   GV P+++T+  +L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H G +++G R+F  M + H L P + H+  MVDLLGR+G L +A+EL+ESMP  PD  
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W   L AC+ HG  E+GE    ++ EL P     ++ +SNI+A+ G W+ V  VR  M 
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKME 674

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            RG+ K+PG S IE +G +HEF +G + HP+ +EI   L  +   ++  GY PDT  V  
Sbjct: 675 ERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITI-SPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
           D+ + EKET L  HSEK+AIAFGL++      PIR++KNLR+C+DCHTA KFI+R   R+
Sbjct: 735 DVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRD 794

Query: 776 IVVRDRHRFHHFKH-GSCSCMDFW 798
           I++RD +RFH F   G CSC D+W
Sbjct: 795 IILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/555 (24%), Positives = 250/555 (45%), Gaps = 107/555 (19%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           DN T+  +  + +    V EG+ +H+ +  + F+ D  V N LI+MY  C  L  AR +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 190 D--ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA----------------- 230
           +  +    ++VSWN+++A Y    +  EA  +Y +M  + +                   
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 231 -------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                              +N+++ ++ R G+V +A R+F+ +  +D  SW+A+I  + Q
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           +  +  AL +F  M    +  +    ++V+S  +   V+  G  +HA  V  G +  + +
Sbjct: 186 SGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI+MY  CG    A ++FD     D++SWN MI  Y+                    
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV-------------------- 284

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                      Q+  F E L L+ ++   G +  +AT VS++ AC+ + AL QG+ +H++
Sbjct: 285 -----------QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSH 333

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS----------------- 494
           I + GL     + T L++MY K G ++ A +VF+  + +   +                 
Sbjct: 334 ILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA 393

Query: 495 -----------------WNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGA 536
                            WNA+I  +  NG A  ++++F EM   +G+ P+ +TF+ VL A
Sbjct: 394 RKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEA 453

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +G + E  +  ++ I E  LE N      ++++  R G L+EAE L  +      V 
Sbjct: 454 CASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVV 511

Query: 597 TWGALLGACKKHGDH 611
           +W A++ A  ++G +
Sbjct: 512 SWTAMVAAFSQYGRY 526



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 221/446 (49%), Gaps = 46/446 (10%)

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVA 245
           D  P  D V++ ++L    +  +V E + ++ ++     ER+ +  N++I ++G+  ++ 
Sbjct: 2   DRQP--DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLV 59

Query: 246 EACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +A  +F+ M   ++++VSW+A+I+ Y QN    EALVL+  M    +  D V  VSVL A
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C++L     G  +H      G++ + +L NAL+ MY+  G +  A+++F +    D  SW
Sbjct: 120 CSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+                               +I  ++Q   +S  L +F EM+   ++
Sbjct: 177 NA-------------------------------VILAHSQSGDWSGALRIFKEMKCD-MK 204

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+  T ++VIS  +    L +G+ IHA I  NG   + ++ T LI+MY K G    A EV
Sbjct: 205 PNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREV 264

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F   +++ + SWN +I  +  NG   ++LE++ ++   G    + TFV +LGAC  +  +
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            +G R  +S I E  L+        +V++  + G L+EA ++  +M  + D   W  L+G
Sbjct: 325 AQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIG 382

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHD 629
           A   +G +    R  RK+ +     D
Sbjct: 383 AYASNG-YGKDARKARKVFDRLGSRD 407



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 218/486 (44%), Gaps = 72/486 (14%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I ++++  G  +D   A+ LI          E   + ++F  ++  +   +N M+  Y+
Sbjct: 228 KIHAEIVANGFDSDLVVATALINMYGKCGSSHE---AREVFDKMKKRDMVSWNVMIGCYV 284

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q     +A+ LY+ +          T+  +  A +   ++ +G+L+H H+L+ G DS+V 
Sbjct: 285 QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA 344

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN---ADNVEEAKFIYNKMP 224
           V   L+NMYA CG L  ARK+F+     D V+W++++  Y +     +  +A+ +++++ 
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            R+ I  N+MI  + + G    A ++F+EM                              
Sbjct: 405 SRDTICWNAMITTYVQNGCAVAAMKIFREMTGA--------------------------- 437

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
                +  D V  ++VL ACA+L  +    ++HA   +  +E  + + N LI+MY+ CG 
Sbjct: 438 ---AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +  AE+LF A     ++SW +M                               ++ ++Q+
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAM-------------------------------VAAFSQY 523

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSIL 463
            +++E L LF EM   G++PD+ T  S++  CTH  +L+QG ++       +GL   +  
Sbjct: 524 GRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADH 583

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG---LADKSLEMFSEMK 519
              ++D+  + G + +A E+      E    +W   +    ++G   L + + E   E+ 
Sbjct: 584 FAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELD 643

Query: 520 KSGVTP 525
            S   P
Sbjct: 644 PSSTAP 649



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 154/298 (51%), Gaps = 17/298 (5%)

Query: 340 SSCGEITTAEKLFD----AGHNLDLISWNSMISGYLKCGSVEKARALFDAM--IEKDVVS 393
           SSCG++     L +    +    D +  N++IS Y KC S+  AR++F++M   +++VVS
Sbjct: 18  SSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVS 77

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI+ YAQ+   +E L L+  M   G+  D  T VSV+ AC+ L    QG+ IH  + 
Sbjct: 78  WNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVF 134

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
            +GL     L   L+ MY + G V +A  +F   + +  +SWNA+I+  + +G    +L 
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F EM K  + PN  T++ V+       ++ EG R  ++ I  +  + +      ++++ 
Sbjct: 195 IFKEM-KCDMKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGFDSDLVVATALINMY 252

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           G+ G   EA E+ + M    D+ +W  ++G   ++GD      + +KL     D +GF
Sbjct: 253 GKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVQNGDFHEALELYQKL-----DMEGF 304


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/805 (35%), Positives = 439/805 (54%), Gaps = 76/805 (9%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           + T  + C + +    + ++++++  I +   +++L+     L       Y+F     + 
Sbjct: 57  VHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFD---HIH 113

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           + + + +N M+  Y +     + I C    ML++ +  D  T+P + +A     +V +G 
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACR---NVTDGN 170

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH   LK GF  DVYV  +LI++Y   G +  AR LFDE P  D+ SWN++++GY  + 
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230

Query: 212 NVEEAKFIYNKMP-----------------------------------ERNIIASNSMIV 236
           N +EA  + + +                                    E  +  SN +I 
Sbjct: 231 NAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           L+   G++ +  ++F  M  +DL+SW+++I  YE NE    A++LF  M   R+  D + 
Sbjct: 291 LYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLT 350

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECY-INLQNALIHMYSSCGEITTAEKLFDAG 355
           ++S+ S  + L  ++A  SV    ++ G     I + NA++ MY+               
Sbjct: 351 LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA--------------- 395

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                           K G V+ ARA+F+ +  KDV+SW+T+ISGYAQ+   SE + ++ 
Sbjct: 396 ----------------KLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 416 EMQHHG--IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
            M+  G  I  ++ T VSV+ AC+   AL QG  +H  + KNGL ++  +GT+L DMY K
Sbjct: 440 IMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGK 499

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +D+AL +F+         WN LI     +G  +K++ +F EM   GV P+ ITFV +
Sbjct: 500 CGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLVDEG   F  M  ++ + P+ KHYGCMVDL GRAG L+ A   I+SMP+ P
Sbjct: 560 LSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQP 619

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D + WGALL AC+ HG+ ++G+     L E++P+H G+HVLLSN++AS G+W+ V E+R 
Sbjct: 620 DASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRS 679

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +   +G+ K PG S +E +  +  F  G++THP   E+   L  + +KLK+ GY PD   
Sbjct: 680 ITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRF 739

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D++ +EKE  L  HSE+LA+AF LIT      IRI KNLR+C DCH+  KFIS+  +
Sbjct: 740 VLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITE 799

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI+VRD +RFHHFK+G CSC D+W
Sbjct: 800 REIIVRDSNRFHHFKNGVCSCGDYW 824



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 11/204 (5%)

Query: 406 QFSETLSLFMEMQHHGIRPDEATLV-SVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           +FS + +   +   +G    E   V ++   CT+L      K +HA +  +    N  + 
Sbjct: 33  EFSASANALQDCWKNGNESKEIDDVHTLFRYCTNL---QSAKCLHARLVVSNAIQNVCIS 89

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE-MKKSGV 523
             L+++Y  LG V  A   F     + V +WN +I G+   G + + +  FS  M  SG+
Sbjct: 90  AKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGL 149

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+  TF  VL ACR+   V +G++  + +  +     +      ++ L  R G +  A 
Sbjct: 150 QPDYRTFPSVLKACRN---VTDGNK-IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNAR 205

Query: 584 ELIESMPMSPDVATWGALL-GACK 606
            L + MP + D+ +W A++ G C+
Sbjct: 206 ILFDEMP-TRDMGSWNAMISGYCQ 228


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/516 (47%), Positives = 340/516 (65%), Gaps = 2/516 (0%)

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           M + D  V+ D      VL AC  L+ V  G ++H L  K+G    + LQN ++++Y  C
Sbjct: 1   MRLFD--VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC 58

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           GE+  A  LF+     D ++WN +I+   K G ++ A   F  M  K+V SW++MISG+ 
Sbjct: 59  GEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFV 118

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q  + +E + LFM+++   +RP+E T+VSV++AC  L  LD G+ +H Y  K+G K N  
Sbjct: 119 QCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVH 178

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           +  TLIDMY+K GC++NA  VF+  EE+ V SW+A+I G AM+G A+++L +FSEM K G
Sbjct: 179 VCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG 238

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V PN +TF+G+L AC HMGL+DEG R F SM  ++ + P  +HYGC+VDL  RAG+L+EA
Sbjct: 239 VKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEA 298

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            E I SMP+ P+   WGALLG CK H + ++ E   + L EL P +DG++V++SNI+A  
Sbjct: 299 HEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEA 358

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            RW+D   VR +M  RGV K  G S I  NG++HEF+AGD+THPQ  +I  + D++  K+
Sbjct: 359 ERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKM 418

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GYAP T  V  D++++EKE  L+RHSEKLA+ FGL+T     PIRIMKNLR+C DCH
Sbjct: 419 KRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCH 478

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            A K IS    REI+VRDR+RFH F+ G CSC DFW
Sbjct: 479 AALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 188/396 (47%), Gaps = 71/396 (17%)

Query: 130 DNYTYPLLAQASALRLS-VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           D +T   + +A  L+LS V  GK IH    K GF S++++ N ++N+Y +CG++  A  L
Sbjct: 9   DTFTCSFVLKA-CLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEAC 248
           F+                               KMP+R+ +  N +I    ++G++  A 
Sbjct: 68  FE-------------------------------KMPQRDAVTWNIVIAQLAKRGDIDGAY 96

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
             F  MP K++ SW+++IS + Q     EA+ LFM + D  V  +EV VVSVL+ACA+L 
Sbjct: 97  GFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLG 156

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G  VH  + K G +  +++ N LI MY  CG +  A ++F       ++SW++MI+
Sbjct: 157 DLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIA 216

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           G    G  E                               E L LF EM   G++P+  T
Sbjct: 217 GLAMHGQAE-------------------------------EALCLFSEMIKLGVKPNGVT 245

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHGT 487
            + ++ AC+H+  +D+G+   A +  +   I  I     ++D++ + G ++ A E     
Sbjct: 246 FIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM 305

Query: 488 EEK--GVSSWNALIIGFAMN---GLADKSLEMFSEM 518
             K  GV  W AL+ G  ++    LA+++++  SE+
Sbjct: 306 PIKPNGV-VWGALLGGCKVHKNIDLAEEAIKHLSEL 340



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 79  IEMSYSFKIFAFLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
           I+ +Y F    FL  PN  +  + +M+  ++Q   P +AI L+  + +  V  +  T   
Sbjct: 92  IDGAYGF----FLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVS 147

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           +  A A    +  G+++H++  K+GF  +V+V NTLI+MY  CG L  AR++F E     
Sbjct: 148 VLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERT 207

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKM 223
           +VSW++++AG       EEA  ++++M
Sbjct: 208 VVSWSAMIAGLAMHGQAEEALCLFSEM 234


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/667 (37%), Positives = 393/667 (58%), Gaps = 39/667 (5%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           + D+   N +I  Y    +L  AR+LF+  P  D+ SWN+IL+GY     V++A+ ++++
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDR 177

Query: 223 MPERNIIASNSMI-------------VLFG------------------RKGNVAEACRLF 251
           MPE+N ++ N+++             VLFG                  +K  + EA + F
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFF 237

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             M  +D+VSW+ +I+ Y QN   +EA  LF     H V     +V   +    N  V +
Sbjct: 238 DSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQ---NRMVEE 294

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
           A      +  +  +       NA++  Y     +  A++LFD     ++ +WN+MI+GY 
Sbjct: 295 ARELFDRMPERNEVSW-----NAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYA 349

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           +CG + +A+ LFD M ++D VSW+ MI+GY+Q     E L LF+ M+  G R + ++  S
Sbjct: 350 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSS 409

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            +S C  +VAL+ GK +H  + K G +    +G  L+ MY K G ++ A ++F     K 
Sbjct: 410 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 469

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + SWN +I G++ +G  +++L  F  MK+ G+ P++ T V VL AC H GLVD+G ++F+
Sbjct: 470 IVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFH 529

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           +M Q++ + PNS+HY CMVDLLGRAG+L+EA  L+++MP  PD A WG LLGA + HG+ 
Sbjct: 530 TMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 589

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           E+ E    K+  ++P++ G +VLLSN++AS GRW DV ++R  M  +GV K+PG S IE 
Sbjct: 590 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 649

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
               H F  GD  HP+ +EI   L+++  ++K  GY   T  V  D+++EEKE  +  HS
Sbjct: 650 QNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHS 709

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           E+LA+A+G++ +S   PIR++KNLR+C DCH A K++++   R I++RD +RFHHFK GS
Sbjct: 710 ERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGS 769

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 770 CSCGDYW 776



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 208/431 (48%), Gaps = 79/431 (18%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   +N ++ AY+Q +  ++A  L+    N         + L++    L  
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSREN---------WALVSWNCLLGG 223

Query: 146 SVFEGKLIHDHVLKAGFDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDL---- 197
            V + K++        FDS    DV   NT+I  YA  G++  AR+LFDESPV D+    
Sbjct: 224 FVKKKKIVEARQF---FDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWT 280

Query: 198 ---------------------------VSWNSILAGYVNADNVEEAKFIYNKMPERNIIA 230
                                      VSWN++LAGYV  + VE AK +++ MP RN+  
Sbjct: 281 AMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVST 340

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+MI  + + G ++EA  LF +MPK+D VSW+A+I+ Y Q+    EAL LF+ M     
Sbjct: 341 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGG 400

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            ++     S LS CA++  ++ G  +H   VK G E    + NAL+ MY  CG I  A  
Sbjct: 401 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 460

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LF      D++SWN+MI+GY + G  E                               E 
Sbjct: 461 LFKEMAGKDIVSWNTMIAGYSRHGFGE-------------------------------EA 489

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLID 469
           L  F  M+  G++PD+AT+V+V+SAC+H   +D+G+ + H   +  G++ NS     ++D
Sbjct: 490 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVD 549

Query: 470 MYMKLGCVDNA 480
           +  + G ++ A
Sbjct: 550 LLGRAGLLEEA 560



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 202/473 (42%), Gaps = 70/473 (14%)

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           K  + +I   N  I  + R G  +EA R+FK MP+   VS++A+IS Y +N  +E A +L
Sbjct: 53  KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARML 112

Query: 282 F-----MNMIDHRVMVDEVVVVSVLSACANL-------TVVKAGTSVHALAVKIGIECYI 329
           F      +++   VM+   V    L     L        V    T +   A    ++   
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDAR 172

Query: 330 NL-----------QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            +            NAL+  Y    ++  A  LF +  N  L+SWN ++ G++K   + +
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVE 232

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           AR  FD+M  +DVVSW+T+I+GYAQ+ +  E   LF E   H    D  T  +++S    
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH----DVFTWTAMVSGYIQ 288

Query: 439 LVALDQGKWIHAYI-RKNGLKINSILG--------------------------TTLIDMY 471
              +++ + +   +  +N +  N++L                            T+I  Y
Sbjct: 289 NRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGY 348

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            + G +  A  +F    ++   SW A+I G++ +G + ++L +F  M++ G   N  +F 
Sbjct: 349 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVD-----LLGRAGMLKEAEEL 585
             L  C  +  ++ G        Q H RL       GC V      +  + G ++EA +L
Sbjct: 409 SALSTCADVVALELGK-------QLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 461

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKLVELQPDHDGFHVLLS 636
            + M    D+ +W  ++    +HG  E   R     K   L+PD      +LS
Sbjct: 462 FKEMA-GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/539 (44%), Positives = 350/539 (64%)

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V W+ALIS + ++  +E +   F++M+    M   V  VSVLSAC     +  G  VH  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            ++ G+     ++NAL+ MY+ CG++  A  LF+      + SW S+ISG ++ G V++A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R LFD M E+D ++W+ MI GY Q  +F + L  F  MQ   +R DE T+VSV++AC  L
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            AL+ G+W   Y+ + G+K++  +G  LIDMY K G ++ AL+VF     +   +W A+I
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
           +G A+NG  +++++MF  M ++  TP+E+TFVGVL AC H GLVD+G   F SM + + +
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNI 426

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
            P   HYGC++D+LGRAG LKEA + I+ MPM P+   WG LL +C+ +G+ E+GE    
Sbjct: 427 SPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
           +L+EL PD+   ++LLSN++A   RW DV  +R +++ +G+ K PGCSMIE NGIIHEF+
Sbjct: 487 RLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFV 546

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
           A DR+HP   EI + L+ +   L+  GY PD  EV  ++ +EEK+  L+ HSEKLA+ F 
Sbjct: 547 AADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFA 606

Query: 740 LITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           L+T      IRI+KNLR+C DCH A K IS+ + RE++VRDR RFHHF+HGSCSC D+W
Sbjct: 607 LLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 151/349 (43%), Gaps = 62/349 (17%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++N ++  + +    + + C +  M+  +      TY  +  A      +  G  +H  V
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           L++G   D  V N L++MYA CGD+ AA  LF+   +  + SW S+++G V         
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLV--------- 238

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                                 R G V  A  LF  MP++D ++W+A+I  Y Q   + +
Sbjct: 239 ----------------------RSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRD 276

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL  F  M   +V  DE  +VSV++ACA L  ++ G        ++GI+  + + NALI 
Sbjct: 277 ALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALID 336

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS CG I  A  +F   HN D  +W ++I G    G  E                    
Sbjct: 337 MYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGE-------------------- 376

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                      E + +F  M      PDE T V V++ACTH   +D+G+
Sbjct: 377 -----------EAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR 414



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 32/349 (9%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD----AGHNLDLISWNSMISGYL 371
           +HA  VK G+E   +  ++LI MY++ G+   A  + +    A      + WN++ISG+ 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 372 KCGSVEKARALFDAMIEKD----VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-- 425
           + G  E +   F  M+        V++ +++S   +       + +   +   G+ PD  
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 426 -EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEV 483
            E  LV + + C  + A        A++   G+++ S+   T++I   ++ G VD A ++
Sbjct: 198 VENALVDMYAECGDMDA--------AWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDL 249

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F    E+   +W A+I G+   G    +LE F  M+   V  +E T V V+ AC  +G +
Sbjct: 250 FDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGAL 309

Query: 544 DEGHRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA- 600
           + G     + I   RL      +    ++D+  + G ++ A ++ + M  + D  TW A 
Sbjct: 310 ETGEW---ARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTAI 365

Query: 601 LLGACKKHGDHEMGERVGRKLVELQ-PDHDGF-HVLLSNIHAS---KGR 644
           +LG        E  +   R L  LQ PD   F  VL +  HA    KGR
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR 414



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 63/137 (45%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   +  M+  Y+Q    + A+  ++ M    V  D +T   +  A A   +
Sbjct: 249 LFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGA 308

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+    ++ + G   DV+V N LI+MY+ CG +  A  +F +    D  +W +I+ G
Sbjct: 309 LETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILG 368

Query: 207 YVNADNVEEAKFIYNKM 223
                  EEA  ++ +M
Sbjct: 369 LAVNGRGEEAIDMFYRM 385


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/753 (37%), Positives = 408/753 (54%), Gaps = 73/753 (9%)

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-RL 145
            +F  +   + F +  M+    Q    Q+A  L+  M  N    +  TY  +  ASA+   
Sbjct: 377  VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 146  SVFEG-KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S  E  K++H H  +AGF SD+ + N LI+MYA CG +  AR +FD     D++SWN+++
Sbjct: 437  SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMM 496

Query: 205  AGYVNADNVEEAKFIYNKMPERNII----------------------------------- 229
             G        EA  ++ +M +  ++                                   
Sbjct: 497  GGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLI 556

Query: 230  ----ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                  ++ I ++ R G++ +A  LF ++  + + +W+A+I    Q     EAL LF+ M
Sbjct: 557  SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 286  IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                 + D    +++LSA  +   ++    VH+ A   G+   + + NAL+H YS     
Sbjct: 617  QREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYS----- 670

Query: 346  TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                      KCG+V+ A+ +FD M+E++V +W+ MI G AQH 
Sbjct: 671  --------------------------KCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHG 704

Query: 406  QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
               +  S F++M   GI PD  T VS++SAC    AL+  K +H +    GL  +  +G 
Sbjct: 705  CGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGN 764

Query: 466  TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
             L+ MY K G +D+A  VF    E+ V SW  +I G A +G   ++L+ F +MK  G  P
Sbjct: 765  ALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKP 824

Query: 526  NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
            N  ++V VL AC H GLVDEG R F SM Q++ +EP  +HY CMVDLLGRAG+L+EAE  
Sbjct: 825  NGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELF 884

Query: 586  IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
            I +MP+ PD A WGALLGAC  +G+ EM E   ++ ++L+P     +VLLSNI+A+ G+W
Sbjct: 885  ILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKW 944

Query: 646  DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            +  L VR MM R+G+ K PG S IE +  IH F+ GD +HP+  EI   L+++ ++LK +
Sbjct: 945  EQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAK 1004

Query: 706  GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            GY PDT  V  + DQE KE  L  HSEKLAI +GL+     +PIR+ KNLR+C+DCHTA 
Sbjct: 1005 GYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTAT 1064

Query: 766  KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KFIS+   REIV RD  RFHHFK G CSC D+W
Sbjct: 1065 KFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 170/716 (23%), Positives = 326/716 (45%), Gaps = 102/716 (14%)

Query: 37  LQKCQSFKQFTQILSQ-----MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           LQ+C   KQ   +L++     +I +G+  + + A++L++     +    +  + ++F  L
Sbjct: 125 LQRC--LKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRV---YIRCGRLQCARQVFDKL 179

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              N +I+ TM+  Y +    + A+ +Y  M       +  TY  + +A    +++  GK
Sbjct: 180 LKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGK 239

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH H++++GF SDV V   L+NMY  CG +  A+ +FD+    +++SW  ++ G  +  
Sbjct: 240 KIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG 299

Query: 212 NVEEAKFIYNKMPERNII---------------------------------------ASN 232
             +EA  ++ +M     I                                         N
Sbjct: 300 RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ ++ + G++ +A  +F  M ++D+ SW+ +I    Q+   +EA  LF+ M  +  + 
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 293 DEVVVVSVL--SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           +    +S+L  SA A+ + ++    VH  A + G    + + NALIHMY+ CG I  A  
Sbjct: 420 NLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARL 479

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD   + D+ISWN+M                               + G AQ+    E 
Sbjct: 480 VFDGMCDRDVISWNAM-------------------------------MGGLAQNGCGHEA 508

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
            ++F++MQ  G+ PD  T +S+++      AL+    +H +  + GL  +  +G+  I M
Sbjct: 509 FTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHM 568

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y++ G +D+A  +F     + V++WNA+I G A      ++L +F +M++ G  P+  TF
Sbjct: 569 YIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTF 628

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEP---NSKHYGCMVDLLGRAGMLKEAEELIE 587
           + +L A      VDE    +   +  H  +    + +    +V    + G +K A+++ +
Sbjct: 629 INILSAN-----VDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFD 683

Query: 588 SMPMSPDVATWGALLGACKKHG-DHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKGRW 645
            M +  +V TW  ++G   +HG  H+      + L E + PD   +  +LS   AS G  
Sbjct: 684 DM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSAC-ASTGAL 741

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
           + V EV    V  G+V      +   N ++H +         I++  ++ D+M ++
Sbjct: 742 EWVKEVHNHAVSAGLVS----DLRVGNALVHMYAKCG----SIDDARSVFDDMVER 789



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/624 (24%), Positives = 283/624 (45%), Gaps = 108/624 (17%)

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
             + A+ + K+ +   + +D+++Y  + Q    +  +   K +H  ++K+G + ++YV N
Sbjct: 98  TAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVAN 157

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---- 226
            L+ +Y  CG L  AR++FD+    ++  W +++ GY    + E+A  +Y+KM +     
Sbjct: 158 KLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQP 217

Query: 227 --------------------------NIIAS---------NSMIVLFGRKGNVAEACRLF 251
                                     +II S          +++ ++ + G++ +A  +F
Sbjct: 218 NEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            +M +++++SW+ +I         +EA  LF+ M     + +    VS+L+A A+   ++
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
               VH+ AV  G+   + + NAL+HMY+  G I  A  +FD     D+ SW  MI    
Sbjct: 338 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI---- 393

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                       G AQH +  E  SLF++MQ +G  P+  T +S
Sbjct: 394 ---------------------------GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLS 426

Query: 432 VI--SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           ++  SA     AL+  K +H +  + G   +  +G  LI MY K G +D+A  VF G  +
Sbjct: 427 ILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCD 486

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACRHMGLVDEG 546
           + V SWNA++ G A NG   ++  +F +M++ G+ P+  T++ +L   G+   +  V+E 
Sbjct: 487 RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEV 546

Query: 547 HRHF--NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           H+H     +I + R+          + +  R G + +A  L + + +   V TW A++G 
Sbjct: 547 HKHAVETGLISDFRVGS------AFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599

Query: 605 CKKHGDHEMGERVGRKLVE--LQPDHDGF--------HVLLSNIHASKGRWDDVLEVRGM 654
             +       +R GR+ +   LQ   +GF        ++L +N+      W  V EV   
Sbjct: 600 AAQ-------QRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEW--VKEVHSH 650

Query: 655 MVRRGVVKIPGCSMIEANGIIHEF 678
               G+V +        N ++H +
Sbjct: 651 ATDAGLVDLR-----VGNALVHTY 669



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 12/233 (5%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           + Y+ ++F  +   N   +  M+    Q      A   +  ML   +  D  TY  +  A
Sbjct: 675 VKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSA 734

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   ++   K +H+H + AG  SD+ V N L++MYA CG +  AR +FD+    D+ SW
Sbjct: 735 CASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSW 794

Query: 201 NSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
             ++ G        EA   + KM       N  +  +++      G V E  R F  M +
Sbjct: 795 TVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQ 854

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
                  +  ++ ++    +  + EEA +  +NM    +  D+    ++L AC
Sbjct: 855 DYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNM---PIEPDDAPWGALLGAC 904


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 411/740 (55%), Gaps = 72/740 (9%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            +N ++  Y +R    +A+ LYK M +  V     T+  L  A A   +  +GK+IH+ +L
Sbjct: 399  WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            ++G  S+ ++ N L+NMY  CG L  A+ +F+ +   D++SWNS++AG+    + E A  
Sbjct: 459  RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518

Query: 219  IYNKM------PERNIIAS---------------------------------NSMIVLFG 239
            ++ +M      P+    AS                                 N++I ++ 
Sbjct: 519  LFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYI 578

Query: 240  RKGNVAEACRLFKEMPKKDLVSWSALIS-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R G++ +A  +F  +  +D++SW+A+I  C +Q E  + A+ LF  M +      +    
Sbjct: 579  RCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK-AIELFWQMQNEGFRPVKSTFS 637

Query: 299  SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
            S+L  C +   +  G  V A                                + ++G+ L
Sbjct: 638  SILKVCTSSACLDEGKKVIAY-------------------------------ILNSGYEL 666

Query: 359  DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            D    N++IS Y K GS+  AR +FD M  +D+VSW+ +I+GYAQ+      +    +MQ
Sbjct: 667  DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQ 726

Query: 419  HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
               + P++ + VS+++AC+   AL++GK +HA I K  L+ +  +G  LI MY K G   
Sbjct: 727  EQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQG 786

Query: 479  NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
             A EVF    EK V +WNA+I  +A +GLA K+L  F+ M+K G+ P+  TF  +L AC 
Sbjct: 787  EAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACN 846

Query: 539  HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            H GLV EG++ F+SM  E+ + P  +HYGC+V LLGRA   +EAE LI  MP  PD A W
Sbjct: 847  HAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVW 906

Query: 599  GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
              LLGAC+ HG+  + E      ++L   +   ++LLSN++A+ GRWDDV ++R +M  R
Sbjct: 907  ETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGR 966

Query: 659  GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            G+ K PG S IE + IIHEF+A DR+HP+  EI   L  ++ +++  GY PDT  V  D+
Sbjct: 967  GIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDL 1026

Query: 719  DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
             +  +ET+L  HSE+LAIA+GLI   P  PIRI KNLRIC DCHTA+KFIS+   REI+ 
Sbjct: 1027 GKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIA 1086

Query: 779  RDRHRFHHFKHGSCSCMDFW 798
            RD +RFH FK+G CSC D+W
Sbjct: 1087 RDSNRFHSFKNGKCSCEDYW 1106



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/616 (25%), Positives = 293/616 (47%), Gaps = 78/616 (12%)

Query: 37  LQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C       +  +I +QM+   +  D F ++ LI         ++   + ++F  +  
Sbjct: 34  LQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD---AHQVFKEMPR 90

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N+++  Y Q+   ++A  L++ M N     +  TY  +  A      +  GK I
Sbjct: 91  RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKI 150

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++KAG+  D  V N+L++MY  CGDL  AR++F      D+VS+N++L  Y     V
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYV 210

Query: 214 EEAKFIYNKM------PER---------------------------------NIIASNSM 234
           +E   ++ +M      P++                                 +I    ++
Sbjct: 211 KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL 270

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + +  R G+V  A + FK    +D+V ++ALI+   Q+    EA   +  M    V ++ 
Sbjct: 271 VTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNR 330

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
              +S+L+AC+    ++AG  +H+                                + + 
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHS-------------------------------HISED 359

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           GH+ D+   N++IS Y +CG + KAR LF  M ++D++SW+ +I+GYA+ +   E + L+
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +MQ  G++P   T + ++SAC +  A   GK IH  I ++G+K N  L   L++MY + 
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A  VF GT+ + V SWN++I G A +G  + + ++F EM+   + P+ ITF  VL
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVL 539

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
             C++   ++ G +  +  I E  L+ +      ++++  R G L++A  +  S+    D
Sbjct: 540 SGCKNPEALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRD 597

Query: 595 VATWGALLGACKKHGD 610
           V +W A++G C   G+
Sbjct: 598 VMSWTAMIGGCADQGE 613



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/549 (25%), Positives = 263/549 (47%), Gaps = 82/549 (14%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TY  L Q    +  + E K IH  +++A    D++++N LINMY  C  +  A ++F E 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 193 PVLDLVSWNSILAGYVNA----------DNVEEAKFIYNKMP------------------ 224
           P  D++SWNS+++ Y             + ++ A FI NK+                   
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 225 -----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                      +R+    NS++ ++G+ G++  A ++F  +  +D+VS++ ++  Y Q  
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             +E L LF  M    +  D+V  +++L A    +++  G  +H L V+ G+   I +  
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ M   CG++ +A++ F                     G+ ++           DVV 
Sbjct: 269 ALVTMCVRCGDVDSAKQAFK--------------------GTADR-----------DVVV 297

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           ++ +I+  AQH    E    +  M+  G+  +  T +S+++AC+   AL+ GK IH++I 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           ++G   +  +G  LI MY + G +  A E+F+   ++ + SWNA+I G+A      +++ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG----CM 569
           ++ +M+  GV P  +TF+ +L AC +     +G      MI E  L    K  G     +
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-----KMIHEDILRSGIKSNGHLANAL 472

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPD 627
           +++  R G L EA+ + E    + DV +W +++    +HG +E   ++ +++   EL+PD
Sbjct: 473 MNMYRRCGSLMEAQNVFEGT-QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 628 HDGFHVLLS 636
           +  F  +LS
Sbjct: 532 NITFASVLS 540



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 234/465 (50%), Gaps = 49/465 (10%)

Query: 215 EAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
           EAK I+ +M E     +I  SN +I ++ +  +V +A ++FKEMP++D++SW++LISCY 
Sbjct: 45  EAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYA 104

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           Q    ++A  LF  M +   + +++  +S+L+AC +   ++ G  +H+  +K        
Sbjct: 105 QQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK-------- 156

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
                                  AG+  D    NS++S Y KCG + +AR +F  +  +D
Sbjct: 157 -----------------------AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRD 193

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           VVS++TM+  YAQ     E L LF +M   GI PD+ T ++++ A T    LD+GK IH 
Sbjct: 194 VVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
              + GL  +  +GT L+ M ++ G VD+A + F GT ++ V  +NALI   A +G   +
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVE 313

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           + E +  M+  GV  N  T++ +L AC     ++ G +  +S I E     + +    ++
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALI 372

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
            +  R G L +A EL  +MP   D+ +W A++    +  D     R+ +++    ++P  
Sbjct: 373 SMYARCGDLPKARELFYTMPKR-DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGR 431

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
             F  LLS    S    D      G M+   +++    S I++NG
Sbjct: 432 VTFLHLLSACANSSAYAD------GKMIHEDILR----SGIKSNG 466



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 33/318 (10%)

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +    V++L  C    ++     +HA  V+  +   I L N LI+MY  C  +  A ++
Sbjct: 25  TERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F      D+ISWNS+IS Y + G  +KA                                
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKA-------------------------------F 113

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF EMQ+ G  P++ T +S+++AC     L+ GK IH+ I K G + +  +  +L+ MY
Sbjct: 114 QLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMY 173

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A +VF G   + V S+N ++  +A      + L +F +M   G++P+++T++
Sbjct: 174 GKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYI 233

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L A     ++DEG R  + +  E  L  + +    +V +  R G +  A++  +    
Sbjct: 234 NLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA- 291

Query: 592 SPDVATWGALLGACKKHG 609
             DV  + AL+ A  +HG
Sbjct: 292 DRDVVVYNALIAALAQHG 309



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 420 HGIRPDE---ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           H  RP E   AT V+++  CT    L + K IHA + +  +  +  L   LI+MY+K   
Sbjct: 18  HQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRS 77

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           V +A +VF     + V SWN+LI  +A  G   K+ ++F EM+ +G  PN+IT++ +L A
Sbjct: 78  VLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137

Query: 537 CRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-D 594
           C     ++ G +  + +I+  ++ +P  ++   ++ + G+ G L  A ++     +SP D
Sbjct: 138 CYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAG--ISPRD 193

Query: 595 VATWGALLG 603
           V ++  +LG
Sbjct: 194 VVSYNTMLG 202



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 137/307 (44%), Gaps = 40/307 (13%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  L+  +   +  M+     +    +AI L+  M N        T+  + +       
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC 648

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + EGK +  ++L +G++ D  V N LI+ Y+  G ++ AR++FD+ P  D+VSWN I+AG
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAG 708

Query: 207 Y-------------------------------VNA----DNVEEAKFIYNKMPER----N 227
           Y                               +NA      +EE K ++ ++ +R    +
Sbjct: 709 YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +    ++I ++ + G+  EA  +F  + +K++V+W+A+I+ Y Q+ +  +AL  F  M  
Sbjct: 769 VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEK 828

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEIT 346
             +  D     S+LSAC +  +V  G  +  ++  + G+   I     L+ +        
Sbjct: 829 EGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQ 888

Query: 347 TAEKLFD 353
            AE L +
Sbjct: 889 EAETLIN 895



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 20/293 (6%)

Query: 24  FKPTINLSILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           F+P    S   + L+ C S     +  ++++ ++ +G   DT   + LI   +       
Sbjct: 629 FRPV--KSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSK---SGS 683

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M+ + ++F  + S +   +N ++  Y Q  + Q A+     M   +V  + +++  L  A
Sbjct: 684 MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNA 743

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            +   ++ EGK +H  ++K     DV V   LI+MYA CG    A+++FD     ++V+W
Sbjct: 744 CSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTW 803

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPK 256
           N+++  Y       +A   +N M +  I        S++      G V E  ++F  M  
Sbjct: 804 NAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMES 863

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +      +  +  L+    +   ++EA  L   M       D  V  ++L AC
Sbjct: 864 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM---PFPPDAAVWETLLGAC 913


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/550 (44%), Positives = 345/550 (62%), Gaps = 1/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F    + D   W+ +I  +  ++  E +L+L+  M+      +     S+L AC+NL+ 
Sbjct: 100 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA 159

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++  T +HA   K+G E  +   N+LI+ Y++ G    A  LFD     D +SWNS+I G
Sbjct: 160 LEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKG 219

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G ++ A  LF  M+EK+ +SW+TMISGY Q     E L LF EMQ+  + PD  +L
Sbjct: 220 YAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSL 279

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            + +SAC  L AL+QGKWIH+Y+ K  ++++S+LG  LIDMY K G +  ALEVF   + 
Sbjct: 280 ANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQR 339

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K V +W ALI G+A +G   +++  F EM+K G+ PN ITF  VL AC + GLV+EG   
Sbjct: 340 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLI 399

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F +M +++ L+P  +HYGC+VDLL RAG+L EA+  I+ MP+ P+   WGALL AC+ H 
Sbjct: 400 FYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 459

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+GE +G  L+ + P H G +V  +NIHA   +WD   E R +M  +GV K+PGCS I
Sbjct: 460 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTI 519

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD-TLEVAFDIDQEEKETTLF 728
              G  HEFLAGDR+HP+I +I +    M +KL+  GY P+    +   +D +E+ET + 
Sbjct: 520 SLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVH 579

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
           +HSEKLAI +GLI   P   IRIMKNLR+C DCH   K IS+ + R+IV+RDR RFHHF+
Sbjct: 580 QHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFR 639

Query: 789 HGSCSCMDFW 798
            G CSC D+W
Sbjct: 640 DGKCSCGDYW 649



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 231/506 (45%), Gaps = 107/506 (21%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIK-----FSTDLLPFIEMSYSFKIFAFLES 93
           +C   ++  QI ++M+ TGLI D++A ++ +       S+D LP+ ++     +F   + 
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQI-----VFDGFDR 106

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+ F++N M+R +   + P++++ LY+ ML  +   + YT+P L +A +   ++ E   I
Sbjct: 107 PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQI 166

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  + K G+++DVY  N+LIN YA  G+   A  LFD  P  D VSWNS++ GY  A  +
Sbjct: 167 HAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKM 226

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
           + A  ++ KM E+N I+  +MI  + + G   EA +LF EM   D               
Sbjct: 227 DIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSD--------------- 271

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
                           V  D V + + LSACA L  ++ G  +H+   K  I     L  
Sbjct: 272 ----------------VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGC 315

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
            LI MY+ CG++  A ++F       + +W ++ISG                        
Sbjct: 316 VLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISG------------------------ 351

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                  YA H    E +S FMEMQ  GI+P+  T  +V++AC++   +++GK I   + 
Sbjct: 352 -------YAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNME 404

Query: 454 KN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
           ++  LK         I+ Y   GCV + L                     +  GL D++ 
Sbjct: 405 RDYNLK-------PTIEHY---GCVVDLL---------------------SRAGLLDEAK 433

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACR 538
               EM    + PN + +  +L ACR
Sbjct: 434 RFIQEMP---LKPNAVIWGALLKACR 456


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/564 (44%), Positives = 353/564 (62%), Gaps = 7/564 (1%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           GN   + R+F +  + ++  ++ +I     N+ ++E++ ++ +M    +  D      +L
Sbjct: 56  GNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLL 115

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA L   K G  +H L VK G E    +  +L+ +Y  CG I  A K+FD     ++ 
Sbjct: 116 KACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVA 175

Query: 362 SWNSMISGYLKCGSVE-------KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           +W ++ISGY+  G          +A ++FD M+EKD+VSWS+MI GYA +    E L LF
Sbjct: 176 AWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLF 235

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M + G RPD   +V V+ AC  L AL+ G W    + +N    N +LGT LIDMY K 
Sbjct: 236 FKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKC 295

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +D+A EVF G  +K +  WNA I G AM+G    +  +F +M+KSG+ P+  TFVG+L
Sbjct: 296 GRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLL 355

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLVDEG ++FNSM +   L P  +HYGCMVDLLGRAG L EA +L++SMPM  +
Sbjct: 356 CACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEAN 415

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
              WGALLG C+ H D ++ E V ++L+ L+P + G +VLLSNI+++  +W+D  ++R +
Sbjct: 416 AIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSI 475

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RG+ K+PG S IE +G++HEFL GD +HP   +I   L E+ K LK  GY P T  V
Sbjct: 476 MSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYV 535

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
            FDI++EEKE  +  HSEKLAIAFGLI+ +P + IR++KNLR+C DCH A K ISR   R
Sbjct: 536 LFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGR 595

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFH F  GSCSC D+W
Sbjct: 596 EIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 219/467 (46%), Gaps = 60/467 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            Q   S K    + + ++  GL  D++  +++++FS +   F   +YS +IF   + PN 
Sbjct: 17  FQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFN---FGNTNYSHRIFHQTKEPNI 73

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F+FNTM+   +  +  Q++I +Y  M    +  D++T+P L +A A  L    G  +H  
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGL 133

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+KAG +SD +VN +L+++Y  CG +  A K+FD+ P  ++ +W +I++GY+      EA
Sbjct: 134 VVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREA 193

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                             I +F R      AC +F  M +KD+VSWS++I  Y  N + +
Sbjct: 194 ------------------IDMFRR------ACSVFDGMLEKDIVSWSSMIQGYASNGLPK 229

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M++     D   +V VL ACA L  ++ G     L  +        L  ALI
Sbjct: 230 EALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALI 289

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+ CG + +A ++F      D++ WN+ ISG    G V+ A                 
Sbjct: 290 DMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAA----------------- 332

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKN 455
                           LF +M+  GI PD  T V ++ ACTH   +D+G+ + ++  R  
Sbjct: 333 --------------FGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVF 378

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
            L         ++D+  + G +D A ++      E     W AL+ G
Sbjct: 379 TLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGG 425



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +L   K +HA + + GL  +S L   ++      G  + +  +FH T+E  +  +N +I 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G  +N    +S+E++  M+K G++P+  TF  +L AC  + L  +     + ++ +   E
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARL-LDSKLGIKLHGLVVKAGCE 140

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL------GACKK 607
            ++     +V L G+ G +  A ++ + +P   +VA W A++      G C++
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISGYIGVGKCRE 192


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/552 (46%), Positives = 360/552 (65%), Gaps = 42/552 (7%)

Query: 249 RLFKEMPKKDLVSWSALIS-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           R+F  + K ++  W+ +I  C E NE ++  L+ +  M+ H    ++    +VL AC++ 
Sbjct: 113 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH-FRPNKYTYPAVLKACSDA 171

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
            VV  G  VHA  VK G+    ++ ++ I MY+S G +  A ++ D              
Sbjct: 172 GVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD------------- 218

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
               K G V       DA+   D            +   F E L +F +MQ   IRP + 
Sbjct: 219 ----KGGEV-------DAVCMPD------------RKGCFMEALEIFHQMQKEKIRPRKF 255

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            L SV+SAC +L ALDQG+WIH Y ++N ++++ +LGT+L+DMY K G +D A EVF   
Sbjct: 256 VLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 315

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             K VSSWNA+I G AM+G A+ ++++FS+M    + PNEITFVGVL AC H GLV +G 
Sbjct: 316 SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGL 372

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             FNSM +E+ +EP  +HYGC+VDLLGRAG+L EAE+++ S+P  P  A WGALLGAC+K
Sbjct: 373 TIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRK 432

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG+ E+GERVG+ L+EL+P + G + LLSNI+A  GRW++V EVR +M  RG+   PG S
Sbjct: 433 HGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTS 492

Query: 668 MIE-ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           +I+   G +H+F+ GD +HPQ+ +I  MLD++ ++L++EGY PD  +V FDID+EEKET 
Sbjct: 493 IIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETA 552

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           +++HSEKLAI FGLI  SP   IRI+KNLR+C DCH+A K IS+ ++REI+VRDR R+HH
Sbjct: 553 VWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHH 612

Query: 787 FKHGSCSCMDFW 798
           F++G+CSC DFW
Sbjct: 613 FRNGACSCKDFW 624



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 215/460 (46%), Gaps = 54/460 (11%)

Query: 38  QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP--FIEMSYSFKIFAFLESPN 95
           Q   S     Q  + ++ TG + D++ A  L+K   ++    ++    S ++F F+  PN
Sbjct: 63  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 122

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            F++N M++  I+ N P +AI LY  M+  +   + YTYP + +A +    V EG  +H 
Sbjct: 123 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 182

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVS--------------- 199
           H++K G   D ++ ++ I MYA  G L  AR++ D+    +D V                
Sbjct: 183 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIF 242

Query: 200 --------------WNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRK 241
                           S+L+   N   +++ ++I+      +I    +   S++ ++ + 
Sbjct: 243 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 302

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G +  A  +F++M  K++ SW+A+I     +   E+A+ LF  M    +  +E+  V VL
Sbjct: 303 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVL 359

Query: 302 SACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           +ACA+  +V+ G ++ +++  + G+E  I     ++ +    G +T AEK+  +      
Sbjct: 360 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 419

Query: 361 IS-WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFME 416
            + W +++    K G+VE    +   ++E   ++   ++ + + YA+  ++ E   +   
Sbjct: 420 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 479

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           M+  GI+          +  T ++ L +G+ +H +I  +G
Sbjct: 480 MKERGIK---------TTPGTSIIDLGRGE-VHKFIIGDG 509


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/774 (36%), Positives = 427/774 (55%), Gaps = 71/774 (9%)

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           +S L K +   L   ++  + ++F  + +P+  ++N ++RAY        AI LY  ML+
Sbjct: 43  SSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLH 102

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
             V  + YTYP + +A +  L++ +G  IH H    G +SDV+V   L++ YA CG L  
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV-------- 236
           A++LF      D+V+WN+++AG       ++A  +  +M E  I  ++S IV        
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 237 -------------------------------LFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                          ++ +   +  A ++F  M  ++ VSWSA+
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           I  Y  ++  +EAL LF  MI    M    V + SVL ACA LT +  G  +H       
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH------- 335

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
             CYI                         G  LD++  N+++S Y KCG ++ A   FD
Sbjct: 336 --CYI----------------------IKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFD 371

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  KD VS+S ++SG  Q+   +  LS+F  MQ  GI PD  T++ V+ AC+HL AL  
Sbjct: 372 EMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQH 431

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H Y+   G   ++++   LIDMY K G +  A EVF+  +   + SWNA+IIG+ +
Sbjct: 432 GFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGI 491

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +GL  ++L +F ++   G+ P++ITF+ +L +C H GLV EG   F++M ++  + P  +
Sbjct: 492 HGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRME 551

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           H  CMVD+LGRAG++ EA   I +MP  PDV  W ALL AC+ H + E+GE V +K+  L
Sbjct: 552 HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSL 611

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P+  G  VLLSNI+++ GRWDD   +R      G+ KIPGCS IE NGI+H F+ GD++
Sbjct: 612 GPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQS 671

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           H Q+++I+  L+E+  ++K  GY  +   V  D+++EEKE  L  HSEKLAIAFG++ + 
Sbjct: 672 HLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLK 731

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PI + KNLR+C DCHTA KF++    REI VRD +RFHHFK+G+C+C DFW
Sbjct: 732 AGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 202/441 (45%), Gaps = 58/441 (13%)

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMI----VLFGRKGNVAEACRLFKEMPKKD 258
           +L   + + ++ EAK I+    +    A +S++     L+     V  A RLF E+P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           ++ W+ +I  Y  N  ++ A+ L+ +M+   V  ++     VL AC+ L  ++ G  +H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            A   G+E  + +  AL+  Y+ CG +  A++LF +  + D+++WN+MI+G         
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG--------- 184

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                               S Y   D   + + L M+MQ  GI P+ +T+V V+     
Sbjct: 185 -------------------CSLYGLCD---DAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             AL  GK +H Y  +       ++GT L+DMY K  C+  A ++F     +   SW+A+
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 499 IIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           I G+  +    ++LE+F +M  K  + P  +T   VL AC  +  +  G +    +I+  
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-- 340

Query: 558 RLEPNSKHYGCMVDLL---------GRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
                    G ++D+L          + G++ +A    + M    D  ++ A++  C ++
Sbjct: 341 --------LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQN 391

Query: 609 GDHEMGERVGR--KLVELQPD 627
           G+  +   + R  +L  + PD
Sbjct: 392 GNAAVALSIFRMMQLSGIDPD 412



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 170/365 (46%), Gaps = 48/365 (13%)

Query: 331 LQNALIHMYSSC---GEITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           ++N  +H+  +C     +T A+K+         N D    + +   YL C  V  AR LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
           D +    V+ W+ +I  YA +  F   + L+  M H G+RP++ T   V+ AC+ L+A++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  IH++ +  GL+ +  + T L+D Y K G +  A  +F     + V +WNA+I G +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACRHMGLVDEGH-----RHF-NSMI 554
           + GL D ++++  +M++ G+ PN  T VGVL   G  + +G     H     R F N ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 555 QEHRLEPNSKHYGCMV------DLLG---------------RAGMLKEAEELIESM---- 589
               L        C++      D++G                +  +KEA EL + M    
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKD 306

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN----IHASKGRW 645
            M P   T G++L AC K  D   G ++   +++L    D   +LL N    ++A  G  
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLD---ILLGNTLLSMYAKCGVI 363

Query: 646 DDVLE 650
           DD + 
Sbjct: 364 DDAIR 368


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/787 (35%), Positives = 444/787 (56%), Gaps = 78/787 (9%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           +++ G +   F ++RL+    +L    ++S S   F  +   + + +N+M+ AY+     
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLG---DVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHF 198

Query: 113 QQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
            +AI C Y+L+L + +  D YT+P + +A     ++ +G+ IH    K GF  +V+V  +
Sbjct: 199 HEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVFVAAS 255

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+MY+  G    AR LFD+ P  D+ SWN++++G +   N  +A  + ++M        
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E ++  SN++I ++ + GN+ +A + F+
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           +M   D+VSW+++I+ YEQN+    A   F+ M  +    D + +VS+ S  A     K 
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKN 435

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
             SVH   ++ G                          L +     D++  N+++  Y K
Sbjct: 436 SRSVHGFIMRRGW-------------------------LME-----DVVIGNAVVDMYAK 465

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVS 431
            G ++ A  +F+ ++ KDV+SW+T+I+GYAQ+   SE + ++  M+    I P++ T VS
Sbjct: 466 LGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++ A  H+ AL QG  IH  + K  L ++  + T LID+Y K G + +A+ +F+   ++ 
Sbjct: 526 ILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQES 585

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             +WNA+I    ++G A+K+L++F EM   GV P+ +TFV +L AC H G V+EG   F 
Sbjct: 586 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
            ++QE+ ++P+ KHYGCMVDLLGRAG L+ A   I+ MP+ PD + WGALLGAC+ HG+ 
Sbjct: 646 -LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNI 704

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           E+G+    +L E+   + G++VLLSNI+A+ G+W+ V +VR +   RG+ K PG S IE 
Sbjct: 705 ELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
           N  +  F  G+++HP+  EI   L  +  K+K  GY PD   V  D++++EKE  L  HS
Sbjct: 765 NRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 824

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           E+LAIAFG+I+  P +PIRI KNLR+C DCH A KFISR   REIVVRD +RFHHFK G 
Sbjct: 825 ERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGI 884

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 885 CSCGDYW 891



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 258/540 (47%), Gaps = 78/540 (14%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H  ++ AG    ++++  L+N+YA  GD+S +R  FD+ P  D+ +WNS+++ YV+ 
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 211 DNVEEA--------------KFIYNKMP-----------------------ERNIIASNS 233
            +  EA                 Y   P                       + N+  + S
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAAS 255

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ R G    A  LF +MP +D+ SW+A+IS   QN    +AL +   M    + ++
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V VVS+L  C  L  +     +H   +K G+E  + + NALI+MY+  G +  A K F 
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D++SWNS                               +I+ Y Q+D        
Sbjct: 376 QMFITDVVSWNS-------------------------------IIAAYEQNDDPVTAHGF 404

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYM 472
           F++MQ +G +PD  TLVS+ S           + +H +I + G L  + ++G  ++DMY 
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFV 531
           KLG +D+A +VF     K V SWN LI G+A NGLA +++E++  M++   + PN+ T+V
Sbjct: 465 KLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L A  H+G + +G R    +I+ + L  +     C++D+ G+ G L +A  L   +P 
Sbjct: 525 SILPAYAHVGALQQGMRIHGRVIKTN-LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 583

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS----KGRW 645
              V TW A++     HG  E   ++  ++++  ++PDH  F  LLS    S    +G+W
Sbjct: 584 ESSV-TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/881 (33%), Positives = 455/881 (51%), Gaps = 131/881 (14%)

Query: 28  INLSILETH----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE--- 80
           I + +  +H    L++C+S     QI  Q+I +GL++       +   +    PFI    
Sbjct: 31  IGVDVYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRS 90

Query: 81  --------------MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
                           Y+  +   +       +N ++R +I++     AI +   ML   
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
              D++T P + +A     S   G   H  +   GF+S+V++ N L+ MY+ CG L  A 
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 187 KLFDE---SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------ERNIIAS--- 231
            +FDE     + D++SWNSI++ +V + N   A  +++KM          ER+ I S   
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 232 ---------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                            N++I  + + G +  A ++F  M  KD
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE------------------------ 294
           +VSW+A+++ Y Q+  +E A  LF NM    + +D                         
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 295 -----------VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
                      V ++SVLSACA+L     GT +HA ++K    C + L N          
Sbjct: 391 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK---NCLLTLDNDF-------- 439

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD--AMIEKDVVSWSTMISGY 401
                      G + DL+ +N++I  Y KC S + AR++FD   + E++VV+W+ MI G+
Sbjct: 440 ----------GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 489

Query: 402 AQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           AQ+   ++ L LF+EM  + +G+ P+  T+  ++ AC HL A+  GK IHAY+ ++    
Sbjct: 490 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 549

Query: 460 NS--ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +S   +   LIDMY K G VD A  VF    +K   SW +++ G+ M+G   ++L++F +
Sbjct: 550 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 609

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M+K+G  P++ITF+ VL AC H G+VD+G  +F+SM  ++ L P ++HY C +DLL R+G
Sbjct: 610 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSG 669

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L +A   ++ MPM P    W ALL AC+ H + E+ E    KLVE+  ++DG + L+SN
Sbjct: 670 RLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 729

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+A+ GRW DV  +R +M + G+ K PGCS ++       F  GDR+HP   +I  +L+ 
Sbjct: 730 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 789

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +  ++K  GY P+T     D+D+EEK   L  HSEKLA+A+GL+T SP  PIRI KNLR+
Sbjct: 790 LIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRV 849

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A  +IS+  D EIVVRD  RFHHFK+GSCSC  +W
Sbjct: 850 CGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/787 (35%), Positives = 444/787 (56%), Gaps = 78/787 (9%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           +++ G +   F ++RL+    +L    ++S S   F  +   + + +N+M+ AY+     
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLG---DVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHF 198

Query: 113 QQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
            +AI C Y+L+L + +  D YT+P + +A     ++ +G+ IH    K GF  +V+V  +
Sbjct: 199 HEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAAS 255

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+MY+  G    AR LFD+ P  D+ SWN++++G +   N  +A  + ++M        
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E ++  SN++I ++ + GN+ +A + F+
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           +M   D+VSW+++I+ YEQN+    A   F+ M  +    D + +VS+ S  A     K 
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKN 435

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
             SVH   ++ G                          L +     D++  N+++  Y K
Sbjct: 436 SRSVHGFIMRRGW-------------------------LME-----DVVIGNAVVDMYAK 465

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVS 431
            G ++ A  +F+ +  KDV+SW+T+I+GYAQ+   SE + ++  M+    I P++ T VS
Sbjct: 466 LGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++ A  H+ AL QG  IH  + K  L ++  + T LID+Y K G + +A+ +F+   ++ 
Sbjct: 526 ILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQES 585

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             +WNA+I    ++G A+K+L++F EM   GV P+ +TFV +L AC H G V+EG   F 
Sbjct: 586 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
            ++QE+ ++P+ KHYGCMVDLLGRAG L+ A + I+ MP+ PD + WGALLGAC+ HG+ 
Sbjct: 646 -LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNI 704

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           E+G+    +L E+   + G++VLLSNI+A+ G+W+ V +VR +   RG+ K PG S IE 
Sbjct: 705 ELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
           N  +  F  G+++HP+  EI   L  +  K+K  GY PD   V  D++++EKE  L  HS
Sbjct: 765 NRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 824

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           E+LAIAFG+I+  P +PIRI KNLR+C DCH A KFISR   REIVVRD +RFHHFK G 
Sbjct: 825 ERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGI 884

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 885 CSCGDYW 891



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/540 (28%), Positives = 258/540 (47%), Gaps = 78/540 (14%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H  ++ AG    ++++  L+N+YA  GD+S +R  FD+ P  D+ +WNS+++ YV+ 
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 211 DNVEEA--------------KFIYNKMP-----------------------ERNIIASNS 233
            +  EA                 Y   P                       + N+  + S
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAAS 255

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ R G    A  LF +MP +D+ SW+A+IS   QN    +AL +   M    + ++
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V VVS+L  C  L  +     +H   +K G+E  + + NALI+MY+  G +  A K F 
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D++SWNS                               +I+ Y Q+D        
Sbjct: 376 QMFITDVVSWNS-------------------------------IIAAYEQNDDPVTAHGF 404

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYM 472
           F++MQ +G +PD  TLVS+ S           + +H +I + G L  + ++G  ++DMY 
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFV 531
           KLG +D+A +VF     K V SWN LI G+A NGLA +++E++  M++   + PN+ T+V
Sbjct: 465 KLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L A  H+G + +G +    +I+ + L  +     C++D+ G+ G L +A  L   +P 
Sbjct: 525 SILPAYAHVGALQQGMKIHGRVIKTN-LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 583

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS----KGRW 645
              V TW A++     HG  E   ++  ++++  ++PDH  F  LLS    S    +G+W
Sbjct: 584 ESSV-TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/728 (36%), Positives = 403/728 (55%), Gaps = 70/728 (9%)

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
           N   +AI +    L   +  D++ Y  + +    +  +   K +HD ++K+  + + +V 
Sbjct: 7   NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----- 224
           N L+++Y  CG L  AR +FD        SWN+++AGYV   + E+A  ++ +M      
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126

Query: 225 ----------------------------------ERNIIASNSMIVLFGRKGNVAEACRL 250
                                             E ++    +++ ++G+ G++ EA R+
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRI 186

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F  +   D++SW+ +I  Y Q+   +EA  L + M       + +  VS+L+ACA+   +
Sbjct: 187 FDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL 246

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           K    VH  A+  G+E  + +  AL+ M                               Y
Sbjct: 247 KWVKRVHRHALDAGLELDVRVGTALVQM-------------------------------Y 275

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            K GS++ AR +FD M  +DVVSW+ MI  +A+H +  E   LF++MQ  G +PD    +
Sbjct: 276 AKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFL 335

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S+++AC    AL+  K IH +   +GL+++  +GT L+ MY K G +D+A  VF   + +
Sbjct: 336 SILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR 395

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V SWNA+I G A +GL   +LE+F  M   GV P+ +TFV VL AC H GLVDEG   +
Sbjct: 396 NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQY 455

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            +M Q + +EP+  H  CMVDLLGRAG L EA+  I++M + PD ATWGALLG+C+ +G+
Sbjct: 456 LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGN 515

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            E+GE V ++ ++L P +   +VLLSNI+A  G+WD V  VR MM  RG+ K PG S IE
Sbjct: 516 VELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIE 575

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
            +  IH+FL  D +HP+  EI+   D++ +K+K EGY PDT  V  + + ++KE  +  H
Sbjct: 576 VDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSH 635

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SEKLAI +GL+   P NPIR+ KNLR+C DCH A K IS+   REI+VRD +RFHHFK G
Sbjct: 636 SEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDG 695

Query: 791 SCSCMDFW 798
            CSC D+W
Sbjct: 696 VCSCGDYW 703



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/533 (24%), Positives = 230/533 (43%), Gaps = 111/533 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  L   +G  +N M+  Y++    + A+ L++ M +  V  +  TY ++ +A A   +
Sbjct: 85  VFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSA 144

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H  +   G +SDV V   L+ MY  CG ++ AR++FD     D++SW  ++  
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGA 204

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
           Y  + N +EA  +  +M                                        E +
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELD 264

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +    +++ ++ + G++ +A  +F  M  +D+VSW+ +I  + ++    EA  LF+ M  
Sbjct: 265 VRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
                D ++ +S+L+ACA+   ++    +H  A+  G+E  + +  AL+HMYS  G I  
Sbjct: 325 EGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDD 384

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A  +FD     +++SWN+M                               ISG AQH   
Sbjct: 385 ARVVFDRMKVRNVVSWNAM-------------------------------ISGLAQHGLG 413

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            + L +F  M  HG++PD  T V+V+SAC+H   +D+G       R   L +  + G   
Sbjct: 414 QDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEG-------RSQYLAMTQVYGI-- 464

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
                                E  VS  N ++    + G A + +E    +    V P+E
Sbjct: 465 ---------------------EPDVSHCNCMV---DLLGRAGRLMEAKLFIDNMAVDPDE 500

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE---PNSKHYGCMVDLLGRAG 577
            T+  +LG+CR  G V+ G      ++ + RL+    N+  Y  + ++   AG
Sbjct: 501 ATWGALLGSCRTYGNVELG-----ELVAKERLKLDPKNAATYVLLSNIYAEAG 548



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 50/387 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF  L + +   +  M+ AY Q    ++A  L   M       +  TY  +  A A   
Sbjct: 185 RIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++   K +H H L AG + DV V   L+ MYA  G +  AR +FD   V D+VSWN ++ 
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIG 304

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
            +       EA  ++ +M                                        E 
Sbjct: 305 AFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEV 364

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++    +++ ++ + G++ +A  +F  M  +++VSW+A+IS   Q+ + ++AL +F  M 
Sbjct: 365 DVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMT 424

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCGEI 345
            H V  D V  V+VLSAC++  +V  G S + A+    GIE  ++  N ++ +    G +
Sbjct: 425 AHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRL 484

Query: 346 TTAEKLFD-AGHNLDLISWNSMISGYLKCGSVE------KARALFDAMIEKDVVSWSTMI 398
             A+   D    + D  +W +++      G+VE      K R   D    K+  ++  + 
Sbjct: 485 MEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDP---KNAATYVLLS 541

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPD 425
           + YA+  ++     +   M+  GIR +
Sbjct: 542 NIYAEAGKWDMVSWVRTMMRERGIRKE 568


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/881 (33%), Positives = 455/881 (51%), Gaps = 131/881 (14%)

Query: 28  INLSILETH----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE--- 80
           I + +  +H    L++C+S     QI  Q+I +GL++       +   +    PFI    
Sbjct: 38  IGVDVYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRS 97

Query: 81  --------------MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
                           Y+  +   +       +N ++R +I++     AI +   ML   
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
              D++T P + +A     S   G   H  +   GF+S+V++ N L+ MY+ CG L  A 
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 187 KLFDE---SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------ERNIIAS--- 231
            +FDE     + D++SWNSI++ +V + N   A  +++KM          ER+ I S   
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 232 ---------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                            N++I  + + G +  A ++F  M  KD
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE------------------------ 294
           +VSW+A+++ Y Q+  +E A  LF NM    + +D                         
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 295 -----------VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
                      V ++SVLSACA+L     GT +HA ++K    C + L N          
Sbjct: 398 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK---NCLLTLDNDF-------- 446

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD--AMIEKDVVSWSTMISGY 401
                      G + DL+ +N++I  Y KC S + AR++FD   + E++VV+W+ MI G+
Sbjct: 447 ----------GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 496

Query: 402 AQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           AQ+   ++ L LF+EM  + +G+ P+  T+  ++ AC HL A+  GK IHAY+ ++    
Sbjct: 497 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 556

Query: 460 NS--ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +S   +   LIDMY K G VD A  VF    +K   SW +++ G+ M+G   ++L++F +
Sbjct: 557 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 616

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M+K+G  P++ITF+ VL AC H G+VD+G  +F+SM  ++ L P ++HY C +DLL R+G
Sbjct: 617 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSG 676

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L +A   ++ MPM P    W ALL AC+ H + E+ E    KLVE+  ++DG + L+SN
Sbjct: 677 RLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 736

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+A+ GRW DV  +R +M + G+ K PGCS ++       F  GDR+HP   +I  +L+ 
Sbjct: 737 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 796

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +  ++K  GY P+T     D+D+EEK   L  HSEKLA+A+GL+T SP  PIRI KNLR+
Sbjct: 797 LIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRV 856

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A  +IS+  D EIVVRD  RFHHFK+GSCSC  +W
Sbjct: 857 CGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/451 (50%), Positives = 316/451 (70%), Gaps = 2/451 (0%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV--VSWSTMISGYAQHDQF 407
           ++   G   D+I    ++  Y K G VE+AR LFD M E++   V+W+TMIS Y Q  +F
Sbjct: 55  QIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEF 114

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              +S+F +MQ   ++P E T+VS++SAC HL ALD G+WIH YIR   LKI+ +LG  L
Sbjct: 115 GTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNAL 174

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G ++ A++VFHG   K +  WN++I+G  MNG  ++++  F  M+K G+ P+ 
Sbjct: 175 IDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDG 234

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TFVG+L  C H GL+  G R+F+ M+  + LEP  +HYGCMVDLLGRAG LKEA ELI 
Sbjct: 235 VTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR 294

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           +MPM P+    G+LL AC+ H D ++GE+V ++L+EL P   G +V LSN++AS  RWDD
Sbjct: 295 AMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDD 354

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V   R +M++RGV K PGCS IE N I+HEF+AGD +HPQ  +I+  LDE+AK+LK +G+
Sbjct: 355 VNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGH 414

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            P+T  V  DI++EEKE  +  HSE++A+AFGL++  P   IR++KNLR C+DCH+A K 
Sbjct: 415 VPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKL 474

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS AF REI+VRDR RFHHF++GSCSC D+W
Sbjct: 475 ISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 160/401 (39%), Gaps = 96/401 (23%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+R  ++  V    +  Y  ML N+V     ++ L+ ++ A+      G+  H  ++K G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F+ D+ +   L++ YA                            GYV     EEA+ +++
Sbjct: 61  FEYDMILQTGLLDFYAK--------------------------HGYV-----EEARNLFD 89

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
            M ERN   SNS                          V+W+ +IS Y Q   +  A+ +
Sbjct: 90  NMTERN---SNS--------------------------VTWNTMISAYVQCGEFGTAISM 120

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M    V   EV +VS+LSACA+L  +  G  +H       ++  + L NALI MY  
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCK 180

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG +  A  +F      ++  WNS+I G    G  E                        
Sbjct: 181 CGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE------------------------ 216

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKIN 460
                  E ++ F+ M+  GI+PD  T V ++S C+H   L  G ++    +   GL+  
Sbjct: 217 -------EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 269

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
                 ++D+  + G +  ALE+      K     N++++G
Sbjct: 270 VEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 4/204 (1%)

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L  +  M  + + P + +   ++ +C        G+  H  I K G + + IL T L+D 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 471 YMKLGCVDNALEVFHGTEEKGVSS--WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           Y K G V+ A  +F    E+  +S  WN +I  +   G    ++ MF +M+   V P E+
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T V +L AC H+G +D G    +  I+  RL+ +      ++D+  + G L+ A ++   
Sbjct: 135 TMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHG 193

Query: 589 MPMSPDVATWGALLGACKKHGDHE 612
           +    ++  W +++     +G  E
Sbjct: 194 LS-RKNIFCWNSIIVGLGMNGRGE 216



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 12/231 (5%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +NTM+ AY+Q      AI +++ M + NV     T   L  A A   ++  G+ IH
Sbjct: 97  NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 156

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            ++       DV + N LI+MY  CG L AA  +F      ++  WNSI+ G       E
Sbjct: 157 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 216

Query: 215 EAKFIYNKMPERNIIASNSMIV--LFG--RKGNVAEACRLFKEM-----PKKDLVSWSAL 265
           EA   +  M +  I       V  L G    G ++   R F EM      +  +  +  +
Sbjct: 217 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 276

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           +    +    +EAL L   M    +  + +V+ S+L AC      K G  V
Sbjct: 277 VDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRACQIHKDTKLGEQV 324


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/784 (34%), Positives = 433/784 (55%), Gaps = 66/784 (8%)

Query: 34  ETHLQKCQS----------FKQFTQILSQMILTGLIADTFAA-SRLIKFST--------D 74
           +T +QK Q+           K++   +S  + TG   +      R+ ++S+         
Sbjct: 45  QTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISG 104

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
            L   E   + K+F  +   +   +N M++ Y++     +A  L+++M   +V   N   
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
              AQ       V + + + D + +    +DV  N  L++ Y     +  A  LF     
Sbjct: 165 SGYAQNGC----VDDARSVFDRMPEK---NDVSWN-ALLSAYVQNSKMEEACMLFKSREN 216

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
             LVSWN +L G+V    + EA+  ++ M  R++++ N++I  + + G + EA +LF E 
Sbjct: 217 WALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P +D+ +W+A++S Y QN M EEA  LF  M +     +EV                   
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVS------------------ 314

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
                             NA++  Y     +  A++LFD     ++ +WN+MI+GY +CG
Sbjct: 315 -----------------WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            + +A+ LFD M ++D VSW+ MI+GY+Q     E L LF++M+  G R + ++  S +S
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            C  +VAL+ GK +H  + K G +    +G  L+ MY K G ++ A ++F     K + S
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN +I G++ +G  + +L  F  MK+ G+ P++ T V VL AC H GLVD+G ++F +M 
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           Q++ + PNS+HY CMVDLLGRAG+L++A  L+++MP  PD A WG LLGA + HG+ E+ 
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           E    K+  ++P++ G +VLLSN++AS GRW DV ++R  M  +GV K+PG S IE    
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
            H F  GD  HP+ +EI   L+E+  ++K  GY   T  V  D+++EEKE  +  HSE+L
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERL 717

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+A+G++ +S   PIR++KNLR+C DCH A K+++R   R I++RD +RFHHFK GSCSC
Sbjct: 718 AVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSC 777

Query: 795 MDFW 798
            D+W
Sbjct: 778 GDYW 781


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/809 (35%), Positives = 440/809 (54%), Gaps = 75/809 (9%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           L +LE  +Q  +S  +  +I    +     AD+   S L K +   L   ++  + ++F 
Sbjct: 12  LHLLEACIQS-KSLTEAKKIHQHFLKNTSNADS---SVLHKLTRLYLSCNQVVLARRLFD 67

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            + +P+  ++N ++RAY        AI LY  ML+  V  + YTYP + +A +  L++ +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G  IH H    G +SDV+V   L++ YA CG L  A++LF      D+V+WN+++AG   
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIV--------------------------------- 236
               ++A  +  +M E  I  ++S IV                                 
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 237 ------LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
                 ++ +   +  A ++F  M  ++ VSWSA+I  Y  ++  +EAL LF  MI    
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 291 M-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           M    V + SVL ACA LT +  G  +H   +K+G                         
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXV----------------------- 344

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                   LD++  N+++S Y KCG ++ A   FD M  KD VS+S ++SG  Q+   + 
Sbjct: 345 --------LDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAV 396

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            LS+F  MQ  GI PD  T++ V+ AC+HL AL  G   H Y+   G   ++++   LID
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +  A EVF+  +   + SWNA+IIG+ ++GL  ++L +F ++   G+ P++IT
Sbjct: 457 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 516

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+ +L +C H GLV EG   F++M ++  + P  +H  CMVD+LGRAG++ EA   I +M
Sbjct: 517 FICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM 576

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  PDV  W ALL AC+ H + E+GE V +K+  L P+  G  VLLSNI+++ GRWDD  
Sbjct: 577 PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAA 636

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            +R      G+ KIPGCS IE NGI+H F+ GD++H Q+++I+  L+E+  ++K  GY  
Sbjct: 637 HIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQA 696

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           +   V  D+++EEKE  L  HSEKLAIAFG++ +    PI + KNLR+C DCH A KF++
Sbjct: 697 ECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMT 756

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               REI VRD +RFHHFK+G+C+C DFW
Sbjct: 757 VITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 255/578 (44%), Gaps = 86/578 (14%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           +NY +  L +A     S+ E K IH H LK   ++D  V + L  +Y  C  +  AR+LF
Sbjct: 9   NNYLH--LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------P------------------- 224
           DE P   ++ WN I+  Y      + A  +Y+ M      P                   
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 225 --------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                         E ++    +++  + + G + EA RLF  M  +D+V+W+A+I+   
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
              + ++A+ L M M +  +  +   +V VL        +  G ++H   V+   +  + 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +   L+ MY+ C  +  A K+FD     + +SW++MI GY+    +++A  LFD MI KD
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +                               P   TL SV+ AC  L  L +G+ +H 
Sbjct: 307 AMD------------------------------PTPVTLGSVLRACAKLTDLSRGRKLHC 336

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           YI K G  ++ +LG TL+ MY K G +D+A+  F     K   S++A++ G   NG A  
Sbjct: 337 YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAV 396

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +F  M+ SG+ P+  T +GVL AC H+  +  G      +I       ++     ++
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-GFATDTLICNALI 455

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG-ERVG----RKLVELQ 625
           D+  + G +  A E+   M    D+ +W A++     +G H +G E +G       + L+
Sbjct: 456 DMYSKCGKISFAREVFNRMDRH-DIVSWNAMIIG---YGIHGLGMEALGLFHDLLALGLK 511

Query: 626 PDHDGFHVLLSNIHAS----KGR-WDDVLEVRGMMVRR 658
           PD   F  LLS+   S    +GR W D +     +V R
Sbjct: 512 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPR 549



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 171/365 (46%), Gaps = 48/365 (13%)

Query: 331 LQNALIHMYSSCGE---ITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           ++N  +H+  +C +   +T A+K+         N D    + +   YL C  V  AR LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
           D +    V+ W+ +I  YA +  F   + L+  M H G+RP++ T   V+ AC+ L+A++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  IH++ +  GL+ +  + T L+D Y K G +  A  +F     + V +WNA+I G +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACRHMGLVDEGH-----RHF-NSMI 554
           + GL D ++++  +M++ G+ PN  T VGVL   G  + +G     H     R F N ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 555 QEHRLEPNSKHYGCMV------DLLG---------------RAGMLKEAEELIESM---- 589
               L        C++      D++G                +  +KEA EL + M    
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN----IHASKGRW 645
            M P   T G++L AC K  D   G ++   +++L    D   +LL N    ++A  G  
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD---ILLGNTLLSMYAKCGVI 363

Query: 646 DDVLE 650
           DD + 
Sbjct: 364 DDAIR 368


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/714 (37%), Positives = 414/714 (57%), Gaps = 18/714 (2%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++FA +   +   +N M+  Y        A  L++ +       DNY+Y  L  A A+  
Sbjct: 59  RLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALAVSS 114

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ + + + D +     DS  Y  N +I+ +A  G +S AR  FD +P  D VSWN +LA
Sbjct: 115 SLADARGLFDEMPVR--DSVTY--NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLA 170

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV    VEEA+ ++N   E ++I+ N+++  + + G ++EA  LF  MP +D+VSW+ +
Sbjct: 171 AYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIG 324
           +S Y +     EA  LF    D   + D     +V+S  A   +++    V  A+  +  
Sbjct: 231 VSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 286

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +       NA++  Y     +  A++LF+     ++ SWN+M++GY + G +E+A+A+FD
Sbjct: 287 VS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M +KD VSW+ M++ Y+Q     ETL LF+EM   G   + +    V+S C  + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  +H  + + G  +   +G  L+ MY K G +++A   F   EE+ V SWN +I G+A 
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G   ++LE+F  M+ +   P++IT VGVL AC H GLV++G  +F SM  +  +    +
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DLLGRAG L EA +L++ MP  PD   WGALLGA + H + E+G     K+ EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P++ G +VLLSNI+AS G+W D  ++R MM  RGV K+PG S IE    +H F AGD  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP+  +I   L+++  ++K  GY   T  V  D+++EEKE  L  HSEKLA+A+G++ I 
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIP 701

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P  PIR++KNLR+C DCH A K+IS    R I++RD +RFHHF+ GSCSC D+W
Sbjct: 702 PGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 212/456 (46%), Gaps = 34/456 (7%)

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            + +V  +N  I  +   G ++ A +LF   P     ++N++LAGY     +  A  ++ 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
            +P  +  + N+++       ++A+A  LF EMP +D V+++ +IS +  + +    + L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL----VSL 149

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYS 340
             +  D     D V    +L+A      V+ G    A  +     E  +   NAL+  Y 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAA-----YVRNGRVEEARGLFNSRTEWDVISWNALMSGYV 204

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             G+++ A +LFD     D++SWN M+SGY + G + +AR LFDA   +DV +W+ ++SG
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           YAQ+    E   +F  M       +  +  ++++A      +D+ K +      N +   
Sbjct: 265 YAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELF-----NMMPCR 315

Query: 461 SILG-TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           ++    T++  Y + G ++ A  VF    +K   SW A++  ++  G ++++L++F EM 
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVD-----LL 573
           + G   N   F  VL  C  +  ++ G       +Q H RL       GC V      + 
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECG-------MQLHGRLIRAGYGVGCFVGNALLAMY 428

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + G +++A    E M    DV +W  ++    +HG
Sbjct: 429 FKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/697 (38%), Positives = 406/697 (58%), Gaps = 76/697 (10%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNSI 203
           S+ + K  H  +L+     +   ++ LI+  A+   GDL+ ARKLF +    D    N++
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 204 LAGYVNADNVEEAKFIYNKMPER------------------------------------- 226
           + GY  + N  EA  +Y  M ER                                     
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF-- 282
             ++   N++I  +   G+   AC +F E   +D+V+W+ +I+ +    + E+A  L   
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           M  +D+ +  DEV +VS++ ACA L  ++ G  +H+ + ++G++  + + NA++ MY   
Sbjct: 203 MTKLDN-LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC-- 259

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                                        KC  +E A+ +F+ + EKDV+SW++M+SG A
Sbjct: 260 -----------------------------KCDDIESAQEVFNRIREKDVLSWTSMLSGLA 290

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           +   F E L+LF +MQ + I  DE TLV V+SAC    ALDQGK+IH  I K  +  + +
Sbjct: 291 KSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLV 350

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           L T L+DMY K G +D AL+VF     + V +WNALI G AM+G  + ++ +F +M+   
Sbjct: 351 LETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDK 410

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P+++TF+ +L AC H GLVDEG   F +M  + ++EP  +HYGC+VDLL RA  + +A
Sbjct: 411 LMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDA 470

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
              IE+MP+  +   W  LLGAC+  G  ++ E++GR+++EL+PD  G +V+LSN++A  
Sbjct: 471 LAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGV 530

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            +WD  L++R  M  +G+ K PGCS IE NG+IH+F+AGDR+H Q  +I  M++EM +++
Sbjct: 531 SQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRV 590

Query: 703 KLE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
            L+ G+ P T  V FDI++EEKE +LF HSEKLAIA GLI+    +PIRI+KNLR+CNDC
Sbjct: 591 NLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDC 650

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H+  K  S+ ++REIV RDR RFHHFK GSCSCMDFW
Sbjct: 651 HSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/554 (43%), Positives = 358/554 (64%), Gaps = 2/554 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSAC 304
           A ++     K  L + +++I  + ++ + E++   +  ++   + +  D   V  ++ AC
Sbjct: 59  ANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQAC 118

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             L + + G  VH + ++ G +   ++Q  LI +Y+  G + +  K+F++    D +   
Sbjct: 119 TGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRT 178

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +M++   +CG V  AR LF+ M E+D ++W+ MISGYAQ  +  E L++F  MQ  G++ 
Sbjct: 179 AMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKV 238

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +   ++SV+SACT L ALDQG+W H+YI +N +KI   L TTL+D+Y K G ++ A+EVF
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVF 298

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            G EEK V +W++ + G AMNG  +K LE+FS MK+ GVTPN +TFV VL  C  +G VD
Sbjct: 299 WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 358

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG RHF+SM  E  +EP  +HYGC+VDL  RAG L++A  +I+ MPM P  A W +LL A
Sbjct: 359 EGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHA 418

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
            + + + E+G    +K++EL+  + G +VLLSNI+A    WD+V  VR  M  +GV K P
Sbjct: 419 SRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQP 478

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS++E NG +HEF  GD++HP+  +ID +  +++++L+L GY  DT  V FDID+EEKE
Sbjct: 479 GCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKE 538

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEK AIAFG++++    PIRI+KNLR+C DCH  +  IS+ F+REI+VRDR+RF
Sbjct: 539 DALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRF 598

Query: 785 HHFKHGSCSCMDFW 798
           HHFK G CSC  FW
Sbjct: 599 HHFKDGHCSCNGFW 612



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 208/464 (44%), Gaps = 71/464 (15%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +FK+  QI +++ + G + D       +K +  L     + Y+ +I    E P  F  N+
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVK-AVALSDHKYLDYANQILDRSEKPTLFALNS 76

Query: 102 MMRAYIQRNVPQQAICLYKLMLN--NNVGVDNYTYPLLAQA-SALRLSVFEGKLIHDHVL 158
           M+RA+ +  VP+++   Y+ +L+  N++  DNYT   L QA + LR+    G  +H   +
Sbjct: 77  MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRE-TGLQVHGMTI 135

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + GFD+D +V   LI++YA  G L +  K+F+  P  D V   +++       +V  A+ 
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++  MPER+ IA N+M                               IS Y Q     EA
Sbjct: 196 LFEGMPERDPIAWNAM-------------------------------ISGYAQVGESREA 224

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L +F  M    V V+ V ++SVLSAC  L  +  G   H+   +  I+  + L   L+ +
Sbjct: 225 LNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDL 284

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y+ CG++  A ++F      ++ +W+S ++G    G  EK                    
Sbjct: 285 YAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKC------------------- 325

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
                       L LF  M+  G+ P+  T VSV+  C+ +  +D+G+  H    +N   
Sbjct: 326 ------------LELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRNEFG 372

Query: 459 INSILG--TTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALI 499
           I   L     L+D+Y + G +++A+ +      K   + W++L+
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL 416


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/714 (37%), Positives = 413/714 (57%), Gaps = 18/714 (2%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++FA +   +   +N M+  Y        A  L++ +       DNY+Y  L  A A+  
Sbjct: 59  RLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALAVSS 114

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ + + + D +     DS  Y  N +I+ +A  G +S AR  FD +P  D VSWN +LA
Sbjct: 115 SLADARGLFDEMPVR--DSVTY--NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLA 170

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV    VEEA+ ++N   E + I+ N+++  + + G ++EA  LF  MP +D+VSW+ +
Sbjct: 171 AYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIG 324
           +S Y +     EA  LF    D   + D     +V+S  A   +++    V  A+  +  
Sbjct: 231 VSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 286

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +       NA++  Y     +  A++LF+     ++ SWN+M++GY + G +E+A+A+FD
Sbjct: 287 VS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M +KD VSW+ M++ Y+Q     ETL LF+EM   G   + +    V+S C  + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  +H  + + G  +   +G  L+ MY K G +++A   F   EE+ V SWN +I G+A 
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G   ++LE+F  M+ +   P++IT VGVL AC H GLV++G  +F SM  +  +    +
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DLLGRAG L EA +L++ MP  PD   WGALLGA + H + E+G     K+ EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P++ G +VLLSNI+AS G+W D  ++R MM  RGV K+PG S IE    +H F AGD  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP+  +I   L+++  ++K  GY   T  V  D+++EEKE  L  HSEKLA+A+G++ I 
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIP 701

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P  PIR++KNLR+C DCH A K+IS    R I++RD +RFHHF+ GSCSC D+W
Sbjct: 702 PGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 198/447 (44%), Gaps = 53/447 (11%)

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           +++  N  +  ++ A  V +A+ ++  MP R+    N+M+  +   G +  A  LF+ +P
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           + D  S++ L+     +    +A  LF    D   + D V    ++S+ AN  +V     
Sbjct: 97  RPDNYSYNTLLHALAVSSSLADARGLF----DEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
              LA +     +    N ++  Y   G +  A  LF++    D ISWN+++SGY++ G 
Sbjct: 153 YFDLAPEKDAVSW----NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGK 208

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           + +AR LFD M  +DVVSW+ M+SGYA+     E   LF       +R D  T  +V+S 
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF---DAAPVR-DVFTWTAVVSG 264

Query: 436 CTHLVALDQGKWI-HAYIRKNGLKINSILGT--------------------------TLI 468
                 L++ + +  A   +N +  N+++                            T++
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
             Y + G ++ A  VF    +K   SW A++  ++  G ++++L++F EM + G   N  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVD-----LLGRAGMLKEA 582
            F  VL  C  +  ++ G       +Q H RL       GC V      +  + G +++A
Sbjct: 385 AFACVLSTCADIAALECG-------MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 583 EELIESMPMSPDVATWGALLGACKKHG 609
               E M    DV +W  ++    +HG
Sbjct: 438 RNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 39/311 (12%)

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +E  +   N  I  +   G +  AE+LF A       ++N+M++GY   G +  A +LF 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH-LVAL- 442
           A+   D  S++T++   A     ++   LF EM    +R      V + S   H LV+L 
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMP---VRDSVTYNVMISSHANHGLVSLA 150

Query: 443 ----------DQGKW---IHAYIRKN------GL-----KINSILGTTLIDMYMKLGCVD 478
                     D   W   + AY+R        GL     + ++I    L+  Y++ G + 
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMS 210

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A E+F     + V SWN ++ G+A  G   ++  +F       V     T+  V+    
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYA 266

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
             G+++E  R F++M      E N+  +  MV    +  M+ EA+EL   MP   +VA+W
Sbjct: 267 QNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-NVASW 320

Query: 599 GALLGACKKHG 609
             +L    + G
Sbjct: 321 NTMLTGYAQAG 331


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/704 (37%), Positives = 406/704 (57%), Gaps = 35/704 (4%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  ++  Y Q  +   AI ++  M++  V    +T   +  + A   ++  G+ IH  V+
Sbjct: 110 WTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVV 169

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G  S V V  +L+NMYA CGD           PV+                    AK 
Sbjct: 170 KLGLGSCVPVATSLLNMYAKCGD-----------PVI--------------------AKV 198

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++M  +NI   N++I L+ + G    A   F++MP +D+VSW+++IS Y Q     EA
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEA 258

Query: 279 LVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           LV+F  M++   +  D   + S+LSACANL  +  G  +HA  ++   E    + NALI 
Sbjct: 259 LVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318

Query: 338 MYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           MY+  G +  A  + +     NL++I++ S++ GY K G+V+ AR +F+ + ++DVV+W+
Sbjct: 319 MYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWT 378

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI GY Q+  +++ L LF  M + G  P+  TL +++S  + L  L+ GK IHA   K 
Sbjct: 379 AMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKA 438

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFH-GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           G      +   LI MY K G ++ A  VF     +K + SW ++I+  A +GL  +++ +
Sbjct: 439 GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M   G+ P+ IT+VGVL AC H+GLV++G +++N M + H +EP   HY CM+DL G
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG+L+EA   IESMP+ PD   WG+LL +CK H + ++ +    +L+ + P + G ++ 
Sbjct: 559 RAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLA 618

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           L+N++++ G+W++  + R +M  RGV K  G S I     +H F   D  HPQ +EI  +
Sbjct: 619 LANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKL 678

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           + E+ +++K  G+ PDT  V  D+++E KE  L  HSEKLAIAFGL+       +RIMKN
Sbjct: 679 MAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKN 738

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+CNDCH+A KFIS+   REI+VRD  RFHHFK GSCSC D+W
Sbjct: 739 LRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 162/546 (29%), Positives = 257/546 (47%), Gaps = 99/546 (18%)

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           F G+ +H  ++K G    VY+ N L+  YA  G L  A  +FDE P+    SWN++++GY
Sbjct: 27  FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
               N E ++                               RL  EMP  D VSW+A+I 
Sbjct: 87  AKQGNFEVSR-------------------------------RLLYEMPDCDPVSWTAIIV 115

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y Q  +++ A+ +F  MI  RV   +  V +VLS+CA    +  G  +H+  VK+G+  
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            + +  +L++MY+ CG+   A+ +FD     ++ +WN++IS Y++ G  E A + F+ M 
Sbjct: 176 CVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGK 446
           ++D+VSW++MISGY+Q     E L +F +M +   ++PD  TL S++SAC +L  L+ GK
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 447 WIHAYI--------------------RKNGLKI-------------NSILGTTLIDMYMK 473
            IHAYI                    +  G++I             N I  T+L+D Y K
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           LG V  A E+F+   ++ V +W A+I+G+  NGL + +LE+F  M   G  PN  T   +
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLE---------------------------PNSKH- 565
           L     + +++ G +   S I+                                PN K  
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 566 ---YGCMVDLLGRAGMLKEAEELIE---SMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
              +  M+  L + G+ KEA  L E   S+ M PD  T+  +L AC   G  E G +   
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 620 KLVELQ 625
            + E+ 
Sbjct: 536 MMTEVH 541



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 45/227 (19%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF  L   +   +  M+  Y+Q  +   A+ L++LM+N     ++YT   +   S+  L
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS-SL 422

Query: 146 SVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD-ESPVLDLVSWNS- 202
           ++ E GK IH   +KAG  S   V N LI MYA  G+++ A+++FD  +   ++VSW S 
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSM 482

Query: 203 ----------------------------------ILAGYVNADNVEEAKFIYNKMPERNI 228
                                             +L+   +   VE+ +  YN M E + 
Sbjct: 483 IMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE 542

Query: 229 IASN-----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SC 268
           I         MI L+GR G + EA    + MP + D ++W +L+ SC
Sbjct: 543 IEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASC 589


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/801 (34%), Positives = 428/801 (53%), Gaps = 75/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S K+  QIL  +I  G   +    +++I        F   S + ++F  +E    
Sbjct: 54  LENCTSKKELYQILPFIIKNGFYNEHLFQTKVISL---FCKFGSNSEAARVFEHVELKLD 110

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +++ M++ Y + +    A+C +  M+ + V +    Y  L Q     L + +G+ IH  
Sbjct: 111 VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGL 170

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++  GF+S+++V   ++++YA C  +  A K+F+     DLVSW +++AGY    + + A
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             +  +M E                                         +  +N+++ +
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDM 290

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+   A  +FK M  K +VSW+ +I    QN   EEA   F+ M+D   +   V +
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTM 350

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           + VL ACANL  ++ G  VH L  K+ ++  +++ N+LI MYS                 
Sbjct: 351 MGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYS----------------- 393

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                         KC  V+ A ++F+ + EK  V+W+ MI GYAQ+    E L+LF  M
Sbjct: 394 --------------KCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMM 438

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q  GI+ D  TLV VI+A        Q KWIH    +  +  N  + T L+DMY K G +
Sbjct: 439 QSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAI 498

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A ++F   +E+ V +WNA+I G+  +G+  ++L++F+EM+K  V PN+ITF+ V+ AC
Sbjct: 499 KTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H G V+EG   F SM +++ LEP   HY  MVDLLGRAG L +A   I+ MP+ P ++ 
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISV 618

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
            GA+LGACK H + E+GE+  +KL +L PD  G+HVLL+NI+AS   WD V +VR  M  
Sbjct: 619 LGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMED 678

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           +G+ K PGCS +E    IH F +G   HP+  +I   L+ +  ++K  GY PD   +  D
Sbjct: 679 KGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HD 737

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++++ K+  L  HSE+LAIAFGL+  SP   + I KNLR+C DCH   K+IS    REI+
Sbjct: 738 VEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREII 797

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK+GSCSC D+W
Sbjct: 798 VRDLRRFHHFKNGSCSCGDYW 818


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/568 (43%), Positives = 357/568 (62%), Gaps = 6/568 (1%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++   G +  A  +F EM ++D+V+W+ +I  Y +  + +EA  LF  M D  VM DE++
Sbjct: 158 MYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMI 217

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + +++SAC     ++   +++   ++  +    +L  AL+ MY+  G +  A + F    
Sbjct: 218 LCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMS 277

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             +L    +M+SGY K G ++ AR +FD    KD+V W+TMIS YA+ D   E L +F E
Sbjct: 278 VRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEE 337

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M   GI+PD  T++SVISAC +L  LD+ KW+H Y   NGL+    +   LI+MY K G 
Sbjct: 338 MCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGG 397

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +D A +VF     + V SW+++I  FAM+G A  SL +F++MK+  V PNE+TFVGVL  
Sbjct: 398 LDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYG 457

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV+EG + F SM  E+ + P  +HYGCMVDL GRA +L+EA E+IESMPM+P+V 
Sbjct: 458 CSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVV 517

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WG+L+ AC+ HG+ E+GE   +++++L+PDHDG  VL+SNI+A + RWD V  +R +M 
Sbjct: 518 IWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIME 577

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
           ++ V K  G S I+ NG  HEFL GD+ H Q NEI   L E+  KLKL GY PD   V  
Sbjct: 578 KKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLV 637

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNP------IRIMKNLRICNDCHTAAKFISR 770
           D+++EEK+  +  HSEKLA+ FGL+             IRI+KNLR+C DCH   K +S+
Sbjct: 638 DVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSK 697

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ++ EI+VRDR RFH +K G CSC D+W
Sbjct: 698 VYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 138/623 (22%), Positives = 252/623 (40%), Gaps = 146/623 (23%)

Query: 22  PIFKPTINLSILETHLQK---CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           P  +P+  +S   T L+K   C+S     Q+ + ++ T +       +  +   +     
Sbjct: 4   PPPRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVI---NHKLNSFLFNLSFSSSS 60

Query: 79  IEMSYSFKIFAFLES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           I +SY+  +F+ +   P   +FN+++R   +   P+  I  Y+ + +     D  ++P +
Sbjct: 61  INLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPI 120

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVN---------------------------- 169
            +A +   ++FEG  +H    K    SD +V                             
Sbjct: 121 LKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDV 180

Query: 170 ---NTLINMYAVCGDLSAARKLF----------DESPVLDLVS----------------- 199
              NT+I  Y   G L  A KLF          DE  + ++VS                 
Sbjct: 181 VTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDF 240

Query: 200 ------------WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247
                         +++  Y  A  ++ A   + KM  RN+  S +M+  + + G + +A
Sbjct: 241 LIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDA 300

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             +F +   KDLV W+ +IS Y +++  +EAL +F  M    +  D V ++SV+SAC NL
Sbjct: 301 RVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNL 360

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +     VH      G+E  + + NALI+MY+ CG +  A  +F+     +++SW+SMI
Sbjct: 361 GTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMI 420

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                                          + +A H + S++LSLF +M+   + P+E 
Sbjct: 421 -------------------------------NAFAMHGEASDSLSLFAQMKQENVEPNEV 449

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T V V+  C+H   +++GK I A               ++ D Y                
Sbjct: 450 TFVGVLYGCSHSGLVEEGKKIFA---------------SMTDEY---------------N 479

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
               +  +  ++  F    L  ++LE+   M    + PN + +  ++ ACR  G ++ G 
Sbjct: 480 ITPKIEHYGCMVDLFGRANLLREALEVIESMP---MAPNVVIWGSLMSACRVHGELELGE 536

Query: 548 RHFNSMIQEHRLEPNSKHYGCMV 570
                ++   +LEP+  H G +V
Sbjct: 537 LAAKRIL---KLEPD--HDGALV 554


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/514 (44%), Positives = 343/514 (66%)

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   V  ++  + +V+ ACA++  ++ G   H   +K+G E  + +Q AL+HMY+ CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +  A  +FD        +WN+MI+G+ +   ++KA  LF  M E+DVVSW+ +I+GYAQ+
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
               E+L++F +M+  G++ D   + SV+SAC  L AL+ G+  HAY+ ++G  ++ ++G
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           + L+DMY K G +++A +VF    ++   SWN++I G A +G  + ++ +F +M ++G+ 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           PNEI+FVGVL AC H GLV+EG  +FN M Q + + P+  HY CM+DLLGRAG L EAE 
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            I  MP+ PDV+ WGALLGAC+ HG+ E+ +R+   L+ ++    G +VLLSNI+A+ G+
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WDD  +VR +M  RGV+K PG S IE   I+H F+AG+ +HPQ+ EI   L+ +++K+K 
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY P+   V  D++ +EKE +L  HSEKLAIAFG+I  +P   IR+ KNLR+C DCHT 
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTV 480

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KFIS  F R+IVVRD +RFHHFK G CSC D+W
Sbjct: 481 IKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 189/380 (49%), Gaps = 64/380 (16%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           M+   V  + +T   + +A A   S+ +GK  H++++K GF+SDV V   L++MYA CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRK 241
           L                               E+A  +++KM ER+    N+MI    + 
Sbjct: 61  L-------------------------------EDAGHVFDKMSERSTRTWNAMITGHAQN 89

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
            ++ +A +LF EM ++D+VSW+A+I+ Y QN   +E+L +F  M    +  D  ++ SVL
Sbjct: 90  RDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVL 149

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           SACA+L  ++ G   HA  V+ G    I + +AL+ MY+  G +  A ++FD     + +
Sbjct: 150 SACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEV 209

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           SWNS+I+G   C                            AQH + ++ + LF +M   G
Sbjct: 210 SWNSIITG---C----------------------------AQHGRGNDAVLLFEQMLQAG 238

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNA 480
           I+P+E + V V+SAC+H   +++G+     + +N G+  +    T +ID+  + GC+D A
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 481 LEVFHGTE-EKGVSSWNALI 499
               +G   E  VS W AL+
Sbjct: 299 ENFINGMPVEPDVSVWGALL 318



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 41/229 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  + K+F  +   +   +  ++  Y Q     +++ ++  M    +  D +    +  
Sbjct: 91  DMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLS 150

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  G+  H +V+++GF  D+ V + L++MYA  G +  A ++FD+ P  + VS
Sbjct: 151 ACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVS 210

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER-----------------------------NIIA 230
           WNSI+ G        +A  ++ +M +                              N++ 
Sbjct: 211 WNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMT 270

Query: 231 SN-----------SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            N            MI L GR G + EA      MP + D+  W AL+ 
Sbjct: 271 QNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLG 319


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/765 (37%), Positives = 436/765 (56%), Gaps = 50/765 (6%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           +  +F    Q+ +Q+I   L    +  + LI   T L       Y+  +F    +PN F+
Sbjct: 10  RVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRA--PPHYTHLLFNSTLNPNVFV 67

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           F +M+R Y       + + +Y+ M    V  D + YP+L +++        G   H HVL
Sbjct: 68  FTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVL 122

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEA 216
           K G  SD +V N +I+MYA  G +  ARK+FDE P  +  +  WN++++GY   ++  +A
Sbjct: 123 KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           +++++ MPERN+I   +M+  + +  ++  A R F  MP++ +VSW+A++S Y QN + E
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANL-TVVKAGTSVHALAVK-IGIECYINLQNA 334
           EAL LF  M++  +  DE   V+V+SAC++      A + V  L  K I + C++  + A
Sbjct: 243 EALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFV--RTA 300

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY+                               K G ++ AR LF+ M  ++VV+W
Sbjct: 301 LLDMYA-------------------------------KFGDLDSARKLFNTMPGRNVVTW 329

Query: 395 STMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           ++MI+GYAQ+ Q +  + LF EM     + PDE T+VSVISAC HL AL+ G W+  ++ 
Sbjct: 330 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLT 389

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           +N +K++      +I MY + G +++A  VF     + V S+N LI GFA +G   +++ 
Sbjct: 390 ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAIN 449

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           + S MK+ G+ P+ +TF+GVL AC H GL++EG + F S+      +P   HY CMVDLL
Sbjct: 450 LMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-----KDPAIDHYACMVDLL 504

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GR G L++A+  +E MPM P    +G+LL A + H   E+GE    KL EL+PD+ G  +
Sbjct: 505 GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFI 564

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+AS GRW DV  +R  M + GV K  G S +E  G +H+F+  DR+H + ++I  
Sbjct: 565 LLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQ 624

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           +L E+ KK++  GY  D   V  D+++EEKE  +  HSEKLAI + L+       IR++K
Sbjct: 625 LLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVK 684

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCHTA K IS+   R I+VRD +RFH F  G CSC D+W
Sbjct: 685 NLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/748 (38%), Positives = 420/748 (56%), Gaps = 37/748 (4%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  +  +F  +   NG  +  M+  Y+      +A  +++ ML    G+      L++  
Sbjct: 173 MEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCE--GMTPEQPNLVSVL 230

Query: 141 SALRLSVFEGKLIHDHVL--KAGFDSDVYVNNTLINMYAV-CGDLSAARKLFDESPVLDL 197
           SA+R     G L   HVL  K GF+ DV V   ++N Y      L +A K F+     + 
Sbjct: 231 SAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNE 290

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
            +W++I+A    A  +++A  +Y + P +++ +  SM+    R G + +A  LF ++ + 
Sbjct: 291 YTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEP 350

Query: 258 DLVSWSALISCYEQNEMYEEALVLF-----MNMIDHRVMV--------DEVVVVSVLS-- 302
           ++VSW+A+I+ Y QNEM +EA  LF      N I    M+         E  +VS+ +  
Sbjct: 351 NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALH 410

Query: 303 ----------------ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                           AC+N+  ++ G  VH+LAVK G +    + NALI +Y     I 
Sbjct: 411 RKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIG 470

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
           +  ++FD     D +S+NS +S  ++    ++AR +F+ M   DVVSW+T+IS  AQ DQ
Sbjct: 471 SVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQ 530

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E + +F  M H    P+   L  ++    +L A   G+ IH    K G+    ++   
Sbjct: 531 GNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANA 590

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ MY K    D +L+VF   EE+ + +WN +I G+A +GL  +++ M+  M  +GV PN
Sbjct: 591 LVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPN 649

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E+TFVG+L AC H GLVDEGH+ F SM  ++ L P  +HY CMVDLLGRAG ++ AE  I
Sbjct: 650 EVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFI 709

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP+ PD   W ALLGACK H + E+G R   KL  ++P + G +V+LSNI++S+G WD
Sbjct: 710 YDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWD 769

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V +VR +M  RGV K PGCS ++    +H F+ GD  H QI  I   L E+   LK  G
Sbjct: 770 EVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATG 829

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  DID+E+KE++L  HSEKLA+A+GL+      PI+IMKNLRIC DCHT  K
Sbjct: 830 YVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIK 889

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSC 794
           F+S    REI VRD +RFHHF++GSCSC
Sbjct: 890 FVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 222/478 (46%), Gaps = 70/478 (14%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           L++ YA  G +  AR++FD   V + V+WN+++  YV   ++  A+ +++ MP R++ + 
Sbjct: 101 LLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSW 160

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+M+  +     + EA  LF+ MP+++ VSW+ +IS Y   E +  A  +F  M+   + 
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS-CGEITTAEK 350
            ++  +VSVLSA  +L       S+H L  K G E  + +  A+++ Y+     + +A K
Sbjct: 221 PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVK 280

Query: 351 LFDAGHNLDLISWN-------------------------------SMISGYLKCGSVEKA 379
            F+     +  +W+                               SM++G  + G ++ A
Sbjct: 281 FFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDA 340

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI--------------RPD 425
           + LFD + E +VVSW+ MI+GY Q++   E   LF  M                   R +
Sbjct: 341 KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSE 400

Query: 426 EATLVSVIS------------------ACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           +A LVS+ +                  AC+++ AL+ GK +H+   K G + NS +   L
Sbjct: 401 QA-LVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNAL 459

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           I +Y K   + +  ++F     K   S+N+ +     N L D++ ++F+ M     +P+ 
Sbjct: 460 ITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDV 515

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++  ++ AC      +E    F SM+ E  L PN      ++ L G  G  +  +++
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSMLHEREL-PNPPILTILLGLSGNLGAPQLGQQI 572



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 197/402 (49%), Gaps = 29/402 (7%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           A ++ I   GR G + EA  +F  MP +D+++W+++I  Y  N M +            R
Sbjct: 35  AQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG----------R 84

Query: 290 VMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQ-NALIHMYSSCGEITT 347
            + D +   ++ +    L+   +AG    A  V  G+     +  NA++  Y   G+IT 
Sbjct: 85  SLADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITL 144

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A KLFDA  + D+ SWN+M++GY     +E+AR LF+ M E++ VSW+ MISGY   +Q 
Sbjct: 145 ARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQH 204

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
                +F  M   G+ P++  LVSV+SA  HL      + IH  + K G + + ++GT +
Sbjct: 205 GRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 468 IDMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           ++ Y K +  +D+A++ F G   +   +W+ +I   +  G  D +  ++       V P+
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PS 323

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             +   + G  R+ G +D+    F+   Q H  EPN   +  M+    +  M+ EAE+L 
Sbjct: 324 RTSM--LTGLARY-GRIDDAKILFD---QIH--EPNVVSWNAMITGYMQNEMVDEAEDLF 375

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
             MP   +  +W  ++    ++G  E      + LV LQ  H
Sbjct: 376 NRMPFR-NTISWAGMIAGYARNGRSE------QALVSLQALH 410


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/541 (43%), Positives = 345/541 (63%), Gaps = 6/541 (1%)

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV----KAGTSVHAL 319
           ALI  +  +   + AL L+ ++I   +      + S+L + A    V    +   +VHA 
Sbjct: 58  ALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAH 117

Query: 320 AVKIGIECYINLQNALIHMYSSC-GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           AV++G+  ++ + NALI +++   G +  A  L      +D  ++N++I+ + + G V  
Sbjct: 118 AVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVAD 177

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           AR+LFD M E++ VSWS M++GY Q     E L +F +MQ  G+RPD+  LV V++AC  
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQ 237

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+QGKW+H Y++ N +++   LGT L+DMY K G V   +EVF G ++K V +W  +
Sbjct: 238 LGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTM 297

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G AM+G    SL +FS+M+ SGV P++I F+G L AC H GLVD+G   FNSM+  + 
Sbjct: 298 IKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYG 357

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           ++P  +HYGCMVDLL R G+L EA +++E MPM PD   WGAL+  C+ H + E+ E V 
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVI 417

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           +  +EL+PD  G +VLL NI+++ GR     E+R +M  +GV K PGCS +E  G+IH+F
Sbjct: 418 KHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQF 477

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKL-EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           + GD +HP+I +I     E+  +++L EGY PD  EV  DI++EE E+ L RHSEKLAIA
Sbjct: 478 IVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIA 537

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           F LI+     PIRI+KNLR+C DCH   K IS+ + REI+VRDR RFH FK G+CSC D+
Sbjct: 538 FALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDY 597

Query: 798 W 798
           W
Sbjct: 598 W 598



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 189/415 (45%), Gaps = 72/415 (17%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK----LI 153
           + + ++RA+     PQ A+ LY  ++   +    +T P L ++ AL  +V   +     +
Sbjct: 55  LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114

Query: 154 HDHVLKAGFDSDVYVNNTLINMYA-VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H H ++ G    + VNN LI ++A + G L+ A  L   S  +D  ++N+++  +     
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAH----- 169

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                                      R G VA+A  LF EMP+++ VSWSA+++ Y Q 
Sbjct: 170 --------------------------ARAGRVADARSLFDEMPERNAVSWSAMVNGYVQA 203

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL +F  M    V  D+ V+V VL+ACA L  ++ G  VH       I   + L 
Sbjct: 204 GDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLG 263

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MY+ CGE+    ++F+   + ++++W +                           
Sbjct: 264 TALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT--------------------------- 296

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAY 451
               MI G A H + S++L+LF +M+  G++PD+   +  + ACTH   +D+G+ + ++ 
Sbjct: 297 ----MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSM 352

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           +   G+K        ++D+  + G +  A ++     EK     +ALI G  M G
Sbjct: 353 VNNYGIKPKIEHYGCMVDLLARNGLLSEARDMV----EKMPMKPDALIWGALMAG 403



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 41/222 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   ++ M+  Y+Q    ++A+ ++  M    V  D+     +  A A   +
Sbjct: 181 LFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGA 240

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H ++        V++   L++MYA CG++    ++F+     ++++W +++ G
Sbjct: 241 LEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKG 300

Query: 207 Y--------------------VNADN---------------VEEAKFIYNKMPERNIIAS 231
                                V  D+               V++ + ++N M     I  
Sbjct: 301 LAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKP 360

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                  M+ L  R G ++EA  + ++MP K D + W AL++
Sbjct: 361 KIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMA 402


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/708 (36%), Positives = 402/708 (56%), Gaps = 35/708 (4%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASAL--RLSVFEGKLIH 154
           + N MM A+ + ++   A+ ++  +L + ++  D+Y++  L  A      L+      +H
Sbjct: 129 LHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLH 188

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             VLK+G  + + V+N LI +Y  C    A              SW              
Sbjct: 189 CSVLKSGAAAVLSVSNALIALYMKCDTPEA--------------SW-------------- 220

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ + ++MP+++ +   +M+V + R+G+V  A  +F+E+  K  V W+A+IS Y Q+ M
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI----ECYIN 330
             +A  LF  M+  +V +DE    SVLSACAN      G SVH   +++      E  + 
Sbjct: 281 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 340

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NAL+ +YS  G+I  A+++FD  +  D++SWN+++SGY+  G ++KA  +F  M  K+
Sbjct: 341 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 400

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW  M+SGY       + L LF +M+   ++P + T    I+AC  L AL  G+ +HA
Sbjct: 401 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 460

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++ + G + ++  G  L+ MY K G V++A  VF         SWNA+I     +G   +
Sbjct: 461 HLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGRE 520

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+F +M   G+ P+ I+F+ +L AC H GLVDEG  +F SM ++  + P   HY  ++
Sbjct: 521 ALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLI 580

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G + EA +LI++MP  P  + W A+L  C+ +GD E G     +L  + P HDG
Sbjct: 581 DLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDG 640

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++LLSN +++ GRW D   VR +M  RGV K PGCS IE    IH FL GD  HP+  E
Sbjct: 641 TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQE 700

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           +   L+ +  +++  GY PDT  V  D++  EKE  LF HSEKLA+ FGL+ + P   + 
Sbjct: 701 VYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVT 760

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++KNLRIC DCHTA  F+S+A  REIVVRD  RFHHFK G CSC ++W
Sbjct: 761 VLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 191/426 (44%), Gaps = 68/426 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++     ++N M+  Y+Q  +   A  L++ M++  V +D +T+  +  A A    
Sbjct: 256 VFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGF 315

Query: 147 VFEGKLIHDHV--LKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              GK +H  +  L+  F  ++ + VNN L+ +Y+  G +  A+++FD   + D+VSWN+
Sbjct: 316 FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT 375

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           IL+GY+++                               G + +A  +FK MP K+ +SW
Sbjct: 376 ILSGYIDS-------------------------------GCLDKAVEVFKVMPYKNDLSW 404

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
             ++S Y    + E+AL LF  M    V   +      ++AC  L  +K G  +HA  V+
Sbjct: 405 MVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ 464

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G E   +  NAL+ MY+ CG +  A  +F    NLD +SWN+MIS   + G   +A  L
Sbjct: 465 CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALEL 524

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M+ +                               GI PD  + +++++AC H   +
Sbjct: 525 FDQMVAE-------------------------------GIDPDRISFLTILTACNHAGLV 553

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALII 500
           D+G  +  +  R  G+         LID+  + G +  A ++      E   S W A++ 
Sbjct: 554 DEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILS 613

Query: 501 GFAMNG 506
           G   NG
Sbjct: 614 GCRTNG 619



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 45/268 (16%)

Query: 52  QMILTGLIADTFAASRLIKFSTDLLPFIE---MSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           ++++   I DT     ++ ++T L  +I+   +  + ++F  +   N   +  M+  Y+ 
Sbjct: 354 KIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVH 413

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
             + + A+ L+  M   +V   +YTY     A     ++  G+ +H H+++ GF++    
Sbjct: 414 GGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSA 473

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----- 223
            N L+ MYA CG ++ AR +F   P LD VSWN++++      +  EA  ++++M     
Sbjct: 474 GNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGI 533

Query: 224 -PER-----NIIASN-----------------------------SMIVLFGRKGNVAEAC 248
            P+R      + A N                              +I L GR G + EA 
Sbjct: 534 DPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEAR 593

Query: 249 RLFKEMPKKDLVS-WSALIS-CYEQNEM 274
            L K MP +   S W A++S C    +M
Sbjct: 594 DLIKTMPFEPTPSIWEAILSGCRTNGDM 621


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 405/704 (57%), Gaps = 35/704 (4%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  ++  Y Q  +   AI ++  M++  V    +T   +  + A   ++  G+ IH  V+
Sbjct: 110 WTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVV 169

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G  S V V  +L+NMYA CGD           PV+                    AK 
Sbjct: 170 KLGLGSCVPVATSLLNMYAKCGD-----------PVI--------------------AKV 198

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++M  +NI   N++I L+ + G    A   F++MP +D+VSW+++IS Y Q     EA
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEA 258

Query: 279 LVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           L +F  M++   +  D   + S+LSACANL  +  G  +HA  ++   E    + NALI 
Sbjct: 259 LAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318

Query: 338 MYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           MY+  G +  A  + +     NL++I++ S++ GY K G+V+ AR +F+ + ++DVV+W+
Sbjct: 319 MYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWT 378

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI GY Q+  +++ L LF  M + G  P+  TL +++S  + L  L+ GK IHA   K 
Sbjct: 379 AMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKA 438

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFH-GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           G      +   LI MY K G ++ A  VF     +K + SW ++I+  A +GL  +++ +
Sbjct: 439 GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M   G+ P+ IT+VGVL AC H+GLV++G +++N M + H +EP   HY CM+DL G
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG+L+EA   IESMP+ PD   WG+LL +CK H + ++ +    +L+ + P + G ++ 
Sbjct: 559 RAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLA 618

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           L+N++++ G+W++  + R +M  RGV K  G S I     +H F   D  HPQ +EI  +
Sbjct: 619 LANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKL 678

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           + E+ +++K  G+ PDT  V  D+++E KE  L  HSEKLAIAFGL+       +RIMKN
Sbjct: 679 MAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKN 738

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+CNDCH+A KFIS+   REI+VRD  RFHHFK GSCSC D+W
Sbjct: 739 LRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/546 (29%), Positives = 258/546 (47%), Gaps = 99/546 (18%)

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           F G+ +H  ++K G    VY+ N L+  YA  G L  A  +FDE P+    SWN++++GY
Sbjct: 27  FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
               N E ++                               RL  EMP  D VSW+A+I 
Sbjct: 87  AKQGNFEVSR-------------------------------RLLYEMPDCDPVSWTAIIV 115

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y Q  +++ A+ +F  MI  RV   +  V +VLS+CA    +  G  +H+  VK+G+  
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            + +  +L++MY+ CG+   A+ +FD     ++ +WN++IS Y++ G  E A + F+ M 
Sbjct: 176 CVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGK 446
           ++D+VSW++MISGY+Q     E L++F +M +   ++PD  TL S++SAC +L  L+ GK
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 447 WIHAYI--------------------RKNGLKI-------------NSILGTTLIDMYMK 473
            IHAYI                    +  G++I             N I  T+L+D Y K
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           LG V  A E+F+   ++ V +W A+I+G+  NGL + +LE+F  M   G  PN  T   +
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLE---------------------------PNSKH- 565
           L     + +++ G +   S I+                                PN K  
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 566 ---YGCMVDLLGRAGMLKEAEELIE---SMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
              +  M+  L + G+ KEA  L E   S+ M PD  T+  +L AC   G  E G +   
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 620 KLVELQ 625
            + E+ 
Sbjct: 536 MMTEVH 541



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 45/227 (19%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF  L   +   +  M+  Y+Q  +   A+ L++LM+N     ++YT   +   S+  L
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS-SL 422

Query: 146 SVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD-ESPVLDLVSWNS- 202
           ++ E GK IH   +KAG  S   V N LI MYA  G+++ A+++FD  +   ++VSW S 
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSM 482

Query: 203 ----------------------------------ILAGYVNADNVEEAKFIYNKMPERNI 228
                                             +L+   +   VE+ +  YN M E + 
Sbjct: 483 IMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE 542

Query: 229 IASN-----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SC 268
           I         MI L+GR G + EA    + MP + D ++W +L+ SC
Sbjct: 543 IEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASC 589


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/813 (33%), Positives = 448/813 (55%), Gaps = 79/813 (9%)

Query: 32   ILETHLQKCQSFKQFTQILSQMILTGLIADTFAA---SRLIKFSTDLLPFIEM-SYSFKI 87
            +++ ++  C  ++    + S+   TG   D       SR++K   ++L   +  +Y+ K+
Sbjct: 832  MMKAYVDTCLEYEAML-LFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKL 890

Query: 88   FAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
            F + +  +  I +N  +  ++QR    +A+  +  M+N+ V  D  T+ ++    A    
Sbjct: 891  FMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNC 950

Query: 147  VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            +  GK IH  V+++G D  V V N LINMY   G +S AR +F +   +DL+SWN++++G
Sbjct: 951  LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG 1010

Query: 207  YVNADNVEEAK---FIY----NKMPERNIIAS---------------------------- 231
                  +EE     F++    + +P++  +AS                            
Sbjct: 1011 -CTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVV 1069

Query: 232  ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                   ++I ++ ++G + EA  LF      DL SW+A++  Y  +  + +AL L++ M
Sbjct: 1070 LDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILM 1129

Query: 286  IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
             +     D++ +V+   A   L  +K G  +HA+ VK G                     
Sbjct: 1130 QESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGF-------------------- 1169

Query: 346  TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                       NLDL   + ++  YLKCG +E AR +F  +   D V+W+TMISG  ++ 
Sbjct: 1170 -----------NLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENG 1218

Query: 406  QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
            Q    L  + +M+   ++PDE T  +++ AC+ L AL+QG+ IHA I K     +  + T
Sbjct: 1219 QEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMT 1278

Query: 466  TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            +L+DMY K G +++A  +F  T  + ++SWNA+I+G A +G A ++L+ F  MK  GV P
Sbjct: 1279 SLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMP 1338

Query: 526  NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
            + +TF+GVL AC H GLV E + +F SM + + +EP  +HY C+VD L RAG ++EAE++
Sbjct: 1339 DRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKV 1398

Query: 586  IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
            I SMP     + +  LL AC+   D E G+RV  KL+ L+P     +VLLSN++A+  +W
Sbjct: 1399 ISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQW 1458

Query: 646  DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            ++V   R MM +  V K PG S ++    +H F+AGDR+H + + I N ++ + K+++ E
Sbjct: 1459 ENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREE 1518

Query: 706  GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            GY PDT     D+++E+KE +L+ HSEKLAIA+GL+   P   +R++KNLR+C DCH+A 
Sbjct: 1519 GYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAI 1578

Query: 766  KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K+IS+ F REIV+RD +RFHHF++G CSC D+W
Sbjct: 1579 KYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 258/537 (48%), Gaps = 56/537 (10%)

Query: 118  LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
            L++L+  + V    +T   + +   L  S    + +H + +K G   DV+V   L+N+YA
Sbjct: 747  LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYA 806

Query: 178  VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
              G +  AR LFD   V D+V WN ++  YV+     EA  ++++         +  +  
Sbjct: 807  KFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRT 866

Query: 238  FGR----KGNVAEACRLFKEMPKK---------DLVSWSALISCYEQNEMYEEALVLFMN 284
              R    K N+ E  + FK    K         D++ W+  +S + Q     EA+  F++
Sbjct: 867  LSRVVKCKKNILE-LKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVD 925

Query: 285  MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
            MI+ RV  D +  V +L+  A L  ++ G  +H + ++ G++  +++ N LI+MY   G 
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGS 985

Query: 345  ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
            ++ A  +F   + +DLISWN+MISG                            +SG  + 
Sbjct: 986  VSRARSVFGQMNEVDLISWNTMISG--------------------------CTLSGLEEC 1019

Query: 405  DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW----IHAYIRKNGLKIN 460
                 ++ +F+ +    + PD+ T+ SV+ AC+   +L+ G +    IHA   K G+ ++
Sbjct: 1020 -----SVGMFVHLLRDSLLPDQFTVASVLRACS---SLEGGYYLATQIHACAMKAGVVLD 1071

Query: 461  SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
            S + T LID+Y K G ++ A  +F   +   ++SWNA++ G+ ++G   K+L ++  M++
Sbjct: 1072 SFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 521  SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            SG   ++IT V    A   +  + +G +  ++++ +     +      ++D+  + G ++
Sbjct: 1132 SGERSDQITLVNAAKAAGGLVGLKQG-KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190

Query: 581  EAEELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLL 635
             A  +   +P SPD   W  ++  C ++G  +H +      +L ++QPD   F  L+
Sbjct: 1191 SARRVFSEIP-SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/618 (24%), Positives = 276/618 (44%), Gaps = 59/618 (9%)

Query: 9    HLSSTIKSSV--NAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAAS 66
            HL   ++ SV    +    P   + +L       +S   +       +  GL  D F A 
Sbjct: 746  HLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYA------VKIGLQWDVFVAG 799

Query: 67   RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
             L+          E    F   A  +     ++N MM+AY+   +  +A+ L+       
Sbjct: 800  ALVNIYAKFGLIREARVLFDGMAVRDV---VLWNVMMKAYVDTCLEYEAMLLFSEFHRTG 856

Query: 127  VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA-GFD---SDVYVNNTLINMYAVCGDL 182
               D+ T   L++    + ++ E K    +  K   +D   SDV V N  ++ +   G+ 
Sbjct: 857  FRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEA 916

Query: 183  SAARKLF----DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSM 234
              A   F    +     D +++  +L      + +E  K I+  +     ++ +   N +
Sbjct: 917  WEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCL 976

Query: 235  IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
            I ++ + G+V+ A  +F +M + DL+SW+ +IS    + + E ++ +F++++   ++ D+
Sbjct: 977  INMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQ 1036

Query: 295  VVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              V SVL AC++L       T +HA A+K G+     +  ALI +YS  G++  AE LF 
Sbjct: 1037 FTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFV 1096

Query: 354  AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                 DL SWN+++ GY+  G   KA                               L L
Sbjct: 1097 NQDGFDLASWNAIMHGYIVSGDFPKA-------------------------------LRL 1125

Query: 414  FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
            ++ MQ  G R D+ TLV+   A   LV L QGK IHA + K G  ++  + + ++DMY+K
Sbjct: 1126 YILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLK 1185

Query: 474  LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
             G +++A  VF         +W  +I G   NG  + +L  + +M+ S V P+E TF  +
Sbjct: 1186 CGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATL 1245

Query: 534  LGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            + AC  +  +++G + H N +      +P       +VD+  + G +++A  L +    +
Sbjct: 1246 VKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTN-T 1302

Query: 593  PDVATWGALLGACKKHGD 610
              +A+W A++    +HG+
Sbjct: 1303 RRIASWNAMIVGLAQHGN 1320



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 105/208 (50%), Gaps = 4/208 (1%)

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +C+  L+ A+     S G+   A ++  +GH+ D    N++I+ Y KCGS+  AR LFD 
Sbjct: 658 QCFSILRQAIAASDLSLGKRAHA-RILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDT 716

Query: 386 MIE--KDVVSWSTMISGYAQH-DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
             +  +D+V+W+ ++S  A H D+  +   LF  ++   +     TL  V   C    + 
Sbjct: 717 TPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASP 776

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
              + +H Y  K GL+ +  +   L+++Y K G +  A  +F G   + V  WN ++  +
Sbjct: 777 SASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY 836

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITF 530
               L  +++ +FSE  ++G  P+++T 
Sbjct: 837 VDTCLEYEAMLLFSEFHRTGFRPDDVTL 864


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/551 (44%), Positives = 338/551 (61%), Gaps = 2/551 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
            F    + D   W+ +I     ++  + +L+L+  M+      +      +L AC+NL+ 
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +  T +HA   K G    I   N+LI+ Y+  G    A  LFD     D +SWNS+I G
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 370 YLKCGSVEKARALFDAMIEKD-VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           Y+K G ++ A  LF  M EK+  +SW+TMISGY Q     E L LF EMQ+  + PD  +
Sbjct: 186 YVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVS 245

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           L S +SAC+ L AL+QGKWIH+Y  K   +I+S+L   LIDMY K G ++ AL VF   +
Sbjct: 246 LASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMK 305

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            K V  W ALI G+A +GL  +++  F EM+  GV PN ITF  VL AC + GLV+EG  
Sbjct: 306 TKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKS 365

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            FN++ +++ L+P  +HYGCMVDLLGRAG+L EA   I+ MP+ P+   WG+LL AC+ H
Sbjct: 366 VFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIH 425

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            + E+GE++G  L+E+  +H G +V ++NIHA   +WD   E R +M  +GVVK+PGCS 
Sbjct: 426 KNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSA 485

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD-IDQEEKETTL 727
           I   G  HEFLAGDR+H +I EI      + +KL+  GY P+  ++  D +D EEKE  +
Sbjct: 486 ISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIV 545

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            +HSEKLAI +GL+   P   IRIMKNLR+C DCH     IS+ + R+IV+RDR RFHHF
Sbjct: 546 HQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHF 605

Query: 788 KHGSCSCMDFW 798
           K G CSC D+W
Sbjct: 606 KDGKCSCGDYW 616



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 214/448 (47%), Gaps = 70/448 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF-AFLESPN 95
           LQKC +  +  QI ++M+ +GL+ D +A   + KF +  L     SY+  +F    + P+
Sbjct: 18  LQKCPTEVELKQIHARMLKSGLLQDPYA---MTKFLSFCLSSSFSSYAHDVFFNGFDRPD 74

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF-EGKLIH 154
            F++N M+R     + P +++ LY  ML  +   + YT+P L +A +  LS F E   IH
Sbjct: 75  TFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACS-NLSAFQETTQIH 133

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            H+ K G+  D+Y  N+LIN YAV G+   A  LFD     D VSWNS++ GYV A  ++
Sbjct: 134 AHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMD 193

Query: 215 EAKFIYNKMPER-NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            A  ++ KMPE+ N I+  +MI  + + G   EA +LF EM                QN 
Sbjct: 194 MALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEM----------------QNS 237

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
                           V  D V + S LSAC+ L  ++ G  +H+ A K        L  
Sbjct: 238 ---------------NVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCC 282

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
            LI MY+ CGE+  A  +F                  +K  SV+   AL           
Sbjct: 283 VLIDMYAKCGEMEEALGVFKN----------------MKTKSVQVWTAL----------- 315

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
               ISGYA H    E +S F+EMQ+ G++P+  T  +V++AC++   +++GK +   I 
Sbjct: 316 ----ISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIE 371

Query: 454 KN-GLKINSILGTTLIDMYMKLGCVDNA 480
           ++  LK        ++D+  + G ++ A
Sbjct: 372 RDYNLKPTIEHYGCMVDLLGRAGLLNEA 399


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/815 (33%), Positives = 433/815 (53%), Gaps = 74/815 (9%)

Query: 23  IFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           I  P +  S+L +   K + FK   Q+   ++  GL ++TF  + L+   +     I   
Sbjct: 210 IPTPYVFSSVL-SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAE 268

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
              +IF+ +   +   +N+++    QR    +A+ L++ M  + +  D  T   L  A A
Sbjct: 269 ---QIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACA 325

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              + ++GK +H +V+K G  SD+ +  +L+++Y  C D+  A + F  +   ++V WN 
Sbjct: 326 SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNV 385

Query: 203 ILAGYVNADNVEEAKFIYNKMP-------------------------------------- 224
           +L  Y    N+ E+ +I+ +M                                       
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            + N+   + +I ++ + G +  A  + + + ++D+VSW+A+I+ Y Q++++ EAL LF 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M +  +  D +   S +SACA +  +  G  +HA       + YI              
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA-------QSYI-------------- 544

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                     +G++ DL   N+++S Y +CG  + A   F+ +  KD +SW+ +ISG+AQ
Sbjct: 545 ----------SGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQ 594

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
                E L +F +M   G+  +  T  S +SA  +   + QGK IHA + K G    +  
Sbjct: 595 SGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEA 654

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              LI +Y K G +++A   F    EK V SWNA+I G++ +G   +++ +F EMK+ G+
Sbjct: 655 SNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGL 714

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PN +TFVGVL AC H+GLV+EG  +F SM +EH L P  +HY C+VDLLGRA +L  A 
Sbjct: 715 MPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAR 774

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           E IE MP+ PD   W  LL AC  H + E+GE   R L+EL+P+    +VLLSN++A  G
Sbjct: 775 EFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSG 834

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +WD     R MM  RGV K PG S IE    IH F  GDR HP   +I   +D++ ++  
Sbjct: 835 KWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAG 894

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY  D   +  D++QE+K+ T + HSEKLA+AFGL++++   PIR++KNLR+CNDCH 
Sbjct: 895 EIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHN 954

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             KF+S+  +R IVVRD +RFHHF+ G CSC D+W
Sbjct: 955 WIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 152/608 (25%), Positives = 281/608 (46%), Gaps = 78/608 (12%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +++  +G   +    SRLI      L   E+  + K+F  + S N   +N ++   + + 
Sbjct: 34  ARIFKSGFDGEDVLGSRLIDI---YLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKK 90

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVN 169
           +  Q + L+ LM+  NV  D  T+  + +A +   + F+  + IH  ++  GF S   V 
Sbjct: 91  LASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVC 150

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N LI++Y+  G +  A+ +F+   + D VSW ++++G       +EA  ++ +M +  +I
Sbjct: 151 NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI 210

Query: 230 AS---------------------------------------NSMIVLFGRKGNVAEACRL 250
            +                                       N+++ L+ R GN+  A ++
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F +M ++D +S+++LIS   Q    + AL LF  M    +  D V V S+LSACA++   
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAG 330

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
             G  +H+  +K+G+   + ++ +L+ +Y  C +I TA + F      +++ WN      
Sbjct: 331 YKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWN------ 384

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
                                     M+  Y Q    SE+  +F++MQ  G+ P++ T  
Sbjct: 385 -------------------------VMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYP 419

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S++  CT L ALD G+ IH  + K+G + N  + + LIDMY K G +D A  +     E+
Sbjct: 420 SILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-H 549
            V SW A+I G+  + L  ++L++F EM+  G+  + I F   + AC  +  +++G + H
Sbjct: 480 DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH 539

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             S I  +  + +  +   +V L  R G  ++A    E +  + D  +W AL+    + G
Sbjct: 540 AQSYISGYSEDLSIGN--ALVSLYARCGRAQDAYLAFEKID-AKDNISWNALISGFAQSG 596

Query: 610 DHEMGERV 617
             E   +V
Sbjct: 597 HCEEALQV 604



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/516 (26%), Positives = 243/516 (47%), Gaps = 73/516 (14%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TY  L +      S+ + K +H  + K+GFD +  + + LI++Y   G++  A KLFD+ 
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS--------------- 231
           P  ++  WN +++G +      +   +++ M      P+ +  AS               
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131

Query: 232 -------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                              N +I L+ + G+V  A  +F+ +  KD VSW A+IS   QN
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
              +EA++LF  M    V+    V  SVLSAC  + + K G  +H   VK G+     + 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NAL+ +YS  G +  AE++F   H  D IS+NS+ISG  + G  ++A             
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA------------- 298

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                             L LF +MQ   ++PD  T+ S++SAC  + A  +GK +H+Y+
Sbjct: 299 ------------------LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYV 340

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G+  + I+  +L+D+Y+K   ++ A E F  TE + V  WN +++ +   G   +S 
Sbjct: 341 IKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESY 400

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F +M+  G+ PN+ T+  +L  C  +G +D G +    +I+    + N      ++D+
Sbjct: 401 WIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG-FQFNVYVCSVLIDM 459

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             + G L  A  +++ +    DV +W A++    +H
Sbjct: 460 YAKHGELDTARGILQRL-REEDVVSWTAMIAGYTQH 494



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 150/346 (43%), Gaps = 52/346 (15%)

Query: 330 NLQNALIHMYSSC---GEITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           N+Q  L  ++  C   G +  A+KL    F +G + + +  + +I  YL  G V+ A  L
Sbjct: 9   NVQTYL-WLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKL 67

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD +   +V  W+ +ISG       S+ L LF  M    + PDE+T  SV+ AC+   A 
Sbjct: 68  FDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAP 127

Query: 443 DQ-GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
            Q  + IHA I  +G   + ++   LID+Y K G VD A  VF     K   SW A+I G
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISG 187

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH------------ 549
            + NG  D+++ +F +M KS V P    F  VL AC  + L   G +             
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247

Query: 550 -----------------------FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
                                  F+ M +  R+  NS     ++  L + G    A +L 
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS-----LISGLAQRGFSDRALQLF 302

Query: 587 ESMP---MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           E M    M PD  T  +LL AC   G    G+++   ++++    D
Sbjct: 303 EKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSD 348



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 1/193 (0%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+  GIR +  T + +   C +  +L   K +HA I K+G     +LG+ LID+Y+  G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           VDNA+++F       VS WN +I G     LA + L +FS M    VTP+E TF  VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C       +     ++ I  H    +      ++DL  + G +  A+ + E + +  D  
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFL-KDSV 179

Query: 597 TWGALLGACKKHG 609
           +W A++    ++G
Sbjct: 180 SWVAMISGLSQNG 192


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/525 (45%), Positives = 347/525 (66%), Gaps = 7/525 (1%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +++ M +HRV  D      +L +  N   +  G   HA  +  G++    ++ +L++MYS
Sbjct: 49  VYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS 108

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
           SCG++ +A+++FD   + DL +WNS+++ Y K G ++ AR LFD M E++V+SWS +I+G
Sbjct: 109 SCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLING 168

Query: 401 YAQHDQFSETLSLFMEMQ-----HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           Y    ++ E L LF EMQ        +RP+E T+ +V+SAC  L AL+QGKW+HAYI K 
Sbjct: 169 YVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKY 228

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEM 514
            ++I+ +LGT LIDMY K G ++ A  VF+    +K V +++A+I   AM GL D+  ++
Sbjct: 229 HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288

Query: 515 FSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           FSEM  S  + PN +TFVG+LGAC H GL++EG  +F  MI+E  + P+ +HYGCMVDL 
Sbjct: 289 FSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLY 348

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GR+G++KEAE  I SMPM PDV  WG+LL   +  GD +  E   ++L+EL P + G +V
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN++A  GRW +V  +R  M  +G+ K+PGCS +E  G++HEF+ GD +  +   I  
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           MLDE+ ++L+  GY  DT EV  D+++++KE  L  HSEKLAIAF L+   P  P+RI+K
Sbjct: 469 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIK 528

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLRIC DCH   K IS+ F REIVVRD +RFHHF+ GSCSC DFW
Sbjct: 529 NLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 201/419 (47%), Gaps = 68/419 (16%)

Query: 97  FIFNTMMRAYIQR-NVPQQ--AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           F++N ++RA +   + PQ+   I +Y  M N+ V  D +T+P L  +    L +  G+  
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  +L  G D D +V  +L+NMY+ CGDL +A+++FD+S   DL +WNS++  Y  A  +
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM--PKKDLVSWSALISCYEQ 271
           ++A+ ++++MPERN+I+ + +I  +   G   EA  LF+EM  PK               
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP-------------- 190

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           NE +              V  +E  + +VLSAC  L  ++ G  VHA   K  +E  I L
Sbjct: 191 NEAF--------------VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVL 236

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI MY+ CG +  A+++F+A                   GS            +KDV
Sbjct: 237 GTALIDMYAKCGSLERAKRVFNA------------------LGS------------KKDV 266

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGK-WIH 449
            ++S MI   A +    E   LF EM     I P+  T V ++ AC H   +++GK +  
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFK 326

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNG 506
             I + G+  +      ++D+Y + G +  A E F  +   E  V  W +L+ G  M G
Sbjct: 327 MMIEEFGITPSIQHYGCMVDLYGRSGLIKEA-ESFIASMPMEPDVLIWGSLLSGSRMLG 384


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/563 (42%), Positives = 367/563 (65%), Gaps = 6/563 (1%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +   G +  +  LF +    DL  ++A I+    N + ++A +L++ ++   +  +E   
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+L +C+     K+G  +H   +K G+     +   L+ +Y+  G++ +A+K+FD    
Sbjct: 134 SSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             L+S  +MI+ Y K G+VE ARALFD+M E+D+VSW+ MI GYAQH   ++ L LF ++
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249

Query: 418 QHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
              G  +PDE T+V+ +SAC+ + AL+ G+WIH +++ + +++N  + T LIDMY K G 
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLG 535
           ++ A+ VF+ T  K + +WNA+I G+AM+G +  +L +F+EM+  +G+ P +ITF+G L 
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQ 369

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV+EG R F SM QE+ ++P  +HYGC+V LLGRAG LK A E I++M M  D 
Sbjct: 370 ACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADS 429

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             W ++LG+CK HGD  +G+ +   L+ L   + G +VLLSNI+AS G ++ V +VR +M
Sbjct: 430 VLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLM 489

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
             +G+VK PG S IE    +HEF AGDR H +  EI  ML ++++++K  GY P+T  V 
Sbjct: 490 KEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVL 549

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+++ EKE +L  HSE+LAIA+GLI+  P +P++I KNLR+C+DCHT  K IS+   R+
Sbjct: 550 QDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRK 609

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IV+RDR+RFHHF  GSCSC DFW
Sbjct: 610 IVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 199/444 (44%), Gaps = 71/444 (15%)

Query: 3   LATKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADT 62
           LAT L    + + ++  A+    P   L++L   + K QS  +  QI + ++   L+   
Sbjct: 7   LATSLPQ--NQLSTTATARFRLPPPEKLAVL---IDKSQSVDEVLQIHAAILRHNLLLHP 61

Query: 63  FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
                 +K         ++ +S  +F     P+ F+F   +       +  QA  LY  +
Sbjct: 62  RYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 121

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
           L++ +  + +T+  L ++ + +     GKLIH HVLK G   D YV   L+++YA  GD+
Sbjct: 122 LSSEINPNEFTFSSLLKSCSTK----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDV 177

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242
            +A+K+FD  P   LVS  +++  Y    NVE A+ +++ M ER+I++ N MI  + + G
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHG 237

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
              +A  LF+++                              + + +   DE+ VV+ LS
Sbjct: 238 FPNDALMLFQKL------------------------------LAEGKPKPDEITVVAALS 267

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           AC+ +  ++ G  +H       I   + +   LI MYS CG +  A  +F+     D+++
Sbjct: 268 ACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVA 327

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HG 421
           WN+MI+GY                           + GY+Q     + L LF EMQ   G
Sbjct: 328 WNAMIAGY--------------------------AMHGYSQ-----DALRLFNEMQGITG 356

Query: 422 IRPDEATLVSVISACTHLVALDQG 445
           ++P + T +  + AC H   +++G
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEG 380



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 124/280 (44%), Gaps = 24/280 (8%)

Query: 441 ALDQGKWIHAYIRKNGLKINS---ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           ++D+   IHA I ++ L ++    +L   L   Y   G + ++L +FH T +  +  + A
Sbjct: 41  SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
            I   ++NGL D++  ++ ++  S + PNE TF  +L +C       +  +  ++ + + 
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS-----TKSGKLIHTHVLKF 155

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            L  +      +VD+  + G +  A+++ + MP    V++  A++    K G+ E    +
Sbjct: 156 GLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSS-TAMITCYAKQGNVEAARAL 214

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG---------VVKIPGCSM 668
              + E   D   ++V++   +A  G  +D L +   ++  G         V  +  CS 
Sbjct: 215 FDSMCE--RDIVSWNVMIDG-YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271

Query: 669 I---EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           I   E    IH F+   R    +     ++D  +K   LE
Sbjct: 272 IGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLE 311


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/531 (47%), Positives = 343/531 (64%), Gaps = 7/531 (1%)

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           QN  +  AL L++ M  H V+ D      +L +   +     G  +HA  + +G+     
Sbjct: 40  QNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPF 96

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +Q +LI+MYSSCG  T A + FD     DL SWN++I    K G +  AR LFD M EK+
Sbjct: 97  VQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKN 156

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQH---HGIRPDEATLVSVISACTHLVALDQGKW 447
           V+SWS MI GY    ++   LSLF  +Q      +RP+E T+ SV+SAC  L AL  GKW
Sbjct: 157 VISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKW 216

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNG 506
           +HAYI K G+KI+ +LGT+LIDMY K G ++ A  +F     EK V +W+A+I  F+M+G
Sbjct: 217 VHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHG 276

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L+++ LE+F+ M   GV PN +TFV VL AC H GLV EG+ +F  M+ E+ + P  +HY
Sbjct: 277 LSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHY 336

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDL  RAG +++A  +++SMPM PDV  WGALL   + HGD E  E    KL+EL P
Sbjct: 337 GCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP 396

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            +   +VLLSN++A  GRW +V  +R +M  RG+ K+PGCS++E +G+I EF AGD +HP
Sbjct: 397 ANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHP 456

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           ++  +  MLDE+ K+L+  GY  +T EV  D+D+E KE  L  HSEKLAIA+  +  SP 
Sbjct: 457 ELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPG 516

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
             IRI+KNLRIC+DCH A K IS+ F+REI+VRD +RFHHFK+G CSC D+
Sbjct: 517 TTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 202/431 (46%), Gaps = 83/431 (19%)

Query: 91  LESPN--GFIFNTMMRA----YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           L  PN   F++N ++RA     +Q      A+ LY  M  + V  D +T+P L Q+    
Sbjct: 17  LSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSIN-- 74

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +   G+ +H  +L  G  +D +V  +LINMY+ CG  + AR+ FDE    DL SWN+I+
Sbjct: 75  -TPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAII 133

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
             + NA                             + G +  A +LF +MP+K+++SWS 
Sbjct: 134 --HANA-----------------------------KAGMIHIARKLFDQMPEKNVISWSC 162

Query: 265 LISCYEQNEMYEEALVLFMNMID---HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           +I  Y     Y+ AL LF ++      ++  +E  + SVLSACA L  ++ G  VHA   
Sbjct: 163 MIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYID 222

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSMISGYLKCGSVEKAR 380
           K G++  + L  +LI MY+ CG I  A+ +FD  G   D+++W++M              
Sbjct: 223 KTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAM-------------- 268

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                            I+ ++ H    E L LF  M + G+RP+  T V+V+ AC H  
Sbjct: 269 -----------------ITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGG 311

Query: 441 ALDQGKWIHAYIRK--NGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSW 495
            + +G   + Y ++  N   ++ ++     ++D+Y + G +++A  V      E  V  W
Sbjct: 312 LVSEG---NEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIW 368

Query: 496 NALIIGFAMNG 506
            AL+ G  ++G
Sbjct: 369 GALLNGARIHG 379


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/552 (45%), Positives = 345/552 (62%), Gaps = 31/552 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A ++F ++   ++ +W+ +I  Y ++E    AL L+  M    +  D      +L A A 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L  V+ G  VH++A++ G E  + +QN L+HMY++C                        
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC------------------------ 188

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                  G  E A  LF+ M E+++V+W+++I+GYA + + +E L+LF EM   G+ PD 
Sbjct: 189 -------GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDG 241

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+VS++SAC  L AL  G+  H Y+ K GL  N   G  L+D+Y K G +  A +VF  
Sbjct: 242 FTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDE 301

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            EEK V SW +LI+G A+NG   ++LE+F E+++ G+ P+EITFVGVL AC H G+VDEG
Sbjct: 302 MEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEG 361

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             +F  M +E+ + P  +HYGCMVDLLGRAG++K+A E I++MPM P+   W  LLGAC 
Sbjct: 362 FDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACT 421

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG   +GE    +L++L+P H G +VLLSN++AS+ RW DV +VR  M+R GV K PG 
Sbjct: 422 IHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGH 481

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S++E    +HEF+ GDR+HPQ  EI   L E+ K LKLEGY P    V  DI++EEKET 
Sbjct: 482 SLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETA 541

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEK+AIAF LI  +   PIR++KNLR+C DCH A K IS+ FDREIVVRDR RFHH
Sbjct: 542 LSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHH 601

Query: 787 FKHGSCSCMDFW 798
           FK G CSC D+W
Sbjct: 602 FKDGHCSCKDYW 613



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 216/468 (46%), Gaps = 64/468 (13%)

Query: 9   HLSSTIKSSVNAKP----IFKPTINLSILETHLQKCQSFK-QFTQILSQMILTGLIADTF 63
           H S TI +S   +     I K  I L      L  C S K +F QI +  I  G+     
Sbjct: 20  HFSFTISTSTCPESPKSYILKKCIAL------LLSCASSKFKFRQIHAFSIRHGVPLTNP 73

Query: 64  AASRLIKFSTDLLPFIE-MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
              + + F+  LL F   MSY+ +IF+ +++PN F +NTM+R Y +   P  A+ LY+ M
Sbjct: 74  DMGKYLIFT--LLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM 131

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
             + +  D +TYP L +A A  + V EG+ +H   ++ GF+S V+V NTL++MYA CG  
Sbjct: 132 HVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHA 191

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---------------- 226
            +A KLF+     +LV+WNS++ GY       EA  ++ +M  R                
Sbjct: 192 ESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251

Query: 227 -----------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                                  N+ A N+++ L+ + G++ +A ++F EM +K +VSW+
Sbjct: 252 AELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWT 311

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVK 322
           +LI     N   +EAL LF  +    +M  E+  V VL AC++  +V  G      +  +
Sbjct: 312 SLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEE 371

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNSM-----ISGYLKCGSV 376
            GI   I     ++ +    G +  A +   +     + + W ++     I G+L  G V
Sbjct: 372 YGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEV 431

Query: 377 EKARAL-FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            +A+ L  +     D V  S +   YA   ++S+   +   M   G++
Sbjct: 432 ARAQLLQLEPKHSGDYVLLSNL---YASEQRWSDVHKVRRTMLREGVK 476



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           C  +  A  +F  +   ++ +W+TMI GYA+ +     L L+ +M    I PD  T   +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + A   L+ + +G+ +H+   +NG +    +  TL+ MY   G  ++A ++F    E+ +
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +WN++I G+A+NG  +++L +F EM   GV P+  T V +L AC  +G +  G R    
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           M++   L+ N      ++DL  + G +++A ++ + M     V +W +L+
Sbjct: 267 MVKV-GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 314


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/723 (35%), Positives = 421/723 (58%), Gaps = 35/723 (4%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + ++F  +   +   + T++  Y Q    + AI ++  M+ + V    +T   +  
Sbjct: 56  KLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLA 115

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           + A   S   GK +H  V+K G  + V V N+L+NMYA  GDL                 
Sbjct: 116 SCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDL----------------- 158

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                         + AK ++++M  RN  + N+MI L    G V  A   F+ + ++D+
Sbjct: 159 --------------KMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDI 204

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           VSW+++I+   Q+    EAL  F +++ D  +  D   + S LSACANL  +  G  +H 
Sbjct: 205 VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHG 264

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG--HNLDLISWNSMISGYLKCGSV 376
             V+   +    + NALI MY+  G +  A ++ +     +LD+I++ ++++GY+K G +
Sbjct: 265 YIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDI 324

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
             AR +F+++ + DVV+W+ MI GY Q+   ++ + +F  M   G RP+  TL +++SA 
Sbjct: 325 TPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSAS 384

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-KGVSSW 495
           + + +L+ GK IHA   ++G  ++  +G  L  MY K G ++ A +VF+   + +   SW
Sbjct: 385 SSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSW 444

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
            ++I+  A +GL ++++E+F +M   G+ P+ IT+VGVL AC H GLV++G  +F+ M  
Sbjct: 445 TSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKN 504

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
            H+++P   HY CMVDL GRAG+L+EA + +E+MPM PDV  WG+LL +CK + + ++ +
Sbjct: 505 VHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAK 564

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
               +L+ ++P++ G +  L+N+++S G+WDD  ++R +M  RGV K  G S ++     
Sbjct: 565 VAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKT 624

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F   D  HPQ +EI  M+D++ K++K  G+APDT  V  D++ E K+  L  HSEKLA
Sbjct: 625 HVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLA 684

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFG+I+      +RIMKNLR+CNDCH A KFIS+  DREI+VRD  RFHHFK GSCSC 
Sbjct: 685 IAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCK 744

Query: 796 DFW 798
           D+W
Sbjct: 745 DYW 747



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 254/517 (49%), Gaps = 70/517 (13%)

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++K G    VY+ N L+N+YA  G    A  LF+E                         
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNE------------------------- 35

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                 MP +   + N+++  + ++G + +A ++F  +P +D VSW+ +I  Y Q   +E
Sbjct: 36  ------MPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFE 89

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           +A+ +F++M+  +V+  +  + +VL++CA       G  VH+  VK+G+   + + N+L+
Sbjct: 90  DAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLL 149

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           +MY+  G++  A+ +FD     +  SWN+MIS ++ CG V+ A A F+ + E+D+VSW++
Sbjct: 150 NMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNS 209

Query: 397 MISGYAQHDQFSETLSLFME-MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           MI+G  QH   +E L  F   ++   ++PD  +L S +SAC +L  L  GK IH YI + 
Sbjct: 210 MIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRT 269

Query: 456 GLKINSILGTTLIDM---------------------------------YMKLGCVDNALE 482
               +  +G  LI M                                 Y+KLG +  A +
Sbjct: 270 MFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQ 329

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F+  ++  V +W A+I+G+  NGL + ++E+F  M   G  PN  T   +L A   +  
Sbjct: 330 IFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTS 389

Query: 543 VDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           ++ G + H +++     L P+  +   +  +  +AG +  A ++   +  + D  +W ++
Sbjct: 390 LNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSM 447

Query: 602 LGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
           + A  +HG  E    +  +++ L  +PDH  +  +LS
Sbjct: 448 IMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/687 (39%), Positives = 387/687 (56%), Gaps = 70/687 (10%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH  +L+ G D D Y+ N ++      G+ + + ++ D++   ++  +N+++ G V  
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 211 DNVEEAKFIYNKMP---------------------------------------ERNIIAS 231
           D  +E+  IY+ M                                        E +    
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S+I L+ + G +  A ++F ++P K+  SW+A IS Y       EA+ +F  +++  + 
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D   +V VLSAC     +++G  +     + G+   + +  AL+  Y            
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYG----------- 255

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCG++E+AR++FD M+EK++VSWS+MI GYA +    E L
Sbjct: 256 --------------------KCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEAL 295

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF +M + G++PD   +V V+ +C  L AL+ G W    I  N    NS+LGT LIDMY
Sbjct: 296 DLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMY 355

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +D A EVF G  +K    WNA I G AM+G    +L +F +M+KSG+ P+  TFV
Sbjct: 356 AKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFV 415

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G+L AC H GLV+EG R+FNSM     L P  +HYGCMVDLLGRAG L EA +LI+SMPM
Sbjct: 416 GLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPM 475

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             +   WGALLG C+ H D ++ E V +KL+ L+P H G +VLLSNI+A+  +W++  ++
Sbjct: 476 EANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKI 535

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  RGV KIPG S IE +G++H+FL GD +HP   +I   L E+AK LK  GY P T
Sbjct: 536 RSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTT 595

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V FDI++EEKE  +  HSEKLA+AFGLI+ +P + I ++KNLR+C DCH A K ISR 
Sbjct: 596 DHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRI 655

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REI+VRD +RFH F  G CSC D+W
Sbjct: 656 AGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 233/515 (45%), Gaps = 93/515 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           +Q     K    I + ++  GL  DT+  +++++FS +   F   +YSF+I    + PN 
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFN---FGNTNYSFRILDQTKEPNI 73

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F+FNTM+R  +  +  Q++I +Y  M    +  D++T+P + +A A  L    G  +H  
Sbjct: 74  FLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSL 133

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+KAG ++D +V  +LIN+Y  CG +  A K+FD+ P  +  SW + ++GYV      EA
Sbjct: 134 VVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREA 193

Query: 217 KFIYNKMPE---------------------------------------RNIIASNSMIVL 237
             ++ ++ E                                       RN+  + +++  
Sbjct: 194 IDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDF 253

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +G+ GN+  A  +F  M +K++VSWS++I  Y  N + +EAL LF  M++  +  D   +
Sbjct: 254 YGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAM 313

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKLFDAG 355
           V VL +CA L  ++ G     L    G E   N  L  ALI MY+ CG +  A ++F   
Sbjct: 314 VGVLCSCARLGALELGDWASNLIN--GNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D + WN+ ISG    G V+ A                               L LF 
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDA-------------------------------LGLFG 400

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT--------L 467
           +M+  GI+PD  T V ++ ACTH   +++G       R+    +  +   T        +
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEG-------RRYFNSMECVFTLTPEIEHYGCM 453

Query: 468 IDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
           +D+  + GC+D A ++      E     W AL+ G
Sbjct: 454 VDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 137/280 (48%), Gaps = 3/280 (1%)

Query: 331 LQNALIHMYSSCGEIT-TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
           ++N LI  +S    +      L   G + D    N ++      G+   +  + D   E 
Sbjct: 12  IKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEP 71

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           ++  ++TMI G   +D F E++ ++  M+  G+ PD  T   V+ AC  ++  + G  +H
Sbjct: 72  NIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH 131

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           + + K G + ++ +  +LI++Y K G +DNA +VF    +K  +SW A I G+   G   
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCR 191

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++++MF  + + G+ P+  + V VL AC+  G +  G    +  I E+ +  N      +
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGE-WIDEYITENGMVRNVFVATAL 250

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           VD  G+ G ++ A  + + M +  ++ +W +++     +G
Sbjct: 251 VDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQGYASNG 289


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/725 (35%), Positives = 405/725 (55%), Gaps = 71/725 (9%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           Q+A+ L+ LM +  + ++ + +  L  A+A       G+ IH  V K GF+SD+ ++N  
Sbjct: 72  QEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAF 131

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD--------------------- 211
           + MY     +    + F    + +L S N++L+G+ + +                     
Sbjct: 132 VTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNM 191

Query: 212 --------------NVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKE 253
                         ++ E K I+ ++ +  I       NS++ ++ + G+   AC++F E
Sbjct: 192 YTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +P++D+VSW+ALI+ +   E Y   L +F  M+      +    +S+L +C++L+ V  G
Sbjct: 252 IPERDVVSWTALITGFVA-EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             VHA  VK  ++    +  AL+ MY        A+  F                     
Sbjct: 311 KQVHAQIVKNSLDGNDFVGTALVDMY--------AKNRF--------------------- 341

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
             +E A  +F+ +I++D+ +W+ +++GYAQ  Q  + +  F++MQ  G++P+E TL S +
Sbjct: 342 --LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 399

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           S C+ +  LD G+ +H+   K G   +  + + L+DMY K GCV++A  VF G   +   
Sbjct: 400 SGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV 459

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWN +I G++ +G   K+L+ F  M   G  P+E+TF+GVL AC HMGL++EG +HFNS+
Sbjct: 460 SWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSL 519

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            + + + P  +HY CMVD+LGRAG   E E  IE M ++ +V  W  +LGACK HG+ E 
Sbjct: 520 SKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEF 579

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GER   KL EL+P+ D  ++LLSN+ A+KG WDDV  VR +M  RGV K PGCS +E NG
Sbjct: 580 GERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 639

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +H FL+ D +HP+I EI   L ++ +KL   GY P+T  V  ++   EK+  LF HSE+
Sbjct: 640 QVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSER 699

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+AF L++ S    IRI KNLRIC DCH   K IS   ++E+VVRD + FHHFK+GSCS
Sbjct: 700 LALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCS 759

Query: 794 CMDFW 798
           C +FW
Sbjct: 760 CQNFW 764



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 231/492 (46%), Gaps = 73/492 (14%)

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+K G   D ++ ++L+N+Y  C  L  AR++ +E P+ D+  WN  L+   +   ++EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 217 ---------------KFIYNKMP------------------------ERNIIASNSMIVL 237
                          +FI+  +                         E +I+ SN+ + +
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + +  +V    + FK M  ++L S + L+S +   E  ++   + + ++      +    
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           +S+L  CA+   +  G ++H   +K GI                               N
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGI-------------------------------N 223

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D   WNS+++ Y KCGS   A  +F  + E+DVVSW+ +I+G+   + +   L +F +M
Sbjct: 224 PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA-EGYGSGLRIFNQM 282

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G  P+  T +S++ +C+ L  +D GK +HA I KN L  N  +GT L+DMY K   +
Sbjct: 283 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFL 342

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A  +F+   ++ + +W  ++ G+A +G  +K+++ F +M++ GV PNE T    L  C
Sbjct: 343 EDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 402

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +  +D G R  +SM  +     +      +VD+  + G +++AE + + + +S D  +
Sbjct: 403 SRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVS 460

Query: 598 WGALLGACKKHG 609
           W  ++    +HG
Sbjct: 461 WNTIICGYSQHG 472



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 104/516 (20%), Positives = 207/516 (40%), Gaps = 64/516 (12%)

Query: 24  FKPTIN--LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           F+P +   +SIL+T   K     +   I  Q+I +G+  D+   + L+            
Sbjct: 187 FEPNMYTFISILKTCASK-GDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS---A 242

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           +Y+ K+F  +   +   +  ++  ++        + ++  ML      + YT+  + ++ 
Sbjct: 243 NYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSC 301

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +    V  GK +H  ++K   D + +V   L++MYA    L  A  +F+     DL +W 
Sbjct: 302 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 202 SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
            I+AGY      E+A   + +M      P    +AS                        
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 421

Query: 232 ---------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                    ++++ ++ + G V +A  +F  +  +D VSW+ +I  Y Q+    +AL  F
Sbjct: 422 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 481

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSS 341
             M+D   + DEV  + VLSAC+++ +++ G    ++L+   GI   I     ++ +   
Sbjct: 482 EAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGR 541

Query: 342 CGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVE----KARALF--DAMIEKDVVSW 394
            G+    E   +      +++ W +++      G++E     A  LF  +  I+ + +  
Sbjct: 542 AGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILL 601

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S M +     D  +   +L   M   G++ +       ++   H+     G   H  IR+
Sbjct: 602 SNMFAAKGMWDDVTNVRAL---MSTRGVKKEPGCSWVEVNGQVHVFLSHDGS--HPKIRE 656

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
             LK+       L    M +G   N   V H   ++
Sbjct: 657 IHLKLQD-----LHQKLMSVGYTPNTDHVLHNVSDR 687


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/568 (42%), Positives = 356/568 (62%), Gaps = 6/568 (1%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++   G +  A  +F EM  +D+V+W+ +I  Y +  + +EA  LF  M D  VM DE++
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + +++SAC     ++   +++   ++  +    +L  AL+ MY+  G +  A + F    
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMS 274

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             +L    +M+SGY KCG ++ A+ +FD   +KD+V W+TMIS Y + D   E L +F E
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M   GI+PD  ++ SVISAC +L  LD+ KW+H+ I  NGL+    +   LI+MY K G 
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGG 394

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +D   +VF     + V SW+++I   +M+G A  +L +F+ MK+  V PNE+TFVGVL  
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYG 454

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV+EG + F SM  E+ + P  +HYGCMVDL GRA +L+EA E+IESMP++ +V 
Sbjct: 455 CSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV 514

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WG+L+ AC+ HG+ E+G+   ++++EL+PDHDG  VL+SNI+A + RW+DV  +R +M 
Sbjct: 515 IWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVME 574

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            + V K  G S I+ NG  HEFL GD+ H Q NEI   LDE+  KLKL GY PD   V  
Sbjct: 575 EKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLV 634

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNP------IRIMKNLRICNDCHTAAKFISR 770
           D+++EEK+  +  HSEKLA+ FGL+             IRI+KNLR+C DCH   K +S+
Sbjct: 635 DVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSK 694

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ++REI+VRDR RFH +K+G CSC D+W
Sbjct: 695 VYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 213/499 (42%), Gaps = 108/499 (21%)

Query: 83  YSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQA 140
           Y+  +F+ + SP    +FN  +R   + + P+  I  Y+ + +    +D +++ P+L   
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 141 SALRLSVFEGKLIH----------DHVLKAGF---------------------DSDVYVN 169
           S +  ++FEG  +H          D  ++ GF                       DV   
Sbjct: 122 SKVS-ALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTW 180

Query: 170 NTLINMYAVCGDLSAARKLF----------DESPVLDLVS-------------------- 199
           NT+I  Y   G +  A KLF          DE  + ++VS                    
Sbjct: 181 NTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240

Query: 200 ---------WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRL 250
                      +++  Y  A  ++ A+  + KM  RN+  S +M+  + + G + +A  +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F +  KKDLV W+ +IS Y +++  +EAL +F  M    +  D V + SV+SACANL ++
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
                VH+     G+E  +++ NALI+MY+ CG +     +F+     +++SW+SM    
Sbjct: 361 DKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM---- 416

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
                                      I+  + H + S+ LSLF  M+   + P+E T V
Sbjct: 417 ---------------------------INALSMHGEASDALSLFARMKQENVEPNEVTFV 449

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE 488
            V+  C+H   +++GK I A +  +   I   L     ++D++ +   +  ALEV     
Sbjct: 450 GVLYGCSHSGLVEEGKKIFASM-TDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP 508

Query: 489 -EKGVSSWNALIIGFAMNG 506
               V  W +L+    ++G
Sbjct: 509 VASNVVIWGSLMSACRIHG 527



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           T+  +  ++H G R D+ + + ++ A + + AL +G  +H    K     +  + T  +D
Sbjct: 95  TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMD 154

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY   G ++ A  VF     + V +WN +I  +   GL D++ ++F EMK S V P+E+ 
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH----YGCMVDLLGRAGMLKEAEEL 585
              ++ AC        G+  +N  I E  +E + +        +V +   AG +  A E 
Sbjct: 215 LCNIVSACGRT-----GNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269

Query: 586 IESM 589
              M
Sbjct: 270 FRKM 273


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/726 (37%), Positives = 417/726 (57%), Gaps = 41/726 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ--QAICLYKLMLNNNVGVDNYTYP-L 136
           +M  S + F  L   +   + TM+  Y  +N+ Q  +AI +   M+   +    +T   +
Sbjct: 95  DMDSSCEFFDRLPQRDSVSWTTMIVGY--KNIGQYHKAIRIMGEMMREGIEPSQFTLTNV 152

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           LA  +A R  +  GK +H  ++K G   +V V+N+L+NMYA CGD           P++ 
Sbjct: 153 LASVAATR-CLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD-----------PMM- 199

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                              AK ++++M  ++I + N+MI L  + G +  A   F++M +
Sbjct: 200 -------------------AKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +D+V+W+++IS Y Q      AL +F  M+ D  +  D   + SVLSACANL  +  G  
Sbjct: 241 RDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQ 300

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMISGYLKC 373
           +H+  V  G +    + NALI MYS CG + TA +L +     +L +  + +++ GY+K 
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G + +A+ +FD++ ++DVV+W+ MI GY QH  + E ++LF  M     RP+  TL +++
Sbjct: 361 GDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAML 420

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGV 492
           S  + L +L  GK IH    K+G   +  +   LI MY K G + +A   F     E+  
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW ++II  A +G A+++LE+F  M   G+ P+ IT+VGV  AC H GLV++G ++F+ 
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M    ++ P   HY CMVDL GRAG+L+EA+E IE MP+ PDV TWG+LL AC+ + + +
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNID 600

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           +G+    +L+ L+P++ G +  L+N++++ G+W++  ++R  M    V K  G S IE  
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H F   D  HPQ NEI   + ++  ++K  GY PDT  V  D+++E KE  L  HSE
Sbjct: 661 HKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAFGLI+      +RIMKNLR+CNDCHTA KFIS+   REI+VRD  RFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 781 SCRDYW 786



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 249/517 (48%), Gaps = 68/517 (13%)

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           F  +L+H  V+K+G    VY+ N L+N+Y+  G    ARKLFDE                
Sbjct: 31  FTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDE---------------- 74

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                          MP R   + N+++  + ++G++  +C  F  +P++D VSW+ +I 
Sbjct: 75  ---------------MPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIV 119

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y+    Y +A+ +   M+   +   +  + +VL++ A    ++ G  VH+  VK+G+  
Sbjct: 120 GYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRG 179

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            +++ N+L++MY+ CG+   A+ +FD     D+ SWN+MI+ +++ G ++ A A F+ M 
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMA 239

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGK 446
           E+D+V+W++MISGY Q       L +F +M     + PD  TL SV+SAC +L  L  G+
Sbjct: 240 ERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGE 299

Query: 447 WIHAYIRKNGLKINSIL---------------------------------GTTLIDMYMK 473
            IH++I   G  I+ I+                                  T L+D Y+K
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           LG ++ A  +F   +++ V +W A+I+G+  +GL  +++ +F  M      PN  T   +
Sbjct: 360 LGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAM 419

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L     +  +  G +   S ++   +   S     ++ +  +AG +  A    + +    
Sbjct: 420 LSVASSLASLGHGKQIHGSAVKSGEIYSVSVS-NALITMYAKAGSITSASRAFDLIRCER 478

Query: 594 DVATWGALLGACKKHGDHEMG-ERVGRKLVE-LQPDH 628
           D  +W +++ A  +HG  E   E     L+E L+PDH
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 165/353 (46%), Gaps = 42/353 (11%)

Query: 299 SVLSACANLTVVKAGTS--------VHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           ++L  C NL       S        VH   +K G+   + L N L+++YS  G    A K
Sbjct: 11  TLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARK 70

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LFD        SWN+++S Y K G ++ +   FD + ++D VSW+TMI GY    Q+ + 
Sbjct: 71  LFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKA 130

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + +  EM   GI P + TL +V+++      L+ GK +H++I K GL+ N  +  +L++M
Sbjct: 131 IRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNM 190

Query: 471 Y-------------------------------MKLGCVDNALEVFHGTEEKGVSSWNALI 499
           Y                               M++G +D A+  F    E+ + +WN++I
Sbjct: 191 YAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250

Query: 500 IGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
            G+   G   ++L+MFS+M + S ++P+  T   VL AC ++  +  G +  +S I    
Sbjct: 251 SGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQ-IHSHIVTTG 309

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGD 610
            + +      ++ +  R G ++ A  LIE        +  + ALL    K GD
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/689 (37%), Positives = 384/689 (55%), Gaps = 35/689 (5%)

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +AI ++  M+ + +    +T   +  + A   +   G+ +H  V+K G  S V V N+++
Sbjct: 145 EAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVL 204

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           NMY  CGD                                E A+ ++ +MPER++ + N+
Sbjct: 205 NMYGKCGD-------------------------------AETARAVFERMPERSVSSWNA 233

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV- 292
           M+ L    G +  A  LF+ MP + +VSW+A+I+ Y QN +  +AL  F  M+ +  M  
Sbjct: 234 MVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAP 293

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           DE  + SVLSACANL +V  G  VHA  ++  +     + NALI MY+  G +  A  + 
Sbjct: 294 DEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVM 353

Query: 353 DAG--HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                 +L++IS+ +++ GY+K G ++ AR +FD M  +DVV+W+ MI GY Q+    E 
Sbjct: 354 QQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEA 413

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + LF  M   G  P+  T+ +V+S C  L  L+ GK IH    ++  + +S +  +++ M
Sbjct: 414 MELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTM 473

Query: 471 YMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           Y + G +  A  VF      K   +W ++I+  A +GL + ++ +F EM + GV P+ IT
Sbjct: 474 YARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRIT 533

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           FVGVL AC H+G VDEG R+F  +  +H + P   HY CMVDLL RAG+  EA+E I+ M
Sbjct: 534 FVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM 593

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD   WG+LL AC+ H + ++ E    KL+ + P + G +  LSN++++ GRW+D  
Sbjct: 594 PVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAA 653

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           ++      + V K  G S       +H F A D  HPQ + +     +M   +K  G+ P
Sbjct: 654 KIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVP 713

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           D   V  D+D E KE  L RHSEKLAIAFGL++      +RIMKNLR+CNDCHTA KFIS
Sbjct: 714 DLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFIS 773

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +  DREI++RD  RFHHFK G CSC D+W
Sbjct: 774 KVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 256/528 (48%), Gaps = 71/528 (13%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD-----LSAARKLFDESPVLDLVSWNSIL 204
           G+ IH   +KAG  +  Y+ N L++ YA            AR+LFDE P           
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPA---------- 91

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                               +RN+   NS++ L+ + G +A+A  +F EMP++D VSW+ 
Sbjct: 92  -------------------AQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTV 132

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           ++    +   + EA+ +F++M+   +   +  + +VLS+CA       G  VH+  VK+G
Sbjct: 133 MVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLG 192

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +   + + N++++MY  CG+  TA  +F+      + SWN+M+S     G ++ A +LF+
Sbjct: 193 LSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFE 252

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALD 443
            M ++ +VSW+ +I+GY Q+   ++ L  F  M  +  + PDE T+ SV+SAC +L  + 
Sbjct: 253 NMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVS 312

Query: 444 QGKWIHAYIRKNGLK---------------------------------INSILGTTLIDM 470
            GK +HAYI ++ +                                  +N I  T L++ 
Sbjct: 313 IGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEG 372

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y+KLG + +A E+F     + V +W A+I+G+  NG  D+++E+F  M +SG  PN  T 
Sbjct: 373 YVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTV 432

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
             VL  C  +  ++ G +     I+  + E +S     +V +  R+G L  A  + + + 
Sbjct: 433 AAVLSVCASLACLEYGKQIHCKAIRSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVH 491

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDGFHVLLS 636
              +  TW +++ A  +HG  E    +  ++  V ++PD   F  +LS
Sbjct: 492 WRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLS 539



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 191/402 (47%), Gaps = 48/402 (11%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY-----SSCGEITTAEKLFD- 353
           +L  C       AG ++HA AVK G+     L N L+  Y        G    A +LFD 
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 354 -AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 ++ +WNS++S Y K G +  ARA+F  M E+D VSW+ M+ G  +  +F E + 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +F++M   G+ P + TL +V+S+C    A   G+ +H+++ K GL     +  ++++MY 
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNAL-------------------------------IIG 501
           K G  + A  VF    E+ VSSWNA+                               I G
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268

Query: 502 FAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           +  NGL  K+L  FS M   S + P+E T   VL AC ++G+V  G +  ++ I   R+ 
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG-KQVHAYILRSRMP 327

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGR 619
              +    ++ +  ++G ++ A  +++   M+  +V ++ ALL    K GD +      R
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH----AR 383

Query: 620 KLVELQPDHD--GFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ++ ++  + D   +  ++   +   G  D+ +E+  +M+R G
Sbjct: 384 EMFDVMSNRDVVAWTAMIVG-YEQNGHNDEAMELFRLMIRSG 424



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 137/305 (44%), Gaps = 31/305 (10%)

Query: 68  LIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           +I F+  L  ++   +M ++ ++F  + + +   +  M+  Y Q     +A+ L++LM+ 
Sbjct: 363 VISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIR 422

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           +    ++YT   +    A    +  GK IH   +++  +    V+N+++ MYA  G L  
Sbjct: 423 SGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPW 482

Query: 185 ARKLFDESPVL-DLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVL 237
           AR++FD      + V+W S++         E+A  ++ +M      P+R  I    ++  
Sbjct: 483 ARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDR--ITFVGVLSA 540

Query: 238 FGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
               G V E  R F+++  K     ++  ++ ++    +  ++ EA      M    V  
Sbjct: 541 CTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM---PVEP 597

Query: 293 DEVVVVSVLSAC-----ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
           D +   S+LSAC     A+L  + A      L++  G        +AL ++YS+CG    
Sbjct: 598 DAIAWGSLLSACRVHKNADLAELAAE---KLLSIDPGNS---GAYSALSNVYSACGRWND 651

Query: 348 AEKLF 352
           A K++
Sbjct: 652 AAKIW 656


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/686 (38%), Positives = 392/686 (57%), Gaps = 71/686 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H +V K G  +D +V   LI+ Y+VCG++ AAR++FD     D+VSW  ++A Y     
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
            E++  ++ +M                                        +R++    +
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV- 292
           ++ L+ + G +AEA + F+EMPK DL+ WS +IS Y Q++  +EAL LF  M    V+V 
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +     SVL ACA+L ++  G  +H+  +K+G++  + + NAL+ +Y+ CGEI  + KLF
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF 365

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 + ++WN++I GY++ G  EKA  LF  M+  D                      
Sbjct: 366 TGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLD---------------------- 403

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
                    I+P E T  SV+ A   LVAL+ G+ IH+   K     +S++  +LIDMY 
Sbjct: 404 ---------IQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYA 454

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D+A   F   +++   SWNALI G++++GL  ++L +F  M++S   PN++TFVG
Sbjct: 455 KCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVG 514

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC + GL+D+G  HF SM+Q++ +EP  +HY CMV LLGR+G   EA +LI  +P  
Sbjct: 515 VLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQ 574

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P V  W ALLGAC  H + ++G+   ++++E++P  D  HVLLSN++A+  RWD+V  VR
Sbjct: 575 PSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVR 634

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
             M ++ V K PG S +E  G++H F  GD +HP I  I  ML+ + KK +  GY PD  
Sbjct: 635 KNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCS 694

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            V  D++ +EKE  L+ HSE+LA+AFGLI I     IRI+KNLRIC DCH   K +S+  
Sbjct: 695 VVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIV 754

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            REIV+RD +RFHHF+ G CSC D+W
Sbjct: 755 QREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 240/521 (46%), Gaps = 73/521 (14%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +D+++Y  + Q +        GK +H H+LK G   D++  N L+N Y   G L  A KL
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 189 FDESPVLDLVSWNSILAGYVNA---------------DNVEEAKFIYNKM---------- 223
           FDE P+ + VS+ ++  G+  +               +  E  +F++  +          
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 224 --------------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                          + +     ++I  +   GNV  A ++F  +  KD+VSW+ +++CY
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            +N  +E++L+LF  M       +   + + L +C  L   K G SVH  A+K+  +  +
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL 240

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            +  AL+ +Y+  GEI  A++ F+     DLI W+ MIS                     
Sbjct: 241 YVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMIS--------------------- 279

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWI 448
                      YAQ D+  E L LF  M Q   + P+  T  SV+ AC  LV L+ G  I
Sbjct: 280 ----------RYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQI 329

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H+ + K GL  N  +   L+D+Y K G ++N++++F G+ EK   +WN +I+G+   G  
Sbjct: 330 HSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDG 389

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +K+L +FS M    + P E+T+  VL A   +  ++ G R  +S+  +     +S     
Sbjct: 390 EKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPG-RQIHSLTIKTMYNKDSVVANS 448

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           ++D+  + G + +A    + M    +V +W AL+     HG
Sbjct: 449 LIDMYAKCGRIDDARLTFDKMDKQDEV-SWNALICGYSIHG 488



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 71/337 (21%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H   LK  +D D+YV   L+ +Y   G+++ A++ F+E P  DL+ W+ +++ Y  
Sbjct: 224 GKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQ 283

Query: 210 ADNVEEAKFIYNKMPE----------------------------------------RNII 229
           +D  +EA  ++ +M +                                         N+ 
Sbjct: 284 SDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVF 343

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            SN+++ ++ + G +  + +LF    +K+ V+W+ +I  Y Q    E+AL LF NM+   
Sbjct: 344 VSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLD 403

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +   EV   SVL A A+L  ++ G  +H+L +K        + N+LI MY+ CG I  A 
Sbjct: 404 IQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDAR 463

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
             FD     D +SWN++I G                               Y+ H    E
Sbjct: 464 LTFDKMDKQDEVSWNALICG-------------------------------YSIHGLGME 492

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            L+LF  MQ    +P++ T V V+SAC++   LD+G+
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGR 529



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 203/442 (45%), Gaps = 40/442 (9%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++ A N ++  +   G + +A +LF EMP  + VS+  L   + ++  ++ A  L + + 
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                V++ V  ++L    ++ +     SVHA   K+G                      
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLG---------------------- 134

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                    H  D     ++I  Y  CG+V+ AR +FD +  KD+VSW+ M++ YA++  
Sbjct: 135 ---------HQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             ++L LF +M+  G RP+  T+ + + +C  L A   GK +H    K     +  +G  
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTP 525
           L+++Y K G +  A + F    +  +  W+ +I  +A +  + ++LE+F  M++S  V P
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N  TF  VL AC  + L++ G++  +S + +  L+ N      ++D+  + G ++ + +L
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDGFHVLL----SNIH 639
                   +VA W  ++    + GD E    +   +  +++QP    +  +L    S + 
Sbjct: 365 FTGSTEKNEVA-WNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVA 423

Query: 640 ASKGRWDDVLEVRGMMVRRGVV 661
              GR    L ++ M  +  VV
Sbjct: 424 LEPGRQIHSLTIKTMYNKDSVV 445



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 41/313 (13%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLA 138
           E++ + + F  +   +   ++ M+  Y Q +  ++A+ L+  M  ++V V +N+T+  + 
Sbjct: 255 EIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVL 314

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           QA A  + +  G  IH  VLK G DS+V+V+N L+++YA CG++  + KLF  S   + V
Sbjct: 315 QACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEV 374

Query: 199 SWNSILAGYVNADNVEEAKFIYNKM--------------------------PERNI---- 228
           +WN+I+ GYV   + E+A  +++ M                          P R I    
Sbjct: 375 AWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLT 434

Query: 229 ---------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                    + +NS+I ++ + G + +A   F +M K+D VSW+ALI  Y  + +  EAL
Sbjct: 435 IKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEAL 494

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHM 338
            LF  M       +++  V VLSAC+N  ++  G +   ++    GIE  I     ++ +
Sbjct: 495 NLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWL 554

Query: 339 YSSCGEITTAEKL 351
               G+   A KL
Sbjct: 555 LGRSGQFDEAVKL 567



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 47/274 (17%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C S        QI S ++  GL ++ F ++ L+          E+  S K+F     
Sbjct: 314 LQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC---GEIENSVKLFTGSTE 370

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +NT++  Y+Q    ++A+ L+  ML  ++     TY  + +ASA  +++  G+ I
Sbjct: 371 KNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQI 430

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H   +K  ++ D  V N+LI+MYA CG +  AR  FD+    D VSWN+++ GY      
Sbjct: 431 HSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLG 490

Query: 214 EEAKFIYNKMPERN----------IIASNS------------------------------ 233
            EA  +++ M + N          ++++ S                              
Sbjct: 491 MEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTC 550

Query: 234 MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI 266
           M+ L GR G   EA +L  E+P +  ++ W AL+
Sbjct: 551 MVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALL 584


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/816 (34%), Positives = 433/816 (53%), Gaps = 70/816 (8%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           F   +N     + L  C++  Q  Q+ +Q  + G++ +   A++LI F +    +  +  
Sbjct: 75  FLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYS---YYRALDD 131

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++ +F  +   +   ++ M+  + +          ++ ++      DNYT P + +A   
Sbjct: 132 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC-- 189

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
                         LK        +   L++MY  C ++  AR LFD+    DLV+W  +
Sbjct: 190 ------------RDLKN-------LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVM 230

Query: 204 LAGYVNADNVEEAKFIYNKMPER------------------------------------- 226
           + GY       E+  ++ KM E                                      
Sbjct: 231 IGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF 290

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
             ++I   +MI ++ + G V  A  +F  M +K+++SWSA+I+ Y  +    +AL LF  
Sbjct: 291 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRM 350

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   ++ D++ + S+L AC N   +     VHA A   G+   + + N L+H YS    
Sbjct: 351 MLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRA 410

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV--SWSTMISGYA 402
           +  A  LFD     D +SW+ M+ G+ K G        F  +I       +++    G A
Sbjct: 411 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNA 470

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
                +E+L LF +M+  G+ PD+  +V+V+ AC  L A+ + + I  YI++   +++ I
Sbjct: 471 -----NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 525

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           LGT +IDM+ K GCV++A E+F   EEK V SW+A+I  +  +G   K+L++F  M +SG
Sbjct: 526 LGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG 585

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + PN+IT V +L AC H GLV+EG R F+ M +++ +  + KHY C+VDLLGRAG L EA
Sbjct: 586 ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEA 645

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            +LIESM +  D   WGA LGAC+ H D  + E+    L+ELQP + G ++LLSNI+A+ 
Sbjct: 646 LKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANA 705

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           GRW+DV + R +M +R + KIPG + IE +   H+F  GD THP+  EI  ML  +  KL
Sbjct: 706 GRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKL 765

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           +L GY PDT  V  D+D+E K   L+ HSEKLAIAFGLI      PIRI+KNLR+C DCH
Sbjct: 766 ELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCH 825

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           T  K +S    R I+VRD +RFHHFK G+CSC D+W
Sbjct: 826 TFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/727 (37%), Positives = 402/727 (55%), Gaps = 49/727 (6%)

Query: 90  FLESPNGF----IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           F  +P G      +N M+  Y   N    AI L++ +L N    DN+T+  +  A AL +
Sbjct: 104 FFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIV 163

Query: 146 S-VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---------LSAARKLFDESPVL 195
               + + IH  V+K+G      V N L++++  C           ++AARKLFDE    
Sbjct: 164 EDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDE---- 219

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                      M ER+ ++  +MI  + R G +  A +    M 
Sbjct: 220 ---------------------------MTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +K +V+W+A+IS Y  +  + EAL +F  M    +  DE    SVLSACAN      G  
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 316 VHALAVKI----GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
           VHA  ++      ++  +++ NAL  +Y  CG++  A ++F+     DL+SWN+++SGY+
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV 372

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
             G +++A++ F+ M E+++++W+ MISG AQ+    E+L LF  M+  G  P +     
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            I AC  L AL  G+ +HA + + G   +   G  LI MY K G V+ A  +F       
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD 492

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             SWNA+I     +G   ++LE+F  M K  + P+ ITF+ VL  C H GLV+EGHR+F 
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFK 552

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           SM   + + P   HY  M+DLL RAG   EA+++IE+MP+ P    W ALL  C+ HG+ 
Sbjct: 553 SMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNM 612

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           ++G +   +L EL P HDG +VLLSN++A+ GRWDDV +VR +M  +GV K PGCS IE 
Sbjct: 613 DLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEV 672

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
              +H FL  D  HP++  + N L+E+  K++  GY PDT  V  D++ E+KE  L  HS
Sbjct: 673 ENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHS 732

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           EKLA+ FGL+ +     +R+ KNLRIC DCH A KF+S+  +REIVVRD  RFHHFK+G 
Sbjct: 733 EKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGE 792

Query: 792 CSCMDFW 798
           CSC ++W
Sbjct: 793 CSCGNYW 799



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 230/509 (45%), Gaps = 84/509 (16%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H H++ +GF    Y+ N LI++Y    DL +A  LFDE    D+V+  +++A + +
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
           A N   A+ I+   P                             +  +D V ++A+I+ Y
Sbjct: 94  AGNSNLAREIFFATP-----------------------------LGIRDTVCYNAMITGY 124

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGIECY 328
             N     A+ LF +++ +    D     SVL A A +    K    +H   VK G    
Sbjct: 125 SHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFV 184

Query: 329 INLQNALIHMYSSCG---------EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            ++ NAL+ ++  C           +  A KLFD     D +SW +MI+GY++ G ++ A
Sbjct: 185 TSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAA 244

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R   D M EK VV+W+ MISGY  H  F E L +F +M   GI+ DE T  SV+SAC + 
Sbjct: 245 RQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANA 304

Query: 440 VALDQGKWIHAYIRKN--------GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
                GK +HAYI +          L +N+ L T    +Y K G VD A +VF+    K 
Sbjct: 305 GFFLHGKQVHAYILRTEPRPSLDFSLSVNNALAT----LYWKCGKVDEARQVFNQMPVKD 360

Query: 492 VSSWNALIIGF-------------------------------AMNGLADKSLEMFSEMKK 520
           + SWNA++ G+                               A NG  ++SL++F+ MK 
Sbjct: 361 LVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G  P +  F G + AC  +  +  G R  ++ +     + +      ++ +  + G+++
Sbjct: 421 EGFEPCDYAFAGAIIACAWLAALMHG-RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVE 479

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHG 609
            A  L  +MP   D  +W A++ A  +HG
Sbjct: 480 AAHCLFLTMPYL-DSVSWNAMIAALGQHG 507



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 16/239 (6%)

Query: 25  KPTINLSI-----LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI 79
           +P+++ S+     L T   KC    +  Q+ +QM +  L++     S  +         I
Sbjct: 323 RPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR-----I 377

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           + + SF  F  +   N   +  M+    Q    ++++ L+  M +      +Y +     
Sbjct: 378 DEAKSF--FEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAII 435

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  G+ +H  +++ GFDS +   N LI MYA CG + AA  LF   P LD VS
Sbjct: 436 ACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS 495

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM 254
           WN+++A      +  +A  ++  M + +I+       +++      G V E  R FK M
Sbjct: 496 WNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSM 554


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 411/761 (54%), Gaps = 73/761 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  +  +F  +  P+  ++N M+R Y      QQ+I LY  ML   V   N+T+P L +
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLK 115

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE--SPVLDL 197
           A +   ++  G+LIH H    G   D+YV+  L++MYA CG L  A+ LF+       D+
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 198 VSWNSILAGYV-----------------------------------NADNVEEAKFIYNK 222
           V+WN+++A +                                     A+ + + K I+  
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAY 235

Query: 223 MPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                   N++   +++ ++ +   +  A ++F  + KK+ V WSA+I  Y  ++   +A
Sbjct: 236 YIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 279 LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           L L+ +M+  + +      + ++L ACA LT +K G  +H   +K G++           
Sbjct: 296 LALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD----------- 344

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
                               LD    NS+IS Y KCG ++ A    D MI KD VS+S +
Sbjct: 345 --------------------LDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAI 384

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           ISG  Q+    + L +F +MQ  GI P   T+++++ AC+HL AL  G   H Y    G 
Sbjct: 385 ISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGF 444

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
             ++ +   +IDMY K G +  + E+F   + + + SWN +IIG+ ++GL  ++L +F E
Sbjct: 445 TNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQE 504

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           ++  G+ P+++T + VL AC H GLV EG   F+SM Q   ++P   HY CMVDLL RAG
Sbjct: 505 LQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAG 564

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L EA   I+ MP  P+V  WGALL AC+ H + EMGE+V +K+  L P+  G  VL+SN
Sbjct: 565 NLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSN 624

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I++S GRWDD   +R +    G  K PGCS +E +G+IH F+ G ++HPQ   I+  L E
Sbjct: 625 IYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQE 684

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +  ++K  GY  D+  V  D+++EEKE  L  HSEK+AIAFG++  SP + I + KNLRI
Sbjct: 685 LLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRI 744

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A KFI+   +REI VRD  RFHHFK G C+C DFW
Sbjct: 745 CVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 187/384 (48%), Gaps = 36/384 (9%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +  +  A  +F ++PK  +V W+ +I  Y  +  +++++ L+++M+   V         +
Sbjct: 54  RNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFL 113

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNL 358
           L AC++L  ++ G  +H  A  +G+   + +  AL+HMY+ CG +  A+ LF+  +  + 
Sbjct: 114 LKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR 173

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D+++WN+MI+ +                            S +A H Q   T+    +MQ
Sbjct: 174 DIVAWNAMIAAF----------------------------SFHALHAQ---TIHSVAQMQ 202

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G+ P+ +TLVS++       AL QGK IHAY  +N    N +L T L+DMY K   + 
Sbjct: 203 QAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLF 262

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGAC 537
            A ++F+   +K    W+A+I G+ ++     +L ++ +M    G+ P   T   +L AC
Sbjct: 263 YARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRAC 322

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +  +  G +    MI+   ++ ++     ++ +  + G++  A   ++ M ++ D  +
Sbjct: 323 AQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVS 380

Query: 598 WGALLGACKKHGDHEMGERVGRKL 621
           + A++  C ++G  E    + R++
Sbjct: 381 YSAIISGCVQNGYAEKALLIFRQM 404



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 118/284 (41%), Gaps = 53/284 (18%)

Query: 31  SILETHLQKCQSF---KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           + L T L+ C      K+  ++   MI +G+  DT   + LI        + +       
Sbjct: 313 ATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISM------YAKCGIMDNA 366

Query: 88  FAFLE---SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
             FL+   + +   ++ ++   +Q    ++A+ +++ M ++ +     T   L  A +  
Sbjct: 367 VGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHL 426

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            ++  G   H + +  GF +D  + N +I+MY+ CG ++ +R++FD     D++SWN+++
Sbjct: 427 AALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMI 486

Query: 205 AGY--------------------VNADN---------------VEEAKFIYNKMPERNII 229
            GY                    +  D+               V E K+ ++ M +   I
Sbjct: 487 IGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNI 546

Query: 230 ASN-----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                    M+ L  R GN+ EA    + MP   ++  W AL++
Sbjct: 547 KPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLA 590


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/704 (36%), Positives = 399/704 (56%), Gaps = 35/704 (4%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASAL--RLSVFEGKLIH 154
           + N MM A+ + ++   A+ ++  +L + ++  D+Y++  L  A      L+      +H
Sbjct: 127 LHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLH 186

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             VLK+G  + + V+N LI +Y  C    A              SW              
Sbjct: 187 CSVLKSGAAAVLSVSNALIALYMKCDTPEA--------------SW-------------- 218

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ + ++MP+++ +   +M+V + R+G+V  A  +F+E+  K  V W+A+IS Y Q+ M
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI----ECYIN 330
             +A  LF  M+  +V +DE    SVLSACAN      G SVH   +++      E  + 
Sbjct: 279 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 338

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NAL+ +YS  G+I  A+++FD  +  D++SWN+++SGY+  G ++KA  +F  M  K+
Sbjct: 339 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 398

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW  M+SGY       + L LF +M+   ++P + T    I+AC  L AL  G+ +HA
Sbjct: 399 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 458

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++ + G + ++  G  L+ MY K G V++A  VF         SWNA+I     +G   +
Sbjct: 459 HLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGRE 518

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+F +M   G+ P+ I+F+ +L AC H GLVDEG  +F SM ++  + P   HY  ++
Sbjct: 519 ALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLI 578

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G + EA +LI++MP  P  + W A+L  C+ +GD E G     +L  + P HDG
Sbjct: 579 DLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDG 638

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++LLSN +++ GRW D   VR +M  RGV K PGCS IE    IH FL GD  HP+  E
Sbjct: 639 TYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQE 698

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           +   L+ +  +++  GY PDT  V  D++  EKE  LF HSEKLA+ FGL+ + P   + 
Sbjct: 699 VYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVT 758

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           ++KNLRIC DCHTA  F+S+A  REIVVRD  RFHHFK G CSC
Sbjct: 759 VLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 191/426 (44%), Gaps = 68/426 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++     ++N M+  Y+Q  +   A  L++ M++  V +D +T+  +  A A    
Sbjct: 254 VFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGF 313

Query: 147 VFEGKLIHDHV--LKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              GK +H  +  L+  F  ++ + VNN L+ +Y+  G +  A+++FD   + D+VSWN+
Sbjct: 314 FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNT 373

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           IL+GY+++                               G + +A  +FK MP K+ +SW
Sbjct: 374 ILSGYIDS-------------------------------GCLDKAVEVFKVMPYKNDLSW 402

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
             ++S Y    + E+AL LF  M    V   +      ++AC  L  +K G  +HA  V+
Sbjct: 403 MVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ 462

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G E   +  NAL+ MY+ CG +  A  +F    NLD +SWN+MIS   + G   +A  L
Sbjct: 463 CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALEL 522

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M+ +                               GI PD  + +++++AC H   +
Sbjct: 523 FDQMVAE-------------------------------GIDPDRISFLTILTACNHAGLV 551

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALII 500
           D+G  +  +  R  G+         LID+  + G +  A ++      E   S W A++ 
Sbjct: 552 DEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILS 611

Query: 501 GFAMNG 506
           G   NG
Sbjct: 612 GCRTNG 617



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 45/269 (16%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIE---MSYSFKIFAFLESPNGFIFNTMMRAYI 107
            ++++   I DT     ++ ++T L  +I+   +  + ++F  +   N   +  M+  Y+
Sbjct: 351 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYV 410

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
              + + A+ L+  M   +V   +YTY     A     ++  G+ +H H+++ GF++   
Sbjct: 411 HGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNS 470

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
             N L+ MYA CG ++ AR +F   P LD VSWN++++      +  EA  ++++M    
Sbjct: 471 AGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEG 530

Query: 224 --PER-----NIIASN-----------------------------SMIVLFGRKGNVAEA 247
             P+R      + A N                              +I L GR G + EA
Sbjct: 531 IDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEA 590

Query: 248 CRLFKEMPKKDLVS-WSALIS-CYEQNEM 274
             L K MP +   S W A++S C    +M
Sbjct: 591 RDLIKTMPFEPTPSIWEAILSGCRTNGDM 619


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/709 (37%), Positives = 402/709 (56%), Gaps = 37/709 (5%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASA--LRLSVFEGKLIH 154
           + N ++ AY + +    A+ +++ L+ + ++  D+Y++  L  A      +SV     +H
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLH 182

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             VLK+G    + V N L+ +Y  C           ESP                 +   
Sbjct: 183 CSVLKSGAGGALSVCNALVALYMKC-----------ESP-----------------EATR 214

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ + ++MP ++ +   +M+V + R+G+V  A  +F+E+  K  V W+A+IS Y  + M
Sbjct: 215 DARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGM 274

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI----ECYIN 330
             EA  LF  M+  RV +DE    SVLSACAN+ +   G SVH   +++      E  + 
Sbjct: 275 AVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALP 334

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NAL+  YS CG I  A ++FD     D++SWN+++SGY++   ++KA  +F+ M  K+
Sbjct: 335 VNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 391 VVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
            +SW  M+SGY  H  F+E  L LF +M+   ++P + T    I+AC  L AL  GK +H
Sbjct: 395 ELSWMVMVSGYV-HGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLH 453

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            +I + G + ++  G  LI MY + G V  A  +F         SWNA+I     +G   
Sbjct: 454 GHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGR 513

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++LE+F  M   G+ P+ I+F+ VL AC H GLVDEG R+F SM ++  + P   HY  +
Sbjct: 514 EALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRL 573

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           +DLLGRAG + EA +LI++MP  P  + W A+L  C+  GD E+G     +L ++ P HD
Sbjct: 574 IDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G ++LLSN +++ G W D   VR +M  RGV K PGCS IEA   +H FL GD  HP+ +
Sbjct: 634 GTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAH 693

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           E+   L+ +  K++  GY PDT  V  D++  +KE  LF HSE+LA+ FGL+ + P   +
Sbjct: 694 EVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATV 753

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ++KNLRIC+DCH A  F+S+A  REIVVRD  RFHHFK G CSC ++W
Sbjct: 754 TVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 192/426 (45%), Gaps = 68/426 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++     ++N M+  Y+   +  +A  L++ M+   V +D +T+  +  A A    
Sbjct: 250 VFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGL 309

Query: 147 VFEGKLIHDHV--LKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              GK +H  +  L+  F  ++ + VNN L+  Y+ CG+++ AR++FD   + D+VSWN+
Sbjct: 310 FAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNT 369

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           IL+GYV +  +++A  ++ +MP +N +                               SW
Sbjct: 370 ILSGYVESSCLDKAVEVFEEMPYKNEL-------------------------------SW 398

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
             ++S Y      E+AL LF  M    V   +      ++AC  L  +K G  +H   V+
Sbjct: 399 MVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQ 458

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G E   +  NALI MY+ CG +  A  +F    N+D +SWN+MIS   + G   +A  L
Sbjct: 459 LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALEL 518

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M+ +                               GI PD  + ++V++AC H   +
Sbjct: 519 FDRMVAE-------------------------------GIYPDRISFLTVLTACNHSGLV 547

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALII 500
           D+G ++  +  R  G+       T LID+  + G +  A ++      E   S W A++ 
Sbjct: 548 DEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 501 GFAMNG 506
           G   +G
Sbjct: 608 GCRTSG 613



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 127/316 (40%), Gaps = 58/316 (18%)

Query: 7   LAHLSSTIKSSVNAKPIFKPTINLSI---LETHLQKCQSFKQFTQILSQMILTGLIADTF 63
            AH  S     +  +P F P   L +   L T   KC +     +I   M L  +++   
Sbjct: 310 FAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS--- 366

Query: 64  AASRLIKFSTDLLPFIEMS---YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
                  ++T L  ++E S    + ++F  +   N   +  M+  Y+     + A+ L+ 
Sbjct: 367 -------WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            M + NV   +YTY     A     ++  GK +H H+++ GF+      N LI MYA CG
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCG 479

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-------- 226
            +  A  +F   P +D VSWN++++      +  EA  ++++M      P+R        
Sbjct: 480 AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 227 ----------------------NIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                  II        +I L GR G + EA  L K MP +   
Sbjct: 540 ACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 261 S-WSALIS-CYEQNEM 274
           S W A++S C    +M
Sbjct: 600 SIWEAILSGCRTSGDM 615


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/760 (35%), Positives = 420/760 (55%), Gaps = 74/760 (9%)

Query: 82   SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
            +Y+ K+F F +  N F +N  +  ++       AI  +K +L + +G D+ T  ++  A+
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 142  ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
                 +  G+ IH  V+K+ F   V V+N+L+NMY+  G + AA K F  SP LDL+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 202  SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
            ++++ Y   +   EA   +  +      P++  +AS                        
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 232  ------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                         ++I L+ + G + EA  L       DL SW+A++  Y ++    +AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 280  VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
              F  M +  + +DE+ + + + A   L  +K G  + A A+K+G               
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGF-------------- 1130

Query: 340  SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                             N DL   + ++  Y+KCG +  A  LF  +   D V+W+TMIS
Sbjct: 1131 -----------------NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 400  GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            GY ++      LS++  M+  G++PDE T  ++I A + L AL+QGK IHA + K    +
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL 1233

Query: 460  NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            +  +GT+L+DMY K G V +A  VF   + + V  WNA+++G A +G  D++L +F  M+
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 520  KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
             +G+ P+++TF+GVL AC H GL  E +++F++M + + + P  +HY C+VD LGRAG +
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 580  KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            +EAE +I SMP     + + ALLGAC+  GD E  +RV  KL+ L P     +VLLSNI+
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 640  ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
            A+  +WDDV + R MM  + V K PG S I+    +H F+  DR+HPQ + I   ++++ 
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLM 1473

Query: 700  KKLKLEG-YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K+++ EG Y PDT     D+++EEKE  L+ HSEKLAIAFGLI+  P   IR++KNLR+C
Sbjct: 1474 KRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 759  NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             DCH+A K IS+   REIV+RD +RFHHF++G+CSC D+W
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 234/509 (45%), Gaps = 66/509 (12%)

Query: 153  IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
            +H + +K GF+ D++V+  L+N+Y   G +  AR LFD+ P  D V WN +L  YV    
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 213  VEEAKFIYNKMPERNIIA--SNSMIVLFGRKGNV------------AEACRLFKEMPKKD 258
             +EA   ++           SN   V+ G   +V            A A ++F      +
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858

Query: 259  LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            + +W+  ++ +        A+  F  ++   +  D V +V +LSA      +  G  +HA
Sbjct: 859  IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918

Query: 319  LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            L +K      + + N+L++MYS  G +  AEK F     LDLISWN              
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN-------------- 964

Query: 379  ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                             TMIS YAQ++   E +  F ++   G++PD+ TL SV+ AC+ 
Sbjct: 965  -----------------TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS- 1006

Query: 439  LVALDQGKW------IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
                D+G++      +H Y  K G+  +S + T LID+Y K G +D A  + HG  +  +
Sbjct: 1007 --TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDL 1064

Query: 493  SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +SWNA++ G+  +  + K+LE FS M + G+  +EIT    + A   +  + +G +    
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ---- 1120

Query: 553  MIQEH--RLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             IQ +  +L  N+  +    ++D+  + G +  A EL   +   PD   W  ++    ++
Sbjct: 1121 -IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIEN 1178

Query: 609  GDHEMGERVGR--KLVELQPDHDGFHVLL 635
            GD +    V    ++  +QPD   F  L+
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLI 1207



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 191/436 (43%), Gaps = 63/436 (14%)

Query: 223  MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ--NEMYE---E 277
            +P+R +  +N++I ++ + G++  A ++F +   +DLV+W+++++ Y Q  +  YE   E
Sbjct: 643  LPDRYL--TNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLE 700

Query: 278  ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
               LF  + +    +  + +  +L  C     V+   +VH  AVKIG E  + +  AL++
Sbjct: 701  GFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVN 760

Query: 338  MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----------- 386
            +Y   G +  A  LFD     D + WN M+  Y++    ++A   F A            
Sbjct: 761  IYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSN 820

Query: 387  -------IEKDV---------------------------VSWSTMISGYAQHDQFSETLS 412
                   +  DV                            +W+  ++ +    Q    + 
Sbjct: 821  LHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAID 880

Query: 413  LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
             F  +    I  D  TLV ++SA      LD G+ IHA + K+       +  +L++MY 
Sbjct: 881  CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 473  KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
            K G V  A + F  + E  + SWN +I  +A N L  +++  F ++ + G+ P++ T   
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 533  VLGACRHMGLVDEGHRHFNSMIQEH------RLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            VL AC      DEG  +F    Q H       +  +S     ++DL  + G + EAE L+
Sbjct: 1001 VLRAC---STGDEGE-YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056

Query: 587  ESMPMSPDVATWGALL 602
                   D+A+W A++
Sbjct: 1057 HG-KYDFDLASWNAIM 1071



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 3/187 (1%)

Query: 42   SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
            + KQ  QI +  I  G   D + +S ++      +   +M  + ++F  +  P+   + T
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDM---YIKCGDMPNALELFGEISRPDEVAWTT 1170

Query: 102  MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
            M+  YI+      A+ +Y LM  + V  D YT+  L +AS+   ++ +GK IH +V+K  
Sbjct: 1171 MISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLD 1230

Query: 162  FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            +  D +V  +L++MY  CG +  A ++F +  V  +V WN++L G     +V+EA  ++ 
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFR 1290

Query: 222  KMPERNI 228
             M    I
Sbjct: 1291 TMQSNGI 1297



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 26/227 (11%)

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +K G   HA  V  G      L N LI MYS CG + +A ++FD   + DL++WNS+++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y +                    S+  ++ G+           LF  ++  G      TL
Sbjct: 687 YAQFAD----------------SSYENVLEGF----------RLFGLLREFGFSITRLTL 720

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
             ++  C     +   + +H Y  K G +++  +   L+++Y K G V  A  +F    E
Sbjct: 721 APLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPE 780

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +    WN ++  +  N   D++L  FS   +SG  P+      V+G 
Sbjct: 781 RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGG 827


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/760 (35%), Positives = 420/760 (55%), Gaps = 74/760 (9%)

Query: 82   SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
            +Y+ K+F F +  N F +N  +  ++       AI  +K +L + +G D+ T  ++  A+
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 142  ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
                 +  G+ IH  V+K+ F   V V+N+L+NMY+  G + AA K F  SP LDL+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 202  SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
            ++++ Y   +   EA   +  +      P++  +AS                        
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 232  ------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                         ++I L+ + G + EA  L       DL SW+A++  Y ++    +AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 280  VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
              F  M +  + +DE+ + + + A   L  +K G  + A A+K+G               
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGF-------------- 1130

Query: 340  SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                             N DL   + ++  Y+KCG +  A  LF  +   D V+W+TMIS
Sbjct: 1131 -----------------NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 400  GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            GY ++      LS++  M+  G++PDE T  ++I A + L AL+QGK IHA + K    +
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL 1233

Query: 460  NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            +  +GT+L+DMY K G V +A  VF   + + V  WNA+++G A +G  D++L +F  M+
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 520  KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
             +G+ P+++TF+GVL AC H GL  E +++F++M + + + P  +HY C+VD LGRAG +
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 580  KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            +EAE +I SMP     + + ALLGAC+  GD E  +RV  KL+ L P     +VLLSNI+
Sbjct: 1354 QEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 640  ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
            A+  +WDDV + R MM  + V K PG S I+    +H F+  DR+HPQ + I   ++++ 
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLM 1473

Query: 700  KKLKLEG-YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K+++ EG Y PDT     D+++EEKE  L+ HSEKLAIAFGLI+  P   IR++KNLR+C
Sbjct: 1474 KRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533

Query: 759  NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             DCH+A K IS+   REIV+RD +RFHHF++G+CSC D+W
Sbjct: 1534 GDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 234/509 (45%), Gaps = 66/509 (12%)

Query: 153  IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
            +H + +K GF+ D++V+  L+N+Y   G +  AR LFD+ P  D V WN +L  YV    
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 213  VEEAKFIYNKMPERNIIA--SNSMIVLFGRKGNV------------AEACRLFKEMPKKD 258
             +EA   ++           SN   V+ G   +V            A A ++F      +
Sbjct: 799  QDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858

Query: 259  LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            + +W+  ++ +        A+  F  ++   +  D V +V +LSA      +  G  +HA
Sbjct: 859  IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918

Query: 319  LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            L +K      + + N+L++MYS  G +  AEK F     LDLISWN              
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN-------------- 964

Query: 379  ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                             TMIS YAQ++   E +  F ++   G++PD+ TL SV+ AC+ 
Sbjct: 965  -----------------TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS- 1006

Query: 439  LVALDQGKW------IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
                D+G++      +H Y  K G+  +S + T LID+Y K G +D A  + HG  +  +
Sbjct: 1007 --TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDL 1064

Query: 493  SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +SWNA++ G+  +  + K+LE FS M + G+  +EIT    + A   +  + +G +    
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ---- 1120

Query: 553  MIQEH--RLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             IQ +  +L  N+  +    ++D+  + G +  A EL   +   PD   W  ++    ++
Sbjct: 1121 -IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIEN 1178

Query: 609  GDHEMGERVGR--KLVELQPDHDGFHVLL 635
            GD +    V    ++  +QPD   F  L+
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLI 1207



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 3/187 (1%)

Query: 42   SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
            + KQ  QI +  I  G   D + +S ++      +   +M  + ++F  +  P+   + T
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDM---YIKCGDMPNALELFGEISRPDEVAWTT 1170

Query: 102  MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
            M+  YI+      A+ +Y LM  + V  D YT+  L +AS+   ++ +GK IH +V+K  
Sbjct: 1171 MISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLD 1230

Query: 162  FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            +  D +V  +L++MY  CG +  A ++F +  V  +V WN++L G     +V+EA  ++ 
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFR 1290

Query: 222  KMPERNI 228
             M    I
Sbjct: 1291 TMQSNGI 1297



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 5/178 (2%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ-----HDQFSETLSLFMEMQ 418
           N++I+ Y KCGS+  AR +FD   ++D+V+W+++++ YAQ     ++   E   LF  ++
Sbjct: 650 NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLR 709

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G      TL  ++  C     +   + +H Y  K G +++  +   L+++Y K G V 
Sbjct: 710 EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVG 769

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
            A  +F    E+    WN ++  +  N   D++L  FS   +SG  P+      V+G 
Sbjct: 770 QARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGG 827



 Score = 45.8 bits (107), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%)

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           +  L  GK  HA I  +G   +  L   LI MY K G + +A +VF  + ++ + +WN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 499 IIGFAMNGLADKSLE-------MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           +  +A    AD S E       +F  +++ G +   +T   +L  C   G V        
Sbjct: 684 LAAYAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
             ++    E +    G +V++  + G++ +A  L + MP   D   W  +L A
Sbjct: 742 YAVKIG-FELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/805 (33%), Positives = 426/805 (52%), Gaps = 76/805 (9%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T L    +  Q  QI +Q+IL G+  D    S + K +        +++  ++F  +  P
Sbjct: 19  TLLNNATTLSQLLQIQAQLILHGIHYDL---SSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           + F+FN ++R +    +P+ +I LY  L    N+  DN+TY     A++       G L+
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H H +  G  S+++V + ++++Y        ARK+FD  P  D V WN++++G+      
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 214 EEAKFIYNKMPE---------------------------------------RNIIASNSM 234
           E++  ++  M +                                        ++     +
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I L+ + G   +   LF ++ + DL+S++A+IS Y  N   E A+ LF  ++     V+ 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             +V ++        ++    +  L++KIGI    ++  AL  +Y    E          
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE---------- 365

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                                V+ AR LFD   EK + SW+ MISGY Q+      +SLF
Sbjct: 366 ---------------------VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            EM    + P+  T+ S++SAC  L AL  GKW+H  I+   L+ N  + T L+DMY K 
Sbjct: 405 QEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A ++F    +K V +WNA+I G+ ++G   ++L++F EM +SG+ P  +TF+ +L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLV EG+  F+SM   +  +P S+HY CMVD+LGRAG L  A E IE MP+ P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            A WGALLGAC  H + EM     ++L +L P++ G++VLLSNI+++   +     VR +
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           + +R + K PGC++IE +   + F +GDR+HPQ   I  ML+++  K++  GY  +T+  
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 715 AF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           A  D++ EEKE  +  HSEKLAIAFGLI+  P   IRI+KNLR+C DCHTA KFIS+  +
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           R IVVRD +RFHHFK+G CSC D+W
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/614 (42%), Positives = 363/614 (59%), Gaps = 36/614 (5%)

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER-NIIASNSMIVLFGRKGNVA 245
           K+ + + V+   SW      Y N  N+     ++NK  ++ N+ + NS+I    R G+  
Sbjct: 2   KISNSTSVVITFSWKIYRRRYSNNPNLTT---LFNKYVDKTNVFSWNSVIAELARSGDSV 58

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           EA R F  M K  L    +   C                                + +C+
Sbjct: 59  EALRAFSSMRKLSLKPNRSTFPC-------------------------------AIKSCS 87

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L  + +G   H  A+  G E  + + +AL+ MYS CGE+  A  LFD   + +++SW S
Sbjct: 88  ALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTS 147

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRP 424
           MI+GY++     +A  +FD M E+DV+SW+++I+ YAQ+   +E++ +F  M   G I  
Sbjct: 148 MITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 207

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +  TL +V+ AC H  +   GK IH  + K GL+ N  +GT++IDMY K G V+ A + F
Sbjct: 208 NAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF 267

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               EK V SW+A++ G+ M+G A ++LE+F EM  +GV PN ITFV VL AC H GL++
Sbjct: 268 DRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 327

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG   F +M  E  +EP  +HYGCMVDLLGRAG LKEA +LI+ M + PD   WGALLGA
Sbjct: 328 EGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 387

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ H + ++GE   RKL EL P + G++VLLSNI+A  GRW+DV  +R +M   G+VK P
Sbjct: 388 CRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPP 447

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S+++  G +H FL GDR HPQ  +I   L++++ KL+  GY PD   V  D+  EEKE
Sbjct: 448 GFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKE 507

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEKLA+AFG++   P   I I+KNLR+C DCHTA KFIS+  DREIVVRD  RF
Sbjct: 508 MVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRF 567

Query: 785 HHFKHGSCSCMDFW 798
           HHF+ G CSC D+W
Sbjct: 568 HHFRDGLCSCGDYW 581



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 220/499 (44%), Gaps = 102/499 (20%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  N F +N+++    +     +A+  +  M   ++  +  T+P   ++ +  L +  
Sbjct: 35  YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 94

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+  H   L  GF+ D++V++ L++MY+ CG+L  AR LFDE                  
Sbjct: 95  GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE------------------ 136

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                        +  RNI++  SMI  + +  +   A R+F  M ++D++SW+++I+ Y
Sbjct: 137 -------------ISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVY 183

Query: 270 EQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN M  E++ +F  M+ D  +  + V + +VL ACA+    + G  +H   +K+G+E  
Sbjct: 184 AQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESN 243

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + +  ++I MY  CG++  A K FD     ++ SW++M+                     
Sbjct: 244 VFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMV--------------------- 282

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KW 447
                     +GY  H    E L +F EM   G++P+  T VSV++AC+H   L++G  W
Sbjct: 283 ----------AGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHW 332

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
             A                          + +  +V     E GV  +  ++      G 
Sbjct: 333 FKA--------------------------MSHEFDV-----EPGVEHYGCMVDLLGRAGY 361

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHY 566
             ++ ++   MK   + P+ + +  +LGACR    VD G      + +   L+P N  +Y
Sbjct: 362 LKEAFDLIKGMK---LRPDFVVWGALLGACRMHKNVDLGEISARKLFE---LDPKNCGYY 415

Query: 567 GCMVDLLGRAGMLKEAEEL 585
             + ++   AG  ++ E +
Sbjct: 416 VLLSNIYADAGRWEDVERM 434



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 13/231 (5%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASA 142
           + ++F  +   +   +N+++  Y Q  +  +++ ++  M+ +  +  +  T   +  A A
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              S   GK IHD V+K G +S+V+V  ++I+MY  CG +  ARK FD     ++ SW++
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280

Query: 203 ILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           ++AGY    + +EA  ++ +M     + N I   S++      G + E    FK M  + 
Sbjct: 281 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEF 340

Query: 259 LVS-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            V      +  ++    +    +EA  L   M   ++  D VV  ++L AC
Sbjct: 341 DVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM---KLRPDFVVWGALLGAC 388


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/550 (41%), Positives = 357/550 (64%), Gaps = 1/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F ++   +L  ++ LI C+       +A   +  M+  R+  D +    ++ A   +  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           V  G   H+  V+ G +  + ++N+L+HMY++CG I  A ++F      D++SW SM++G
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAG 194

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y KCG VE AR +FD M  +++ +WS MI+GYA+++ F + + LF  M+  G+  +E  +
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VSVIS+C HL AL+ G+  H Y+ K+ + +N ILGT L+DMY + G ++ A+ VF    +
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPD 314

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K   SW+++I G A++G A K++  FS+M + G +P +IT   VL AC H GLVD+G   
Sbjct: 315 KDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEI 374

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + +M +++ +EP  +HYGC+VD+LGRAG L EAE  I  MP+ P+    GALLGACK + 
Sbjct: 375 YENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYK 434

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+ ERVG  L+E++P+H G++VLLSNI+A  G+W+ +  +R +M  + V K PG S+I
Sbjct: 435 NTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLI 494

Query: 670 EANGIIHEFLAG-DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           E +G I++F  G D+ HP++ +I  + +E+  K++L GY  +T +  FD+D+EEKET + 
Sbjct: 495 EIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIH 554

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLAIA+G++       IRI+KNLR+C DCHTA K IS  + RE +VRDR+RFHHF+
Sbjct: 555 MHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFR 614

Query: 789 HGSCSCMDFW 798
           +G CSC D+W
Sbjct: 615 NGLCSCRDYW 624



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/561 (28%), Positives = 264/561 (47%), Gaps = 107/561 (19%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF------STDLLPFIEMSYSFKIFAF 90
           LQ C SF     I   ++ T LI+D F ASRL+        ST   P   + Y++ IF+ 
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           +++PN F+FN ++R +     P +A   Y  ML + +  DN T+P L +AS     V  G
Sbjct: 79  IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVG 138

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           +  H  +++ GF +DVYV N+L++MYA CG ++AA ++F + P  D+VSW S++AGY   
Sbjct: 139 EQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKC 198

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             VE+A+ ++++MP RN                               L +WS +I+ Y 
Sbjct: 199 GMVEDAREMFDEMPHRN-------------------------------LFTWSIMINGYA 227

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           +N  +E+A+ LF  M    V+ +E V+VSV+S+CA+L  ++ G   H   VK  +   + 
Sbjct: 228 KNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLI 287

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  AL+ MY  CGEI  A ++F+   + D +SW+S+                        
Sbjct: 288 LGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSI------------------------ 323

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                  I G A H    + +  F +M   G  P + TL +V+SAC+H   +D+G  I+ 
Sbjct: 324 -------IKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYE 376

Query: 451 YIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            ++++ G++         ++ Y   GC+ + L                        G A 
Sbjct: 377 NMKRDYGIE-------PRLEHY---GCIVDML------------------------GRAG 402

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGC 568
           K  E  + + K  V PN      +LGAC+     +   R  N +I+   ++P +S +Y  
Sbjct: 403 KLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIE---VKPEHSGYYVL 459

Query: 569 MVDLLGRAGMLKEAEELIESM 589
           + ++   AG  ++ E L + M
Sbjct: 460 LSNIYACAGQWEKLESLRDIM 480


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/643 (37%), Positives = 373/643 (58%), Gaps = 39/643 (6%)

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           H      + D    N ++  Y   G +  AR LF+     D++SWN++++GYV    + E
Sbjct: 27  HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 86

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A+ ++++MP R++++ N M+  + R+G++ EA RLF   P +D+ +W+A++S Y QN M 
Sbjct: 87  ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 146

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEA  +F  M +   +                                         NA+
Sbjct: 147 EEARRVFDAMPERNAVS---------------------------------------WNAM 167

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           +  Y     +  A++LF+     ++ SWN+M++GY + G +E+A+A+FD M +KD VSW+
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWA 227

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            M++ Y+Q     ETL LF+EM   G   + +    V+S C  + AL+ G  +H  + + 
Sbjct: 228 AMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA 287

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G  +   +G  L+ MY K G +++A   F   EE+ V SWN +I G+A +G   ++LE+F
Sbjct: 288 GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF 347

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             M+ +   P++IT VGVL AC H GLV++G  +F SM  +  +    +HY CM+DLLGR
Sbjct: 348 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 407

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG L EA +L++ MP  PD   WGALLGA + H + E+G     K+ EL+P++ G +VLL
Sbjct: 408 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 467

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI+AS G+W D  ++R MM  RGV K+PG S IE    +H F AGD  HP+  +I   L
Sbjct: 468 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFL 527

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +++  ++K  GY   T  V  D+++EEKE  L  HSEKLA+A+G++ I P  PIR++KNL
Sbjct: 528 EDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNL 587

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCH A K+IS    R I++RD +RFHHF+ GSCSC D+W
Sbjct: 588 RVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 41/222 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   +  M+ AY Q    ++ + L+  M      V+   +  +    A   +
Sbjct: 214 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 273

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G  +H  +++AG+    +V N L+ MY  CG++  AR  F+E    D+VSWN+++AG
Sbjct: 274 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 333

Query: 207 YVNADNVEEAKFIYNKM------PER----NIIASNS----------------------- 233
           Y      +EA  I++ M      P+      ++A+ S                       
Sbjct: 334 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 393

Query: 234 -------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                  MI L GR G +AEA  L K+MP + D   W AL+ 
Sbjct: 394 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLG 435


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/553 (44%), Positives = 348/553 (62%), Gaps = 4/553 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F+++   +   W+ALI  Y     + E+++L+ +M    +        ++L AC+    
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 310 VKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           V  G  VH   + IG     + + N LI MY  CG +    ++FD   + D+ISW S+I 
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y K G++E A  LFD +  KD+V+W+ M++GYAQ+ +  E L +F  MQ  G++ DE T
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGL--KINSILGTTLIDMYMKLGCVDNALEVFHG 486
           LV VISAC  L A     W+     ++G     N ++G+ LIDMY K G V++A +VF  
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            EE+ V S++++I+GFAM+GLA  ++E+F EM K+ + PN +TF+GVL AC H G+V++G
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG 394

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            + F  M + H + P+  HY CMVDLLGRAG L+EA  L++ MPM+P    WGALLGAC+
Sbjct: 395 QQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACR 454

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG+ +M +     L EL+P+  G ++LLSNI+AS GRWDDV +VR +M  +G+ K PGC
Sbjct: 455 IHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGC 514

Query: 667 SMIEA-NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           S +E   GIIHEF AGD +HP+  EI   L+++  +LK  GY P+   VA+DI  EEK+ 
Sbjct: 515 SWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKR 574

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLA+AFGL+T +    IRI+KNLRIC DCH+     S+   REIVVRD  RFH
Sbjct: 575 LLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFH 634

Query: 786 HFKHGSCSCMDFW 798
           HF+ G CSC +FW
Sbjct: 635 HFRDGRCSCGNFW 647



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 228/490 (46%), Gaps = 80/490 (16%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           S L + L  C    Q  Q+ + +   GL    F  ++L++  T L   ++  Y   +F  
Sbjct: 40  SRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMD-PYPRLVFQQ 98

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           +E PN F++  ++R Y  +    +++ LY  M    +G  ++T+  L +A +  L V  G
Sbjct: 99  VEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLG 158

Query: 151 KLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           + +H   +L  GF SD+YV NTLI+MY  CG L    ++FDE                  
Sbjct: 159 RQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDE------------------ 200

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                        M +R++I+  S+IV + + GN+  A  LF  +P KD+V+W+A+++ Y
Sbjct: 201 -------------MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGY 247

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            QN    EAL +F  M    V  DEV +V V+SACA L   K    V  +A + G     
Sbjct: 248 AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTS 307

Query: 330 N--LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
           N  + +ALI MY+ CG +  A K+F+     ++ S++SMI G+   G    A  LFD M+
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML 367

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
           + +                               I+P+  T + V++AC+H   ++QG+ 
Sbjct: 368 KTE-------------------------------IKPNRVTFIGVLTACSHAGMVEQGQQ 396

Query: 448 IHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVF-------HGTEEKGVSSWNALI 499
           + A + + +G+  +      ++D+  + G ++ AL +        HG    GV  W AL+
Sbjct: 397 LFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHG----GV--WGALL 450

Query: 500 IGFAMNGLAD 509
               ++G  D
Sbjct: 451 GACRIHGNPD 460



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 81/351 (23%)

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R +F  +   +   W+ +I GYA    F E++ L+  M+  GI P   T  +++ AC+  
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 440 VALDQGKWIHAY-IRKNGLKINSILGTTLIDMYMKLGCV--------------------- 477
           + ++ G+ +H   I   G   +  +G TLIDMY+K GC+                     
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 478 ----------DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
                     + A E+F G   K + +W A++ G+A N    ++LE+F  M+ +GV  +E
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 528 ITFVGVLGACRHMGL-------------------------------------VDEGHRHF 550
           +T VGV+ AC  +G                                      V++ ++ F
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PMSPDVATWGALLGACKK 607
             M      E N   Y  M+      G+   A EL + M    + P+  T+  +L AC  
Sbjct: 333 ERM-----EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSH 387

Query: 608 HGDHEMGERVGRKLVE---LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
            G  E G+++   + E   + P  D +  ++ ++    GR ++ L +  MM
Sbjct: 388 AGMVEQGQQLFAMMEECHGVAPSEDHYACMV-DLLGRAGRLEEALNLVKMM 437



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 6/189 (3%)

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE--V 483
           E+ LVSV+  CTH   ++Q K +HA+I + GL+    +   L+    KL    +     V
Sbjct: 39  ESRLVSVLHGCTH---INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLV 95

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F   E      W ALI G+A+ G   +S+ +++ M++ G+ P   TF  +L AC     V
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           + G +     I       +      ++D+  + G L     + + M +  DV +W +L+ 
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIV 214

Query: 604 ACKKHGDHE 612
           A  K G+ E
Sbjct: 215 AYAKVGNME 223


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/805 (33%), Positives = 426/805 (52%), Gaps = 76/805 (9%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T L    +  Q  QI +Q+IL G+  D    S + K +        +++  ++F  +  P
Sbjct: 19  TLLNNATTLSQLLQIQAQLILHGIHYDL---SSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           + F+FN ++R +    +P+ +I LY  L    N+  DN+TY     A++       G L+
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H H +  G  S+++V + ++++Y        ARK+FD  P  D V WN++++G+      
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 214 EEAKFIYNKMPE---------------------------------------RNIIASNSM 234
           E++  ++  M +                                        ++     +
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I L+ + G   +   LF ++ + DL+S++A+IS Y  N   E A+ LF  ++     V+ 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             +V ++        ++    +  L++KIGI    ++  AL  +Y    E          
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE---------- 365

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                                V+ AR LFD   EK + SW+ MISGY Q+      +SLF
Sbjct: 366 ---------------------VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            EM    + P+  T+ S++SAC  L AL  GKW+H  I+   L+ N  + T L+DMY K 
Sbjct: 405 QEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A ++F    +K V +WNA+I G+ ++G   ++L++F EM +SG+ P  +TF+ +L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLV EG+  F+SM   +  +P S+HY CMVD+LGRAG L  A E IE MP+ P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            A WGALLGAC  H + EM     ++L +L P++ G++VLLSNI+++   +     VR +
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           + +R + K PGC++IE +   + F +GDR+HPQ   I  ML+++  K++  GY  +T+  
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 715 AF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           A  D++ EEKE  +  HSEKLAIAFGLI+  P   IRI+KNLR+C DCHTA KFIS+  +
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           R IVVRD +RFHHFK+G CSC D+W
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/713 (38%), Positives = 407/713 (57%), Gaps = 48/713 (6%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   +N+++  Y Q   PQ+A  ++  M   N                    
Sbjct: 120 VFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT------------------- 160

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
                 I  + L +G     Y+NN +IN          AR++FD  P  ++VSW +++ G
Sbjct: 161 ------ISWNGLVSG-----YINNGMIN---------EAREVFDRMPERNVVSWTAMVRG 200

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           YV    + EA+ ++ +MPE+N+++   M+    ++G + EACRLF  MP+KD+V+ + +I
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMI 260

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             Y Q     EA +LF  M    V+    ++   +    N  V  A      +  K  + 
Sbjct: 261 GGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ---NQQVDIARKLFEVMPEKNEVS 317

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                  A++  Y++CG +  A +LF+A     +++ N+MI  + + G V KAR +FD M
Sbjct: 318 -----WTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            EKD  +WS MI  Y +     + L LF  MQ  GIRP+  +L+SV+S C  L  LD G+
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA + ++   ++  + + L+ MY+K G +  A +VF     K V  WN++I G+A +G
Sbjct: 433 EIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHG 492

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L  ++L +F +M  SG+ P+++TFVGVL AC + G V +G   FNSM  ++++E   +HY
Sbjct: 493 LGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHY 552

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMVDLLGRAG L EA +LIE MPM  D   WGALLGAC+ H   ++ E   +KL+ L+P
Sbjct: 553 ACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEP 612

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT-H 685
            + G  +LLSNI+AS+GRWDDV E+R  M  R V K PGCS I     +H+F  GD + H
Sbjct: 613 KNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGH 672

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           P+ +EI+ +L+ ++  L+  GY PD   V  D+D+EEK  +L  HSEKLA+A+GL+ I  
Sbjct: 673 PEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPI 732

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIR+MKNLR+C DCH A K I++   REI++RD +RFHHFK GSCSC D+W
Sbjct: 733 GMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 216/485 (44%), Gaps = 96/485 (19%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS---- 141
           ++F  +   N   +  M+R Y++  +  +A  L+  M   NV         L Q      
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDE 240

Query: 142 ALRL-----------------------SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           A RL                        + E +++ D + +     +V    T+I  Y  
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR----RNVVSWTTMITGYVQ 296

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238
              +  ARKLF+  P  + VSW ++L GY N   ++EA  ++N MP ++++A N+MI+ F
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           G+ G V +A ++F +M +KD  +WSA+I  YE+  +  +AL LF  M    +  +   ++
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           SVLS CA L  +  G  +HA  V+   +  + + + L+ MY  CG +  A+++FD     
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK 476

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D++ WNS+I                               +GYAQH    E L +F +M 
Sbjct: 477 DVVMWNSII-------------------------------TGYAQHGLGVEALRVFHDMH 505

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             GI PD+ T V V+SAC++   +           K GL+I                   
Sbjct: 506 FSGIMPDDVTFVGVLSACSYTGNV-----------KKGLEIF------------------ 536

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           N++E  +  E+K +  +  ++      G  ++++++  +M    +  + I +  +LGACR
Sbjct: 537 NSMETKYQVEQK-IEHYACMVDLLGRAGKLNEAMDLIEKMP---MEADAIIWGALLGACR 592

Query: 539 -HMGL 542
            HM L
Sbjct: 593 THMKL 597


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/713 (38%), Positives = 407/713 (57%), Gaps = 48/713 (6%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   +N+++  Y Q   PQ+A  ++  M   N                    
Sbjct: 120 VFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT------------------- 160

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
                 I  + L +G     Y+NN +IN          AR++FD  P  ++VSW +++ G
Sbjct: 161 ------ISWNGLVSG-----YINNGMIN---------EAREVFDRMPERNVVSWTAMVRG 200

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           YV    + EA+ ++ +MPE+N+++   M+    ++G + EACRLF  MP+KD+V+ + +I
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMI 260

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             Y Q     EA +LF  M    V+    ++   +    N  V  A      +  K  + 
Sbjct: 261 GGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ---NQQVDIARKLFEVMPEKNEVS 317

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                  A++  Y++CG +  A +LF+A     +++ N+MI  + + G V KAR +FD M
Sbjct: 318 -----WTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            EKD  +WS MI  Y +     + L LF  MQ  GIRP+  +L+SV+S C  L  LD G+
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA + ++   ++  + + L+ MY+K G +  A +VF     K V  WN++I G+A +G
Sbjct: 433 EIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHG 492

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L  ++L +F +M  SG+ P+++TFVGVL AC + G V +G   FNSM  ++++E   +HY
Sbjct: 493 LGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHY 552

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMVDLLGRAG L EA +LIE MPM  D   WGALLGAC+ H   ++ E   +KL+ L+P
Sbjct: 553 ACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEP 612

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT-H 685
            + G  +LLSNI+AS+GRWDDV E+R  M  R V K PGCS I     +H+F  GD + H
Sbjct: 613 KNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGH 672

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           P+ +EI+ +L+ ++  L+  GY PD   V  D+D+EEK  +L  HSEKLA+A+GL+ I  
Sbjct: 673 PEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPI 732

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIR+MKNLR+C DCH A K I++   REI++RD +RFHHFK GSCSC D+W
Sbjct: 733 GMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 216/485 (44%), Gaps = 96/485 (19%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS---- 141
           ++F  +   N   +  M+R Y++  +  +A  L+  M   NV         L Q      
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDE 240

Query: 142 ALRL-----------------------SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           A RL                        + E +++ D + +     +V    T+I  Y  
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR----RNVVSWTTMITGYVQ 296

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238
              +  ARKLF+  P  + VSW ++L GY N   ++EA  ++N MP ++++A N+MI+ F
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           G+ G V +A ++F +M +KD  +WSA+I  YE+  +  +AL LF  M    +  +   ++
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           SVLS CA L  +  G  +HA  V+   +  + + + L+ MY  CG +  A+++FD     
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK 476

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D++ WNS+I                               +GYAQH    E L +F +M 
Sbjct: 477 DVVMWNSII-------------------------------TGYAQHGLGVEALRVFHDMH 505

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             GI PD+ T V V+SAC++   +           K GL+I                   
Sbjct: 506 FSGIMPDDVTFVGVLSACSYTGNV-----------KKGLEIF------------------ 536

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           N++E  +  E+K +  +  ++      G  ++++++  +M    +  + I +  +LGACR
Sbjct: 537 NSMETKYQVEQK-IEHYACMVDLLGRAGKLNEAMDLIEKMP---MEADAIIWGALLGACR 592

Query: 539 -HMGL 542
            HM L
Sbjct: 593 THMKL 597


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/567 (43%), Positives = 367/567 (64%), Gaps = 14/567 (2%)

Query: 244 VAEACRLFKEMPKKDLVSWSALISC---------YEQNEMYEEALVLFMNMI-DHRVMVD 293
           +  A + F ++   +  SW+ +I           +  N +  EAL+ F +M+ D  V  +
Sbjct: 65  IKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSL--EALLYFSHMLTDGLVEPN 122

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +     VL ACA L  ++ G  +H   VK+G+     +++ L+ +Y  CG +  A  LF 
Sbjct: 123 KFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFY 182

Query: 354 AGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 +++ WN MI GY++ G +  +R LFD+M  K VVSW+ MISG AQ+  F E + 
Sbjct: 183 QTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIE 242

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +F +MQ   + P+  TLVSV+ A + L A++ GKW+H +  KN ++I+ +LG+ LIDMY 
Sbjct: 243 MFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYS 302

Query: 473 KLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           K G +D A++VF G   +K   +W+A+I G AM+G A  +L+ F  M+++GVTP+++ ++
Sbjct: 303 KCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYI 362

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLV+EG   +  M+    L P  +HYGCMVDLLGRAG L+EAE+LI +MP+
Sbjct: 363 GVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPV 422

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD     ALLGACK HG+ EMGER+ + L+   P   G +V LSN+ AS+G W+ V++V
Sbjct: 423 KPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKV 482

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M    + K PGCS IE +G+IHEFL  D +HP+   I +ML+EM+ +L+  GY P+T
Sbjct: 483 RLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNT 542

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            +V  ++D++EK++ L  HSEK+AIAFGLI+  P  P++I+KNLR+C DCH++ K +S+ 
Sbjct: 543 TQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKI 602

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++R+I+VRDR RFHHF++GSCSCMD+W
Sbjct: 603 YNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 234/526 (44%), Gaps = 106/526 (20%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L   + +C++ +   QI +  I TG I    AA+ L+KF T L    E+ Y+ K F+ + 
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLT-LSTQREIKYARKFFSQIH 76

Query: 93  SPNGFIFNTMMRAYIQRNVPQ-------QAICLYKLMLNNN-VGVDNYTYPLLAQASALR 144
            PN F +NT++RA    +          +A+  +  ML +  V  + +T+P + +A A  
Sbjct: 77  HPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKL 136

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSI 203
             + EGK +H  V+K G  SD +V + L+ +Y +CG +  A  LF ++ +  ++V WN +
Sbjct: 137 ARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVM 196

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           + GYV                               R G++  +  LF  MP K +VSW+
Sbjct: 197 IDGYV-------------------------------RMGDLRASRELFDSMPNKSVVSWN 225

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +IS   QN  ++EA+ +F +M    V  + V +VSVL A + L  ++ G  VH  A K 
Sbjct: 226 VMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKN 285

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
            IE    L +ALI MYS CG I  A ++F+   N                          
Sbjct: 286 EIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRN-------------------------- 319

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
               +K+ ++WS +I G A H +  + L  F  MQ  G+ P +   + V+SAC+H   ++
Sbjct: 320 ----KKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVE 375

Query: 444 QGKWIHAY-IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +G+ I+ + +   GL         ++D+  + GC++ A                 LI+  
Sbjct: 376 EGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEA---------------EQLILNM 420

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
                               V P+++    +LGAC+  G ++ G R
Sbjct: 421 P-------------------VKPDDVILKALLGACKMHGNIEMGER 447


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/541 (43%), Positives = 346/541 (63%), Gaps = 6/541 (1%)

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT----SVHAL 319
           ALI    ++     AL L+ +++   ++     + S+L + A    V        +VH  
Sbjct: 42  ALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTH 101

Query: 320 AVKIGIECYINLQNALIHMYSS-CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           AVK+G++ ++ + NALI +++   G +     L      +D  ++N++I+ Y + G +  
Sbjct: 102 AVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLAD 161

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           ARALFD M  ++ VSWS M++GY Q     E L +F  MQ   +RPD+  LV V++AC  
Sbjct: 162 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQ 221

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             AL+QGKW+H Y++ +G+KIN   GT L+DMY K G V  A++VF   + K V +W  +
Sbjct: 222 HGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTM 281

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G AM+G   +++ +F++M+ SG+ P++I F+GVL AC H GLVD+G   F+SM++++ 
Sbjct: 282 IKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYG 341

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           ++P  +HYGCMVDLL R G L EA+E+I+ MPM PD   WGAL+  C+ H + E  E V 
Sbjct: 342 IKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVA 401

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           +  + L+PD  G +VLLSNI+A+ GR     E+R +M  +GV K PGCS +E NG+IH+F
Sbjct: 402 KHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQF 461

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKL-EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           + GD +HP+I +I +   E+  +++L EGY PD  EV  DI++EEKE  L RHSEKLAIA
Sbjct: 462 IVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIA 521

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           F LI+IS   PIRI KNLR+C+DCH   K IS+ + REIVVRDR RFH FK G+CSC D+
Sbjct: 522 FALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDY 581

Query: 798 W 798
           W
Sbjct: 582 W 582



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 182/411 (44%), Gaps = 69/411 (16%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL----I 153
           + + ++RA  +   P  A+ LY  +L   +    +T P L ++ AL  +V    +    +
Sbjct: 39  LHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTV 98

Query: 154 HDHVLKAGFDSDVYVNNTLINMYA-VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H H +K G D  V V+N LI ++A   G L+    L   +  +D  ++N+++  Y     
Sbjct: 99  HTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAY----- 153

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                                      R G +A+A  LF EMP ++ VSWSA+++ Y Q 
Sbjct: 154 --------------------------ARAGRLADARALFDEMPARNAVSWSAMVNGYVQA 187

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL +F  M    V  D+ V+V VL+ACA    ++ G  VH      GI+  +   
Sbjct: 188 GDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFG 247

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MYS CGE+  A  +F+     ++++W +M                          
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTM-------------------------- 281

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAY 451
                I G A H + SE + LF +M+  GIRPD+   + V+ ACTH   +D+G+ +  + 
Sbjct: 282 -----IKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSM 336

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
           +RK G+K        ++D+  + G +  A E+      E     W AL+ G
Sbjct: 337 VRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  + + N   ++ M+  Y+Q    ++A+ ++  M   +V  D+     +  A A   +
Sbjct: 165 LFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGA 224

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H ++   G   +++    L++MY+ CG++  A  +F+     ++++W +++ G
Sbjct: 225 LEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKG 284

Query: 207 YVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                   EA  ++ +M    I    IA   ++      G V +   LF  M +K
Sbjct: 285 LAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRK 339


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/717 (36%), Positives = 418/717 (58%), Gaps = 35/717 (4%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  M+  Y Q    + AI +++ M++++V    +T   +  + A   
Sbjct: 100 RVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVE 159

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +H  V+K G  S + V N+L+NMYA  GD           PV           
Sbjct: 160 CLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD-----------PV----------- 197

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                     AK ++++M  ++  + N+MI    + G V  A   F++M ++D+VSW+A+
Sbjct: 198 ---------TAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAM 248

Query: 266 ISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           IS Y Q+    EAL +F  M+ D     D+  + S LSACANL  +K G  +HA  ++  
Sbjct: 249 ISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTE 308

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAG--HNLDLISWNSMISGYLKCGSVEKARAL 382
            + +  + NALI MYS  G +  A+K+ +     NLD+I++ +++ GY+K G +  AR +
Sbjct: 309 FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRI 368

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD++  +DVV+W+ MI GY Q+    + + LF  M   G +P+  TL +++S  + L +L
Sbjct: 369 FDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASL 428

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
           D G+ IHA   ++G   +  +   LI MY K G +++A  VF+    ++   +W ++II 
Sbjct: 429 DHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIA 488

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            A +GL +++L +F  M ++G+ P+ IT+VGVL AC H+GLV++G  ++N M   H++ P
Sbjct: 489 LAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIP 548

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
              HY CM+DL GRAG+L+EA   IE+MP+ PDV  WG+LL +CK H + E+ E    +L
Sbjct: 549 TPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERL 608

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
           + ++P++ G +  L+N++++ G+W++   +R  M  +GV K  G S ++    +H F   
Sbjct: 609 LLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVD 668

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D  HPQ + I  M+ ++ K++K  G+ PDT  V  D+++E KE  L  HSEKLAIAFGLI
Sbjct: 669 DGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLI 728

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                  +RIMKNLR+CNDCH+A KFIS+   REI+VRD  RFHHFK+G CSC D+W
Sbjct: 729 CTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/525 (29%), Positives = 259/525 (49%), Gaps = 68/525 (12%)

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           F GK IH  ++KAG    V++ N L+N YA  G +  A ++FDE                
Sbjct: 30  FTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDE---------------- 73

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                          MP +++ + N ++  + + G + EA R+F+EMP+ D VSW+A+I 
Sbjct: 74  ---------------MPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIV 118

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y Q   +E A+ +F  M+   V   +  + +VL++CA +  +  G  VH+  VK G+  
Sbjct: 119 GYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSS 178

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
           YI++ N+L++MY+  G+  TA+ +FD        SWN+MIS +++ G V+ A+  F+ MI
Sbjct: 179 YISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMI 238

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGK 446
           E+DVVSW+ MISGY QH    E L +F +M      +PD+ TL S +SAC +L  L  GK
Sbjct: 239 ERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGK 298

Query: 447 WIHAYI--------------------RKNGLKI-------------NSILGTTLIDMYMK 473
            IHA+I                    +  G++I             + I  T L+D Y+K
Sbjct: 299 QIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVK 358

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           LG ++ A  +F     + V +W A+I+G+  NG    ++E+F  M K G  PN  T   +
Sbjct: 359 LGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATM 418

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L     +  +D G +   S  +       S     ++ +  ++G + +A  +   +    
Sbjct: 419 LSVSSSLASLDHGRQIHASATRSGNASSVSVS-NALITMYAKSGSINDARWVFNLIHWKR 477

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           D  TW +++ A  +HG  E    +  +++E  ++PDH  +  +LS
Sbjct: 478 DTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/802 (33%), Positives = 421/802 (52%), Gaps = 77/802 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + K  +F    Q  +Q IL G     F  + L K +  L  F    ++  +F  +  P+ 
Sbjct: 19  INKASTFPHLAQTHAQFILNGY---RFDLATLTKLTQKLFDFSATRHARALFFSVPKPDI 75

Query: 97  FIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           F+FN ++R +   + P  +I LY  L  N N+  DN+TY     A +    +    L+H 
Sbjct: 76  FLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLM---LLHA 132

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           H +  G+ S+V+V + L+++Y     +  ARK+FD  P  D V WN+++ G V     ++
Sbjct: 133 HSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDD 192

Query: 216 AKFIYNKMPERNIIASNS---------------------------------------MIV 236
           +  ++ +M    +   +S                                       +I 
Sbjct: 193 SIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLIS 252

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           L+ + G+V  A  LF+ + + DL++++A+IS +  N   E ++ LF  ++     V    
Sbjct: 253 LYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSST 312

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           +V ++   +    +    S+H   VK GI     +  A   +Y+   EI           
Sbjct: 313 IVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEI----------- 361

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             DL                  AR LFD   EK VV+W+ MISGY Q+      +SLF E
Sbjct: 362 --DL------------------ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKE 401

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M      P+  T+ +++SAC  L +L  GKW+H  I+   L+ N  + T L+DMY K G 
Sbjct: 402 MMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGN 461

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A ++F    EK   +WN +I G+ ++G   ++L++++EM   G  P+ +TF+ VL A
Sbjct: 462 ISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYA 521

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV EG   F++M+ ++R+EP  +HY CMVD+LGR+G L++A E I+ MP+ P  A
Sbjct: 522 CSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPA 581

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WG LLGAC  H D ++      +L EL P   G++VLLSNI++ +  +     +R ++ 
Sbjct: 582 VWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVK 641

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
           +R + K PGC++IE NG  H F++GDR+H    +I   L+++  K++  GY  +T+    
Sbjct: 642 KRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALH 701

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+++EEKE  +  HSEKLAIAFGLIT  P N IRI+KNLR+C DCHTA KFIS+  +R I
Sbjct: 702 DVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVI 761

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           VVRD +RFHHFK G CSC D+W
Sbjct: 762 VVRDANRFHHFKDGICSCGDYW 783



 Score = 42.7 bits (99), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 21/241 (8%)

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           TL S+I+  +    L Q    HA    NG + +    T L           +A  +F   
Sbjct: 14  TLFSLINKASTFPHLAQ---THAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSV 70

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGAC---RHMGLV 543
            +  +  +N L+ GF++N     S+ +++ +++ + ++P+  T+   + AC   +H+ L+
Sbjct: 71  PKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLL 130

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
                H +S+I  +    N      +VDL  +   +  A ++ + MP   D   W  ++ 
Sbjct: 131 -----HAHSIIDGY--GSNVFVGSALVDLYCKFSRVVYARKVFDGMP-ERDTVLWNTMIN 182

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR-GMMVRRGVVK 662
              K+   +   ++ R++V      DG  V  S + A      ++ E++ GM ++   +K
Sbjct: 183 GLVKNCCFDDSIQLFREMVA-----DGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 663 I 663
           I
Sbjct: 238 I 238


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/550 (41%), Positives = 357/550 (64%), Gaps = 1/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F ++   +L  ++ LI C+       +A   +  M+  R+  D +    ++ A + +  
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           V  G   H+  V+ G +  + ++N+L+HMY++CG I  A ++F      D++SW SM++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y KCG VE AR +FD M  +++ +WS MI+GYA+++ F + + LF  M+  G+  +E  +
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VSVIS+C HL AL+ G+  + Y+ K+ + +N ILGT L+DM+ + G ++ A+ VF G  E
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
               SW+++I G A++G A K++  FS+M   G  P ++TF  VL AC H GLV++G   
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + +M ++H +EP  +HYGC+VD+LGRAG L EAE  I  M + P+    GALLGACK + 
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+ ERVG  L++++P+H G++VLLSNI+A  G+WD +  +R MM  + V K PG S+I
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492

Query: 670 EANGIIHEFLAG-DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           E +G I++F  G D+ HP++ +I    +E+  K++L GY  +T +  FD+D+EEKE+++ 
Sbjct: 493 EIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIH 552

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLAIA+G++   P   IRI+KNLR+C DCHT  K IS  + RE++VRDR+RFHHF+
Sbjct: 553 MHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFR 612

Query: 789 HGSCSCMDFW 798
           +G CSC D+W
Sbjct: 613 NGVCSCRDYW 622



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 157/558 (28%), Positives = 258/558 (46%), Gaps = 103/558 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE----MSYSFKIFAFLE 92
           LQ C SF     I   ++ T LI+D F ASRL+    D   F +    + Y++ IF+ ++
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           +PN F+FN ++R +     P +A   Y  ML + +  DN T+P L +AS+    V  G+ 
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
            H  +++ GF +DVYV N+L++MYA CG ++AA ++F +    D+VSW S++AGY     
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGM 198

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           VE A+ ++++MP RN                               L +WS +I+ Y +N
Sbjct: 199 VENAREMFDEMPHRN-------------------------------LFTWSIMINGYAKN 227

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
             +E+A+ LF  M    V+ +E V+VSV+S+CA+L  ++ G   +   VK  +   + L 
Sbjct: 228 NCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG 287

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ M+  CG+I  A  +F+     D +SW+S+I G    G   KA   F  MI     
Sbjct: 288 TALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI----- 342

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                              SL       G  P + T  +V+SAC+H   +++G  I+  +
Sbjct: 343 -------------------SL-------GFIPRDVTFTAVLSACSHGGLVEKGLEIYENM 376

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
           +K+                             HG E + +  +  ++    M G A K  
Sbjct: 377 KKD-----------------------------HGIEPR-LEHYGCIV---DMLGRAGKLA 403

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVD 571
           E  + + K  V PN      +LGAC+     +   R  N +I   +++P +S +Y  + +
Sbjct: 404 EAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLI---KVKPEHSGYYVLLSN 460

Query: 572 LLGRAGMLKEAEELIESM 589
           +   AG   + E L + M
Sbjct: 461 IYACAGQWDKIESLRDMM 478


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/557 (43%), Positives = 351/557 (63%), Gaps = 4/557 (0%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G +  +  LF       +  W+A+I  +    ++E+AL  +  M+   V  +     S+L
Sbjct: 76  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 135

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
             C     ++ G ++H+ AVK+G +  + ++  L+ +Y+  G++ +A++LFD      L+
Sbjct: 136 KLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 191

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           S  +M++ Y K G ++ AR LFD M E+D V W+ MI GY Q+   +E L LF  M    
Sbjct: 192 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 251

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
            +P+E T++SV+SAC  L AL+ G+W+H+YI  NG++ N  +GT L+DMY K G +++A 
Sbjct: 252 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 311

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            VF   ++K V +WN++I+G+AM+G + ++L++F  M + G+ P  ITF+G+L AC H G
Sbjct: 312 LVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 371

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            V EG   FN M  E+ +EP  +HYGCMV+LLGRAG +++A EL+++M + PD   WG L
Sbjct: 372 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 431

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           LGAC+ HG   +GE++   LV+    + G ++LLSNI+A+ G WD V  +R MM   GV 
Sbjct: 432 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 491

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K PGCS IE N  +HEFLAG   HP+  EI  ML+E+   LK  GY P T  V  DI + 
Sbjct: 492 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 551

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           EKE +L  HSEKLAIAFGLI   P   I+I+KNLR+C DCH   K IS+   R+IVVRDR
Sbjct: 552 EKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDR 611

Query: 782 HRFHHFKHGSCSCMDFW 798
           +RFHHF +GSCSC D+W
Sbjct: 612 NRFHHFVNGSCSCGDYW 628



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 212/470 (45%), Gaps = 101/470 (21%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            + YS  +F   ++P+ F +  ++  +  R + +QA+  Y  ML   V  + +T+     
Sbjct: 77  RLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF----- 131

Query: 140 ASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +S L+L   E GK +H   +K GFDSD+YV   L+++YA  GD+ +A++LFD        
Sbjct: 132 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-------- 183

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                   MPE+++++  +M+  + + G +  A  LF  M ++D
Sbjct: 184 -----------------------TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V W+ +I  Y QN M  EALVLF  M+  +   +EV V+SVLSAC  L  +++G  VH+
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
                GI+  +++  AL+ MYS CG +  A  +FD   + D+++WNSMI GY        
Sbjct: 281 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY-------- 332

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                                  A H    E L LF  M   G+ P   T + ++SAC H
Sbjct: 333 -----------------------AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 369

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
              + +G W                     D++       N ++  +G E K +  +  +
Sbjct: 370 SGWVTEG-W---------------------DIF-------NKMKDEYGIEPK-IEHYGCM 399

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +      G  +++ E+   M    + P+ + +  +LGACR  G +  G +
Sbjct: 400 VNLLGRAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEK 446



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 37/271 (13%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y   G ++ + ALF       V  W+ +I G+A      + L+ + +M   G+ P+  T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV------------ 477
            S++  C     ++ GK +H+   K G   +  + T L+D+Y + G V            
Sbjct: 132 SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 478 -------------------DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                              D A  +F G EE+    WN +I G+  NG+ +++L +F  M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            K+   PNE+T + VL AC  +G ++ G R  +S I+ + ++ N      +VD+  + G 
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHG 609
           L++A  + + +    DV  W +++     HG
Sbjct: 307 LEDARLVFDKID-DKDVVAWNSMIVGYAMHG 336



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 15/256 (5%)

Query: 61  DTFAASRLIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           DT     L+  +  L  +    E+  +  +F  +E  +G  +N M+  Y Q  +P +A+ 
Sbjct: 183 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 242

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L++ ML      +  T   +  A     ++  G+ +H ++   G   +V+V   L++MY+
Sbjct: 243 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYS 302

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----S 233
            CG L  AR +FD+    D+V+WNS++ GY      +EA  ++  M    +  +N     
Sbjct: 303 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIG 362

Query: 234 MIVLFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++   G  G V E   +F +M      +  +  +  +++   +    E+A  L  NM   
Sbjct: 363 ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM--- 419

Query: 289 RVMVDEVVVVSVLSAC 304
            +  D V+  ++L AC
Sbjct: 420 NIEPDPVLWGTLLGAC 435



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 419 HHGIRPDE-ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           HH I  +  A L+      +HL+       IHA + ++GL  + IL   L   Y  LG +
Sbjct: 25  HHFISTNRLAVLIDKSKTISHLLQ------IHAVLFRHGLDHHPILNFKLQRSYASLGRL 78

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           D ++ +F  T+   V  W A+I G A+ GL +++L  +++M   GV PN  TF  +L  C
Sbjct: 79  DYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC 138

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
                ++ G +  +S   +   + +      ++D+  R G +  A++L ++MP    + +
Sbjct: 139 P----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP-EKSLVS 192

Query: 598 WGALLGACKKHGD 610
             A+L    KHG+
Sbjct: 193 LTAMLTCYAKHGE 205


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/684 (37%), Positives = 394/684 (57%), Gaps = 55/684 (8%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N+ I  YA  G + +AR++FDE P   +VSWNS++AGY   +   EA+++++KMPERN +
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM-----N 284
           + N +I  + +   V+EA + F  MP++++VSW+A++  Y Q  +  EA  LF      N
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN 139

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY---------------- 328
           ++   VM+  ++ V  +     L  +     V A    I   C                 
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPR 199

Query: 329 --INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             +     +I  Y   G++  A KLF+     + +SW +M+ GY + G +E+A  LFDAM
Sbjct: 200 RNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAM 259

Query: 387 IEKDVVSWSTMISGYAQHDQFS-------------------------------ETLSLFM 415
             K VV+ + MI G+ Q+ + +                               E L+LF 
Sbjct: 260 PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFA 319

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
            MQ  G++ +  +L+SV+S C  L +LD G+ +HA + K+    +  + + LI MY+K G
Sbjct: 320 LMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCG 379

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A ++F     K +  WN++I G+A +GL +++L++F EM  SG+  + +TFVGVL 
Sbjct: 380 DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLS 439

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC + G V EG   F SM  ++ +EP ++HY CMVDLLGRAG++ +A +LI+ MP+  D 
Sbjct: 440 ACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADA 499

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             WGALLGAC+ H +  + E   +KL++L+P + G ++LLSNI+ASKGRW DV E+R  M
Sbjct: 500 IIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNM 559

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRT-HPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
             + V K PGCS IE    +H F  G  T HP+++ I  ML+++   L+  GY PD+  V
Sbjct: 560 RVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFV 619

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+D+EEK  +L  HSE+LA+AFGL+ +    PIR+MKNLR+C DCH+A K I++   R
Sbjct: 620 LHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGR 679

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI++RD +RFHHFK G CSC D+W
Sbjct: 680 EIILRDANRFHHFKDGFCSCRDYW 703



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 207/447 (46%), Gaps = 62/447 (13%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQR-----------NVPQQAICLYKLMLNNNVGV 129
           +S + K F  +   N   +  M+R Y+Q             +P++ +  + +ML   + V
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQV 153

Query: 130 DNY-----------TYPLLAQASALRLSVFEGKLIHDHVLKAGFDS----DVYVNNTLIN 174
                            ++A+ + +     EG+L     L   FD     +V    T+I+
Sbjct: 154 RRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAREL---FDEMPRRNVISWTTMIS 210

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSM 234
            Y   G +  ARKLF+  P  + VSW ++L GY     +EEA  +++ MP + ++A N+M
Sbjct: 211 GYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAM 270

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I+ FG+ G VA+A ++F ++ +KD  +WSA+I  YE+     EAL LF  M    V  + 
Sbjct: 271 ILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNF 330

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             ++SVLS CA+L  +  G  VHA  VK   +  + + + LI MY  CG++  A ++FD 
Sbjct: 331 PSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDR 390

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               D++ WNS+I+GY                               AQH    E L +F
Sbjct: 391 FSPKDIVMWNSIITGY-------------------------------AQHGLVEEALQVF 419

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL-KINSILGTTLIDMYMK 473
            EM   G+  D  T V V+SAC++   + +G  I   ++   L +  +     ++D+  +
Sbjct: 420 HEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGR 479

Query: 474 LGCVDNALEVFHGTE-EKGVSSWNALI 499
            G V++A+++      E     W AL+
Sbjct: 480 AGLVNDAMDLIQKMPVEADAIIWGALL 506



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 198/436 (45%), Gaps = 66/436 (15%)

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           +++NS +A Y     +E A+ ++++MP++ I++ NSM+  + +     EA  LF +MP++
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRV-----MVDEVVVVSVLSACANLTVVKA 312
           + VSW+ LIS Y +N M  EA   F  M +  V     MV   V   ++S    L     
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 313 GTSVHALAVKIGIECYIN------------------LQNALIHMYSSCGEITTAEKLFDA 354
             +V +  V +G    +                    +  +I  Y   G +  A +LFD 
Sbjct: 137 EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDE 196

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               ++ISW +MISGY++ G V+ AR LF+ M EK+ VSW+ M+ GY Q  +  E   LF
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELF 256

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
                      +A  V  + AC  +                      ILG      + + 
Sbjct: 257 -----------DAMPVKAVVACNAM----------------------ILG------FGQN 277

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G V  A +VF    EK   +W+A+I  +   G   ++L +F+ M++ GV  N  + + VL
Sbjct: 278 GEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVL 337

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP- 593
             C  +  +D G R  ++ + + + + +      ++ +  + G L +A ++ +    SP 
Sbjct: 338 SVCASLASLDHG-RQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDR--FSPK 394

Query: 594 DVATWGALLGACKKHG 609
           D+  W +++    +HG
Sbjct: 395 DIVMWNSIITGYAQHG 410



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E++ + ++F  +   +   ++ M++ Y ++    +A+ L+ LM    V  +  +   +  
Sbjct: 279 EVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLS 338

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   S+  G+ +H  ++K+ FDSDV+V + LI MY  CGDL  AR++FD     D+V 
Sbjct: 339 VCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVM 398

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMP 255
           WNSI+ GY     VEEA  ++++M    +       V         G V E   +F+ M 
Sbjct: 399 WNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMK 458

Query: 256 KKDLVS-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            K LV      ++ ++    +  +  +A+ L   M    V  D ++  ++L AC
Sbjct: 459 SKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKM---PVEADAIIWGALLGAC 509


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/804 (34%), Positives = 436/804 (54%), Gaps = 75/804 (9%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           + T  + C + +    + ++++++  I +   +++L+     L     ++ +   F  ++
Sbjct: 57  VHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLG---NVALARHTFDHIQ 113

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           + + + +N M+  Y +     + I C    ML++ +  D  T+P + +A     +V +G 
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGN 170

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH   LK GF  DVYV  +LI++Y+    +  AR LFDE PV D+ SWN++++GY  + 
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230

Query: 212 NVEEAKFIYNKMP-----------------------------------ERNIIASNSMIV 236
           N +EA  + N +                                    E  +  SN +I 
Sbjct: 231 NAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           L+   G + +  ++F  M  +DL+SW+++I  YE NE    A+ LF  M   R+  D + 
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECY-INLQNALIHMYSSCGEITTAEKLFDAG 355
           ++S+ S  + L  ++A  SV    ++ G     I + NA++ MY+               
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA--------------- 395

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                           K G V+ ARA+F+ +   DV+SW+T+ISGYAQ+   SE + ++ 
Sbjct: 396 ----------------KLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 416 EMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+  G I  ++ T VSV+ AC+   AL QG  +H  + KNGL ++  + T+L DMY K 
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +++AL +F+         WN LI     +G  +K++ +F EM   GV P+ ITFV +L
Sbjct: 500 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 559

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLVDEG   F  M  ++ + P+ KHYGCMVD+ GRAG L+ A + I+SM + PD
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + WGALL AC+ HG+ ++G+     L E++P+H G+HVLLSN++AS G+W+ V E+R +
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 679

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
              +G+ K PG S +E +  +  F  G++THP   E+   L  +  KLK+ GY PD   V
Sbjct: 680 AHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFV 739

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++ +EKE  L  HSE+LAIAF LI       IRI KNLR+C DCH+  KFIS+  +R
Sbjct: 740 LQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITER 799

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFHHFK+G CSC D+W
Sbjct: 800 EIIVRDSNRFHHFKNGVCSCGDYW 823


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/709 (36%), Positives = 401/709 (56%), Gaps = 37/709 (5%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASA--LRLSVFEGKLIH 154
           + N ++ AY + +    A+ +++ L+ + ++  D+Y++  L  A+     +SV     + 
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQ 182

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             VLK+G    + V+N L+ +Y  C  L A R                            
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATR---------------------------- 214

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+ + ++MP+++ +   +M+V + R+G+V  A  +F+E+  K  V W+A+IS Y  + M
Sbjct: 215 DARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGM 274

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI----ECYIN 330
             EA  LF  M+  RV +DE    SVLSACAN      G SVH    ++      E  + 
Sbjct: 275 VVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALP 334

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NAL+ +YS CG I  A ++FD   + D++SWN+++SGY++   ++KA  +F+ M  K+
Sbjct: 335 VNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 391 VVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
            +SW  M+SGY  H  FSE  L LF  M+   ++P + T    ISAC  L +L  GK +H
Sbjct: 395 ELSWMVMVSGYV-HGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLH 453

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            ++ + G + ++  G  LI MY + G V  A  +F         SWNA+I     +G   
Sbjct: 454 GHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGR 513

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++LE+F  M   G+ P+ I+F+ VL AC H GLVDEG ++F SM ++  + P   HY  +
Sbjct: 514 EALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRL 573

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           +DLLGRAG + EA +LI++MP  P  + W A+L  C+  GD E+G     +L ++ P HD
Sbjct: 574 IDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G ++LLSN +++ GRW D   VR +M  RGV K PGCS IEA   +H F+ GD  HP+ +
Sbjct: 634 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAH 693

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           ++   L+ +  +++  GY PDT  V  D++  +KE  LF HSE+LA+ FGL+ + P   +
Sbjct: 694 KVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATV 753

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ++KNLRIC+DCH    F+S+A  REIVVRD  RFHHFK G CSC ++W
Sbjct: 754 TVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 58/316 (18%)

Query: 7   LAHLSSTIKSSVNAKPIFKPTINLSI---LETHLQKCQSFKQFTQILSQMILTGLIADTF 63
            AH  S        +P F P   L +   L T   KC +     +I           D  
Sbjct: 310 FAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIF----------DNM 359

Query: 64  AASRLIKFSTDLLPFIEMS---YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
            +  ++ ++T L  ++E S    + ++F  +   N   +  M+  Y+     + A+ L+ 
Sbjct: 360 KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFN 419

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            M   +V   +YTY     A     S+  GK +H H+++ GF+      N LI MYA CG
Sbjct: 420 RMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCG 479

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-------- 226
            +  A  +F   P +D VSWN++++      +  EA  ++++M      P+R        
Sbjct: 480 AVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 227 ----------------------NIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                  II        +I L GR G + EA  L K MP +   
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 261 S-WSALIS-CYEQNEM 274
           S W A++S C    +M
Sbjct: 600 SIWEAILSGCRTSGDM 615


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/546 (43%), Positives = 354/546 (64%), Gaps = 2/546 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSAC 304
           A ++     K  L + +++I  + ++ + E++   +  ++   + +  D   V  ++ AC
Sbjct: 67  ANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQAC 126

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             L + + G  VH + ++ G +   ++Q  LI +Y+  G + +  K+F++    D +   
Sbjct: 127 TGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRT 186

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +M++   +CG V  AR LF+ M EKD ++W+ MISGYAQ  +  E L+LF  MQ  G++ 
Sbjct: 187 AMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKV 246

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +  +++SV+SACT L ALDQG+W H+YI +N +KI   LGTTL+D+Y K G +D A+EVF
Sbjct: 247 NGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVF 306

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            G EEK V +W++ + G AMNG  +K L++FS MK+ GVTPN +TFV VL  C  +G VD
Sbjct: 307 WGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 366

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG +HF+SM  E  +EP   HYGC+VDL  RAG L++A  +I+ MPM    A W +LL A
Sbjct: 367 EGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHA 426

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
            + + + E+G    +K++EL+  + G +VLLSNI+A    WD+V  VR  M  +GV K P
Sbjct: 427 SRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQP 486

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS++E NG +HEF  GD++HP+ NEID +  +++++L+L GY  DT  V FDID+EEKE
Sbjct: 487 GCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKE 546

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEK AIAFG++++    PIRI+KNLR+C DCH  +  IS+ F+REI+VRDR+RF
Sbjct: 547 DALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRF 606

Query: 785 HHFKHG 790
           HHFK G
Sbjct: 607 HHFKDG 612



 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/507 (36%), Positives = 295/507 (58%), Gaps = 32/507 (6%)

Query: 293  DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            +EV  +S++SAC +    + G  +H L +K G+   + + NAL+++Y   G++ ++ KL 
Sbjct: 636  NEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKL- 694

Query: 353  DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                                          F+ +  K++VSW+TMI  + Q+    E L+
Sbjct: 695  ------------------------------FEDLSVKNLVSWNTMIVIHLQNGLAEEGLA 724

Query: 413  LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
             F   +  G++PD+AT ++V+  C  +  +   + IH  I   G   N+ + T L+D+Y 
Sbjct: 725  YFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYA 784

Query: 473  KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
            KLG ++++  VF         +W A++  +A +G    +++ F  M   G++P+ +TF  
Sbjct: 785  KLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTH 844

Query: 533  VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            +L AC H GLV+EG  +F +M + +R+EP   HY CMVDL+GR+G+L++A  LI+ MPM 
Sbjct: 845  LLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPME 904

Query: 593  PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
            P    WGALLGAC+ + D ++G +  ++L EL+P     +++LSNI+++ G W D   +R
Sbjct: 905  PSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIR 964

Query: 653  GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDT 711
             +M ++G+V+  G S IE    IH+F+ GD +HP+  +I   L E+ KK+K E G+   T
Sbjct: 965  NLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRT 1024

Query: 712  LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
              V  D+D++ KE  + +HSEK+A+AFGL+ ISP  PI I KNLRIC DCH  AK IS  
Sbjct: 1025 EFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLI 1084

Query: 772  FDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R I++RD  RFHHF  GSCSC D+W
Sbjct: 1085 EKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 212/487 (43%), Gaps = 75/487 (15%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
           V ++ +  P I+L      L    +FK+  QI +++ + G + D     + +K +  L  
Sbjct: 8   VMSRIVKHPAISL------LDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVK-AVALSD 60

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNYTYP 135
              + Y+ +I    + P  F  N+M+RA+ +  VP+++   Y  +L++  G+  DNYT  
Sbjct: 61  HTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVN 120

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            L QA         G  +H   ++ GFD+D +V   LI++YA  G L +  K+F+     
Sbjct: 121 FLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYP 180

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           D V   +++       +V  A+ ++  MPE++ IA N+M                     
Sbjct: 181 DFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAM--------------------- 219

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
                     IS Y Q     EAL LF  M    V V+ V ++SVLSAC  L  +  G  
Sbjct: 220 ----------ISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRW 269

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
            H+   +  I+  + L   L+ +Y+ CG++  A ++F      ++ +W+S ++G    G 
Sbjct: 270 AHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGF 329

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
            EK                                L LF  M+  G+ P+  T VSV+  
Sbjct: 330 GEKC-------------------------------LKLFSLMKQDGVTPNAVTFVSVLRG 358

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEEKG-V 492
           C+ +  +D+G+  H    +N   I   L     L+D+Y + G +++A+ +      K   
Sbjct: 359 CSVVGFVDEGQ-KHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHA 417

Query: 493 SSWNALI 499
           + W++L+
Sbjct: 418 AVWSSLL 424



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 145/309 (46%), Gaps = 39/309 (12%)

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKE 253
           V++ S+++  V+  N EE   I+  + +  ++      N+++ L+G+ G++  +C+LF++
Sbjct: 638 VTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFED 697

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +  K+LVSW+ +I  + QN + EE L  F       +  D+   ++VL  C ++ VV+  
Sbjct: 698 LSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLS 757

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H L +  G      +  AL+ +Y+  G +  +  +F     L++ S +SM       
Sbjct: 758 QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVF-----LEITSPDSM------- 805

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                              +W+ M++ YA H    + +  F  M H+G+ PD  T   ++
Sbjct: 806 -------------------AWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLL 846

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EK 490
           +AC+H   +++G++    + K   +I   L   + ++D+  + G + +A  +      E 
Sbjct: 847 NACSHSGLVEEGRYYFETMSKR-YRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEP 905

Query: 491 GVSSWNALI 499
               W AL+
Sbjct: 906 SSGVWGALL 914



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 19/237 (8%)

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E LS  M  +  G RP+E T +S+ISAC H    ++G  IH  + K+G+     +   L+
Sbjct: 621 EVLSRMMRSEV-GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALM 679

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           ++Y K G + ++ ++F     K + SWN +I+    NGLA++ L  F+  +  G+ P++ 
Sbjct: 680 NLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQA 739

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+ VL  C  +G+V    +  + +I       N+     ++DL  + G L+++  +   
Sbjct: 740 TFLAVLRVCEDIGVVRLS-QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLE 798

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE---------LQPDHDGFHVLLS 636
           +  SPD   W A+L A   HG        GR  ++         L PDH  F  LL+
Sbjct: 799 IT-SPDSMAWTAMLAAYATHG-------YGRDAIKHFELMVHYGLSPDHVTFTHLLN 847



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 39/204 (19%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EG  IH  V+K+G   +V V N L+N+Y   GDL ++ KLF++  V +LVSWN+++  ++
Sbjct: 655 EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 714

Query: 209 NADNVEEAKFIYNK------MPER---------------------------------NII 229
                EE    +N        P++                                 N  
Sbjct: 715 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 774

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            + +++ L+ + G + ++  +F E+   D ++W+A+++ Y  +    +A+  F  M+ + 
Sbjct: 775 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG 834

Query: 290 VMVDEVVVVSVLSACANLTVVKAG 313
           +  D V    +L+AC++  +V+ G
Sbjct: 835 LSPDHVTFTHLLNACSHSGLVEEG 858



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA--- 140
           S K+F  L   N   +NTM+  ++Q  + ++ +  + +     +  D  T+  + +    
Sbjct: 691 SCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCED 750

Query: 141 -SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
              +RLS    + IH  ++  GF+++  +   L+++YA  G L  +  +F E    D ++
Sbjct: 751 IGVVRLS----QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMA 806

Query: 200 WNSILAGY-------------------------------VNADN----VEEAKFIYNKMP 224
           W ++LA Y                               +NA +    VEE ++ +  M 
Sbjct: 807 WTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMS 866

Query: 225 ERNIIAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
           +R  I       + M+ L GR G + +A  L KEMP +     W AL+
Sbjct: 867 KRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALL 914


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/557 (43%), Positives = 350/557 (62%), Gaps = 4/557 (0%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G +  +  LF       +  W+A+I  +    ++E+AL  +  M+   V  +     S+L
Sbjct: 23  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
             C     ++ G ++H+ AVK+G +  + ++  L+ +Y+  G++ +A++LFD      L+
Sbjct: 83  KLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           S  +M++ Y K G ++ AR LFD M E+D V W+ MI GY Q+   +E L LF  M    
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
            +P+E T++SV+SAC  L AL+ G+W+H+YI  NG++ N  +GT L+DMY K G +++A 
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            VF   ++K V +WN++I+G+AM G + ++L++F  M + G+ P  ITF+G+L AC H G
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 318

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            V EG   FN M  E+ +EP  +HYGCMV+LLGRAG +++A EL+++M + PD   WG L
Sbjct: 319 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 378

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           LGAC+ HG   +GE++   LV+    + G ++LLSNI+A+ G WD V  +R MM   GV 
Sbjct: 379 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 438

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K PGCS IE N  +HEFLAG   HP+  EI  ML+E+   LK  GY P T  V  DI + 
Sbjct: 439 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 498

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           EKE +L  HSEKLAIAFGLI   P   I+I+KNLR+C DCH   K IS+   R+IVVRDR
Sbjct: 499 EKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDR 558

Query: 782 HRFHHFKHGSCSCMDFW 798
           +RFHHF +GSCSC D+W
Sbjct: 559 NRFHHFVNGSCSCGDYW 575



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 215/470 (45%), Gaps = 101/470 (21%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            + YS  +F   ++P+ F +  ++  +  R + +QA+  Y  ML   V  + +T+     
Sbjct: 24  RLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF----- 78

Query: 140 ASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +S L+L   E GK +H   +K GFDSD+YV   L+++YA  GD+ +A++LFD        
Sbjct: 79  SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-------- 130

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                   MPE+++++  +M+  + + G +  A  LF  M ++D
Sbjct: 131 -----------------------TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 167

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V W+ +I  Y QN M  EALVLF  M+  +   +EV V+SVLSAC  L  +++G  VH+
Sbjct: 168 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 227

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
                GI+  +++  AL+ MYS CG +  A  +FD   + D+++WNSMI GY        
Sbjct: 228 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY-------- 279

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                              + G++Q     E L LF  M   G+ P   T + ++SAC H
Sbjct: 280 ------------------AMXGFSQ-----EALQLFKSMCRMGLHPTNITFIGILSACGH 316

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
              + +G W                     D++       N ++  +G E K +  +  +
Sbjct: 317 SGWVTEG-W---------------------DIF-------NKMKDEYGIEPK-IEHYGCM 346

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +      G  +++ E+   M    + P+ + +  +LGACR  G +  G +
Sbjct: 347 VNLLGRAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEK 393



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 37/264 (14%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y   G ++ + ALF       V  W+ +I G+A      + L+ + +M   G+ P+  T 
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV------------ 477
            S++  C     ++ GK +H+   K G   +  + T L+D+Y + G V            
Sbjct: 79  SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 478 -------------------DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                              D A  +F G EE+    WN +I G+  NG+ +++L +F  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            K+   PNE+T + VL AC  +G ++ G R  +S I+ + ++ N      +VD+  + G 
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 579 LKEAEELIESMPMSPDVATWGALL 602
           L++A  + + +    DV  W +++
Sbjct: 254 LEDARLVFDKID-DKDVVAWNSMI 276



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 15/256 (5%)

Query: 61  DTFAASRLIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           DT     L+  +  L  +    E+  +  +F  +E  +G  +N M+  Y Q  +P +A+ 
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L++ ML      +  T   +  A     ++  G+ +H ++   G   +V+V   L++MY+
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYS 249

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----S 233
            CG L  AR +FD+    D+V+WNS++ GY      +EA  ++  M    +  +N     
Sbjct: 250 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIG 309

Query: 234 MIVLFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++   G  G V E   +F +M      +  +  +  +++   +    E+A  L  NM   
Sbjct: 310 ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM--- 366

Query: 289 RVMVDEVVVVSVLSAC 304
            +  D V+  ++L AC
Sbjct: 367 NIEPDPVLWGTLLGAC 382



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y  LG +D ++ +F  T+   V  W A+I G A+ GL +++L  +++M   GV PN  TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
             +L  C     ++ G +  +S   +   + +      ++D+  R G +  A++L ++MP
Sbjct: 79  SSILKLCP----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 591 MSPDVATWGALLGACKKHGD 610
               + +  A+L    KHG+
Sbjct: 134 -EKSLVSLTAMLTCYAKHGE 152


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/753 (36%), Positives = 417/753 (55%), Gaps = 72/753 (9%)

Query: 86   KIFAFLESPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            +IF  + S N  F++N MM  Y +    +++I L+K M    +  ++YT+  + +  A  
Sbjct: 507  RIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATL 566

Query: 145  LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
              V E K IH  V K GF S   V N+LI  Y   G++ +A KLFDE    D+VSWNS++
Sbjct: 567  GRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMI 626

Query: 205  AGYV-----------------------------------NADNVEEAKFIYNKMPE---- 225
            +G V                                   N  ++   + ++ +  +    
Sbjct: 627  SGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS 686

Query: 226  RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            R ++ +N+++ ++ + GN+ +A + F++M +K +VSW++LI+ Y +  +Y++A+ LF  M
Sbjct: 687  REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 286  IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                V  D   + SVL ACA    +  G  VH    K  +   + + NAL+ MY+     
Sbjct: 747  ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYA----- 801

Query: 346  TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                      KCGS+E+A  +F  +  KD+VSW+TMI GY+++ 
Sbjct: 802  --------------------------KCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNS 835

Query: 406  QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              +E L LF EMQ    RPD  T+  ++ AC  L AL+ G+ IH  I +NG      +  
Sbjct: 836  LPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN 894

Query: 466  TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
             LIDMY+K G + +A  +F    EK + +W  +I G  M+GL ++++  F +M+ +G+ P
Sbjct: 895  ALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKP 954

Query: 526  NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
            +EITF  +L AC H GL++EG   FNSMI E  +EP  +HY CMVDLL R G L +A  L
Sbjct: 955  DEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNL 1014

Query: 586  IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
            IE+MP+ PD   WGALL  C+ H D E+ E+V   + EL+PD+ G++VLL+NI+A   +W
Sbjct: 1015 IETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKW 1074

Query: 646  DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            ++V ++R  + +RG+ K PGCS IE  G    F++ D  HPQ   I ++L+ +  K+K E
Sbjct: 1075 EEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNE 1134

Query: 706  GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            G++P       +    EKE  L  HSEKLA+AFG++ +     IR+ KNLR+C+DCH  A
Sbjct: 1135 GHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMA 1194

Query: 766  KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KF+S+   REI++RD +RFHHFK G CSC DFW
Sbjct: 1195 KFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 252/557 (45%), Gaps = 76/557 (13%)

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
           L ++    +D   Y  + Q  A    + EGK++H  +   G   +  +   L+ MY  CG
Sbjct: 441 LRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG 500

Query: 181 DLSAARKLFDESPVLDLVS-WNSILAGYVNADNVEEAKFIYNKMPERNIIAS-------- 231
            L   R++FD     + V  WN +++ Y    +  E+ +++ KM +  I  +        
Sbjct: 501 ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL 560

Query: 232 -------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                          NS+I  + + G V  A +LF E+  +D+V
Sbjct: 561 KCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVV 620

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++IS    N     AL  F+ M+  RV VD   +V+ ++ACAN+  +  G ++H   
Sbjct: 621 SWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQG 680

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           VK      +   N L+ MYS                               KCG++  A 
Sbjct: 681 VKACFSREVMFNNTLLDMYS-------------------------------KCGNLNDAI 709

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
             F+ M +K VVSW+++I+ Y +   + + + LF EM+  G+ PD  ++ SV+ AC    
Sbjct: 710 QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +LD+G+ +H YIRKN + +   +   L+DMY K G ++ A  VF     K + SWN +I 
Sbjct: 770 SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G++ N L +++L++F+EM+K    P+ IT   +L AC  +  ++ G R  +  I  +   
Sbjct: 830 GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG-RGIHGCILRNGYS 887

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH--GDHEMGERVG 618
                   ++D+  + G L  A  L + +P   D+ TW  ++  C  H  G+  +     
Sbjct: 888 SELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMHGLGNEAIATFQK 946

Query: 619 RKLVELQPDHDGFHVLL 635
            ++  ++PD   F  +L
Sbjct: 947 MRIAGIKPDEITFTSIL 963



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 212/463 (45%), Gaps = 73/463 (15%)

Query: 80   EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            E+  + K+F  L   +   +N+M+   +       A+  +  ML   VGVD  T      
Sbjct: 603  EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662

Query: 140  ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
            A A   S+  G+ +H   +KA F  +V  NNTL++MY+ CG+L+ A + F++     +VS
Sbjct: 663  ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 200  WNSILAGYVN-----------------------------------ADNVEEAKFIYNKMP 224
            W S++A YV                                     +++++ + ++N + 
Sbjct: 723  WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782

Query: 225  ERNII----ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
            + N+      SN+++ ++ + G++ EA  +F ++P KD+VSW+ +I  Y +N +  EAL 
Sbjct: 783  KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALK 842

Query: 281  LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
            LF  M       D + +  +L AC +L  ++ G  +H   ++ G    +++ NALI MY 
Sbjct: 843  LFAEM-QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYV 901

Query: 341  SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             CG +  A  LFD     DLI+W  MISG   CG                          
Sbjct: 902  KCGSLVHARLLFDMIPEKDLITWTVMISG---CG-------------------------- 932

Query: 401  YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKI 459
               H   +E ++ F +M+  GI+PDE T  S++ AC+H   L++G  + ++ I +  ++ 
Sbjct: 933  --MHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEP 990

Query: 460  NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIG 501
                   ++D+  + G +  A  +      K  ++ W AL+ G
Sbjct: 991  KLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCG 1033



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 198/446 (44%), Gaps = 54/446 (12%)

Query: 66   SRLIKFSTDLLPFIE----MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKL 121
            SR + F+  LL        ++ + + F  +       + +++ AY++  +   AI L+  
Sbjct: 686  SREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYE 745

Query: 122  MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
            M +  V  D Y+   +  A A   S+ +G+ +H+++ K      + V+N L++MYA CG 
Sbjct: 746  MESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGS 805

Query: 182  LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE---------------- 225
            +  A  +F + PV D+VSWN+++ GY       EA  ++ +M +                
Sbjct: 806  MEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPAC 865

Query: 226  -----------------RNIIAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                             RN  +S     N++I ++ + G++  A  LF  +P+KDL++W+
Sbjct: 866  GSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWT 925

Query: 264  ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVK 322
             +IS    + +  EA+  F  M    +  DE+   S+L AC++  ++  G    +++  +
Sbjct: 926  VMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISE 985

Query: 323  IGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARA 381
              +E  +     ++ + +  G ++ A  L +      D   W +++ G      VE A  
Sbjct: 986  CNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEK 1045

Query: 382  LFDAM--IEKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACT 437
            + + +  +E D   +  +++  YA+ +++ E   L   +   G++     + + V    T
Sbjct: 1046 VAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFT 1105

Query: 438  HLVALD----QGKWIHAYIRKNGLKI 459
              V+ D    Q K I + +  N L+I
Sbjct: 1106 TFVSADTAHPQAKSIFSLL--NNLRI 1129


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/653 (37%), Positives = 372/653 (56%), Gaps = 35/653 (5%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H  V+K G  S V V N+++ MY  CGD                            
Sbjct: 182 GRKVHSFVIKLGLSSCVPVANSVLYMYGKCGD---------------------------- 213

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
               E A+ ++ +M  R+  + N+M+ L+  +G +  A  +F+ M ++ +VSW+A+I+ Y
Sbjct: 214 ---AETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGY 270

Query: 270 EQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN + + AL  F  M+    M  DE  V SVLSACANL ++K G  +H+  ++ G+   
Sbjct: 271 NQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYS 330

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAG--HNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + NALI  Y+  G + TA ++ D     +L++IS+ +++ GY+K G  ++AR +FD M
Sbjct: 331 SQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVM 390

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +DV++W+ MI GY Q+ Q  E + LF  M   G  P+  TL +V+SAC  L  L  GK
Sbjct: 391 NNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGK 450

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALIIGFAMN 505
            IH    ++  + +  +   +I +Y + G V  A  VF      K   +W ++I+  A +
Sbjct: 451 QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL ++++ +F EM + GV P+ +T++GV  AC H G +D+G R++  M+ EH + P   H
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL RAG+L EA E I+ MP++PD   WG+LL AC+   + ++ E    KL+ + 
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSID 630

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           PD+ G +  L+N++++ GRW+D   +  +   + V K  G S       +H F A D  H
Sbjct: 631 PDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLH 690

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ + I     EM +++K  G+ PD   V  D+D E KE  L RHSEKLAIAFGLI+   
Sbjct: 691 PQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 750

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +RIMKNLR+CNDCHTA KFIS+  DREI+VRD  RFHHF+ G CSC D+W
Sbjct: 751 KTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 250/524 (47%), Gaps = 77/524 (14%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD----LSAARKLF 189
           +  L Q S   ++   G+ IH H +KAG     Y+ N L++ YA  G        AR+LF
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           D+ P                                RN    NS++ ++ + G +A+A  
Sbjct: 88  DDIP-----------------------------YARRNAFTWNSLLSMYAKSGRLADARV 118

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F +MP++D VSW+ ++    +   + +A+  F++M+   +   + ++ +VLS+CA    
Sbjct: 119 VFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEA 178

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  VH+  +K+G+   + + N++++MY  CG+  TA  +F+        SWN+M+S 
Sbjct: 179 RGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSL 238

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEAT 428
           Y   G ++ A ++F+ M E+ +VSW+ +I+GY Q+      L  F  M     + PDE T
Sbjct: 239 YTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFT 298

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLK------------------------------ 458
           + SV+SAC +L  L  GK +H+YI + G+                               
Sbjct: 299 VTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAV 358

Query: 459 ---INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
              +N I  T L++ Y+KLG    A EVF     + V +W A+I+G+  NG  D+++E+F
Sbjct: 359 VADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELF 418

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSM--IQEHRLEPNSKHYGCMVDL 572
             M +SG  PN  T   VL AC  +  +  G + H  ++  +QE  +  ++     ++ +
Sbjct: 419 RSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSN----AIITV 474

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
             R+G +  A  + + +    +  TW +++ A  +HG   +GE+
Sbjct: 475 YARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG---LGEQ 515



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 136/305 (44%), Gaps = 31/305 (10%)

Query: 68  LIKFSTDLLPFIEMS---YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           +I F+  L  ++++     + ++F  + + +   +  M+  Y Q     +A+ L++ M+ 
Sbjct: 364 VISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIR 423

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           +    +++T   +  A A    +  GK IH   +++  +  V V+N +I +YA  G +  
Sbjct: 424 SGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPL 483

Query: 185 ARKLFDE-SPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVL 237
           AR++FD+     + V+W S++         E+A  ++ +M      P+R  +    +   
Sbjct: 484 ARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDR--VTYIGVFSA 541

Query: 238 FGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
               G + +  R +++M  +     ++  ++ ++    +  +  EA      M    V  
Sbjct: 542 CTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRM---PVAP 598

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN-----ALIHMYSSCGEITT 347
           D VV  S+L+AC     V+    +  LA +  +   I+  N     AL ++YS+CG    
Sbjct: 599 DTVVWGSLLAACR----VRKNADLAELAAEKLLS--IDPDNSGAYSALANVYSACGRWND 652

Query: 348 AEKLF 352
           A +++
Sbjct: 653 AARIW 657


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/599 (40%), Positives = 379/599 (63%), Gaps = 13/599 (2%)

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVL-------FGRKGNVAEACRLFKEMPKKDLVS 261
           N+ +V+E   I+  +   N++      VL       +   G +  +  LF +    DL  
Sbjct: 36  NSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFL 95

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           ++A I+    N + ++A +L++ ++  ++  +E    S+L +C+     K+G  +H   +
Sbjct: 96  FTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVL 151

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K G+     +   L+ +Y+  G++ +A+K+FD      L+S  +MI+ Y K G+VE ARA
Sbjct: 152 KFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARA 211

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLV 440
           LFD M E+D+VSW+ MI GY+QH   S+ L LF ++   G  +PDE T+V+ +SAC+ + 
Sbjct: 212 LFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIG 271

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL+ G+WIH ++  + +++N  + T LIDMY K G ++ A+ VF+ T  K + +WNA+I 
Sbjct: 272 ALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIT 331

Query: 501 GFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
           G+AM+G +  +L +F EM+  +G+ P +ITF+G L AC H GLV+EG + F SM QE+ +
Sbjct: 332 GYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           +P  +HYGC+V LLGRAG LK A E+I++M M  D   W ++LG+CK HG+  +G+ +  
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAE 451

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
            L+     + G +VLLSNI+A  G ++ V +VR +M  +G+VK PG S IE +  +HEF 
Sbjct: 452 YLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFR 511

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
           AGDR H +  EI  ML +M++++K  GY P+T  V  D+++ EKE +L  HSE+LAIA+G
Sbjct: 512 AGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYG 571

Query: 740 LITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LI+  P +P++I KNLR+C+DCHT  K IS+   R+IV+RDR+RFHHF  GSCSC DFW
Sbjct: 572 LISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 192/398 (48%), Gaps = 49/398 (12%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++ +S  +F     P+ F+F   +       +  QA  LY  +L++ +  + +T+  + +
Sbjct: 77  KIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILK 136

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           + + +     GKLIH HVLK G   D YV   L+++YA  GD+ +A+K+FD  P   LVS
Sbjct: 137 SCSTK----SGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVS 192

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
             +++  Y    NVE A+ ++++M ER+I++ N MI  + + G  ++A  LF+++     
Sbjct: 193 STAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL----- 247

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
                                    + D +   DE+ VV+ LSAC+ +  ++ G  +H  
Sbjct: 248 -------------------------LADGKPKPDEITVVAALSACSQIGALETGRWIHVF 282

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
                I   + +  ALI MYS CG +  A  +F+     D+++WN+MI+GY   G  + A
Sbjct: 283 VNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDA 342

Query: 380 RALFDAM-----IEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPD---EATLV 430
             LFD M     ++   +++   +   A     +E + +F  M Q +GI+P       LV
Sbjct: 343 LRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLV 402

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           S++     L      K  +  I+   ++ +S+L ++++
Sbjct: 403 SLLGRAGQL------KRAYEIIKNMNMEADSVLWSSVL 434


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/714 (36%), Positives = 401/714 (56%), Gaps = 77/714 (10%)

Query: 131 NYTYPLLAQASALRLSVFEG-------KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           N + P+ ++A  ++  +  G       K IH  +L+   D D Y+ N ++      G  +
Sbjct: 6   NPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------------------- 224
            ++ +F +    ++  WN+++ G V+ D  ++A  +Y  M                    
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 225 --------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                               + ++    S++ L+ +  N  +A ++F ++P K++VSW+A
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+ Y  +  + EA+  F  +++  +  D   +V VL+ACA L    +G           
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGE---------W 236

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           I+ YI+                      D+G   ++    S++  Y+KCG++E+A  +F 
Sbjct: 237 IDRYIS----------------------DSGMGRNVFVATSLLDMYVKCGNLERANLIFS 274

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
           AM EKD+VSWSTMI GYA +    + L LF +MQ   ++PD  T+V V+SAC  L ALD 
Sbjct: 275 AMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDL 334

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G W  + + +N    N +LGT LIDMY K G V  A E+F   ++K    WNA+++G +M
Sbjct: 335 GIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSM 394

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           NG A     +FS ++K G+ P+E TF+G+L  C H G V+EG + FN+M +   L P+ +
Sbjct: 395 NGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIE 454

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG+L EA +LI +MPM P+   WGALLG CK H D  + E+V +KL+EL
Sbjct: 455 HYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL 514

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P + G +V LSNI++   RW++  ++R  M  + + KI  CS IE +GI+HEFL GD++
Sbjct: 515 EPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKS 574

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           H    +I   LDE+ ++LK  G+ P T  V FDI++EEKE  L  HSEKLA+AFGLI   
Sbjct: 575 HWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASP 634

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P + IR++KNLR+C DCH A K IS+   REI++RD +RFH F  GSCSC D+W
Sbjct: 635 PNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 166/630 (26%), Positives = 283/630 (44%), Gaps = 118/630 (18%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F Q   I ++++   L  D +  + ++  + D   F   +YS  +F+ ++ PN F++NTM
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALD---FGSTNYSKLVFSQVKEPNIFLWNTM 85

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +R  + ++    AI LY  M       +N+T P + +A A +L V  G  IH  ++KAG+
Sbjct: 86  IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY 145

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D DV+V  +L+++Y  C +   A K+FD+ P  ++VSW +I+ GY+++ +  EA   + K
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 223 MPE---------------------------------------RNIIASNSMIVLFGRKGN 243
           + E                                       RN+  + S++ ++ + GN
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A  +F  MP+KD+VSWS +I  Y  N + ++AL LF  M    +  D   +V VLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA L  +  G    +L  +        L  ALI MYS CG +T A ++F A    D + W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVW 385

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+M+ G    G    A+A+F                            SLF  ++ HGIR
Sbjct: 386 NAMMVGLSMNG---HAKAVF----------------------------SLFSLVEKHGIR 414

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PDE T + ++  CTH   +++G+        N  ++ S+  T  I+ Y   GC+ + L  
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGR----QFFNNMKRVFSL--TPSIEHY---GCMVDLL-- 463

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
                                 GL +++ ++ + M    + PN + +  +LG C+   L 
Sbjct: 464 -------------------GRAGLLNEAHQLINNMP---MKPNAVVWGALLGGCK---LH 498

Query: 544 DEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSP----DVATW 598
            + H     + +   LEP NS +Y  + ++       +EAE++  +M           +W
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 599 GALLGACKKH--GD--HEMGERVGRKLVEL 624
             + G   +   GD  H + E++  KL EL
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDEL 588


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/570 (43%), Positives = 370/570 (64%), Gaps = 18/570 (3%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEE--ALVLFMNMI-DHRVMVDEVVVVSVLSA 303
           A ++F +MP+++  SW+ +I  + +++  +   A+ LF  M+ D  +  +     SVL A
Sbjct: 71  AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKA 130

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF----------- 352
           CA    ++ G  +H LA+K G      + + L+ MY  CG +  A  LF           
Sbjct: 131 CAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVM 190

Query: 353 ---DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                  + +++ WN MI GY++ G  + AR LFD M ++ VVSW+TMISGY+Q+  F +
Sbjct: 191 MIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKD 250

Query: 410 TLSLFMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            + +F EM+    IRP+  TLVSV+ A + L +L+ G+W+H Y   +G++I+ +LG+ LI
Sbjct: 251 AVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALI 310

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K G ++ A+ VF     + V +W+A+I GFA++G A  +++ F +M+++GV P+++
Sbjct: 311 DMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 370

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
            ++ +L AC H GLV+EG R+F+ M+    LEP  +HYGCMVDLLGR G+L EAEE I +
Sbjct: 371 AYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILN 430

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+ PD   W ALLGAC+ H + EMG+RV   L+++ P   G +V LSN++AS+G W +V
Sbjct: 431 MPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEV 490

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            E+R  M    + K PGCS I+ +G++HEFL  D +HP+  EI++ML E++ KL+L GY 
Sbjct: 491 SEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYR 550

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           P T +V  ++++E+KE  L  HSEK+A AFGLI+ SP  PIRI+KNLRIC DCH++ K I
Sbjct: 551 PITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLI 610

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S+ + R+I VRDR RFHHF+ GSCSCMD+W
Sbjct: 611 SKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 212/447 (47%), Gaps = 81/447 (18%)

Query: 20  AKPIFKPTIN--LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF-STDLL 76
            + ++ P  N   S L   +  C++ +  +QI +  I +G I DT AA+ +++F +T  L
Sbjct: 4   TQTLYSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDL 63

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ--AICLY-KLMLNNNVGVDNYT 133
              ++ Y+ KIF  +   N F +NT++R + + +  +   AI L+ ++M +  +  + +T
Sbjct: 64  HHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFT 123

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           +P + +A A    + +GK IH   LK GF  D +V + L+ MY +CG +  A  LF ++ 
Sbjct: 124 FPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNI 183

Query: 194 VL--------------DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG 239
           +               ++V WN ++ GY+   + + A+ +++KM +R++++ N+MI  + 
Sbjct: 184 IEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYS 243

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G   +A  +F+EM K +                               +  + V +VS
Sbjct: 244 QNGFFKDAVEVFREMKKGE------------------------------DIRPNYVTLVS 273

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL A + L  ++ G  +H  A   GI     L +ALI MYS CG I  A  +F+     +
Sbjct: 274 VLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPREN 333

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +I+W                               S MI+G+A H Q  + +  F +M+ 
Sbjct: 334 VITW-------------------------------SAMINGFAIHGQAGDAIDCFCKMRQ 362

Query: 420 HGIRPDEATLVSVISACTHLVALDQGK 446
            G+RP +   +++++AC+H   +++G+
Sbjct: 363 AGVRPSDVAYINLLTACSHAGLVEEGR 389



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI------DMYMKLGCVDNA 480
           ++L   I+ C  +  L Q   IHA   K+G   +++    ++      D++ +   +D A
Sbjct: 17  SSLFPQINTCRTIRDLSQ---IHAVFIKSGQIRDTLAAAEILRFCATSDLHHRD--LDYA 71

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSL---EMFSE-MKKSGVTPNEITFVGVLGA 536
            ++F+   ++   SWN +I GF+ +   DK+L    +F E M    + PN  TF  VL A
Sbjct: 72  HKIFNQMPQRNCFSWNTIIRGFSESD-EDKALIAITLFCEMMSDEFIEPNRFTFPSVLKA 130

Query: 537 CRHMGLVDEGHR 548
           C   G + +G +
Sbjct: 131 CAKTGKIQQGKQ 142


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/712 (37%), Positives = 399/712 (56%), Gaps = 77/712 (10%)

Query: 133 TYPLLAQASALRLSVFEG-------KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           T P+ ++A  ++  +  G       K IH  +L+   D D Y+ N ++      G  + +
Sbjct: 8   TSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYS 67

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
           + +F +    ++  WN+++ G V+ D  ++A  +Y  M                      
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARK 127

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             + ++    S++ L+ +  N  +A ++F ++P K++VSW+A+I
Sbjct: 128 LDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAII 187

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           + Y  +  + EA+  F  +++  +  D   +V VL+ACA L    +G           I+
Sbjct: 188 TGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGE---------WID 238

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            YI+                      D+G   ++    S++  Y+KCG++E+A  +F AM
Sbjct: 239 RYIS----------------------DSGMGRNVFVATSLLDMYVKCGNLERANLIFSAM 276

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            EKD+VSWSTMI GYA +    + L LF +MQ   ++PD  T+V V+SAC  L ALD G 
Sbjct: 277 PEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI 336

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           W  + + +N    N +LGT LIDMY K G V  A E+F   + K    WNA+++G +MNG
Sbjct: 337 WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNG 396

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            A     +FS ++K G+ P+E TF+G+L  C H G V+EG + FN+M +   L P+ +HY
Sbjct: 397 HAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHY 456

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDLLGRAG+L EA +LI +MPM P+   WGALLG CK H D  + E+V +KL+EL+P
Sbjct: 457 GCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEP 516

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            + G +V LSNI++   RW++  ++R  M  + + KI  CS IE +GI+HEFL GD++H 
Sbjct: 517 WNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHW 576

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
              +I   LDE+ ++LK  G+ P T  V FDI++EEKE  L  HSEKLA+AFGLI   P 
Sbjct: 577 LSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPN 636

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + IR++KNLR+C DCH A K IS+   REI++RD +RFH F  GSCSC D+W
Sbjct: 637 HVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 166/630 (26%), Positives = 283/630 (44%), Gaps = 118/630 (18%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F Q   I ++++   L  D +  + ++  + D   F   +YS  +F+ ++ PN F++NTM
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALD---FGSTNYSKLVFSQVKEPNIFLWNTM 85

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +R  + ++    AI LY  M       +N+T P + +A A +L V  G  IH  ++KAG+
Sbjct: 86  IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY 145

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D DV+V  +L+++Y  C +   A K+FD+ P  ++VSW +I+ GY+++ +  EA   + K
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 223 MPE---------------------------------------RNIIASNSMIVLFGRKGN 243
           + E                                       RN+  + S++ ++ + GN
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A  +F  MP+KD+VSWS +I  Y  N + ++AL LF  M    +  D   +V VLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA L  +  G    +L  +        L  ALI MYS CG +T A ++F A    D + W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVW 385

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+M+ G    G    A+A+F                            SLF  ++ HGIR
Sbjct: 386 NAMMVGLSMNG---HAKAVF----------------------------SLFSLVEKHGIR 414

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PDE T + ++  CTH   +++G+        N  ++ S+  T  I+ Y   GC+ + L  
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGR----QFFNNMKRVFSL--TPSIEHY---GCMVDLL-- 463

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
                                 GL +++ ++ + M    + PN + +  +LG C+   L 
Sbjct: 464 -------------------GRAGLLNEAHQLINNMP---MKPNAVVWGALLGGCK---LH 498

Query: 544 DEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSP----DVATW 598
            + H     + +   LEP NS +Y  + ++       +EAE++  +M           +W
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 599 GALLGACKKH--GD--HEMGERVGRKLVEL 624
             + G   +   GD  H + E++  KL EL
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDEL 588


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/829 (34%), Positives = 441/829 (53%), Gaps = 86/829 (10%)

Query: 15  KSSVNAKPIFKPTINLSILETHLQK--CQSFKQFTQILSQMILTGLIADTFAASRLIKFS 72
           + + ++ P F   I  S+L++ ++   C + K       ++I  G   D FA + L+ F 
Sbjct: 33  QRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLH---CEIIKKGNCLDLFANNILLNF- 88

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132
              + +  +  + K+F  +   N   F T+++ Y Q     +AI L+  +      ++ +
Sbjct: 89  --YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPF 146

Query: 133 TYP----LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            +     LL  A   +L    G  +H  V K GFDSD +V   LI+ Y+VCG    AR++
Sbjct: 147 VFSTVLKLLVSAEWAKL----GFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQV 202

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIASN---------- 232
           FD     D+VSW  ++A YV  +  EE+  ++++M      P     AS           
Sbjct: 203 FDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVF 262

Query: 233 -----------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                   +I L+ + G+V +A ++F+EMPK D++ WS +I+ Y
Sbjct: 263 NVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARY 322

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            Q+E  EEA+ +F  M    V+ ++  + S+L ACA+L  ++ G  +H   VK+G++  +
Sbjct: 323 AQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNV 382

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            + NAL+ MY+                               KCG +E +  LF      
Sbjct: 383 FVSNALMDMYA-------------------------------KCGRMENSLQLFSESPNC 411

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
             VSW+T+I GY Q     + L LF +M    ++  E T  SV+ AC  + AL+ G  IH
Sbjct: 412 TDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIH 471

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           +   K     N+++G  LIDMY K G + +A  VF    E    SWNA+I G++++GL  
Sbjct: 472 SLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYG 531

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++L+ F  M ++   P+++TFVG+L AC + GL+D G  +F SM++E+ +EP ++HY CM
Sbjct: 532 EALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCM 591

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           V LLGR+G L +A +L+  +P  P V  W ALL AC  H D E+G    ++++E++P+ +
Sbjct: 592 VWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDE 651

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             HVLLSNI+A+  RW +V  +R  M R+G+ K PG S IE  G +H F  GD +HP   
Sbjct: 652 ATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTK 711

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
            I+ ML+ +  K + EGY PD   V  D++  +KE  L+ HSE+LA+A+GLI     +P+
Sbjct: 712 LINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPL 771

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           RI+KNLRIC DCH A K IS+   R+I++RD +RFHHF  G CSC D+W
Sbjct: 772 RIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 153/590 (25%), Positives = 263/590 (44%), Gaps = 84/590 (14%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            L+ PN    NT +    QR+   Q         +++   + Y Y  L Q+         
Sbjct: 9   LLQHPNHCKSNTALCIITQRSFLAQRTS------HSSPEFNTYIYGSLLQSCIRNGDCAT 62

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H  ++K G   D++ NN L+N Y     L  A KLFDE P  + VS+ +++ GY  
Sbjct: 63  GKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQ 122

Query: 210 ADNVEEAKFIYNKMP----ERNIIASNSMIVL-----FGRKGNVAEAC------------ 248
                EA  +++++     E N    ++++ L     + + G    AC            
Sbjct: 123 CLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFV 182

Query: 249 ------------------RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
                             ++F  +  KD+VSW+ +++CY +NE +EE+L LF  M     
Sbjct: 183 GTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF 242

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI--ECYINLQNALIHMYSSCGEITTA 348
             +     SVL AC  L V   G +VH  A K     E ++ ++  LI +Y   G++  A
Sbjct: 243 KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE--LIDLYIKSGDVDDA 300

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            ++F+     D+I W                               S MI+ YAQ +Q  
Sbjct: 301 LQVFEEMPKDDVIPW-------------------------------SFMIARYAQSEQSE 329

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E + +F  M+   + P++ TL S++ AC  LV L  G  IH ++ K GL +N  +   L+
Sbjct: 330 EAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALM 389

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K G ++N+L++F  +      SWN +I+G+   G  +K+L +F +M +  V   E+
Sbjct: 390 DMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEV 449

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+  VL AC  +  ++ G +  +S+  +   + N+     ++D+  + G +K+A  L+  
Sbjct: 450 TYSSVLRACAGIAALEPGSQ-IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFD 507

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ--PDHDGFHVLLS 636
           M    D  +W A++     HG +    +    ++E +  PD   F  +LS
Sbjct: 508 MLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILS 557


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 273/787 (34%), Positives = 424/787 (53%), Gaps = 83/787 (10%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           L++D F  + LI          E   + K+F  +   N   +N+++  + +    Q++  
Sbjct: 132 LVSDVFVGNALIAMYGKCGLVEE---AVKVFEHMPERNLVSWNSIICGFSENGFLQESFN 188

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-----GKLIHDHVLKAGFDSDVYVNNTL 172
            ++ ML   VG +++   +    + L +   E     G  +H   +K G + ++ VNN+L
Sbjct: 189 AFREML---VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSL 245

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV------------EEAKF-- 218
           I+MY+ C  LS A+ LFD++   ++VSWNS++ GY   ++V            E+AK   
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 219 ----IYNKMP-----------------------ERNIIASNSMIVLFGRKGNVAEACRLF 251
               I N +P                       + N + +N+ I  + R G +  + R+F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             M  K + SW+AL+  Y QN    +AL L++ M D  +  D   + S+L AC+ +  + 
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLH 425

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H  A++ G+                                +D     S++S Y+
Sbjct: 426 YGEEIHGFALRNGLA-------------------------------VDPFIGISLLSLYI 454

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
            CG    A+ LFD M  + +VSW+ MI+GY+Q+    E ++LF +M   GI+P E  ++ 
Sbjct: 455 CCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMC 514

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V  AC+ L AL  GK +H +  K  L  +  + +++IDMY K GC+  +  +F    EK 
Sbjct: 515 VCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD 574

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V+SWN +I G+ ++G   ++LE+F +M + G+ P++ TF G+L AC H GLV++G  +FN
Sbjct: 575 VASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFN 634

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
            M+  H +EP  +HY C+VD+LGRAG + +A  LIE MP  PD   W +LL +C+ HG+ 
Sbjct: 635 QMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNL 694

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
            +GE+V  KL+EL+P+    +VL+SN+ A  G+WDDV  VRG M   G+ K  GCS IE 
Sbjct: 695 GLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
            G +H FL GD   P++ E+      +  K+   GY PDT  V  D+++E+K   L  HS
Sbjct: 755 GGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHS 814

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           EKLAI+FGL+  +   P+R+ KNLRIC DCH AAKFIS+  +R+IVVRD  RFHHF+ G 
Sbjct: 815 EKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGI 874

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 875 CSCGDYW 881



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 156/622 (25%), Positives = 292/622 (46%), Gaps = 82/622 (13%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQA 140
           S S  +F  L   N F +N ++ AY +  + + A+ ++  +++      DN+T P + +A
Sbjct: 51  SDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKA 110

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A  L +  G++IH    K    SDV+V N LI MY  CG +  A K+F+  P  +LVSW
Sbjct: 111 CAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSW 170

Query: 201 NSILAGYVNADNVEEAKFIYNKM--------PE--------------------------- 225
           NSI+ G+     ++E+   + +M        P+                           
Sbjct: 171 NSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLA 230

Query: 226 ------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                   ++ +NS+I ++ +   ++EA  LF +  KK++VSW+++I  Y + E      
Sbjct: 231 VKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTF 290

Query: 280 VLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
            L   M   D ++  DE  +++VL  C   + +++   +H  + + G++    + NA I 
Sbjct: 291 YLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIA 350

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            Y+ CG + ++E++FD      + SWN++                               
Sbjct: 351 AYTRCGALCSSERVFDLMDTKTVSSWNAL------------------------------- 379

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           + GYAQ+    + L L+++M   G+ PD  T+ S++ AC+ + +L  G+ IH +  +NGL
Sbjct: 380 LCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL 439

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
            ++  +G +L+ +Y+  G    A  +F G E + + SWN +I G++ NGL D+++ +F +
Sbjct: 440 AVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQ 499

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M   G+ P EI  + V GAC  +  +  G       ++ H L  +      ++D+  + G
Sbjct: 500 MLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGG 558

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGF-HVL 634
            +  ++ + + +    DVA+W  ++     HG  +    +  K++   L+PD   F  +L
Sbjct: 559 CIGLSQRIFDRL-REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 617

Query: 635 LSNIHASKGRWDDVLEVRGMMV 656
           ++  HA  G  +D LE    M+
Sbjct: 618 MACSHA--GLVEDGLEYFNQML 637



 Score =  196 bits (498), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 220/450 (48%), Gaps = 76/450 (16%)

Query: 136 LLAQASALRLSVFEGKLIHDHV-LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           +L QA   R  +  G+ +H+ V     F +D  +N  +I MY++CG  S +R +FD+   
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM-------PER--------------------- 226
            +L  WN+I++ Y   +  E+A  I++++       P+                      
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 227 ------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   N++I ++G+ G V EA ++F+ MP+++LVSW+++I  + +N  
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 275 YEEALVLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            +E+   F  M+  +   + D   +V+VL  CA    ++ G +VH LAVK+G+       
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL------- 235

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
                                   N +L+  NS+I  Y KC  + +A+ LFD   +K++V
Sbjct: 236 ------------------------NEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIV 271

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHLVALDQGKWIHA 450
           SW++MI GYA+ +    T  L  +MQ     ++ DE T+++V+  C     L   K +H 
Sbjct: 272 SWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG 331

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y  ++GL+ N ++    I  Y + G + ++  VF   + K VSSWNAL+ G+A N    K
Sbjct: 332 YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRK 391

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           +L+++ +M  SG+ P+  T   +L AC  M
Sbjct: 392 ALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/716 (37%), Positives = 405/716 (56%), Gaps = 83/716 (11%)

Query: 5   TKLAHLS--STIKSSVNAKPIF-KPTIN---LSILETH-------LQKCQSFKQFTQILS 51
           TKLAH S  +  KS V     F KP  +    S L+T+       L+ C+S  Q  QI S
Sbjct: 59  TKLAHASFINHSKSPVYIPSFFFKPPFSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQS 118

Query: 52  QMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
           Q+   GL  D    ++L+ F  D      + Y+ KIF +++ P+ F++N M++ Y +R +
Sbjct: 119 QIFRIGLEGDRDTINKLMAFCADS-SLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGI 177

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
            ++ + L++ +  + +  D +TYP + +A      V +G+ +   ++K G D        
Sbjct: 178 LRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD-------- 229

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
                                  LD   +NS++  Y    NVE AK              
Sbjct: 230 -----------------------LDNYVYNSLIDMYYELSNVENAK-------------- 252

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRV 290
                            +LF EM  +D VSW+ +IS Y +   +E+A+  F  M  +   
Sbjct: 253 -----------------KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNE 295

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTAE 349
             DE  VVS LSAC  L  ++ G  +H    K +G    I+  NAL+ MY+ CG +  A 
Sbjct: 296 KPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID--NALLDMYAKCGCLNIAR 353

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD     ++I W SMISGY+ CG + +AR LFD    +DVV W+ MI+GY Q   F +
Sbjct: 354 NIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDD 413

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            ++LF EMQ   I+PD+ T+V++++ C  L AL+QGKWIH Y+ +N + ++ ++GT LI+
Sbjct: 414 AVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIE 473

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K GCVD +LE+F+  E+K  +SW ++I G AMNG   ++L +FSEM++ G  P++IT
Sbjct: 474 MYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDIT 533

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+GVL AC H GLV+EG R FNSM + HR+EP  +HYGC++DLLGRAG+L EAEELI+ +
Sbjct: 534 FIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEI 593

Query: 590 PMSPD---VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           P+      V  +GALL AC+ H + +MGER+ +KL  ++      H LL+NI+AS  RW+
Sbjct: 594 PIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWE 653

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           D  +VR  M   GV K+PGCS+IE +GI+HEFL GD +HP++ EI +ML+ +  +L
Sbjct: 654 DAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTGQL 709


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/654 (37%), Positives = 396/654 (60%), Gaps = 16/654 (2%)

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL----DLVSWNSILAGYVNADNVEE 215
           A   ++VY+ N++I      G  S A  L+ E+  +    D  ++ S++       + E 
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 216 AKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
           AK I++++ +     ++   N++I ++ R  ++ +A ++F+EMP +D+VSW++LIS Y  
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 272 N-------EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           N       E+Y +++ LFM M++ +   D + + S+L AC +L  ++ G  VH   +  G
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            EC     N LI+MY+ CG +  ++++F      D +SWNSMI+ Y++ G +  +  +F+
Sbjct: 253 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFE 312

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  +D+++W+T+I+     +  +  L +   M+  G+ PD AT++S++  C+ L A  Q
Sbjct: 313 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 372

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK IH  I K GL+ +  +G  LI+MY K G + N+ +VF   + K V +W ALI    M
Sbjct: 373 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 432

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G   K++  F EM+ +G+ P+ + FV ++ AC H GLV+EG  +F+ M +++++EP  +
Sbjct: 433 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 492

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY C+VDLL R+ +L +AE+ I SMP+ PD + WGALL AC+  GD E+ ERV  +++EL
Sbjct: 493 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIEL 552

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            PD  G++VL+SNI+A+ G+WD V  +R  +  RG+ K PGCS +E    ++ F  G + 
Sbjct: 553 NPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKF 612

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
             Q  E++ +L  +A  +  EGY  +   V  DID++EK   L  HSE+LAIAFGL+   
Sbjct: 613 FEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTK 672

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P  P+++MKNLR+C DCHT  K+IS+   RE++VRD +RFH FK G+CSC D+W
Sbjct: 673 PGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 238/558 (42%), Gaps = 117/558 (20%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
            S +   L    +  Q  ++ S +I  GL      +++LI        F + + SF +F 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLI---AKYAHFRDPTSSFSVFR 72

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
            L SP  N +++N+++RA     +  +A+ LY       +  D YT+P +  A A  L  
Sbjct: 73  -LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDF 131

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
              K IHD VL  GF SD+Y+ N LI+MY    DL  ARK+F+E P+ D+VSWNS+++GY
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191

Query: 208 VNAD------------------------------------------NVEEAKFIYNKM-- 223
            NA+                                          ++E  K++++ M  
Sbjct: 192 -NANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 250

Query: 224 --PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
              E +  ASN +I ++ + GN+  +  +F  M  KD VSW+++I+ Y QN    ++L +
Sbjct: 251 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310

Query: 282 FMNMIDHRVMV-------------------------------DEVVVVSVLSACANLTVV 310
           F NM    ++                                D   ++S+L  C+ L   
Sbjct: 311 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 370

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           + G  +H    K+G+E  + + N LI MYS CG +  + ++F      D+++W ++IS  
Sbjct: 371 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISA- 429

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
             CG                             + +  + +  F EM+  GI PD    V
Sbjct: 430 --CG----------------------------MYGEGKKAVRAFGEMEAAGIVPDHVAFV 459

Query: 431 SVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           ++I AC+H   +++G  + H   +   ++        ++D+  +   +D A +       
Sbjct: 460 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPL 519

Query: 490 KGVSS-WNALIIGFAMNG 506
           K  SS W AL+    M+G
Sbjct: 520 KPDSSIWGALLSACRMSG 537


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/798 (32%), Positives = 421/798 (52%), Gaps = 73/798 (9%)

Query: 40  CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF 99
           C +     Q+ +Q    GL+ D F  S L+          E+  + K+F  +   N   +
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG---EIELASKMFIGMPEQNDVTW 282

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N ++  Y QR      + L+  M+  +V  + +T   + +  A   ++ +G++IH  ++K
Sbjct: 283 NVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK 342

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN------------------ 201
            G++ + ++   L++MY+ CG    A  +F      D+V W+                  
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKL 402

Query: 202 -----------------SILAGYVNADNVEEAKFI----YNKMPERNIIASNSMIVLFGR 240
                            S+L+   N  N++  + I    +    E ++  SN+++ ++ +
Sbjct: 403 FHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK 462

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G V +  +L++ M  +DL+SW+A +S      MY+  L +F +M++   + +    +S+
Sbjct: 463 NGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L +C+ L  V  G  VHA  +K  ++    +  ALI MY+                    
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYA-------------------- 562

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KC  +E A   F+ +  +D+ +W+ +I+ YAQ +Q  + L+ F +MQ  
Sbjct: 563 -----------KCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQE 611

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G++P+E TL   +S C+ L +L+ G+ +H+ + K+G   +  +G+ L+DMY K GC++ A
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             +F     +   +WN +I G+A NG  +K+L  F  M   G++P+ +TF G+L AC H 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG  HFNSM ++  + P   H  CMVD+LGR G   E E+ I+ M +S +   W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           +LGA K H +  +GE+   KL ELQP+ +  ++LLSNI A++GRWDDV  VR +M  +GV
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K PGCS +EANG +H F++ D +HPQI EI   LDE+ ++L    Y P T  V  ++ +
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
            EK+  L  HSE+LA+ F LI+ S    IRI KNLRIC DCH   K IS   ++EIVVRD
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRD 971

Query: 781 RHRFHHFKHGSCSCMDFW 798
             RFHHFK+G+CSC DFW
Sbjct: 972 VRRFHHFKNGACSCNDFW 989



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 151/596 (25%), Positives = 272/596 (45%), Gaps = 74/596 (12%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           +Y+  + A +   +   +  +++  +       +I L++ M N  +  + +T     +A 
Sbjct: 164 AYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKAC 223

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +L +++  GK +H    K G   D++V + L+++YA CG++  A K+F   P  + V+WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIAS-----------------------NSMIVLF 238
            +L GY    +V     ++  M E ++  +                       +S+I+  
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 239 GRKGNVAEACRL----------------FKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           G +GN    C L                FK + K D+V WSALI+C +Q    EE++ LF
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M     + ++  + S+LSA  N   ++ G S+HA   K G E  + + NAL+ MY   
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +    KL+++  + DLISWN+ +SG   CG                            
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCG---------------------------- 495

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
               +   L++F  M   G  P+  T +S++ +C+ L  +  G+ +HA+I KN L  N+ 
Sbjct: 496 ---MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + T LIDMY K   +++A   F+    + + +W  +I  +A     +K+L  F +M++ G
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V PNE T  G L  C  +  + EG +  +SM+ +     +      +VD+  + G ++EA
Sbjct: 613 VKPNEFTLAGCLSGCSSLASL-EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           E L E++ +  D   W  ++    ++G         R +++  + PD   F  +LS
Sbjct: 672 EALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/533 (23%), Positives = 240/533 (45%), Gaps = 75/533 (14%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  + +  A + S+   K IH  ++K   + D ++  +L+N+YA C   + AR +  + P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS---------------------- 231
             D+VSW +++ G V      ++ +++ +M    I+ +                      
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 232 -----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                            ++++ L+ + G +  A ++F  MP+++ V+W+ L++ Y Q   
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
               L LF +M++  V  +E  + +VL  CAN   +K G  +H+L +K G E    +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MYS CG    A  +F      D++ W                               
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVW------------------------------- 383

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S +I+   Q  Q  E++ LF  M+     P++ T+ S++SA T+   L  G+ IHA + K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G + +  +   L+ MYMK GCV +  +++    ++ + SWNA + G    G+ D+ L +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M + G  PN  TF+ +LG+C  +  V  G R  ++ I +++L+ N+     ++D+  
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-RQVHAHIIKNQLDDNNFVCTALIDMYA 562

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           +   L++A+     + +  D+ TW  ++     +     GE+      ++Q +
Sbjct: 563 KCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQE 611


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 279/804 (34%), Positives = 416/804 (51%), Gaps = 77/804 (9%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T + +  +  Q  Q  +Q+IL GL  D    ++L    + L    + S    +F+ + +P
Sbjct: 15  TLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASL---LFSTIPNP 71

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           + F++N ++RA+   N P  A+ LY  L  +  +  DN+TY  +   ++           
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
               + AGF SD++V + ++  Y     ++AARK+FD     D V WN++++G V     
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 214 EEAKFIYNKMPERNIIASNSMIV------------------------------------- 236
           +EA  I+  M +  I   ++ +                                      
Sbjct: 189 DEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGL 248

Query: 237 --LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
             L+ + G +  A  LF ++ + DLVS++A+IS Y  N   E ++ LF  ++     V+ 
Sbjct: 249 ACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNS 308

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             +V ++        +     +H    K G+    ++  AL  +YS   EI         
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEI--------- 359

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                                 E AR LFD   EK + SW+ MISGYAQ+    + +SLF
Sbjct: 360 ----------------------ESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLF 397

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            EMQ   +RP+  T+ S++SAC  L AL  GKW+H  I +   + N  + T LIDMY K 
Sbjct: 398 QEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKC 457

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A  +F    EK   +WNA+I G+ ++G   ++L +F+EM  S V+P  +TF+ VL
Sbjct: 458 GSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVL 517

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLV EG   F SM+ +H  EP  +HY CMVDLLGRAG L +A + I  MP+ P 
Sbjct: 518 YACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPG 577

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
              WGALLGAC  H D  +      KL EL P + G++VLLSNI+++   + +   VRG+
Sbjct: 578 PPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGV 637

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           + RR + K PGC++IE    +H F +GD++HPQ   I  ML+++  K++  G+  +T   
Sbjct: 638 VKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTA 697

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+++EEKE  +  HSEKLAIAFGLIT  P   IRI+KNLR+C DCH A KFIS+  +R
Sbjct: 698 LHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITER 757

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
            IVVRD +RFHHFK G CSC D+W
Sbjct: 758 VIVVRDANRFHHFKDGICSCGDYW 781



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 7/214 (3%)

Query: 324 GIECYINLQNALIHMYSSCGEI--TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           GI    NL   LI+  S+  ++  T A+ + +  HN DL++   +        ++++A  
Sbjct: 5   GIASTRNLFLTLINRVSTLHQLNQTHAQIILNGLHN-DLVTVTKLTHKLSHLKAIDQASL 63

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLV 440
           LF  +   D+  ++ +I  ++ ++  S  +SL+  ++    + PD  T   VIS  + L 
Sbjct: 64  LFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLG 123

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
                          G   +  +G+ ++  Y K   V  A +VF G  E+    WN ++ 
Sbjct: 124 LGLLLHAHSIVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G   N   D+++ +F +M K G+  +  T   VL
Sbjct: 181 GLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVL 214


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/560 (43%), Positives = 362/560 (64%), Gaps = 40/560 (7%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           NS+I L+    ++  A +LF     +D+VSW+A+I  Y          V    M   R++
Sbjct: 39  NSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGY----------VKRGEMGHTRMV 88

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D +V   V+S                              N +I+ Y+  G+I  A++L
Sbjct: 89  FDRMVCRDVIS-----------------------------WNTIINGYAIVGKIDEAKRL 119

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     +L+SWNSM+SG++KCG+VE+A  LF  M  +DVVSW++M++ YAQ  + +E L
Sbjct: 120 FDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL 179

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           +LF +M+  G++P EAT+VS++SAC HL ALD+G  +H YI  N +++NSI+GT L+DMY
Sbjct: 180 ALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMY 239

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A +VF+  E K V +WN +I G A++G   ++ ++F EMK++ V PN+ITFV
Sbjct: 240 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFV 299

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L AC H G+VDEG +  + M   + +EP  +HY C++DLL RAG+L+EA ELI +MPM
Sbjct: 300 AMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPM 359

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+ +  GALLG C+ HG+ E+GE VG++L+ LQP H G ++LLSNI+A+  +WDD  +V
Sbjct: 360 EPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 419

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPD 710
           R +M   G+ K+PG S+IE  G++H F+AGD +HP+ N+I + L+E+  +LK   GY+ D
Sbjct: 420 RNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSAD 479

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  D+++E+KE  L  HSEKLAIA+GL+ +     IRI+KNLR+C DCH   K IS+
Sbjct: 480 TGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISK 539

Query: 771 AFDREIVVRDRHRFHHFKHG 790
            + REI+VRDR+RFHHF+ G
Sbjct: 540 VYGREIIVRDRNRFHHFEDG 559



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 216/440 (49%), Gaps = 95/440 (21%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF--- 189
           TYP + +A       + G L+H HV+K+GF+ D Y+ N+LI++YA   DL AA++LF   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 190 ----------------------------DESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
                                       D     D++SWN+I+ GY     ++EAK +++
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           +MPERN+++ NSM+  F + GNV EA  LF EMP +D+VSW+++++CY Q     EAL L
Sbjct: 122 EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M    V   E  VVS+LSACA+L  +  G  +H       IE    +  AL+ MY+ 
Sbjct: 182 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG+I+ A ++F+A  + D+++WN++I+G    G V++A+                     
Sbjct: 242 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQ--------------------- 280

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
                      LF EM+   + P++ T V+++SAC+H   +D+G+ +             
Sbjct: 281 ----------QLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKL------------- 317

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
                       L C+ ++    +G E K V  ++ +I   A  GL ++++E+   M   
Sbjct: 318 ------------LDCMSSS----YGIEPK-VEHYDCVIDLLARAGLLEEAMELIGTMP-- 358

Query: 522 GVTPNEITFVGVLGACRHMG 541
            + PN      +LG CR  G
Sbjct: 359 -MEPNPSALGALLGGCRIHG 377



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 22/266 (8%)

Query: 40  CQSFKQFTQILSQMILTGLIA------DTFAASRLIKFSTDLLPFIE---MSYSFKIFAF 90
           C+    +  I++   + G I       D      L+ +++ L  F++   +  +F +F+ 
Sbjct: 94  CRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSE 153

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           +   +   +N+M+  Y Q   P +A+ L+  M    V     T   L  A A   ++ +G
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 213

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
             +H ++     + +  V   L++MYA CG +S A ++F+     D+++WN+I+AG    
Sbjct: 214 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 273

Query: 211 DNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM-------PKKDL 259
            +V+EA+ ++ +M E ++  ++    +M+      G V E  +L   M       PK + 
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVE- 332

Query: 260 VSWSALISCYEQNEMYEEALVLFMNM 285
             +  +I    +  + EEA+ L   M
Sbjct: 333 -HYDCVIDLLARAGLLEEAMELIGTM 357



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           VI AC        G  +H ++ K+G + +S +  +LI +Y     +  A ++F    ++ 
Sbjct: 6   VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V SWNA+I G+   G    +  +F  M    V  + I++  ++     +G +DE  R F+
Sbjct: 66  VVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
            M + + +  NS     M+    + G ++EA  L   MP   DV +W ++L AC
Sbjct: 122 EMPERNLVSWNS-----MLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSML-AC 168


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/773 (36%), Positives = 415/773 (53%), Gaps = 85/773 (10%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA--ICLYKLMLNNNVGVDNYTYPLL 137
            +S +  +F  + SP+   +N ++RAY   +    A  + LY+ ML + V  +NYT+P  
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +A +       G+ IH H + AG  +D++V+  L++MY  C  L  A  +F   P  DL
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 198 VSWNSILAGYVNADNVEEA--KFIYNKM-------------------------------- 223
           V+WN++LAGY +      A    +  +M                                
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 224 ---------PERN--------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                    P RN        ++   +++ ++ + G++  A R+F  MP ++ V+WSALI
Sbjct: 252 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 267 SCYEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
             +       +A +LF  M+   +  +    + S L ACA+L  ++ G  +HAL  K G+
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
                                          + DL + NS++S Y K G +++A ALFD 
Sbjct: 372 -------------------------------HADLTAGNSLLSMYAKAGLIDQAIALFDE 400

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  KD VS+S ++SGY Q+ +  E   +F +MQ   + PD AT+VS+I AC+HL AL  G
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           +  H  +   GL   + +   LIDMY K G +D + +VF+    + + SWN +I G+ ++
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL  ++  +F EM   G  P+ +TF+ +L AC H GLV EG   F+ M   + L P  +H
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 580

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL R G L EA E I+SMP+  DV  W ALLGAC+ + + ++G++V R + EL 
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+  G  VLLSNI+++ GR+D+  EVR +   +G  K PGCS IE NG +H F+ GD++H
Sbjct: 641 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ  EI   LD +   +K  GY PDT  V  D+++EEKE  L  HSEKLAIA+G++++S 
Sbjct: 701 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSE 760

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              I + KNLR+C DCHT  K IS    R I+VRD +RFHHFK+G CSC DFW
Sbjct: 761 DKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 183/405 (45%), Gaps = 54/405 (13%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA--LVLFMNMIDHRVMVDEVVVVS 299
           G+++ A  LF ++P  D+ +++ LI  Y  +     A  L L+  M+ HRV  +      
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
            L AC+ L     G ++H  A+  G++  + +  AL+ MY  C  +  A  +F      D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS--LFMEM 417
           L++WN+M                               ++GYA H  +   ++  L M+M
Sbjct: 191 LVAWNAM-------------------------------LAGYAHHGMYHHAVAHLLSMQM 219

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IR---------KNGLKINSILGTTL 467
           Q H +RP+ +TLV+++       AL QG  +HAY IR         K+ L    +LGT L
Sbjct: 220 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTAL 279

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG---VT 524
           +DMY K G +  A  VF     +   +W+ALI GF +     ++  +F  M   G   ++
Sbjct: 280 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P  I     L AC  +  +  G +  ++++ +  +  +      ++ +  +AG++ +A  
Sbjct: 340 PTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
           L + M +  D  ++ AL+    ++G  E    V +K+    ++PD
Sbjct: 397 LFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 16/249 (6%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS--ETLSLFMEMQHHGIRPDEA 427
           ++  G + +A  LFD +   DV +++ +I  Y+     +  + L L+  M  H + P+  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T    + AC+ L     G+ IH +    GL+ +  + T L+DMY+K  C+ +A  +F   
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLE--MFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             + + +WNA++ G+A +G+   ++   +  +M+   + PN  T V +L      G + +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 546 GHRHFNSMIQEHRLEPNSKHYG----------CMVDLLGRAGMLKEAEELIESMPMSPDV 595
           G       I+   L PN                ++D+  + G L  A  + ++MP   +V
Sbjct: 247 GTSVHAYCIRA-CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 596 ATWGALLGA 604
            TW AL+G 
Sbjct: 306 -TWSALIGG 313


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/781 (34%), Positives = 436/781 (55%), Gaps = 83/781 (10%)

Query: 63  FAASRLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI-C 117
           F  S+ I  ST L+       ++S S   F ++   N F +N+++ AY++     +A+ C
Sbjct: 48  FGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNC 107

Query: 118 ---LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174
              L+ +    ++  D YT+P + +A    +S+ +GK +H  V K GF+ DV+V  +L++
Sbjct: 108 VNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVH 164

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------- 224
           +Y+  G L  A K+F + PV D+ SWN++++G+    N   A  + N+M           
Sbjct: 165 LYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTIT 224

Query: 225 -----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                        + ++  SN++I ++ + G + +A  +F +M 
Sbjct: 225 VASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQME 284

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +DLVSW+++I+ YEQN     AL  F  M    +  D + VVS+ S  + L+  +   S
Sbjct: 285 VRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRS 344

Query: 316 VHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           +    ++   ++  + + NAL++MY+  G                          Y+ C 
Sbjct: 345 ILGFVIRREWLDKDVVIGNALVNMYAKLG--------------------------YMNC- 377

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVI 433
               A  +FD +  KD +SW+T+++GY Q+   SE +  +  M+      P++ T VS+I
Sbjct: 378 ----AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            A +H+ AL QG  IHA + KN L ++  + T LID+Y K G +++A+ +F+        
Sbjct: 434 PAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSV 493

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            WNA+I    ++G  +++L++F +M    V  + ITFV +L AC H GLVDEG + F+ M
Sbjct: 494 PWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIM 553

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            +E+ ++P+ KHYGCMVDLLGRAG L++A EL+ +MP+ PD + WGALL ACK +G+ E+
Sbjct: 554 QKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAEL 613

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G     +L+E+  ++ G++VLLSNI+A+  +W+ V++VR +   RG+ K PG S +    
Sbjct: 614 GTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGS 673

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
               F  G++THP+  EI   L  ++ K+K  GY PD   V  DI+++EKE  L  HSE+
Sbjct: 674 KAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSER 733

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LAIAFG+I+  P +PIRI KNLR+C DCH A K+ISR  +REIVVRD +RFHHFK G CS
Sbjct: 734 LAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICS 793

Query: 794 C 794
           C
Sbjct: 794 C 794



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/530 (28%), Positives = 249/530 (46%), Gaps = 77/530 (14%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H  +L  G   ++ ++  LIN+Y   GD+S +R  FD     ++ SWNSI++ YV  
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 211 DNVEEAKFIYNKM----------P------------------------------ERNIIA 230
               EA    N++          P                              E ++  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFV 158

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           + S++ L+ R G +  A ++F +MP KD+ SW+A+IS + QN     AL +   M    V
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            +D + V S+L  CA    V  G  +H   +K G++  + + NALI+MYS  G +  A+ 
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQM 278

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD     DL+SWNS                               +I+ Y Q++  S  
Sbjct: 279 VFDQMEVRDLVSWNS-------------------------------IIAAYEQNNDPSTA 307

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTTLID 469
           L  F  MQ  GIRPD  T+VS+ S  + L      + I  + IR+  L  + ++G  L++
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNEI 528
           MY KLG ++ A  VF     K   SWN L+ G+  NGLA ++++ ++ M++   T PN+ 
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+V ++ A  H+G + +G +    +I+ + L  +     C++DL G+ G L++A  L   
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLS 636
           +P    V  W A++ +   HG  E   ++ + ++   ++ DH  F  LLS
Sbjct: 487 IPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLS 535



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/531 (24%), Positives = 230/531 (43%), Gaps = 84/531 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S     ++   +   G   D F A+ L+   +    +  +  + K+F  +   + 
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR---YGVLDVAHKVFVDMPVKDV 187

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+  + Q      A+ +   M    V +D  T   +    A    V  G LIH H
Sbjct: 188 GSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLH 247

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G DSDV+V+N LINMY+  G L  A+ +FD+  V DLVSWNSI+A Y   ++   A
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 217 KFIYNKMP----------------------------------------ERNIIASNSMIV 236
              +  M                                         +++++  N+++ 
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEV 295
           ++ + G +  A  +F ++P+KD +SW+ L++ Y QN +  EA+  +  M + R  + ++ 
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             VS++ A +++  ++ G  +HA  +K  +   + +   LI +Y  CG +          
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL---------- 477

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                                E A +LF  +     V W+ +I+    H +  E L LF 
Sbjct: 478 ---------------------EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKL 474
           +M    ++ D  T VS++SAC+H   +D+G+     ++K  G+K +      ++D+  + 
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 475 GCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLA-------DKSLEMFSE 517
           G ++ A E+      +   S W AL+    + G A       D+ LE+ SE
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSE 627



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 43/334 (12%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++ ++C N   V A   +HAL +  G    I L   LI++Y + G+I+ +   FD  H  
Sbjct: 27  ALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK 83

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++ SWNS+IS Y++ G                             H+  +    LF    
Sbjct: 84  NIFSWNSIISAYVRFGKY---------------------------HEAMNCVNQLFSMCG 116

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              +RPD  T   ++ AC  LV    GK +H  + K G + +  +  +L+ +Y + G +D
Sbjct: 117 GGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLD 173

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A +VF     K V SWNA+I GF  NG A  +L + + MK  GV  + IT   +L  C 
Sbjct: 174 VAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCA 233

Query: 539 HMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
               V  G   H H    + +H L+ +      ++++  + G L++A+ + + M +  D+
Sbjct: 234 QSDDVINGVLIHLH----VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DL 288

Query: 596 ATWGALLGACKKHGDHEMGERV--GRKLVELQPD 627
            +W +++ A +++ D     R   G +L  ++PD
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/813 (32%), Positives = 429/813 (52%), Gaps = 75/813 (9%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PTI  + L    +  ++        +Q+I   L  D F A++L+K  +DL       Y F
Sbjct: 28  PTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVF 87

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
             F     P G + N M+  Y+Q    ++ + L+ LM + N+ VD+ +     +A A  L
Sbjct: 88  DQFF---QPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSL 144

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G  I    ++ G + + +V +++I+     G +  A+++FD  P  D+V WNSI+ 
Sbjct: 145 DYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIG 204

Query: 206 GYVNADNVEEAKFIYNKM------PE---------------------------------R 226
           GYV A   + A  ++ +M      P                                   
Sbjct: 205 GYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGN 264

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I+   S + ++ + G++  A  +F +MP ++LVSW+A+IS   +N +  E+  LF  ++
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                 D   +VS+L  C+    +  G  +H  A++   E  + L  A++ +YS      
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYS------ 377

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCGS+++A  +F+ M +++V++W+ M+ G AQ+  
Sbjct: 378 -------------------------KCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGH 412

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             + L LF +MQ  GI  +  T VS++ +C HL +L +G+ IH ++ + G   + +  T 
Sbjct: 413 AEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTA 472

Query: 467 LIDMYMKLGCVDNALEVF-HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           L+DMY K G ++ A  +F HG+  K V  WN++I G+ M+G   +++ ++ +M + G+ P
Sbjct: 473 LVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKP 532

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N+ TF+ +L AC H  LV++G   FNSM ++H + P  KHY C+VDLL RAG  +EA+ L
Sbjct: 533 NQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQAL 592

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           IE MP  P  A   ALL  C+ H +  +G +   KL+ L   + G +++LSNI+A   RW
Sbjct: 593 IEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRW 652

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           D V  +RG+M  RG+ K PG S++E    +H F AGD +HP   EI + L+ +   ++  
Sbjct: 653 DKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETS 712

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  V  D+D+E K   L+ HSE+LAIAFGL+T    + IRI KNLR+C DCHT  
Sbjct: 713 GYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVT 772

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K+IS+   REI+VRD +RFHHF +G CSC D+W
Sbjct: 773 KYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 365/653 (55%), Gaps = 35/653 (5%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H  V+K G  S V V N+++NMY  CGD                            
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD---------------------------- 214

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
               E A  ++ +MP R++ + N+M+ L    G +  A  LF+ MP + +VSW+A+I+ Y
Sbjct: 215 ---AETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGY 271

Query: 270 EQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN +  +AL LF  M+    M  DE  + SVLSACANL  V+ G  VHA  ++  +   
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDL--ISWNSMISGYLKCGSVEKARALFDAM 386
             + NALI  Y+  G +  A ++ D     DL  IS+ +++ GY+K G +E AR +F  M
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM 391

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +DVV+W+ MI GY Q+ +  E + LF  M   G  P+  TL +V+S C  L  LD GK
Sbjct: 392 NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGK 451

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMN 505
            IH    ++ L+ +S +   +I MY + G    A  +F      K   +W ++I+  A +
Sbjct: 452 QIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  ++++ +F EM ++GV P+ IT+VGVL AC H G V+EG R+++ +  EH++ P   H
Sbjct: 512 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 571

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL RAG+  EA+E I  MP+ PD   WG+LL AC+ H + E+ E    KL+ + 
Sbjct: 572 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P++ G +  ++N++++ GRW D   +      + V K  G S       IH F A D  H
Sbjct: 632 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 691

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ + +  M   M +++K  G+ PD   V  D+D E KE  L RHSEKLAIAFGLI+   
Sbjct: 692 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 751

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +R+MKNLR+CNDCH A K IS+  DREI+VRD  RFHHF+ G CSC D+W
Sbjct: 752 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  228 bits (582), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 143/507 (28%), Positives = 238/507 (46%), Gaps = 70/507 (13%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAV----CGDLSAARKLFDESPVLDLVSWNSILA 205
           G+ IH   +KAG  +  Y+ N L++ Y       G L  AR+LFDE P            
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP------------ 92

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                            +  RN+   NS++ +F + G +A+A  +F EMP++D VSW+ +
Sbjct: 93  -----------------LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +    +   + EA+   ++M        +  + +VLS+CA       G  VH+  VK+G+
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGL 195

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + + N++++MY  CG+  TA  +F+      + SWN+M+S     G ++ A +LF++
Sbjct: 196 GSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFES 255

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQ 444
           M  + +VSW+ MI+GY Q+   ++ L LF  M H   + PDE T+ SV+SAC +L  +  
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN------------------------- 479
           GK +HAYI +  +  NS +   LI  Y K G V+N                         
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 480 --------ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
                   A E+F     + V +W A+I+G+  NG  D+++++F  M   G  PN  T  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL  C  +  +D G +     I+   LE +S     ++ +  R+G    A  + + +  
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRS-LLERSSSVSNAIITMYARSGSFPWARRMFDQVCW 494

Query: 592 SPDVATWGALLGACKKHGDHEMGERVG 618
             +  TW +++ A  +HG  E  E VG
Sbjct: 495 RKETITWTSMIVALAQHGQGE--EAVG 519



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 149/349 (42%), Gaps = 36/349 (10%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI---E 80
           +   +  +++ T+  K  S +   +I+ Q + T L         +I F+  L  ++   +
Sbjct: 330 YNSQVTNALISTY-AKSGSVENARRIMDQSMETDL--------NVISFTALLEGYVKIGD 380

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  + + +   +  M+  Y Q     +AI L++ M+      ++YT   +   
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVS 199
            A    +  GK IH   +++  +    V+N +I MYA  G    AR++FD+     + ++
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           W S++         EEA  ++ +M      P+R  I    ++      G V E  R + +
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR--ITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 254 MPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           +  +     ++  ++ ++    +  ++ EA      M    V  D +   S+LSAC    
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP---VEPDAIAWGSLLSACR--- 612

Query: 309 VVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEITTAEKLFDA 354
            V     +  LA +  +    N     +A+ ++YS+CG  + A +++ A
Sbjct: 613 -VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/726 (37%), Positives = 419/726 (57%), Gaps = 41/726 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ--QAICLYKLMLNNNVGVDNYTYP-L 136
           +M  + + F  L   +   + TM+  Y  +N+ Q  +AI +   M+   +    +T   +
Sbjct: 95  DMDSTCEFFDQLPQRDSVSWTTMIVGY--KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           LA  +A R  +  GK +H  ++K G   +V V+N+L+NMYA CGD           P++ 
Sbjct: 153 LASVAATR-CMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD-----------PMM- 199

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                              AKF++++M  R+I + N+MI L  + G +  A   F++M +
Sbjct: 200 -------------------AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +D+V+W+++IS + Q      AL +F  M+ D  +  D   + SVLSACANL  +  G  
Sbjct: 241 RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMISGYLKC 373
           +H+  V  G +    + NALI MYS CG + TA +L +     +L +  + +++ GY+K 
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G + +A+ +F ++ ++DVV+W+ MI GY QH  + E ++LF  M   G RP+  TL +++
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGV 492
           S  + L +L  GK IH    K+G   +  +   LI MY K G + +A   F     E+  
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW ++II  A +G A+++LE+F  M   G+ P+ IT+VGV  AC H GLV++G ++F+ 
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M    ++ P   HY CMVDL GRAG+L+EA+E IE MP+ PDV TWG+LL AC+ H + +
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           +G+    +L+ L+P++ G +  L+N++++ G+W++  ++R  M    V K  G S IE  
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H F   D THP+ NEI   + ++  ++K  GY PDT  V  D+++E KE  L  HSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAFGLI+      +RIMKNLR+CNDCHTA KFIS+   REI+VRD  RFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 781 SCRDYW 786



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 250/517 (48%), Gaps = 68/517 (13%)

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           F  +L+H  V+K+G    VY+ N L+N+Y+  G    ARKLFDE                
Sbjct: 31  FTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDE---------------- 74

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                          MP R   + N+++  + ++G++   C  F ++P++D VSW+ +I 
Sbjct: 75  ---------------MPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIV 119

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y+    Y +A+ +  +M+   +   +  + +VL++ A    ++ G  VH+  VK+G+  
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRG 179

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            +++ N+L++MY+ CG+   A+ +FD     D+ SWN+MI+ +++ G ++ A A F+ M 
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGK 446
           E+D+V+W++MISG+ Q       L +F +M     + PD  TL SV+SAC +L  L  GK
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299

Query: 447 WIHAYIRKNGLKINSIL---------------------------------GTTLIDMYMK 473
            IH++I   G  I+ I+                                  T L+D Y+K
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           LG ++ A  +F   +++ V +W A+I+G+  +G   +++ +F  M   G  PN  T   +
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L     +  +  G +   S ++   +   S     ++ +  +AG +  A    + +    
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVS-NALITMYAKAGNITSASRAFDLIRCER 478

Query: 594 DVATWGALLGACKKHGDHEMG-ERVGRKLVE-LQPDH 628
           D  +W +++ A  +HG  E   E     L+E L+PDH
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 42/353 (11%)

Query: 299 SVLSACANLTVVKAGTS--------VHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           ++L  C NL       S        VH   +K G+   + L N L+++YS  G    A K
Sbjct: 11  TLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARK 70

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LFD        SWN+++S Y K G ++     FD + ++D VSW+TMI GY    Q+ + 
Sbjct: 71  LFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKA 130

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + +  +M   GI P + TL +V+++      ++ GK +H++I K GL+ N  +  +L++M
Sbjct: 131 IRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190

Query: 471 Y-------------------------------MKLGCVDNALEVFHGTEEKGVSSWNALI 499
           Y                               M++G +D A+  F    E+ + +WN++I
Sbjct: 191 YAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250

Query: 500 IGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
            GF   G   ++L++FS+M + S ++P+  T   VL AC ++  +  G +  +S I    
Sbjct: 251 SGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG-KQIHSHIVTTG 309

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGD 610
            + +      ++ +  R G ++ A  LIE        +  + ALL    K GD
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/765 (35%), Positives = 418/765 (54%), Gaps = 39/765 (5%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           S  Q  Q  + ++   L +DT   + L+ F  + L       S  + + L  P  F F++
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++ A+ + +     +  +  +    +  D +  P   ++ A   ++  G+ +H     +G
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F +D  V ++L +MY  C  +  ARKLFD  P  D+V W++++AGY     VEEAK ++ 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 222 KMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
           +M     E N+++ N M+  FG  G                                Y+E
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNG-------------------------------FYDE 223

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           A+ +F  M+      D   V  VL A   L  V  G  VH   +K G+     + +A++ 
Sbjct: 224 AVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLD 283

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF----DAMIEKDVVS 393
           MY  CG +    ++FD    +++ S N+ ++G  + G V+ A  +F    D  +E +VV+
Sbjct: 284 MYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVT 343

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+++I+  +Q+ +  E L LF +MQ +G+ P+  T+ S+I AC ++ AL  GK IH +  
Sbjct: 344 WTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSL 403

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           + G+  +  +G+ LIDMY K G +  A   F       + SWNA++ G+AM+G A +++E
Sbjct: 404 RRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETME 463

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           MF  M +SG  P+ +TF  VL AC   GL +EG R +NSM +EH +EP  +HY C+V LL
Sbjct: 464 MFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLL 523

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
            R G L+EA  +I+ MP  PD   WGALL +C+ H +  +GE    KL  L+P + G ++
Sbjct: 524 SRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYI 583

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+ASKG WD+   +R +M  +G+ K PG S IE    +H  LAGD++HPQ+ +I  
Sbjct: 584 LLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILE 643

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            LD++  ++K  GY P T  V  D+++++KE  L  HSEKLA+  GL+  SP  P++++K
Sbjct: 644 KLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIK 703

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLRIC+DCH   K ISR   REI VRD +RFHHFK G CSC DFW
Sbjct: 704 NLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/736 (35%), Positives = 395/736 (53%), Gaps = 71/736 (9%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M++ Y + +    A+  +  M +++V    Y +  L +       +  GK IH  V+ +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F  +++    ++NMYA C  ++ A  +FD  P  DLV WN++++GY      + A  +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 222 KMPERN---------------------------------------IIASNSMIVLFGRKG 242
           +M E                                         +  S +++ ++ + G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           +V+ A  +F  M  + +VSW+++I  Y Q+   E A+++F  M+D  V    V V+  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           ACA+L  ++ G  VH L  ++ ++  +++ N+LI MYS C  +  A  +F    N  L+S
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WN+MI GY + G V                               +E L+ F EMQ   I
Sbjct: 301 WNAMILGYAQNGCV-------------------------------NEALNAFCEMQSRNI 329

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +PD  T+VSVI A   L    Q KWIH  + +  L  N  + T L+DMY K G +  A +
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARK 389

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F     + V +WNA+I G+  +GL   S+E+F EMKK  + PN+ITF+  L AC H GL
Sbjct: 390 LFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGL 449

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           V+EG   F SM +++ +EP   HYG MVDLLGRAG L +A + I+ MP+ P +  +GA+L
Sbjct: 450 VEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAML 509

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
           GACK H + ++GE+   ++ +L PD  G+HVLL+NI+A+   W  V +VR +M + G+ K
Sbjct: 510 GACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQK 569

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PGCS++E    +H F +G  +HPQ  +I + L+ +  +++  GY PDT  +  D++ + 
Sbjct: 570 TPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDV 628

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           K   L  HSEKLAIAFGL+  S   PI I KNLR+C DCH A K+IS    REI+VRD H
Sbjct: 629 KVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMH 688

Query: 783 RFHHFKHGSCSCMDFW 798
           RFH FK G CSC D+W
Sbjct: 689 RFHLFKDGVCSCGDYW 704



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 224/502 (44%), Gaps = 83/502 (16%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            K+  +I   +I +G   + FA + ++          +++ ++ +F  +   +   +NTM
Sbjct: 46  LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCR---QINDAYNMFDRMPERDLVCWNTM 102

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYT----YPLLAQASALRLSVFEGKLIHDHVL 158
           +  Y Q    + A+ L   M       D+ T     P +A    LR+    G  +H +VL
Sbjct: 103 ISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI----GMAVHGYVL 158

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           +AGF+S V V+  L++MY+ CG +S AR +FD      +VSWNS++ GYV + + E A  
Sbjct: 159 RAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAML 218

Query: 219 IYNKMPERNIIAS---------------------------------------NSMIVLFG 239
           I+ KM +  +  +                                       NS+I ++ 
Sbjct: 219 IFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYS 278

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +   V  A  +FK +  K LVSW+A+I  Y QN    EAL  F  M    +  D   +VS
Sbjct: 279 KCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVS 338

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V+ A A L++ +    +H L ++  ++  + +  AL+ MY+ CG I TA KLFD  +   
Sbjct: 339 VIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARH 398

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +I+WN+M                               I GY  H     ++ LF EM+ 
Sbjct: 399 VITWNAM-------------------------------IDGYGTHGLGKTSVELFKEMKK 427

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVD 478
             I+P++ T +  +SAC+H   +++G      ++K+ G++        ++D+  + G ++
Sbjct: 428 GTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLN 487

Query: 479 NALEVFHGTEEK-GVSSWNALI 499
            A +       K G++ + A++
Sbjct: 488 QAWDFIQKMPIKPGITVYGAML 509


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/534 (44%), Positives = 342/534 (64%), Gaps = 33/534 (6%)

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y + ++    + ++  M+   V  ++     ++ AC     ++ G  +HA  +K G  
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG-- 124

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                                    F A    D  S N++I  Y+   S+E+AR +FD M
Sbjct: 125 -------------------------FGA----DGFSLNNLIHMYVNFQSLEQARRVFDNM 155

Query: 387 IEKD--VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            ++D   VSW+ MI+ Y Q ++  E  +LF  M+   +  D+    S++SACT L AL+Q
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GKWIH YI K+G++++S L TT+IDMY K GC++ A EVF+   +KG+SSWN +I G AM
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G  + ++E+F EM++  V P+ ITFV VL AC H GLV+EG  +F  M +   L+P  +
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           H+GCMVDLLGRAG+L+EA +LI  MP++PD    GAL+GAC+ HG+ E+GE++G+K++EL
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 395

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P + G +VLL+N++AS GRW+DV +VR +M  RGV K PG SMIE+   + EF+AG R 
Sbjct: 396 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 455

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HPQ  EI   LDE+ + ++  GY PDT  V  DID+EEKE  L+ HSEKLAIAFGL+   
Sbjct: 456 HPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTK 515

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P   +RI KNLRIC DCH A+K IS+ +DREI++RDR+RFHHF+ G CSC D+W
Sbjct: 516 PGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 161/363 (44%), Gaps = 77/363 (21%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C +  +  Q  SQ+I  GL AD  A  R+IKF         +S S            
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCA-------ISKS------------ 67

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
                    Y++  + +  I +Y  ML+ +V  + +TYP L +A  +  ++ EGK IH H
Sbjct: 68  --------GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAH 119

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL--VSWNSILAGYVNADNVE 214
           VLK GF +D +  N LI+MY     L  AR++FD  P  D   VSWN+++A YV ++ + 
Sbjct: 120 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLH 179

Query: 215 EAKFIYNKMPERNIIA---------------------------------------SNSMI 235
           EA  ++++M   N++                                        + ++I
Sbjct: 180 EAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVI 239

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G + +A  +F E+P+K + SW+ +I     +   E A+ LF  M    V  D +
Sbjct: 240 DMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI 299

Query: 296 VVVSVLSACANLTVVKAGTS-----VHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             V+VLSACA+  +V+ G          L +K G+E +      ++ +    G +  A K
Sbjct: 300 TFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF----GCMVDLLGRAGLLEEARK 355

Query: 351 LFD 353
           L +
Sbjct: 356 LIN 358


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/789 (34%), Positives = 423/789 (53%), Gaps = 110/789 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++R +I++     AI +   ML     +D++T P + +A     S   G   H  + 
Sbjct: 85  WNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLIC 144

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE---SPVLDLVSWNSILAGYVNADNVEE 215
             GF+S+V++ N L+ MY+ CG L  A  +FDE     + D++SWNSI++ +V + N   
Sbjct: 145 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 204

Query: 216 AKFIYNKMP---------ERNIIAS----------------------------------- 231
           A  +++KM          ER+ I S                                   
Sbjct: 205 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFV 264

Query: 232 -NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N++I  + + G +  A ++F  M  KD+VSW+A+++ Y Q+  ++ A  LF NM    +
Sbjct: 265 GNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 324

Query: 291 MVDE-----------------------------------VVVVSVLSACANLTVVKAGTS 315
            +D                                    V ++SVLSACA+L     G  
Sbjct: 325 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 384

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HA ++K    C + L N                     G + DL+ +N++I  Y KC S
Sbjct: 385 IHAYSLK---NCLLTLDNDF------------------GGEDEDLMVYNALIDMYSKCRS 423

Query: 376 VEKARALFD--AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVS 431
            + AR++FD   + E++VV+W+ MI G+AQ+   ++ L LF+EM  + +G+ P+  T+  
Sbjct: 424 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 483

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINS--ILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           ++ AC HL A+  GK IHAY+ ++    +S   +   LI+MY K G VD A  VF    +
Sbjct: 484 ILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ 543

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K   SW +++ G+ M+G   ++L++F +M+K+G  P++ITF+ VL AC H G+VD+G  +
Sbjct: 544 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 603

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F+SM  ++ L P ++HY   +DLL R G L +A + ++ MPM P    W ALL AC+ H 
Sbjct: 604 FDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHS 663

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+ E    KLVE+  ++DG + L+SNI+A+ GRW DV  +R +M + G+ K PGCS +
Sbjct: 664 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 723

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           +       F  GDR+HP   +I  +L+ +  ++K  GY P+T     D+D+EEK   L  
Sbjct: 724 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 783

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLA+A+GL+T  P  PIRI KNLR+C DCH+A  +IS+  D EIVVRD  RFHHFK+
Sbjct: 784 HSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 843

Query: 790 GSCSCMDFW 798
           GSCSC  +W
Sbjct: 844 GSCSCGGYW 852



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 176/417 (42%), Gaps = 73/417 (17%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G    A  + + +     V W+ LI  + +    + A+ +   M+     +D   +  VL
Sbjct: 65  GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVL 124

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--- 358
            AC  L   + G++ H L    G E  + + NAL+ MYS CG +  A  +FD        
Sbjct: 125 KACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGID 184

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D+ISWNS++S ++K  +   A  LF  M                         +L +  +
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKM-------------------------TLIVHEK 219

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
               R D  ++V+++ AC  L A+ Q K +H    +NG  ++  +G  LID Y K G ++
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLME 279

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK------------------ 520
           NA++VF+  E K V SWNA++ G++ +G    + E+F  M+K                  
Sbjct: 280 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYS 339

Query: 521 -----------------SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
                            SG  PN +T + VL AC  +G   +G       ++   L  ++
Sbjct: 340 QRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 399

Query: 564 KH---------YGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGD 610
                      Y  ++D+  +    K A  + + +P+   +V TW  ++G   ++GD
Sbjct: 400 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 456



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +++ YL CG+ + A  + + +     V W+ +I  + +  +    +++   M   G R D
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLD 116

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             TL  V+ AC  L +   G   H  I  NG + N  +   L+ MY + G ++ A  +F 
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 486 GTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEM------KKSGVTPNEITFVGVLGA 536
              ++G+    SWN+++     +  A  +L++FS+M      K +    + I+ V +L A
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 236

Query: 537 CRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           C  +  V +    H N++     L+    +   ++D   + G+++ A ++   M    DV
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMMEFK-DV 293

Query: 596 ATWGALLGACKKHGD 610
            +W A++    + G+
Sbjct: 294 VSWNAMVAGYSQSGN 308



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 106/505 (20%), Positives = 199/505 (39%), Gaps = 104/505 (20%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFK---QFTQILSQMILTGLIADTFAASRLI-KFST 73
           V+ KP  + +  +SI+   L  C S K   Q  ++    I  G   D F  + LI  ++ 
Sbjct: 216 VHEKPTNERSDIISIVNI-LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAK 274

Query: 74  DLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT 133
             L    M  + K+F  +E  +   +N M+  Y Q    + A  L+K M   N+ +D  T
Sbjct: 275 CGL----MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVT 330

Query: 134 YPLLAQASALR------LSVF-----------------------------EGKLIHDHVL 158
           +  +    + R      L+VF                             +G  IH + L
Sbjct: 331 WTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSL 390

Query: 159 K----------AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAG 206
           K           G D D+ V N LI+MY+ C    AAR +FD+ P+   ++V+W  ++ G
Sbjct: 391 KNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 450

Query: 207 YVNADNVEEAKFIYNKM--------PERNIIA---------------------------- 230
           +    +  +A  ++ +M        P    I+                            
Sbjct: 451 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY 510

Query: 231 -------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                  +N +I ++ + G+V  A  +F  M +K  +SW+++++ Y  +    EAL +F 
Sbjct: 511 DSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 570

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSC 342
            M     + D++  + VL AC++  +V  G S   +++   G+          I + +  
Sbjct: 571 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARF 630

Query: 343 GEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV---SWSTMI 398
           G +  A K   D       + W +++S      +VE A    + ++E +     S++ + 
Sbjct: 631 GRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLIS 690

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIR 423
           + YA   ++ +   +   M+  GI+
Sbjct: 691 NIYATAGRWKDVARIRHLMKKSGIK 715



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           LGT ++  Y+  G  D AL V           WN LI      G  D ++ +   M ++G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
              +  T   VL AC  +     G   F+ +I  +  E N      +V +  R G L+EA
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 583 EELIESMPMS--PDVATWGALLGA 604
             + + +      DV +W +++ A
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSA 195


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 365/653 (55%), Gaps = 35/653 (5%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H  V+K G  S V V N+++NMY  CGD                            
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD---------------------------- 214

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
               E A  ++ +MP R++ + N+M+ L    G +  A  LF+ MP + +VSW+A+I+ Y
Sbjct: 215 ---SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 271

Query: 270 EQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN +  +AL LF  M+    M  DE  + SVLSACANL  V+ G  VHA  ++  +   
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDL--ISWNSMISGYLKCGSVEKARALFDAM 386
             + NALI  Y+  G +  A ++ D     DL  IS+ +++ GY+K G +E AR +F  M
Sbjct: 332 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM 391

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +DVV+W+ MI GY Q+ +  E + LF  M   G  P+  TL +V+S C  L  LD GK
Sbjct: 392 NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGK 451

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMN 505
            IH    ++ L+ +S +   +I MY + G    A  +F      K   +W ++I+  A +
Sbjct: 452 QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 511

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  ++++ +F EM ++GV P+ IT+VGVL AC H G V+EG R+++ +  EH++ P   H
Sbjct: 512 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 571

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL RAG+  EA+E I  MP+ PD   WG+LL AC+ H + E+ E    KL+ + 
Sbjct: 572 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 631

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P++ G +  ++N++++ GRW D   +      + V K  G S       IH F A D  H
Sbjct: 632 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 691

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ + +  M   M +++K  G+ PD   V  D+D E KE  L RHSEKLAIAFGLI+   
Sbjct: 692 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 751

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +R+MKNLR+CNDCH A K IS+  DREI+VRD  RFHHF+ G CSC D+W
Sbjct: 752 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/507 (28%), Positives = 239/507 (47%), Gaps = 70/507 (13%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAV----CGDLSAARKLFDESPVLDLVSWNSILA 205
           G+ IH   +KAG  +  Y+ N L++ Y       G L  AR+LFDE P            
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP------------ 92

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                            +  RN+   NS++ +F + G +A+A  +F EMP++D VSW+ +
Sbjct: 93  -----------------LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +    +   + EA+   ++M        +  + +VLS+CA       G  VH+  VK+G+
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGL 195

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + + N++++MY  CG+  TA  +F+      + SWN+M+S     G ++ A +LF++
Sbjct: 196 GSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFES 255

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQ 444
           M ++ +VSW+ MI+GY Q+   ++ L LF  M H   + PDE T+ SV+SAC +L  +  
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN------------------------- 479
           GK +HAYI +  +  NS +   LI  Y K G V+N                         
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 480 --------ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
                   A E+F     + V +W A+I+G+  NG  D+++++F  M   G  PN  T  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL  C  +  +D G +     I+   LE +S     ++ +  R+G    A  + + +  
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRS-LLEQSSSVSNAIITMYARSGSFPWARRMFDQVCW 494

Query: 592 SPDVATWGALLGACKKHGDHEMGERVG 618
             +  TW +++ A  +HG  E  E VG
Sbjct: 495 RKETITWTSMIVALAQHGQGE--EAVG 519



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 149/349 (42%), Gaps = 36/349 (10%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI---E 80
           +   +  +++ T+  K  S +   +I+ Q + T L         +I F+  L  ++   +
Sbjct: 330 YNSQVTNALISTY-AKSGSVENARRIMDQSMETDL--------NVISFTALLEGYVKIGD 380

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  + + +   +  M+  Y Q     +AI L++ M+      ++YT   +   
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVS 199
            A    +  GK IH   +++  +    V+N +I MYA  G    AR++FD+     + ++
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           W S++         EEA  ++ +M      P+R  I    ++      G V E  R + +
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR--ITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 254 MPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           +  +     ++  ++ ++    +  ++ EA      M    V  D +   S+LSAC    
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACR--- 612

Query: 309 VVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEITTAEKLFDA 354
            V     +  LA +  +    N     +A+ ++YS+CG  + A +++ A
Sbjct: 613 -VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/805 (35%), Positives = 431/805 (53%), Gaps = 78/805 (9%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C   K      Q+   +++TG  +D F A+ L+        F +   +  +F  +  
Sbjct: 17  LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD---ARSLFDAIPD 73

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLSVFEGKL 152
            +   +N +   Y+  ++  +A+ L+  M+ + +  + ++   ++   + L  SV +G+ 
Sbjct: 74  RSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV-QGRK 132

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH +++K G+DSD +  N L++MYA  G L  A  +FDE    D+VSWN+I+AG V  + 
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEY 192

Query: 213 VEEAKFIYNKMPERNI----------------------------------IASNS----- 233
              A  +  +M +  +                                  + S+S     
Sbjct: 193 HHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVG 252

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ +  ++ +A  +FK MP++D+++W+A+IS + QNE  EEA  LF  M    +  +
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFN 312

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +  + +VL + A L        +HAL++K G E                           
Sbjct: 313 QTTLSTVLKSIAALQANYMCRQIHALSLKSGFE--------------------------- 345

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D    NS+I  Y KCG VE A  +F+     D+V ++++++ YAQ  Q  E L L
Sbjct: 346 ----FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           ++EMQ  GI+PD     S+++AC  L A +QGK +H +I K G   +   G +L++MY K
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAK 461

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +++A   F     +G+ SW+A+I G A +G   ++L++F +M K GV PN IT V V
Sbjct: 462 CGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSV 521

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLV E   +FNSM     +EP  +HY CM+DLLGRAG L+ A EL+  MP   
Sbjct: 522 LCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQA 581

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           +   WGALLGA + H + ++GE+    L+ L+P+  G HVLL+NI+AS G WD V  VR 
Sbjct: 582 NALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRR 641

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M    V K PG S +E    ++ F+ GDR+H +  EI   LDE++  LK  GY P    
Sbjct: 642 LMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEI 701

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
              D+++ EKE  L+ HSEKLA+AFGLI   P  PIR+ KNLRIC DCHT  KFIS+   
Sbjct: 702 DLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVS 761

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI+VRD +RFHHF+ GSCSC ++W
Sbjct: 762 REIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/544 (23%), Positives = 252/544 (46%), Gaps = 74/544 (13%)

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
            +  + + +P + +A  +   +  GK +H  V+  GFDSD +V N+L+ +YA CG    A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
           R LFD  P   +VSWN++ + YV++D   EA  +++ M                      
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             + +  ++N+++ ++ + G + +A  +F E+ K D+VSW+A+I
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           +    +E +  AL L   M    +  +   + S L ACA + + + G  +H+  +K+ + 
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               L   LI MYS C  +  A  +F      D+I+WN++IS                  
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVIS------------------ 286

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                        G++Q+++  E  SLF  M   GI  ++ TL +V+ +   L A    +
Sbjct: 287 -------------GHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR 333

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA   K+G + ++ +  +LID Y K G V++A  VF  +    +  + +L+  +A +G
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             +++L ++ EM+  G+ P+      +L AC  +   ++G +  +  I +     +    
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQG-KQVHVHILKFGFMSDIFAG 452

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VEL 624
             +V++  + G +++A      +P+   + +W A++G   +HG  +   ++ +++  V +
Sbjct: 453 NSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGV 511

Query: 625 QPDH 628
            P+H
Sbjct: 512 PPNH 515


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 365/653 (55%), Gaps = 35/653 (5%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H  V+K G  S V V N+++NMY  CGD                            
Sbjct: 77  GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD---------------------------- 108

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
               E A  ++ +MP R++ + N+M+ L    G +  A  LF+ MP + +VSW+A+I+ Y
Sbjct: 109 ---SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 165

Query: 270 EQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN +  +AL LF  M+    M  DE  + SVLSACANL  V+ G  VHA  ++  +   
Sbjct: 166 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 225

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDL--ISWNSMISGYLKCGSVEKARALFDAM 386
             + NALI  Y+  G +  A ++ D     DL  IS+ +++ GY+K G +E AR +F  M
Sbjct: 226 SQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM 285

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +DVV+W+ MI GY Q+ +  E + LF  M   G  P+  TL +V+S C  L  LD GK
Sbjct: 286 NNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGK 345

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMN 505
            IH    ++ L+ +S +   +I MY + G    A  +F      K   +W ++I+  A +
Sbjct: 346 QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 405

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  ++++ +F EM ++GV P+ IT+VGVL AC H G V+EG R+++ +  EH++ P   H
Sbjct: 406 GQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSH 465

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL RAG+  EA+E I  MP+ PD   WG+LL AC+ H + E+ E    KL+ + 
Sbjct: 466 YACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 525

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P++ G +  ++N++++ GRW D   +      + V K  G S       IH F A D  H
Sbjct: 526 PNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVH 585

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ + +  M   M +++K  G+ PD   V  D+D E KE  L RHSEKLAIAFGLI+   
Sbjct: 586 PQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 645

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +R+MKNLR+CNDCH A K IS+  DREI+VRD  RFHHF+ G CSC D+W
Sbjct: 646 KTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 205/416 (49%), Gaps = 37/416 (8%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           +F + G +A+A  +F EMP++D VSW+ ++    +   + EA+   ++M        +  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + +VLS+CA       G  VH+  VK+G+   + + N++++MY  CG+  TA  +F+   
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
              + SWN+M+S     G ++ A +LF++M ++ +VSW+ MI+GY Q+   ++ L LF  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 417 MQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           M H   + PDE T+ SV+SAC +L  +  GK +HAYI +  +  NS +   LI  Y K G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 476 CVDN---------------------------------ALEVFHGTEEKGVSSWNALIIGF 502
            V+N                                 A E+F     + V +W A+I+G+
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
             NG  D+++++F  M   G  PN  T   VL  C  +  +D G +     I+   LE +
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRS-LLEQS 359

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           S     ++ +  R+G    A  + + +    +  TW +++ A  +HG  E  E VG
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE--EAVG 413



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 149/349 (42%), Gaps = 36/349 (10%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI---E 80
           +   +  +++ T+  K  S +   +I+ Q + T L         +I F+  L  ++   +
Sbjct: 224 YNSQVTNALISTY-AKSGSVENARRIMDQSMETDL--------NVISFTALLEGYVKIGD 274

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  + + +   +  M+  Y Q     +AI L++ M+      ++YT   +   
Sbjct: 275 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 334

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVS 199
            A    +  GK IH   +++  +    V+N +I MYA  G    AR++FD+     + ++
Sbjct: 335 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 394

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           W S++         EEA  ++ +M      P+R  I    ++      G V E  R + +
Sbjct: 395 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR--ITYVGVLSACSHAGFVNEGKRYYDQ 452

Query: 254 MPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           +  +     ++  ++ ++    +  ++ EA      M    V  D +   S+LSAC    
Sbjct: 453 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACR--- 506

Query: 309 VVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEITTAEKLFDA 354
            V     +  LA +  +    N     +A+ ++YS+CG  + A +++ A
Sbjct: 507 -VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 554


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/757 (34%), Positives = 411/757 (54%), Gaps = 70/757 (9%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  +   NG  +N ++  Y Q    ++ + L+  M         +T   + + 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   S+ EGK++H   L++G + D ++  +L++MY+ CG +  A K+F +    D+V+W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 201 NSILAGYVNADNVEEAKFIYNKMP------------------------------------ 224
           ++++ G     + +EA  +++ M                                     
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 225 ---ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
              E + + SN +I+++ +   V +  ++F+ M   DLVSW+AL+S +  ++       +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M+      +    +SVL +C++L   + G  VHA  +K   +    +  AL+ MY+ 
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA- 299

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
                                         K   +E A   FD ++ +D+ SW+ +ISGY
Sbjct: 300 ------------------------------KARCLEDAGVAFDRLVNRDIFSWTVIISGY 329

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           AQ DQ  + +  F +MQ  GI+P+E TL S +S C+H+  L+ G+ +HA   K G   + 
Sbjct: 330 AQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDI 389

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +G+ L+D+Y K GC+++A  +F G   + + SWN +I G++ +G  +K+LE F  M   
Sbjct: 390 FVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSE 449

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ P+E TF+GVL AC  MGLV+EG + F+SM + + + P+ +HY CMVD+LGRAG   E
Sbjct: 450 GIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNE 509

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
            +  IE M ++P    W  +LGACK HG+ + GE+  +KL E++P  D  ++LLSNI AS
Sbjct: 510 VKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFAS 569

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
           KGRWDDV  +R +M  RG+ K PGCS +E +G +H FL+ D +HP+I EI   LD++ + 
Sbjct: 570 KGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQS 629

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           L   GY P T  V  ++  +EK   L+ HSE+LA++F L++ +   PIRI KNLRIC DC
Sbjct: 630 LMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDC 689

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H   K IS   ++EIVVRD  RFHHFK G+CSC D W
Sbjct: 690 HDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/665 (39%), Positives = 377/665 (56%), Gaps = 44/665 (6%)

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           PLL  +S + LS +     H H      +++V  +N LI  Y  CGD+ +A ++F++  V
Sbjct: 14  PLLT-SSFVTLSKYVSSHTHQHEFN---NNNVIASNKLIASYVRCGDIDSAVRVFEDMKV 69

Query: 195 LDLVSWNSILAGYVN-ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
              V+WNSILA +     + E A+ ++ K+P+ N ++ N M+        V +A   F  
Sbjct: 70  KSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDS 129

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MP KD+ SW+ +IS   Q  +  EA  LF  M +                C + + + +G
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKN--------------CVSWSAMVSG 175

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
                                    Y +CG++  A + F A     +I+W +MI+GY+K 
Sbjct: 176 -------------------------YVACGDLDAAVECFYAAPMRSVITWTAMITGYMKF 210

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G VE A  LF  M  + +V+W+ MI+GY ++ +  + L LF  M   G++P+  +L SV+
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
             C++L AL  GK +H  + K  L  ++  GT+L+ MY K G + +A E+F     K V 
Sbjct: 271 LGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVV 330

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            WNA+I G+A +G   K+L +F EMKK G+ P+ ITFV VL AC H GLVD G ++FN+M
Sbjct: 331 CWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM 390

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            ++  +E   +HY CMVDLLGRAG L EA +LI+SMP  P  A +G LLGAC+ H +  +
Sbjct: 391 RRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNL 450

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
            E   + L+EL P     +V L+N++A++ RWD V  +R  M    VVKIPG S IE N 
Sbjct: 451 AEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINS 510

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
           ++H F + DR HP++  I   L ++ KK+KL GY PD   V  D+ +E KE  L  HSEK
Sbjct: 511 VVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEK 570

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LAIAFGL+ +    PIR+ KNLR+C DCH+A K+IS    REI+VRD  RFHHFK G CS
Sbjct: 571 LAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCS 630

Query: 794 CMDFW 798
           C D+W
Sbjct: 631 CRDYW 635



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 48/229 (20%)

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD-- 130
           T  + F  +  + ++F  +       +N M+  Y++    +  + L++ ML   V  +  
Sbjct: 205 TGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNAL 264

Query: 131 NYTYPLL--AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           + T  LL  +  SAL+L    GK +H  V K    SD     +L++MY+ CGDL  A +L
Sbjct: 265 SLTSVLLGCSNLSALQL----GKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWEL 320

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-----------IIASN----- 232
           F + P  D+V WN++++GY      ++A  ++++M +             ++A N     
Sbjct: 321 FIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLV 380

Query: 233 ------------------------SMIVLFGRKGNVAEACRLFKEMPKK 257
                                    M+ L GR G ++EA  L K MP K
Sbjct: 381 DLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFK 429


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/706 (38%), Positives = 378/706 (53%), Gaps = 72/706 (10%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+  L +  A R  +  G+ +H  +   G DS+      L NMYA C   + AR++FD  
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 193 PVLDLVSWNSILAGYVN---------------------ADNV------------------ 213
           PV D V+WN+++AGY                        D++                  
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 214 -EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
            E   F      E  +  + +++  + + G++  A  +F  MP K+ VSW+A+I  Y QN
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL LF  M++  V V +V V++ L AC  L  +  G  VH L V+IG++  +++ 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NALI MYS                               KC  V+ A  +FD +  +  V
Sbjct: 301 NALITMYS-------------------------------KCKRVDLASHVFDELDRRTQV 329

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MI G AQ+    + + LF  MQ   ++PD  TLVSVI A   +    Q +WIH Y 
Sbjct: 330 SWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYS 389

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L  +  + T LIDMY K G V+ A  +F+   E+ V +WNA+I G+  +G    ++
Sbjct: 390 IRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAV 449

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           E+F EMK  G+ PNE TF+ VL AC H GLVDEG  +F SM +++ LEP  +HYG MVDL
Sbjct: 450 ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDL 509

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG L EA   I+ MPM P ++ +GA+LGACK H + E+ E   +K+ EL P    +H
Sbjct: 510 LGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYH 569

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLL+NI+A+   W DV  VR  M + G+ K PG S+I+    IH F +G   H Q  EI 
Sbjct: 570 VLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIY 629

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           + L ++ +++K  GY PDT  +  D++ + K   L  HSEKLAIAFGLI  +P   I+I 
Sbjct: 630 SRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIK 688

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+CNDCH A K IS    REI++RD  RFHHFK G CSC D+W
Sbjct: 689 KNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 39/266 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F ++ + N   +N M+  Y Q    ++A+ L+  M+   V V + +     QA      
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + EG  +H+ +++ G DS+V V N LI MY+ C  +  A  +FDE      VSWN+++ G
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
                  E+A  ++ +M                                        +++
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQD 397

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +    ++I ++ + G V  A  LF    ++ +++W+A+I  Y  +   + A+ LF  M  
Sbjct: 398 VYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAG 313
             ++ +E   +SVLSAC++  +V  G
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEG 483



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 4/261 (1%)

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           A        L+ F+ M   G  P   T  S++  C     L  G+ +HA +   G+   +
Sbjct: 35  AARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEA 94

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-K 520
           +  T L +MY K     +A  VF     +   +WNAL+ G+A NGLA  ++EM   M+ +
Sbjct: 95  LAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEE 154

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G  P+ IT V VL AC +   +          I+   LE        ++D   + G ++
Sbjct: 155 EGERPDSITLVSVLPACANARALAACREAHAFAIRSG-LEELVNVATAILDAYCKCGDIR 213

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS-NIH 639
            A  + + MP    V +W A++    ++GD      +  ++VE   D     VL +    
Sbjct: 214 AARVVFDWMPTKNSV-SWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 640 ASKGRWDDVLEVRGMMVRRGV 660
              G  D+ + V  ++VR G+
Sbjct: 273 GELGCLDEGMRVHELLVRIGL 293


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/706 (37%), Positives = 388/706 (54%), Gaps = 56/706 (7%)

Query: 99  FNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           +N+++ AY+  +    A+ L+ K+   + +  D  +   +  A A   +   G+ +H   
Sbjct: 331 WNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFS 390

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           +++G   DV+V N +++MYA CG +  A K+F      D+VSWN+++ GY  A  +E A 
Sbjct: 391 IRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHAL 450

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
            ++ +M E NI                           + D+V+W+A+I+ Y Q     E
Sbjct: 451 SLFERMTEENI---------------------------ELDVVTWTAVITGYAQRGQGCE 483

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL +F  M D     + V +VS+LSAC ++  +  G   H  A+K      +NL      
Sbjct: 484 ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKF----ILNLDGP--- 536

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD--VVSWS 395
                          D G + DL   N +I  Y KC S E AR +FD++  KD  VV+W+
Sbjct: 537 ---------------DPGAD-DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580

Query: 396 TMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
            MI GYAQH   +  L LF  M      I+P++ TL   + AC  L AL  G+ +HAY+ 
Sbjct: 581 VMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL 640

Query: 454 KNGL-KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
           +N    +   +   LIDMY K G VD A  VF    ++   SW +L+ G+ M+G  + +L
Sbjct: 641 RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDAL 700

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F EM+K  + P+ ITF+ VL AC H G+VD G   FN M ++  ++P  +HY CMVDL
Sbjct: 701 RVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDL 760

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
            GRAG L EA +LI  MPM P    W ALL AC+ H + E+GE    +L+EL+  +DG +
Sbjct: 761 WGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSY 820

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
            LLSNI+A+  RW DV  +R  M R G+ K PGCS I+    +  F  GDR+HPQ  +I 
Sbjct: 821 TLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIY 880

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L ++ +++K  GY P T     D+D EEK   LF HSEKLA+A+G++T+ P  PIRI 
Sbjct: 881 ETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRIT 940

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC DCH+A  +IS+  + EI++RD  RFHHFK+GSCSC  +W
Sbjct: 941 KNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 230/439 (52%), Gaps = 39/439 (8%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQNEMYEEALVLFM 283
           N+   N+++ ++G+ G +  A  +F ++  +   DLVSW++++S Y        AL LF 
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 284 NMIDHRVMVDEVV-VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            M    +M  +V+ +V++L ACA+L     G  VH  +++ G+   + + NA++ MY+ C
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMI 398
           G++  A K+F      D++SWN+M++GY + G +E A +LF+ M    IE DVV+W+ +I
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           +GYAQ  Q  E L +F +M   G RP+  TLVS++SAC  + AL  GK  H Y  K  L 
Sbjct: 473 TGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILN 532

Query: 459 INSI--------LGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNGLA 508
           ++          +   LIDMY K    + A ++F     +++ V +W  +I G+A +G A
Sbjct: 533 LDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDA 592

Query: 509 DKSLEMFSEMKK--SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           + +L++FS M K    + PN+ T    L AC  +  +      F   +  + L      Y
Sbjct: 593 NNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAAL-----RFGRQVHAYVLR---NFY 644

Query: 567 G--------CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           G        C++D+  ++G +  A+ + ++MP   +  +W +L+     HG  E   RV 
Sbjct: 645 GSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGEDALRVF 703

Query: 619 RKL--VELQPDHDGFHVLL 635
            ++  V L PD   F V+L
Sbjct: 704 DEMRKVPLVPDGITFLVVL 722



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 21/336 (6%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
            ++I  Y+   S   A  L + +      V  W+ +I          +  +L+ +M+  G
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
             PD  T   V  AC +L +L  G  +HA + ++G   N  +   ++ MY K G + +A 
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAH 314

Query: 482 EVFHGTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGAC 537
            +F     +G+    SWN+++  +     A+ +L +F +M  +  ++P+ I+ V +L AC
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +     G R  +       L  +      +VD+  + G ++EA ++ + M    DV +
Sbjct: 375 ASLAASLRG-RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK-DVVS 432

Query: 598 WGALLGACKKHGDHE----MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           W A++    + G  E    + ER+  + +EL  D   +  +++  +A +G+  + L+V  
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIEL--DVVTWTAVITG-YAQRGQGCEALDVFR 489

Query: 654 MMV----RRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
            M     R  VV +   S++ A   +   L G  TH
Sbjct: 490 QMCDCGSRPNVVTL--VSLLSACVSVGALLHGKETH 523


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/706 (38%), Positives = 378/706 (53%), Gaps = 72/706 (10%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+  L +  A R  +  G+ +H  +   G DS+      L NMYA C   + AR++FD  
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 193 PVLDLVSWNSILAGYVN---------------------ADNV------------------ 213
           PV D V+WN+++AGY                        D++                  
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 214 -EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
            E   F      E  +  + +++  + + G++  A  +F  MP K+ VSW+A+I  Y QN
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL LF  M++  V V +V V++ L AC  L  +  G  VH L V+IG++  +++ 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NALI MYS                               KC  V+ A  +FD +  +  V
Sbjct: 301 NALITMYS-------------------------------KCKRVDLASHVFDELDRRTQV 329

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MI G AQ+    + + LF  MQ   ++PD  TLVSVI A   +    Q +WIH Y 
Sbjct: 330 SWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYS 389

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L  +  + T LIDMY K G V+ A  +F+   E+ V +WNA+I G+  +G    ++
Sbjct: 390 IRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAV 449

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           E+F EMK  G+ PNE TF+ VL AC H GLVDEG  +F SM +++ LEP  +HYG MVDL
Sbjct: 450 ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDL 509

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG L EA   I+ MPM P ++ +GA+LGACK H + E+ E   +K+ EL P    +H
Sbjct: 510 LGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYH 569

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLL+NI+A+   W DV  VR  M + G+ K PG S+I+    IH F +G   H Q  EI 
Sbjct: 570 VLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIY 629

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           + L ++ +++K  GY PDT  +  D++ + K   L  HSEKLAIAFGLI  +P   I+I 
Sbjct: 630 SRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIK 688

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+CNDCH A K IS    REI++RD  RFHHFK G CSC D+W
Sbjct: 689 KNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 39/266 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F ++ + N   +N M+  Y Q    ++A+ L+  M+   V V + +     QA      
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + EG  +H+ +++ G DS+V V N LI MY+ C  +  A  +FDE      VSWN+++ G
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
                  E+A  ++ +M                                        +++
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQD 397

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +    ++I ++ + G V  A  LF    ++ +++W+A+I  Y  +   + A+ LF  M  
Sbjct: 398 VYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAG 313
             ++ +E   +SVLSAC++  +V  G
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEG 483



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 4/253 (1%)

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L+ F+ M   G  P   T  S++  C     L  G+ +HA +   G+   ++  T L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEI 528
           MY K     +A  VF     +   +WNAL+ G+A NGLA  ++EM   M+ + G  P+ I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T V VL AC +   +          I+   LE        ++D   + G ++ A  + + 
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSG-LEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS-NIHASKGRWDD 647
           MP    V +W A++    ++GD      +  ++VE   D     VL +       G  D+
Sbjct: 222 MPTKNSV-SWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 648 VLEVRGMMVRRGV 660
            + V  ++VR G+
Sbjct: 281 GMRVHELLVRIGL 293


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 380/693 (54%), Gaps = 71/693 (10%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ + K  H  +L+ G   D Y+ N L+           A  +F ++P  ++  +N+++ 
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASN--------------------------------- 232
           G V+ D   +A  +Y  M +      N                                 
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 233 -------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                   ++ L+ + G + +A ++F E+P+K++VSW+A+I  Y ++  + EAL LF  +
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGL 194

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           ++  +  D   +V +L AC+ +  + +G  +     + G                S G +
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG----------------SVGNV 238

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  L D                Y KCGS+E+AR +FD M+EKDVV WS +I GYA + 
Sbjct: 239 FVATSLVDM---------------YAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNG 283

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E L +F EMQ   +RPD   +V V SAC+ L AL+ G W    +  +    N +LGT
Sbjct: 284 MPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGT 343

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LID Y K G V  A EVF G   K    +NA+I G AM G    +  +F +M K G+ P
Sbjct: 344 ALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQP 403

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +  TFVG+L  C H GLVD+GHR+F+ M     + P  +HYGCMVDL  RAG+L EA++L
Sbjct: 404 DGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDL 463

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I SMPM  +   WGALLG C+ H D ++ E V ++L+EL+P + G +VLLSNI+++  RW
Sbjct: 464 IRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRW 523

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           D+  ++R  + ++G+ K+PGCS +E +G++HEFL GD +HP  ++I   L+ + K L+  
Sbjct: 524 DEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREA 583

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY P T  V FD+++EEKE  L  HSEKLA+AF LI+    + IR++KNLR+C DCH A 
Sbjct: 584 GYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAI 643

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S+   REI+VRD +RFHHF  GSCSC D+W
Sbjct: 644 KLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 262/612 (42%), Gaps = 134/612 (21%)

Query: 33  LETHLQKC-----QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           + + L+KC     +S  Q  Q    ++  GL  DT+  + L++ S   L F    Y+  +
Sbjct: 1   MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSS---LHFAATQYATVV 57

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           FA    PN F++NT++R  +  +  + A+ +Y  M  +    DN+T+P + +A       
Sbjct: 58  FAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHY 117

Query: 148 FE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           F  G  +H  V+K GFD DV+V   L+ +Y+  G L+ ARK+FDE P  ++VSW +I+ G
Sbjct: 118 FHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICG 177

Query: 207 YVNADNVEEAKFIYNKMPER---------------------------------------N 227
           Y+ +    EA  ++  + E                                        N
Sbjct: 178 YIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGN 237

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +  + S++ ++ + G++ EA R+F  M +KD+V WSALI  Y  N M +EAL +F  M  
Sbjct: 238 VFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQR 297

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEI 345
             V  D   +V V SAC+ L  ++ G     L    G E   N  L  ALI  Y+ CG +
Sbjct: 298 ENVRPDCYAMVGVFSACSRLGALELGNWARGLM--DGDEFLSNPVLGTALIDFYAKCGSV 355

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A+++F      D + +N++ISG   CG V  A  +F  M++                 
Sbjct: 356 AQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKV---------------- 399

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                          G++PD  T V ++  CTH   +D G   H Y       ++S+   
Sbjct: 400 ---------------GMQPDGNTFVGLLCGCTHAGLVDDG---HRYFS----GMSSVFSV 437

Query: 466 T-LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           T  I+ Y   GC+ +                       A  GL  ++ ++   M    + 
Sbjct: 438 TPTIEHY---GCMVDLQ---------------------ARAGLLVEAQDLIRSMP---ME 470

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEP-NSKHYGCMVDLLGRAG 577
            N I +  +LG CR          H ++ + EH       LEP NS HY  + ++   + 
Sbjct: 471 ANSIVWGALLGGCR---------LHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASH 521

Query: 578 MLKEAEELIESM 589
              EAE++  S+
Sbjct: 522 RWDEAEKIRSSL 533



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 127/305 (41%), Gaps = 41/305 (13%)

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L +L Q K  H  + + GL  ++ L   L+   +       A  VF  T    +  +N L
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR------HMGLVDEGHRHFNS 552
           I G   N     ++ +++ M++ G  P+  TF  VL AC       H+GL        +S
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL------SLHS 126

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ +   + +      +V L  + G L +A ++ + +P   +V +W A++    + G   
Sbjct: 127 LVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIP-EKNVVSWTAIICGYIESGC-- 183

Query: 613 MGERVG--RKLVELQPDHDGFHVLLSNIHA-------SKGRWDDVLEVRGMMVRRGVVKI 663
            GE +G  R L+E+    D F  L+  ++A       + GRW D     G M   G V  
Sbjct: 184 FGEALGLFRGLLEMGLRPDSF-TLVRILYACSRVGDLASGRWID-----GYMRESGSVG- 236

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNML--DEMAKKLKLEGYAP-----DTLEVAF 716
              ++  A  ++  +             D M+  D +     ++GYA      + L+V F
Sbjct: 237 ---NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFF 293

Query: 717 DIDQE 721
           ++ +E
Sbjct: 294 EMQRE 298


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/542 (42%), Positives = 345/542 (63%), Gaps = 31/542 (5%)

Query: 258 DLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           D   ++ LI  Y Q     ++AL L+  M+   ++ ++     VL ACA L V+  G +V
Sbjct: 95  DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H   VK G +C I++QN ++HMYS C                               G +
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCA------------------------------GGI 184

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
             AR +FD M + D V+WS MI GYA+  + +E ++LF EMQ   + PDE T+VS++SAC
Sbjct: 185 NSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSAC 244

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           T L AL+ GKWI AYI ++ +     +   LIDM+ K G +  AL++F    EK + SW 
Sbjct: 245 TDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWT 304

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           ++I+G AM+G   ++  +F EM  SGV P+++ F+G+L AC H GLV+ G  +F SM+++
Sbjct: 305 SVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKK 364

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           ++L P  +HYGCMVD+  R G++KEA E + +MP+ P+      L+ AC+ HG+ ++GE+
Sbjct: 365 YKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEK 424

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
           + + L++ +P H+  +VLLSNI+A    W+   ++R +M  +G+ K+PG +MIE +  I+
Sbjct: 425 ITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIY 484

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           EF+AGD++H Q  EI  M+DEM +++K  GY P T EV  DI++E+KE +L RHSEKLAI
Sbjct: 485 EFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAI 544

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AFGL+   P  PIRI+KNLR+C+DCH+A+KFIS+ +DREI++RDR+RFHHFK G CSC D
Sbjct: 545 AFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGD 604

Query: 797 FW 798
           FW
Sbjct: 605 FW 606



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 246/536 (45%), Gaps = 99/536 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-- 94
           LQ C +  + TQI + ++  GL  +    ++    S+ L+   + + SF   A  ++   
Sbjct: 36  LQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISS-LIHATDYAASFLFSAEADTRLY 94

Query: 95  NGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           + F+FNT++RAY Q  +   +A+ LY +ML++ +  + +TYP + +A A    +  G+ +
Sbjct: 95  DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H  V+K GFD D++V NT+++MY+ C G +++ARK+FDE P  D V+W++++ GY     
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214

Query: 213 VEEAKFIYNKMP----------------------------------ERNII-----ASNS 233
             EA  ++ +M                                   ER+ I      SN+
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNA 274

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I +F + G++++A +LF+ M +K +VSW+++I     +   +EA  LF  M    V  D
Sbjct: 275 LIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPD 334

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +V  + +LSAC+           H+  V+ G E +              G +    KL  
Sbjct: 335 DVAFIGLLSACS-----------HSGLVERGREYF--------------GSMMKKYKLVP 369

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQF--SET 410
                 +  +  M+  Y + G V++A      M IE + V   T++S    H +F   E 
Sbjct: 370 -----KIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEK 424

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           ++  + M+H  +      L+S I A T  ++ ++   I   +   G+K   + G+T+I+ 
Sbjct: 425 ITKLL-MKHEPLHESNYVLLSNIYAKT--LSWEKKTKIREVMEVKGMK--KVPGSTMIE- 478

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
                 +DN +  F   ++                 + +   EM  EMKKSG  P+
Sbjct: 479 ------IDNEIYEFVAGDKSHKQH----------KEIYEMVDEMGREMKKSGYRPS 518



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 156/323 (48%), Gaps = 21/323 (6%)

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQ--HDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           S E    L+DA +      ++T+I  YAQ  H +  + L+L+  M H  I P++ T   V
Sbjct: 86  SAEADTRLYDAFL------FNTLIRAYAQTGHSK-DKALALYGIMLHDAILPNKFTYPFV 138

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-GCVDNALEVFHGTEEKG 491
           + AC  L  L+ G+ +H  + K G   +  +  T++ MY    G +++A +VF    +  
Sbjct: 139 LKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSD 198

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             +W+A+I G+A  G + +++ +F EM+ + V P+EIT V +L AC  +G ++ G +   
Sbjct: 199 SVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIE 257

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           + I+ H +    +    ++D+  + G + +A +L  +M     + +W +++     HG  
Sbjct: 258 AYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVIVGMAMHGRG 316

Query: 612 EMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG--VVKIP--G 665
           +    +  ++    + PD   F  LLS    S G  +   E  G M+++   V KI   G
Sbjct: 317 QEATCLFEEMTSSGVAPDDVAFIGLLSACSHS-GLVERGREYFGSMMKKYKLVPKIEHYG 375

Query: 666 C--SMIEANGIIHEFLAGDRTHP 686
           C   M    G++ E L   R  P
Sbjct: 376 CMVDMYCRTGLVKEALEFVRNMP 398


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/654 (40%), Positives = 379/654 (57%), Gaps = 52/654 (7%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL----------VSWNSILAGYVNADNV 213
           ++V+  N++I   A  GD   A + F     L L          +   S L    +    
Sbjct: 115 TNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQA 174

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            +   I+   P+  +  S++++ ++ + G + +A  LF E+  +++VSW+++I+ Y QN+
Sbjct: 175 HQQALIFGFEPD--LFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 232

Query: 274 MYEEALVLFMNMI--------DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
               AL+LF   +        D  V VD + +VSVLSAC+ ++       VH   +K G 
Sbjct: 233 DAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGF 292

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           E  + ++N L+  Y+                               KCG +  +R +FD 
Sbjct: 293 EGDLGVENTLMDAYA-------------------------------KCGELGVSRRVFDG 321

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQ 444
           M E+DV+SW+++I+ YAQ+   +E++ +F  M   G I  +  TL +V+ AC H  +   
Sbjct: 322 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 381

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK IH  + K GL+ N  +GT++IDMY K G V+ A + F    EK V SW+A++ G+ M
Sbjct: 382 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 441

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G A ++LE+F EM  +GV PN ITFV VL AC H GL++EG   F +M  E  +EP  +
Sbjct: 442 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 501

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HYGCMVDLLGRAG LKEA +LI+ M + PD   WGALLGAC+ H + ++GE   RKL EL
Sbjct: 502 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 561

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P + G++VLLSNI+A  GRW+DV  +R +M   G+VK PG S+++  G +H FL GDR 
Sbjct: 562 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 621

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HPQ  +I   L++++ KL+  GY PD   V  D+  EEKE  L  HSEKLA+AFG++   
Sbjct: 622 HPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTV 681

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P   I I+KNLR+C DCHTA KFIS+  DREIVVRD  RFHHF+ G CSC D+W
Sbjct: 682 PGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/546 (22%), Positives = 239/546 (43%), Gaps = 118/546 (21%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  N F +N+++    +     +A+  +  M   ++  +  T+P   ++ +  L +  
Sbjct: 111 YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 170

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+  H   L  GF+ D++V++ L++MY+ CG+L  AR LFDE    ++VSW S++ GYV 
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230

Query: 210 ADNVEEAKFIY------------------------------NKMPERNII---------- 229
            D+   A  ++                              +++ E++I           
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR 290

Query: 230 -------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                    N+++  + + G +  + R+F  M ++D++SW+++I+ Y QN M  E++ +F
Sbjct: 291 GFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIF 350

Query: 283 MNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
             M+ D  +  + V + +VL ACA+    + G  +H   +K+G+E  + +  ++I MY  
Sbjct: 351 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK 410

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG++  A K FD     ++ SW++M+                               +GY
Sbjct: 411 CGKVEMARKAFDRMREKNVKSWSAMV-------------------------------AGY 439

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKIN 460
             H    E L +F EM   G++P+  T VSV++AC+H   L++G  W  A          
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA---------- 489

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                           + +  +V     E GV  +  ++      G   ++ ++   MK 
Sbjct: 490 ----------------MSHEFDV-----EPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK- 527

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579
             + P+ + +  +LGACR    VD G      + +   L+P N  +Y  + ++   AG  
Sbjct: 528 --LRPDFVVWGALLGACRMHKNVDLGEISARKLFE---LDPKNCGYYVLLSNIYADAGRW 582

Query: 580 KEAEEL 585
           ++ E +
Sbjct: 583 EDVERM 588



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 188/398 (47%), Gaps = 29/398 (7%)

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF-KEMPKKDLVSWSALISCYEQN 272
           E   F ++   +R  I + +  VL  R  N      LF K + K ++ SW+++I+   ++
Sbjct: 73  EHTAFQFSGFSKRRSICAGA--VLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARS 130

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL  F +M    +  +       + +C+ L  + +G   H  A+  G E  + + 
Sbjct: 131 GDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVS 190

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           +AL+ MYS CGE+  A  LFD   + +++SW SMI+GY++     +A  LF   + ++  
Sbjct: 191 SALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEE-- 248

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                 SG     +               +  D   +VSV+SAC+ +      + +H ++
Sbjct: 249 ------SGSEGDGE---------------VCVDPIAMVSVLSACSRVSEKSITEGVHGFL 287

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G + +  +  TL+D Y K G +  +  VF G  E+ V SWN++I  +A NG++ +S+
Sbjct: 288 IKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESM 347

Query: 513 EMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           E+F  M K G +  N +T   VL AC H G    G +  +  + +  LE N      ++D
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSIID 406

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  + G ++ A +  + M    +V +W A++     HG
Sbjct: 407 MYCKCGKVEMARKAFDRM-REKNVKSWSAMVAGYGMHG 443



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 130/583 (22%), Positives = 240/583 (41%), Gaps = 100/583 (17%)

Query: 24  FKPTINLSILETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
            KP  N S     ++ C +        Q   Q ++ G   D F +S L+   +      E
Sbjct: 148 LKP--NRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG---E 202

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN--------- 131
           +  +  +F  +   N   + +M+  Y+Q +   +A+ L+K  L    G +          
Sbjct: 203 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262

Query: 132 -YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
                L A +     S+ EG  +H  ++K GF+ D+ V NTL++ YA CG+L  +R++FD
Sbjct: 263 AMVSVLSACSRVSEKSITEG--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-------------------------- 224
                D++SWNSI+A Y       E+  I+++M                           
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380

Query: 225 --------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                         E N+    S+I ++ + G V  A + F  M +K++ SWSA+++ Y 
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-----TSVHALAVKIGI 325
            +   +EAL +F  M    V  + +  VSVL+AC++  +++ G        H   V+ G+
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--DLISWNSMISGYLKCGSVE----KA 379
           E Y      ++ +    G +  A  L   G  L  D + W +++       +V+     A
Sbjct: 501 EHY----GCMVDLLGRAGYLKEAFDLIK-GMKLRPDFVVWGALLGACRMHKNVDLGEISA 555

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTH 438
           R LF+ +  K+   +  + + YA   ++ +   + + M++ G ++P   +LV +      
Sbjct: 556 RKLFE-LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHV 614

Query: 439 LVALD----QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGV 492
            +  D    Q + I+ Y+ K  +K+  +            G V +   V H  G EEK +
Sbjct: 615 FLVGDREHPQHEKIYEYLEKLSMKLQEV------------GYVPDMTSVLHDVGHEEKEM 662

Query: 493 ---SSWNALIIGFA-MNGLADKSLEMFSEMKKSGVTPNEITFV 531
                   L + F  MN +   ++ +   ++  G     I F+
Sbjct: 663 VLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFI 705


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/516 (45%), Positives = 333/516 (64%), Gaps = 31/516 (6%)

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC-- 342
           M++ + + ++     VL ACA +  +  G SVH   +K G    +N+QN L+HMY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           GE                             G +E AR +FD M + D VSWS MI GY 
Sbjct: 61  GE-----------------------------GGIEFARKVFDEMYKSDSVSWSAMIGGYV 91

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           +  + S+ ++LF EMQ  G+ PDE T+VSV+SACT L AL+ GKW+ +Y+ K  ++ N  
Sbjct: 92  RVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVE 151

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           L   LIDM+ K G VD A  +F    E+ + SW ++I G AM+G   +++ +F EM +SG
Sbjct: 152 LSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG 211

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           VTP+++ F+G+L AC H GLVD+G R+F+SM ++  + P  +HYGCMVD+L RAG++KEA
Sbjct: 212 VTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEA 271

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            + ++ MP+ P+   W  L+ AC+ HG+ ++GE++ R+L+  +P H+  +VLLSNI+A  
Sbjct: 272 LKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKM 331

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
             W+    +R  M  +G+ KIPG +MIE +  I+EF+AGD++H Q  EI  M+DEM K++
Sbjct: 332 SDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEM 391

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY P T EV  DID E+KE TL RHSEKLAIAF L+   P   IRI+KNLR+C+DCH
Sbjct: 392 KRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCH 451

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +A+KFIS+ ++REIVVRDR+RFHHFK+G CSC DFW
Sbjct: 452 SASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 155/354 (43%), Gaps = 68/354 (19%)

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           G +G +  A ++F EM K D VSWSA+I  Y +     +A+ LF  M    V  DE+ +V
Sbjct: 60  GGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMV 119

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           SVLSAC  L  ++ G  V +   K  ++  + L NALI M++ CG++  A  LF +    
Sbjct: 120 SVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           +++SW S+I                                G A H +  E +++F EM 
Sbjct: 180 NIVSWTSVI-------------------------------GGLAMHGRGVEAVAVFEEMV 208

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G+ PD+   + ++SAC+H   +D+GK     +RK+          +++      GC+ 
Sbjct: 209 RSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKD---------FSIVPKIEHYGCMV 259

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           + L                        GL  ++L+   EM    + PN + +  ++ ACR
Sbjct: 260 DML---------------------CRAGLVKEALKFVQEMP---IDPNPVVWRTLINACR 295

Query: 539 HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
             G +  G +    +I   R EP +  +Y  + ++  +    ++   + E+M M
Sbjct: 296 AHGELKLGEKITRQLI---RNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDM 346



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 43/235 (18%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC-- 179
           ML      + +TYP + +A A   ++  GK +H  V+K GF  +V V NTL++MY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 180 --GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------------- 224
             G +  ARK+FDE    D VSW++++ GYV      +A  ++ +M              
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 225 --------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                     ++N+  SN++I +F + G+V +A  LF+ M +++
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +VSW+++I     +    EA+ +F  M+   V  D+VV + +LSAC++  +V  G
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKG 235



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           + ++ K+F  +   +   ++ M+  Y++      AI L++ M    V  D  T   +  A
Sbjct: 65  IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                ++  GK +  +V K     +V ++N LI+M+A CGD+  A  LF      ++VSW
Sbjct: 125 CTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG------RKGNVAEACRLFKEM 254
            S++ G        EA  ++ +M    +   +  +V  G        G V +  R F  M
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDD--VVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 255 PK 256
            K
Sbjct: 243 RK 244


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/753 (34%), Positives = 407/753 (54%), Gaps = 71/753 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  LE  + F +  M+  Y Q+    +A+ ++  M   +V     TY  +  A A   
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ +G  IH  +L+ GF+ DV+V   LINMY  CG +  A   F      D+VSW +++A
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
             V  D    A+++Y +M                                        E 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMES 239

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   NS + +FG  G + +A RLF++M  +D+V+W+ +I+ Y QNE + EA+ LF  + 
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V  +++  V +L+   +LT +  G  +H L  + G +    +  AL+ +Y  C    
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A K+F    + D+I+W  M                                  YAQ+  
Sbjct: 360 QAWKIFVDMGSKDVITWTVM-------------------------------CVAYAQNGF 388

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF EMQ  G RP  ATLV+V+  C HL AL +G+ IH++I +N  ++  ++ T 
Sbjct: 389 RKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETA 448

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI+MY K G +  A+ VF    ++ +  WN+++  +A +G  D++L++F++M+  GV  +
Sbjct: 449 LINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKAD 508

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ++FV VL A  H G V +G+++F +M+Q+  + P  + YGC+VDLLGRAG ++EA +++
Sbjct: 509 AVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIV 568

Query: 587 ESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
             +    PD   W  LLGAC+ H   +  +    +++E  P H G +V+LSN++A+ G W
Sbjct: 569 LKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDW 628

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           D V  +R +M  RGV K PG S IE    +HEFL GDR+HP+ + I   LD +  +++  
Sbjct: 629 DGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAA 688

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  +  D++ E KE  LF HSE+LAIAFGLI+  P  P+R++KNLR+C+DCHTA 
Sbjct: 689 GYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTAT 748

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K+IS+   REI+VRD HRFH+FK G CSC D+W
Sbjct: 749 KYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 200/405 (49%), Gaps = 37/405 (9%)

Query: 209 NADNVEEAKFIY----NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +A NV+  + ++    ++  E+N +    +I ++ + G+V EA ++F+ + +KD+ +W+ 
Sbjct: 16  SAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTR 75

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I  Y Q   Y+ AL +F  M +  VM  +V  V++L+ACA+   +K G  +H   ++ G
Sbjct: 76  MIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQG 135

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            E  + +  ALI+MY+ CG +  A   F    + D++SW +MI+  +             
Sbjct: 136 FEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV------------- 182

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                             QHDQF+    L+  MQ  G+ P++ TL +V +A      L +
Sbjct: 183 ------------------QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK+++  +    ++ +  +  + ++M+   G + +A  +F    ++ V +WN +I  +  
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           N    +++ +F  +++ GV  N+ITFV +L     +  + +G +  + +++E   + ++ 
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAV 343

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               ++ L GR     +A ++   M  S DV TW  +  A  ++G
Sbjct: 344 VATALMSLYGRCEAPGQAWKIFVDMG-SKDVITWTVMCVAYAQNG 387



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 158/353 (44%), Gaps = 40/353 (11%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D    V++L  C++   V  G  VH      G E     QN L+     CG         
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFE-----QNNLV-----CGH-------- 44

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                        +I  Y +CGSV +A+ +F+ +  KDV +W+ MI  Y Q   +   L 
Sbjct: 45  -------------LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALG 91

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +F +MQ   + P + T V++++AC    +L  G  IH  I + G + +  +GT LI+MY 
Sbjct: 92  MFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYN 151

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G V  A + F   E + V SW A+I     +     +  ++  M+  GV PN+IT   
Sbjct: 152 KCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 211

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           V  A      + EG +    ++    +E + +     V++ G AG+L +A  L E M + 
Sbjct: 212 VFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VD 269

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHAS 641
            DV TW  ++    +  +   GE V R    LQ D    +D   VL+ N++ S
Sbjct: 270 RDVVTWNIVITLYVQ--NENFGEAV-RLFGRLQQDGVKANDITFVLMLNVYTS 319



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 103/199 (51%), Gaps = 2/199 (1%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +PD A  V+++  C+    +D G+ +H ++R  G + N+++   LI MY + G V  A +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   E K V +W  +I  +   G  D++L MF +M++  V P ++T+V +L AC     
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           + +G      ++Q+   E +      ++++  + G ++ A +  + +    DV +W A++
Sbjct: 121 LKDGMEIHGQILQQG-FEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 178

Query: 603 GACKKHGDHEMGERVGRKL 621
            AC +H    +   + R++
Sbjct: 179 AACVQHDQFALARWLYRRM 197



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++KIF  + S +   +  M  AY Q    ++A+ L++ M        + T   +    A 
Sbjct: 361 AWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAH 420

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++ +G+ IH H+++  F  ++ V   LINMY  CG ++ A  +F++    D++ WNS+
Sbjct: 421 LAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSM 480

Query: 204 LAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
           L  Y      +E   ++N+M     + + ++  S++      G+V +  + F  M
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAM 535


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 280/816 (34%), Positives = 431/816 (52%), Gaps = 93/816 (11%)

Query: 29  NLSILETHLQKCQSFKQFTQILSQMILTGLIADTF---AASRLIKFSTDLLPFIE---MS 82
           N S  +    K   FK+ T   S  I       +F   A    +  + DL  F+E   M 
Sbjct: 16  NASPEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLCGFVESGLMG 75

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
            +  +F  +   + FI+N ++R Y    + Q+AI  Y  M    +  DN+T+P + +A  
Sbjct: 76  NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACG 135

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
             L++  G+ +H  ++K GFD DVYV N LI+MY   G +  A K+FDE PV DLVSWNS
Sbjct: 136 ELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNS 195

Query: 203 ILAGY-VNADNV------EEAKFIYNKMP------------------------------- 224
           +++GY ++ D +      +E   + NK                                 
Sbjct: 196 MVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSE 255

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            E +I+   S+I ++G+ G V  A R+F  +  K++V+W+A+I   ++            
Sbjct: 256 LELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE------------ 303

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
              D +V+ D + ++++L +C+    +  G S+H  A++     Y+ L+ AL+ MY    
Sbjct: 304 ---DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYG--- 357

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                                       KCG ++ A  +F+ M EK++VSW+TM++ Y Q
Sbjct: 358 ----------------------------KCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQ 389

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           ++Q+ E L +F  + +  ++PD  T+ SV+ A   L +  +GK IH+YI K GL  N+ +
Sbjct: 390 NEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFI 449

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              ++ MY K G +  A E F G   K V SWN +I+ +A++G    S++ FSEM+  G 
Sbjct: 450 SNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGF 509

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PN  TFV +L AC   GL+DEG   FNSM  E+ ++P  +HYGCM+DLLGR G L EA+
Sbjct: 510 KPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAK 569

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
             IE MP+ P    WG+LL A + H D  + E   R ++ L+ D+ G +VLLSN++A  G
Sbjct: 570 CFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAG 629

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RW+DV  ++ +M  +G+VK  GCSM++ NG    F+  DR+H   N I ++LD + KK+ 
Sbjct: 630 RWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIG 689

Query: 704 LEGYAPDTLEV-AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
            + Y     +    D+ ++   +  + HS KLAI FGLI+ +  NP+ + KN RIC+DCH
Sbjct: 690 EDIYLHSLTKFRPLDVAKKRGNSPEY-HSVKLAICFGLISTAIGNPVIVRKNTRICDDCH 748

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            AAK IS+   REIVV D   FHHF+ G CSC D+W
Sbjct: 749 RAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 371/653 (56%), Gaps = 35/653 (5%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H  V+K G  S V V N+++ MY  CGD                            
Sbjct: 366 GRKVHPFVVKLGLSSCVPVANSVLYMYGKCGD---------------------------- 397

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
               E A+ ++ +M  R++ + N M+ L+  +G +  A  +F+ M ++ +VSW+ +I+ Y
Sbjct: 398 ---AETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGY 454

Query: 270 EQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            QN +   AL  F  M+    M  D   V SVLSACANL ++K G  +H+  ++ G+ C 
Sbjct: 455 NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCS 514

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAG--HNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + NALI  Y+  G + TA ++ D     +L++IS+ +++ GY+K G  ++AR +FD M
Sbjct: 515 SQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIM 574

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +DV++W+ MI GY Q+ Q  E + LF  M   G  P+  TL +V+SAC  L  LD GK
Sbjct: 575 NNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGK 634

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALIIGFAMN 505
            IH    ++  + +  +   +I +Y + G V  A  VF      K   +W ++I+  A +
Sbjct: 635 QIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL ++++ +F EM + GV P+ IT+VGVL AC H G VD+G R++  M  EH + P   H
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDL  RAG+L EA E I+ MP++PD   WG+LL AC+   + ++ E    KL+ + 
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSID 814

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P + G +  L+N++++ GRW+D   +  +   +GV K  G S     G +H F A D  H
Sbjct: 815 PHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLH 874

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ + I     EM +++K  G+ PD   V  D+D E KE  L RHSEKLAIAFGLI+   
Sbjct: 875 PQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 934

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +RIMKNLR+CNDCHTA KFIS+  DREI+VRD  RFHHF+ G CSC D+W
Sbjct: 935 KTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 258/544 (47%), Gaps = 72/544 (13%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  L Q     ++   G+ IH H +KAG     Y+ N L+  YA  G    +R  F    
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVG---VSRGCF---- 264

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLF 251
                                EA+ +++ +P   RN    NS++ L+ + G + +A  +F
Sbjct: 265 --------------------REARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVF 304

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            EMP +D VSW+ +I    ++  + +A+  F++M+       +  + +VLS+CA +    
Sbjct: 305 AEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACG 364

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH   VK+G+   + + N++++MY  CG+  TA  +F+      + SWN M+S Y 
Sbjct: 365 VGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYT 424

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLV 430
             G +E A ++F+ M+E+ +VSW+T+I+GY Q+      L  F  M     + PD  T+ 
Sbjct: 425 HQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVT 484

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLK-------------------------------- 458
           SV+SAC +L  L  GK +H+YI + G+                                 
Sbjct: 485 SVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVA 544

Query: 459 -INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
            +N I  T L++ Y+KLG    A E+F     + V +W A+I+G+  NG  D+++E+F  
Sbjct: 545 DLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRS 604

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSM--IQEHRLEPNSKHYGCMVDLLG 574
           M   G  PN  T   VL AC  +  +D G + H  ++  +QE  +  ++     ++ +  
Sbjct: 605 MILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSN----AIITVYA 660

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFH 632
           R+G +  A  + + +    +  TW +++ A  +HG  E    +  ++V   ++PDH  + 
Sbjct: 661 RSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYV 720

Query: 633 VLLS 636
            +LS
Sbjct: 721 GVLS 724



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 143/332 (43%), Gaps = 35/332 (10%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS---YSFKIFAFLESPN 95
           K  S +   +I+ Q ++  L         +I F+  L  ++++     + +IF  + + +
Sbjct: 527 KSGSVETARRIMDQAVVADL--------NVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +  M+  Y Q     +A+ L++ M+      +++T   +  A A    +  GK IH 
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVE 214
             +++  +  V V+N +I +YA  G +  AR++FD+     + ++W S++         E
Sbjct: 639 KAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 215 EAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSAL 265
           +A  ++ +M    +    I    ++      G V +  R +++M  +      +  ++ +
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC-----ANLTVVKAGTSVHALA 320
           +  + +  +  EA      M    V  D VV  S+L+AC     A+L  + AG  +    
Sbjct: 759 VDLHARAGLLTEAHEFIQRMP---VAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDP 815

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
              G        +AL ++YS+CG    A +++
Sbjct: 816 HNSGA------YSALANVYSACGRWNDAARIW 841


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/763 (34%), Positives = 415/763 (54%), Gaps = 75/763 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + ++F  + +P+   +N ++RAY  R     AI LY+ ML   V  + YT+P + +
Sbjct: 48  QLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLK 107

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +    +  G+ IH H    G  +D++V+  LI++Y  C     A  +F + P+ D+V+
Sbjct: 108 ACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVA 167

Query: 200 WNSILAGYVNADNVEE-----------------AKFIYNKMP------------------ 224
           WN++LAGY N                       A  + + +P                  
Sbjct: 168 WNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYC 227

Query: 225 --------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                   E  ++   +++ ++ +  ++  ACR+F  M  ++ V+WSALI  +   +   
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMT 287

Query: 277 EALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EA  LF +M ++    +    V S L  CA+L  ++ GT +HAL  K GI   +   N+L
Sbjct: 288 EAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSL 347

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+  G I  A  LFD     D IS+ +++SGY++ G  E                  
Sbjct: 348 LSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAE------------------ 389

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                        E   +F +MQ   ++PD AT+VS+I AC+HL AL  G+  H  +   
Sbjct: 390 -------------EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIR 436

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           GL + + +  +LIDMY K G +D + +VF     + + SWN +I G+ ++GL  ++  +F
Sbjct: 437 GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLF 496

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK  G  P+++TF+ ++ AC H GLV EG   F++M  ++ + P  +HY CMVDLL R
Sbjct: 497 LSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 556

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G L EA + I+SMP+  DV  WGALLGAC+ H + ++G++V R + +L P+  G  VLL
Sbjct: 557 GGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLL 616

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI ++ GR+D+  EVR +   +G  K PGCS IE NG +H F+ GD++HP   +I + L
Sbjct: 617 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHEL 676

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           D +   +K  GY  DT  V  D+++EEKE  L  HSEKLAIAFG+++++    I + KNL
Sbjct: 677 DNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 736

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCHTA K+++   +R I+VRD +RFHHFK+G CSC DFW
Sbjct: 737 RVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 183/394 (46%), Gaps = 40/394 (10%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +G +A A ++F  +P  D  +++ALI  Y     +  A+ L+ +M+  RV  ++     V
Sbjct: 46  RGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFV 105

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC+ L  + AG ++HA A  +G+   + +  ALI +Y  C     A  +F      D+
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN+                               M++GYA H  +   ++  ++MQ  
Sbjct: 166 VAWNA-------------------------------MLAGYANHGMYHHAIAHLLDMQDR 194

Query: 421 -GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS---ILGTTLIDMYMKLGC 476
            G+RP+ +TLVS++       AL QG  +HAY  +  L  N    ++GT L+DMY K   
Sbjct: 195 GGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKH 254

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG-VLG 535
           +  A  VFHG   +   +W+ALI GF +     ++  +F +M   G+     T V   L 
Sbjct: 255 LVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALR 314

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C  +  +  G    ++++ +  +  +      ++ +  +AG++ EA  L + + +  D 
Sbjct: 315 VCASLADLRMG-TQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIK-DT 372

Query: 596 ATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
            ++GALL    ++G  E    V +K+    +QPD
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPD 406



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 6/246 (2%)

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           W   +  ++  G +  AR +FD +   D  +++ +I  Y+    F   + L+  M +  +
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
            P++ T   V+ AC+ L  L  G+ IHA+    GL  +  + T LID+Y++      A  
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMG 541
           VF     + V +WNA++ G+A +G+   ++    +M+ + G+ PN  T V +L      G
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHY---GCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            + +G       ++ + L+ N +       ++D+  +   L  A  +   M +  +V TW
Sbjct: 216 ALFQGTSVHAYCLRAY-LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV-TW 273

Query: 599 GALLGA 604
            AL+G 
Sbjct: 274 SALIGG 279


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/633 (40%), Positives = 376/633 (59%), Gaps = 66/633 (10%)

Query: 231 SNSMIVLFG--RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           S+ ++ L+   R  N+  A  LF  + +  LVSW+ LI CY +N+   +A+ LF  ++  
Sbjct: 50  SSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCD 109

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI---------------EC-YINL- 331
            V  D   +  VL  CA L  ++ G  +H L +KIG                +C  I L 
Sbjct: 110 FV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELC 168

Query: 332 --------------QNALIHMYSSCGEITTAEKLFDAGHNLDL----------------- 360
                          N+LI  Y+ CGEI  A ++F+     D                  
Sbjct: 169 RKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLE 228

Query: 361 --------------ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                         +SWN+MI+GY+K G    A+ LFD M E+ +V+W++MI+GY ++ Q
Sbjct: 229 AARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQ 288

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           F++ L LF  M    I P+  T++  +SA + +V+L  G+W+H+YI K+G K + +LGT 
Sbjct: 289 FTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTL 348

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI+MY K G V +AL VF    +K +  W ++I+G  M+GL +++LE+F EM ++G+ P+
Sbjct: 349 LIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPH 408

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITF+GVL AC H G  ++ HR+F  M  ++ ++P+ +HYGC++D+L RAG L+EA++ I
Sbjct: 409 AITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTI 468

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E MP+  +   W +LL   +KHG+  MGE   + L++L PD  G +V+LSN++A+ G W+
Sbjct: 469 ERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWE 528

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V +VR MM ++G+ K PGCS IE  G IHEF+ GD++HPQ  EI   L EM KKL + G
Sbjct: 529 KVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAG 588

Query: 707 YAPDTLEVAFDIDQE-EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           + PDT +V   ++++ EKE  L  HSE+LAIAFGL+ I   +PIRI+KNLRICNDCH   
Sbjct: 589 HIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVT 648

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S  ++REI++RD  RFHHFK GSCSC DFW
Sbjct: 649 KLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/531 (26%), Positives = 247/531 (46%), Gaps = 75/531 (14%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI 69
           LS T+  S+  +P   P ++       LQ C + ++  Q+ +  I T  +     +SRL+
Sbjct: 2   LSPTLSHSL--QPFLPPNLHFP-----LQNCGTEREANQLHALSIKTASLNHPSVSSRLL 54

Query: 70  KFSTDLLPFIE-MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
               D  P I  + Y+  +F +++ P    +N +++ YI+      AI L+  +L + V 
Sbjct: 55  ALYAD--PRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP 112

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            D++T P + +  A   ++ EGK IH  VLK GF  D +V ++L++MY+ CG++   RK+
Sbjct: 113 -DSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171

Query: 189 FDESPVLDLVSWNSILAGYVNADNVE-------------------------------EAK 217
           FD     D+VSWNS++ GY     +E                                A+
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
            ++++MP RN ++ N+MI  + + G+   A  LF +MP++ LV+W+++I+ YE+N+ + +
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL LF  M+   +  +   ++  +SA + +  +  G  VH+  VK G +    L   LI 
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS CG + +A ++F +     L  W S+I G    G VE                    
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVE-------------------- 391

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYIRKNG 456
                      +TL LF EM   G++P   T + V++AC+H   A D  ++        G
Sbjct: 392 -----------QTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYG 440

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG 506
           +K +      LID+  + G ++ A +       K     W +L+ G   +G
Sbjct: 441 IKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHG 491


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/809 (32%), Positives = 424/809 (52%), Gaps = 76/809 (9%)

Query: 32  ILETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           +  + L  C   K F    Q+ + +   G   +T+  + L+   + +  F+      K+F
Sbjct: 215 VFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE---KVF 271

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
           + ++S +   FN+++    Q+     A+ L+  M  + +  D  T   L  A A   ++ 
Sbjct: 272 SKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALC 331

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +G+ +H +V+KAG  SD+ V   L+++Y  C D+  A ++F  +   ++V WN +L  + 
Sbjct: 332 KGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFG 391

Query: 209 NADNVEEAKFIYNKMP---------------------------------------ERNII 229
             DN+ E+  I+ +M                                        + N+ 
Sbjct: 392 KLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVY 451

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             + +I ++ + G +  A  + + + + D+VSW+ALIS Y Q+ ++ EAL  F  M++  
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRG 511

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D +   S +SACA +  +  G  +HA       + Y+                    
Sbjct: 512 IQSDNIGFSSAISACAGIQALNQGRQIHA-------QSYV-------------------- 544

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
               +G++ DL   N+++S Y +CG +++A   F+ +  KD +SW+ +ISG+AQ     +
Sbjct: 545 ----SGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCED 600

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L +F +M    +     T  S +SA  ++  + QGK IHA I K G   +  +   LI 
Sbjct: 601 ALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALIT 660

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            Y K G +++A   F    EK   SWNA+I G++ +G  ++++ +F +MK+ G  PN +T
Sbjct: 661 FYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVT 720

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           FVGVL AC H+GLV +G  +F SM +EH L P   HY C+VDL+ RAG L  A + IE M
Sbjct: 721 FVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEM 780

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD   W  LL AC  H + E+GE   + L+EL+P+    +VLLSN++A  G+WD   
Sbjct: 781 PIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRD 840

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           + R MM  RGV K PG S IE    +H F  GDR HP  ++I   L E+ KK    GY  
Sbjct: 841 QTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQ 900

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           D   +  D++QE+K+ T++ HSEKLAI FGL+++S   PI +MKNLR+C DCH+  KF+S
Sbjct: 901 DRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVS 960

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +  +R I+VRD +RFHHF+ G CSC D+W
Sbjct: 961 KISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 257/563 (45%), Gaps = 77/563 (13%)

Query: 90  FLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLS 146
           F + PN  +  ++ ++  ++++ +  + + L+  M+  NV     ++  +L   S  R+ 
Sbjct: 68  FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG 127

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +   + IH  ++  G      ++N LI +YA  G + +ARK+FD     D VSW ++++G
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISG 187

Query: 207 YVNADNVEEAKFIYNKM------PERNIIAS----------------------------- 231
           +      EEA  ++ +M      P   + +S                             
Sbjct: 188 FSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLE 247

Query: 232 ----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               N+++ L+ R  N   A ++F +M  KD VS+++LIS   Q    + AL LF  M  
Sbjct: 248 TYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKR 307

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  D V V S+LSACA+   +  G  +H+  +K GI   + ++ AL+ +Y +C +I T
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++F      +++ WN                                M+  + + D  
Sbjct: 368 AHEMFLTAQTENVVLWN-------------------------------VMLVAFGKLDNL 396

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           SE+  +F +MQ  G+ P++ T  S++  CT + ALD G+ IH  + K G + N  + + L
Sbjct: 397 SESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVL 456

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G +D A  +     E  V SW ALI G+A + L  ++L+ F EM   G+  + 
Sbjct: 457 IDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDN 516

Query: 528 ITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           I F   + AC  +  +++G + H  S +  +  + +  +   +V L  R G +KEA    
Sbjct: 517 IGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGN--ALVSLYARCGRIKEAYLEF 574

Query: 587 ESMPMSPDVATWGALLGACKKHG 609
           E +  + D  +W  L+    + G
Sbjct: 575 EKID-AKDSISWNGLISGFAQSG 596



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 170/714 (23%), Positives = 293/714 (41%), Gaps = 139/714 (19%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ E K +H  +LK GF ++  + N L+++Y   GDL    K+F++ P   + SW+ I++
Sbjct: 25  SLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIIS 84

Query: 206 GYVNADNVEEAKFIYNKMPERNI------------------------------------- 228
           G++          +++ M E N+                                     
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLL 144

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
              I SN +I L+ + G +  A ++F  +  KD VSW A+IS + QN   EEA+ LF  M
Sbjct: 145 CSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM 204

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               +     V  SVLS C  + +   G  +HAL  K G      + NAL+ +YS     
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
            +AEK+F    + D +S+NS+ISG  + G  + A                          
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGA-------------------------- 298

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                L LF +M+   ++PD  T+ S++SAC    AL +G+ +H+Y+ K G+  + I+  
Sbjct: 299 -----LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEG 353

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+D+Y+    +  A E+F   + + V  WN +++ F       +S  +F +M+  G+ P
Sbjct: 354 ALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIP 413

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N+ T+  +L  C  +G +D G +    +I+    + N      ++D+  + G L  A  +
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTG-FQFNVYVCSVLIDMYAKHGKLDTAHVI 472

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS------- 636
           + ++    DV +W AL+    +H       +  ++++   +Q D+ GF   +S       
Sbjct: 473 LRTLT-EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA 531

Query: 637 -----NIHAS---KGRWDDV--------LEVRGMMVRRGVV---KIPGCSMIEANGIIHE 677
                 IHA     G  +D+        L  R   ++   +   KI     I  NG+I  
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F                           GY  D L+V   +++ + E + F     ++ A
Sbjct: 592 FAQ------------------------SGYCEDALKVFAQMNRAKLEASFFTFGSAVSAA 627

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
             +  I     I  M               I R FD +I V +     + K GS
Sbjct: 628 ANIANIKQGKQIHAM--------------IIKRGFDSDIEVSNALITFYAKCGS 667



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 200/419 (47%), Gaps = 38/419 (9%)

Query: 208 VNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           +N+ ++ E K ++ K+ +       +  N ++ ++   G++    ++F++MP + + SW 
Sbjct: 21  LNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWD 80

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVK 322
            +IS + + +M    L LF  MI+  V   E+   SVL AC+   + ++    +HA  + 
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIIC 140

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G+ C   + N LI +Y+  G I +A                               R +
Sbjct: 141 HGLLCSPIISNPLIGLYAKNGLIISA-------------------------------RKV 169

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD +  KD VSW  MISG++Q+    E + LF EM   GI P      SV+S CT +   
Sbjct: 170 FDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLF 229

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           D G+ +HA + K G  + + +   L+ +Y ++    +A +VF   + K   S+N+LI G 
Sbjct: 230 DVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGL 289

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           A  G +D +LE+F++MK+  + P+ +T   +L AC   G + +G +  +S + +  +  +
Sbjct: 290 AQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSD 348

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
               G ++DL      +K A E+  +   + +V  W  +L A  K  +     R+ R++
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLT-AQTENVVLWNVMLVAFGKLDNLSESFRIFRQM 406



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 154/367 (41%), Gaps = 66/367 (17%)

Query: 286 IDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           ++HR +  +    + +L  C N   +     +H   +K+G      L N L+ +Y + G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +    K+F+   N  + SW+ +ISG+++     +   LF  MIE++V             
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENV------------- 107

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACT-HLVALDQGKWIHAYIRKNGLKINSIL 463
                              P E +  SV+ AC+ H + +   + IHA I  +GL  + I+
Sbjct: 108 ------------------SPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPII 149

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              LI +Y K G + +A +VF     K   SW A+I GF+ NG  ++++ +F EM  +G+
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHF---------------NSMIQEHRLEPN------ 562
            P    F  VL  C  + L D G +                 N+++  +   PN      
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK 269

Query: 563 --SK-------HYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALLGACKKHGD 610
             SK        +  ++  L + G    A EL   M    + PD  T  +LL AC  +G 
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329

Query: 611 HEMGERV 617
              GE++
Sbjct: 330 LCKGEQL 336


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 289/860 (33%), Positives = 447/860 (51%), Gaps = 124/860 (14%)

Query: 2   TLATKLAHLSSTIKSSVNAKPIFKPT---------INLSILETHLQKC---QSFKQFTQI 49
           + +    H ++TIK   N     KPT         +N     + +Q C    SF++   I
Sbjct: 34  SFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSI 93

Query: 50  LSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
            +QMI  G   D +  ++++          ++ Y+ K+F  +   N   +NTM+ AY + 
Sbjct: 94  HTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARV 153

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL-----SVFEGKLIHDHVLKAGFDS 164
           +   +A  ++  ML   V  DN+T+     ASALR+     S   GK +H  ++  GF  
Sbjct: 154 DDYMEAWGIFDRMLKIGVCPDNFTF-----ASALRVCGALRSRDGGKQVHSKLIACGFKG 208

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D +V N LI+MYA C D  +  K+FDE    + V+WNSI++      +  +A  ++ +M 
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 268

Query: 225 E-----------------------------------------RNIIASNSMIVLFGRKGN 243
           E                                         +NII    ++ ++   G 
Sbjct: 269 ESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 328

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A  +F  M +++  SW+++I  Y+QN   +EAL LF  M  + +  D   + S+LS+
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C +L+  + G  +H   V+  +E    LQ  L+ MY+                       
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYA----------------------- 425

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKD--VVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                   KCGS++ A  ++D  I+KD     W+++++GYA      E+ + F+EM    
Sbjct: 426 --------KCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESD 477

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           I  D  T+V++++                           +L T L+DMY K G +  A 
Sbjct: 478 IEYDVLTMVTIVNLL-------------------------VLETALVDMYSKCGAITKAR 512

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            VF     K + SWNA+I G++ +G + ++L ++ EM K G+ PNE+TF+ +L AC H G
Sbjct: 513 TVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG 572

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           LV+EG R F SM +++ +E  ++HY CMVDLLGRAG L++A+E +E MP+ P+V+TWGAL
Sbjct: 573 LVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGAL 632

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           LGAC+ H D +MG    ++L EL P + G +V++SNI+A+ GRW +V ++R MM  +GV 
Sbjct: 633 LGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVK 692

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT---LEVAFDI 718
           K PG S IE N  I  F AG +THP+  EI N L  +  + K  GY PDT   L+   DI
Sbjct: 693 KDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDI 752

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            +EE+E  L +HSE+LA++ GLI++   + IR+ KNLRIC DCHTA KFIS+   R I+ 
Sbjct: 753 KEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIA 812

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF++G CSC D+W
Sbjct: 813 RDTNRFHHFENGKCSCGDYW 832


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 397/712 (55%), Gaps = 42/712 (5%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLML--NNNVGVDNYTYPLLAQASAL--RLSVFEGKLI 153
           + N M+ A+ + ++   A+ +++ +L  ++++  D+Y++  L  A      L+V     +
Sbjct: 124 LHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQL 183

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVC---GDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           H  V K G  + + V+N LI +Y  C   G    ARK+ DE                   
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDE------------------- 224

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                       MPE++ +   +++V   RKG+V  A   F+E+  +  V W+A+IS Y 
Sbjct: 225 ------------MPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI----E 326
           Q+ M  EA  LF  M+  R+  DE    S+LSACAN      G SVH   +++      E
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + NAL+ +YS  G+I  A K+FD+    D++SWN+++SGY++ G ++ A  +F  M
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM 392

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             K  +SW  M+SGY       + L LF +M+   ++P + T    ++AC  L AL  GK
Sbjct: 393 PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGK 452

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +HA++ + G + ++  G  L+ MY + G V +A  VF         SWNA+I     +G
Sbjct: 453 QLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHG 512

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++LE+F +M   G+ P+ I+F+ +L AC H GLVD+G ++F SM ++  + P   HY
Sbjct: 513 HGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHY 572

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
             ++DLLGRAG + EA +LI++MP  P  A W A+L  C+ +GD E+G     +L ++ P
Sbjct: 573 ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVP 632

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
           +HDG ++LLSN +++ GRW D   VR +M  RGV K PGCS IE    +H FL GD  HP
Sbjct: 633 EHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHP 692

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
             +E+   L+ +  K++  GY PDT     D+   EKE  LF HSE+LA++FGL+ +   
Sbjct: 693 DAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAG 752

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             + ++KNL+IC DCHTA  F+SRA  REIVVRD  RFHHFK G CSC ++W
Sbjct: 753 ATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 46/330 (13%)

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA--MIEKDVV 392
           L+H+Y+   ++ T   LF A  +   ++  S++S Y   G +  + A FD+  +  +D V
Sbjct: 66  LLHLYTLSPDLATPAVLFRA--DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTV 123

Query: 393 SWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISAC--THLVALDQGKWI 448
             + MIS +A+    +  +S+F  +      +RPD+ +  S++SA    H +A+     +
Sbjct: 124 LHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQL 183

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKL---GCVDNALEVFHGTEEKGVSS----------- 494
           H  + K G      +   LI +YMK    G   +A +V     EK   +           
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRK 243

Query: 495 --------------------WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
                               WNA+I G+  +G+  ++ E+F  M    + P+E TF  +L
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303

Query: 535 GACRHMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            AC + G    G   H  F  +  +   E        +V L  ++G +  A ++ +SM +
Sbjct: 304 SACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL 363

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKL 621
             DV +W  +L    + G  +   R+ +++
Sbjct: 364 K-DVVSWNTILSGYIESGCLDNAARIFKEM 392



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 57/306 (18%)

Query: 9   HLSSTIKSSVNAKPIFKPTINLSI---LETHLQKCQSFKQFTQILSQMILTGLIADTFAA 65
           H  S     +  +P F P   L +   L T   K       T+I   M L  +++     
Sbjct: 314 HGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVS----- 368

Query: 66  SRLIKFSTDLLPFIE---MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
                ++T L  +IE   +  + +IF  +   +   +  M+  Y+   + + A+ L+  M
Sbjct: 369 -----WNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQM 423

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
            + +V   +YTY     A     ++  GK +H H+++ GF++     N L+ MYA CG +
Sbjct: 424 RSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAV 483

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-----NIIAS 231
             AR +F   P +D VSWN++++      +  EA  ++++M      P+R      + A 
Sbjct: 484 KDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTAC 543

Query: 232 N-----------------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVS- 261
           N                              +I L GR G + EA  L K MP +   + 
Sbjct: 544 NHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAI 603

Query: 262 WSALIS 267
           W A++S
Sbjct: 604 WEAILS 609


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/818 (33%), Positives = 429/818 (52%), Gaps = 79/818 (9%)

Query: 24  FKPTINLSILETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           FKP  + +     LQ+C S K      ++   +   G   +      LI+         E
Sbjct: 1   FKP--DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPE 58

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
                ++F  LE  + F +  M+  Y Q+    +A+ ++  M   +V     TY  +  A
Sbjct: 59  AQ---QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 115

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   S+ +G  IH  +L+ GF+ DV+V   LINMY  CG +  A   F      D+VSW
Sbjct: 116 CASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW 175

Query: 201 NSILAGYVNADN-----------------------------------VEEAKFIY----N 221
            +++A  V  D                                    + E KFIY    +
Sbjct: 176 TAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSS 235

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           ++ E ++   NS + +FG  G + +A RLF++M  +D+V+W+ +I+ Y QNE + EA+ L
Sbjct: 236 RVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRL 295

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  +    +  +++  V +L+   +LT +  G  +H L  + G +  + +  AL+ +Y  
Sbjct: 296 FGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGR 355

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           C     A K+F    + D+I+W  M                                  Y
Sbjct: 356 CEAPGQAWKIFVDMGSKDVITWTVM-------------------------------CVAY 384

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           AQ+    E L LF EMQ  G RP  ATLV+V+  C HL AL +G+ IH++I +NG ++  
Sbjct: 385 AQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEM 444

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           ++ T LI+MY K G +  A  VF    ++ +  WN+++  +A +G  D++L++F++M+  
Sbjct: 445 VVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLD 504

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G   + ++FV VL A  H G V +G+++F +M+Q+  + P  + YGC+VDLLGRAG ++E
Sbjct: 505 GEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQE 564

Query: 582 AEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           A +++  +    PD   W  LLGAC+ H   +  +    +++E  P H G +V+LSN++A
Sbjct: 565 AVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYA 624

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + G WD V  +R +M  RGV K PG S IE    +HEFL GDR+HP+ + I   LD +  
Sbjct: 625 AAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNS 684

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           +++  GY PDT  +  D++ E KE  LF HSE+LAIAFGL++  P  P+R++KNLR+C+D
Sbjct: 685 EMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSD 744

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CHTA K+IS+   REI+VRD HRFH+FK G CSC D+W
Sbjct: 745 CHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 363/600 (60%), Gaps = 47/600 (7%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           GN+  A ++F  +P   +  W+ +I  Y +    E  + +++ M+   +  D       L
Sbjct: 55  GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
                   ++ G  +   AVK G +  + +Q A IHM+S CG +  A K+FD G   +++
Sbjct: 115 KGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVV 174

Query: 362 SWNSMISGYLK-------------------------------------------CGSVEK 378
           +WN M+SGY +                                           CG +++
Sbjct: 175 TWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDE 234

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A+ +FD M  +DVVSW+ MI GY + + F   L+LF EMQ   ++PDE T+VS++ AC  
Sbjct: 235 AQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACAL 294

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+ G+W+   I KN  K +S +G  L+DMY K G V  A +VF    +K   +W  +
Sbjct: 295 LGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTM 354

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I+G A+NG  +++L MFS M ++ VTP+EIT++GVL AC    +VD+G   F +M  +H 
Sbjct: 355 IVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHG 410

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           ++P   HYGCMVDLLG  G L+EA E+I +MP+ P+   WG+ LGAC+ H + ++ +   
Sbjct: 411 IKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAA 470

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           ++++EL+P++   +VLL NI+A+  +W+++ +VR +M+ RG+ K PGCS++E NG ++EF
Sbjct: 471 KQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEF 530

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
           +AGD++HPQ  EI   L+ M + L   GY+PDT EV  D+ +E+KET L+RHSEKLAIA+
Sbjct: 531 VAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAY 590

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            LI+  P   IRI+KNLR+C DCH  AK +S+A++RE++V+D+ RFHHF+HGSCSC +FW
Sbjct: 591 ALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 227/460 (49%), Gaps = 49/460 (10%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+KC+S  Q  QI S  I  GL +D    +R+I F         M+Y+ ++F  +  P+ 
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESG-NMNYAHQVFDTIPHPSM 72

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           FI+NTM++ Y + + P+  + +Y LML +N+  D +T+P   +     +++  GK + +H
Sbjct: 73  FIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNH 132

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K GFDS+++V    I+M+++CG +  A K+FD     ++V+WN +L+GY      + +
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKIS 192

Query: 217 KFIY-----NKMPE----RNIIAS-NSMIV--LFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           K +      +K+ +    ++I    N  IV  +F   G + EA  +F  M  +D+VSW+A
Sbjct: 193 KMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTA 252

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I  Y +   +  AL LF  M    V  DE  +VS+L ACA L  ++ G  V     K  
Sbjct: 253 MIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNS 312

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +    + NAL+ MY  CG +  A+K+F   +  D  +W +MI G    G  E+A A+F 
Sbjct: 313 NKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFS 372

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            MIE  V                                PDE T + V+ AC     +D+
Sbjct: 373 NMIEASVT-------------------------------PDEITYIGVLCACM----VDK 397

Query: 445 GK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           GK +      ++G+K        ++D+   +GC++ ALEV
Sbjct: 398 GKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEV 437


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/721 (35%), Positives = 408/721 (56%), Gaps = 67/721 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLL 137
           EM Y   +F  +   +G  +N+++  Y    +  Q++  Y LML N+    ++  T+  L
Sbjct: 93  EMEY---LFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTL 149

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
              ++ R  V  G+ IH HV+K GF S V+V + L++MY+  G +S ARK+FDE      
Sbjct: 150 LILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE------ 203

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                                    +PE+N++  N++I+   R G V ++ RLF EM ++
Sbjct: 204 -------------------------LPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRER 238

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D +SW+++I+ + QN +  +A+ +F  M    + +D+    SVL+AC  +  ++ G  VH
Sbjct: 239 DSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVH 298

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           A  ++   +  I + +AL+ MY                                KC +++
Sbjct: 299 AYIIRTDYKDNIFVASALVDMYC-------------------------------KCKNIK 327

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            A A+F  M  K+VVSW+ M+ GY Q+    E +  F +MQ +GI PD+ TL SVIS+C 
Sbjct: 328 SAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCA 387

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           +L +L++G   HA    +GL     +   L+ +Y K G ++++  +F+    K   +W A
Sbjct: 388 NLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTA 447

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           L+ G+A  G A++++ +F  M   G+ P+++TF+GVL AC   GLV++G++ F SMI EH
Sbjct: 448 LVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            + P   HY CM+DL  RAG ++EA   I  MP SPD  +W  LL +C+ +G+ ++G+  
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
              L+EL P +   +VLLS+++A+KG+W++V  +R  M  +G+ K PGCS I+    +H 
Sbjct: 568 AEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHV 627

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F A D+++P  ++I + L+++  K+  EGY PD   V  D+   EK   L  HSEKLAIA
Sbjct: 628 FSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIA 687

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+ I P  PIR++KNLR+C+DCH A K+IS+  +REI+VRD  RFH FK G+CSC DF
Sbjct: 688 FGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDF 747

Query: 798 W 798
           W
Sbjct: 748 W 748



 Score =  236 bits (601), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 259/494 (52%), Gaps = 41/494 (8%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           + K +H H++K     + ++ N LI+ YA  G +  A K+FD+ P  +L SWN+IL+ Y 
Sbjct: 27  KAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYS 86

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
               V E +++++ MP R+ ++ NS+I  +   G + ++ + +  M K D          
Sbjct: 87  KLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKND--------GS 138

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           +  N                R+    +++++    C     VK G  +H   VK G   Y
Sbjct: 139 FNLN----------------RITFSTLLILASKRGC-----VKLGRQIHGHVVKFGFMSY 177

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + + + L+ MYS  G I+ A K+FD     +++ +N++I G ++CG VE ++ LF  M E
Sbjct: 178 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 237

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           +D +SW++MI+G+ Q+    + + +F EM+   ++ D+ T  SV++AC  ++AL +GK +
Sbjct: 238 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           HAYI +   K N  + + L+DMY K   + +A  VF     K V SW A+++G+  NG +
Sbjct: 298 HAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 357

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +++++ FS+M+K G+ P++ T   V+ +C ++  ++EG + F++      L         
Sbjct: 358 EEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNA 416

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE----- 623
           +V L G+ G ++++  L   +    +V TW AL+    + G  +  E +G  L E     
Sbjct: 417 LVTLYGKCGSIEDSHRLFNEISFKDEV-TWTALVSGYAQFG--KANETIG--LFESMLAH 471

Query: 624 -LQPDHDGFHVLLS 636
            L+PD   F  +LS
Sbjct: 472 GLKPDKVTFIGVLS 485



 Score = 40.0 bits (92), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           +++  C       + K +H++I K      + L   LI  Y KLG +  A +VF      
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
            + SWN ++  ++  G   +   +F  M ++ GV+ N  + +     C   GL+ +  + 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWN--SLISGYAGC---GLIYQSVKA 128

Query: 550 FNSMIQ-EHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +N M++ +     N   +  ++ L  + G +K   ++
Sbjct: 129 YNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQI 165


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/636 (38%), Positives = 373/636 (58%), Gaps = 40/636 (6%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA-DNVEEAKFIYNK 222
           S+V  +N +I  +   GDL++A ++F+   V   V+WNS+LAGY N    ++ A+ ++++
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +PE +I + N M+  +    +V  A   F +MP KD  SW+ +IS + QN M ++A  LF
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           + M                        V+   S                 NA+I  Y   
Sbjct: 123 LVM-----------------------PVRNSVS----------------WNAMISGYVES 143

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G++  A++LF+      +++W +MI+G++K G +E A   F+ M  K++V+W+ MI+GY 
Sbjct: 144 GDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYI 203

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           ++ Q    L LF  M   G RP+ ++L SV+  C++L AL  GK +H  I K+ +  N  
Sbjct: 204 ENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNIT 263

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
            GT+L+ MY K G +++A ++F    +K V +WNA+I G+A +G  +K+L +F +M+  G
Sbjct: 264 AGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEG 323

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P+ ITFV VL AC H G VD G  +FNSM++++ +E    HY C+VDLLGR G L EA
Sbjct: 324 MKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEA 383

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            +LI+ MP  P  A +G LLGAC+ H + E+ E   + L+ L P+    +V L+N++A+ 
Sbjct: 384 VDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAM 443

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            RWD V  VR  M    V+K PG S IE   ++HEF +GDR HP++  I   L+E+ +K+
Sbjct: 444 NRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKM 503

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           +L GY PD      D+ +E+K+  L RHSEKLAIA+GLI +    PIR+ KNLR+C DCH
Sbjct: 504 RLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCH 563

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +A K+IS    R I+VRD  RFHHF+ G CSC D+W
Sbjct: 564 SATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 213/460 (46%), Gaps = 73/460 (15%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + ++F  +       +N+M+  Y  R   +  I + + + +     D ++Y ++  
Sbjct: 20  DLNSALRVFESMTVKTTVTWNSMLAGYSNR---RGKIKVARQLFDRIPEPDIFSYNIMLA 76

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                  V   +L  D +       D    NT+I+ ++  G +  AR+LF   PV + VS
Sbjct: 77  CYLHNADVESARLFFDQMPV----KDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVS 132

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           WN++++GYV + +++ AK ++   P R+++A  +MI  F + G +  A + F+EMP K+L
Sbjct: 133 WNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNL 192

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V+W+A+I+ Y +N   E  L LF  M++     +   + SVL  C+NL+ +K G  VH L
Sbjct: 193 VTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQL 252

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             K  +   I    +L+ MY  CG++  A KLF      D+++WN+MISGY + G+ EKA
Sbjct: 253 ICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKA 312

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
             LFD                               +M+  G++PD  T V+V+SAC H 
Sbjct: 313 LYLFD-------------------------------KMRDEGMKPDWITFVAVLSACNHA 341

Query: 440 VALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             +D G ++ ++ +R  G++      T ++D+                            
Sbjct: 342 GFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLL--------------------------- 374

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
                  G   K +E    +KK    P+   F  +LGACR
Sbjct: 375 -------GRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACR 407



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 48/229 (20%)

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132
           T  + F ++  + K F  +   N   +N M+  YI+    +  + L+K M+ +    +  
Sbjct: 169 TGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPS 228

Query: 133 TYPLL----AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +   +    +  SAL+L    GK +H  + K+    ++    +L++MY  CGDL  A KL
Sbjct: 229 SLSSVLLGCSNLSALKL----GKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------- 231
           F   P  D+V+WN++++GY      E+A ++++KM +  +                    
Sbjct: 285 FLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344

Query: 232 -------NSMIV----------------LFGRKGNVAEACRLFKEMPKK 257
                  NSM+                 L GR G + EA  L K+MP K
Sbjct: 345 DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFK 393


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/525 (44%), Positives = 340/525 (64%), Gaps = 7/525 (1%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           ++  M  H V  D      +L +  N   +  G   HA  +  G++    ++ +L++MYS
Sbjct: 48  VYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS 107

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
           SCG++++A ++FD   + DL +WNS+++ Y K G +  AR LFD M E++V+SWS +I+G
Sbjct: 108 SCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLING 167

Query: 401 YAQHDQFSETLSLFMEMQHHG-----IRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           Y    ++ E L LF EMQ        + P++ T+ +V+SAC  L AL+QGKW+H+YI K 
Sbjct: 168 YVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKY 227

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEM 514
           G++I+ +LGT LIDMY K G ++ A  VF     +K V +++A+I   AM GL D+  ++
Sbjct: 228 GVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQV 287

Query: 515 FSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           FSEM  S  + PN +TFVG+LGAC H GL+++G  +F  M +E  + P+ +HYGCMVDL 
Sbjct: 288 FSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLY 347

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GR+G++KEAE  I SMPM PDV  WG+LL   +  GD +  E   ++L+EL P + G +V
Sbjct: 348 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 407

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN++A  GRW +V  +R  M  +G+ K+PGCS +E  G++HEF+ GD +  +   I  
Sbjct: 408 LLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 467

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           ML+E+ ++L+  GY  DT EV  D+++++KE  L  HSEKLAIAF L+   P  P+RI+K
Sbjct: 468 MLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIK 527

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLRIC DCH   K IS+ F REIVVRD +RFHHF  GSCSC DFW
Sbjct: 528 NLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 208/439 (47%), Gaps = 75/439 (17%)

Query: 81  MSYSFKIFAF----LESPNGFIFNTMMRAYIQRNVPQQ---AICLYKLMLNNNVGVDNYT 133
           +SY+  IF      LES   F++N ++RA +    P Q    I +Y  M ++ V  D +T
Sbjct: 7   ISYANPIFHIRHLKLES---FVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHT 63

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           +P L  +    + +  G+  H  +L  G D D +V  +L+NMY+ CGDLS+A ++FDES 
Sbjct: 64  FPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESV 123

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
             DL +WNS++  Y  A  +  A+ ++++MPERN+I+ + +I  +   G   EA  LF+E
Sbjct: 124 SKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 183

Query: 254 M--PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           M  PK               NE++              V  ++  + +VLSAC  L  ++
Sbjct: 184 MQLPKP--------------NEVF--------------VSPNKFTMSTVLSACGRLGALE 215

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH+   K G+E  I L  ALI MY+ CG +  A+++FDA                 
Sbjct: 216 QGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDA----------------- 258

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLV 430
             GS            +KDV ++S MI   A +    E   +F EM   + I P+  T V
Sbjct: 259 -LGS------------KKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFV 305

Query: 431 SVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-- 487
            ++ AC H   +++GK +      + G+  +      ++D+Y + G +  A E F  +  
Sbjct: 306 GILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEA-ESFIASMP 364

Query: 488 EEKGVSSWNALIIGFAMNG 506
            E  V  W +L+ G  M G
Sbjct: 365 MEPDVLIWGSLLSGSRMLG 383


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/801 (32%), Positives = 426/801 (53%), Gaps = 46/801 (5%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100
           Q  K   +I   ++  G++ D F +S  + F    L   E      +F  +   +   +N
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQ---TVFDLMPHRDVVTWN 211

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
           ++   Y+    PQ+ + +++ M+ + V  D  T   +  A +    +  GK IH   LK 
Sbjct: 212 SLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKH 271

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G   +V+V+N L+N+Y  C  +  A+ +FD  P  ++++WNS+ + YVN    ++   ++
Sbjct: 272 GMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVF 331

Query: 221 NKM------PE---------------------------------RNIIASNSMIVLFGRK 241
            +M      P+                                  ++    +++ L+   
Sbjct: 332 REMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANC 391

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
             V EA  +F  MP +++V+W++L SCY      ++ L +F  M+ + V  D V ++S+L
Sbjct: 392 LCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSIL 451

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC++L  +K+G  +H  AV+ G+   + + NAL+ +Y+ C  +  A+ +FD   + ++ 
Sbjct: 452 HACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVA 511

Query: 362 SWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           SWN +++ Y      EK   +F  M    ++ D ++WS +I G  ++ +  E + +F +M
Sbjct: 512 SWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM 571

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q  G +PDE T+ S++ AC+    L  GK IH Y+ ++    +      L+DMY K G +
Sbjct: 572 QTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGL 631

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             +  VF     K V SWN +I    M+G   ++L +F +M  S V P+  TF  VL AC
Sbjct: 632 SLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSAC 691

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H  LV+EG + FNSM ++H +EP ++HY C+VD+  RAG L+EA   I+ MPM P    
Sbjct: 692 SHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIA 751

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           W A L  C+ + + E+ +   +KL E+ P+    +V L NI  +   W +  ++R +M  
Sbjct: 752 WKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKE 811

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           RG+ K PGCS       +H F+AGD+++ + ++I N LDE+  K+K  GY PDT  V  D
Sbjct: 812 RGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHD 871

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           IDQEEK  +L  HSEKLA+AFG++ ++  + IR+ KNLRIC DCH A K++S      IV
Sbjct: 872 IDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIV 931

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFHHFK+G+CSC DFW
Sbjct: 932 VRDSLRFHHFKNGNCSCKDFW 952



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 252/547 (46%), Gaps = 72/547 (13%)

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           I   +P +AI +Y       +  D   +  +A+A A      + K  HD   + G  SDV
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-- 224
            + N  I+ Y  C  +  AR++FD+    D+V+WNS+ A YVN    ++   ++ KM   
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLN 135

Query: 225 -------------------------------------ERNIIASNSMIVLFGRKGNVAEA 247
                                                  ++  S++ +  + +   V EA
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREA 195

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             +F  MP +D+V+W++L SCY      ++ L +F  M+   V  D V V  +LSAC++L
Sbjct: 196 QTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDL 255

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +K+G ++H  A+K G+   + + NAL+++Y SC  +  A+ +FD   + ++I+WNS+ 
Sbjct: 256 QDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLA 315

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           S Y+ CG  +K                                L++F EM  +G++PD  
Sbjct: 316 SCYVNCGFPQKG-------------------------------LNVFREMGLNGVKPDPM 344

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            + S++ AC+ L  L  GK IH +  K+G+  +  + T L+++Y    CV  A  VF   
Sbjct: 345 AMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLM 404

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +WN+L   +   G   K L +F EM  +GV P+ +T + +L AC  +  +  G 
Sbjct: 405 PHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG- 463

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           +  +     H +  +      ++ L  +   ++EA+ + + +P   +VA+W  +L A   
Sbjct: 464 KVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGILTAYFT 522

Query: 608 HGDHEMG 614
           + ++E G
Sbjct: 523 NKEYEKG 529



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/627 (24%), Positives = 285/627 (45%), Gaps = 109/627 (17%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  L + +   +N++   Y+    PQQ + +++ M  N V  +  T   +    +   
Sbjct: 96  RVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQ 155

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  GK IH  V++ G   DV+V++  +N YA C  +  A+ +FD  P  D+V+WNS+ +
Sbjct: 156 DLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSS 215

Query: 206 GYVNADNVEEAKFIYNKM------PE---------------------------------R 226
            YVN    ++   ++ +M      P+                                  
Sbjct: 216 CYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVE 275

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N+  SN+++ L+     V EA  +F  MP +++++W++L SCY      ++ L +F  M 
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMG 335

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            + V  D + + S+L AC+ L  +K+G ++H  AVK G+   + +  AL+++Y++C  + 
Sbjct: 336 LNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVR 395

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A+ +FD   + ++++WNS+ S Y+ CG  +K                            
Sbjct: 396 EAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKG--------------------------- 428

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
               L++F EM  +G++PD  T++S++ AC+ L  L  GK IH +  ++G+  +  +   
Sbjct: 429 ----LNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNA 484

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ +Y K  CV  A  VF     + V+SWN ++  +  N   +K L MFS+M +  V  +
Sbjct: 485 LLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKAD 544

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS----------------------- 563
           EIT+  V+G C     ++E    F  M Q    +P+                        
Sbjct: 545 EITWSVVIGGCVKNSRIEEAMEIFRKM-QTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 564 ----KHY--------GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
               +H+          +VD+  + G L  +  + + MP+  DV +W  ++ A   HG+ 
Sbjct: 604 CYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGNG 662

Query: 612 EMGERVGRKLV--ELQPDHDGFHVLLS 636
           +    +  K++   ++PD   F  +LS
Sbjct: 663 KEALSLFEKMLLSMVKPDSATFTCVLS 689



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 207/435 (47%), Gaps = 40/435 (9%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+ I  +G+   V  A R+F ++  +D+V+W++L +CY      ++ L +F  M  ++V 
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            + + V S+L  C++L  +K+G  +H   V+ G+   + + +A ++ Y+ C  +  A+ +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD   + D+++WNS+ S Y+ CG  +K                                L
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKG-------------------------------L 227

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           ++F EM   G++PD  T+  ++SAC+ L  L  GK IH +  K+G+  N  +   L+++Y
Sbjct: 228 NVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLY 287

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
               CV  A  VF     + V +WN+L   +   G   K L +F EM  +GV P+ +   
Sbjct: 288 ESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMS 347

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L AC  +  +  G +  +    +H +  +      +V+L      ++EA+ + + MP 
Sbjct: 348 SILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSNIHASKGRWD--D 647
             +V TW +L       G  + G  V R++V   ++PD      +LS +HA     D   
Sbjct: 407 R-NVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPD---LVTMLSILHACSDLQDLKS 462

Query: 648 VLEVRGMMVRRGVVK 662
              + G  VR G+V+
Sbjct: 463 GKVIHGFAVRHGMVE 477



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 174/391 (44%), Gaps = 42/391 (10%)

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA+ ++ +     +  D+ V ++V  ACA           H  A + G+   +++ NA I
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           H Y                                KC  VE AR +FD ++ +DVV+W++
Sbjct: 83  HAYG-------------------------------KCKCVEGARRVFDDLVARDVVTWNS 111

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           + + Y       + L++F +M  + ++ +  T+ S++  C+ L  L  GK IH ++ ++G
Sbjct: 112 LSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +  +  + +  ++ Y K  CV  A  VF     + V +WN+L   +   G   K L +F 
Sbjct: 172 MVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFR 231

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM   GV P+ +T   +L AC  +  +  G +  +    +H +  N      +V+L    
Sbjct: 232 EMVLDGVKPDPVTVSCILSACSDLQDLKSG-KAIHGFALKHGMVENVFVSNALVNLYESC 290

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK--LVELQPDHDGFHVL 634
             ++EA+ + + MP   +V TW +L       G  + G  V R+  L  ++PD     + 
Sbjct: 291 LCVREAQAVFDLMPHR-NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPD----PMA 345

Query: 635 LSNIHASKGRWDDVLE---VRGMMVRRGVVK 662
           +S+I  +  +  D+     + G  V+ G+V+
Sbjct: 346 MSSILPACSQLKDLKSGKTIHGFAVKHGMVE 376


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 382/614 (62%), Gaps = 14/614 (2%)

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN---SMIVLF----GRKGNVAEACRL 250
           +S N +++      ++ E + I+ +M + N++      S ++ F    G  G +  A  +
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI---DHRVMVDEVVVVSVLSACANL 307
           F  +   +   + ALI  +       E+L+L+  M+   ++   V E  + SVL AC  L
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV-EFSIPSVLKACGKL 122

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
                G  VH   +K  +     + N+++ MY   GEI  A ++FD   N D++SWNSMI
Sbjct: 123 LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMI 182

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GYLK G +E A+ +F+ M +KDVV+W++MIS Y Q+    + L LF EM   G+RPD  
Sbjct: 183 AGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGP 242

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMKLGCVDNALEVFHG 486
            +VSV+SA   L  +++GKW+HAY+  N ++++S  +G+ LIDMY K G ++NA  VF  
Sbjct: 243 AIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRS 302

Query: 487 -TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
            +  + +  WN++I G A++GLA ++L++F EM++  + PNEITF+G+L  C H GLV+E
Sbjct: 303 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 362

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F SM +++++ P  +HYGCM+DL GRAG L++A  +I++MP   D+  W A+L A 
Sbjct: 363 GQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSAS 422

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
            KHG  E+G+    + +EL PD    +VLLSNI+A  GRWDDV ++R MM +RGV KI G
Sbjct: 423 MKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAG 482

Query: 666 CSMIEANGIIHEFLAGDRTHPQIN-EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           CS +  NG +HEFL G       + ++   + E+  +LKL+GY PD  +V  DI+ E KE
Sbjct: 483 CSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKE 542

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
           + L  HSEK+AIAFGLI I+   PI I+KNLR+C DCH   K +S+ ++R+I++RD++RF
Sbjct: 543 SLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRF 602

Query: 785 HHFKHGSCSCMDFW 798
           HHF++G CSC ++W
Sbjct: 603 HHFENGCCSCNEYW 616



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 225/470 (47%), Gaps = 70/470 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KC+S  +  QI +QMI T L+   F  SRLI F +       + Y+  +F+ ++ PN 
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLML---NNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           FIF  +++ +   + P +++ LY  ML   N + GV+ ++ P + +A    L+  EG+ +
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE-FSIPSVLKACGKLLAFDEGRQV 131

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  VLK     D +V N+++ MY   G++  AR++FD  P  D+VSWNS++AGY+ A  +
Sbjct: 132 HGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEI 191

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
           E AK ++  M +++++   SM                               IS Y QN 
Sbjct: 192 ELAKKVFETMSDKDVVTWTSM-------------------------------ISAYVQNR 220

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQ 332
              +AL LF  M+   +  D   +VSVLSA A+L  V+ G  +HA      IE     + 
Sbjct: 221 CPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIG 280

Query: 333 NALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           +ALI MYS CG I  A  +F +  H  ++  WNSM                         
Sbjct: 281 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSM------------------------- 315

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                 ISG A H    E L +F+EM+   I P+E T + ++S C+H   +++G++    
Sbjct: 316 ------ISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFES 369

Query: 452 IRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           + +    +  I     +ID++ + G +++AL V      E  + +W A++
Sbjct: 370 MHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 419


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/593 (42%), Positives = 367/593 (61%), Gaps = 54/593 (9%)

Query: 212 NVEEAKFIYNKMPERNIIASN---SMIVLF---GRKGNVAEACRLFKEMPKKDLVSWSAL 265
           N+EE + I+ +M +  +I      S ++ F      G++A A  +F  + + +   W+ +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I  Y  ++  EEAL+L+ +M+ H V  +      +L AC++++ ++    +HA  +K+G 
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              I   N+L+++YS                               K G ++ AR LFD 
Sbjct: 150 GSEIYTTNSLLNVYS-------------------------------KSGDIKSARLLFDQ 178

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           + ++D                 +E L+LF  MQ  GI+ D   LVS + AC  L  LDQG
Sbjct: 179 VDQRD-----------------TEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 221

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KWIHAYI+K+ ++I+ ILG  LIDMY K G ++ A+EVF   EEKGVS W A+I G+A++
Sbjct: 222 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 281

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G   ++LE F +M+ +GV PN++TF G+L AC H GLV E    F SM + H  +P+ +H
Sbjct: 282 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 341

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGCMVDLLGRAG+LKEAEELIE+MP+ P+ A WGALL AC  HG+ E+G+++G+ L+++ 
Sbjct: 342 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 401

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P H G ++ L++IHA+ G W+    VR  M  +GV K+PGCS+I  NG  HEFLAGD +H
Sbjct: 402 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 461

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQI EID+ML+++ ++L+ EGY P   ++  D++ +EKET +  HSEKLA+ FGLI+  P
Sbjct: 462 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 521

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              IRI+KNLR+C DCHT  K IS+ + REI++RDR RFH FK G+C+C D+W
Sbjct: 522 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 193/381 (50%), Gaps = 31/381 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ+C + ++  QI  QM+ TGLI D   AS+L+ F         ++Y+  +F  +  PN 
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSG-SLAYARTVFDRIFRPNT 83

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F++NTM+R Y     P++A+ LY  ML ++V  + YT+P L +A +   ++ E + IH H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE------------------SPVLDLV 198
           ++K GF S++Y  N+L+N+Y+  GD+ +AR LFD+                     LD V
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNV 203

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEM 254
           +  S L    +   +++ K+I+  + +  I    I    +I ++ + G++ EA  +F++M
Sbjct: 204 ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 263

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
            +K +  W+A+IS Y  +    EAL  FM M    V  +++    +L+AC++  +V    
Sbjct: 264 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 323

Query: 315 SVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS----WNSMISG 369
            +     +I G +  I     ++ +    G +  AE+L +   N+ +      W ++++ 
Sbjct: 324 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIE---NMPVKPNAAIWGALLNA 380

Query: 370 YLKCGSVEKARALFDAMIEKD 390
               G++E  + +   +I+ D
Sbjct: 381 CHIHGNLELGKQIGKILIQVD 401


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/568 (41%), Positives = 359/568 (63%), Gaps = 11/568 (1%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +   G++  +  LF   P  ++  W+ +I+ +   +++  AL  +  M+ H +  +   +
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+L AC     +    +VH+ A+K G+  ++ +   L+  Y+  G++ +A+KLFDA   
Sbjct: 125 SSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             L+S+ +M++ Y K G + +AR LF+ M  KDVV W+ MI GYAQH   +E L  F +M
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 418 QHHG-------IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
                      +RP+E T+V+V+S+C  + AL+ GKW+H+Y+  NG+K+N  +GT L+DM
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDM 300

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G +++A +VF   E K V +WN++I+G+ ++G +D++L++F EM   GV P++ITF
Sbjct: 301 YCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITF 360

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           V VL AC H GLV +G   F+SM   + +EP  +HYGCMV+LLGRAG ++EA +L+ SM 
Sbjct: 361 VAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSME 420

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           + PD   WG LL AC+ H +  +GE +   LV       G +VLLSN++A+   W  V +
Sbjct: 421 VEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAK 480

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR MM   GV K PGCS IE    +HEF+AGDR HP+  +I +ML++M   LK   Y P 
Sbjct: 481 VRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPK 540

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  DI ++EKE +L  HSEKLA+AFGLI+ SP   I+I+KNLR+C DCH   K +S+
Sbjct: 541 TDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSK 600

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R+I++RDR+RFHHF++GSCSC D+W
Sbjct: 601 ISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 196/433 (45%), Gaps = 81/433 (18%)

Query: 20  AKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI 79
           A P+ K   NL++L   +   +S     QI + ++  GL        +L +    L    
Sbjct: 18  AAPVDKD--NLALL---IDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLG--- 69

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            + +S  +F    +PN F++  ++ A+   ++   A+  Y  ML + +  + +T   L +
Sbjct: 70  HLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLK 129

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A  L       + +H H +K G  S +YV+  L++ YA  GD+++A+KLFD         
Sbjct: 130 ACTLH----PARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFD--------- 176

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                                  MPER++++  +M+  + + G + EA  LF+ M  KD+
Sbjct: 177 ----------------------AMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDV 214

Query: 260 VSWSALISCYEQNEMYEEALVLFMN-------MIDHRVMVDEVVVVSVLSACANLTVVKA 312
           V W+ +I  Y Q+    EALV F           + +V  +E+ VV+VLS+C  +  ++ 
Sbjct: 215 VCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALEC 274

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VH+     GI+  + +  AL+ MY  CG +  A K+FD     D+++WNSMI GY  
Sbjct: 275 GKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGY-- 332

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
                                    I G++      E L LF EM   G++P + T V+V
Sbjct: 333 ------------------------GIHGFSD-----EALQLFHEMCCIGVKPSDITFVAV 363

Query: 433 ISACTHLVALDQG 445
           ++AC H   + +G
Sbjct: 364 LTACAHAGLVSKG 376



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 26/256 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGV------DNYTYPLLAQASALRLSVFE-GK 151
           +N M+  Y Q   P +A+  ++ M+    G        N    +   +S  ++   E GK
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H +V   G   +V V   L++MY  CG L  ARK+FD     D+V+WNS++ GY    
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336

Query: 212 NVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM-------PKKDLV 260
             +EA  ++++M    +  S+    +++      G V++   +F  M       PK +  
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVE-- 394

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
            +  +++   +    +EA  L  +M    V  D V+  ++L AC   + V  G  +  + 
Sbjct: 395 HYGCMVNLLGRAGRMQEAYDLVRSM---EVEPDPVLWGTLLWACRIHSNVSLGEEIAEIL 451

Query: 321 VKIGIE---CYINLQN 333
           V  G+     Y+ L N
Sbjct: 452 VSNGLASSGTYVLLSN 467



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 37/193 (19%)

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IHA + + GL  + IL   L   Y  LG + +++ +FH T    V  W  +I   A   L
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGAC------------------RHM----GLVD- 544
              +L  +S+M    + PN  T   +L AC                   H+    GLVD 
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDA 161

Query: 545 --------EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
                      + F++M +   +      Y  M+    + GML EA  L E M M  DV 
Sbjct: 162 YARGGDVASAQKLFDAMPERSLVS-----YTAMLTCYAKHGMLPEARVLFEGMGMK-DVV 215

Query: 597 TWGALLGACKKHG 609
            W  ++    +HG
Sbjct: 216 CWNVMIDGYAQHG 228


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/760 (35%), Positives = 409/760 (53%), Gaps = 79/760 (10%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           +  +F  +E PN   +  ++ A+ +    ++A+  Y+ M+   +  D   + +     + 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 144 RLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              + +G+L+H  +L+    + D+ +   LI MYA C DL  ARK FDE     LV+WN+
Sbjct: 71  SKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 203 ILAGYVNADNVEEAKFIYNKM----PE-------------------------RNI----- 228
           ++AGY    +   A  IY  M    PE                         R I     
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTV 190

Query: 229 --------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                   I  N++I ++ + G++  A ++F  +  +D+++W+ +IS Y +     +AL 
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF  M  +    + V  + +L+AC NL  ++ G ++H                       
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH----------------------- 287

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS-VEKARALFDAMIEKDVVSWSTMIS 399
                    K+ + G+  DL+  N +++ Y KC S +E+AR +F+ M  +DV++W+ +I 
Sbjct: 288 --------RKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIV 339

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y Q+ Q  + L +F +MQ   + P+E TL +V+SAC  L A  QGK +HA I     K 
Sbjct: 340 AYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKA 399

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           + +L  +L++MY + G +D+ + VF    +K + SW+ LI  +A +G +   LE F E+ 
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           + G+  +++T V  L AC H G++ EG + F SM+ +H L P+ +H+ CMVDLL RAG L
Sbjct: 460 QEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRL 519

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV-LLSNI 638
           + AE LI  MP  PD   W +LL  CK H D +   RV  KL EL+ + +   V LLSN+
Sbjct: 520 EAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNV 579

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A  GRWDDV + R    RR   K PGCS IE N  +HEF+AGD++HP+   I   +  +
Sbjct: 580 YAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRL 636

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           +K++K  GY PD   V  ++ +EEKE  L  HSEKLAIA+GLI+  P  P+ I+KNLR C
Sbjct: 637 SKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRAC 696

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH AAKFISR   R+IVVRD  RFHHF++GSCSC D+W
Sbjct: 697 VDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 222/484 (45%), Gaps = 77/484 (15%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------- 224
           MY  CG ++ A  +F      + VSW  I+A +    +  EA   Y +M           
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 225 ------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                         E +II   ++I ++ R  ++  A + F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR---VMVDEVVVVSVLSACANLTVVK 311
            KK LV+W+ALI+ Y +N  +  AL ++ +M+      +  D +   S L AC  +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  + A  V  G      +QNALI+MYS CG + +A K+FD   N D+I+WN+MISGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           K G+  +A                               L LF  M  +  +P+  T + 
Sbjct: 241 KQGAATQA-------------------------------LELFQRMGPNDPKPNVVTFIG 269

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-GCVDNALEVFHGTEEK 490
           +++ACT+L  L+QG+ IH  +R++G + + ++G  L++MY K    ++ A +VF     +
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V +WN LI+ +   G A  +L++F +M+   V PNEIT   VL AC  +G   +G +  
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAV 388

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +++I   R + +      ++++  R G L +   +  ++     + +W  L+ A  +HG 
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAYAQHGH 447

Query: 611 HEMG 614
              G
Sbjct: 448 SRTG 451



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 187/411 (45%), Gaps = 49/411 (11%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  +I ++ + +G  +D+   + LI   +       +  + K+F  L++ +   +NTM+ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCG---SLESARKVFDRLKNRDVIAWNTMIS 237

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y ++    QA+ L++ M  N+   +  T+  L  A      + +G+ IH  V + G++S
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYES 297

Query: 165 DVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           D+ + N L+NMY  C   L  AR++F+     D+++WN ++  YV     ++A  I+ +M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 224 PERNI-----------------------------IAS----------NSMIVLFGRKGNV 244
              N+                             IAS          NS++ ++ R G++
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            +   +F  +  K LVSWS LI+ Y Q+      L  F  ++   +  D+V +VS LSAC
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 305 ANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLIS 362
           ++  ++K G     ++    G+         ++ + S  G +  AE L  D     D ++
Sbjct: 478 SHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 363 WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISG-YAQHDQFSE 409
           W S++SG       ++A  + D + E   +D  S  T++S  YA+  ++ +
Sbjct: 538 WTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD 588



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G V +AL VFH  E     SW  ++  FA NG   ++L  +  M   G+ P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-CMVDLLGRAGMLKEAEELIES 588
           FV  +G C     + +G    ++MI E RL       G  ++ +  R   L+ A +  + 
Sbjct: 61  FVVAIGVCSSSKDLKQGQL-LHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           M     + TW AL+    ++GDH    ++ + +V   P+
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/766 (34%), Positives = 411/766 (53%), Gaps = 110/766 (14%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           ML     +D++T P + +A     S   G   H  +   GF+S+V++ N L+ MY+ CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 182 LSAARKLFDE---SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------ERNII 229
           L  A  +FDE     + D++SWNSI++ +V + N   A  +++KM          ER+ I
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 230 AS------------------------------------NSMIVLFGRKGNVAEACRLFKE 253
            S                                    N++I  + + G +  A ++F  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE------------------- 294
           M  KD+VSW+A+++ Y Q+  ++ A  LF NM    + +D                    
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 295 ----------------VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
                           V ++SVLSACA+L     G  +HA ++K    C + L N     
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK---NCLLTLDNDF--- 294

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD--AMIEKDVVSWST 396
                           G + DL+ +N++I  Y KC S + AR++FD   + E++VV+W+ 
Sbjct: 295 ---------------GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 339

Query: 397 MISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           MI G+AQ+   ++ L LF+EM  + +G+ P+  T+  ++ AC HL A+  GK IHAY+ +
Sbjct: 340 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 399

Query: 455 NGLKINS--ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
           +    +S   +   LI+MY K G VD A  VF    +K   SW +++ G+ M+G   ++L
Sbjct: 400 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 459

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           ++F +M+K+G  P++ITF+ VL AC H G+VD+G  +F+SM  ++ L P ++HY   +DL
Sbjct: 460 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDL 519

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           L R G L +A + ++ MPM P    W ALL AC+ H + E+ E    KLVE+  ++DG +
Sbjct: 520 LARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 579

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
            L+SNI+A+ GRW DV  +R +M + G+ K PGCS ++       F  GDR+HP   +I 
Sbjct: 580 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 639

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            +L+ +  ++K  GY P+T     D+D+EEK   L  HSEKLA+A+GL+T  P  PIRI 
Sbjct: 640 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRIT 699

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCH+A  +IS+  D EIVVRD  RFHHFK+GSCSC  +W
Sbjct: 700 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 105/504 (20%), Positives = 196/504 (38%), Gaps = 102/504 (20%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFK---QFTQILSQMILTGLIADTFAASRLIKFSTD 74
           V+ KP  + +  +SI+   L  C S K   Q  ++    I  G   D F  + LI     
Sbjct: 109 VHEKPTNERSDIISIVNI-LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAK 167

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
                 M  + K+F  +E  +   +N M+  Y Q    + A  L+K M   N+ +D  T+
Sbjct: 168 CGL---MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 224

Query: 135 PLLAQASALR------LSVF-----------------------------EGKLIHDHVLK 159
             +    + R      L+VF                             +G  IH + LK
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 284

Query: 160 ----------AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGY 207
                      G D D+ V N LI+MY+ C    AAR +FD+ P+   ++V+W  ++ G+
Sbjct: 285 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 344

Query: 208 VNADNVEEAKFIYNKM--------PERNIIA----------------------------- 230
               +  +A  ++ +M        P    I+                             
Sbjct: 345 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 404

Query: 231 ------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                 +N +I ++ + G+V  A  +F  M +K  +SW+++++ Y  +    EAL +F  
Sbjct: 405 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 464

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCG 343
           M     + D++  + VL AC++  +V  G S   +++   G+          I + +  G
Sbjct: 465 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFG 524

Query: 344 EITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV---SWSTMIS 399
            +  A K   D       + W +++S      +VE A    + ++E +     S++ + +
Sbjct: 525 RLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 584

Query: 400 GYAQHDQFSETLSLFMEMQHHGIR 423
            YA   ++ +   +   M+  GI+
Sbjct: 585 IYATAGRWKDVARIRHLMKKSGIK 608


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/654 (40%), Positives = 378/654 (57%), Gaps = 52/654 (7%)

Query: 164  SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS----------ILAGYVNADNV 213
            S+V+  N++I   A  GD   A + F     L L+   S           L   V+    
Sbjct: 1105 SNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMS 1164

Query: 214  EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
             +  F++    E ++  S+++I ++ + G + +A  LF E+P +++VSW+++I+ Y QNE
Sbjct: 1165 HQQAFVFGF--ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 1222

Query: 274  MYEEALVLFMNMID--------HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
              + AL+LF + ++        + V +D VV+VSVLSAC+ ++       VH   VK G 
Sbjct: 1223 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 1282

Query: 326  ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
            +                G I     L DA               Y KCG    ++ +FD 
Sbjct: 1283 D----------------GSIGVGNTLMDA---------------YAKCGQPLVSKKVFDW 1311

Query: 386  MIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQ 444
            M EKD +SW++MI+ YAQ     E L +F  M +H G+R +  TL +V+ AC H  AL  
Sbjct: 1312 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371

Query: 445  GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            GK IH  + K  L+ N  +GT++IDMY K G V+ A + F   +EK V SW A++ G+ M
Sbjct: 1372 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 1431

Query: 505  NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            +G A ++L++F +M ++GV PN ITFV VL AC H GLV+EG   FN+M  ++ +EP  +
Sbjct: 1432 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 1491

Query: 565  HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
            HYGCMVDL GRAG L EA  LI+ M M PD   WG+LLGAC+ H + ++GE   +KL EL
Sbjct: 1492 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 1551

Query: 625  QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
             PD+ G++VLLSN++A  GRW DV  +R +M  R +VK PG S++E  G +H FL GD+ 
Sbjct: 1552 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKE 1611

Query: 685  HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
            HP    I   L+++  +L+  GY P+   V  D+D+EEKE  L  HSEKLA+AFG++  +
Sbjct: 1612 HPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSA 1671

Query: 745  PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P   I I+KNLR+C DCHT  K IS+   R+ VVRD  RFHHFK G CSC D+W
Sbjct: 1672 PGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 216/383 (56%), Gaps = 4/383 (1%)

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           AK I + +    ++ +  +I L+   G +A A  LF ++      +W+ +I     N + 
Sbjct: 48  AKIIRSGLSNDQLL-TRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           E+AL+L+ NM+   +  D+     V+ AC N   +  G  VH   +K G    + +QN L
Sbjct: 107 EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNL 166

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I  Y  CG    A K+F+     +++SW ++ISG + CG +++AR +FD +  K+VVSW+
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI+GY ++ Q  E L LF  MQ   I P+E T+VS+I ACT +  L  G+ IH Y  KN
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
            ++I   LGT LIDMY K G + +A+EVF     K + +WN++I    ++GL  ++L +F
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           SEM++  V P+ ITF+GVL AC H+  V EG  +F  M Q + + P  +HY CM +L  R
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYAR 406

Query: 576 AGMLKEA---EELIESMPMSPDV 595
           +  L EA    + + S+  SP +
Sbjct: 407 SNNLDEAFKSTKEVGSLANSPSI 429



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 207/410 (50%), Gaps = 67/410 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFLESPN 95
           LQ C++FK   QI +++I +GL  D     +LI  +ST       ++Y+  +F  +++P 
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG----RIAYAILLFYQIQNPC 89

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            F +N ++RA     + +QA+ LYK M+   +  D +T+P + +A    LS+  GK++H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            ++K GF  DV+V N LI+ Y  CG    A K+F++  V ++VSW ++++G ++      
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC----- 204

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                                     G++ EA R+F E+P K++VSW+A+I+ Y +N+  
Sbjct: 205 --------------------------GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQP 238

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEAL LF  M    +  +E  +VS++ AC  + ++  G  +H  A+K  IE  + L  AL
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I MYS CG I  A ++F+      L +WNSMI+                          S
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT--------------------------S 332

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
             + G  Q     E L+LF EM+   ++PD  T + V+ AC H+  + +G
Sbjct: 333 LGVHGLGQ-----EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 215/502 (42%), Gaps = 83/502 (16%)

Query: 52   QMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
            Q  + G   D F +S LI   +      ++  +  +F  +   N   + +M+  Y+Q   
Sbjct: 1167 QAFVFGFETDLFVSSALIDMYSKCG---QLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 1223

Query: 112  PQQAICLYKLML--------NNNVGVDNYTYPLLAQASALRLS---VFEGKLIHDHVLKA 160
               A+ L+K  L         NNV +D+     +  A + R+S   + EG  +H  V+K 
Sbjct: 1224 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS-RVSGKGITEG--VHGFVVKK 1280

Query: 161  GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
            GFD  + V NTL++ YA CG    ++K+FD     D +SWNS++A Y  +    EA  ++
Sbjct: 1281 GFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVF 1340

Query: 221  NKMP----------------------------------------ERNIIASNSMIVLFGR 240
            + M                                         E N+    S+I ++ +
Sbjct: 1341 HGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK 1400

Query: 241  KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
             G V  A + F  M +K++ SW+A+++ Y  +   +EAL +F  M+   V  + +  VSV
Sbjct: 1401 CGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 1460

Query: 301  LSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNL 358
            L+AC++  +V+ G    +A+  K  IE  I     ++ ++   G +  A  L        
Sbjct: 1461 LAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKP 1520

Query: 359  DLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMISG-YAQHDQFSETLSL 413
            D + W S++       +V+     A+ LF+  ++ D   +  ++S  YA   ++++   +
Sbjct: 1521 DFVVWGSLLGACRIHKNVDLGEIAAQKLFE--LDPDNCGYYVLLSNLYADAGRWADVERM 1578

Query: 414  FMEMQHHG-IRPDEATLVSVISACTHLVALDQG----KWIHAYIRKNGLKINSILGTTLI 468
             M M++   ++P   +LV +       +  D+     + I+ Y+ K  L++         
Sbjct: 1579 RMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQ-------- 1630

Query: 469  DMYMKLGCVDNALEVFHGTEEK 490
                K+G V N   V H  +E+
Sbjct: 1631 ----KIGYVPNMTSVLHDVDEE 1648



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 388  EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
            + +V SW+++I+  A+     E L  F  ++  G+ P  ++    I +C+ L  L  G+ 
Sbjct: 1104 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRM 1163

Query: 448  IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
             H      G + +  + + LIDMY K G + +A  +F     + V SW ++I G+  N  
Sbjct: 1164 SHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 1223

Query: 508  ADKSLEMF-------SEMKKSGVTP-NEITFVGVLGAC 537
            AD +L +F       +E++     P + +  V VL AC
Sbjct: 1224 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSAC 1261


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/737 (35%), Positives = 401/737 (54%), Gaps = 51/737 (6%)

Query: 80  EMSYSFKIFAFLESPNGF----IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
           ++  S KIF+  ++P G      +N M+ AY   +    AI L+  M  +N   DNYT+ 
Sbjct: 94  DLKLSRKIFS--DTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFT 151

Query: 136 LLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---------LSAA 185
            +  A AL     +  + +H  V+K+G      V N LI+ Y  C           ++ A
Sbjct: 152 SVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEA 211

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVA 245
           RKLFDE                               MP R+ ++  ++I  + +  ++ 
Sbjct: 212 RKLFDE-------------------------------MPNRDELSWTTIITGYVKNNDLD 240

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A        KK  V+W+A+IS Y    +Y EA  +F  MI  ++ +DE    SV+S CA
Sbjct: 241 AAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCA 300

Query: 306 NLTVVKAGTSVHALAVKI----GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           N    + G  +HA  +K       +  + + NALI  Y  CG++  A+++F+     DL+
Sbjct: 301 NAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLV 360

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           SWN ++SGY+    +++A++ F+ M EK+++SW  MISG AQ     E L  F  M+  G
Sbjct: 361 SWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
             P +      I +C+ L +L  G+ +HA + + G + +   G  LI MY + G VD A 
Sbjct: 421 FEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAH 480

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F         SWNA+I     +G   +++E+F EM K G+ P+ I+F+ V+ AC H G
Sbjct: 481 CLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAG 540

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           LV EG ++F+SM   + + P+ +HY  ++DLL RAG   EA+E++ESMP  P    W AL
Sbjct: 541 LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL 600

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           L  C+ HG+ ++G     +L EL+P HDG +VLLSN++A  G+W+D+ +VR +M  RGV 
Sbjct: 601 LAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVK 660

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K PGCS IE    +H FL GD  HP++ +I N L+++  +++  GY PDT  V  D++ +
Sbjct: 661 KEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESD 720

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
            KE  L  HSEKLA+A+G + +     +R+ KNLRIC DCH A KF+S+   REIVVRD 
Sbjct: 721 LKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDG 780

Query: 782 HRFHHFKHGSCSCMDFW 798
            RFHHF+ G CSC D+W
Sbjct: 781 KRFHHFRDGKCSCGDYW 797



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/534 (25%), Positives = 234/534 (43%), Gaps = 78/534 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H H++ +GF    ++ N LI++Y+    L+ AR LFDE P  D+V+  +++A Y  
Sbjct: 32  ARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSA 91

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
           A +++ ++ I++  P                             +  +D V ++A+I+ Y
Sbjct: 92  AGDLKLSRKIFSDTP-----------------------------LGMRDSVFYNAMITAY 122

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECY 328
             N     A+ LF +M       D     SVL A A +    K    +H   VK G    
Sbjct: 123 SHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFV 182

Query: 329 INLQNALIHMYSSCGE---------ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            ++ NALI  Y  C           +  A KLFD   N D +SW ++I+GY+K   ++ A
Sbjct: 183 TSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAA 242

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           +   +   +K  V+W+ MISGYA    + E   +F +M    I+ DE T  SVIS C + 
Sbjct: 243 KEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANA 302

Query: 440 VALDQGKWIHAYIRKN----GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
                GK +HAY  K        +   +   LI  Y K G VD A E+F+   E+ + SW
Sbjct: 303 GCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSW 362

Query: 496 NALIIGF-------------------------------AMNGLADKSLEMFSEMKKSGVT 524
           N ++ G+                               A  G A+++L+ F+ MK  G  
Sbjct: 363 NIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFE 422

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P +  F G + +C  +G +  G R  ++ +  +  E +      ++ +  R G++  A  
Sbjct: 423 PCDYAFAGAIISCSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHC 481

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           L  +MP   D  +W A++ A  +HG       +  ++++  + PD   F  ++S
Sbjct: 482 LFINMPCV-DAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVIS 534


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 397/712 (55%), Gaps = 76/712 (10%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKL 188
           D +T+P L +A+    +  +   +H   L+ G    D + +  L++ Y   G +  A + 
Sbjct: 70  DAFTFPPLLRAAQGPGTAAQ---LHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------------------------ 224
           FDE    D+ +WN++L+G        EA  ++ +M                         
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 225 ---------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                          +  +   N+MI ++G+ G + E  ++F  M  +DLV+W+++IS +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           EQ      A+ +F  M D  V  D + ++S+ SA A    +  G SVH   V+ G     
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG----- 301

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
                                 +D G   D+I+ N+++  Y K   +E A+ +FD+M  +
Sbjct: 302 ----------------------WDVG---DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR 336

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWI 448
           D VSW+T+I+GY Q+   SE + ++  MQ H G++P + T VSV+ A +HL AL QG  +
Sbjct: 337 DAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM 396

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           HA   K GL ++  +GT +ID+Y K G +D A+ +F  T  +    WNA+I G  ++G  
Sbjct: 397 HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHG 456

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
            K+L +FS+M++ G++P+ +TFV +L AC H GLVD+G   FN M   + ++P +KHY C
Sbjct: 457 AKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYAC 516

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           MVD+ GRAG L +A + I +MP+ PD A WGALLGAC+ HG+ EMG+   + L EL P +
Sbjct: 517 MVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKN 576

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR--THP 686
            G++VL+SN++A  G+WD V EVR ++ R+ + K PG S IE    ++ F +G++   HP
Sbjct: 577 VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHP 636

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  EI   L ++  K++  GY PD   V  D++++EKE  L  HSE+LAIAFG+I   P 
Sbjct: 637 QHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPR 696

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P+ I KNLR+C DCH A K+IS+  +REI+VRD +RFHHFK G CSC DFW
Sbjct: 697 TPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 116/288 (40%), Gaps = 54/288 (18%)

Query: 27  TINLSILETHLQKCQSFKQFTQILSQMILTGL-IADTFAASRLIKFSTDLLPFIEMSYSF 85
            + L  L + + +C        +   M+  G  + D  A + ++     L    ++  + 
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKL---SKIEAAQ 327

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-----LNNNVGVDNYTYPLLAQA 140
           ++F  +   +   +NT++  Y+Q  +  +AI +Y  M     L    G      P  +  
Sbjct: 328 RMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHL 387

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            AL+    +G  +H   +K G + DVYV   +I++YA CG L  A  LF+++P      W
Sbjct: 388 GALQ----QGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPW 443

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNI----------IASNS----------------- 233
           N++++G     +  +A  ++++M +  I          +A+ S                 
Sbjct: 444 NAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQT 503

Query: 234 -------------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                        M+ +FGR G + +A    + MP K D   W AL+ 
Sbjct: 504 AYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/820 (33%), Positives = 428/820 (52%), Gaps = 73/820 (8%)

Query: 18   VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
            ++A  IF     LS + +   K Q F+   Q+   +I  G  ++T+  + L+   +    
Sbjct: 252  MHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 78   FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
             I      +IF+ + S +G  +N+++   +Q+    +A+ L+  M  + +  D  T   L
Sbjct: 312  LISAE---RIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASL 368

Query: 138  AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
              A A   ++ +G  +H H +KAG  +D+ +  +L+++Y+ C D+  A K F  +   ++
Sbjct: 369  LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENI 428

Query: 198  VSWNSILAGYVNADNVEEAKFIYNKMP--------------------------------- 224
            V WN +L  Y   DN+ ++  I+ +M                                  
Sbjct: 429  VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 225  ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                  + N+   + +I ++ + G +A A R+ + +P+ D+VSW+A+I+ Y Q++M+ EA
Sbjct: 489  VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 279  LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
            L LF  M    +  D +   S +SACA +  ++ G  +HA +                  
Sbjct: 549  LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQS------------------ 590

Query: 339  YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
                         + AG   DL   N++IS Y +CG +++A   F+ + +K+ +SW++++
Sbjct: 591  -------------YAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLV 637

Query: 399  SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            SG AQ   F E L +F+ M       +  T  S ISA   L  + QG+ IH+ + K G  
Sbjct: 638  SGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697

Query: 459  INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                +  +LI +Y K G + +A   F+   E+ V SWNA+I G++ +G   ++L +F EM
Sbjct: 698  SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 519  KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            K  G+ PN +TFVGVL AC H+GLV EG  +F SM + H L P S+HY C+VDLLGRAG 
Sbjct: 758  KVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQ 817

Query: 579  LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            L  A E I+ MP+  D   W  LL AC  H + E+GER    L+EL+P+    +VL+SNI
Sbjct: 818  LDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNI 877

Query: 639  HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
            +A   +W      R +M  RGV K PG S IE    +H F AGD+ HP  N+I   +  +
Sbjct: 878  YAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHL 937

Query: 699  AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
             ++    GY  D+  +  + +Q +K+     HSEKLAIAFGL+++    PIR+MKNLR+C
Sbjct: 938  NRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVC 997

Query: 759  NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            NDCH   K++S+  +R I+VRD HRFHHF  G CSC DFW
Sbjct: 998  NDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/587 (25%), Positives = 267/587 (45%), Gaps = 75/587 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F    + + F +N M+  ++ +    Q  CL++ ML   +  + YT+  + +A     
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 146 SVFEG-KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             F   K +H      GFDS   V N LI++Y+  G + +A+K+F+   + D+V+W +++
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 205 AGYVNADNVEEAKFIYNKM------PERNIIAS--------------------------- 231
           +G       EEA  ++  M      P   +++S                           
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                 N ++ L+ R   +  A R+F  M  +D VS+++LIS   Q    + AL LF  M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               +  D + V S+LSACA++  +  G  +H+ A+K G+   I L+ +L+ +YS     
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS----- 408

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     KC  VE A   F     +++V W+ M+  Y Q D
Sbjct: 409 --------------------------KCADVETAHKFFLTTETENIVLWNVMLVAYGQLD 442

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
             S++  +F +MQ  G+ P++ T  S++  CT L AL  G+ IH ++ K G ++N  + +
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LIDMY K G +  AL +     E  V SW A+I G+  + +  ++L++F EM+  G+  
Sbjct: 503 VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 526 NEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           + I F   + AC  +  + +G + H  S       + +  +   ++ L  R G ++EA  
Sbjct: 563 DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQEAYL 620

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
             E +    ++ +W +L+    + G  E   +V  +++  + + + F
Sbjct: 621 AFEKIGDKNNI-SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMF 666



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 248/534 (46%), Gaps = 75/534 (14%)

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           I L   M    V  +   Y  L +      S+FE   +H  + K+GFD +  + ++L++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI------- 228
           Y   GD   A K+FDE+    + SWN ++  +V   +  +   ++ +M    I       
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 229 ---------------------------------IASNSMIVLFGRKGNVAEACRLFKEMP 255
                                            + +N +I L+ + G +  A ++F  + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            KD+V+W A+IS   QN + EEA++LF +M    +     V+ SVLSA   + + + G  
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H L +K G      + N L+ +YS   ++ +AE++F   ++ D +S+NS+ISG ++ G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
            ++A                               L LF +MQ   ++PD  T+ S++SA
Sbjct: 343 SDRA-------------------------------LELFTKMQRDCLKPDCITVASLLSA 371

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C  + AL +G  +H++  K G+  + IL  +L+D+Y K   V+ A + F  TE + +  W
Sbjct: 372 CASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLW 431

Query: 496 NALIIGFA-MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           N +++ +  ++ L+D S E+F +M+  G+ PN+ T+  +L  C  +G +  G +    +I
Sbjct: 432 NVMLVAYGQLDNLSD-SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +    + N      ++D+  + G L  A  ++  +P   DV +W A++    +H
Sbjct: 491 KT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 19/214 (8%)

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           S+ + L   M+  G+R +    + ++  C    +L +   +H  I K+G     +L  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +D Y + G    A++VF     + V SWN +I  F       +   +F  M   G+TPN 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG---------CMVDLLGRAGM 578
            TF GVL AC  +G    G   FN + Q H     + +YG          ++DL  + G 
Sbjct: 160 YTFAGVLKAC--VG----GDIAFNYVKQVH---SRTFYYGFDSSPLVANLLIDLYSKNGY 210

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ A+++   + M  D+ TW A++    ++G  E
Sbjct: 211 IESAKKVFNCICM-KDIVTWVAMISGLSQNGLEE 243


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/795 (32%), Positives = 418/795 (52%), Gaps = 73/795 (9%)

Query: 40  CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF 99
           C +     Q+ +Q    GL+ D F  S L+          E+  + K+F  +   N   +
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC---GEIELASKMFIGMPEQNDVTW 282

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N ++  Y QR      + L+  M+  +V  + +T   + +  A   ++ +G++IH  ++K
Sbjct: 283 NVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK 342

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN------------------ 201
            G++ + ++   L++MY+ CG    A  +F      D+V W+                  
Sbjct: 343 CGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKL 402

Query: 202 -----------------SILAGYVNADNVEEAKFI----YNKMPERNIIASNSMIVLFGR 240
                            S+L+   N  N++  + I    +    E ++  SN+++ ++ +
Sbjct: 403 FHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK 462

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G V +  +L++ M  +DL+SW+A +S      MY+  L +F +M++   + +    +S+
Sbjct: 463 NGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L +C+ L  V  G  VHA  +K  ++    +  ALI MY+                    
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYA-------------------- 562

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KC  +E A   F+ +  +D+ +W+ +I+ YAQ +Q  + L+ F +MQ  
Sbjct: 563 -----------KCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQE 611

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G++P+E TL   +S C+ L +L+ G+ +H+ + K+G   +  +G+ L+DMY K GC++ A
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             +F     +   +WN +I G+A NG  +K+L  F  M   G++P+ +TF G+L AC H 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG  HFNSM ++  + P   H  CMVD+LGR G   E E+ I+ M +S +   W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           +LGA K H +  +GE+   KL ELQP+ +  ++LLSNI A++GRWDDV  VR +M  +GV
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K PGCS +EANG +H F++ D +HPQI EI   LDE+ ++L    Y P T  V  ++ +
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
            EK+  L  HSE+LA+ F LI+ S    IRI KNLRIC DCH   K IS   ++EIVVRD
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRD 971

Query: 781 RHRFHHFKHGSCSCM 795
             RFHHFK+G+CSC 
Sbjct: 972 VRRFHHFKNGACSCF 986



 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 151/596 (25%), Positives = 272/596 (45%), Gaps = 74/596 (12%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           +Y+  + A +   +   +  +++  +       +I L++ M N  +  + +T     +A 
Sbjct: 164 AYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKAC 223

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +L +++  GK +H    K G   D++V + L+++YA CG++  A K+F   P  + V+WN
Sbjct: 224 SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWN 283

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIAS-----------------------NSMIVLF 238
            +L GY    +V     ++  M E ++  +                       +S+I+  
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 239 GRKGNVAEACRL----------------FKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           G +GN    C L                FK + K D+V WSALI+C +Q    EE++ LF
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M     + ++  + S+LSA  N   ++ G S+HA   K G E  + + NAL+ MY   
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +    KL+++  + DLISWN+ +SG   CG                            
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCG---------------------------- 495

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
               +   L++F  M   G  P+  T +S++ +C+ L  +  G+ +HA+I KN L  N+ 
Sbjct: 496 ---MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + T LIDMY K   +++A   F+    + + +W  +I  +A     +K+L  F +M++ G
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V PNE T  G L  C  +  + EG +  +SM+ +     +      +VD+  + G ++EA
Sbjct: 613 VKPNEFTLAGCLSGCSSLASL-EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           E L E++ +  D   W  ++    ++G         R +++  + PD   F  +LS
Sbjct: 672 EALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/533 (23%), Positives = 240/533 (45%), Gaps = 75/533 (14%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  + +  A + S+   K IH  ++K   + D ++  +L+N+YA C   + AR +  + P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS---------------------- 231
             D+VSW +++ G V      ++ +++ +M    I+ +                      
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 232 -----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                            ++++ L+ + G +  A ++F  MP+++ V+W+ L++ Y Q   
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
               L LF +M++  V  +E  + +VL  CAN   +K G  +H+L +K G E    +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MYS CG    A  +F      D++ W                               
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVW------------------------------- 383

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S +I+   Q  Q  E++ LF  M+     P++ T+ S++SA T+   L  G+ IHA + K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G + +  +   L+ MYMK GCV +  +++    ++ + SWNA + G    G+ D+ L +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M + G  PN  TF+ +LG+C  +  V  G R  ++ I +++L+ N+     ++D+  
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-RQVHAHIIKNQLDDNNFVCTALIDMYA 562

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           +   L++A+     + +  D+ TW  ++     +     GE+      ++Q +
Sbjct: 563 KCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQE 611


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/549 (42%), Positives = 358/549 (65%), Gaps = 4/549 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F    + ++ S+SA+I  + Q+ +++ A   +  M+   V  +     SVL +C+    
Sbjct: 101 VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS---- 156

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +++G  +H  A+K+G+   + ++  L+ +Y+  G++  A +LFD      L+S  +M++ 
Sbjct: 157 LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G ++KAR+LF+ M E+DVV W+ MI GYAQ    +E+L LF  M      P+E T+
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           ++V+SAC  L AL+ G+WIH+YI   G++IN  +GT LIDMY K G +++A  VF    +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K V +WN++I+G+AM+G +  +L++F EM ++G  P +ITF+G+L AC H GLV+EG   
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F  M  ++ +EP  +HYGCMV+LLGRAG L+EA  L+++M ++ D   WG LLG C+ H 
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHV 456

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++GE + + LV+ +  + G +VLLSN++A+ G W+ V ++R +M   G+ K  GCS I
Sbjct: 457 NIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSI 516

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E +  +HEF+AG+R HP+  EI  ML+E+   LK  GY P T  V  D+ +E+KE +L  
Sbjct: 517 EVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEV 576

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLAIAFGLI+  P   ++I+KNLR+C+DCHT  K IS    R+IV+RDR+RFHHF+ 
Sbjct: 577 HSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFED 636

Query: 790 GSCSCMDFW 798
           G CSC D+W
Sbjct: 637 GLCSCGDYW 645



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 198/417 (47%), Gaps = 69/417 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + K +S     QI + ++  GL  +        K          +  S  +F   + PN 
Sbjct: 54  IDKSKSVAHLLQIHASLLRRGLYHNPILN---FKLQRSYAALGRLDCSVFVFNTFDEPNV 110

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F F+ ++ +++Q  +  +A   Y  ML+  V  + +T+  + ++ +L      GK++H  
Sbjct: 111 FSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLE----SGKVLHCQ 166

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G  SD+YV   L+++YA  GD+  AR+LFD                          
Sbjct: 167 AIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFD-------------------------- 200

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                KMPER++++  +M+  + + G + +A  LF+ M ++D+V W+ +I  Y Q+ +  
Sbjct: 201 -----KMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPN 255

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           E+L LF  M+  + + +EV V++VLSAC  L  +++G  +H+     GI+  +++  ALI
Sbjct: 256 ESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALI 315

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MYS CG +  A  +FD   + D+++WNSMI GY                          
Sbjct: 316 DMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGY-------------------------- 349

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
            + G++QH      L LF EM   G +P + T + ++SAC H   +++G+     +R
Sbjct: 350 AMHGFSQH-----ALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMR 401



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 21/285 (7%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  +  +F  ++  +   +N M+  Y Q  VP +++ L++ ML     + N    L   
Sbjct: 222 ELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK-AIPNEVTVLAVL 280

Query: 140 ASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           ++  +L   E G+ IH ++   G   +V+V   LI+MY+ CG L  AR +FD     D+V
Sbjct: 281 SACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVV 340

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM 254
           +WNS++ GY      + A  ++ +M E     ++     ++   G  G V E    F+ M
Sbjct: 341 AWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLM 400

Query: 255 PKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
             K      +  +  +++   +    EEA  L  NM    +  D V+  ++L  C     
Sbjct: 401 RDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMT---IAADPVLWGTLLGCCRLHVN 457

Query: 310 VKAGTSVHALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKL 351
           +K G  +    V   +     Y+ L N    MY++ G      K+
Sbjct: 458 IKLGEEIAKFLVDQKLANSGTYVLLSN----MYAATGNWEGVAKM 498



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           A+L+    +  HL+       IHA + + GL  N IL   L   Y  LG +D ++ VF+ 
Sbjct: 51  ASLIDKSKSVAHLLQ------IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNT 104

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            +E  V S++A+I     + L D++   +S+M   GV PN  TF  VL +C     ++ G
Sbjct: 105 FDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESG 160

Query: 547 HRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMP 590
                  I   +L   S  Y    +VD+  R G +  A +L + MP
Sbjct: 161 KVLHCQAI---KLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMP 203


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 407/718 (56%), Gaps = 37/718 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   + TM+  Y    + + A+  +  M+++ +    +T+  +  + A   
Sbjct: 100 RVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQ 159

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK +H  V+K G    V V N+L+NMYA CGD   A+ +FD   + D  +W     
Sbjct: 160 ALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTW----- 214

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                     N+MI +  +      A  LF +M   D+VSW+++
Sbjct: 215 --------------------------NTMISMHMQFCQFDLALALFDQMTDPDIVSWNSI 248

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           I+ Y        AL  F  M+    +  D+  + SVLSACAN   +K G  +HA  V+  
Sbjct: 249 ITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRAD 308

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMISGYLKCGSVEKARAL 382
           ++    + NALI MY+  G +  A ++ +     +L++I++ S++ GY K G ++ ARA+
Sbjct: 309 VDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAI 368

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD++  +DVV+W+ MI GYAQ+   S+ L LF  M   G +P+  TL +V+S  + L +L
Sbjct: 369 FDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASL 428

Query: 443 DQGKWIHAY-IRKNGLKINSILGTTLIDMYMKLGCVDNALEVF-HGTEEKGVSSWNALII 500
           D GK +HA  IR   +   S+ G  LI MY + G + +A ++F H    +   +W ++I+
Sbjct: 429 DHGKQLHAVAIRLEEVSSVSV-GNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMIL 487

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
             A +GL ++++E+F +M +  + P+ IT+VGVL AC H+GLV++G  +FN M   H +E
Sbjct: 488 SLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIE 547

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P S HY CM+DLLGRAG+L+EA   I +MP+ PDV  WG+LL +C+ H   ++ +    K
Sbjct: 548 PTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEK 607

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L+ + P++ G ++ L+N  ++ G+W+D  +VR  M  + V K  G S ++    +H F  
Sbjct: 608 LLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGV 667

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            D  HPQ + I  M+ ++ K++K  G+ PDT  V  D++QE KE  L  HSEKLAIAF L
Sbjct: 668 EDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFAL 727

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I       +RIMKNLR+CNDCH+A ++IS   +REI+VRD  RFHHFK GSCSC D+W
Sbjct: 728 INTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 258/541 (47%), Gaps = 77/541 (14%)

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDS-DVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           L Q++      F G+ IH  ++K G     V++ N L+N+Y   G  S A +LF      
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLF------ 71

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                    ++MP +   + N+++    + GN+  A R+F E+P
Sbjct: 72  -------------------------DEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIP 106

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           + D VSW+ +I  Y    +++ A+  F+ M+   +   +    +VL++CA    +  G  
Sbjct: 107 QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK 166

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VH+  VK+G    + + N+L++MY+ CG+   A+ +FD     D  +WN+MIS +++   
Sbjct: 167 VHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQ 226

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVIS 434
            + A ALFD M + D+VSW+++I+GY         L  F  M +   ++PD+ TL SV+S
Sbjct: 227 FDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILG------------------------------ 464
           AC +  +L  GK IHA+I +  + I   +G                              
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNV 346

Query: 465 ---TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
              T+L+D Y K+G +D A  +F   + + V +W A+I+G+A NGL   +L +F  M + 
Sbjct: 347 IAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE 406

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYG-CMVDLLGRAGML 579
           G  PN  T   VL     +  +D G +     I   RLE  +S   G  ++ +  R+G +
Sbjct: 407 GPKPNNYTLAAVLSVISSLASLDHGKQLHAVAI---RLEEVSSVSVGNALITMYSRSGSI 463

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHG----DHEMGERVGRKLVELQPDHDGFHVLL 635
           K+A ++   +    D  TW +++ +  +HG      E+ E++ R  + L+PDH  +  +L
Sbjct: 464 KDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR--INLKPDHITYVGVL 521

Query: 636 S 636
           S
Sbjct: 522 S 522


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/672 (37%), Positives = 379/672 (56%), Gaps = 46/672 (6%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN---- 227
            I +Y+  GDL  AR LFD+ P  DL +W  +++         EA   YN    +N    
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 228 ------------------------------------IIASNSMIVLFGRKGNVAEACRL- 250
                                               ++  N++I ++G K   +E  RL 
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYG-KCRCSEGARLV 135

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F+ MP +D++SW+++ SCY    +  EAL  F  M  +    + V V S+L AC +L  +
Sbjct: 136 FEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDL 195

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           K+G  VH   V+ G+   + + +AL++MY+SC  I  A+ +FD+    D +SWN +I+ Y
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255

Query: 371 LKCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                 EK  ++F  M+ + V     SW+ +I G  Q+ +  + L +   MQ+ G +P++
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQ 315

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+ SV+ ACT+L +L  GK IH YI ++    +    T L+ MY K G ++ +  VF  
Sbjct: 316 ITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSM 375

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             ++   SWN +II  +M+G  +++L +F EM  SGV PN +TF GVL  C H  LVDEG
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
              F+SM ++H +EP++ H+ CMVD+L RAG L+EA E I+ MP+ P    WGALLG C+
Sbjct: 436 LLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCR 495

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            + + E+G     +L E++ D+ G +VLLSNI  S   W +  E R +M  RGV K PGC
Sbjct: 496 VYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGC 555

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S I+    +H F+ GD+++ Q +EI   LD M +K+++ GY P+T  V  D+DQEEKE  
Sbjct: 556 SWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEV 615

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLA+AFG++ ++  + IR+ KNLRIC DCH A KF+++    +I+VRD  RFHH
Sbjct: 616 LCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHH 675

Query: 787 FKHGSCSCMDFW 798
           F+ G CSC DFW
Sbjct: 676 FRDGLCSCQDFW 687



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 198/492 (40%), Gaps = 108/492 (21%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRL 145
           +F  +  P+   +  ++ A  +     +AI  Y    + N V  D      +A+A A   
Sbjct: 33  LFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLR 92

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V   K +H+  ++ GF SDV + N LI+MY  C     AR +F+  P  D++SW S+ +
Sbjct: 93  DVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMAS 152

Query: 206 GYVNADNVEEAKFIYNKM---PER------------------------------------ 226
            YVN   + EA   + KM    ER                                    
Sbjct: 153 CYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGG 212

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N+  S++++ ++    ++ +A  +F  M ++D VSW+ LI+ Y  N+  E+ L +F  M+
Sbjct: 213 NVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMM 272

Query: 287 DHRVMV-----------------------------------DEVVVVSVLSACANLTVVK 311
              V +                                   +++ + SVL AC NL  ++
Sbjct: 273 SEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLR 332

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H    +      +    AL+ MY+ CG++  + ++F      D +SWN+MI    
Sbjct: 333 GGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATS 392

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
             G+ E+A                               L LF EM   G+RP+  T   
Sbjct: 393 MHGNGEEA-------------------------------LLLFREMVDSGVRPNSVTFTG 421

Query: 432 VISACTHLVALDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-E 489
           V+S C+H   +D+G  I  +  R + ++ ++   + ++D+  + G ++ A E       E
Sbjct: 422 VLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIE 481

Query: 490 KGVSSWNALIIG 501
               +W AL+ G
Sbjct: 482 PTAGAWGALLGG 493



 Score = 40.8 bits (94), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLA 138
           ++  S ++F+ +   +   +NTM+ A       ++A+ L++ M+++ V  ++ T+  +L+
Sbjct: 365 DLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLS 424

Query: 139 QASALRLSVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             S  RL V EG LI D + +    + D   ++ ++++ +  G L  A +   + P+   
Sbjct: 425 GCSHSRL-VDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPT 483

Query: 198 V-SWNSILAGYVNADNVEEAKFIYNKMPE 225
             +W ++L G     NVE  +   N++ E
Sbjct: 484 AGAWGALLGGCRVYKNVELGRIAANRLFE 512


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/694 (37%), Positives = 387/694 (55%), Gaps = 81/694 (11%)

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDS 164
           Y+ R +PQ +  LY  ++                A+ LR    E GK +H H   + F  
Sbjct: 54  YLHR-IPQPSPRLYSTLI----------------AACLRHRKLELGKRVHAHTKASNFIP 96

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
            + ++N LI+MYA CG L  A+ LFDE                               +P
Sbjct: 97  GIVISNRLIHMYAKCGSLVDAQMLFDE-------------------------------IP 125

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           ++++ + N+MI  +   G + +A +LF EMP +D  SW+A+IS Y     Y EAL LF  
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRM 185

Query: 285 MIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
           M ++     +   + S L+A A ++ ++ G  +H   ++ G+E                 
Sbjct: 186 MQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLE----------------- 228

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                         LD + W +++  Y KCGS+ +AR +FD M +KD+VSW+TMI    +
Sbjct: 229 --------------LDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFE 274

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             +  E  SLF ++   G+RP+E T   V++AC  L A   GK +H Y+ + G    S  
Sbjct: 275 DGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFA 334

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
            + L+ +Y K G  + A  VF+      + SW +LI+G+A NG  D +L+ F  + +SG 
Sbjct: 335 ASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGT 394

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+EITFVGVL AC H GLVD G  +F+S+ ++H L   + HY C++DLL R+G  KEAE
Sbjct: 395 KPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAE 454

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
            +I++MPM PD   W +LLG C+ HG+ E+ ER  + L EL+P++   ++ LSNI+A+ G
Sbjct: 455 NIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAG 514

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
            W +  +VR  M  RG+VK PG S IE    +H FL GD +HP+I++I   L E++KK+K
Sbjct: 515 LWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMK 574

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            EGY  DT  V  D+++E+KE  +F HSEKLA+AFG+I+ SP  PI++ KNLR C DCH 
Sbjct: 575 EEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHN 634

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           A K+IS+   R+I+VRD +RFH F  GSCSC D+
Sbjct: 635 AMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 178/383 (46%), Gaps = 47/383 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALR 144
           K+F  +   + F +N ++  Y+ +    +A+ L+++M  N     N +T      A+A  
Sbjct: 150 KLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAI 209

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S+  GK IH +++++G + D  V   L+++Y  CG L+ AR +FD+    D+VSW +++
Sbjct: 210 SSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMI 269

Query: 205 -------------------------------AGYVN--ADNVEE--AKFIYNKMPERNI- 228
                                          AG +N  AD   E   K ++  M      
Sbjct: 270 HRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYD 329

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               A+++++ ++ + GN   A R+F +MP+ DLVSW++LI  Y QN   + AL  F ++
Sbjct: 330 PFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESL 389

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGE 344
           +      DE+  V VLSAC +  +V  G    H++  K G+    +    +I + +  G 
Sbjct: 390 LRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGR 449

Query: 345 ITTAEKLFD-AGHNLDLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMIS 399
              AE + D      D   W S++ G    G++E     A+ALF+   E +  ++ T+ +
Sbjct: 450 FKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPE-NPATYITLSN 508

Query: 400 GYAQHDQFSETLSLFMEMQHHGI 422
            YA    ++E   +  +M + GI
Sbjct: 509 IYANAGLWTEETKVRNDMDNRGI 531



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 54/311 (17%)

Query: 396 TMISGYAQHDQFSETLSLFMEMQ---------HHGIRPDEATLVSVISACTHLVALDQGK 446
           T +S +++H +F E + LF +           H   +P      ++I+AC     L+ GK
Sbjct: 24  TTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGK 83

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +HA+ + +      ++   LI MY K G + +A  +F    +K + SWN +I G+A  G
Sbjct: 84  RVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVG 143

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR-------- 558
             +++ ++F EM             G +    +M  +D        M+QE+         
Sbjct: 144 RIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALD-----LFRMMQENESSNCNMFT 198

Query: 559 ----------------------------LEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
                                       LE +   +  ++DL G+ G L EA  + + M 
Sbjct: 199 LSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMA 258

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSNIHASKGRWDDV 648
              D+ +W  ++  C + G  + G  + R L+   ++P+   F  +L N  A        
Sbjct: 259 -DKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL-NACADLAAEQMG 316

Query: 649 LEVRGMMVRRG 659
            EV G M R G
Sbjct: 317 KEVHGYMTRVG 327


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/553 (44%), Positives = 338/553 (61%), Gaps = 40/553 (7%)

Query: 255 PKKDLVSWSALISCYEQNEMYEEA-----LVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           P  +   W+ LI  + Q            + +F+ M  H V  D      +L + A+ ++
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +  G SVHA  ++ G+     +Q +LI MYSS                            
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSS--------------------------- 112

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI---RPDE 426
               G V+ AR LF  M E++V+SWS MI+GY +  Q+ E L+LF EMQ  G+   RP+E
Sbjct: 113 ----GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 168

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+  V++AC  L AL+ GKW HAYI K G+ ++ +LGT LIDMY K G V+ A  VF  
Sbjct: 169 FTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSN 228

Query: 487 T-EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K V +W+A+I G AM+GLA++ + +FS+M   GV PN +TF+ V  AC H GLV E
Sbjct: 229 LGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSE 288

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +   M +++ + P  +HYGCMVDL GRAG +KEA  +++SMPM PDV  WGALL   
Sbjct: 289 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGS 348

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + HGD E  E   +KL+EL+P + G +VLLSN++A +GRW+DV  VR +M   G+ K+PG
Sbjct: 349 RMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPG 408

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           CS+IE  G++HEF  GD +HP+  +I  ML+E+ ++LK+EGY  +T EV  D+D+E KE 
Sbjct: 409 CSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKEL 468

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLA+A+G +  SP  PIRI+KNLRIC DCH A K IS+ FDREI+VRD +RFH
Sbjct: 469 ALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFH 528

Query: 786 HFKHGSCSCMDFW 798
           HF  G CSC D+W
Sbjct: 529 HFTQGLCSCRDYW 541



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 211/495 (42%), Gaps = 70/495 (14%)

Query: 97  FIFNTMMRAYIQ-RNVP----QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           F++NT++RA++Q R  P       I ++  M  + V  D +T+P L Q+ A    +  G+
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H  +L+ G   D +V  +LI+MY+  G +  AR LF   P  +++SW+ ++ GYV   
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCG 144

Query: 212 NVEEAKFIYNKM---------PER---------------------------------NII 229
             +EA  ++ +M         P                                   +++
Sbjct: 145 QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVV 204

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEM-PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              ++I ++ + G+V +A  +F  + P KD+++WSA+IS    + + EE + LF  MI+ 
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 264

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            V  + V  ++V  AC +  +V  G   +  +     I   I     ++ +Y   G I  
Sbjct: 265 GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKE 324

Query: 348 AEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV---SWSTMISGYAQ 403
           A  +  +     D++ W +++SG    G +E        +IE +     ++  + + YA+
Sbjct: 325 AWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAK 384

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             ++ +   +   M+  GI+  +    S+I     L     G   H   R+  + +  IL
Sbjct: 385 RGRWEDVRHVRDLMETMGIK--KVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 442

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
               ++ Y     V N  EV    +E+G           A++  ++K    +  +K S  
Sbjct: 443 ERLKVEGY-----VGNTKEVLLDLDEEGKE--------LALSLHSEKLALAYGFLKTSPG 489

Query: 524 TPNEITFVGVLGACR 538
           TP  I  V  L  CR
Sbjct: 490 TP--IRIVKNLRICR 502



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 52/264 (19%)

Query: 51  SQMILTGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
           +Q++  GL  D F  + LI  +S+  L  ++M+ +  +FA +   N   ++ M+  Y++ 
Sbjct: 88  AQILRFGLAIDPFVQTSLISMYSSSGL--VDMARN--LFAVMPERNVISWSCMINGYVRC 143

Query: 110 NVPQQAICLYKLMLN---NNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSD 165
              ++A+ L++ M     N+V  + +T   +  A   RL   E GK  H ++ K G   D
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG-RLGALEHGKWAHAYIDKCGMPVD 202

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVEEAKFIYNKM- 223
           V +   LI+MYA CG +  A  +F    P  D+++W+++++G       EE   +++KM 
Sbjct: 203 VVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI 262

Query: 224 -----------------------------------PERNIIAS----NSMIVLFGRKGNV 244
                                               + +II +      M+ L+GR G +
Sbjct: 263 NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRI 322

Query: 245 AEACRLFKEMP-KKDLVSWSALIS 267
            EA  + K MP + D++ W AL+S
Sbjct: 323 KEAWNVVKSMPMEPDVLVWGALLS 346


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/689 (37%), Positives = 380/689 (55%), Gaps = 71/689 (10%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H  ++ AG+    ++ N L+NMY+ CG+L  A KLFD  P  +LVSW ++++G   
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 210 ADNVEEA------KFIYNKMPER---------------------------------NIIA 230
                EA        I  ++P +                                  +  
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            +++  ++ + G + +AC++F+EMP KD VSW+A+I  Y +   +EEAL+ F  MID  V
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            +D+ V+ S L AC  L   K G SVH+  VK+G E  I + NAL  MYS          
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS---------- 253

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSE 409
                                K G +E A  +F    E ++VVS++ +I GY + +Q  +
Sbjct: 254 ---------------------KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            LS+F+E++  GI P+E T  S+I AC +  AL+QG  +HA + K     +  + + L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G ++ A++ F    +    +WN+L+  F  +GL   ++++F  M   GV PN IT
Sbjct: 353 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAIT 412

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+ +L  C H GLV+EG  +F SM + + + P  +HY C++DLLGRAG LKEA+E I  M
Sbjct: 413 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  P+   W + LGAC+ HGD EMG+    KLV+L+P + G  VLLSNI+A++ +W+DV 
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 532

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR  M    V K+PG S ++     H F A D +HP+ + I   LD +  ++K  GY P
Sbjct: 533 SVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP 592

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
            T  V  D+D   KE  L RHSE++A+AF LI++    PI + KNLR+C DCH+A KFIS
Sbjct: 593 RTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFIS 652

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   R+I+VRD  RFHHF  GSCSC D+W
Sbjct: 653 KVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 202/447 (45%), Gaps = 49/447 (10%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +++T+  K +  ++  Q+ + +I  G    TF  + L+   +      E+ ++ K+F  +
Sbjct: 11  VIQTY-AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG---ELDHALKLFDTM 66

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              N   +  M+    Q +   +AI  +  M         + +    +A A   S+  GK
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   LK G  S+++V + L +MY+ CG +  A K+F+E P  D VSW +++ GY    
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 212 NVEEAKFIYNKMP---------------------------------------ERNIIASN 232
             EEA   + KM                                        E +I   N
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 233 SMIVLFGRKGNVAEACRLFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           ++  ++ + G++  A  +F  +   +++VS++ LI  Y + E  E+ L +F+ +    + 
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +E    S++ ACAN   ++ GT +HA  +KI  +    + + L+ MY  CG +  A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 366

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQF 407
           FD   +   I+WNS++S + + G  + A  +F+ M+++ V    +++ ++++G +     
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 408 SETLSLFMEM-QHHGIRPDEATLVSVI 433
            E L  F  M + +G+ P E     VI
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVI 453



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 3/216 (1%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D   L  VI        L +GK +HA +   G    + L   L++MY K G +D+AL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               ++ + SW A+I G + N    +++  F  M+  G  P +  F   + AC  +G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G +  + +  +  +         + D+  + G + +A ++ E MP   +V +W A++  
Sbjct: 124 MG-KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDG 181

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
             K G+ E      +K+++ +   D  HVL S + A
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQ-HVLCSTLGA 216



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 9/237 (3%)

Query: 27  TINLSILETHLQKCQSFK--QFTQ-ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           TI+  +L + L  C + K  +F + + S ++  G  +D F  + L    +        S 
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
            F I +  E  N   +  ++  Y++    ++ + ++  +    +  + +T+  L +A A 
Sbjct: 264 VFGIDS--ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN 321

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           + ++ +G  +H  V+K  FD D +V++ L++MY  CG L  A + FDE      ++WNS+
Sbjct: 322 QAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSL 381

Query: 204 LAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           ++ +      ++A  I+ +M +R    N I   S++      G V E    F  M K
Sbjct: 382 VSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 438


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/730 (36%), Positives = 399/730 (54%), Gaps = 55/730 (7%)

Query: 90  FLESP----NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           F E+P    +   +N M+  Y   N    AI L++ M   N   D++T+  +  AS L  
Sbjct: 102 FNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTL-- 159

Query: 146 SVF----EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---------LSAARKLFDES 192
            +F    +   +H  V+K G +    V N L+++Y  C           +++ARKLFDE 
Sbjct: 160 -IFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDE- 217

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                         MP+RN     ++I  + R G++  A  +  
Sbjct: 218 ------------------------------MPKRNEFIWTTLITGYVRNGDLTGAREILD 247

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            M ++  ++W+A+IS Y  + ++E+AL LF  M    V VDE    SV+SACA+      
Sbjct: 248 TMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLL 307

Query: 313 GTSVHALAVKIGI----ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           G  VHA  +K  +    +  +++ N LI +Y   G++  A K+F      D+I+WN+++S
Sbjct: 308 GKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLS 367

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           GY+  G +E+A++ F  M EK++++W+ MISG AQ+    + L LF +M+  G  P++  
Sbjct: 368 GYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYA 427

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
               I+AC+ L AL+ G+ +HA I   G      +G  +I MY + G V+ A  +F    
Sbjct: 428 FAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMP 487

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
                SWN++I     +G   K++E++ +M K G+ P+  TF+ VL AC H GLV+EG+R
Sbjct: 488 FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNR 547

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +FNSM++ + + P   HY  M+DL  RAG   +A+ +I+SMP       W ALL  C+ H
Sbjct: 548 YFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTH 607

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
           G+ ++G     KL +L P HDG +VLLSN++AS GRW+DV   R +M  RGV K P CS 
Sbjct: 608 GNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSW 667

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
            E    +H FL  D  HP++  I N L+++  ++K  GY PDT  V  D++ E KE  L 
Sbjct: 668 TEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALS 727

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AFGL+ +     +R+ KNLRIC DCH A KF+S+   REIVVRD  RFHHFK
Sbjct: 728 THSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFK 787

Query: 789 HGSCSCMDFW 798
           +G CSC ++W
Sbjct: 788 NGECSCRNYW 797



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 246/541 (45%), Gaps = 92/541 (17%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H HV+ +GF    ++ N LI++Y    D   ARKLFDE P  D+++  +++  Y  
Sbjct: 32  ARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSA 91

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
             N++ A+ I+N+ P                             +  +D V ++A+I+ Y
Sbjct: 92  LGNLKMAREIFNETP-----------------------------LDMRDTVFYNAMITGY 122

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGIECY 328
                   A+ LF  M       D+    SVLSA   +    +    +H   VK GIE +
Sbjct: 123 SHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIF 182

Query: 329 INLQNALIHMYSSCG---------EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             + NAL+ +Y  C           + +A KLFD     +   W ++I+GY++ G +  A
Sbjct: 183 PAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGA 242

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R + D M E+  ++W+ MISGY  H  F + L+LF +M+  G++ DE+T  SVISAC   
Sbjct: 243 REILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADG 302

Query: 440 VALDQGKWIHAYIRKNGLKINS----ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
                GK +HAYI KN L  +      +G TLI +Y K G VD A ++F+    K + +W
Sbjct: 303 GFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITW 362

Query: 496 NALIIGF-------------------------------AMNGLADKSLEMFSEMKKSGVT 524
           N L+ G+                               A NG  +++L++F++MK  G  
Sbjct: 363 NTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYE 422

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           PN+  F G + AC  +G ++ G R  ++ I     +        M+ +  R G+++ A  
Sbjct: 423 PNDYAFAGAITACSVLGALENG-RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAART 481

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ---------PDHDGFHVLL 635
           +  +MP   D  +W +++ A  +HG        G K +EL          PD   F  +L
Sbjct: 482 MFLTMPFV-DPVSWNSMIAALGQHGH-------GVKAIELYEQMLKEGILPDRRTFLTVL 533

Query: 636 S 636
           S
Sbjct: 534 S 534



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 205/477 (42%), Gaps = 99/477 (20%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQR------------------------------- 109
           M+ + K+F  +   N FI+ T++  Y++                                
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD---- 165
            + + A+ L++ M    V VD  TY  +  A A       GK +H ++LK   + D    
Sbjct: 268 GLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFL 327

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
           + V NTLI +Y   G +  ARK+F E PV D+++WN++L+GYVNA  +EEAK  + +MPE
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           +N++    MI    + G   +A +LF +M           +  YE N             
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMK----------LDGYEPN------------- 424

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                   +      ++AC+ L  ++ G  +HA  V +G +  +++ NA+I MY+ CG +
Sbjct: 425 --------DYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIV 476

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  +F     +D +SWNSM                               I+   QH 
Sbjct: 477 EAARTMFLTMPFVDPVSWNSM-------------------------------IAALGQHG 505

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILG 464
              + + L+ +M   GI PD  T ++V+SAC+H   +++G ++ ++ +   G+       
Sbjct: 506 HGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHY 565

Query: 465 TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             +ID++ + G   +A  V      E     W AL+ G   +G  D  +E   ++ K
Sbjct: 566 ARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK 622



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 51/377 (13%)

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
           N++D RV+ +       L    NL+      +VH   +  G +   ++ N LI +Y    
Sbjct: 3   NVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSS 62

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD--AMIEKDVVSWSTMISGY 401
           +   A KLFD     D+I+  ++I+ Y   G+++ AR +F+   +  +D V ++ MI+GY
Sbjct: 63  DFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGY 122

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD--QGKWIHAYIRKNGLKI 459
           +  +     + LF  M+    +PD+ T  SV+SA T L+  D  Q   +H  + K G++I
Sbjct: 123 SHMNDGHSAIELFRAMRWANFQPDDFTFASVLSAST-LIFYDERQCGQMHGTVVKFGIEI 181

Query: 460 ----------------------------------------NSILGTTLIDMYMKLGCVDN 479
                                                   N  + TTLI  Y++ G +  
Sbjct: 182 FPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTG 241

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A E+     E+   +WNA+I G+  +GL + +L +F +M+  GV  +E T+  V+ AC  
Sbjct: 242 AREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACAD 301

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHY----GCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            G    G +  ++ I ++ L P+          ++ L  + G +  A ++   MP+  D+
Sbjct: 302 GGFFLLG-KQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DI 359

Query: 596 ATWGALLGACKKHGDHE 612
            TW  LL      G  E
Sbjct: 360 ITWNTLLSGYVNAGRME 376


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/760 (35%), Positives = 409/760 (53%), Gaps = 79/760 (10%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           +  +F  +E PN   +  ++ A+ +    ++A+  Y+ M+   +  D   + +     + 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 144 RLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              + +G+L+H  +L+    + D+ +   LI MYA C DL  ARK FDE     LV+WN+
Sbjct: 71  SKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 203 ILAGYVNADNVEEAKFIYNKM----PE-------------------------RNI----- 228
           ++AGY    +   A  IY  M    PE                         R I     
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTV 190

Query: 229 --------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                   I  N++I ++ + G++  A ++F  +  +D+++W+ +IS Y +     +AL 
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF  M  +    + V  + +L+AC NL  ++ G ++H                       
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH----------------------- 287

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS-VEKARALFDAMIEKDVVSWSTMIS 399
                    K+ + G+  DL+  N +++ Y KC S +E+AR +F+ +  +DV++W+ +I 
Sbjct: 288 --------RKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIV 339

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y Q+ Q  + L +F +MQ   + P+E TL +V+SAC  L A  QGK +HA I     K 
Sbjct: 340 AYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKA 399

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           + +L  +L++MY + G +D+ + VF    +K + SW+ LI  +A +G +   LE F E+ 
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           + G+  +++T V  L AC H G++ EG + F SM+ +H L P+ +H+ CMVDLL RAG L
Sbjct: 460 QEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRL 519

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV-LLSNI 638
           + AE LI  MP  PD   W +LL  CK H D +   RV  KL EL+ + +   V LLSN+
Sbjct: 520 EAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNV 579

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A  GRWDDV + R    RR   K PGCS IE N  +HEF+AGD++HP+   I   +  +
Sbjct: 580 YAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRL 636

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           +K++K  GY PD   V  ++ +EEKE  L  HSEKLAIA+GLI+  P  P+ I+KNLR C
Sbjct: 637 SKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRAC 696

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH AAKFISR   R+IVVRD  RFHHF++GSCSC D+W
Sbjct: 697 VDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 223/484 (46%), Gaps = 77/484 (15%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------- 224
           MY  CG ++ A  +F      + VSW  I+A +    +  EA   Y +M           
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 225 ------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                         E +II   ++I ++ R  ++  A + F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR---VMVDEVVVVSVLSACANLTVVK 311
            KK LV+W+ALI+ Y +N  +  AL ++ +M+      +  D +   S L AC+ +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  + A  V  G      +QNALI+MYS CG + +A K+FD   N D+I+WN+MISGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           K G+  +A                               L LF  M  +  +P+  T + 
Sbjct: 241 KQGAATQA-------------------------------LELFQRMGPNDPKPNVVTFIG 269

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-GCVDNALEVFHGTEEK 490
           +++ACT+L  L+QG+ IH  ++++G + + ++G  L++MY K    ++ A +VF     +
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V +WN LI+ +   G A  +L++F +M+   V PNEIT   VL AC  +G   +G +  
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAV 388

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +++I   R + +      ++++  R G L +   +  ++     + +W  L+ A  +HG 
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAYAQHGH 447

Query: 611 HEMG 614
              G
Sbjct: 448 SRTG 451



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 188/411 (45%), Gaps = 49/411 (11%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  +I ++ + +G  +D+   + LI   +       +  + K+F  L++ +   +NTM+ 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKC---GSLESARKVFDRLKNRDVIAWNTMIS 237

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y ++    QA+ L++ M  N+   +  T+  L  A      + +G+ IH  V + G++S
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYES 297

Query: 165 DVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           D+ + N L+NMY  C   L  AR++F+     D+++WN ++  YV     ++A  I+ +M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 224 PERNI-----------------------------IAS----------NSMIVLFGRKGNV 244
              N+                             IAS          NS++ ++ R G++
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            +   +F  +  K LVSWS LI+ Y Q+      L  F  ++   +  D+V +VS LSAC
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 305 ANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLIS 362
           ++  ++K G  S  ++    G+         ++ + S  G +  AE L  D     D ++
Sbjct: 478 SHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 363 WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISG-YAQHDQFSE 409
           W S++SG       ++A  + D + E   +D  S  T++S  YA+  ++ +
Sbjct: 538 WTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD 588



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G V +AL VFH  E     SW  ++  FA NG   ++L  +  M   G+ P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           FV  +G C     + +G      +++   LE +      ++ +  R   L+ A +  + M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
                + TW AL+    ++GDH    ++ + +V   P+
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/563 (42%), Positives = 359/563 (63%), Gaps = 7/563 (1%)

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCY-EQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           + G++  A +LF  +P  D   ++ L   +   ++    +L+ + +M+ H V  +     
Sbjct: 48  KHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFP 107

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           S++ AC    + +    +HA  +K G        N LIH+Y + G +  A ++F    + 
Sbjct: 108 SLIRAC---KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDP 164

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           +++SW S++SGY + G V++A  +F+ M  +K+ VSW+ MI+ + + ++F E  +LF  M
Sbjct: 165 NVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRM 224

Query: 418 Q-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           +    +  D     +++SACT + AL+QG WIH Y+ K G+ ++S L TT+IDMY K GC
Sbjct: 225 RVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGC 284

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLG 535
           +D A  VF G + K VSSWN +I GFAM+G  + ++ +F EM++   V P+ ITFV VL 
Sbjct: 285 LDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLT 344

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV+EG  +F  M+  H ++P  +HYGCMVDLL RAG L+EA+++I+ MPMSPD 
Sbjct: 345 ACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDA 404

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           A  GALLGAC+ HG+ E+GE VG +++EL P++ G +V+L N++AS G+W+ V  VR +M
Sbjct: 405 AVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLM 464

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
             RGV K PG SMIE  G+++EF+AG R HP    I   + EM + +++ G+ PDT  V 
Sbjct: 465 DDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVL 524

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+ +EE+E  LF HSEKLAIA+GL+       +R+ KNLR+C DCH A+K IS+ +D +
Sbjct: 525 HDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCD 584

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I++RDR RFHHF +G CSC D+W
Sbjct: 585 IIIRDRSRFHHFSNGECSCKDYW 607


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 379/659 (57%), Gaps = 74/659 (11%)

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER---------- 226
           + A K+FD+ P  +LV+W  ++  +       +A  ++  M      P+R          
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 227 -----------------------NIIASNSMIVLFGR---KGNVAEACRLFKEMPKKDLV 260
                                  ++    S++ ++ +    G+V ++ ++F++MP+ +++
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 261 SWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           SW+A+I+ Y Q+ E  +EA+ LF  MI   +  +     SVL AC NL+    G  V++ 
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
           AVK+GI                               +++ +  NS+IS Y + G +E A
Sbjct: 182 AVKLGIA------------------------------SVNCVG-NSLISMYARSGRMEDA 210

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R  FD + EK++VS++ ++ GYA++ +  E   LF E+   GI     T  S++S    +
Sbjct: 211 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 270

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            A+ +G+ IH  + K G K N  +   LI MY + G ++ A +VF+  E++ V SW ++I
Sbjct: 271 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 330

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            GFA +G A ++LEMF +M ++G  PNEIT+V VL AC H+G++ EG +HFNSM +EH +
Sbjct: 331 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 390

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
            P  +HY CMVDLLGR+G+L EA E I SMP+  D   W  LLGAC+ HG+ E+G     
Sbjct: 391 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 450

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
            ++E +PD    ++LLSN+HAS G+W DV+++R  M  R ++K  GCS IE    +H F 
Sbjct: 451 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 510

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
            G+ +HPQ  +I   LD++A K+K  GY PDT  V  DI++E+KE  LF+HSEK+A+AFG
Sbjct: 511 VGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFG 570

Query: 740 LITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LI+ S   PIRI KNLR+C DCHTA K+IS A  REIVVRD +RFHH K+G CSC D+W
Sbjct: 571 LISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 177/385 (45%), Gaps = 42/385 (10%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+ S++I  GL  D      L+           +  S K+F  +   N   +  ++ AY 
Sbjct: 72  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 131

Query: 108 QRN-VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           Q     ++AI L+  M++ ++  +++++  + +A       + G+ ++ + +K G  S  
Sbjct: 132 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN 191

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
            V N+LI+MYA  G +  ARK FD     +LVS+N+I+ GY      EEA  ++N++ + 
Sbjct: 192 CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 251

Query: 227 NIIAS---------------------------------------NSMIVLFGRKGNVAEA 247
            I  S                                       N++I ++ R GN+  A
Sbjct: 252 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 311

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            ++F EM  ++++SW+++I+ + ++     AL +F  M++     +E+  V+VLSAC+++
Sbjct: 312 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 371

Query: 308 TVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNS 365
            ++  G    +++  + GI   +     ++ +    G +  A +  ++   + D + W +
Sbjct: 372 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 431

Query: 366 MISGYLKCGSVEKARALFDAMIEKD 390
           ++      G+ E  R   + ++E++
Sbjct: 432 LLGACRVHGNTELGRHAAEMILEQE 456


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/690 (35%), Positives = 394/690 (57%), Gaps = 74/690 (10%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLVSWNSILAGY 207
           G++IH  V+K GF+ +V+V   L++MYA C  +S A  LF   E    + V W +++ GY
Sbjct: 181 GEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGY 240

Query: 208 V-NADN---VEEAKFIYNKMPE-----------------------------------RNI 228
             N D    VE  ++++ +  E                                    N+
Sbjct: 241 AQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNV 300

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              ++++ ++ + G++  A  + + M   D+VSW++L+  + ++ + EEAL LF NM   
Sbjct: 301 YVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGR 360

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            + +D+    SVL+ C   ++     SVH L +K G E Y  + NAL+ MY+        
Sbjct: 361 NMKIDDYTFPSVLNCCVVGSI--NPKSVHGLIIKTGFENYKLVSNALVDMYA-------- 410

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  K G ++ A  +F+ M+EKDV+SW+++++GYAQ++   
Sbjct: 411 -----------------------KTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHE 447

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E+L +F +M+  G+ PD+  + S++SAC  L  L+ GK +H    K+GL+ +  +  +L+
Sbjct: 448 ESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLV 507

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY K GC+D+A  +F   + K V +W A+I+G+A NG    SL+ +  M  SG  P+ I
Sbjct: 508 AMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFI 567

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+G+L AC H GLVDEG ++F  M + + ++P  +HY CM+DL GR+G L EA++L++ 
Sbjct: 568 TFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQ 627

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           M + PD   W +LL AC+ H + E+ ER    L EL+P +   +V+LSN++++  +W+DV
Sbjct: 628 MDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDV 687

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            ++R +M  +G+VK PGCS +E N  ++ F++ DR HP+  EI   +DE+  ++K  GY 
Sbjct: 688 AKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYV 747

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PD      D+D+E KE  L  HSEKLA+AFGL+   P  PIRI KNLR+C DCH+A K+I
Sbjct: 748 PDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYI 807

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           SR F R I++RD + FHHF+ G CSC D+W
Sbjct: 808 SRVFTRHIILRDSNCFHHFREGECSCGDYW 837


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/778 (34%), Positives = 433/778 (55%), Gaps = 83/778 (10%)

Query: 62  TFAASRLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI- 116
            F  S+ I  ST L+       ++S S   F ++   N F +N+++ AY++     +A+ 
Sbjct: 47  VFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMN 106

Query: 117 C---LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           C   L+ +    ++  D YT+P + +A    +S+ +GK +H  V K GF+ DV+V  +L+
Sbjct: 107 CVNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLV 163

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------- 224
           ++Y+  G L  A K+F + PV D+ SWN++++G+    N   A  + N+M          
Sbjct: 164 HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223

Query: 225 ------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                         + ++  SN++I ++ + G + +A  +F +M
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +DLVSW+++I+ YEQN     AL  F  M    +  D + VVS+ S  + L+  +   
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 315 SVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           S+    ++   ++  + + NAL++MY+  G                          Y+ C
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLG--------------------------YMNC 377

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSV 432
                A  +FD +  KD +SW+T+++GY Q+   SE +  +  M+      P++ T VS+
Sbjct: 378 -----AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSI 432

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           I A +H+ AL QG  IHA + KN L ++  + T LID+Y K G +++A+ +F+       
Sbjct: 433 IPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS 492

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
             WNA+I    ++G  +++L++F +M    V  + ITFV +L AC H GLVDEG + F+ 
Sbjct: 493 VPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDI 552

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M +E+ ++P+ KHYGCMVDLLGRAG L++A EL+ +MP+ PD + WGALL ACK +G+ E
Sbjct: 553 MQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           +G     +L+E+  ++ G++VLLSNI+A+  +W+ V++VR +   RG+ K PG S +   
Sbjct: 613 LGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVG 672

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
                F  G++THP+  EI   L  ++ K+K  GY PD   V  DI+++EKE  L  HSE
Sbjct: 673 SKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSE 732

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           +LAIAFG+I+  P +PIRI KNLR+C DCH A K+ISR  +REIVVRD +RFHHFK G
Sbjct: 733 RLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 150/530 (28%), Positives = 249/530 (46%), Gaps = 77/530 (14%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H  +L  G   ++ ++  LIN+Y   GD+S +R  FD     ++ SWNSI++ YV  
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 211 DNVEEAKFIYNKM----------P------------------------------ERNIIA 230
               EA    N++          P                              E ++  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFV 158

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           + S++ L+ R G +  A ++F +MP KD+ SW+A+IS + QN     AL +   M    V
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            +D + V S+L  CA    V  G  +H   +K G++  + + NALI+MYS  G +  A+ 
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQM 278

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD     DL+SWNS                               +I+ Y Q++  S  
Sbjct: 279 VFDQMEVRDLVSWNS-------------------------------IIAAYEQNNDPSTA 307

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTTLID 469
           L  F  MQ  GIRPD  T+VS+ S  + L      + I  + IR+  L  + ++G  L++
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNEI 528
           MY KLG ++ A  VF     K   SWN L+ G+  NGLA ++++ ++ M++   T PN+ 
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+V ++ A  H+G + +G +    +I+ + L  +     C++DL G+ G L++A  L   
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLS 636
           +P    V  W A++ +   HG  E   ++ + ++   ++ DH  F  LLS
Sbjct: 487 IPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLS 535



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/531 (24%), Positives = 230/531 (43%), Gaps = 84/531 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+ C S     ++   +   G   D F A+ L+   +    +  +  + K+F  +   + 
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR---YGVLDVAHKVFVDMPVKDV 187

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+  + Q      A+ +   M    V +D  T   +    A    V  G LIH H
Sbjct: 188 GSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLH 247

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G DSDV+V+N LINMY+  G L  A+ +FD+  V DLVSWNSI+A Y   ++   A
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 217 KFIYNKMP----------------------------------------ERNIIASNSMIV 236
              +  M                                         +++++  N+++ 
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEV 295
           ++ + G +  A  +F ++P+KD +SW+ L++ Y QN +  EA+  +  M + R  + ++ 
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             VS++ A +++  ++ G  +HA  +K  +   + +   LI +Y  CG +          
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL---------- 477

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                                E A +LF  +     V W+ +I+    H +  E L LF 
Sbjct: 478 ---------------------EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKL 474
           +M    ++ D  T VS++SAC+H   +D+G+     ++K  G+K +      ++D+  + 
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 475 GCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLA-------DKSLEMFSE 517
           G ++ A E+      +   S W AL+    + G A       D+ LE+ SE
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSE 627



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 43/334 (12%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++ ++C N   V A   +HAL +  G    I L   LI++Y + G+I+ +   FD  H  
Sbjct: 27  ALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK 83

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++ SWNS+IS Y++ G                             H+  +    LF    
Sbjct: 84  NIFSWNSIISAYVRFGKY---------------------------HEAMNCVNQLFSMCG 116

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              +RPD  T   ++ AC  LV    GK +H  + K G + +  +  +L+ +Y + G +D
Sbjct: 117 GGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLD 173

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A +VF     K V SWNA+I GF  NG A  +L + + MK  GV  + IT   +L  C 
Sbjct: 174 VAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCA 233

Query: 539 HMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
               V  G   H H    + +H L+ +      ++++  + G L++A+ + + M +  D+
Sbjct: 234 QSDDVINGVLIHLH----VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DL 288

Query: 596 ATWGALLGACKKHGDHEMGERV--GRKLVELQPD 627
            +W +++ A +++ D     R   G +L  ++PD
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/451 (49%), Positives = 308/451 (68%)

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A+KLF    + +L+   +MISGY + G VE AR +FD M EKD+V WS MISGYA+ D+ 
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L+LF EMQ  GI+PD+ T++SVISAC  L  LD+ KWIH Y+ KNGL     +   L
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G +  A  VF   + + V SW ++I  FA++G A  +L+ F +MK   + PN 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TFVGVL AC H GLV+EG R F SM  EH + P  +HYGCMVDL GRA +L++A EL+E
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           +MP++P+V  WG+L+ AC+ HG++E+GE   ++++EL+PDHDG  V LSNI+A   RW D
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V E+R +M +RG+ K  GCS IE N  ++EF+  D+ H Q ++I   LDE+ K+LKL GY
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGY 361

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            P+T  V  D+++E K+  +  HSEKLA+ +GL+     + IRI+KNLR+C DCHT  K 
Sbjct: 362 TPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKL 421

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +S+ +  EI+VRDR RFHH+K G CSC D+W
Sbjct: 422 VSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 31/231 (13%)

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A+ ++ K+  RN++   +MI  + R G V +A  +F +M +KDLV WSA+IS Y +++  
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           +EAL LF  M    +  D+V ++SV+SACA L V+     +H    K G+   + + NAL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I MY+ CG +  A  +F+   + ++ISW S                              
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTS------------------------------ 151

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            MI+ +A H   S  L  F +M+   I+P+  T V V+ AC+H   +++G+
Sbjct: 152 -MINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGR 201



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 31/274 (11%)

Query: 44  KQFTQILSQ--MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           K FT+I S+  ++LT +I+     SR+ +     L F +M          E  +   ++ 
Sbjct: 4   KLFTKISSRNLVVLTAMIS---GYSRVGRVEDARLIFDQM----------EEKDLVCWSA 50

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKA 160
           M+  Y + + PQ+A+ L+  M    +  D  T   +  A A RL V +  K IH +V K 
Sbjct: 51  MISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACA-RLGVLDRAKWIHMYVDKN 109

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-VNADNVEEAKFI 219
           G    + VNN LI+MYA CG+L AAR +F++    +++SW S++  + ++ D     KF 
Sbjct: 110 GLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFF 169

Query: 220 YNKMPERNIIASNSMI--VLFG--RKGNVAEACRLFKEMPKKDLVS-----WSALISCYE 270
           Y +M + NI  +      VL+     G V E  R F  M  +  ++     +  ++  + 
Sbjct: 170 Y-QMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFG 228

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +  +  +AL L   M    +  + V+  S+++AC
Sbjct: 229 RANLLRDALELVETM---PLAPNVVIWGSLMAAC 259



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 91/193 (47%), Gaps = 39/193 (20%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM- 223
           ++ V   +I+ Y+  G +  AR +FD+    DLV W+++++GY  +D  +EA  ++++M 
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 224 -----PERNIIAS---------------------------------NSMIVLFGRKGNVA 245
                P++  I S                                 N++I ++ + GN+ 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A  +F++M  ++++SW+++I+ +  +     AL  F  M D  +  + V  V VL AC+
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 306 NLTVVKAGTSVHA 318
           +  +V+ G    A
Sbjct: 193 HAGLVEEGRRTFA 205


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/654 (40%), Positives = 378/654 (57%), Gaps = 52/654 (7%)

Query: 164  SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS----------ILAGYVNADNV 213
            S+V+  N++I   A  GD   A + F     L L+   S           L   V+    
Sbjct: 1978 SNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMS 2037

Query: 214  EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
             +  F++    E ++  S+++I ++ + G + +A  LF E+P +++VSW+++I+ Y QNE
Sbjct: 2038 HQQAFVFGF--ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 2095

Query: 274  MYEEALVLFMNMID--------HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
              + AL+LF + ++        + V +D VV+VSVLSAC+ ++       VH   VK G 
Sbjct: 2096 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 2155

Query: 326  ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
            +                G I     L DA               Y KCG    ++ +FD 
Sbjct: 2156 D----------------GSIGVGNTLMDA---------------YAKCGQPLVSKKVFDW 2184

Query: 386  MIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQ 444
            M EKD +SW++MI+ YAQ     E L +F  M +H G+R +  TL +V+ AC H  AL  
Sbjct: 2185 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244

Query: 445  GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            GK IH  + K  L+ N  +GT++IDMY K G V+ A + F   +EK V SW A++ G+ M
Sbjct: 2245 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 2304

Query: 505  NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            +G A ++L++F +M ++GV PN ITFV VL AC H GLV+EG   FN+M  ++ +EP  +
Sbjct: 2305 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 2364

Query: 565  HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
            HYGCMVDL GRAG L EA  LI+ M M PD   WG+LLGAC+ H + ++GE   +KL EL
Sbjct: 2365 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 2424

Query: 625  QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
             PD+ G++VLLSN++A  GRW DV  +R +M  R +VK PG S++E  G +H FL GD+ 
Sbjct: 2425 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKE 2484

Query: 685  HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
            HP    I   L+++  +L+  GY P+   V  D+D+EEKE  L  HSEKLA+AFG++  +
Sbjct: 2485 HPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSA 2544

Query: 745  PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P   I I+KNLR+C DCHT  K IS+   R+ VVRD  RFHHFK G CSC D+W
Sbjct: 2545 PGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 210/370 (56%), Gaps = 3/370 (0%)

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           + +  +I L+   G +A A  LF ++      +W+ +I     N + E+AL+L+ NM+  
Sbjct: 60  LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            +  D+     V+ AC N   +  G  VH   +K G    + +QN LI  Y  CG    A
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            K+F+     +++SW ++ISG + CG +++AR +FD +  K+VVSW+ MI+GY ++ Q  
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E L LF  MQ   I P+E T+VS+I ACT +  L  G+ IH Y  KN ++I   LGT LI
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALI 299

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K G + +A+EVF     K + +WN++I    ++GL  ++L +FSEM++  V P+ I
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA---EEL 585
           TF+GVL AC H+  V EG  +F  M Q + + P  +HY CM +L  R+  L EA    + 
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKE 419

Query: 586 IESMPMSPDV 595
           + S+  SP +
Sbjct: 420 VGSLANSPSI 429



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 125/410 (30%), Positives = 207/410 (50%), Gaps = 67/410 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFLESPN 95
           LQ C++FK   QI +++I +GL  D     +LI  +ST       ++Y+  +F  +++P 
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHG----RIAYAILLFYQIQNPC 89

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            F +N ++RA     + +QA+ LYK M+   +  D +T+P + +A    LS+  GK++H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            ++K GF  DV+V N LI+ Y  CG    A K+F++  V ++VSW ++++G ++      
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC----- 204

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                                     G++ EA R+F E+P K++VSW+A+I+ Y +N+  
Sbjct: 205 --------------------------GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQP 238

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEAL LF  M    +  +E  +VS++ AC  + ++  G  +H  A+K  IE  + L  AL
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I MYS CG I  A ++F+      L +WNSMI+                          S
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT--------------------------S 332

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
             + G  Q     E L+LF EM+   ++PD  T + V+ AC H+  + +G
Sbjct: 333 LGVHGLGQ-----EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/555 (23%), Positives = 238/555 (42%), Gaps = 130/555 (23%)

Query: 133  TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
            ++P   ++ +    +  G++ H      GF++D++V++ LI+MY+ CG L  AR LFDE 
Sbjct: 2017 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 2076

Query: 193  PVLDLVSWNSILAGYVNADNVEEAKFIY-------------NKMPERNII---------- 229
            P+ ++VSW S++ GYV  +  + A  ++             N +P  +++          
Sbjct: 2077 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 2136

Query: 230  ------------------------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                      N+++  + + G    + ++F  M +KD +SW+++
Sbjct: 2137 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 2196

Query: 266  ISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
            I+ Y Q+ +  EAL +F  M+ H  V  + V + +VL ACA+   ++AG  +H   +K+ 
Sbjct: 2197 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD 2256

Query: 325  IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +E  + +  ++I MY  CG +  A+K FD     ++ SW +M++G               
Sbjct: 2257 LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG--------------- 2301

Query: 385  AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                            Y  H +  E L +F +M   G++P+  T VSV++AC+H   +++
Sbjct: 2302 ----------------YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEE 2345

Query: 445  G-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  W +A   K  ++        ++D++ + GC++                         
Sbjct: 2346 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLN------------------------- 2380

Query: 504  MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-N 562
                     E ++ +K+  + P+ + +  +LGACR    VD G      + +   L+P N
Sbjct: 2381 ---------EAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE---LDPDN 2428

Query: 563  SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG-----------ALLGACKKHGDH 611
              +Y  + +L   AG   + E +   M     V   G             L   K+H  H
Sbjct: 2429 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHH 2488

Query: 612  EMGERVGRKL-VELQ 625
            EM  +   KL +ELQ
Sbjct: 2489 EMIYKYLEKLTLELQ 2503



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 200/419 (47%), Gaps = 33/419 (7%)

Query: 229  IASNSMI--VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            I  NS++  V  GR+ +   A   +K + K ++ SW+++I+   +     EAL  F ++ 
Sbjct: 1948 ITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR 2007

Query: 287  DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
               ++         + +C+ L  + +G   H  A   G E  + + +ALI MYS CG++ 
Sbjct: 2008 KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLK 2067

Query: 347  TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
             A  LFD     +++SW SMI+GY++    + A  LF   +E++                
Sbjct: 2068 DARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET--------------- 2112

Query: 407  FSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                     E++     P D   +VSV+SAC+ +      + +H ++ K G   +  +G 
Sbjct: 2113 ---------EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGN 2163

Query: 466  TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVT 524
            TL+D Y K G    + +VF   EEK   SWN++I  +A +GL+ ++LE+F  M +  GV 
Sbjct: 2164 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 2223

Query: 525  PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
             N +T   VL AC H G +  G +  +  + +  LE N      ++D+  + G ++ A++
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAG-KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 585  LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGF-HVLLSNIHA 640
              + M    +V +W A++     HG  +    +  K+V   ++P++  F  VL +  HA
Sbjct: 2283 TFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 2340



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 215/502 (42%), Gaps = 83/502 (16%)

Query: 52   QMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
            Q  + G   D F +S LI   +      ++  +  +F  +   N   + +M+  Y+Q   
Sbjct: 2040 QAFVFGFETDLFVSSALIDMYSKCG---QLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 2096

Query: 112  PQQAICLYKLMLN--------NNVGVDNYTYPLLAQASALRLS---VFEGKLIHDHVLKA 160
               A+ L+K  L         NNV +D+     +  A + R+S   + EG  +H  V+K 
Sbjct: 2097 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS-RVSGKGITEG--VHGFVVKK 2153

Query: 161  GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
            GFD  + V NTL++ YA CG    ++K+FD     D +SWNS++A Y  +    EA  ++
Sbjct: 2154 GFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVF 2213

Query: 221  NKMP----------------------------------------ERNIIASNSMIVLFGR 240
            + M                                         E N+    S+I ++ +
Sbjct: 2214 HGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK 2273

Query: 241  KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
             G V  A + F  M +K++ SW+A+++ Y  +   +EAL +F  M+   V  + +  VSV
Sbjct: 2274 CGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 2333

Query: 301  LSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNL 358
            L+AC++  +V+ G    +A+  K  IE  I     ++ ++   G +  A  L        
Sbjct: 2334 LAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKP 2393

Query: 359  DLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMISG-YAQHDQFSETLSL 413
            D + W S++       +V+     A+ LF+  ++ D   +  ++S  YA   ++++   +
Sbjct: 2394 DFVVWGSLLGACRIHKNVDLGEIAAQKLFE--LDPDNCGYYVLLSNLYADAGRWADVERM 2451

Query: 414  FMEMQHHG-IRPDEATLVSVISACTHLVALDQG----KWIHAYIRKNGLKINSILGTTLI 468
             M M++   ++P   +LV +       +  D+     + I+ Y+ K  L++         
Sbjct: 2452 RMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQ-------- 2503

Query: 469  DMYMKLGCVDNALEVFHGTEEK 490
                K+G V N   V H  +E+
Sbjct: 2504 ----KIGYVPNMTSVLHDVDEE 2521



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 358  LDLISWNSMISGYLKCGSVEK---ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
             D I++NS++ G +  G  +    A   +  + + +V SW+++I+  A+     E L  F
Sbjct: 1945 FDGITYNSILFG-VPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF 2003

Query: 415  MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
              ++  G+ P  ++    I +C+ L  L  G+  H      G + +  + + LIDMY K 
Sbjct: 2004 SSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC 2063

Query: 475  GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF-------SEMKKSGVTP-N 526
            G + +A  +F     + V SW ++I G+  N  AD +L +F       +E++     P +
Sbjct: 2064 GQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLD 2123

Query: 527  EITFVGVLGAC 537
             +  V VL AC
Sbjct: 2124 SVVMVSVLSAC 2134


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 379/659 (57%), Gaps = 74/659 (11%)

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER---------- 226
           + A K+FD+ P  +LV+W  ++  +       +A  ++  M      P+R          
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 227 -----------------------NIIASNSMIVLFGR---KGNVAEACRLFKEMPKKDLV 260
                                  ++    S++ ++ +    G+V ++ ++F++MP+ +++
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 261 SWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           SW+A+I+ Y Q+ E  +EA+ LF  MI   +  +     SVL AC NL+    G  V++ 
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
           AVK+GI                               +++ +  NS+IS Y + G +E A
Sbjct: 187 AVKLGIA------------------------------SVNCVG-NSLISMYARSGRMEDA 215

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R  FD + EK++VS++ ++ GYA++ +  E   LF E+   GI     T  S++S    +
Sbjct: 216 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 275

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            A+ +G+ IH  + K G K N  +   LI MY + G ++ A +VF+  E++ V SW ++I
Sbjct: 276 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMI 335

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            GFA +G A ++LEMF +M ++G  PNEIT+V VL AC H+G++ EG +HFNSM +EH +
Sbjct: 336 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 395

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
            P  +HY CMVDLLGR+G+L EA E I SMP+  D   W  LLGAC+ HG+ E+G     
Sbjct: 396 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 455

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
            ++E +PD    ++LLSN+HAS G+W DV+++R  M  R ++K  GCS IE    +H F 
Sbjct: 456 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 515

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
            G+ +HPQ  +I   LD++A K+K  GY PDT  V  DI++E+KE  LF+HSEK+A+AFG
Sbjct: 516 VGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFG 575

Query: 740 LITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LI+ S   PIRI KNLR+C DCHTA K+IS A  REIVVRD +RFHH K+G CSC D+W
Sbjct: 576 LISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 188/378 (49%), Gaps = 45/378 (11%)

Query: 241 KGNV--AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           KG+V  A A ++F +MP+++LV+W+ +I+ + Q     +A+ LF++M     + D     
Sbjct: 1   KGSVIWAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 60

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC---GEITTAEKLFDAG 355
           SVLSAC  L ++  G  +H+  +++G+   + +  +L+ MY+ C   G +  + K+F+  
Sbjct: 61  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 120

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              +++SW ++I+ Y + G  +K                              E + LF 
Sbjct: 121 PEHNVMSWTAIITAYAQSGECDK------------------------------EAIELFC 150

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M    IRP+  +  SV+ AC +L     G+ +++Y  K G+   + +G +LI MY + G
Sbjct: 151 KMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 210

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +++A + F    EK + S+NA++ G+A N  ++++  +F+E+  +G+  +  TF  +L 
Sbjct: 211 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC----MVDLLGRAGMLKEAEELIESMPM 591
               +G + +G +     I    L+   K   C    ++ +  R G ++ A ++   M  
Sbjct: 271 GAASIGAMGKGEQ-----IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME- 324

Query: 592 SPDVATWGALLGACKKHG 609
             +V +W +++    KHG
Sbjct: 325 DRNVISWTSMITGFAKHG 342



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 177/385 (45%), Gaps = 42/385 (10%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+ S++I  GL  D      L+           +  S K+F  +   N   +  ++ AY 
Sbjct: 77  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 136

Query: 108 QRN-VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           Q     ++AI L+  M++ ++  +++++  + +A       + G+ ++ + +K G  S  
Sbjct: 137 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN 196

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
            V N+LI+MYA  G +  ARK FD     +LVS+N+I+ GY      EEA  ++N++ + 
Sbjct: 197 CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 256

Query: 227 NIIAS---------------------------------------NSMIVLFGRKGNVAEA 247
            I  S                                       N++I ++ R GN+  A
Sbjct: 257 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 316

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            ++F EM  ++++SW+++I+ + ++     AL +F  M++     +E+  V+VLSAC+++
Sbjct: 317 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 376

Query: 308 TVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNS 365
            ++  G    +++  + GI   +     ++ +    G +  A +  ++   + D + W +
Sbjct: 377 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 436

Query: 366 MISGYLKCGSVEKARALFDAMIEKD 390
           ++      G+ E  R   + ++E++
Sbjct: 437 LLGACRVHGNTELGRHAAEMILEQE 461


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/541 (42%), Positives = 337/541 (62%), Gaps = 26/541 (4%)

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
            W+ +I+ Y +      AL ++  +      VD  +  SVL AC  ++  + G  +H   
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 185

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW----NSMISGYLKCGSV 376
           +K G++  + + NAL+ MY  C  +  A  +FD     D++SW     +++  Y KCG +
Sbjct: 186 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
             AR LF+ + +K VVSW+ MI+G  + ++  E   LF+ MQ   I P+E T+++     
Sbjct: 246 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN----- 300

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
                            K  ++++ IL T L+DMY K G ++ A  +F     + +  WN
Sbjct: 301 -----------------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWN 343

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I GFAM+G  +++L++F+EM++ GV PN+ITF+G+L AC H GLV EG + F  M+  
Sbjct: 344 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 403

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
             L P  +HYGCMVDLLGRAG+L EA E+I+SMP+ P+   WGAL+ AC+ H + ++GE 
Sbjct: 404 FGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGEL 463

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              +L+E++P++ G++VL+SNI+A+  RW D   VR  M   G+ K PG S+IE NG +H
Sbjct: 464 AATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 523

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           EFL GD++HPQI  I+ ML EM +KL   GY PDT  V  +ID+EEKET L  HSEKLA+
Sbjct: 524 EFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAM 583

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AFGLI+ +P  PIRI+KNLR+CNDCH A K +S+ + R I+VRDR+RFHHF+ G CSC D
Sbjct: 584 AFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGD 643

Query: 797 F 797
           +
Sbjct: 644 Y 644



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 186/427 (43%), Gaps = 71/427 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++ +Y +RN P+ A+ +Y  +   +  VDN+  P + +A         GK IH  VL
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 159 KAGFDSDVYVNN-----------------------------------TLINMYAVCGDLS 183
           K G D DV+V N                                    L++MYA CG L 
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--------------- 228
            AR+LF+      +VSW +++AG + ++ +EE   ++ +M E NI               
Sbjct: 247 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVEV 306

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
             I + +++ ++ + G++  A RLF E   +D+  W+A+I+ +  +   EEAL +F  M 
Sbjct: 307 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 366

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-----VHALAVKIGIECYINLQNALIHMYSS 341
              V  +++  + +L AC++  +V  G       VH   +   IE Y      ++ +   
Sbjct: 367 RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY----GCMVDLLGR 422

Query: 342 CGEITTAEKLFDAGH-NLDLISWNSMISG--YLKCGSVEKARALFDAMIEKDVVSWSTMI 398
            G +  A ++  +     + I W ++++     K   + +  A     IE +   ++ ++
Sbjct: 423 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLM 482

Query: 399 SG-YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           S  YA  +++S+   +   M+  G++ +    V  ++   H   +  G   H  IR    
Sbjct: 483 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLM--GDQSHPQIR---- 536

Query: 458 KINSILG 464
           +IN +L 
Sbjct: 537 RINEMLA 543


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 368/624 (58%), Gaps = 47/624 (7%)

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY----NKMPERNIIASNSM 234
           CG L   R L+           N++L        ++E K ++    N   + +++  NS+
Sbjct: 67  CGSLEPDRTLY-----------NTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSL 115

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++ R G++  A RLF EMP +D+VSW+++I+ Y QN+   +AL+LF  M+      +E
Sbjct: 116 LFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNE 175

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             + S++  C  +     G  +HA   K G    + + ++L+ MY+              
Sbjct: 176 FTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYA-------------- 221

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            +CG + +A  +FD +  K+ VSW+ +I+GYA+  +  E L+LF
Sbjct: 222 -----------------RCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALF 264

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
           + MQ  G RP E T  +++S+C+ +  L+QGKW+HA++ K+  K+   +G TL+ MY K 
Sbjct: 265 VRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKS 324

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A +VF    +  V S N+++IG+A +GL  ++ + F EM + G+ PN+ITF+ VL
Sbjct: 325 GSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVL 384

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H  L+DEG +H+  +++++ +EP   HY  +VDLLGRAG+L +A+  IE MP+ P 
Sbjct: 385 TACSHARLLDEG-KHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPT 443

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
           VA WGALLGA K H + EMG    +++ EL P + G H LL+NI+AS GRW+DV +VR +
Sbjct: 444 VAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKI 503

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M   GV K P CS +E    +H F+A D  HPQ  +I  M +++ +K+K  GY PDT  V
Sbjct: 504 MKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHV 563

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
              +DQ+EKE  L  HSEKLA++F L+   P + IRIMKN+R+C DCH+A K++S    R
Sbjct: 564 LLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKR 623

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFHHF  G CSC D+W
Sbjct: 624 EIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 182/391 (46%), Gaps = 71/391 (18%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EGKL+H HVL + F  D+ + N+L+ MYA CG L  AR+LFDE P  D+VSW S++ GY 
Sbjct: 92  EGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYA 151

Query: 209 NADNVEEAKFIYNKM------PER---------------------------------NII 229
             D   +A  ++ +M      P                                   N+ 
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVF 211

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             +S++ ++ R G + EA  +F ++  K+ VSW+ALI+ Y +    EEAL LF+ M    
Sbjct: 212 VGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREG 271

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
               E    ++LS+C+++  ++ G  +HA  +K   +    + N L+HMY+  G I  AE
Sbjct: 272 YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAE 331

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           K+FD    +D++S NSM+ GY                               AQH    E
Sbjct: 332 KVFDKLVKVDVVSCNSMLIGY-------------------------------AQHGLGKE 360

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
               F EM   GI P++ T +SV++AC+H   LD+GK     +RK  ++       T++D
Sbjct: 361 AAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVD 420

Query: 470 MYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +  + G +D A         E  V+ W AL+
Sbjct: 421 LLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 39/294 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +M+  Y Q +    A+ L+  ML++    + +T   L +      S   G+ IH    
Sbjct: 143 WTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCW 202

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G  S+V+V ++L++MYA CG L  A  +FD+    + VSWN+++AGY      EEA  
Sbjct: 203 KYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALA 262

Query: 219 IYNKMPERNI---------------------------------------IASNSMIVLFG 239
           ++ +M                                               N+++ ++ 
Sbjct: 263 LFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYA 322

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A ++F ++ K D+VS ++++  Y Q+ + +EA   F  MI   +  +++  +S
Sbjct: 323 KSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLS 382

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           VL+AC++  ++  G     L  K  IE  ++    ++ +    G +  A+   +
Sbjct: 383 VLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIE 436



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 40/220 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  L   N   +N ++  Y ++   ++A+ L+  M         +TY  L  + +    
Sbjct: 232 VFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGC 291

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H H++K+      YV NTL++MYA  G +  A K+FD+   +D+VS NS+L G
Sbjct: 292 LEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIG 351

Query: 207 YV-----------------------------------NADNVEEAKFIYNKMPERNI--- 228
           Y                                    +A  ++E K  +  M + NI   
Sbjct: 352 YAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPK 411

Query: 229 IASNSMIV-LFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
           ++  + IV L GR G + +A    +EMP +  V+ W AL+
Sbjct: 412 VSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/784 (33%), Positives = 423/784 (53%), Gaps = 73/784 (9%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           ++TG  +D F A+ L+          +   S ++F  +   N   +N +   Y+Q  +  
Sbjct: 109 VVTGFESDGFVANTLVVMYAKCGLLDD---SRRLFGGIVERNVVSWNALFSCYVQSELCG 165

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +A+ L+K M+ + +  + ++  ++  A A       G+ IH  +LK G D D +  N L+
Sbjct: 166 EAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALV 225

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---------- 223
           +MY+  G++  A  +F +    D+VSWN+I+AG V  D  + A  + ++M          
Sbjct: 226 DMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMF 285

Query: 224 -----------------------------PERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                           ++ A+  ++ ++ +   + +A R +  M
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           PKKD+++W+ALIS Y Q   + +A+ LF  M    +  ++  + +VL + A+L  +K   
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +H +++K GI             YS                  D    NS++  Y KC 
Sbjct: 406 QIHTISIKSGI-------------YS------------------DFYVINSLLDTYGKCN 434

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            +++A  +F+    +D+V++++MI+ Y+Q+    E L L+++MQ   I+PD     S+++
Sbjct: 435 HIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLN 494

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC +L A +QGK +H +  K G   +     +L++MY K G +++A   F     +G+ S
Sbjct: 495 ACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVS 554

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W+A+I G+A +G   ++L +F++M + GV PN IT V VL AC H GLV+EG ++F  M 
Sbjct: 555 WSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKME 614

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
               ++P  +HY CM+DLLGR+G L EA EL+ S+P   D   WGALLGA + H + E+G
Sbjct: 615 VMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELG 674

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           ++  + L +L+P+  G HVLL+NI+AS G W++V +VR  M    V K PG S IE    
Sbjct: 675 QKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDK 734

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           ++ F+ GDR+H + +EI   LD++   L   GY+        ++D+ EKE  L+ HSEKL
Sbjct: 735 VYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKL 794

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AFGLI   P  PIR+ KNLRIC DCHT  KF+ +   REI+VRD +RFHHFK GSCSC
Sbjct: 795 AVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSC 854

Query: 795 MDFW 798
            D+W
Sbjct: 855 GDYW 858



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 242/522 (46%), Gaps = 86/522 (16%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H H++K GF  D  + N L+ +Y+ C     ARKL DES  LD+VSW+S+L+GYV    
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
           VEEA  ++N+M                                        E +   +N+
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++V++ + G + ++ RLF  + ++++VSW+AL SCY Q+E+  EA+ LF  M+   +M +
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E  +  +L+ACA L     G  +H L +K+G++      NAL+ MYS  GEI  A  +F 
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              + D++SWN++I+G +                                HD     L L
Sbjct: 243 DIAHPDVVSWNAIIAGCV-------------------------------LHDCNDLALML 271

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
             EM+  G RP+  TL S + AC  +   + G+ +H+ + K     +      L+DMY K
Sbjct: 272 LDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSK 331

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
              +D+A   +    +K + +WNALI G++  G    ++ +FS+M    +  N+ T   V
Sbjct: 332 CEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTV 391

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG------CMVDLLGRAGMLKEAEELIE 587
           L +   +       +      Q H +   S  Y        ++D  G+   + EA ++ E
Sbjct: 392 LKSVASL-------QAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE 444

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
                 D+  + +++ A  ++GD E   ++  ++   +++PD
Sbjct: 445 ERTWE-DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPD 485



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/580 (21%), Positives = 269/580 (46%), Gaps = 92/580 (15%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +++++  Y+Q    ++A+ ++  M    V  + +T+P + +A +++  +  G+ +H   +
Sbjct: 50  WSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAV 109

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
             GF+SD +V NTL+ MYA CG L  +R+LF      ++VSWN++ + YV ++   EA  
Sbjct: 110 VTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVG 169

Query: 219 IYNKMPERNII---------------------------------------ASNSMIVLFG 239
           ++ +M    I+                                       ++N+++ ++ 
Sbjct: 170 LFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYS 229

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G +  A  +F+++   D+VSW+A+I+    ++  + AL+L   M       +   + S
Sbjct: 230 KAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSS 289

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
            L ACA +   + G  +H+  +K+     +     L+ MYS C  +  A + +D+    D
Sbjct: 290 ALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKD 349

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +I+WN++ISGY +CG    A +LF  M  +D+               F++T         
Sbjct: 350 IIAWNALISGYSQCGDHLDAVSLFSKMFSEDI--------------DFNQT--------- 386

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
                   TL +V+ +   L A+   K IH    K+G+  +  +  +L+D Y K   +D 
Sbjct: 387 --------TLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDE 438

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A ++F     + + ++ ++I  ++  G  +++L+++ +M+ + + P+      +L AC +
Sbjct: 439 ASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL---------GRAGMLKEAEELIESMP 590
           +   ++G           +L  ++  +G M D+           + G +++A+     +P
Sbjct: 499 LSAYEQG----------KQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP 548

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
            +  + +W A++G   +HG  +   R+  +++   + P+H
Sbjct: 549 -NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 46/280 (16%)

Query: 29  NLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
            LS +   +   Q+ K   QI +  I +G+ +D +  + L+          E S   KIF
Sbjct: 387 TLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS---KIF 443

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
                 +   + +M+ AY Q    ++A+ LY  M + ++  D +    L  A A  LS +
Sbjct: 444 EERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA-NLSAY 502

Query: 149 E-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           E GK +H H +K GF  D++ +N+L+NMYA CG +  A + F E P   +VSW++++ GY
Sbjct: 503 EQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGY 562

Query: 208 VNADNVEEAKFIYNKM-----PERNII------ASN------------------------ 232
               + +EA  ++N+M     P  +I       A N                        
Sbjct: 563 AQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPT 622

Query: 233 -----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI 266
                 MI L GR G + EA  L   +P + D   W AL+
Sbjct: 623 QEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALL 662



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 51/298 (17%)

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           +HA++ K G   +  L   L+ +Y K      A ++   + E  V SW++L+ G+  NG 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACR----------------------------- 538
            +++L +F+EM   GV  NE TF  VL AC                              
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 539 ------HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV--DLLGRA-GMLKEAEELIESM 589
                   GL+D+  R F  +++ + +  N+  + C V  +L G A G+ K   E++ S 
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNAL-FSCYVQSELCGEAVGLFK---EMVRSG 178

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV-LLSNIHASKGRWDDV 648
            M P+  +   +L AC    + ++G ++   ++++  D D F    L ++++  G  +  
Sbjct: 179 IM-PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 649 LEVRGMMVRRGVVK----IPGCSMIEANGI---IHEFLAGDRTHPQINEIDNMLDEMA 699
           + V   +    VV     I GC + + N +   + + + G  T P +  + + L   A
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 274/812 (33%), Positives = 419/812 (51%), Gaps = 74/812 (9%)

Query: 26   PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
            P I  S+L     K + +K   Q+   ++  G   +T+  + L+   + L  FI      
Sbjct: 271  PYIFSSVLSA-CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAE--- 326

Query: 86   KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            ++F  +   +   +N+++    Q+    +A+ L+K M  + +  D  T   L  A +   
Sbjct: 327  QVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVG 386

Query: 146  SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            ++  GK  H + +KAG  SD+ +   L+++Y  C D+  A + F  +   ++V WN +L 
Sbjct: 387  ALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLV 446

Query: 206  GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
             Y   DN+ E+  I+ +M                                        + 
Sbjct: 447  AYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF 506

Query: 227  NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            N+  S+ +I ++ + G +  A ++F+ + +KD+VSW+A+I+ Y Q+E + EAL LF  M 
Sbjct: 507  NVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQ 566

Query: 287  DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            D  +  D +   S +SACA +  +  G  +HA A                          
Sbjct: 567  DQGIHSDNIGFASAISACAGIQALNQGQQIHAQACV------------------------ 602

Query: 347  TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                   +G++ DL   N+++S Y +CG V  A   FD +  KD +SW+++ISG+AQ   
Sbjct: 603  -------SGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGH 655

Query: 407  FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
              E LSLF +M   G   +  T    +SA  ++  +  GK IHA I K G    + +   
Sbjct: 656  CEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNV 715

Query: 467  LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            LI +Y K G +D+A   F    EK   SWNA++ G++ +G   K+L +F +MK+ GV PN
Sbjct: 716  LITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPN 775

Query: 527  EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             +TFVGVL AC H+GLVDEG ++F SM + H L P  +HY C+VDLLGR+G+L  A   +
Sbjct: 776  HVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFV 835

Query: 587  ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            E MP+ PD      LL AC  H + ++GE     L+EL+P     +VLLSN++A  G+W 
Sbjct: 836  EEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWG 895

Query: 647  DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
                 R MM  RGV K PG S IE N  +H F AGD+ HP +++I   L ++ +     G
Sbjct: 896  CRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENG 955

Query: 707  YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
            Y P T  +  D ++ +K  T   HSEKLAIAFGL+++S   PI + KNLR+C DCH   K
Sbjct: 956  YIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIK 1015

Query: 767  FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ++S+  DR IVVRD +RFHHFK G CSC D+W
Sbjct: 1016 YVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  213 bits (541), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/555 (26%), Positives = 262/555 (47%), Gaps = 75/555 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLSVFEGKLIHDHV 157
           +N ++  ++   +  + + L++ ML   V  D  TY  +L       +     + IH   
Sbjct: 137 WNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHART 196

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           +  G+++ ++V N LI++Y   G L++A+K+FD     D VSW ++L+G   +   EEA 
Sbjct: 197 ITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAV 256

Query: 218 FIYNKM------PERNIIAS---------------------------------NSMIVLF 238
            ++ +M      P   I +S                                 N+++ L+
Sbjct: 257 LLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLY 316

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R GN   A ++F  M ++D VS+++LIS   Q    ++AL LF  M    +  D V V 
Sbjct: 317 SRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVA 376

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           S+LSAC+++  +  G   H+ A+K G+   I L+ AL+ +Y  C +I TA + F +    
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           +++ WN                                M+  Y   D  +E+  +F +MQ
Sbjct: 437 NVVLWN-------------------------------VMLVAYGLLDNLNESFKIFTQMQ 465

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             GI P++ T  S++  C+ L A+D G+ IH  + K G + N  + + LIDMY KLG +D
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLD 525

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           +AL++F   +EK V SW A+I G+A +    ++L +F EM+  G+  + I F   + AC 
Sbjct: 526 HALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 539 HMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            +  +++G + H  + +  +  + +  +   +V L  R G +++A    + +  S D  +
Sbjct: 586 GIQALNQGQQIHAQACVSGYSDDLSVGN--ALVSLYARCGKVRDAYFAFDKI-FSKDNIS 642

Query: 598 WGALLGACKKHGDHE 612
           W +L+    + G  E
Sbjct: 643 WNSLISGFAQSGHCE 657



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 147/572 (25%), Positives = 249/572 (43%), Gaps = 80/572 (13%)

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
           P + + + F+   FLE      +     AY         I    LM    V  ++ TY  
Sbjct: 21  PVVSIFFFFQ--KFLEHNTALSY-----AYSNDEGEANGINFLHLMEERGVRANSQTYLW 73

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           L           +G  +H  +LK GF ++V +   L+++Y   GDL  A  +FDE PV  
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKM--------------------------------- 223
           L  WN +L  +V          ++ +M                                 
Sbjct: 134 LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIH 193

Query: 224 -------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                   E ++   N +I L+ + G +  A ++F  + K+D VSW A++S   Q+   E
Sbjct: 194 ARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEE 253

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA++LF  M    V     +  SVLSAC  +   K G  +H L +K G      + NAL+
Sbjct: 254 EAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALV 313

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +YS  G    AE++F+A    D +S+NS+ISG  + G  +KA                 
Sbjct: 314 TLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA----------------- 356

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
                         L LF +M    ++PD  T+ S++SAC+ + AL  GK  H+Y  K G
Sbjct: 357 --------------LELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAG 402

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +  + IL   L+D+Y+K   +  A E F  TE + V  WN +++ + +    ++S ++F+
Sbjct: 403 MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFT 462

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M+  G+ PN+ T+  +L  C  +  VD G +  ++ + +   + N      ++D+  + 
Sbjct: 463 QMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKL 521

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           G L  A ++   +    DV +W A++    +H
Sbjct: 522 GKLDHALKIFRRLK-EKDVVSWTAMIAGYAQH 552



 Score =  196 bits (498), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 250/563 (44%), Gaps = 72/563 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L+  +   +  M+    Q    ++A+ L+  M  + V    Y +  +  A     
Sbjct: 226 KVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVE 285

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G+ +H  VLK GF  + YV N L+ +Y+  G+   A ++F+     D VS+NS+++
Sbjct: 286 FYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLIS 345

Query: 206 GYVNADNVEEAKFIYNKM------PE---------------------------------R 226
           G       ++A  ++ KM      P+                                  
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSS 405

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +II   +++ L+ +  ++  A   F     +++V W+ ++  Y   +   E+  +F  M 
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQ 465

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  ++    S+L  C++L  V  G  +H   +K G +  + + + LI MY+      
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA------ 519

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    K G ++ A  +F  + EKDVVSW+ MI+GYAQH++
Sbjct: 520 -------------------------KLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEK 554

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           F+E L+LF EMQ  GI  D     S ISAC  + AL+QG+ IHA    +G   +  +G  
Sbjct: 555 FAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNA 614

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ +Y + G V +A   F     K   SWN+LI GFA +G  +++L +FS+M K+G   N
Sbjct: 615 LVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEIN 674

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF G   +        +  +  ++MI +   +  ++    ++ L  + G + +AE   
Sbjct: 675 SFTF-GPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQF 733

Query: 587 ESMPMSPDVATWGALLGACKKHG 609
             MP   ++ +W A+L    +HG
Sbjct: 734 FEMPEKNEI-SWNAMLTGYSQHG 755



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 159/372 (42%), Gaps = 44/372 (11%)

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           +AL   Y  +E  E   + F+++++ R V  +    + +L  C +      G  +H   +
Sbjct: 37  TALSYAYSNDEG-EANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K+G                 C E+   E+L D                Y+  G ++ A  
Sbjct: 96  KMGF----------------CAEVVLCERLMDL---------------YIAFGDLDGAVT 124

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-V 440
           +FD M  + +  W+ ++  +         L LF  M    ++PDE T   V+  C    V
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
                + IHA    +G + +  +   LID+Y K G +++A +VF G +++   SW A++ 
Sbjct: 185 PFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRL 559
           G + +G  ++++ +F +M  SGV P    F  VL AC  +     G + H   + Q   L
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL 304

Query: 560 EPNSKHYGC--MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
           E     Y C  +V L  R G    AE++  +M +  D  ++ +L+    + G  +    +
Sbjct: 305 ET----YVCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLISGLSQQGYSDKALEL 359

Query: 618 GRKLVE--LQPD 627
            +K+    L+PD
Sbjct: 360 FKKMCLDCLKPD 371


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/587 (41%), Positives = 351/587 (59%), Gaps = 40/587 (6%)

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
           N+ +  F+ +K+ E + +  +         G+VA A R+F      +L  W+ +I  Y  
Sbjct: 34  NLTQDTFLTSKLIESSAVTLS---------GHVAYAHRIFSCTHHPNLFMWNTIIRGYSI 84

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           ++    A+ L+ +M    +  +      VL AC  L  +  G  +H+  VK+G++    L
Sbjct: 85  SDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPL 144

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            N LI +Y++C                               G ++ A  +FD M E D 
Sbjct: 145 VNGLIKLYAAC-------------------------------GCMDYACVMFDEMPEPDS 173

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
            SWSTM+SGYAQ+ Q  E L LF EMQ   +  D  TL SV+  C  L ALD GKW+H+Y
Sbjct: 174 ASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSY 233

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + K G+KI+ +LGT L+ MY K G +DNAL+VF G  E+ V++W+ +I G+A++G  +K+
Sbjct: 234 MDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKA 293

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L++F  MK+S   PN +TF  VL AC H GLV++GH+ F +M  E+++ P  KHYGCMVD
Sbjct: 294 LQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVD 353

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           L  RAGM+  A + I++MP+ P+V  W  LLGACK HG  ++GE + RK+++L P     
Sbjct: 354 LFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPEN 413

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VL+SN++AS GRW  V +VR +M  +   K  G S IE N ++H+F+ GD +HP+  +I
Sbjct: 414 YVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKI 473

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
             ML +MA+KLK  G+   T++V  DID+EEKE  L  HSE+LAIA+GL+     +PIRI
Sbjct: 474 YGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRI 533

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +KNLR+C DCH   K IS  ++REI+VRDR RFHHF+   CSC D+W
Sbjct: 534 VKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 184/420 (43%), Gaps = 71/420 (16%)

Query: 25  KPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYS 84
           KP ++   L   +++C        I + M+   L  DTF  S+LI+ S   L    ++Y+
Sbjct: 2   KPMLDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSG-HVAYA 60

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            +IF+    PN F++NT++R Y   + P  AI LY+ M    +  ++YT+  + +A    
Sbjct: 61  HRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKL 120

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           L + EG+ +H  ++K G D +  + N LI +YA CG +  A  +FDE P  D  SW++++
Sbjct: 121 LRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 205 AGYVNADNVEEAKFIYNKMPERN------------------------------------- 227
           +GY       EA  ++ +M   N                                     
Sbjct: 181 SGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK 240

Query: 228 --IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
             ++   +++ ++ + G++  A ++F+ M ++D+ +WS +I+ Y  +   E+AL LF  M
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAM 300

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
              + + + V   SVLSAC++  +V+ G   H +   +  E  I  Q             
Sbjct: 301 KRSKTIPNCVTFTSVLSACSHSGLVEKG---HQIFETMWTEYKITPQ------------- 344

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQH 404
                         +  +  M+  + + G V  A      M IE +VV W T++     H
Sbjct: 345 --------------IKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTH 390


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 275/838 (32%), Positives = 450/838 (53%), Gaps = 89/838 (10%)

Query: 4   ATKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIA 60
           A KL H+S             K  I+   L + LQ C   +S K   ++ + +   G + 
Sbjct: 80  AVKLLHVSG------------KWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVL 127

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           D+   S+L    T+     E S   ++F  ++      +N +M    +      +I L+K
Sbjct: 128 DSNLGSKLALMYTNCGDLKEAS---RVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFK 184

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            M+++ V +D+YT+  ++++ +   SV  G+ +H ++LK+GF     V N+L+  Y    
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNH 244

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----------------- 223
            + +ARK+FDE    D++SWNSI+ GYV+    E+   ++ +M                 
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFA 304

Query: 224 --PERNIIA--------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
              +  +I+                     N+++ ++ + G++  A  +F+EM  + +VS
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           ++++I+ Y +  +  EA+ LF  M +  +  D   V +VL+ CA   ++  G  VH    
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           +  +   I + NAL+ MY+                               KCGS+ +A  
Sbjct: 425 ENDMGFDIFVSNALMDMYA-------------------------------KCGSMREAEL 453

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF-MEMQHHGIRPDEATLVSVISACTHLV 440
           +F  M  KD++SW+T+I GY+++   +E LSLF + +      PDE T+  V+ AC  L 
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLS 513

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           A D+G+ IH YI +NG   +  +  +L+DMY K G +  A  +F     K + SW  +I 
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIA 573

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+ M+G   +++ +F++M+++G+ P+EI+FV +L AC H GLVDEG R FN M  E ++E
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P  +HY C+VD+L R G L +A   IE+MP+ PD   WGALL  C+ H D ++ ERV  K
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEK 693

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           + EL+P++ G++VL++NI+A   +W++V  +R  + +RG+ K PGCS IE  G ++ F+A
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GD ++P+  +I+  L  +  ++  EGY+P T     D ++ EKE  L  HSEKLA+A G+
Sbjct: 754 GDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGI 813

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+      IR+ KNLR+C DCH  AKF+S+   REIV+RD +RFH FK G CSC  FW
Sbjct: 814 ISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 250/551 (45%), Gaps = 77/551 (13%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           NT +R + +    + A+ L  L ++    +D  T   + Q  A   S+ +GK + + +  
Sbjct: 65  NTQLRRFCESGNLKNAVKL--LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
            GF  D  + + L  MY  CGDL  A ++FD+  +   + WN ++     + +   +  +
Sbjct: 123 NGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 220 YNKM----------------------------------------PERNIIASNSMIVLFG 239
           + KM                                         ERN +  NS++  + 
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYL 241

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +   V  A ++F EM ++D++SW+++I+ Y  N + E+ L +F+ M+   + +D   +VS
Sbjct: 242 KNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS 301

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V + CA+  ++  G +VH   VK          N L+ MYS                   
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYS------------------- 342

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                       KCG ++ A+ +F  M  + VVS+++MI+GYA+     E + LF EM+ 
Sbjct: 343 ------------KCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI PD  T+ +V++ C     LD+GK +H +I++N +  +  +   L+DMY K G +  
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMRE 450

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS-EMKKSGVTPNEITFVGVLGACR 538
           A  VF     K + SWN +I G++ N  A+++L +F+  + +   +P+E T   VL AC 
Sbjct: 451 AELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            +   D+G R  +  I  +    +      +VD+  + G L  A  L + +  S D+ +W
Sbjct: 511 SLSAFDKG-REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT-SKDLVSW 568

Query: 599 GALLGACKKHG 609
             ++     HG
Sbjct: 569 TVMIAGYGMHG 579


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/658 (39%), Positives = 384/658 (58%), Gaps = 54/658 (8%)

Query: 162 FD-SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL----------VSWNSILAGYVNA 210
           FD +DVY  N+LI   A  GD   + + F     LD+          +   S L    + 
Sbjct: 42  FDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSG 101

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
               +   ++    E ++  S+++I ++ + G ++ A  LF E+P++++V+W++LI+ Y 
Sbjct: 102 KQAHQQALVFG--FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYV 159

Query: 271 QNEMYEEALVLFMNMIDHR---------VMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           QN+   EAL++F   +  +           VD V ++SVLSAC+ ++       VH +A+
Sbjct: 160 QNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAI 219

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K+G++  + ++N L+  Y+                               KCG V  +R 
Sbjct: 220 KVGLDKVMGVENTLLDAYA-------------------------------KCGEVSLSRK 248

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLV 440
           +FD M EKDVVSW++MI+ YAQ+   ++   +F  M +  G + +E TL +++ AC H  
Sbjct: 249 VFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEG 308

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL  G  +H  + K G   N I+ T++IDMY K G  + A   F G +EK V SW A+I 
Sbjct: 309 ALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIA 368

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+ M+G A ++L++F +M  +GV PN ITF+ VL AC H G ++EG R FN+M  E+ +E
Sbjct: 369 GYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVE 428

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P  +HYGCMVDLLGRAG +KEA  LI+SM +  D   WG+LL AC+ H D E+ E   R+
Sbjct: 429 PGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARE 488

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L +L P + G++VLL+NI+A  GRW DV  +R ++  RG+VK PG S++E  G +H FL 
Sbjct: 489 LFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLV 548

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GD+ HPQ  +I   L+E++ KL+  GY P+   V  D+D+EEKE  +  HSEKLA+AFG+
Sbjct: 549 GDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGV 608

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   P + I ++KNLR+C DCHT  K IS+   REI+VRD  RFHHFK G CSC D+W
Sbjct: 609 MNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 193/411 (46%), Gaps = 81/411 (19%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           + +  + + +N+++    +     +++  +  M   ++  +  T+P   ++ +    +  
Sbjct: 41  YFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNS 100

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK  H   L  GF+SD++V++ LI+MY+ CG LS AR LFDE P  ++V+W S++ GYV 
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQ 160

Query: 210 ADNVEEA-----KFIYNKMP---------------------------------------- 224
            D+  EA     +F++ K                                          
Sbjct: 161 NDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIK 220

Query: 225 ---ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
              ++ +   N+++  + + G V+ + ++F +M +KD+VSW+++I+ Y QN +  +A  +
Sbjct: 221 VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEV 280

Query: 282 FMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F  M+       +EV + ++L ACA+   ++ G  +H   +K+G    + +  ++I MY 
Sbjct: 281 FHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYC 340

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG+   A   FD     ++ SW +MI+GY                           + G
Sbjct: 341 KCGQAEMARNAFDGMKEKNVRSWTAMIAGY--------------------------GMHG 374

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHA 450
           +A+     E L +F +M   G++P+  T +SV++AC+H   L++G +W +A
Sbjct: 375 FAR-----EALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNA 420



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 180/423 (42%), Gaps = 75/423 (17%)

Query: 25  KPTINLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           KP  N S     ++ C +        Q   Q ++ G  +D F +S LI   +      ++
Sbjct: 79  KP--NRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG---KL 133

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-------NNNVGVDNYTY 134
           S +  +F  +   N   + +++  Y+Q +   +A+ ++K  L          VG    + 
Sbjct: 134 SNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSV 193

Query: 135 PLLAQASAL-RLS---VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
            +++  SA  R+S   V EG  +H   +K G D  + V NTL++ YA CG++S +RK+FD
Sbjct: 194 AMISVLSACSRVSNKAVSEG--VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFD 251

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE------------------------- 225
           +    D+VSWNS++A Y       +A  +++ M +                         
Sbjct: 252 DMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALR 311

Query: 226 ---------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                           N+I + S+I ++ + G    A   F  M +K++ SW+A+I+ Y 
Sbjct: 312 VGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYG 371

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-----TSVHALAVKIGI 325
            +    EAL +F  MI   V  + +  +SVL+AC++   ++ G        H   V+ G+
Sbjct: 372 MHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGV 431

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVE----KAR 380
           E Y      ++ +    G I  A  L  +     D + W S+++       VE     AR
Sbjct: 432 EHY----GCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISAR 487

Query: 381 ALF 383
            LF
Sbjct: 488 ELF 490


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/484 (46%), Positives = 319/484 (65%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           SVHA A + G     ++Q+  + MY++ G++      F    + D++   +M+      G
Sbjct: 145 SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGG 204

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            V+ AR LFD M ++D V+W+ M++GY +  +  E L LF EMQ  G+   E TLVSV++
Sbjct: 205 DVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLT 264

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  + AL++G W+H+Y+   G++++  LGT L+DMY K G V  ++EVF    E+ + +
Sbjct: 265 ACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYT 324

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W + + G AMNG+ ++ LE+F  M+ +G+ PN +TFV VL  C   GLV+EG   F+SM 
Sbjct: 325 WTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMK 384

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
            +H++EP  +HYGCMVDL GRAG L +A + I SMP+ P    WGALL A + H + ++G
Sbjct: 385 DKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLG 444

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           +    KL E++  +D  HVLLSNI+A    W  V +VR MM  +GV K+PGCS IE +G 
Sbjct: 445 KHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGK 504

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +HEF  G ++HP+  +I  ML EM+ +L+L+GYA +T EV FDI++EEKE  +  HSEKL
Sbjct: 505 VHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKL 564

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AFGLIT+     IRI+KNLR+C DCH   K IS+ FDREIV+RDR+RFHHFKHG+CSC
Sbjct: 565 ALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSC 624

Query: 795 MDFW 798
            D+W
Sbjct: 625 RDYW 628



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 177/419 (42%), Gaps = 88/419 (21%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ--------------ASALRL 145
           N ++RA  +   P  A   ++ +    +  D+Y++  L +               + + +
Sbjct: 83  NGLLRALARGPCPGLAFAAFREL---PLAPDHYSFTFLVRAATSLAAAASATPVPTDVAV 139

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE--SPVLDLVSWNSI 203
           ++  G  +H    + G  +D +V +  ++MYA  GD+ A R  F E  SP          
Sbjct: 140 NLLAGS-VHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSP---------- 188

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                                  +++   +M+      G+V  A  LF  MP++D V+W+
Sbjct: 189 -----------------------DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWN 225

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+++ Y +     EAL LF  M    V V EV +VSVL+ACA +  ++ G  VH+     
Sbjct: 226 AMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSR 285

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G+   + L  AL+ MYS CG +T + ++F+     ++ +W S +SG    G  E      
Sbjct: 286 GMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGE------ 339

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                                    E L LF  M+  G+ P+  T V+V+  C+    ++
Sbjct: 340 -------------------------ECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVE 374

Query: 444 QGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +G+     + K+  K+   L     ++D+Y + G +D+A++  +    E     W AL+
Sbjct: 375 EGRACFDSM-KDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALL 432


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/753 (35%), Positives = 402/753 (53%), Gaps = 75/753 (9%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++ +F  +E  N F +N ++  Y +  +  +A+ LY  ML   V  D YT+P + +    
Sbjct: 160 AWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGG 219

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++  G+ IH HV++ GF+SDV V N LI MY  CGD++ AR +FD+ P  D +SWN++
Sbjct: 220 MPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAM 279

Query: 204 LAGYVNADNVEEAKFIYNKM------PE-------------------------------- 225
           ++GY       E   ++  M      P+                                
Sbjct: 280 ISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEF 339

Query: 226 -RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            R+    NS+I ++   G + EA  +F     +DLVSW+A+IS YE   M ++AL  +  
Sbjct: 340 GRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKM 399

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    +M DE+ +  VLSAC+ L  +  G ++H +A + G+  Y  + N+LI MY+ C  
Sbjct: 400 MEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKC 459

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           I  A ++F +    +++SW S+I G        +A   F  MI +               
Sbjct: 460 IDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR--------------- 504

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
                            ++P+  TLV V+SAC  + AL  GK IHA+  + G+  +  + 
Sbjct: 505 -----------------LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMP 547

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             ++DMY++ G ++ A + F   + + V+SWN L+ G+A  G    + E+F  M +S V+
Sbjct: 548 NAILDMYVRCGRMEYAWKQFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVS 606

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           PNE+TF+ +L AC   G+V EG  +FNSM  ++ + PN KHY C+VDLLGR+G L+EA E
Sbjct: 607 PNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYE 666

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            I+ MPM PD A WGALL +C+ H   E+GE     + +      G+++LLSN++A  G+
Sbjct: 667 FIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGK 726

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD V EVR MM + G++  PGCS +E  G +H FL+ D  HPQI EI+ +L+   KK+K 
Sbjct: 727 WDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKE 786

Query: 705 EGY-APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            G   P++  +  DI +  K      HSE+LAI FGLI   P  PI + KNL +C  CH 
Sbjct: 787 AGVEGPESSHM--DIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHN 844

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             KFISR   REI VRD  +FHHFK G CSC D
Sbjct: 845 IVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 159/574 (27%), Positives = 258/574 (44%), Gaps = 87/574 (15%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           +PN  I+   +   + R     A+     M    + V++  Y  L +    + +  EG  
Sbjct: 73  NPNSHIYQLCLLGNLDR-----AMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSR 127

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           ++ +V  +     + + N L++M+   G+L  A  +F      +L SWN ++ GY  A  
Sbjct: 128 VYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGL 187

Query: 213 VEEAKFIYNKM------P---------------------------------ERNIIASNS 233
            +EA  +Y++M      P                                 E ++   N+
Sbjct: 188 FDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNA 247

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ + G+V  A  +F +MP +D +SW+A+IS Y +N +  E L LF  MI + V  D
Sbjct: 248 LITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPD 307

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + + SV++AC  L   + G  +H   ++       ++ N+LI MYSS G I  AE +F 
Sbjct: 308 LMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFS 367

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                DL+SW +MISGY  C   +KA                               L  
Sbjct: 368 RTECRDLVSWTAMISGYENCLMPQKA-------------------------------LET 396

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           +  M+  GI PDE T+  V+SAC+ L  LD G  +H   ++ GL   SI+  +LIDMY K
Sbjct: 397 YKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAK 456

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
             C+D ALE+FH T EK + SW ++I+G  +N    ++L  F EM +  + PN +T V V
Sbjct: 457 CKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCV 515

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM----VDLLGRAGMLKEAEELIESM 589
           L AC  +G +  G       I  H L       G M    +D+  R G ++ A +  +  
Sbjct: 516 LSACARIGALTCGKE-----IHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWK--QFF 568

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
            +  +V +W  LL    + G       + +++VE
Sbjct: 569 SVDHEVTSWNILLTGYAERGKGAHATELFQRMVE 602



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 24/331 (7%)

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                +S    M    I  ++   V++I  C    A  +G  +++Y+  +   ++  LG 
Sbjct: 86  NLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGN 145

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+ M+++ G + +A  VF   E++ + SWN L+ G+A  GL D++L+++  M   GV P
Sbjct: 146 ALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKP 205

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +  TF  VL  C  M  +  G R  +  +  +  E +      ++ +  + G +  A  +
Sbjct: 206 DVYTFPCVLRTCGGMPNLVRG-REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
            + MP + D  +W A++    ++G    G R+   +++   D D    + S I A +   
Sbjct: 265 FDKMP-NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPD-LMTMTSVITACELLG 322

Query: 646 DDVL--EVRGMMVRRGVVKIPG-----CSMIEANGIIHEF-LAGDRTHPQ--------IN 689
           DD L  ++ G ++R    + P        M  + G+I E      RT  +        I+
Sbjct: 323 DDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMIS 382

Query: 690 EIDNMLD-----EMAKKLKLEGYAPDTLEVA 715
             +N L      E  K ++ EG  PD + +A
Sbjct: 383 GYENCLMPQKALETYKMMEAEGIMPDEITIA 413


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/495 (47%), Positives = 320/495 (64%), Gaps = 7/495 (1%)

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMI 367
           + A    H  A+K G   +  + N L+ +Y + G ++ A ++FD     +LD  SWN+M+
Sbjct: 132 LAAAGLAHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMV 191

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           SGY KCG +E AR +F  M E+ +VSWS MI    +  +FSE L +F +M  +G RPD  
Sbjct: 192 SGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAV 251

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGL---KINSILGTTLIDMYMKLGCVDNALEVF 484
            L SV+ AC HL AL++G+W+H +++  GL     N +L T L+DMY K GC+D A  VF
Sbjct: 252 VLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVF 311

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            G + + V  WNA+I G AMNG   ++LE+F  M   G  PNE TFV VL AC H G VD
Sbjct: 312 DGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVD 371

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG   F SM  +H +EP  +HYGC+ DLLGRAG+L+EAE ++  MPM P  + WGAL+ +
Sbjct: 372 EGKEIFRSMC-DHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSS 430

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C  H +  +GERVG+KL+EL+PD  G +V+L N++A  G W+D   +R MM  RG  K  
Sbjct: 431 CLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKET 490

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-K 723
           G S IE NG++HEF +GD  HPQ  +I  +L++M ++L+L GY  DT +V  D+D EE K
Sbjct: 491 GLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDK 550

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
             TL  HSE+LA+AFG++      PIRI+KNLR+C DCH  AK +S+ + REI++RDRHR
Sbjct: 551 GNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHR 610

Query: 784 FHHFKHGSCSCMDFW 798
           FH F+ G CSC DFW
Sbjct: 611 FHLFRGGVCSCNDFW 625



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 156/355 (43%), Gaps = 70/355 (19%)

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGYVN 209
           L H   LK G  +   V N L+ +Y   G LS AR++FD S    LD  SWN++++GY  
Sbjct: 137 LAHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGY-- 194

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI-SC 268
                                        G+ G++  A  +F  MP++ LVSWSA+I +C
Sbjct: 195 -----------------------------GKCGDLEAAREVFVRMPERGLVSWSAMIDAC 225

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI--- 325
               E + EAL +F  M+ +    D VV+ SVL ACA+L  ++ G  VH      G+   
Sbjct: 226 IRAGE-FSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRS 284

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + L+ AL+ MY  CG +  A  +FD   + D++ WN+MI G    G  ++A      
Sbjct: 285 PDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRA------ 338

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                    L LF  M   G  P+E+T V V+ ACTH   +D+G
Sbjct: 339 -------------------------LELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEG 373

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           K I   +  +G++        L D+  + G ++ A  V      E   S W AL+
Sbjct: 374 KEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALM 428



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 124/307 (40%), Gaps = 46/307 (14%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM- 223
           D +  NT+++ Y  CGDL AAR++F   P   LVSW++++   + A    EA  ++++M 
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242

Query: 224 -----P------------------ER------------------NIIASNSMIVLFGRKG 242
                P                  ER                  N++   +++ ++ + G
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            + EA  +F  +  +D+V W+A+I     N   + AL LF  M+D   + +E   V VL 
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLI 361
           AC +   V  G  +       GIE        L  +    G +  AE  L D        
Sbjct: 363 ACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHAS 422

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            W +++S  L   +V     +   +IE    D   +  + + YA +  + +  +L   M+
Sbjct: 423 QWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMME 482

Query: 419 HHGIRPD 425
             G + +
Sbjct: 483 ERGAKKE 489



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 104/245 (42%), Gaps = 20/245 (8%)

Query: 59  IADTFAASRLIKFSTDLL-----PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + DT  A+ L  FS + +        ++  + ++F  +       ++ M+ A I+     
Sbjct: 173 VFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFS 232

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD---SDVYVNN 170
           +A+ ++  M+ N    D      + +A A   ++  G+ +H  +   G      +V +  
Sbjct: 233 EALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLET 292

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA 230
            L++MY  CG +  A  +FD     D+V WN+++ G     + + A  ++ +M +   + 
Sbjct: 293 ALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVP 352

Query: 231 SNSMIVLF----GRKGNVAEACRLFKEM------PKKDLVSWSALISCYEQNEMYEEALV 280
           + S  V+        G V E   +F+ M      P+++   +  L     +  + EEA  
Sbjct: 353 NESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRRE--HYGCLADLLGRAGLLEEAEA 410

Query: 281 LFMNM 285
           + ++M
Sbjct: 411 VLLDM 415


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/820 (32%), Positives = 427/820 (52%), Gaps = 73/820 (8%)

Query: 18   VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
            ++A  IF     LS + +   K Q F+   Q+   +I  G  ++T+  + L+   +    
Sbjct: 252  MHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 78   FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
             I      +IF+ + S +G  +N+++   +Q+    +A+ L+  M  + +  D  T   L
Sbjct: 312  LISAE---RIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASL 368

Query: 138  AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
              A A   ++ +G  +H H +KAG  +D+ +  +L+++Y+ C D+  A K F  +   ++
Sbjct: 369  LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENI 428

Query: 198  VSWNSILAGYVNADNVEEAKFIYNKMP--------------------------------- 224
            V WN +L  Y   DN+ ++  I+ +M                                  
Sbjct: 429  VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 225  ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                  + N+   + +I ++ + G +A A R+ + +P+ D+VSW+A+I+ Y Q++M+ EA
Sbjct: 489  VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 279  LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
            L LF  M    +  D +   S +SACA +  ++ G  +HA +                  
Sbjct: 549  LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQS------------------ 590

Query: 339  YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
                         + AG   DL   N++IS Y +CG +++A   F+ + +K+ +SW++++
Sbjct: 591  -------------YAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLV 637

Query: 399  SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            SG AQ   F E L +F+ M       +  T  S ISA   L  + QG+ IH+ + K G  
Sbjct: 638  SGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697

Query: 459  INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                +  +LI +Y K G + +A   F+   E+ V SWNA+I G++ +G   ++L +F EM
Sbjct: 698  SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 519  KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            K  G+ PN +TFVGVL AC H+GLV EG  +F SM + H L P S+HY C+VDLLGRAG 
Sbjct: 758  KVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQ 817

Query: 579  LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            L  A E I+ MP+  D   W  LL AC  H + E+GER    L+EL+P+    +VL+SNI
Sbjct: 818  LDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNI 877

Query: 639  HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
            +A   +W      R +M   GV K PG S IE    +H F AGD+ HP  N+I   +  +
Sbjct: 878  YAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHL 937

Query: 699  AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
             ++    GY  D+  +  + +Q +K+     HSEKLAIAFGL+++    PIR+MKNLR+C
Sbjct: 938  NRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVC 997

Query: 759  NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            NDCH   K++S+  +R I+VRD HRFHHF  G CSC DFW
Sbjct: 998  NDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  203 bits (516), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 147/587 (25%), Positives = 267/587 (45%), Gaps = 75/587 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F    + + F +N M+  ++ +    Q  CL++ ML   +  + YT+  + +A     
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 146 SVFEG-KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             F   K +H      GFDS   V N LI++Y+  G + +A+K+F+   + D+V+W +++
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 205 AGYVNADNVEEAKFIYNKM------PERNIIAS--------------------------- 231
           +G       EEA  ++  M      P   +++S                           
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                 N ++ L+ R   +  A R+F  M  +D VS+++LIS   Q    + AL LF  M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               +  D + V S+LSACA++  +  G  +H+ A+K G+   I L+ +L+ +YS     
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS----- 408

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     KC  VE A   F     +++V W+ M+  Y Q D
Sbjct: 409 --------------------------KCADVETAHKFFLXTETENIVLWNVMLVAYGQLD 442

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
             S++  +F +MQ  G+ P++ T  S++  CT L AL  G+ IH ++ K G ++N  + +
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LIDMY K G +  AL +     E  V SW A+I G+  + +  ++L++F EM+  G+  
Sbjct: 503 VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 526 NEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           + I F   + AC  +  + +G + H  S       + +  +   ++ L  R G ++EA  
Sbjct: 563 DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQEAYL 620

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
             E +    ++ +W +L+    + G  E   +V  +++  + + + F
Sbjct: 621 AFEKIGDKNNI-SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMF 666



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 248/534 (46%), Gaps = 75/534 (14%)

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           I L   M    V  +   Y  L +      S+FE   +H  + K+GFD +  + ++L++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI------- 228
           Y   GD   A K+FDE+    + SWN ++  +V   +  +   ++ +M    I       
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 229 ---------------------------------IASNSMIVLFGRKGNVAEACRLFKEMP 255
                                            + +N +I L+ + G +  A ++F  + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            KD+V+W A+IS   QN + EEA++LF +M    +     V+ SVLSA   + + + G  
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H L +K G      + N L+ +YS   ++ +AE++F   ++ D +S+NS+ISG ++ G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
            ++A                               L LF +MQ   ++PD  T+ S++SA
Sbjct: 343 SDRA-------------------------------LELFTKMQRDCLKPDCITVASLLSA 371

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C  + AL +G  +H++  K G+  + IL  +L+D+Y K   V+ A + F  TE + +  W
Sbjct: 372 CASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLW 431

Query: 496 NALIIGFA-MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           N +++ +  ++ L+D S E+F +M+  G+ PN+ T+  +L  C  +G +  G +    +I
Sbjct: 432 NVMLVAYGQLDNLSD-SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +    + N      ++D+  + G L  A  ++  +P   DV +W A++    +H
Sbjct: 491 KT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 19/214 (8%)

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           S+ + L   M+  G+R +    + ++  C    +L +   +H  I K+G     +L  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +D Y + G    A++VF     + V SWN +I  F       +   +F  M   G+TPN 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG---------CMVDLLGRAGM 578
            TF GVL AC  +G    G   FN + Q H     + +YG          ++DL  + G 
Sbjct: 160 YTFAGVLKAC--VG----GDIAFNYVKQVH---SRTFYYGFDSSPLVANLLIDLYSKNGY 210

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ A+++   + M  D+ TW A++    ++G  E
Sbjct: 211 IESAKKVFNCICM-KDIVTWVAMISGLSQNGLEE 243


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/705 (37%), Positives = 391/705 (55%), Gaps = 81/705 (11%)

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +R+  + N  ++AI  Y  M  +    DN+ +P + +A +    +  G+ IH   +K G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 163 -DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             S V V NTL+NMY  CG +    K F                                
Sbjct: 124 GSSSVTVANTLVNMYGKCGGI--GDKTF-------------------------------- 149

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                    +N+++ ++ + G V ++  LF+    +D+VSW+ +IS + Q++ + EAL  
Sbjct: 150 --------TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAF 201

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M+   V +D V + SVL AC++L  +  G  +HA         Y+   N LI     
Sbjct: 202 FRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHA---------YVLRNNDLI----- 247

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
                  E  F     +D+         Y  C  VE  R +FD ++ + +  W+ MISGY
Sbjct: 248 -------ENSFVGSALVDM---------YCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 402 AQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTH-LVALDQGKWIHAYIRKNGLKI 459
           A++    + L LF+EM +  G+ P+  T+ SV+ AC H L A+ +GK IHAY  +N L  
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS 351

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM- 518
           +  +G+ L+DMY K GC++ +  VF+    K V +WN LI+   M+G  +++LE+F  M 
Sbjct: 352 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMV 411

Query: 519 ----KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
               +     PNE+TF+ V  AC H GL+ EG   F  M  +H +EP S HY C+VDLLG
Sbjct: 412 AEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLG 471

Query: 575 RAGMLKEAEELIESMPMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           RAG L+EA EL+ +MP   D V  W +LLGAC+ H + E+GE   + L+ L+P+    +V
Sbjct: 472 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 531

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI++S G W+  +EVR  M + GV K PGCS IE    +H+F+AGD +HPQ  ++  
Sbjct: 532 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHG 591

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            L+ +++K++ EGY PDT  V  ++D++EKE  L  HSEKLAIAFG++   P   IR+ K
Sbjct: 592 FLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAK 651

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+CNDCH A KFIS+  +REI+VRD  RFHHFK G+CSC D+W
Sbjct: 652 NLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 173/381 (45%), Gaps = 55/381 (14%)

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P +   SW   +    ++  + EA+  ++ M       D     +VL A + L  +K G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 315 SVHALAVKIGI-ECYINLQNALIHMYSSCG--------------------EITTAEKLFD 353
            +HA AVK G     + + N L++MY  CG                     +  ++ LF+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
           +  + D++SWN+MI                               S ++Q D+FSE L+ 
Sbjct: 173 SFVDRDMVSWNTMI-------------------------------SSFSQSDRFSEALAF 201

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI-RKNGLKINSILGTTLIDMYM 472
           F  M   G+  D  T+ SV+ AC+HL  LD GK IHAY+ R N L  NS +G+ L+DMY 
Sbjct: 202 FRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC 261

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFV 531
               V++   VF     + +  WNA+I G+A NGL +K+L +F EM K +G+ PN  T  
Sbjct: 262 NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA 321

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            V+ AC H        +  ++    + L  +      +VD+  + G L  +  +   MP 
Sbjct: 322 SVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP- 380

Query: 592 SPDVATWGALLGACKKHGDHE 612
           + +V TW  L+ AC  HG  E
Sbjct: 381 NKNVITWNVLIMACGMHGKGE 401



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 176/382 (46%), Gaps = 57/382 (14%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASAL-RLSVFEGKLIHDH 156
           +NTM+ ++ Q +   +A+  ++LM+   V +D  T   +L   S L RL V  GK IH +
Sbjct: 182 WNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV--GKEIHAY 239

Query: 157 VLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           VL+      + +V + L++MY  C  + + R++FD      +  WN++++GY      E+
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 216 AKFIYNKMPE------------------------------------RNIIASN-----SM 234
           A  ++ +M +                                    RN++AS+     ++
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-----R 289
           + ++ + G +  + R+F EMP K++++W+ LI     +   EEAL LF NM+        
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTA 348
              +EV  ++V +AC++  ++  G ++ + +    G+E   +    ++ +    G++  A
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 349 EKLFDA-GHNLDLI-SWNSMISGYLKCGSVEKARALFDAM--IEKDVVSWSTMISG-YAQ 403
            +L +      D + +W+S++       +VE        +  +E +V S   ++S  Y+ 
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 539

Query: 404 HDQFSETLSLFMEMQHHGIRPD 425
              +++ + +   M+  G++ +
Sbjct: 540 AGLWNKAMEVRKNMRQMGVKKE 561



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 28/236 (11%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           LI ++F  S L+    +     ++    ++F  +      ++N M+  Y +  + ++A+ 
Sbjct: 246 LIENSFVGSALVDMYCNCR---QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 302

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALR--LSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           L+  M+     + N T       + +    ++ +GK IH + ++    SD+ V + L++M
Sbjct: 303 LFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDM 362

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMI 235
           YA CG L+ +R++F+E P  ++++WN ++         EEA  ++  M            
Sbjct: 363 YAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNM------------ 410

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRV 290
                   VAEA R  +  P +  V++  + +    + +  E L LF  M  DH V
Sbjct: 411 --------VAEAGRGGEAKPNE--VTFITVFAACSHSGLISEGLNLFYRMKHDHGV 456


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 345/553 (62%), Gaps = 32/553 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A +LF+ +P+ D+V ++++   Y ++    +A+ LF+  +++ ++ D+    S+L AC  
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
               + G  +H LA+K+G+     +   LI+MY+ C +                      
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCND---------------------- 177

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                    V+ A+ +FD ++E  VVS++ +I+GYA+  + +E LSLF ++Q   ++P++
Sbjct: 178 ---------VDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPND 228

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T++SV+S+C  L ALD GKWIH Y++KNGL     + T LIDMY K G +D A+ VF  
Sbjct: 229 VTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFES 288

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
              +   +W+A+I+ +AM+G     + MF EM ++ V P+EITF+G+L AC H GLVDEG
Sbjct: 289 MSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEG 348

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R+F SM + + + P  KHYGCMVDLLGRAG+L EA + I+ +P+ P    W  LL +C 
Sbjct: 349 FRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCS 408

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG+ E+ ++V  +++EL   H G +V+LSN+ A  G+W+DV  +R +M+ +G VKIPGC
Sbjct: 409 SHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGC 468

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDIDQEEKET 725
           S IE + ++HEF +GD  H     +   LDE+ K+LK  GY PDT L V  D++ EEKE 
Sbjct: 469 SSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEI 528

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
           TL  HSEKLAI+FGL+   P   IR++KNLR+C DCH+AAK IS   DREI++RD  RFH
Sbjct: 529 TLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFH 588

Query: 786 HFKHGSCSCMDFW 798
           HFK G CSC D+W
Sbjct: 589 HFKDGKCSCGDYW 601



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 195/424 (45%), Gaps = 41/424 (9%)

Query: 8   AHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASR 67
           A     I+ S +    +  T   S L + L KC S K+  QI +  I T L  D    ++
Sbjct: 4   APFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTK 63

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
           LI   T       M Y+ ++F  +  P+  +FN+M R Y + N P +AI L+   LN N+
Sbjct: 64  LINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNL 123

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
             D+YT+P L +A  +  +  +GK +H   +K G + + YV  TLINMYA C D+  A++
Sbjct: 124 LPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQR 183

Query: 188 LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN--------------- 232
           +FDE     +VS+N+I+ GY  +    EA  ++ ++  R +  ++               
Sbjct: 184 VFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGA 243

Query: 233 ------------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                                   ++I ++ + G++  A  +F+ M  +D  +WSA+I  
Sbjct: 244 LDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVA 303

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIEC 327
           Y  +   ++ + +F  M   +V  DE+  + +L AC++  +V  G    ++++   GI  
Sbjct: 304 YAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIP 363

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            I     ++ +    G +  A K  D        I W +++S     G++E A+ + + +
Sbjct: 364 GIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQI 423

Query: 387 IEKD 390
           +E D
Sbjct: 424 LELD 427



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
            S++ A  LF+A+ + D+V +++M  GY++ +   + +SLF++  ++ + PD+ T  S++
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC    A  QGK +H    K GL  N  +  TLI+MY     VD A  VF    E  V 
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           S+NA+I G+A +   +++L +F +++   + PN++T + VL +C  +G +D G +  +  
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEY 253

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE- 612
           ++++ L+   K    ++D+  + G L  A  + ESM +  D   W A++ A   HG  + 
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAMHGQGQD 312

Query: 613 ---MGERVGRKLVELQPDHDGFHVLL 635
              M E + R   ++QPD   F  LL
Sbjct: 313 VMSMFEEMAR--AKVQPDEITFLGLL 336


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/809 (32%), Positives = 432/809 (53%), Gaps = 76/809 (9%)

Query: 32  ILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           +L + L  C     F+Q   + +Q+   G  ++T   + LI      L F  +S + ++F
Sbjct: 145 VLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIAL---YLRFGSLSLAERVF 201

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
           + +   +   FNT++  + Q    + A+ +++ M  +    D  T   L  A A    + 
Sbjct: 202 SEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLN 261

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY- 207
           +GK +H ++LKAG   D  +  +L+++Y  CG +  A ++F      ++V WN +L  Y 
Sbjct: 262 KGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYG 321

Query: 208 --------------VNADNVEEAKFIYNKMP------------------------ERNII 229
                         + A  V   +F Y  +                         E ++ 
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMY 381

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S  +I ++ + G + +A R+ + +  KD+VSW+++I+ Y Q+E  +EAL  F +M    
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D + + S +SACA +  ++ G  +H+                               
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQQIHS------------------------------- 470

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +++ +G++ D+  WN++++ Y +CG  ++A +LF+A+  KD ++W+ M+SG+AQ   + E
Sbjct: 471 RVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEE 530

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L +F++M   G++ +  T VS ISA  +L  + QGK IHA + K G    + +   LI 
Sbjct: 531 ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALIS 590

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           +Y K G +++A   F    E+   SWN +I   + +G   ++L++F +MK+ G+ PN++T
Sbjct: 591 LYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVT 650

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+GVL AC H+GLV+EG  +F SM  EH + P   HY C+VD+LGRAG L  A + +E M
Sbjct: 651 FIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEM 710

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+S +   W  LL AC+ H + E+GE   + L+EL+P     +VLLSN +A  G+W    
Sbjct: 711 PVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRD 770

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR MM  RGV K PG S IE   ++H F  GDR HP  ++I   L ++  +L   GY  
Sbjct: 771 HVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQ 830

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
               +  + ++E+K+ T F HSEKLA+AFGL+++ P  P+R++KNLR+CNDCHT  KF S
Sbjct: 831 GNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTS 890

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               REIV+RD +RFHHF +G+CSC DFW
Sbjct: 891 EVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/603 (26%), Positives = 279/603 (46%), Gaps = 81/603 (13%)

Query: 49  ILSQMILTGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           I ++ I  GL  D  A + LI  ++   L    +  + ++F  L + +   +  M+  Y 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGL----VQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFE-GKLIHDHVLKAGFDSD 165
           +  + ++A+ LY  M  +  GV    Y L +  SA  + ++FE G+L+H  V K G  S+
Sbjct: 120 RNGLGEEAVGLYHQM--HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSE 177

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-- 223
             V N LI +Y   G LS A ++F E P  D V++N++++ +    N E A  I+ +M  
Sbjct: 178 TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 224 ----PERNIIAS---------------------------------NSMIVLFGRKGNVAE 246
               P+   IAS                                  S++ L+ + G + E
Sbjct: 238 SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +FK   + ++V W+ ++  Y Q     ++  LF  M+   V  +E     +L  C  
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              +  G  +H L++K G E  + +   LI MYS                          
Sbjct: 358 AGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYS-------------------------- 391

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                K G ++KAR + + +  KDVVSW++MI+GY QH+   E L  F +MQ  GI PD 
Sbjct: 392 -----KYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDN 446

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L S ISAC  + A+ QG+ IH+ +  +G   +  +   L+++Y + G    A  +F  
Sbjct: 447 IGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEA 506

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            E K   +WN ++ GFA +GL +++LE+F +M ++GV  N  TFV  + A  ++  + +G
Sbjct: 507 IEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQG 566

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  ++ + +      ++    ++ L G+ G +++A+     M     V +W  ++ +C 
Sbjct: 567 -KQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHV-SWNTIITSCS 624

Query: 607 KHG 609
           +HG
Sbjct: 625 QHG 627



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 136/529 (25%), Positives = 238/529 (44%), Gaps = 73/529 (13%)

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           +IH   +  G   D    N LI++YA  G +  AR++F++    D VSW ++L+GY    
Sbjct: 63  VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 212 NVEEAKFIYNKM------PERNIIAS---------------------------------N 232
             EEA  +Y++M      P   +++S                                 N
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I L+ R G+++ A R+F EMP  D V+++ LIS + Q    E AL +F  M       
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D V + S+L+ACA++  +  G  +H+  +K G+     ++ +L+ +Y  CG I  A ++F
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
            +G   +++ WN                                M+  Y Q    +++  
Sbjct: 303 KSGDRTNVVLWN-------------------------------LMLVAYGQISDLAKSFD 331

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF +M   G+RP+E T   ++  CT+   ++ G+ IH    K G + +  +   LIDMY 
Sbjct: 332 LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYS 391

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D A  +    E K V SW ++I G+  +    ++LE F +M+  G+ P+ I    
Sbjct: 392 KYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLAS 451

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            + AC  +  + +G +  +S +       +   +  +V+L  R G  KEA  L E++   
Sbjct: 452 AISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE-H 509

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
            D  TW  ++    + G +E    V  K+ +    ++ F   +S+I AS
Sbjct: 510 KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVF-TFVSSISAS 557



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 111/283 (39%), Gaps = 44/283 (15%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  +   S +  ++G+  H+   + LSLF                  +  C   V     
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVK---- 56

Query: 446 KW-----IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
            W     IHA     GL  + I G  LID+Y K G V  A  VF     +   SW A++ 
Sbjct: 57  HWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLS 116

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG-------------- 546
           G+A NGL ++++ ++ +M  SGV P       VL AC    L ++G              
Sbjct: 117 GYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCS 176

Query: 547 -----------HRHFNSMIQEHRLEPNSKH-----YGCMVDLLGRAGMLKEAEELIESMP 590
                      +  F S+    R+     +     +  ++    + G  + A E+ E M 
Sbjct: 177 ETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMR 236

Query: 591 MS---PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
           +S   PD  T  +LL AC   GD   G+++   L++  + PD+
Sbjct: 237 LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDY 279


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/803 (33%), Positives = 415/803 (51%), Gaps = 78/803 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            ++  S     Q  +Q++L G   D    S L K +  L     + Y+  IF  ++ P+ 
Sbjct: 27  FKRSTSISHLAQTHAQIVLHGFRNDI---SLLTKLTQRLSDLGAIYYARDIFLSVQRPDV 83

Query: 97  FIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           F+FN +MR +     P  ++ ++  L  + ++  ++ TY     A++       G +IH 
Sbjct: 84  FLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHG 143

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----VNAD 211
             +  G DS++ + + ++ MY     +  ARK+FD  P  D + WN++++GY    +  +
Sbjct: 144 QAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 212 NVEEAKFIYNKMPER-------NIIAS-----------------------------NSMI 235
           +++  + + N+   R       +I+ +                                I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            L+ + G +  A  LF+E  + D+V+++A+I  Y  N   E +L LF  ++     +   
Sbjct: 264 SLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSS 323

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VS++    +L ++ A   +H  ++K     + ++  AL  +YS   EI +A KLFD  
Sbjct: 324 TLVSLVPVSGHLMLIYA---IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDES 380

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
               L SWN+MISGY + G  E A                               +SLF 
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDA-------------------------------ISLFR 409

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ+    P+  T+  ++SAC  L AL  GKW+H  +R    + +  + T LI MY K G
Sbjct: 410 EMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A  +F    +K   +WN +I G+ ++G   ++L +FSEM  SG+ P  +TF+ VL 
Sbjct: 470 SIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLY 529

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV EG   FNSMI  +  EP+ KHY C+VD+LGRAG L+ A + IE+MP+ P  
Sbjct: 530 ACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGP 589

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           + W  LLGAC+ H D  +   V  KL EL PD+ G+HVLLSNIH++   +     VR   
Sbjct: 590 SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTA 649

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
            +R + K PG ++IE     H F +GD++HPQ+  I   L+++  K++  GY P+T    
Sbjct: 650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELAL 709

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+++EE+E  +  HSE+LAIAFGLI   P   IRI+KNLR+C DCHTA K IS+  +R 
Sbjct: 710 HDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERV 769

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IVVRD +RFHHFK G CSC D+W
Sbjct: 770 IVVRDANRFHHFKDGVCSCGDYW 792


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/799 (33%), Positives = 420/799 (52%), Gaps = 89/799 (11%)

Query: 57  GLIADTFAASRL----IKFSTDLLPFI------------EMSYSFKIFAFLESPNGFI-F 99
           G++ D F  + +    IK+  D   F+            +++ + K+F  +   N  + +
Sbjct: 69  GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSW 128

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N+++ AY    +  +A+CL+  ML   V  + YT+    QA      +  G  IH  +LK
Sbjct: 129 NSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILK 188

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA-KF 218
           +G   DVYV N L+ MY   G +  A  +F      D+V+WNS+L G++      EA +F
Sbjct: 189 SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 219 IYNKM-----PER---------------------------------NIIASNSMIVLFGR 240
            Y+       P++                                 NI+  N++I ++ +
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
              ++   R F  M  KDL+SW+   + Y QN+ Y +AL L   +    + VD  ++ S+
Sbjct: 309 CCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSI 368

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC  L  +     +H   ++ G+                                 D 
Sbjct: 369 LLACRGLNCLGKIKEIHGYTIRGGLS--------------------------------DP 396

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +  N++I  Y +CG ++ A  +F+++  KDVVSW++MIS Y  +   ++ L +F  M+  
Sbjct: 397 VLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKET 456

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+ PD  TLVS++SA   L  L +GK IH +I + G  +   +  TL+DMY + G V++A
Sbjct: 457 GLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDA 516

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F  T+ + +  W A+I  + M+G  + ++E+F  MK   + P+ ITF+ +L AC H 
Sbjct: 517 YKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHS 576

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG      M  E++LEP  +HY C+VDLLGR   L+EA ++++SM   P    W A
Sbjct: 577 GLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCA 636

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LLGAC+ H + E+GE    KL+EL  D+ G +VL+SN+ A+ GRW DV EVR  M   G+
Sbjct: 637 LLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGL 696

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDID 719
            K PGCS IE    IH FL+ D+ HP+ ++I   L ++ +KLK E GY   T  V  ++ 
Sbjct: 697 TKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVG 756

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEK   L+ HSE+LAIA+GL+  +   PIR+ KNLR+C DCH+    +SR F+RE++VR
Sbjct: 757 EEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVR 816

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK G CSC DFW
Sbjct: 817 DASRFHHFKDGMCSCGDFW 835



 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 166/591 (28%), Positives = 292/591 (49%), Gaps = 76/591 (12%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  +   + F +N MM  Y+       A+ +Y+ M +  V  D+YT+P+L +A  +   
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILA 205
           +F G  IH   +K G DS V+V N+L+ +YA C D++ ARKLFD   V  D+VSWNSI++
Sbjct: 74  LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIIS 133

Query: 206 GYVNADNVEEAKFIYNKMPERNIIA----------------------------------- 230
            Y       EA  ++++M +  ++                                    
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 231 ----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
               +N+++ ++ R G + EA  +F  +  KD+V+W+++++ + QN +Y EAL  F ++ 
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  +  D+V ++S++ A   L  +  G  +HA A+K G +  I + N LI MY+ C  ++
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
              + FD   + DLISW                               +T  +GYAQ+  
Sbjct: 314 YGGRAFDLMAHKDLISW-------------------------------TTAAAGYAQNKC 342

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + + L L  ++Q  G+  D   + S++ AC  L  L + K IH Y  + GL  + +L  T
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNT 401

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           +ID+Y + G +D A+ +F   E K V SW ++I  +  NGLA+K+LE+FS MK++G+ P+
Sbjct: 402 IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD 461

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +T V +L A   +  + +G      +I++  +   S     +VD+  R G +++A ++ 
Sbjct: 462 YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS-NTLVDMYARCGSVEDAYKIF 520

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
            +   + ++  W A++ A   HG  E    +  ++ +  + PDH  F  LL
Sbjct: 521 -TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALL 570



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 230/514 (44%), Gaps = 77/514 (14%)

Query: 29  NLSILETHLQKCQ--SF-KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           N       LQ C+  SF K   QI + ++ +G + D + A+ L+      + F +M  + 
Sbjct: 159 NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAM---YVRFGKMPEAA 215

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            IF  LE  +   +N+M+  +IQ  +  +A+  +  + N ++  D  +   +  AS    
Sbjct: 216 VIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLG 275

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  GK IH + +K GFDS++ V NTLI+MYA C  +S   + FD     DL+SW +  A
Sbjct: 276 YLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAA 335

Query: 206 GYVNADNVEEAKFIYNKMPERNI------------------------------------- 228
           GY       +A  +  ++    +                                     
Sbjct: 336 GYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSD 395

Query: 229 -IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
            +  N++I ++G  G +  A R+F+ +  KD+VSW+++ISCY  N +  +AL +F +M +
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  D V +VS+LSA  +L+ +K G  +H   ++ G     ++ N L+ MY+ CG +  
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED 515

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A K+F    N +LI W +MI                               S Y  H   
Sbjct: 516 AYKIFTCTKNRNLILWTAMI-------------------------------SAYGMHGYG 544

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR-KNGLKINSILGTT 466
              + LFM M+   I PD  T ++++ AC+H   +++GK     ++ +  L+      T 
Sbjct: 545 EAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTC 604

Query: 467 LIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           L+D+  +  C++ A ++    + E     W AL+
Sbjct: 605 LVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALL 638



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 32/311 (10%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+ G+V +A  +F +M ++ + +W+A++  Y  N     AL ++  M    V  D   
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
              +L AC  +  +  G  +H LA+K G + ++ + N+L+ +Y+ C +I  A KLFD  +
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 357 -NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D++SWNS+IS Y   G   +A                               L LF 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEA-------------------------------LCLFS 149

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EM   G+  +  T  + + AC     +  G  IHA I K+G  ++  +   L+ MY++ G
Sbjct: 150 EMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFG 209

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A  +F   E K + +WN+++ GF  NGL  ++LE F +++ + + P++++ + ++ 
Sbjct: 210 KMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIV 269

Query: 536 ACRHMGLVDEG 546
           A   +G +  G
Sbjct: 270 ASGRLGYLLNG 280


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/745 (35%), Positives = 415/745 (55%), Gaps = 76/745 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ ++  Y       +AI  +  ML      + Y +  + +A + + ++  GK+I   +L
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 159 KAG-FDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           K G F+SDV V   LI+M+    GDL +A K+FD  P  ++V+W  ++  +       +A
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDA 129

Query: 217 KFIYNKM------PER---------------------------------NIIASNSMIVL 237
             ++  M      P+R                                 ++    S++ +
Sbjct: 130 VDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDM 189

Query: 238 FGR---KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE-EALVLFMNMIDHRVMVD 293
           + +    G+V +A ++F  MP  +++SW+A+I+ Y Q+   + EA+ LF+ M+  +V  +
Sbjct: 190 YAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPN 249

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
                SVL ACANL+ +  G  V+AL VK+ +     + N+LI MYS             
Sbjct: 250 HFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYS------------- 296

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             +CG++E AR  FD + EK++VS++T+++ YA+     E   L
Sbjct: 297 ------------------RCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFEL 338

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F E++  G   +  T  S++S  + + A+ +G+ IH+ I K+G K N  +   LI MY +
Sbjct: 339 FNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSR 398

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G ++ A +VF+   +  V SW ++I GFA +G A ++LE F +M ++GV+PNE+T++ V
Sbjct: 399 CGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAV 458

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H+GL+ EG +HF SM  EH + P  +HY C+VDLLGR+G L+EA EL+ SMP   
Sbjct: 459 LSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKA 518

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D       LGAC+ HG+ ++G+     ++E  P     ++LLSN+HAS G+W++V E+R 
Sbjct: 519 DALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRK 578

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M  R + K  GCS IE    +H+F  GD +HPQ  EI + LD++A K+K  GY P T  
Sbjct: 579 KMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDF 638

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D+++E+KE  LF+HSEK+A+A+G I+ S   PIR+ KNLR+C DCHTA K+ S    
Sbjct: 639 VLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRR 698

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           +EIV+RD +RFHHFK G+CSC D+W
Sbjct: 699 KEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 217/458 (47%), Gaps = 76/458 (16%)

Query: 196 DLVSWNSILAGYV-----------------------------------NADNVEEAKFIY 220
           DLVSW+++++ Y                                    N +N+   K I+
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 221 NKMP-----ERNIIASNSMIVLFGR-KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
             +      E ++    ++I +F +  G++  A ++F  MP +++V+W+ +I+ ++Q   
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
             +A+ LF++M+    + D   +  V+SACA + ++  G   H L +K G++  + +  +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 335 LIHMYSSC---GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           L+ MY+ C   G +  A K+FD     +++SW ++I+GY++ G  ++             
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDR------------- 232

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                            E + LF+EM    ++P+  T  SV+ AC +L  +  G+ ++A 
Sbjct: 233 -----------------EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYAL 275

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + K  L   + +G +LI MY + G ++NA + F    EK + S+N ++  +A +  ++++
Sbjct: 276 VVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEA 335

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
            E+F+E++ +G   N  TF  +L     +G + +G +  +S I +   + N      ++ 
Sbjct: 336 FELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ-IHSRILKSGFKSNLHICNALIS 394

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  R G ++ A ++   M    +V +W +++    KHG
Sbjct: 395 MYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHG 431



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 135/555 (24%), Positives = 245/555 (44%), Gaps = 113/555 (20%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  ++K+F  +   N   +  M+  + Q    + A+ L+  M+ +    D +T   +  
Sbjct: 94  DLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVS 153

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC---GDLSAARKLFDESPVLD 196
           A A    +  G+  H  V+K+G D DV V  +L++MYA C   G +  ARK+FD  PV +
Sbjct: 154 ACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHN 213

Query: 197 LVSWNSILAGYVNADNVE-EAKFIYNKMPERNI--------------------------- 228
           ++SW +I+ GYV +   + EA  ++ +M +  +                           
Sbjct: 214 VMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVY 273

Query: 229 ------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                          NS+I ++ R GN+  A + F  + +K+LVS++ +++ Y ++   E
Sbjct: 274 ALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSE 333

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA  LF  +      V+     S+LS  +++  +  G  +H+  +K G +  +++ NALI
Sbjct: 334 EAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALI 393

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MYS CG I  A ++F+   + ++ISW SMI+G+ K G   +A   F  M+E        
Sbjct: 394 SMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEA------- 446

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKN 455
                                   G+ P+E T ++V+SAC+H+  + +G K   +   ++
Sbjct: 447 ------------------------GVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEH 482

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+         ++D+  + G ++ A+E+ +    K     +AL++               
Sbjct: 483 GIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKA----DALVLR-------------- 524

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLG 574
                        TF   LGACR  G +D G +H   MI E   +P +   Y  + +L  
Sbjct: 525 -------------TF---LGACRVHGNMDLG-KHAAEMILEQ--DPHDPAAYILLSNLHA 565

Query: 575 RAGMLKEAEELIESM 589
            AG  +E  E+ + M
Sbjct: 566 SAGQWEEVAEIRKKM 580



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 176/363 (48%), Gaps = 39/363 (10%)

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           K+DLVSWSALISCY  NE   EA+  F +M++     +E     V  AC+N   +  G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 316 VHALAVKIG-IECYINLQNALIHMY-SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           +    +K G  E  + +  ALI M+    G++ +A K+FD   + ++++W  MI+ + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G              +D V                    LF++M   G  PD  TL  V+
Sbjct: 124 G------------FSRDAV-------------------DLFLDMVLSGYVPDRFTLSGVV 152

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL---GCVDNALEVFHGTEEK 490
           SAC  +  L  G+  H  + K+GL ++  +G +L+DMY K    G VD+A +VF      
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 491 GVSSWNALIIGFAMNGLADK-SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
            V SW A+I G+  +G  D+ ++E+F EM +  V PN  TF  VL AC ++  +  G + 
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + +++ + RL   +     ++ +  R G ++ A +  + +    ++ ++  ++ A  K  
Sbjct: 273 Y-ALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVL-FEKNLVSYNTIVNAYAKSL 330

Query: 610 DHE 612
           + E
Sbjct: 331 NSE 333


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/524 (43%), Positives = 337/524 (64%), Gaps = 3/524 (0%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL LF +++      D +     L+ CA      A   +H  A K G   +  ++N LIH
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            YS CG +  A K+FD G  +D+I+WN ++ GY +       R  F  M  +D VSW+T+
Sbjct: 119 AYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTV 178

Query: 398 ISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I+    + +  E +++F EM   +  +PD  TLVSVISA  +L AL QG W HAY+ +  
Sbjct: 179 IAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKE 238

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMF 515
           ++++  L + LI+MY K G ++ A+ VF  +   + V +WNA++ GF  +G ++++LE+F
Sbjct: 239 IEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELF 298

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           + M+ SG  PN+ITF  +L AC H G V+EG  +F  M     +EP+  HYGCMVDL  R
Sbjct: 299 TRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCR 358

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG+ ++AEE+I+ MPM PD A W AL+GAC+ + + E+G++ G +L+E  P+    +VLL
Sbjct: 359 AGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLL 418

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI+A  G W  V +VR +M+  GV K+PG S IE +G+IHEF++GD++H +  ++  ML
Sbjct: 419 SNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEML 478

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
            E+ ++LK+ GYAPDT +V  DID E+ KE++L  HSE+LA+AFGLI+ +P  PIRI+KN
Sbjct: 479 SEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKN 538

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCH A K +S+ + R I+VRD +RFH F+ GSCSC D+W
Sbjct: 539 LRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 165/391 (42%), Gaps = 64/391 (16%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           P  A+ L+  +L +    D   Y L     A   +      +H H  K G  S   V N 
Sbjct: 56  PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNG 115

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           LI+ Y+VCG L  ARK+FD  P +D+++WN +L GY    +    +  + +MP R+ ++ 
Sbjct: 116 LIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSW 175

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N++I      G   EA  +F+EM                              +  +   
Sbjct: 176 NTVIAWCVANGEHEEAVAVFREM------------------------------LASNECQ 205

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D V +VSV+SA A L  +  G   HA   +  IE    L +ALI+MYS CG I  A  +
Sbjct: 206 PDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYV 265

Query: 352 FDAGHNLDLI-SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           F+    L  + +WN+M++G+   G  E+A                               
Sbjct: 266 FENSCALRSVDTWNAMLAGFTASGCSERA------------------------------- 294

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLID 469
           L LF  M+  G  P++ T  ++++AC+H   +++G  +       + ++ +      ++D
Sbjct: 295 LELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVD 354

Query: 470 MYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           ++ + G  + A E+      E   + W AL+
Sbjct: 355 LFCRAGLFEKAEEMIQMMPMEPDAAVWKALV 385


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/550 (42%), Positives = 341/550 (62%), Gaps = 32/550 (5%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF ++P+ D+V ++ +   Y + +    A  LF  ++   +  D+    S+L ACA+   
Sbjct: 77  LFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKA 136

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  +H LA+K+G+   + +   LI+MY++C E+                        
Sbjct: 137 LEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEM------------------------ 172

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                  + AR +FD + E  VV+++ MI+GYA+  + +E LSLF E+Q   ++P + T+
Sbjct: 173 -------DCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTM 225

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +SV+S+C  L ALD GKW+H Y++KNG      + T LIDMY K G +D+A+ VF     
Sbjct: 226 LSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAV 285

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   +W+A+I+ +A++G   K++ +F EM+K+G  P+EITF+G+L AC H GLV+EG  +
Sbjct: 286 RDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEY 345

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F  M  ++ + P  KHYGCMVDLLGRAG L+EA E I  +P+ P    W  LL AC  HG
Sbjct: 346 FYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHG 405

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + E+G+RV  ++ EL   H G +++LSN+ A  GRW+DV  VR +M  RGVVKIPGCS +
Sbjct: 406 NVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSV 465

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDIDQEEKETTLF 728
           E N ++HEF +GD  H    ++   LDE+ K+LKL GY P+T L    D++ EEKE TL 
Sbjct: 466 EVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLR 525

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLAI FGL+   P   IR++KNLR+C DCH+AAK IS  FDR+I++RD  RFHHFK
Sbjct: 526 YHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFK 585

Query: 789 HGSCSCMDFW 798
            G CSC D+W
Sbjct: 586 DGKCSCEDYW 595



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 181/395 (45%), Gaps = 41/395 (10%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KC S ++  Q+ +  I T L +D    ++ I F +       M ++  +F  +  P+ 
Sbjct: 27  LPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDI 86

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +FNTM R Y + + P +A  L+  +L + +  D+YT+P L +A A   ++ EG+ +H  
Sbjct: 87  VLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCL 146

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G   +VYV  TLINMY  C ++  AR++FD+     +V++N+++ GY       EA
Sbjct: 147 AIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEA 206

Query: 217 KFIYNKMPERNIIASN---------------------------------------SMIVL 237
             ++ ++  RN+  ++                                       ++I +
Sbjct: 207 LSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDM 266

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++ +A  +F+ M  +D  +WSA+I  Y  +    +A+ LF  M       DE+  
Sbjct: 267 YAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITF 326

Query: 298 VSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFDAG 355
           + +L AC++  +V+ G    + +  K G+   I     ++ +    G +  A E +    
Sbjct: 327 LGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLP 386

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
                I W +++S     G+VE  + + + + E D
Sbjct: 387 IRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD 421



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 125/235 (53%), Gaps = 2/235 (0%)

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S++ A  LFD + + D+V ++TM  GYA+ D      +LF ++   G+ PD+ T  S++ 
Sbjct: 70  SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLK 129

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC    AL++G+ +H    K GL  N  +  TLI+MY     +D A  VF    E  V +
Sbjct: 130 ACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVT 189

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           +NA+I G+A     +++L +F E++   + P ++T + VL +C  +G +D G +  +  +
Sbjct: 190 YNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG-KWMHEYV 248

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +++      K    ++D+  + G L +A  + E+M +  D   W A++ A   HG
Sbjct: 249 KKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHG 302



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 109/499 (21%), Positives = 190/499 (38%), Gaps = 130/499 (26%)

Query: 131 NYTYPL--LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV---CGDLSAA 185
           N T+PL  L + ++LR    E K +    +K    SD+ V    IN  ++      +  A
Sbjct: 19  NTTHPLSLLPKCTSLR----ELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHA 74

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE-------------- 225
             LFD+ P  D+V +N++  GY   D    A  ++ ++      P+              
Sbjct: 75  HHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASC 134

Query: 226 -------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                               N+    ++I ++     +  A R+F ++ +  +V+++A+I
Sbjct: 135 KALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMI 194

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           + Y +     EAL LF  +    +   +V ++SVLS+CA L  +  G  +H    K G  
Sbjct: 195 TGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFN 254

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            ++ +  ALI MY+ CG +  A  +F+     D  +W++M                    
Sbjct: 255 RFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAM-------------------- 294

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                      I  YA H    + +SLF EM+  G  PDE T + ++ AC+H        
Sbjct: 295 -----------IMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSH-------- 335

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----GVSSWNALIIG 501
                                       G V+   E F+G  +K     G+  +  ++  
Sbjct: 336 ---------------------------TGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDL 368

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
               G  +++ E    +    + P  I +  +L AC   G V+ G R     + E   E 
Sbjct: 369 LGRAGRLEEAYEFIVGLP---IRPTPILWRTLLSACGSHGNVELGKR-----VIEQIFEL 420

Query: 562 NSKH---YGCMVDLLGRAG 577
           +  H   Y  + +L  RAG
Sbjct: 421 DDSHGGDYIILSNLCARAG 439


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/804 (31%), Positives = 439/804 (54%), Gaps = 95/804 (11%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI--- 107
           ++++++G   D F ++ L+   +       +S + ++F      +   +N ++ AY    
Sbjct: 101 ARIVVSGSAGDHFLSNNLLTMYSKC---GSLSSARQVFDTTPERDLVTWNAILGAYAASV 157

Query: 108 --QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-----IHDHVLKA 160
                  Q+ + L++L L  ++G    +   +  A  L+L +  G L     +H + +K 
Sbjct: 158 DSNDGNAQEGLHLFRL-LRASLG----STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 212

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN----------- 209
           G + DV+V+  L+N+Y+ CG +  AR LFD     D+V WN +L GYV            
Sbjct: 213 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 272

Query: 210 --------------------------ADNVEEAKFIY----NKMPERNIIASNSMIVLFG 239
                                      D++E  K ++        + ++  +NS++ ++ 
Sbjct: 273 SEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYS 332

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G    A  +F +M   DL+SW+++IS   Q+ + EE++ LF++++   +  D   + S
Sbjct: 333 KMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLAS 392

Query: 300 VL-----SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           +       AC  L ++  G  +HA A+K G +  +++ + ++ MY               
Sbjct: 393 ITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY--------------- 437

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                           +KCG +  A  +F+ +   D V+W++MISG   +    + L ++
Sbjct: 438 ----------------IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 481

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             M+   + PDE T  ++I A + + AL+QG+ +HA + K     +  +GT+L+DMY K 
Sbjct: 482 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC 541

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +++A  +F     + ++ WNA+++G A +G A++++ +F  MK  G+ P+ ++F+G+L
Sbjct: 542 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 601

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GL  E + + +SM  ++ +EP  +HY C+VD LGRAG+++EA+++IE+MP    
Sbjct: 602 SACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKAS 661

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            +   ALLGAC+  GD E G+RV  +L  L+P     +VLLSNI+A+  RWDDV + R M
Sbjct: 662 ASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKM 721

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M R+ V K PG S I+   ++H F+  DR+HPQ + I + ++EM K ++ +GY PDT  V
Sbjct: 722 MKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFV 781

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++ EEKE +L+ HSEKLAIA+GLI+      IR++KNLR+C DCH A K+IS+ F+R
Sbjct: 782 LLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFER 841

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EIV+RD +RFHHF+ G CSC D+W
Sbjct: 842 EIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/542 (27%), Positives = 263/542 (48%), Gaps = 90/542 (16%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV- 208
           GK  H  ++ +G   D +++N L+ MY+ CG LS+AR++FD +P  DLV+WN+IL  Y  
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 209 ----NADNVEEAKFIYNKMP---------------------------------------E 225
               N  N +E   ++  +                                        E
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            ++  S +++ ++ + G + +A  LF  M ++D+V W+ ++  Y Q  + +EA  LF   
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 286 IDHRVMVDEVVVVSVLSAC--ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
               +  DE  V  +L+ C  A    ++ G  VH +AVK G++  +++ N+L++MYS  G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
               A ++F+   +LDLISWNSMIS    C                            AQ
Sbjct: 336 CAYFAREVFNDMKHLDLISWNSMIS---SC----------------------------AQ 364

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVI-----SACTHLVALDQGKWIHAYIRKNGLK 458
                E+++LF+++ H G++PD  TL S+       AC  LV LDQGK IHA+  K G  
Sbjct: 365 SSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 424

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  + + ++DMY+K G + NA  VF+        +W ++I G   NG  D++L ++  M
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 484

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY--GCMVDLLGRA 576
           ++S V P+E TF  ++ A   +  +++G +   ++I   +L+  S  +    +VD+  + 
Sbjct: 485 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI---KLDCVSDPFVGTSLVDMYAKC 541

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVL 634
           G +++A  L + M +  ++A W A+L    +HG+ E    + + +    ++PD   F  +
Sbjct: 542 GNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 600

Query: 635 LS 636
           LS
Sbjct: 601 LS 602



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 208/445 (46%), Gaps = 52/445 (11%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+    + +GL +D   A+ L+   + +       ++ ++F  ++  +   +N+M+ +  
Sbjct: 307 QVHGIAVKSGLDSDVSVANSLVNMYSKMGC---AYFAREVFNDMKHLDLISWNSMISSCA 363

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR-----LSVFEGKLIHDHVLKAGF 162
           Q ++ ++++ L+  +L+  +  D++T   +  A+A +     + + +GK IH H +KAGF
Sbjct: 364 QSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGF 423

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           DSD++VN+ +++MY  CGD+  A  +F+     D V+W S+++G V+  N ++A  IY++
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 483

Query: 223 MPERNII---------------------------------------ASNSMIVLFGRKGN 243
           M +  ++                                          S++ ++ + GN
Sbjct: 484 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 543

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           + +A RLFK+M  +++  W+A++    Q+   EEA+ LF +M  H +  D V  + +LSA
Sbjct: 544 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 603

Query: 304 CANLTVV-KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           C++  +  +A   +H++    GIE  I   + L+      G +  A+K+ +        S
Sbjct: 604 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 663

Query: 363 WNSMISGYLKC-GSVEKAR---ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            N  + G  +  G VE  +   A   A+   D  ++  + + YA  +++ +       M+
Sbjct: 664 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 723

Query: 419 HHGIRPDEATLVSVISACTHLVALD 443
              ++ D       +    HL  +D
Sbjct: 724 RKNVKKDPGFSWIDVKNMLHLFVVD 748


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/757 (35%), Positives = 416/757 (54%), Gaps = 77/757 (10%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++ +F  +   + F +N ++  Y +     +A+ LY  ML   +  + YT+P + +  A 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              +  GK IH HV++ GF+SDV V N LI MY  CGD+S AR LFD+ P  D +SWN++
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAM 270

Query: 204 LAGYVNADNVEEAKFIYNKMPERNI---------IAS----------------------- 231
           ++GY       E   +++ M E ++         +AS                       
Sbjct: 271 ISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEF 330

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  NS+I ++   G + EA  +F  M  KD+VSW+A+I+    +++  +A+  +  
Sbjct: 331 GGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKM 390

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    ++ DE+ +VSVLSACA +  +  G  +H +A+K G+  ++ + N+LI MYS    
Sbjct: 391 MELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS---- 446

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      KC  V+ A  +F  +  K+VVSW+++I G   +
Sbjct: 447 ---------------------------KCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           ++  E L  F +M+   ++P+  TL+SV+SAC  + AL +GK IHA+  + G+  +  L 
Sbjct: 480 NRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP 538

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             ++DMY++ G    AL  F+ +++K V++WN L+ G+A  G A  ++E+F +M +  + 
Sbjct: 539 NAILDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIH 597

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+EITF+ +L AC   G+V EG  +FN M  ++ L PN KHY C+VD+LGRAG L +A +
Sbjct: 598 PDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYD 657

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            I+ MP+ PD A WGALL AC+ H + E+GE   +++ E      G+++LL N++A  G 
Sbjct: 658 FIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGN 717

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD V +VR +M  RG+   PGCS +E  G +H FL+GD +H Q  EI+ +LD    K+K 
Sbjct: 718 WDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKE 777

Query: 705 EGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            G+    L+ +F  + E     +F  HSE+ AIAFGLI  +P  PI + KNL +C+ CH 
Sbjct: 778 NGFG--NLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHN 835

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD--FW 798
             KFIS    REI VRD   +HHFK G CSC D  +W
Sbjct: 836 MVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 167/581 (28%), Positives = 262/581 (45%), Gaps = 84/581 (14%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N  +R    +   +QA+   + ML   + V+   Y  L +    R +  EG  +++ V  
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
           +     V + N L++M+   G+L  A  +F +    D+ SWN ++ GY  A   +EA  +
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 220 YNKM------P---------------------------------ERNIIASNSMIVLFGR 240
           Y++M      P                                 E ++   N++I ++ +
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G+++ A  LF +MPK+D +SW+A+IS Y +N    E L LF  M +  V  D + + +V
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
            SAC  L   + G  VH   VK      I++ N+LI MYSS G +  AE +F    + D+
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +SW +MI+  +                                H    + +  +  M+  
Sbjct: 366 VSWTAMIASLV-------------------------------SHKLPFKAVETYKMMELE 394

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           GI PDE TLVSV+SAC  +  LD G  +H    K GL  + I+  +LIDMY K  CVDNA
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           LEVF     K V SW +LI+G  +N  + ++L  F +MK+S + PN +T + VL AC  +
Sbjct: 455 LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARI 513

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           G +  G       I  H L       G     ++D+  R G  ++   L +      DV 
Sbjct: 514 GALMRGKE-----IHAHALRTGVGFDGFLPNAILDMYVRCG--RKVPALNQFNSQKKDVT 566

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQ--PDHDGFHVLL 635
            W  LL    + G  ++   +  K++EL+  PD   F  LL
Sbjct: 567 AWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLL 607



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/515 (23%), Positives = 219/515 (42%), Gaps = 80/515 (15%)

Query: 29  NLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           N+    + L+ C          +I + +I  G  +D    + LI   T  +   ++S + 
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALI---TMYVKCGDISNAR 253

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            +F  +   +   +N M+  Y +     + + L+ +M   +V  D  T   +A A  L  
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +   G+ +H +V+K+ F  D+ +NN+LI MY+  G L  A  +F      D+VSW +++A
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 206 GYVNADNVEEAKFIYNKM------PER--------------------------------- 226
             V+     +A   Y  M      P+                                  
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS 433

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++I SNS+I ++ +   V  A  +F+ +  K++VSW++LI     N    EAL+ F  M 
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM- 492

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  + V ++SVLSACA +  +  G  +HA A++ G+     L NA++ MY  CG   
Sbjct: 493 KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKV 552

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A   F++    D+ +WN +++GY + G  + A  LFD M+E +                
Sbjct: 553 PALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE---------------- 595

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
                          I PDE T +S++ AC+    + +G ++ +    K  L  N     
Sbjct: 596 ---------------IHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYA 640

Query: 466 TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            ++D+  + G +D+A +           + W AL+
Sbjct: 641 CVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/701 (35%), Positives = 401/701 (57%), Gaps = 46/701 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y +  +P  A+ L++ M + ++     +Y  L    +LR            + 
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLA----SYNALISGLSLRRQTLPDAAAA--LA 104

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
              F   V    +L+  Y   G L+ A +LF + P  + VS+  +L G ++A  V EA+ 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARR 164

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++MP+R+++A  +M+  + + G + EA  LF EMPK+++VSW+A+IS Y QN     A
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLA 224

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
             LF  M +     +EV   ++L                                     
Sbjct: 225 RKLFEVMPER----NEVSWTAMLVG----------------------------------- 245

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y   G +  A +LF+A     + + N+M+ G+ + G V+ A+ +F+ M E+D  +WS MI
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMI 305

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             Y Q++   E LS F EM   G+RP+  +++S+++ C  L  LD G+ +HA + +    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           ++    + LI MY+K G +D A  VFH  E K +  WN++I G+A +GL +++L +F +M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + +G++P+ IT++G L AC + G V EG   FNSM     + P ++HY CMVDLLGR+G+
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           ++EA +LI++MP+ PD   WGAL+GAC+ H + E+ E   +KL+EL+P + G +VLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHI 545

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDE 697
           + S GRW+D  ++R  +  R + K PGCS IE +  +H F +GD   HP+   I  +L++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +   L   GY+ D   V  DID+E+K  +L  HSE+ A+A+GL+ I    PIR+MKNLR+
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A K I++   REIV+RD +RFHHFK G CSC D+W
Sbjct: 666 CGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 216/472 (45%), Gaps = 95/472 (20%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   F +++R Y++  +   AI L++ M   N    + +Y +L         V E + +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN----HVSYTVLLGGLLDAGRVNEARRL 165

Query: 154 HDHV-----------------------LKAGFDS----DVYVNNTLINMYAVCGDLSAAR 186
            D +                        +A FD     +V     +I+ YA  G+++ AR
Sbjct: 166 FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE 246
           KLF+  P  + VSW ++L GY+ A +VE+A  ++N MPE  + A N+M+V FG++G V  
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F++M ++D  +WSA+I  YEQNE   EAL  F  M+   V  +   V+S+L+ CA 
Sbjct: 286 AKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L V+  G  VHA  ++   +  +   +ALI MY  CG +  A+++F      D++ WNSM
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+G                               YAQH    + L +F +M+  G+ PD 
Sbjct: 406 ITG-------------------------------YAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T +  ++AC++   + +G+ I      N + +NS +                       
Sbjct: 435 ITYIGALTACSYTGKVKEGREIF-----NSMTVNSSI----------------------- 466

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
               G   ++ ++     +GL +++ ++   M    V P+ + +  ++GACR
Sbjct: 467 --RPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGACR 513



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 193/431 (44%), Gaps = 22/431 (5%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           N+ +A    A N+E A+  +  MP R   + N+++  + R      A  LF+ MP +DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 261 SWSALIS--CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           S++ALIS     +  + + A  L        V    V   S+L       ++     +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSV----VSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
              +     Y  L   L+      G +  A +LFD   + D+++W +M+SGY + G + +
Sbjct: 137 QMPERNHVSYTVLLGGLL----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           ARALFD M +++VVSW+ MISGYAQ+ + +    LF  M         A LV  I A  H
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQA-GH 251

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           +   D  +  +A         N+++       + + G VD A  VF    E+   +W+A+
Sbjct: 252 VE--DAAELFNAMPEHPVAACNAMMVG-----FGQRGMVDAAKTVFEKMRERDDGTWSAM 304

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I  +  N    ++L  F EM   GV PN  + + +L  C  + ++D G R  ++ +    
Sbjct: 305 IKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG-REVHAAMLRCS 363

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH--GDHEMGER 616
            + +      ++ +  + G L +A+ +  +     D+  W +++    +H  G+  +G  
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 617 VGRKLVELQPD 627
              +L  + PD
Sbjct: 423 HDMRLAGMSPD 433


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/806 (33%), Positives = 444/806 (55%), Gaps = 89/806 (11%)

Query: 40  CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL--LPFIEMSYSFKIFAFLESPNGF 97
           C       Q+ + ++++G     F +++LI     L  +P   ++     F  +++ + +
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLT-----FDQIQTKDVY 107

Query: 98  IFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +N+M+ AY +      A+ C  + +  + +  D+YT+P + +A     ++ +G+ +H  
Sbjct: 108 TWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG---NLDDGRKVHCL 164

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK GF+ DVY+  + I+ Y+  G +S A  LFD   + D+ +WN++++G+     V EA
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224

Query: 217 KFIYNKMP---------------------------------------ERNIIASNSMIVL 237
             ++++M                                        E ++   N++I +
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINM 284

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G +  A  +F +M  +D+VSW++L++ +EQN+    AL ++  M    V+ D + +
Sbjct: 285 YAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTL 344

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECY----INLQNALIHMYSSCGEITTAEKLFD 353
           VS+ S  A L    +  S+H    +    C+    I L NA+I MY+             
Sbjct: 345 VSLASVAAELGNFLSSRSIHGFVTR---RCWFLHDIALGNAIIDMYA------------- 388

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             K G ++ AR +F+ +  KDV+SW+++I+GY+Q+   +E + +
Sbjct: 389 ------------------KLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDV 430

Query: 414 FMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +  M+++ G  P++ T VS+++A + L AL QG   H  + KN L  +  + T L+DMY 
Sbjct: 431 YSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYG 490

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G + +AL +F+    +   SWNA+I    ++G   K++++F EM+  GV P+ ITFV 
Sbjct: 491 KCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVS 550

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC H GLVDEG   F  M + + + P+ KHYGCMVDL GRAG L++A   +++MP+ 
Sbjct: 551 LLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVR 610

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PDV+ WGALLGAC+ H + E+   V   L++++ ++ G++VLLSNI+A  G W+ V EVR
Sbjct: 611 PDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVR 670

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            +   RG+ K PG S IE +  I  F  G++THP+  EI + L  +  K+K  GY PD  
Sbjct: 671 SLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYN 730

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            V  D++ +EKE  L  HSE+LA+AFG+I+  P   ++I KNLR+C DCH A KFIS+  
Sbjct: 731 FVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKIT 790

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           +REI+VRD +RFHHFK G CSC D+W
Sbjct: 791 EREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 229/506 (45%), Gaps = 77/506 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           ++ C +     ++   ++  G   D + A+  I F +    F  +S +  +F  +   + 
Sbjct: 149 IRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSR---FGFVSLACNLFDNMMIRDI 205

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+  +       +A+ ++  M   +V +D+ T   L         +  G LIH +
Sbjct: 206 GTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVY 265

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G + D++V N LINMYA  G+L +A  +F++  V D+VSWNS+LA +        A
Sbjct: 266 AIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIA 325

Query: 217 KFIYNKM------PE----------------------------------RNIIASNSMIV 236
             +YNKM      P+                                   +I   N++I 
Sbjct: 326 LGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIID 385

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV-DEV 295
           ++ + G +  A ++F+ +P KD++SW++LI+ Y QN +  EA+ ++ +M  +   V ++ 
Sbjct: 386 MYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQG 445

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             VS+L+A + L  +K G   H   +K  +   I +   L+ MY  CG++  A  LF   
Sbjct: 446 TWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEV 505

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            +   +SWN++IS +                           + GY       + + LF 
Sbjct: 506 PHQSSVSWNAIISCH--------------------------GLHGYGL-----KAVKLFK 534

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKL 474
           EMQ  G++PD  T VS++SAC+H   +D+G+W    +++  G++ +      ++D++ + 
Sbjct: 535 EMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRA 594

Query: 475 GCVDNALEVFHGTEEK-GVSSWNALI 499
           G ++ A         +  VS W AL+
Sbjct: 595 GHLEKAFNFVKNMPVRPDVSVWGALL 620


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 401/701 (57%), Gaps = 46/701 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y +  +P  A+ L++ M + ++     +Y  L    +LR            + 
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLA----SYNALISGLSLRRQTLPDAAAA--LA 104

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
              F   V    +L+  Y   G L+ A +LF + P  + VS+  +L G ++A  V EA+ 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARR 164

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++MP+R+++A  +M+  + + G + EA  LF EMPK+++VSW+A+IS Y QN     A
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLA 224

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
             LF  M +     +EV   ++L                                     
Sbjct: 225 RKLFEVMPER----NEVSWTAMLVG----------------------------------- 245

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y   G +  A +LF+A     + + N+M+ G+ + G V+ A+ +F+ M E+D  +WS MI
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             Y Q++   E LS F EM   G+RP+  +++S+++ C  L  LD G+ +HA + +    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           ++    + LI MY+K G +D A  VFH  E K +  WN++I G+A +GL +++L +F +M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + +G++P+ IT++G L AC + G V EG   FNSM     + P ++HY CMVDLLGR+G+
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           ++EA +LI++MP+ PD   WGAL+GAC+ H + E+ E   +KL+EL+P + G +VLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHI 545

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDE 697
           + S GRW+D  ++R  +  R + K PGCS IE +  +H F +GD   HP+   I  +L++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +   L   GY+ D   V  DID+E+K  +L  HSE+ A+A+GL+ I    PIR+MKNLR+
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A K I++   REI++RD +RFHHFK G CSC D+W
Sbjct: 666 CGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 216/472 (45%), Gaps = 95/472 (20%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   F +++R Y++  +   AI L++ M   N    + +Y +L         V E + +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN----HVSYTVLLGGLLDAGRVNEARRL 165

Query: 154 HDHV-----------------------LKAGFDS----DVYVNNTLINMYAVCGDLSAAR 186
            D +                        +A FD     +V     +I+ YA  G+++ AR
Sbjct: 166 FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE 246
           KLF+  P  + VSW ++L GY+ A +VE+A  ++N MPE  + A N+M+V FG++G V  
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F++M ++D  +WSA+I  YEQNE   EAL  F  M+   V  +   V+S+L+ CA 
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L V+  G  VHA  ++   +  +   +ALI MY  CG +  A+++F      D++ WNSM
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+G                               YAQH    + L +F +M+  G+ PD 
Sbjct: 406 ITG-------------------------------YAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T +  ++AC++   + +G+ I      N + +NS +                       
Sbjct: 435 ITYIGALTACSYTGKVKEGREIF-----NSMTVNSSI----------------------- 466

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
               G   ++ ++     +GL +++ ++   M    V P+ + +  ++GACR
Sbjct: 467 --RPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGACR 513



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 130/301 (43%), Gaps = 35/301 (11%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NA I   +  G I  A   F+A       S+N++++GY +    + A  LF  M  +D+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 393 SWSTMISGYAQHDQ-------------FSETL----SLFMEMQHHGIRPDEATLVSVISA 435
           S++ +ISG +   Q             F  ++    SL      HG+  D   L   +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 436 CTHLVA-------LDQGKWIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHGT 487
             H+         LD G+   A    + +    ++  T ++  Y + G +  A  +F   
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
            ++ V SW A+I G+A NG  + + ++F  M +     NE+++  +L      G V++  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             FN+M  EH   P +     MV   G+ GM+  A+ + E M    D  TW A++ A ++
Sbjct: 257 ELFNAM-PEH---PVAACNAMMVG-FGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQ 310

Query: 608 H 608
           +
Sbjct: 311 N 311



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 120/287 (41%), Gaps = 39/287 (13%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+ I+   + G++E ARA F+AM  +   S++ +++GY ++      L LF  M    + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 424 ----------------PDEATLVSVISACTHLVALDQGKWIHAYIRKNGL---------- 457
                           PD A  ++ I     +V+      +  Y+R   L          
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTS--LLRGYVRHGLLADAIRLFQQM 138

Query: 458 -KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            + N +  T L+   +  G V+ A  +F    ++ V +W A++ G+   G   ++  +F 
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM K  V    +++  ++      G V+   + F  M      E N   +  M+    +A
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQA 249

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           G +++A EL  +MP  P VA   A++    + G  +  + V  K+ E
Sbjct: 250 GHVEDAAELFNAMPEHP-VAACNAMMVGFGQRGMVDAAKTVFEKMCE 295


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/757 (35%), Positives = 416/757 (54%), Gaps = 77/757 (10%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++ +F  +   + F +N ++  Y +     +A+ LY  ML   +  + YT+P + +  A 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              +  GK IH HV++ GF+SDV V N LI MY  CGD+S AR LFD+ P  D +SWN++
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAM 270

Query: 204 LAGYVNADNVEEAKFIYNKMPERNI---------IAS----------------------- 231
           ++GY       E   +++ M E ++         +AS                       
Sbjct: 271 ISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEF 330

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  NS+I ++   G + EA  +F  M  KD+VSW+A+I+    +++  +A+  +  
Sbjct: 331 GGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKM 390

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    ++ DE+ +VSVLSACA +  +  G  +H +A+K G+  ++ + N+LI MYS    
Sbjct: 391 MELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS---- 446

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      KC  V+ A  +F  +  K+VVSW+++I G   +
Sbjct: 447 ---------------------------KCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           ++  E L  F +M+   ++P+  TL+SV+SAC  + AL +GK IHA+  + G+  +  L 
Sbjct: 480 NRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLP 538

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             ++DMY++ G    AL  F+ +++K V++WN L+ G+A  G A  ++E+F +M +  + 
Sbjct: 539 NAILDMYVRCGRKVPALNQFN-SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIH 597

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+EITF+ +L AC   G+V EG  +FN M  ++ L PN KHY C+VD+LGRAG L +A +
Sbjct: 598 PDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYD 657

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            I+ MP+ PD A WGALL AC+ H + E+GE   +++ E      G+++LL N++A  G 
Sbjct: 658 FIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGN 717

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD V +VR +M  RG+   PGCS +E  G +H FL+GD +H Q  EI+ +LD    K+K 
Sbjct: 718 WDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKE 777

Query: 705 EGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            G+    L+ +F  + E     +F  HSE+ AIAFGLI  +P  PI + KNL +C+ CH 
Sbjct: 778 NGFG--NLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHN 835

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD--FW 798
             KFIS    REI VRD   +HHFK G CSC D  +W
Sbjct: 836 MVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 167/581 (28%), Positives = 262/581 (45%), Gaps = 84/581 (14%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N  +R    +   +QA+   + ML   + V+   Y  L +    R +  EG  +++ V  
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
           +     V + N L++M+   G+L  A  +F +    D+ SWN ++ GY  A   +EA  +
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 220 YNKM------P---------------------------------ERNIIASNSMIVLFGR 240
           Y++M      P                                 E ++   N++I ++ +
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G+++ A  LF +MPK+D +SW+A+IS Y +N    E L LF  M +  V  D + + +V
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
            SAC  L   + G  VH   VK      I++ N+LI MYSS G +  AE +F    + D+
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +SW +MI+  +                                H    + +  +  M+  
Sbjct: 366 VSWTAMIASLV-------------------------------SHKLPFKAVETYKMMELE 394

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           GI PDE TLVSV+SAC  +  LD G  +H    K GL  + I+  +LIDMY K  CVDNA
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           LEVF     K V SW +LI+G  +N  + ++L  F +MK+S + PN +T + VL AC  +
Sbjct: 455 LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARI 513

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           G +  G       I  H L       G     ++D+  R G  ++   L +      DV 
Sbjct: 514 GALMRGKE-----IHAHALRTGVGFDGFLPNAILDMYVRCG--RKVPALNQFNSQKKDVT 566

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQ--PDHDGFHVLL 635
            W  LL    + G  ++   +  K++EL+  PD   F  LL
Sbjct: 567 AWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLL 607



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 213/493 (43%), Gaps = 77/493 (15%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I + +I  G  +D    + LI   T  +   ++S +  +F  +   +   +N M+  Y 
Sbjct: 219 EIHAHVIRFGFESDVDVGNALI---TMYVKCGDISNARMLFDKMPKRDRISWNAMISGYF 275

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +     + + L+ +M   +V  D  T   +A A  L  +   G+ +H +V+K+ F  D+ 
Sbjct: 276 ENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDIS 335

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           +NN+LI MY+  G L  A  +F      D+VSW +++A  V+     +A   Y  M    
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEG 395

Query: 224 --PER---------------------------------NIIASNSMIVLFGRKGNVAEAC 248
             P+                                  ++I SNS+I ++ +   V  A 
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            +F+ +  K++VSW++LI     N    EAL+ F  M    +  + V ++SVLSACA + 
Sbjct: 456 EVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIG 514

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G  +HA A++ G+     L NA++ MY  CG    A   F++    D+ +WN +++
Sbjct: 515 ALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLT 573

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           GY + G  + A  LFD M+E +                               I PDE T
Sbjct: 574 GYAQQGQAKLAVELFDKMLELE-------------------------------IHPDEIT 602

Query: 429 LVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +S++ AC+    + +G ++ +    K  L  N      ++D+  + G +D+A +     
Sbjct: 603 FISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDM 662

Query: 488 E-EKGVSSWNALI 499
                 + W AL+
Sbjct: 663 PIRPDAAIWGALL 675


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/744 (35%), Positives = 413/744 (55%), Gaps = 82/744 (11%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL-SVFEGKLIHDHVL 158
           N ++  Y+        +  +  M+ +++  D  T+ +L  A+A+RL S+  G+ +H   L
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTF-ILVLATAVRLDSLALGQQVHCMAL 349

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G D  + V+N+LINMY     +  AR +F+     DL+SWNS++AG   +D   EA  
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409

Query: 219 IY----------------------NKMPE--------------RNIIA----SNSMIVLF 238
           ++                      + +PE               N +A    S ++I  +
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAY 469

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R   + EA  LF      DLV+W+A++S Y Q+    + L LF  M       D+  + 
Sbjct: 470 SRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLA 528

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           +VL  C  L  +  G  VHA A+K                               +G++L
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIK-------------------------------SGYDL 557

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           DL   + ++  Y+KCG +  A+  FD++   D V+W+T+ISG  ++ +    L +F +M+
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMR 617

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN----SILGTTLIDMYMKL 474
             G+ PDE T+ ++  A + L AL+QG+ IHA    N LK+N      +GT+L+DMY K 
Sbjct: 618 LMGVLPDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTSDPFVGTSLVDMYAKC 673

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +D+A  +F   E   +++WNA+++G A +G   ++L++F +M+  G+ P+++TF+GVL
Sbjct: 674 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVL 733

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLV E +++  SM +++ ++P  +HY C+ D LGRAG++KEAE LI+SM M   
Sbjct: 734 SACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEAS 793

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + +  LL AC+  GD E G+RV  KL+EL+P     +VLLSN++A+  +WD++   R M
Sbjct: 794 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 853

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M    V K PG S IE    IH F+  DR++PQ   I   + +M + +K EGY P+T   
Sbjct: 854 MKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFT 913

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+++EEKE  L+ HSEKLA+AFGL++  P  PIR++KNLR+C DCH A K+IS+ +DR
Sbjct: 914 LVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDR 973

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EIV+RD +RFH FK G CSC D+W
Sbjct: 974 EIVLRDANRFHRFKDGICSCGDYW 997



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 167/644 (25%), Positives = 292/644 (45%), Gaps = 94/644 (14%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQ------RNVPQQAICLYKLMLNNNVGVDNYTY 134
           ++Y+ ++F  +   +   +N+++ AY Q       NV ++A  L++++  + V     T 
Sbjct: 97  LTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENV-KEAFLLFRILRQDVVYTSRMTL 155

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
             + +       V   +  H +  K G D D +V   L+N+Y   G +   R LF+E P 
Sbjct: 156 SPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY 215

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR-KGNVAEACRLFKE 253
            D+V WN +L  Y+     EEA  + +      +  +   + L  R  G+ +EA ++   
Sbjct: 216 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSF 275

Query: 254 MPKKD------LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
               D      ++S + ++S Y     Y   L  FM+M++  +  D+V  + VL+    L
Sbjct: 276 ENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRL 335

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G  VH +A+K+G++  + + N+LI+MY    +I  A  +F+     DLISWNS+I
Sbjct: 336 DSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVI 395

Query: 368 SG----------------YLKCG---------SVEKA----------------------- 379
           +G                 L+CG         SV KA                       
Sbjct: 396 AGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNN 455

Query: 380 -------RALFDA------MIEKDV---------VSWSTMISGYAQHDQFSETLSLFMEM 417
                   AL DA      M E +V         V+W+ M+SGY Q     +TL LF  M
Sbjct: 456 VADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALM 515

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G R D+ TL +V+  C  L A++QGK +HAY  K+G  ++  + + ++DMY+K G +
Sbjct: 516 HKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 575

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             A   F         +W  LI G   NG  +++L +FS+M+  GV P+E T   +  A 
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKAS 635

Query: 538 RHMGLVDEGHR-HFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPD 594
             +  +++G + H N++    +L   S  +    +VD+  + G + +A  L + + M  +
Sbjct: 636 SCLTALEQGRQIHANAL----KLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-N 690

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
           +  W A+L    +HG+ +   ++ +++  L  +PD   F  +LS
Sbjct: 691 ITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLS 734



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 263/570 (46%), Gaps = 102/570 (17%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK  H  +L    + + ++ N LI+MY+ CG L+ AR++FD+ P  DLVSWNSILA Y  
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 210 A-----DNVEEAKFIYNKMPERNIIASNSMIV---------------------------- 236
           +     +NV+EA F+  ++  ++++ ++ M +                            
Sbjct: 125 SSEGVVENVKEA-FLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183

Query: 237 ------------LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                       ++ + G V E   LF+EMP +D+V W+ ++  Y +    EEA+ L   
Sbjct: 184 DGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 243

Query: 285 MIDHRVMVDEVVV------------------------VSVLSACANLTVVKAGTSVHALA 320
                +  +E+ +                         S +S   +   + +G  +HA  
Sbjct: 244 FHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGY-LHAGQ 302

Query: 321 VKIGIECYINLQNALIHMYSSCGEIT------TAEKL-------------FDAGHNLDLI 361
               ++C++++  + +     C ++T      TA +L                G +L L 
Sbjct: 303 YSALLKCFMDMVESDLE----CDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLT 358

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
             NS+I+ Y K   +  AR +F+ M E+D++SW+++I+G AQ D   E + LFM++   G
Sbjct: 359 VSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 422 IRPDEATLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           ++PD  T+ SV+ A + L   L   K IH +  K     +S + T LID Y +  C+  A
Sbjct: 419 LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEA 478

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            EV  G     + +WNA++ G+  +    K+LE+F+ M K G   ++ T   VL  C  +
Sbjct: 479 -EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFL 537

Query: 541 GLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
             +++G + H  ++   + L+        ++D+  + G +  A+   +S+P+  DVA W 
Sbjct: 538 FAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVA-WT 594

Query: 600 ALLGACKKHGDHEMGERV--GRKLVELQPD 627
            L+  C ++G+ E    V    +L+ + PD
Sbjct: 595 TLISGCIENGEEERALHVFSQMRLMGVLPD 624



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 188/425 (44%), Gaps = 54/425 (12%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF---IFNTMMR 104
           QI    I T  +AD+F        ST L+     +   K    L   N F    +N MM 
Sbjct: 445 QIHVHAIKTNNVADSFV-------STALIDAYSRNRCMKEAEVLFGRNNFDLVAWNAMMS 497

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y Q +   + + L+ LM       D++T   + +      ++ +GK +H + +K+G+D 
Sbjct: 498 GYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL 557

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM- 223
           D++V++ +++MY  CGD+SAA+  FD  PV D V+W ++++G +     E A  ++++M 
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMR 617

Query: 224 -----PERNIIAS---------------------------------NSMIVLFGRKGNVA 245
                P+   IA+                                  S++ ++ + G++ 
Sbjct: 618 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSID 677

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +A  LFK +   ++ +W+A++    Q+   +EAL LF  M    +  D+V  + VLSAC+
Sbjct: 678 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACS 737

Query: 306 NLTVV-KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISW 363
           +  +V +A   + ++    GI+  I   + L       G +  AE L D+         +
Sbjct: 738 HSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMY 797

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHH 420
            ++++     G  E  + +   ++E + +  S  +   + YA   ++ E       M+ H
Sbjct: 798 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 857

Query: 421 GIRPD 425
            ++ D
Sbjct: 858 KVKKD 862


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 335/542 (61%), Gaps = 31/542 (5%)

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMN-MIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           D   +S +I  Y ++   +   + + N M+ + +  ++     VL ACA L  +  G +V
Sbjct: 72  DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H   VK G +  I +QN ++HMY  C                               G +
Sbjct: 132 HGSLVKFGFDDDIFVQNTMVHMYCCCS------------------------------GGM 161

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           E AR LFD M + D V+W+ MI GYA+  Q +  + LF +MQ  G+ PD+ T+VSV+SAC
Sbjct: 162 EFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSAC 221

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           T L AL+ GKWI +YI K  +     L   L+DM+ K G VD AL +F    ++ + SW 
Sbjct: 222 TDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWT 281

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           ++I+G AM+G   +++ +F EMK SG+ P +I F+G+L AC H GLV+ G ++F+ M ++
Sbjct: 282 SVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQ 341

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
             + P  +HYGCMVDLL RAG++ EA E +E MP+ P+   W  L+ AC+ HG+ ++GE 
Sbjct: 342 FGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGES 401

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
           + ++L+  +P H+  +VLLSNI+     W+   ++R  M ++G+ K+PG +MIE +  IH
Sbjct: 402 ISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIH 461

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           EF+ GDR+H Q NEI  M++EM +++K  GYAP T EV  DID+E+KE  L RHSEKLAI
Sbjct: 462 EFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAI 521

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AF L+   P +PIRI KNLR+C DCH+A+KFIS+ ++REIV+RDR RFHHF+ G CSC D
Sbjct: 522 AFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGD 581

Query: 797 FW 798
           FW
Sbjct: 582 FW 583



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 213/457 (46%), Gaps = 62/457 (13%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL-- 75
           +N + + +P +++      LQ C +  +  Q+ + +I  G   +    ++    S++L  
Sbjct: 1   MNHRAVEQPCLDI------LQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDA 54

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ-AICLYKLMLNNNVGVDNYTY 134
           +P+  MS  F +       + F+F+T++RAY + +  +  AI  Y LML   +  + Y +
Sbjct: 55  IPY-AMSLVFSV-EDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAF 112

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC-GDLSAARKLFDESP 193
           P + +A A    +  GK +H  ++K GFD D++V NT+++MY  C G +  ARKLFDE P
Sbjct: 113 PFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMP 172

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE---------------------- 225
            LD V+W +++ GY        A  ++ KM      P+                      
Sbjct: 173 KLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKW 232

Query: 226 -----------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                      + +  SN+++ +F + G+V +A  LF+ M K+ +VSW+++I     +  
Sbjct: 233 IESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGR 292

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVKIGIECYINLQN 333
             EA+ LF  M    ++ +++  + +LSAC++  +V+ G    + +  + GI   I    
Sbjct: 293 GLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYG 352

Query: 334 ALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMIS-----GYLKCG-SVEKARALFDAM 386
            ++ + S  G +T A +  +      + I W ++IS     G LK G S+ K     + M
Sbjct: 353 CMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPM 412

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            E + V  S +   Y +   + +   + + M   GI+
Sbjct: 413 HESNYVLLSNI---YGKMLDWEKKSKIRVAMGKKGIQ 446



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 33/258 (12%)

Query: 227 NIIASNSMIVLFGR-KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           +I   N+M+ ++    G +  A +LF EMPK D V+W+A+I  Y +      A+ LF  M
Sbjct: 143 DIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM 202

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               V  D+V +VSVLSAC +L  ++ G  + +   K  +   + L NAL+ M++ CG++
Sbjct: 203 QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDV 262

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  LF       ++SW S                               +I G A H 
Sbjct: 263 DKALGLFRNMSKRTIVSWTS-------------------------------VIVGLAMHG 291

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILG 464
           +  E +SLF EM+  G+ P++   + ++SAC+H   +++G+ +     R+ G+       
Sbjct: 292 RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHY 351

Query: 465 TTLIDMYMKLGCVDNALE 482
             ++D+  + G V  ALE
Sbjct: 352 GCMVDLLSRAGLVTEALE 369



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 22/210 (10%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           R  E   + ++ AC  L  L Q   +H +I K G + N ++ T        L  +  A+ 
Sbjct: 4   RAVEQPCLDILQACNTLPKLAQ---LHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMS 60

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKS------LEMFSEMKKSGVTPNEITFVGVLGA 536
           +    E+  V  ++A +    +   A+ S      +  ++ M   G++PN+  F  VL A
Sbjct: 61  LVFSVEDARV--YDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKA 118

Query: 537 CRHMGLVDEGHRHFNSMIQ-----EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           C  +  ++ G     S+++     +  ++    H  C       +G ++ A +L + MP 
Sbjct: 119 CAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCC-----SGGMEFARKLFDEMP- 172

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKL 621
             D  TW A++G   + G       + RK+
Sbjct: 173 KLDPVTWTAMIGGYARLGQSAGAVGLFRKM 202


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/685 (37%), Positives = 385/685 (56%), Gaps = 71/685 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  ++ +G     ++    +N     G++  ARK+FDE P   +  WN+I+ GY + + 
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
             +A  +Y++M                                        E ++   N 
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ + G V +A  +F+ +  +++VSW+++IS Y QN +  EAL +F  M    V  D
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + +VSVL A  ++  ++ G S+H   VK+G+E   +L                      
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDL---------------------- 307

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                 LIS  +M   Y KCG V  AR+ FD M   +V+ W+ MISGYA++   +E + L
Sbjct: 308 ------LISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGL 358

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F EM    IR D  T+ S I AC  + +LD  KW+  YI K   + +  + T LIDM+ K
Sbjct: 359 FQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAK 418

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G VD A EVF  T +K V  W+A+I+G+ ++G    ++++F  MK++GV PN++TFVG+
Sbjct: 419 CGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGL 478

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLV+EG   F+SM + + +E   +HY C+VDLLGR+G L EA + I +MP+ P
Sbjct: 479 LTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEP 537

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
            V+ WGALLGACK +    +GE    +L  L P + G +V LSN++AS   WD V +VR 
Sbjct: 538 GVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRI 597

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M  +G+ K  G S+IE NG +  F  GD++HP+  EI   L+ + ++LK  G+ P    
Sbjct: 598 LMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIES 657

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D++QEEKE TL  HSE+LAIA+GLI+ +P   +RI KNLR C +CH+A K IS+  +
Sbjct: 658 VLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVN 717

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REIVVRD +RFHHFK+G CSC D+W
Sbjct: 718 REIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 234/538 (43%), Gaps = 83/538 (15%)

Query: 2   TLATKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIAD 61
           +L   L H      S  +    F   ++ S+ + HL          QI +Q++++GL+  
Sbjct: 52  SLPLPLDHSDYIPYSGFDFDSFFSSLLDHSVHKRHLN---------QIHAQLVVSGLVES 102

Query: 62  TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKL 121
            F  ++ +  S ++    E+ Y+ K+F     P+ F++N ++R Y   N    AI +Y  
Sbjct: 103 GFLVTKFVNASWNIG---EIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSR 159

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           M  + V  D +T P + +A +    +  GK +H  + + GF+SDV+V N L+ +YA CG 
Sbjct: 160 MQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGR 219

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN--------- 232
           +  AR +F+     ++VSW S+++GY       EA  I+ +M +RN+             
Sbjct: 220 VEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279

Query: 233 ------------------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
                                         S+  ++ + G V  A   F +M   +++ W
Sbjct: 280 YTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMW 339

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +A+IS Y +N    EA+ LF  MI   +  D + V S + ACA +  +     +     K
Sbjct: 340 NAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINK 399

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
                 + +  ALI M++ CG +  A ++FD   + D++ W++MI G             
Sbjct: 400 TEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVG------------- 446

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                             Y  H +  + + LF  M+  G+ P++ T V +++AC H   +
Sbjct: 447 ------------------YGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLV 488

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           ++G  +   ++  G++        ++D+  + G ++ A +       E GVS W AL+
Sbjct: 489 EEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S++    H   L+Q   IHA +  +GL  +  L T  ++    +G +  A +VF    E 
Sbjct: 76  SLLDHSVHKRHLNQ---IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEP 132

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V  WNA+I G++ +     ++EM+S M+ SGV P+  T   VL AC  + +++ G R  
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR-V 191

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  I     E +      +V L  + G +++A  + E +    ++ +W +++    ++G
Sbjct: 192 HGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLD-DRNIVSWTSMISGYGQNG 249


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 401/701 (57%), Gaps = 46/701 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y +  +P  A+ L++ M + ++     +Y  L    +LR            + 
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLA----SYNALISGLSLRRQTLPDAAAA--LA 104

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
              F   V    +L+  Y   G L+ A +LF + P  + VS+  +L G ++A  V EA+ 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARR 164

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++MP+R+++A  +M+  + + G + EA  LF EMPK+++VSW+A+IS Y QN     A
Sbjct: 165 LFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLA 224

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
             LF  M +     +EV   ++L                                     
Sbjct: 225 RKLFEVMPER----NEVSWTAMLVG----------------------------------- 245

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y   G +  A +LF+A     + + N+M+ G+ + G V+ A+ +F+ M E+D  +WS MI
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMI 305

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             Y Q++   E LS F EM   G+RP+  +++S+++ C  L  LD G+ +HA + +    
Sbjct: 306 KAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFD 365

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           ++    + LI MY+K G +D A  VFH  E K +  WN++I G+A +GL +++L +F +M
Sbjct: 366 MDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM 425

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + +G++P+ IT++G L AC + G V EG   FNSM     + P ++HY CMVDLLGR+G+
Sbjct: 426 RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGL 485

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           ++EA +LI++MP+ PD   WGAL+GAC+ H + E+ E   +KL+EL+P + G +VLLS+I
Sbjct: 486 VEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHI 545

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDE 697
           + S GRW+D  ++R  +  R + K PGCS IE +  +H F +GD   HP+   I  +L++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEK 605

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +   L   GY+ D   V  DID+E+K  +L  HSE+ A+A+GL+ I    PIR+MKNLR+
Sbjct: 606 LDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRV 665

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A K I++   REI++RD +RFHHFK G CSC D+W
Sbjct: 666 CGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 216/472 (45%), Gaps = 95/472 (20%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   F +++R Y++  +   AI L++ M   N    + +Y +L         V E + +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERN----HVSYTVLLGGLLDAGRVNEARRL 165

Query: 154 HDHV-----------------------LKAGFDS----DVYVNNTLINMYAVCGDLSAAR 186
            D +                        +A FD     +V     +I+ YA  G+++ AR
Sbjct: 166 FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE 246
           KLF+  P  + VSW ++L GY+ A +VE+A  ++N MPE  + A N+M+V FG++G V  
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F++M ++D  +WSA+I  YEQNE   EAL  F  M+   V  +   V+S+L+ CA 
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L V+  G  VHA  ++   +  +   +ALI MY  CG +  A+++F      D++ WNSM
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+G                               YAQH    + L +F +M+  G+ PD 
Sbjct: 406 ITG-------------------------------YAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T +  ++AC++   + +G+ I      N + +NS +                       
Sbjct: 435 ITYIGALTACSYTGKVKEGREIF-----NSMTVNSSI----------------------- 466

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
               G   ++ ++     +GL +++ ++   M    V P+ + +  ++GACR
Sbjct: 467 --RPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGACR 513



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 35/301 (11%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NA I   +  G I  A   F+A       S+N++++GY +    + A  LF  M  +D+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 393 SWSTMISGYAQHDQ-------------FSETL----SLFMEMQHHGIRPDEATLVSVISA 435
           S++ +ISG +   Q             F  ++    SL      HG+  D   L   +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 436 CTHLV-------ALDQGKWIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHGT 487
             H+         LD G+   A    + +    ++  T ++  Y + G +  A  +F   
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
            ++ V SW A+I G+A NG  + + ++F  M +     NE+++  +L      G V++  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             FN+M +      N+   G      G+ GM+  A+ + E M    D  TW A++ A ++
Sbjct: 257 ELFNAMPEHPVAACNAMMVG-----FGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQ 310

Query: 608 H 608
           +
Sbjct: 311 N 311



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 120/287 (41%), Gaps = 39/287 (13%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+ I+   + G++E ARA F+AM  +   S++ +++GY ++      L LF  M    + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 424 ----------------PDEATLVSVISACTHLVALDQGKWIHAYIRKNGL---------- 457
                           PD A  ++ I     +V+      +  Y+R   L          
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTS--LLRGYVRHGLLADAIRLFQQM 138

Query: 458 -KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            + N +  T L+   +  G V+ A  +F    ++ V +W A++ G+   G   ++  +F 
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM K  V    +++  ++      G V+   + F  M      E N   +  M+    +A
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVSWTAMLVGYIQA 249

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           G +++A EL  +MP  P VA   A++    + G  +  + V  K+ E
Sbjct: 250 GHVEDAAELFNAMPEHP-VAACNAMMVGFGQRGMVDAAKTVFEKMCE 295


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/695 (35%), Positives = 394/695 (56%), Gaps = 55/695 (7%)

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           ++ F S   +    I+ +A  G +  AR +FD+     + SWN+I+AGY +     EA+ 
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           +++KMPERN I+ N ++  + + G ++EA ++F +MP++++VSW++++  Y Q  + +EA
Sbjct: 69  LFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA 128

Query: 279 LVLFMNMIDHRVM--------------VDEVV----VVSVLSACANLTVVKAGTSVHALA 320
            +LF  M +  V+              VDE      ++ V    A+  ++    S   L+
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLS 188

Query: 321 VKIGIECYINLQN-----ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG- 374
               I   +  +N     ++I  Y+   ++  A KLF+   + + ++W +M+ GY + G 
Sbjct: 189 EAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGR 248

Query: 375 ------------------------------SVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                          V KAR +FD M EKD  +WS +I  Y + 
Sbjct: 249 INEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERK 308

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
               E L+LF  MQ  G+RP+  +++S++S C  L +LD G+ +H+ + ++   ++  + 
Sbjct: 309 GFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVS 368

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           + LI MY+K G +     VF     K +  WN++I G+A +G  +K+LE+F EM  SG  
Sbjct: 369 SVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAA 428

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+EITF+GVL AC + G V EG   F SM  +++++  ++HY CMVDLLGRAG L EA  
Sbjct: 429 PDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMN 488

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LIE+MP+  D   WGALL AC+ H + ++ E   +KL++L+P   G ++LLSN++AS+ R
Sbjct: 489 LIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSR 548

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL-AGDRTHPQINEIDNMLDEMAKKLK 703
           W DV E+R  M  R V K PGCS IE +  +H F   G  +HP+   I   L+++   L+
Sbjct: 549 WKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLR 608

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY PD   V  D+D+E+K  +L  HSEK+A+A+GL+ +    PIR+MKNLR+C DCH+
Sbjct: 609 EAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHS 668

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           A K I++   REI++RD +RFHHFK G CSC DFW
Sbjct: 669 AIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 179/403 (44%), Gaps = 84/403 (20%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           +S + K+F  +   N   + +M+R Y+Q  +  +A  L+  M   NV             
Sbjct: 94  ISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV------------- 140

Query: 141 SALRLSVFEGKLIHDHVLKAG---FD----SDVYVNNTLINMYAVCGDLSAARKLFDESP 193
             +  +V  G LI D  +      FD     DV  +  +I      G LS AR++FDE P
Sbjct: 141 --VSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP 198

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
             ++V+W S+++GY   + V+ A+ ++  MP++N +   +M+  + R G + EA  LFK 
Sbjct: 199 QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKA 258

Query: 254 MP-------------------------------KKDLVSWSALISCYEQNEMYEEALVLF 282
           MP                               +KD  +WSALI  YE+     EAL LF
Sbjct: 259 MPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALF 318

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M    V  +   ++S+LS C +L  +  G  VH+  V+   +  I + + LI MY  C
Sbjct: 319 SLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKC 378

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G++ T +++FD   + D++ WNS+I+GY + G  EKA                       
Sbjct: 379 GDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA----------------------- 415

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                   L +F EM   G  PDE T + V+SAC +   + +G
Sbjct: 416 --------LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEG 450



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++  +   ++ +++ Y ++    +A+ L+ LM    V  +  +   +        S
Sbjct: 286 VFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLAS 345

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ +H  ++++ FD D+YV++ LI MY  CGDL   +++FD     D+V WNSI+AG
Sbjct: 346 LDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAG 405

Query: 207 YVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           Y      E+A  ++++M      P+   I    ++   G  G V E   +F+ M  K  V
Sbjct: 406 YAQHGFGEKALEVFHEMFSSGAAPDE--ITFIGVLSACGYTGKVKEGLEIFESMKSKYQV 463

Query: 261 S-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
                 ++ ++    +     EA+ L  NM    V  D +V  ++LSAC
Sbjct: 464 DQKTEHYACMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGALLSAC 509


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/705 (36%), Positives = 388/705 (55%), Gaps = 73/705 (10%)

Query: 136 LLAQASALRLSVFEGKLIHDHV-LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           +L QA   R  +  G+ +H+ V     F +D  +N  +I MY++CG  S +R +FD+   
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 169

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM-------PER--------------------- 226
            +L  WN+I++ Y   +  E+A  I++++       P+                      
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 227 ------------NIIASNSMIVLFGRKGNVAEAC-RLFKEMPKKDLVSWSALISCYEQNE 273
                       ++   N++I ++G+ G V EA  R+F  M  K + SW+AL+  Y QN 
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
              +AL L++ M D  +  D   + S+L AC+ +  +  G  +H  A++ G+        
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA------- 342

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
                                   +D     S++S Y+ CG    A+ LFD M  + +VS
Sbjct: 343 ------------------------VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS 378

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI+GY+Q+    E ++LF +M   GI+P E  ++ V  AC+ L AL  GK +H +  
Sbjct: 379 WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFAL 438

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K  L  +  + +++IDMY K GC+  +  +F    EK V+SWN +I G+ ++G   ++LE
Sbjct: 439 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALE 498

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F +M + G+ P++ TF G+L AC H GLV++G  +FN M+  H +EP  +HY C+VD+L
Sbjct: 499 LFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDML 558

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG + +A  LIE MP  PD   W +LL +C+ HG+  +GE+V  KL+EL+P+    +V
Sbjct: 559 GRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYV 618

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           L+SN+ A  G+WDDV  VRG M   G+ K  GCS IE  G +H FL GD   P++ E+  
Sbjct: 619 LISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRE 678

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
               +  K+   GY PDT  V  D+++E+K   L  HSEKLAI+FGL+  +   P+R+ K
Sbjct: 679 TWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYK 738

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLRIC DCH AAKFIS+  +R+IVVRD  RFHHF+ G CSC D+W
Sbjct: 739 NLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 220/486 (45%), Gaps = 81/486 (16%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQA 140
           S S  +F  L   N F +N ++ AY +  + + A+ ++  +++      DN+T P + +A
Sbjct: 158 SDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKA 217

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL-SAARKLFDESPVLDLVS 199
            A  L +  G++IH    K    SDV+V N LI MY  CG +  A +++FD      + S
Sbjct: 218 CAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSS 277

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE---------------------------------- 225
           WN++L GY    +  +A  +Y +M +                                  
Sbjct: 278 WNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFAL 337

Query: 226 RNIIASN-----SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
           RN +A +     S++ L+   G    A  LF  M  + LVSW+ +I+ Y QN + +EA+ 
Sbjct: 338 RNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAIN 397

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF  M+   +   E+ ++ V  AC+ L+ ++ G  +H  A+K  +   I + +++I MY+
Sbjct: 398 LFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYA 457

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             G I  ++++FD     D+ SWN +I+G                               
Sbjct: 458 KGGCIGLSQRIFDRLREKDVASWNVIIAG------------------------------- 486

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKI 459
           Y  H +  E L LF +M   G++PD+ T   ++ AC+H   ++ G ++ +  +  + ++ 
Sbjct: 487 YGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEP 546

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG-------LADKS 511
                T ++DM  + G +D+AL +         S  W++L+    ++G       +A+K 
Sbjct: 547 KLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKL 606

Query: 512 LEMFSE 517
           LE+  E
Sbjct: 607 LELEPE 612



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 156/352 (44%), Gaps = 43/352 (12%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           L++D F  + LI         +E +   ++F  +++     +N ++  Y Q + P++A+ 
Sbjct: 239 LVSDVFVGNALIAMYGKC-GLVEEAVK-RVFDLMDTKTVSSWNALLCGYAQNSDPRKALD 296

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           LY  M ++ +  D +T   L  A +   S+  G+ IH   L+ G   D ++  +L+++Y 
Sbjct: 297 LYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYI 356

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE------------ 225
            CG   AA+ LFD      LVSWN ++AGY      +EA  ++ +M              
Sbjct: 357 CCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMC 416

Query: 226 ---------------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                       +I  S+S+I ++ + G +  + R+F  + +KD
Sbjct: 417 VCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD 476

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           + SW+ +I+ Y  +   +EAL LF  M+   +  D+     +L AC++  +V+ G     
Sbjct: 477 VASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFN 536

Query: 319 LAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMIS 368
             + +  IE  +     ++ M    G I  A +L +    + D   W+S++S
Sbjct: 537 QMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLS 588


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/762 (35%), Positives = 407/762 (53%), Gaps = 75/762 (9%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F ++  ++ +F  +   + F +N ++  Y +     +A+ LY  ML   +  D YT+P +
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +       +  G+ +H HV++ GF+SDV V N LI MY  CGD+ +AR +FD  P  D 
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPE-------------------------------- 225
           +SWN++++GY   D   E   ++  M E                                
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321

Query: 226 -------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                    +  +NS+I +    G   EA  +F +M  KDLVSW+A+IS YE+N + E+A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           +  +  M    V+ DE+ + SVLSACA L ++  G  +H  A + G+  Y+ + N+LI M
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           YS                               KC  ++KA  +F  +  K+V+SW+++I
Sbjct: 442 YS-------------------------------KCRCIDKALEVFHRIPNKNVISWTSII 470

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            G   + +  E L  F +M    ++P+  TLVSV+SAC  + AL  GK IHA+  + GL 
Sbjct: 471 LGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  L   L+DMY++ G ++ A   F+  E K V+SWN L+ G+A  G    ++E+F +M
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +S V P+EITF  +L AC   G+V +G  +F SM  +  + PN KHY  +VDLLGRAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L++A E I+ MP+ PD A WGALL AC+ + + E+GE   + + E+     G+++LL N+
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A  G+WD+V  VR +M    +   PGCS +E  G +H FL GD  HPQI EI+ +L+  
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            +K++  G +        DID  + E     HSE+LAIAFGLI   P  PI + KNL +C
Sbjct: 769 YEKMEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMC 827

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD--FW 798
            +CH   KFIS+   R I VRD  +FHHFK G CSC D  +W
Sbjct: 828 ENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 175/589 (29%), Positives = 270/589 (45%), Gaps = 89/589 (15%)

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           ++PN  I    ++  +++     A+     M    V V+  TY  L +    + +  EG 
Sbjct: 60  QNPNSLILELCLKGDLEK-----ALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGS 114

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H +V K      V + N L++M+   GDL  A  +F +    DL SWN ++ GY  A 
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 212 NVEEAKFIYNKM------P---------------------------------ERNIIASN 232
             +EA  +Y++M      P                                 E ++   N
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ + G++  A  +F  MP++D +SW+A+IS Y +N++  E L LF  M +  V  
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D + + SV+SAC  L   + G  VH   +K G    +++ N+LI M+SS G    AE +F
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 DL+SW +MISGY K G  EKA                             ET +
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKA----------------------------VETYT 386

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +   M+H G+ PDE T+ SV+SAC  L  LD+G  +H +  + GL    I+  +LIDMY 
Sbjct: 387 I---MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYS 443

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K  C+D ALEVFH    K V SW ++I+G  +N  + ++L  F +M  S + PN +T V 
Sbjct: 444 KCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVS 502

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEELIES 588
           VL AC  +G +  G       I  H L       G     ++D+  R G ++ A     S
Sbjct: 503 VLSACARIGALSCGKE-----IHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS 557

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
                DVA+W  LL    + G   +   +  K++E  + PD   F  LL
Sbjct: 558 --CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 226/483 (46%), Gaps = 48/483 (9%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+++ +F R G++ EA  +F +M ++DL SW+ L+  Y +   ++EAL L+  M+   + 
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D      VL  C  L  +  G  VH   ++ G E  +++ NALI MY  CG+I +A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     D ISWN+MISGY                                ++D   E L
Sbjct: 253 FDRMPRRDRISWNAMISGYF-------------------------------ENDVCLEGL 281

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF  M+   + PD  T+ SVISAC  L     G+ +H Y+ K G      +  +LI M+
Sbjct: 282 RLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
             +GC D A  VF   E K + SW A+I G+  NGL +K++E ++ M+  GV P+EIT  
Sbjct: 342 SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIA 401

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY----GCMVDLLGRAGMLKEAEELIE 587
            VL AC  +GL+D+G      M+ E         Y      ++D+  +   + +A E+  
Sbjct: 402 SVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 588 SMPMSPDVATWGA-LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            +P + +V +W + +LG    +   E      + ++ L+P+      +LS   A  G   
Sbjct: 457 RIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC-ARIGALS 514

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK-KLKLE 705
              E+    +R G+    G      N ++  ++   R  P  N+ ++   ++A   + L 
Sbjct: 515 CGKEIHAHALRTGL----GFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLT 570

Query: 706 GYA 708
           GYA
Sbjct: 571 GYA 573



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 5/247 (2%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ   +  +E T ++++  C    A  +G  +H+Y+ K   ++   LG  L+ M+++ G 
Sbjct: 85  MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD 144

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A  VF    E+ + SWN L+ G+A  G  D++L ++  M   G+ P+  TF  VL  
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRT 204

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +  +  G R  +  +  +  E +      ++ +  + G +  A  + + MP   D  
Sbjct: 205 CGGLPDLARG-REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR-DRI 262

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL--EVRGM 654
           +W A++    ++     G R+   + E   D D    + S I A +   D+ L  EV G 
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPD-LMTMTSVISACEALGDERLGREVHGY 321

Query: 655 MVRRGVV 661
           +++ G V
Sbjct: 322 VIKTGFV 328


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/657 (40%), Positives = 377/657 (57%), Gaps = 55/657 (8%)

Query: 164 SDVYVNNTLINMYAVCGD-------LSAARKLF---DESPVLDLVSWNSILAGYVNADNV 213
           + VY  N++I  +A  GD        S+ RKL    + S     +   S L        +
Sbjct: 49  TSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQI 108

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            +  F++    +  I  ++++I ++ + G + +A +LF E+P++++VSW+++IS Y QNE
Sbjct: 109 HQQAFVFGYGSD--IFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNE 166

Query: 274 MYEEALVLFMN--MIDHR---------VMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
              EA+ LF    ++D           V VD V++  V+SACA + V      VH LAVK
Sbjct: 167 RAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVK 226

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G E                G +     L DA               Y KCG +  +R +
Sbjct: 227 KGFE----------------GCLAVGNTLMDA---------------YAKCGEISVSRKV 255

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVA 441
           FD M E DV SW+++I+ YAQ+    E  SLF +M   G +R +  TL +V+ AC H  A
Sbjct: 256 FDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGA 315

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L  GK IH  + K  L+ N ++GT+++DMY K G V+ A + F   + K V SW  ++ G
Sbjct: 316 LQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAG 375

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           + M+G   +++++F EM + G+ PN ITFV VL AC H GL+ EG   FN M  E  +EP
Sbjct: 376 YGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEP 435

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HY CMVDLLGRAG LKEA  LI+ M + PD   WG+LLGAC+ H + E+GE   RKL
Sbjct: 436 GIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKL 495

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            +L P + G++VLLSNI+A  GRWDDV  +R +M   G++K PG S++E  G +H FL G
Sbjct: 496 FKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVG 555

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D+ HPQ  +I   LDE+  KL+  GY P+   V +D+D EEK   L  HSEKLA+AFG++
Sbjct: 556 DKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIM 615

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              P + I+I+KNLRIC DCH A K IS+  +REIV+RD  RFHHFK G CSC D+W
Sbjct: 616 NSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/548 (22%), Positives = 232/548 (42%), Gaps = 119/548 (21%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  + + +N+++  + +     QA+  +  M   ++  +  T+P   ++ +    +  
Sbjct: 45  YVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCA 104

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK IH      G+ SD++V + LI+MY+ CG L+ ARKLFDE P  ++VSW S+++GYV 
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 210 ADNVEEAKFIY------------------------------------------------- 220
            +   EA F++                                                 
Sbjct: 165 NERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLA 224

Query: 221 -NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
             K  E  +   N+++  + + G ++ + ++F  M + D+ SW++LI+ Y QN +  EA 
Sbjct: 225 VKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAF 284

Query: 280 VLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
            LF +M+    V  + V + +VL ACA+   ++ G  +H   VK+ +E  + +  +++ M
Sbjct: 285 SLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDM 344

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y  CG +  A K FD     ++ SW  M+                               
Sbjct: 345 YCKCGRVEMARKAFDRLKRKNVKSWTVMV------------------------------- 373

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           +GY  H    E + +F EM   GI+P+  T VSV++AC+H   L +G W           
Sbjct: 374 AGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEG-W----------- 421

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                       + K+ C  +         E G+  ++ ++      G   ++  +  EM
Sbjct: 422 ----------HWFNKMKCEFDV--------EPGIEHYSCMVDLLGRAGYLKEAYGLIQEM 463

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG 577
           K   V P+ I +  +LGACR    V+ G      +    +L+P N  +Y  + ++   AG
Sbjct: 464 K---VKPDFIVWGSLLGACRIHKNVELGEISARKLF---KLDPSNCGYYVLLSNIYADAG 517

Query: 578 MLKEAEEL 585
              + E +
Sbjct: 518 RWDDVERM 525



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 194/459 (42%), Gaps = 74/459 (16%)

Query: 29  NLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           N S     ++ C S        QI  Q  + G  +D F AS LI   +       ++ + 
Sbjct: 85  NRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCG---YLNDAR 141

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N   + +M+  Y+Q    ++A+ L+K  L     VD   Y  +        
Sbjct: 142 KLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLL----VDETDYDEIVGVGVGVD 197

Query: 146 SVFEG---------------KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           SV  G               + +H   +K GF+  + V NTL++ YA CG++S +RK+FD
Sbjct: 198 SVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFD 257

Query: 191 ESPVLDLVSWNSILAGYVN-----------ADNVEEAKFIYNKMP--------------- 224
                D+ SWNS++A Y             +D V+  +  YN +                
Sbjct: 258 GMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQ 317

Query: 225 --------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                         E N++   S++ ++ + G V  A + F  + +K++ SW+ +++ Y 
Sbjct: 318 IGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYG 377

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYI 329
            +   +EA+ +F  MI   +  + +  VSVL+AC++  ++K G    + +  +  +E  I
Sbjct: 378 MHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGI 437

Query: 330 NLQNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVE----KARALFD 384
              + ++ +    G +  A  L  +     D I W S++       +VE     AR LF 
Sbjct: 438 EHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFK 497

Query: 385 AMIEKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
             ++     +  ++S  YA   ++ +   + + M++HG+
Sbjct: 498 --LDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGL 534



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            ++  V SWN++I  FA +G + ++L  FS M+K  + PN  TF   + +C  +  +  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 547 HR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            + H  + +  +  +        ++D+  + G L +A +L + +P   +V +W +++  
Sbjct: 106 KQIHQQAFVFGYGSDIFVA--SALIDMYSKCGYLNDARKLFDEIP-ERNVVSWTSMISG 161


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/817 (32%), Positives = 443/817 (54%), Gaps = 77/817 (9%)

Query: 25  KPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           K  I+   L + LQ C   +S K   ++ + +   G + D+   S+L    T+     E 
Sbjct: 89  KWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           S   ++F  ++      +N +M    +      +I L+K M+++ V +D+YT+  ++++ 
Sbjct: 149 S---RVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSF 205

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +   SV  G+ +H  +LK+GF     V N+L+  Y     + +ARK+FDE    D++SWN
Sbjct: 206 SSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWN 265

Query: 202 SILAGYVNADNVEEAKFIYNKM-------------------PERNIIA------------ 230
           SI+ GYV+    E+   ++ +M                    +  +I+            
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKA 325

Query: 231 --------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                    N+++ ++ + G++  A  +F+EM  + +VS++++I+ Y +  +  EA+ LF
Sbjct: 326 CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLF 385

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M +  +  D   V +VL+ CA   ++  G  VH    +  +   I + NAL+ MY+  
Sbjct: 386 EEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA-- 443

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                                        KCGS+++A  +F  M  KD++SW+T+I GY+
Sbjct: 444 -----------------------------KCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 403 QHDQFSETLSLF-MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           ++   +E LSLF + ++     PDE T+  V+ AC  L A D+G+ IH YI +NG   + 
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +  +L+DMY K G +  A  +F     K + SW  +I G+ M+G   +++ +F++M+++
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+  +EI+FV +L AC H GLVDEG R FN M  E ++EP  +HY C+VD+L R G L +
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A   IE+MP+ PD   WGALL  C+ H D ++ E+V  K+ EL+P++ G++VL++NI+A 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
             +W+ V  +R  + +RG+ K PGCS IE  G ++ F+AGD ++P+   I+  L ++  +
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           +  EGY+P T     D ++ EKE  L  HSEKLA+A G+I+      IR+ KNLR+C DC
Sbjct: 775 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 834

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H  AKF+S+   REIV+RD +RFH FK G CSC  FW
Sbjct: 835 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 254/551 (46%), Gaps = 77/551 (13%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           NT +R + +    + A+ L  L ++    +D  T   + Q  A   S+ +GK + + +  
Sbjct: 65  NTQLRRFCESGNLENAVKL--LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
            GF  D  + + L  MY  CGDL  A ++FDE  +   + WN ++     + +   +  +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 220 YNKM----------------------------------------PERNIIASNSMIVLFG 239
           + KM                                         ERN +  NS++  + 
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +   V  A ++F EM ++D++SW+++I+ Y  N + E+ L +F+ M+   + +D   +VS
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V + CA+  ++  G +VH++ VK          N L+ MYS CG++ +A+ +F    +  
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           ++S+ SMI+GY + G                       ++G        E + LF EM+ 
Sbjct: 362 VVSYTSMIAGYAREG-----------------------LAG--------EAVKLFEEMEE 390

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI PD  T+ +V++ C     LD+GK +H +I++N L  +  +   L+DMY K G +  
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 450

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS-EMKKSGVTPNEITFVGVLGACR 538
           A  VF     K + SWN +I G++ N  A+++L +F+  +++   +P+E T   VL AC 
Sbjct: 451 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            +   D+G R  +  I  +    +      +VD+  + G L  A  L + +  S D+ +W
Sbjct: 511 SLSAFDKG-REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSW 568

Query: 599 GALLGACKKHG 609
             ++     HG
Sbjct: 569 TVMIAGYGMHG 579



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 236/507 (46%), Gaps = 43/507 (8%)

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL--VSWNSILAGYVNADNVEEAKFI 219
           FD  V   NT +  +   G+L  A KL   S   D+   +  S+L    ++ ++++ K +
Sbjct: 57  FDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEV 116

Query: 220 YNKMPERN-IIASN---SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
            N +     +I SN    + +++   G++ EA R+F E+  +  + W+ L++   ++  +
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
             ++ LF  M+   V +D      V  + ++L  V  G  +H   +K G     ++ N+L
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSL 236

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           +  Y     + +A K+FD     D+ISWNS+I+GY+  G  EK                 
Sbjct: 237 VAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG---------------- 280

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                          LS+F++M   GI  D AT+VSV + C     +  G+ +H+   K 
Sbjct: 281 ---------------LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKA 325

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
                     TL+DMY K G +D+A  VF    ++ V S+ ++I G+A  GLA +++++F
Sbjct: 326 CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLF 385

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            EM++ G++P+  T   VL  C    L+DEG R  +  I+E+ L  +      ++D+  +
Sbjct: 386 EEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR-VHEWIKENDLGFDIFVSNALMDMYAK 444

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE---LQPDHDGFH 632
            G ++EAE +   M +  D+ +W  ++G   K+        +   L+E     PD     
Sbjct: 445 CGSMQEAELVFSEMRV-KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVA 503

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRG 659
            +L    AS   +D   E+ G ++R G
Sbjct: 504 CVLPAC-ASLSAFDKGREIHGYIMRNG 529


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/689 (37%), Positives = 379/689 (55%), Gaps = 71/689 (10%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H  ++ AG+    ++ N L+NMY+ CG+L  A KLFD  P  +LVSW ++++G   
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 210 ADNVEEA------KFIYNKMPER---------------------------------NIIA 230
                EA        I  ++P +                                  +  
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            +++  ++ + G + +AC++F+EMP KD VSW+A+I  Y +   +EEAL+ F  MID  V
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            +D+ V+ S L AC  L   K G SVH+  VK+G E  I + NAL  MYS          
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS---------- 253

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSE 409
                                K G +E A  +F    E ++VVS++ +I GY + +Q  +
Sbjct: 254 ---------------------KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            LS+F+E++  GI P+E T  S+I AC +  AL+QG  +HA + K     +  + + L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +++A++ F    +    +WN+L+  F  +GL   +++ F  M   GV PN IT
Sbjct: 353 MYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAIT 412

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+ +L  C H GLV+EG  +F SM + + + P  +HY C++DLLGRAG LKEA+E I  M
Sbjct: 413 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  P+   W + LGAC+ HGD EMG+    KLV+L+P + G  VLLSNI+A++ +W+DV 
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 532

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR  M    V K+PG S ++     H F A D +H + + I   LD +  ++K  GY P
Sbjct: 533 SVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVP 592

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
            T  V  D+D   KE  L RHSE++A+AF LI++    PI + KNLR+C DCH+A KFIS
Sbjct: 593 XTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFIS 652

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   R+I+VRD  RFHHF  GSCSC D+W
Sbjct: 653 KVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 201/447 (44%), Gaps = 49/447 (10%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +++T+  K +  ++  Q+ + +I  G    TF  + L+   +      E+ ++ K+F  +
Sbjct: 11  VIQTY-AKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG---ELDHALKLFDTM 66

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              N   +  M+    Q +   +AI  +  M         + +    +A A   S+  GK
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   LK G  S+++V + L +MY+ CG +  A K+F+E P  D VSW +++ GY    
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 212 NVEEAKFIYNKMP---------------------------------------ERNIIASN 232
             EEA   + KM                                        E +I   N
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 233 SMIVLFGRKGNVAEACRLFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           ++  ++ + G++  A  +F  +   +++VS++ LI  Y + E  E+ L +F+ +    + 
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +E    S++ ACAN   ++ GT +HA  +KI  +    + + L+ MY  CG +  A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQA 366

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQF 407
           FD   +   I+WNS++S + + G  + A   F+ M+++ V    +++ ++++G +     
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 408 SETLSLFMEM-QHHGIRPDEATLVSVI 433
            E L  F  M + +G+ P E     VI
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVI 453



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 3/216 (1%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D   L  VI        L +GK +HA +   G    + L   L++MY K G +D+AL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               ++ + SW A+I G + N    +++  F  M+  G  P +  F   + AC  +G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G +  + +  +  +         + D+  + G + +A ++ E MP   +V +W A++  
Sbjct: 124 MG-KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV-SWTAMIDG 181

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
             K G+ E      +K+++ +   D  HVL S + A
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQ-HVLCSTLGA 216


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/762 (34%), Positives = 408/762 (53%), Gaps = 74/762 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++S +  +F  + +P    +N ++RAY  R           L        +NYT+P + +
Sbjct: 78  DLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLK 137

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +  L +   + +H H  +AG  +D++V+  L+++YA C     A  +F   P  D+V+
Sbjct: 138 ACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA 197

Query: 200 WNSILAGY---------------VNADNVEEAKFIYNKMP-------------------- 224
           WN++LAGY               +  D+   A  +   +P                    
Sbjct: 198 WNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 225 -------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                  +  ++   +++ ++ + G++  A R+F+ M  ++ V+WSAL+  +       E
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 278 ALVLFMNMIDHRV-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           A  LF +M+   +  +    V S L ACANL+ +  G  +HAL  K G+           
Sbjct: 318 AFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGL----------- 366

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                               + DL + NS++S Y K G +++A  LFD M+ KD VS+S 
Sbjct: 367 --------------------HTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSA 406

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           ++SGY Q+ +  E   +F +MQ   ++PD AT+VS+I AC+HL AL  GK  H  +   G
Sbjct: 407 LVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRG 466

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +   + +   LIDMY K G +D + ++F     + + SWN +I G+ ++GL  ++  +F 
Sbjct: 467 IASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFL 526

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +MK     P+++TF+ ++ AC H GLV EG R F+ M  ++ + P  +HY  MVDLL R 
Sbjct: 527 DMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARG 586

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L EA + I+ MP+  DV  WGALLGAC+ H + ++G++V   + +L P+  G  VLLS
Sbjct: 587 GFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLS 646

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI ++ GR+D+  EVR +   +G  K PGCS IE NG +H F+ GDR+H Q +EI   LD
Sbjct: 647 NIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELD 706

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
            +   +   GY  DT  V  D+++EEKE  L  HSEKLAIAFG++T+S    I + KNLR
Sbjct: 707 NILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLR 766

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C DCHT  K+++    R I+VRD +RFHHFK+G CSC DFW
Sbjct: 767 VCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 146/580 (25%), Positives = 241/580 (41%), Gaps = 126/580 (21%)

Query: 56  TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
            GL AD F ++ L+        F    ++  +F  + + +   +N M+  Y         
Sbjct: 158 AGLHADLFVSTALVDVYAKCASF---RHAATVFRRMPARDVVAWNAMLAGYALHGKYSDT 214

Query: 116 ICLYKLMLNN---NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD----VYV 168
           I    LM ++   N        PLLAQ  AL     +G+ +H + ++A    D    V V
Sbjct: 215 IACLLLMQDDHAPNASTLVALLPLLAQHGALS----QGRAVHAYSVRACSLHDHKDGVLV 270

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER-- 226
              L++MYA CG L  A ++F+   V + V+W++++ G+V    + EA  ++  M  +  
Sbjct: 271 GTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGL 330

Query: 227 --------------------------------------NIIASNSMIVLFGRKGNVAEAC 248
                                                 ++ A NS++ ++ + G + +A 
Sbjct: 331 CFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQAT 390

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            LF +M  KD VS+SAL+S Y QN   +EA  +F  M    V  D   +VS++ AC++L 
Sbjct: 391 TLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLA 450

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            ++ G   H   +  GI    ++ NALI MY+ CG I  + ++FD     D++SWN+MI+
Sbjct: 451 ALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIA 510

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           G                               Y  H    E  +LF++M+H    PD+ T
Sbjct: 511 G-------------------------------YGIHGLGKEATALFLDMKHQACEPDDVT 539

Query: 429 LVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            + +ISAC+H   + +GK W H    K G+         ++D+  + G +D A +   G 
Sbjct: 540 FICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGM 599

Query: 488 EEKG-VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             K  V  W AL                                   LGACR    +D G
Sbjct: 600 PLKADVRVWGAL-----------------------------------LGACRVHKNIDLG 624

Query: 547 HRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEEL 585
            +  +SMIQ+  L P  + ++  + ++   AG   EA E+
Sbjct: 625 -KQVSSMIQQ--LGPEGTGNFVLLSNIFSAAGRFDEAAEV 661



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 178/395 (45%), Gaps = 45/395 (11%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G+++ A  LF ++P   +  ++ALI  Y          +            +      VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            AC+ L  +++  +VH  A + G+   + +  AL+ +Y+ C     A  +F      D++
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           +WN+                               M++GYA H ++S+T++  + MQ   
Sbjct: 197 AWNA-------------------------------MLAGYALHGKYSDTIACLLLMQDDH 225

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGL---KINSILGTTLIDMYMKLGCV 477
             P+ +TLV+++       AL QG+ +HAY +R   L   K   ++GT L+DMY K G +
Sbjct: 226 A-PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHL 284

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG---VTPNEITFVGVL 534
             A  VF     +   +W+AL+ GF + G   ++  +F +M   G   ++P  +     L
Sbjct: 285 VYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SAL 342

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC ++  +  G +  ++++ +  L  +      ++ +  +AG++ +A  L + M +  D
Sbjct: 343 RACANLSDLCLG-KQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK-D 400

Query: 595 VATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
             ++ AL+    ++G  +   RV RK+    +QPD
Sbjct: 401 TVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 10/247 (4%)

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           I  N MI     CG +  AR LFD +    +  ++ +I  Y+               +  
Sbjct: 69  IDHNRMI-----CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRR 123

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
             +P+  T   V+ AC+ L+ L   + +H +  + GL  +  + T L+D+Y K     +A
Sbjct: 124 LPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHA 183

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             VF     + V +WNA++ G+A++G    ++     M+     PN  T V +L      
Sbjct: 184 ATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQH 242

Query: 541 GLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
           G + +G   H +       H  +        ++D+  + G L  A  + E+M +  +V T
Sbjct: 243 GALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEV-T 301

Query: 598 WGALLGA 604
           W AL+G 
Sbjct: 302 WSALVGG 308


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/758 (35%), Positives = 405/758 (53%), Gaps = 73/758 (9%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F ++  ++ +F  +   + F +N ++  Y +     +A+ LY  ML   +  D YT+P +
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCV 201

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +       +  G+ +H HV++ GF+SDV V N LI MY  CGD+ +AR +FD  P  D 
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPE-------------------------------- 225
           +SWN++++GY   D   E   ++  M E                                
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321

Query: 226 -------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                    +  +NS+I +    G   EA  +F +M  KDLVSW+A+IS YE+N + E+A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           +  +  M    V+ DE+ + SVLSACA L ++  G  +H  A + G+  Y+ + N+LI M
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           YS                               KC  ++KA  +F  +  K+V+SW+++I
Sbjct: 442 YS-------------------------------KCRCIDKALEVFHRIPNKNVISWTSII 470

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            G   + +  E L  F +M    ++P+  TLVSV+SAC  + AL  GK IHA+  + GL 
Sbjct: 471 LGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  L   L+DMY++ G ++ A   F+  E K V+SWN L+ G+A  G    ++E+F +M
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +S V P+EITF  +L AC   G+V +G  +F SM  +  + PN KHY  +VDLLGRAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L++A E I+ MP+ PD A WGALL AC+ + + E+GE   + + E+     G+++LL N+
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A  G+WD+V  VR +M    +   PGCS +E  G +H FL GD  HPQI EI+ +L+  
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            +K++  G +        DID  + E     HSE+LAIAFGLI   P  PI + KNL +C
Sbjct: 769 YEKMEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMC 827

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
            +CH   KFIS+   R I VRD  +FHHFK G CSC D
Sbjct: 828 ENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 175/589 (29%), Positives = 270/589 (45%), Gaps = 89/589 (15%)

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           ++PN  I    ++  +++     A+     M    V V+  TY  L +    + +  EG 
Sbjct: 60  QNPNSLILELCLKGDLEK-----ALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGS 114

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H +V K      V + N L++M+   GDL  A  +F +    DL SWN ++ GY  A 
Sbjct: 115 RVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAG 174

Query: 212 NVEEAKFIYNKM------P---------------------------------ERNIIASN 232
             +EA  +Y++M      P                                 E ++   N
Sbjct: 175 YFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ + G++  A  +F  MP++D +SW+A+IS Y +N++  E L LF  M +  V  
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D + + SV+SAC  L   + G  VH   +K G    +++ N+LI M+SS G    AE +F
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 DL+SW +MISGY K G  EKA                             ET +
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKA----------------------------VETYT 386

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +   M+H G+ PDE T+ SV+SAC  L  LD+G  +H +  + GL    I+  +LIDMY 
Sbjct: 387 I---MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYS 443

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K  C+D ALEVFH    K V SW ++I+G  +N  + ++L  F +M  S + PN +T V 
Sbjct: 444 KCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVS 502

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEELIES 588
           VL AC  +G +  G       I  H L       G     ++D+  R G ++ A     S
Sbjct: 503 VLSACARIGALSCGKE-----IHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS 557

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
                DVA+W  LL    + G   +   +  K++E  + PD   F  LL
Sbjct: 558 --CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 226/483 (46%), Gaps = 48/483 (9%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+++ +F R G++ EA  +F +M ++DL SW+ L+  Y +   ++EAL L+  M+   + 
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D      VL  C  L  +  G  VH   ++ G E  +++ NALI MY  CG+I +A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     D ISWN+MISGY                                ++D   E L
Sbjct: 253 FDRMPRRDRISWNAMISGYF-------------------------------ENDVCLEGL 281

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF  M+   + PD  T+ SVISAC  L     G+ +H Y+ K G      +  +LI M+
Sbjct: 282 RLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMH 341

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
             +GC D A  VF   E K + SW A+I G+  NGL +K++E ++ M+  GV P+EIT  
Sbjct: 342 SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIA 401

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY----GCMVDLLGRAGMLKEAEELIE 587
            VL AC  +GL+D+G      M+ E         Y      ++D+  +   + +A E+  
Sbjct: 402 SVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 588 SMPMSPDVATWGA-LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            +P + +V +W + +LG    +   E      + ++ L+P+      +LS   A  G   
Sbjct: 457 RIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC-ARIGALS 514

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK-KLKLE 705
              E+    +R G+    G      N ++  ++   R  P  N+ ++   ++A   + L 
Sbjct: 515 CGKEIHAHALRTGL----GFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLT 570

Query: 706 GYA 708
           GYA
Sbjct: 571 GYA 573



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 5/247 (2%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ   +  +E T ++++  C    A  +G  +H+Y+ K   ++   LG  L+ M+++ G 
Sbjct: 85  MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD 144

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A  VF    E+ + SWN L+ G+A  G  D++L ++  M   G+ P+  TF  VL  
Sbjct: 145 LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRT 204

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +  +  G R  +  +  +  E +      ++ +  + G +  A  + + MP   D  
Sbjct: 205 CGGLPDLARG-REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR-DRI 262

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL--EVRGM 654
           +W A++    ++     G R+   + E   D D    + S I A +   D+ L  EV G 
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPD-LMTMTSVISACEALGDERLGREVHGY 321

Query: 655 MVRRGVV 661
           +++ G V
Sbjct: 322 VIKTGFV 328


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/726 (35%), Positives = 413/726 (56%), Gaps = 42/726 (5%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF---IEMSYSFKIFAFLESPNGF 97
           ++ +Q  ++ + +  +G +    +A  L+    + LP    + + Y+  +F  + + + F
Sbjct: 10  RTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPA-STF 68

Query: 98  IFNTMMRAYIQRNV----PQQAICLYKLMLNNNVGVDNYTYPLLAQ-ASALRLSVFEGKL 152
           +F+T +RA  +       P     L++ M    V  D +T+  L + +S+ R       +
Sbjct: 69  LFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTM 128

Query: 153 IHDHVLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           +H   L+    S   +V N+LI+MY   G     R+ FDE PV D VSW  +++G     
Sbjct: 129 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISG----- 183

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                                       + G +++A  L  + P +D++SW++LI+ Y +
Sbjct: 184 --------------------------LAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSR 217

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
            +  +EA+  F NM+   +  D+V V+ VLSAC+ L  ++ G S+H+L  + G+    NL
Sbjct: 218 ADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENL 277

Query: 332 QNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
             ALI MY+ CG+   A ++FDA G      SWN++I GY K G V+ AR+LFD M  +D
Sbjct: 278 VVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRD 337

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           ++++++MI+GY    Q  E L LFM M+ H +R D  T+VS++SAC  L AL QG+ +HA
Sbjct: 338 IITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA 397

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            I    ++ +  +GT L+DMYMK G V+ A  VF    ++ V +W A+I G A NG+   
Sbjct: 398 CIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKA 457

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
            LE F +M+  G  PN ++++ VL AC H  L++EG  +F+ M   + + P  +HYGCM+
Sbjct: 458 GLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMI 517

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G+L EA +L+++MPM P+   W ++L AC+ H   ++ +     L++++PD D 
Sbjct: 518 DLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDA 577

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +V L NI     +W+D  ++R +M  R V K  G S +   G +H+F+  D++HP+I E
Sbjct: 578 VYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILE 637

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  ML+E++ +LK  GY+P T +V  D+D+EEKE TL  HSEKLAIAFGL++++P  P+ 
Sbjct: 638 IIAMLEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVH 697

Query: 751 IMKNLR 756
           I+KNLR
Sbjct: 698 IIKNLR 703



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/618 (22%), Positives = 271/618 (43%), Gaps = 80/618 (12%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
             N M+  +I+  +  +A  +Y+ M+ + +    +T+  +        S +E   +H  VL
Sbjct: 765  LNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVC----STYEALQLHGRVL 820

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG------------ 206
              G   + +V + L+N Y       A+  LF E P+ +    N +L G            
Sbjct: 821  ALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELIC 880

Query: 207  ------------------------YVNADNVEEAKFIYNKMPE-----RNIIASNSMIVL 237
                                    Y N + +E+ + ++  + +      NI  SNS++ L
Sbjct: 881  CFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDL 940

Query: 238  FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
            +   G+  +  +   ++  +D++SW++++S Y      +EA+     M+ H  M      
Sbjct: 941  YSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSF 1000

Query: 298  VSVLSACANLTVVKAGTSVHALAVKIGIECY-INLQNALIHMYSSCGEITTAEKLFDAGH 356
            VS+L+        + G  +H +  K+G  C  +++Q  LI MY  C     +  +F+   
Sbjct: 1001 VSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 1060

Query: 357  NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
            ++ L   NS+I+  L+C        +FDA +E                        +   
Sbjct: 1061 SIALECCNSLITSSLRCN-------MFDAALE------------------------ILHC 1089

Query: 417  MQHHGIRPDEATLVSVISACTHLVA--LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M   G+ PD+ T  + + A +   +  L   + +H+ + K G +++  + ++LI  Y   
Sbjct: 1090 MIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACA 1149

Query: 475  GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
            G + ++  +F G  +  V  + A+I   A  G   +++E+F +M  SG+ P+ +TF+  +
Sbjct: 1150 GQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAI 1209

Query: 535  GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
              C   G+ +EG      M     L+P+ +H+ CMV+LL R G +KEA E++E  P+   
Sbjct: 1210 AGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHY 1269

Query: 595  VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
               W +LL +CK HG++ +G+R    L+++        + +SN     G  +  L ++ M
Sbjct: 1270 TKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEM 1329

Query: 655  MVRRGVVKIPGCSMIEAN 672
               + V K  G S+IE +
Sbjct: 1330 TNVKEVKK-SGHSLIEVS 1346



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 210/457 (45%), Gaps = 62/457 (13%)

Query: 33   LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY-SFKIFAFL 91
              T L  C +++   Q+  +++  GL  + F  S L+         +E  + S  +F  L
Sbjct: 800  FSTILGVCSTYEAL-QLHGRVLALGLCCNPFVGSALVNHYM----HVESPHASLSLFREL 854

Query: 92   ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-G 150
               N  + N ++R      + ++ IC +  M    + ++  +Y    +         E G
Sbjct: 855  PLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQG 914

Query: 151  KLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H  VLKAG+  S+++++N+L+++Y+  GD     K  ++    D++SWNSIL+ Y +
Sbjct: 915  RQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYAD 974

Query: 210  ADNVEEAKFI------YNKMPE-RNIIA-------------------------------- 230
              +++EA +       + KMP  R+ ++                                
Sbjct: 975  RGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVH 1034

Query: 231  -SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
               ++I ++G+      +  +F E+P   L   ++LI+   +  M++ AL +   MI   
Sbjct: 1035 VQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEG 1094

Query: 290  VMVDEVVVVSVLSACANLTVVKAGTS---VHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            V  D+V   + + A  +L+   + TS   +H+  VK+G E  + + ++LI  Y+  G+++
Sbjct: 1095 VTPDDVTFSATMKA-ISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLS 1153

Query: 347  TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYA 402
            ++  +F+   + ++I + ++IS   + G   +A  LFD M+    + D V++   I+G  
Sbjct: 1154 SSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCD 1213

Query: 403  QHDQFSETLSLFMEMQHHG--IRPDE---ATLVSVIS 434
            Q   F E   L +E+      + PDE   A +V+++S
Sbjct: 1214 QAGMFEEG-RLVIELMRASRELDPDERHFACMVNLLS 1249



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 6/225 (2%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  +DV S + MI+G+ +        +++  M   GIR    T  +++  C+   AL   
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ-- 814

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
             +H  +   GL  N  +G+ L++ YM +     +L +F     +  +  N ++ G    
Sbjct: 815 --LHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSK 564
            L ++ +  F +M++  +  N +++   +  C   G  +++G +    +++   +  N  
Sbjct: 873 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +VDL    G   +  + +  + +S DV +W ++L      G
Sbjct: 933 LSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSMYADRG 976


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/467 (48%), Positives = 315/467 (67%), Gaps = 4/467 (0%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           N++IH Y+  G++ +A++LF+       ++W SM++G+ + G VE AR +F+ M E+D+V
Sbjct: 81  NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MISG   +    E L LF  M   G  P+  T+VSV+SACT   AL+ GKW+H ++
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFV 200

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K  L+ +  LGT L+DMY K G V+ ALEVF G   +   +WNA+I G AMNG + K+L
Sbjct: 201 EKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKAL 260

Query: 513 EMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           +MF +M+ +G V P+E+TFVGVL AC H G VD G  HF ++ Q++ +E   +HY CMVD
Sbjct: 261 DMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVD 320

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LL R+G L+EA +LI  MPM PDV  W ALLG C+ H + +M E V   + E++    G 
Sbjct: 321 LLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENV---ISEMEATCSGD 377

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           HVLLSN++A+ GRW+ V +VR  M  +G+ KIPGCS +E +G IHEF++GD++HP  ++I
Sbjct: 378 HVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDI 437

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
              L E+  +++  GY  +T EV +DI+ EEKE  L  HSEKLAIAFGLI   P   IRI
Sbjct: 438 HAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRI 497

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +KNLR C DCH+ AK +S+ + REIVVRDR RFHHF+ G+CSC DFW
Sbjct: 498 VKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 179/373 (47%), Gaps = 36/373 (9%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H    K GF      NN  I  Y   G ++ AR++FD  P  D VS+NS++ GY  + +
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           V  A+ ++ ++     +   SM+  F R G+V  A R+F+EMP++DLVSW+A+IS    N
Sbjct: 93  VGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN 152

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            +  EAL LF  M++   + +   VVSVLSAC     ++ G  VH    K  +     L 
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG 212

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MY+ CG +  A ++F      +  +WN+MI+G                       
Sbjct: 213 TALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGL---------------------- 250

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAY 451
                ++GY+     ++ L +F +M+ +G + PDE T V V+ AC+H   +D GK  H Y
Sbjct: 251 ----AMNGYS-----AKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGK-EHFY 300

Query: 452 IRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGLA 508
                  +  IL     ++D+  + G +  A ++      K  V  W AL+ G  ++   
Sbjct: 301 TIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNV 360

Query: 509 DKSLEMFSEMKKS 521
             +  + SEM+ +
Sbjct: 361 KMAENVISEMEAT 373



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 42/224 (18%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N M+   +   +P +A+CL++ M+      +  T   +  A     
Sbjct: 129 RVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAG 188

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK +H  V K     D ++   L++MYA CG +  A ++F      +  +WN+++ 
Sbjct: 189 ALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMIN 248

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNS-------------------------------- 233
           G        +A  ++ +M     +A +                                 
Sbjct: 249 GLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGV 308

Query: 234 ---------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                    M+ L  R G++ EA +L  EMP K D+V W AL+ 
Sbjct: 309 ELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLG 352


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/722 (36%), Positives = 406/722 (56%), Gaps = 50/722 (6%)

Query: 80  EMSYSFKIFAFLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           ++ ++ K+F     P+  +  +N M+ AY +   P++A+ L++ M   N      ++  L
Sbjct: 37  QLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRN----TVSWNGL 92

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
                    + E + + D +     D +V    +++  Y   GD++ A +LF   P  ++
Sbjct: 93  ISGHIKNGMLSEARRVFDTMP----DRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV 148

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           VSW  +L G +    V++A+ +++ MPE++++A  +MI  +  +G + EA  LF EMPK+
Sbjct: 149 VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR 208

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           ++V+W+A++S Y +N   + A  LF  M +     +EV   ++L                
Sbjct: 209 NVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLG-------------- 250

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
                                Y+  G +  A  LFDA     ++  N MI G+   G V+
Sbjct: 251 ---------------------YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVD 289

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           KAR +F  M E+D  +WS MI  Y +     E L LF  MQ  G+  +  +L+SV+S C 
Sbjct: 290 KARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCV 349

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
            L +LD GK +HA + ++    +  + + LI MY+K G +  A +VF+    K V  WN+
Sbjct: 350 SLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNS 409

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G++ +GL +++L +F +M  SGV P+++TF+GVL AC + G V EG   F +M  ++
Sbjct: 410 MITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKY 469

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
           ++EP  +HY C+VDLLGRA  + EA +L+E MPM PD   WGALLGAC+ H   ++ E  
Sbjct: 470 QVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVA 529

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
             KL +L+P + G +VLLSN++A KGRW DV  +R  +  R V K+PGCS IE    +H 
Sbjct: 530 VEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHM 589

Query: 678 FLAGD-RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           F  GD + HP+   I  ML+++   L+  GY PD   V  D+D+EEK  +L  HSEKLA+
Sbjct: 590 FTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAV 649

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           A+GL+ +    PIR+MKNLR+C DCH+A K I++   REI++RD +RFHHFK G CSC D
Sbjct: 650 AYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKD 709

Query: 797 FW 798
           +W
Sbjct: 710 YW 711


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/729 (36%), Positives = 393/729 (53%), Gaps = 83/729 (11%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           ML + V  +NYT+P   +A +       G+ IH H + AG  +D++V+  L++MY  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA--KFIYNKM---------------- 223
           L  A  +F   P  DLV+WN++LAGY +      A    +  +M                
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 224 -------------------------PERN--------IIASNSMIVLFGRKGNVAEACRL 250
                                    P RN        ++   +++ ++ + G++  A R+
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTV 309
           F  MP ++ V+WSALI  +       +A +LF  M+   +  +    + S L ACA+L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  +HAL  K G+                               + DL + NS++S 
Sbjct: 241 LRMGEQLHALLAKSGV-------------------------------HADLTAGNSLLSM 269

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G +++A ALFD M  KD VS+S ++SGY Q+ +  E   +F +MQ   + PD AT+
Sbjct: 270 YAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATM 329

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VS+I AC+HL AL  G+  H  +   GL   + +   LIDMY K G +D + +VF+    
Sbjct: 330 VSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 389

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + + SWN +I G+ ++GL  ++  +F EM   G  P+ +TF+ +L AC H GLV EG   
Sbjct: 390 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 449

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F+ M   + L P  +HY CMVDLL R G L EA E I+SMP+  DV  W ALLGAC+ + 
Sbjct: 450 FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 509

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++G++V R + EL P+  G  VLLSNI+++ GR+D+  EVR +   +G  K PGCS I
Sbjct: 510 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 569

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E NG +H F+ GD++HPQ  EI   LD +   +K  GY PDT  V  D+++EEKE  L  
Sbjct: 570 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 629

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLAIA+G++++S    I + KNLR+C DCHT  K IS    R I+VRD +RFHHFK+
Sbjct: 630 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKN 689

Query: 790 GSCSCMDFW 798
           G CSC DFW
Sbjct: 690 GQCSCGDFW 698



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 48/275 (17%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+ ++F  + + N   ++ ++  ++  +   QA  L+K ML   +   + T    + ASA
Sbjct: 176 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT----SIASA 231

Query: 143 LRLS-----VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           LR       +  G+ +H  + K+G  +D+   N+L++MYA  G +  A  LFDE  V D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI----------------------------- 228
           VS++++++GYV     EEA  ++ KM   N+                             
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 229 -----IAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                +AS     N++I ++ + G +  + ++F  MP +D+VSW+ +I+ Y  + + +EA
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
             LF+ M +     D V  + +LSAC++  +V  G
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEG 446



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 17/264 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ ++  Y+Q    ++A  ++K M   NV  D  T   L  A +   ++  G+  H  V+
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
             G  S+  + N LI+MYA CG +  +R++F+  P  D+VSWN+++AGY      +EA  
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 219 IYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFKEM-------PKKDLVSWSALIS 267
           ++ +M            +         G V E    F  M       P+ +   +  ++ 
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME--HYICMVD 471

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
              +    +EA     +M    +  D  V V++L AC     +  G  V  +  ++G E 
Sbjct: 472 LLSRGGFLDEAYEFIQSM---PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG 528

Query: 328 YINLQNALIHMYSSCGEITTAEKL 351
             N    L ++YS+ G    A ++
Sbjct: 529 TGNFV-LLSNIYSAAGRFDEAAEV 551


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/784 (34%), Positives = 417/784 (53%), Gaps = 107/784 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA--- 142
           K+F  +   +   +N+ + A  +    +QA+  ++ M   N+ + ++T   +A A +   
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208

Query: 143 ----LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
               LRL    GK +H + L+ G D   + NN L+ MYA  G +  ++ LF+     D+V
Sbjct: 209 VMHGLRL----GKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMV 263

Query: 199 SWNSILAGYVNADNVEEAKFIYNKM----------------P-----ER----------- 226
           SWN++++ +  +D   EA   +  M                P     ER           
Sbjct: 264 SWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYV 323

Query: 227 --------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                   N    ++++ ++     V    R+F  +  + +  W+A+IS Y +N + E+A
Sbjct: 324 LRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKA 383

Query: 279 LVLFMNMID-HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           L+LF+ MI    ++ +   + SV+ AC +        S+H  AVK+G +    +QNAL+ 
Sbjct: 384 LILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMD 443

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS  G++  +E                                +FD+M  +D VSW+TM
Sbjct: 444 MYSRMGKMDISE-------------------------------TIFDSMEVRDRVSWNTM 472

Query: 398 ISGYAQHDQFSETLSLFMEMQH-----------------HGIRPDEATLVSVISACTHLV 440
           I+GY    ++S  L L  EMQ                     +P+  TL++V+  C  L 
Sbjct: 473 ITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALA 532

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           A+ +GK IHAY  +N L  +  +G+ L+DMY K GC++ +  VF+    K V +WN LI+
Sbjct: 533 AIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIM 592

Query: 501 GFAMNGLADKSLEMFSEM-----KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
              M+G  +++LE+F  M     +     PNE+TF+ V  AC H GL+ EG   F  M  
Sbjct: 593 ACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKH 652

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD-VATWGALLGACKKHGDHEMG 614
           +H +EP S HY C+VDLLGRAG L+EA EL+ +MP   D V  W +LLGAC+ H + E+G
Sbjct: 653 DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELG 712

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           E   + L+ L+P+    +VLLSNI++S G W+  +EVR  M + GV K PGCS IE    
Sbjct: 713 EVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDE 772

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +H+F+AGD +HPQ  ++   L+ +++K++ EGY PDT  V  ++D++EKE  L  HSEKL
Sbjct: 773 VHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKL 832

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           AIAFG++   P   IR+ KNLR+CNDCH A KFIS+  +REI+VRD  RFHHFK G+CSC
Sbjct: 833 AIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSC 892

Query: 795 MDFW 798
            D+W
Sbjct: 893 GDYW 896



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/573 (26%), Positives = 255/573 (44%), Gaps = 98/573 (17%)

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +R+  + N  ++AI  Y  M  +    DN+ +P + +A +    +  G+ IH   +K G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 163 -DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             S V V NTL+NMY  CG +    K+FD     D VSWNS +A     +  E+A   + 
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFR 183

Query: 222 KMPERNI-----------------------------------------IASNSMIVLFGR 240
            M   N+                                           +N+++ ++ +
Sbjct: 184 AMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAK 243

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G V ++  LF+    +D+VSW+ +IS + Q++ + EAL  F  M+   V +D V + SV
Sbjct: 244 LGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASV 303

Query: 301 LSACANLTVVKAGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFD--AGH 356
           L AC++L  +  G  +HA  ++    IE    + +AL+ MY +C ++ +  ++FD   G 
Sbjct: 304 LPACSHLERLDVGKEIHAYVLRNNDLIENSF-VGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
            ++L  WN+MISGY + G  EKA  LF  MI+                            
Sbjct: 363 RIEL--WNAMISGYARNGLDEKALILFIEMIKVA-------------------------- 394

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
               G+ P+  T+ SV+ AC H  A    + IH Y  K G K +  +   L+DMY ++G 
Sbjct: 395 ----GLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGK 450

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT------------ 524
           +D +  +F   E +   SWN +I G+ ++G    +L +  EM++   T            
Sbjct: 451 MDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEK 510

Query: 525 -----PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
                PN IT + VL  C  +  + +G +  ++    + L  +      +VD+  + G L
Sbjct: 511 GGPYKPNAITLMTVLPGCAALAAIAKG-KEIHAYAIRNMLASDITVGSALVDMYAKCGCL 569

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
             +  +   MP + +V TW  L+ AC  HG  E
Sbjct: 570 NLSRRVFNEMP-NKNVITWNVLIMACGMHGKGE 601



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 37/359 (10%)

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P +   SW   +    ++  + EA+  ++ M       D     +VL A + L  +K G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 315 SVHALAVKIGI-ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            +HA AVK G     + + N L++MY  CG I    K+FD   + D +SWNS I+   + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR- 171

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                                          +++ + L  F  MQ   +     TLVSV 
Sbjct: 172 ------------------------------FEKWEQALEAFRAMQMENMELSSFTLVSVA 201

Query: 434 SACTHLV---ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
            AC++L     L  GK +H Y  + G +  +     L+ MY KLG VD++  +F    ++
Sbjct: 202 LACSNLGVMHGLRLGKQLHGYSLRVGDQ-KTFTNNALMAMYAKLGRVDDSKALFESFVDR 260

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            + SWN +I  F+ +    ++L  F  M   GV  + +T   VL AC H+  +D G    
Sbjct: 261 DMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIH 320

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             +++ + L  NS     +VD+      ++    + + + +   +  W A++    ++G
Sbjct: 321 AYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI-LGRRIELWNAMISGYARNG 378



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/436 (19%), Positives = 185/436 (42%), Gaps = 71/436 (16%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           LI ++F  S L+    +     ++    ++F  +      ++N M+  Y +  + ++A+ 
Sbjct: 329 LIENSFVGSALVDMYCNCR---QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 385

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK-LIHDHVLKAGFDSDVYVNNTLINMY 176
           L+  M+     + N T       + +    F  K  IH + +K GF  D YV N L++MY
Sbjct: 386 LFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMY 445

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----------- 225
           +  G +  +  +FD   V D VSWN+++ GYV +     A  + ++M             
Sbjct: 446 SRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDD 505

Query: 226 ----------------------------------------RNIIASN-----SMIVLFGR 240
                                                   RN++AS+     +++ ++ +
Sbjct: 506 NDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAK 565

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-----RVMVDEV 295
            G +  + R+F EMP K++++W+ LI     +   EEAL LF NM+           +EV
Sbjct: 566 CGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEV 625

Query: 296 VVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             ++V +AC++  ++  G ++ + +    G+E   +    ++ +    G++  A +L + 
Sbjct: 626 TFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNT 685

Query: 355 -GHNLDLI-SWNSMISGYLKCGSVEKARALFDAM--IEKDVVSWSTMISG-YAQHDQFSE 409
                D + +W+S++       +VE        +  +E +V S   ++S  Y+    +++
Sbjct: 686 MPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNK 745

Query: 410 TLSLFMEMQHHGIRPD 425
            + +   M+  G++ +
Sbjct: 746 AMEVRKNMRQMGVKKE 761



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 43/269 (15%)

Query: 40  CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF 99
           C++F     I    +  G   D +  + L+   + +    +M  S  IF  +E  +   +
Sbjct: 413 CEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMG---KMDISETIFDSMEVRDRVSW 469

Query: 100 NTMMRAYIQRNVPQQAICLYKLM--LNNNVGV---------------DNYTYPLLAQASA 142
           NTM+  Y+       A+ L   M  + N   V               +  T   +    A
Sbjct: 470 NTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCA 529

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++ +GK IH + ++    SD+ V + L++MYA CG L+ +R++F+E P  ++++WN 
Sbjct: 530 ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNV 589

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           ++         EEA  ++  M                    VAEA R  +  P +  V++
Sbjct: 590 LIMACGMHGKGEEALELFKNM--------------------VAEAGRGGEAKPNE--VTF 627

Query: 263 SALISCYEQNEMYEEALVLFMNMI-DHRV 290
             + +    + +  E L LF  M  DH V
Sbjct: 628 ITVFAACSHSGLISEGLNLFYRMKHDHGV 656


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/706 (36%), Positives = 372/706 (52%), Gaps = 72/706 (10%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+  L +  A R  +  G+ +H  +   G   +      L NMYA C     AR++FD  
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------------------------- 227
           P  D V+WN+++AGY      E A  +  +M E +                         
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 228 ---------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                          +  S +++ ++ + G V  A ++F  M  ++ VSW+A+I  Y +N
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL LF  M+   V V +V V++ L AC  L  +  G  VH L V+IG+E  +N+ 
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NALI MY                                KC   + A  +FD +  K  V
Sbjct: 467 NALITMYC-------------------------------KCKRTDLAAQVFDELGYKTRV 495

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MI G  Q+    + + LF  MQ   ++PD  TLVS+I A   +    Q +WIH Y 
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYS 555

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L  +  + T LIDMY K G V  A  +F+   ++ V +WNA+I G+  +G    ++
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           E+F EMK SG  PNE TF+ VL AC H GLVDEG  +F+SM +++ LEP  +HYG MVDL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG L EA   I+ MPM P ++ +GA+LGACK H + E+ E   +++ EL+P+   +H
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYH 735

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLL+NI+A+   W DV  VR  M ++G+ K PG S+++    IH F +G   H Q  +I 
Sbjct: 736 VLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIY 795

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L ++ +++K  GY PDT  +  D++ + K   L  HSEKLAIA+GLI  +P   I+I 
Sbjct: 796 ARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIK 854

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCH A K IS    REI++RD  RFHHFK G CSC D+W
Sbjct: 855 KNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/491 (22%), Positives = 216/491 (43%), Gaps = 76/491 (15%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +Q+   GL  +  AA+ L               + ++F  + + +   +N ++  Y +  
Sbjct: 249 AQLAARGLSPEALAATALANMYAKCR---RPGDARRVFDRMPARDRVAWNALVAGYARNG 305

Query: 111 VPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
           + + A+ +  ++   +    D  T   +  A A   ++   + +H   ++ GFD  V V+
Sbjct: 306 LAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVS 365

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----- 224
             ++++Y  CG + +ARK+FD     + VSWN+++ GY    +  EA  ++ +M      
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVD 425

Query: 225 ----------------------------------ERNIIASNSMIVLFGRKGNVAEACRL 250
                                             E N+   N++I ++ +      A ++
Sbjct: 426 VTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQV 485

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F E+  K  VSW+A+I    QN   E+A+ LF  M    V  D   +VS++ A A+++  
Sbjct: 486 FDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDP 545

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
                +H  ++++ ++  + +  ALI MY+ CG ++ A  LF++  +  +I+WN+MI GY
Sbjct: 546 LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGY 605

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
              GS + A                               + LF EM+  G  P+E T +
Sbjct: 606 GSHGSGKVA-------------------------------VELFEEMKSSGKVPNETTFL 634

Query: 431 SVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE- 488
           SV+SAC+H   +D+G+   + ++++ GL+       T++D+  + G +  A         
Sbjct: 635 SVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPM 694

Query: 489 EKGVSSWNALI 499
           E G+S + A++
Sbjct: 695 EPGISVYGAML 705



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 13/266 (4%)

Query: 402 AQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           A        L+ F  M    G  P   T  S++  C     L  G+ +HA +   GL   
Sbjct: 200 ASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPE 259

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
           ++  T L +MY K     +A  VF     +   +WNAL+ G+A NGLA+ ++ M   M++
Sbjct: 260 ALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQE 319

Query: 521 S-GVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
             G  P+ +T V VL AC   + +G   E H    +       +        ++D+  + 
Sbjct: 320 EDGERPDAVTLVSVLPACADAQALGACREVH----AFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G +  A ++ + M     V +W A++    ++GD      + +++V    D     V L+
Sbjct: 376 GAVDSARKVFDGMQDRNSV-SWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV-LA 433

Query: 637 NIHASK--GRWDDVLEVRGMMVRRGV 660
            +HA    G  D+   V  ++VR G+
Sbjct: 434 ALHACGELGFLDEGRRVHELLVRIGL 459


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/802 (32%), Positives = 434/802 (54%), Gaps = 78/802 (9%)

Query: 44   KQFTQILSQMILTGLIADTFAASRLIKFSTDL-------LPFIEMSYSFKIFAFLESPNG 96
            K+  Q+ S+   +GL  D F+   ++   +++       L     +Y+ K+    ++P+ 
Sbjct: 810  KEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDV 869

Query: 97   FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            F +N  +   +       AI  +  M   N+  D  T  ++  A A    +  GK +H  
Sbjct: 870  FCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGI 929

Query: 157  VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
             +K+G DSDV V N+L+NMY+  G    AR++F++   LDL+SWNS+++    +   EE+
Sbjct: 930  AVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEES 989

Query: 217  KFIYNKM------PERNIIAS----------------------------------NSMIV 236
              ++  +      P+   +AS                                   ++I 
Sbjct: 990  VNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLID 1049

Query: 237  LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
            ++ + G + EA  LF+     DL  W+A++  Y      ++AL LF  +       D++ 
Sbjct: 1050 VYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQIT 1109

Query: 297  VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
            + +   AC  L ++  G  +HA A+K G +  +++ + ++ MY                 
Sbjct: 1110 LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY----------------- 1152

Query: 357  NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
                          +KCG +  A  +F+ +   D V+W++MISG   +    + L ++  
Sbjct: 1153 --------------IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 1198

Query: 417  MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
            M+   + PDE T  ++I A + + AL+QG+ +HA + K     +  +GT+L+DMY K G 
Sbjct: 1199 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 1258

Query: 477  VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
            +++A  +F     + ++ WNA+++G A +G A++++ +F  MK  G+ P+ ++F+G+L A
Sbjct: 1259 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 1318

Query: 537  CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
            C H GL  E + + +SM  ++ +EP  +HY C+VD LGRAG+++EA+++IE+MP     +
Sbjct: 1319 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 1378

Query: 597  TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
               ALLGAC+  GD E G+RV  +L  L+P     +VLLSNI+A+  RWDDV + R MM 
Sbjct: 1379 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 1438

Query: 657  RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            R+ V K PG S I+   ++H F+  DR+HPQ + I + ++EM K ++ +GY PDT  V  
Sbjct: 1439 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 1498

Query: 717  DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
            D++ EEKE +L+ HSEKLAIA+GLI+      IR++KNLR+C DCH A K+IS+ F+REI
Sbjct: 1499 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 1558

Query: 777  VVRDRHRFHHFKHGSCSCMDFW 798
            V+RD +RFHHF+ G CSC D+W
Sbjct: 1559 VLRDANRFHHFRDGVCSCGDYW 1580



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 160/616 (25%), Positives = 294/616 (47%), Gaps = 76/616 (12%)

Query: 51   SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI--- 107
            ++++++G   D F ++ L+   +       +S + ++F      +   +N ++ AY    
Sbjct: 645  ARIVVSGSAGDHFLSNNLLTMYSKC---GSLSSARQVFDTTPERDLVTWNAILGAYAASV 701

Query: 108  --QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-----IHDHVLKA 160
                   Q+ + L++L L  ++G    +   +  A  L+L +  G L     +H + +K 
Sbjct: 702  DSNDGNAQEGLHLFRL-LRASLG----STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI 756

Query: 161  GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
            G + DV+V+  L+N+Y+ CG +  AR LFD     D+V WN +L GYV     +EA  ++
Sbjct: 757  GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 221  NKMPERNIIASN-SMIVLFGRKGNV-------------AEACRLFKEMPKKDLVSWSALI 266
            ++     +     S+ ++      V             A A +L       D+  W+  +
Sbjct: 817  SEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKL 876

Query: 267  S-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
            S C    + +  A+  F+NM    +  D V ++ VL+A A    ++ G  VH +AVK G+
Sbjct: 877  SECLWAGDNWG-AIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGL 935

Query: 326  ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
            +  +++ N+L++MYS  G    A ++F+   +LDLISWNSMIS    C            
Sbjct: 936  DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS---SC------------ 980

Query: 386  MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV-ALDQ 444
                            AQ     E+++LF+++ H G++PD  TL SV+ AC+ L+  L+ 
Sbjct: 981  ----------------AQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNI 1024

Query: 445  GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
             + IH +  K G   +S + TTLID+Y K G ++ A  +F   ++  ++ WNA++ G+ +
Sbjct: 1025 SRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYII 1084

Query: 505  NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG---HRHFNSMIQEHRLEP 561
                 K+LE+FS + KSG   ++IT      AC  + L+D+G   H H      +  L  
Sbjct: 1085 GNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 1144

Query: 562  NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
            NS     ++D+  + G +  A  ++ +   +PD   W +++  C  +G+ +   R+  ++
Sbjct: 1145 NSG----ILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 1199

Query: 622  VE--LQPDHDGFHVLL 635
             +  + PD   F  L+
Sbjct: 1200 RQSRVMPDEYTFATLI 1215



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 146/351 (41%), Gaps = 58/351 (16%)

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G   HA  V  G      L N L+ MYS CG +++A ++FD     DL++WN+++  Y  
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAY-- 697

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
             SV+                      G AQ     E L LF  ++         TL  V
Sbjct: 698 AASVDSN-------------------DGNAQ-----EGLHLFRLLRASLGSTTRMTLAPV 733

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +  C +   L   + +H Y  K GL+ +  +   L+++Y K G + +A  +F    E+ V
Sbjct: 734 LKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV 793

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
             WN ++ G+   GL  ++ ++FSE  +SG+ P+E +   +L     +   DEG +    
Sbjct: 794 VLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEG-KWLAD 851

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            +Q +                  A  L  +++       +PDV  W   L  C   GD+ 
Sbjct: 852 QVQAY------------------AAKLSLSDD-------NPDVFCWNKKLSECLWAGDNW 886

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV---LEVRGMMVRRGV 660
                   +  L  D+D   +L+  + A+    DD+    +V G+ V+ G+
Sbjct: 887 GAIECFVNMNGLNIDYDAVTLLV--VLAAVAGTDDLELGKQVHGIAVKSGL 935


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/770 (34%), Positives = 411/770 (53%), Gaps = 97/770 (12%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           +TF ++ LI   T       ++Y+  +F  +  PN F +NT++  Y +  +  Q   ++ 
Sbjct: 39  ETFLSNNLI---TAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFN 95

Query: 121 LM-----LNNNVGVDNYT-----------YPLLAQASALRLS----------------VF 148
           LM     ++ N+ +  Y            Y L+ + +A+ L+                V 
Sbjct: 96  LMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVD 155

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            G+ I+  +LK GF SDV+V + L++MY   G +  A++ FDE                 
Sbjct: 156 LGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDE----------------- 198

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                         MPERN++  N+MI    R G + E+ RLF  + ++D +SW+ +I+ 
Sbjct: 199 --------------MPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
             QN +  EAL +F  M      +D+    SVL+AC +L  +  G  +HA  ++   +  
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + + +AL+ MYS                               KC S++ A  +F  M +
Sbjct: 305 VFVGSALVDMYS-------------------------------KCRSIKSAETVFKRMPQ 333

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           K+V+SW+ M+ GY Q+    E + +F EMQ +G+ PD+ TL SVIS+C +L +L++G   
Sbjct: 334 KNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQF 393

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H     +GL     +   LI +Y K G  +N+  +F     +   SW AL+ G+A  G A
Sbjct: 394 HCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKA 453

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           ++++ +F  M   G+ P+ +TF+GVL AC   GLV++G ++F SMI+EH + P   H  C
Sbjct: 454 NETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTC 513

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           ++DLLGRAG L+EA   I +MP  PDV  W  LL +C+ HGD E+G+     L+ L+P +
Sbjct: 514 IIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQN 573

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
              +VLLS+++ASKG+WD V ++R  M  + V K PG S I+  G +H F A D++ P +
Sbjct: 574 PASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFL 633

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
            +I   L+++  K+  EGY PD   V  D+++ EK   L  HSEKLAIAFGLI + P  P
Sbjct: 634 GQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLP 693

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IR++KNLR+C DCH A KFIS+   REI+VRD  RFH FK G+CSC DFW
Sbjct: 694 IRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/562 (27%), Positives = 279/562 (49%), Gaps = 64/562 (11%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           + K +H  +LK     + +++N LI  Y   G+L+ A  +FD  P  +L SWN+IL+ Y 
Sbjct: 23  QAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYS 82

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
               + + + I+N MP R+ ++ N  I  +   G+ ++A R++K M K            
Sbjct: 83  KLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK------------ 130

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
                             D  + ++ +   ++L  C+    V  G  ++   +K G    
Sbjct: 131 ------------------DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSD 172

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + + + L+ MY+  G I  A++ FD     +++  N+MI+G ++CG +E+++ LF  + E
Sbjct: 173 VFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKE 232

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           +D +SW+ MI+G  Q+    E L +F EM+  G   D+ T  SV++AC  L+AL +GK I
Sbjct: 233 RDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQI 292

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           HAY+ +   K N  +G+ L+DMY K   + +A  VF    +K V SW A+++G+  NG +
Sbjct: 293 HAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFS 352

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYG 567
           ++++++F EM+++GV P++ T   V+ +C ++  ++EG + H  +++    L        
Sbjct: 353 EEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG--LISFITVSN 410

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG---RKLVE- 623
            ++ L G+ G  + +  L   M +  +V +W ALL    + G  +  E +G   R L   
Sbjct: 411 ALITLYGKCGSTENSHRLFTEMNIRDEV-SWTALLAGYAQFG--KANETIGLFERMLAHG 467

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L+PD   F  +LS               R  +V +G+      SMI+ +GI+        
Sbjct: 468 LKPDGVTFIGVLSACS------------RAGLVEKGLQYFE--SMIKEHGIM-------- 505

Query: 684 THPQINEIDNMLDEMAKKLKLE 705
             P ++    ++D + +  +LE
Sbjct: 506 --PIVDHCTCIIDLLGRAGRLE 525



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 39/360 (10%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           S+L  C           +H L +K   +    L N LI  Y   G +  A  +FD     
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF-MEM 417
           +L SWN+++S Y K G + + + +F+ M  +D VSW+  ISGYA +   S+ + ++ + +
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +   +  +  T  +++  C+    +D G+ I+  I K G   +  +G+ L+DMY KLG +
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 478 DNA-------------------------------LEVFHGTEEKGVSSWNALIIGFAMNG 506
            +A                                 +F G +E+   SW  +I G   NG
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKH 565
           L  ++L+MF EM+ +G   ++ TF  VL AC  +  + EG + H   +  +H+   N   
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK--DNVFV 307

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
              +VD+  +   +K AE + + MP   +V +W A+L     +G +   E   +   E+Q
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMP-QKNVISWTAMLVG---YGQNGFSEEAVKIFFEMQ 363


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/545 (43%), Positives = 340/545 (62%), Gaps = 27/545 (4%)

Query: 255 PKKDLVSWSALISCYEQNEMYE-EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           P  D   ++ LI  + Q    +  AL  +  M  H V  ++     VL ACA +  ++ G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            +VHA  VK G E   +++N L+HMY  C +  ++                         
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSS------------------------- 281

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G V  A+ +FD    KD V+WS MI GYA+    +  ++LF EMQ  G+ PDE T+VSV+
Sbjct: 282 GPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVL 340

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SAC  L AL+ GKW+ +YI +  +  +  L   LIDM+ K G VD A++VF   + + + 
Sbjct: 341 SACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIV 400

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SW ++I+G AM+G   +++ +F EM + GV P+++ F+GVL AC H GLVD+GH +FN+M
Sbjct: 401 SWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTM 460

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
                + P  +HYGCMVD+L RAG + EA E + +MP+ P+   W +++ AC   G+ ++
Sbjct: 461 ENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKL 520

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE V ++L+  +P H+  +VLLSNI+A   RW+   +VR MM  +G+ KIPG +MIE N 
Sbjct: 521 GESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNN 580

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            I+EF+AGD++H Q  EI  M++EM +++K  GY P T +V  DID+E+KE  L+RHSEK
Sbjct: 581 EIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEK 640

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LAIAF L++  P  PIRI+KNLR+C DCH+A KFIS+ ++REIVVRDR+RFHHFK+G CS
Sbjct: 641 LAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCS 700

Query: 794 CMDFW 798
           C DFW
Sbjct: 701 CGDFW 705



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 171/350 (48%), Gaps = 57/350 (16%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQ-QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           S + F+FNT++RA+ Q    +  A+  Y  M  + V  + +T+P + +A A  + +  G 
Sbjct: 188 SHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGG 247

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVC------GDLSAARKLFDESPVLDLVSWNSILA 205
            +H  ++K GF+ D +V NTL++MY  C      G +S A+K+FDESPV D V+W++++ 
Sbjct: 248 AVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIG 306

Query: 206 GYVNADN-----------------------------------VEEAKFIYNKMPERNIIA 230
           GY  A N                                   +E  K++ + +  +NI+ 
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMR 366

Query: 231 S----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           S    N++I +F + G+V  A ++F+EM  + +VSW+++I     +    EA+++F  M+
Sbjct: 367 SVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMM 426

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAG-----TSVHALAVKIGIECYINLQNALIHMYSS 341
           +  V  D+V  + VLSAC++  +V  G     T  +  ++   IE Y      ++ M S 
Sbjct: 427 EQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHY----GCMVDMLSR 482

Query: 342 CGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            G +  A +   A     + + W S+++     G ++   ++   +I ++
Sbjct: 483 AGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRRE 532



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 143/314 (45%), Gaps = 53/314 (16%)

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF------GRKGNVAEACRLFKEMPKK 257
           L G V+A  V   KF + + P       N+++ ++      G  G V+ A ++F E P K
Sbjct: 245 LGGAVHASMV---KFGFEEDPH----VRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVK 296

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D V+WSA+I  Y +      A+ LF  M    V  DE+ +VSVLSACA+L  ++ G  + 
Sbjct: 297 DSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLE 356

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +   +  I   + L NALI M++                               KCG V+
Sbjct: 357 SYIERKNIMRSVELCNALIDMFA-------------------------------KCGDVD 385

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +A  +F  M  + +VSW++MI G A H +  E + +F EM   G+ PD+   + V+SAC+
Sbjct: 386 RAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACS 445

Query: 438 HLVALDQGKWIHAYIR--KNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGV 492
           H   +D+G   H Y    +N   I   +     ++DM  + G V+ ALE       E   
Sbjct: 446 HSGLVDKG---HYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQ 502

Query: 493 SSWNALIIGFAMNG 506
             W +++      G
Sbjct: 503 VIWRSIVTACHARG 516



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 44/229 (19%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F ESP  +   ++ M+  Y +     +A+ L++ M    V  D  T   +  A A   ++
Sbjct: 290 FDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGAL 349

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
             GK +  ++ +      V + N LI+M+A CGD+  A K+F E  V  +VSW S++ G 
Sbjct: 350 ELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGL 409

Query: 208 VNADNVEEAKFIYNKMPERNIIASN----------------------------------- 232
                  EA  ++++M E+ +   +                                   
Sbjct: 410 AMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPK 469

Query: 233 -----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS-CYEQNEM 274
                 M+ +  R G V EA    + MP + + V W ++++ C+ + E+
Sbjct: 470 IEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGEL 518


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/819 (33%), Positives = 439/819 (53%), Gaps = 83/819 (10%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           +L      L+KC   +SF   T +  ++  + L  D+   + LI   +    + + +   
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKAT--- 121

Query: 86  KIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            IF  + S    I ++ M+  +   N+  +A+  +  M+ N    + Y +    +A +  
Sbjct: 122 SIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTA 181

Query: 145 LSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNS 202
             V  G  I   V+K G+  SDV V   LI+M+    GDL +A K+F++ P  + V+W  
Sbjct: 182 EFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTL 241

Query: 203 ILAGYVNADNVEEAKFIYNKM------PERNIIA------SNSMIVLFGRK--------- 241
           ++   +      EA  ++ +M      P+R  ++      +N  ++L G++         
Sbjct: 242 MITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG 301

Query: 242 ---------------------GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY-EEAL 279
                                G++  A ++F ++   ++ SW+A+I+ Y Q   Y EEAL
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEAL 361

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            LF  MI   V+ +     S L ACANL  ++ G  V   AVK+G              +
Sbjct: 362 DLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG--------------F 407

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           SS   +                  NS+IS Y + G ++ AR  FD + EK+++S++T+I 
Sbjct: 408 SSVNCVA-----------------NSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            YA++    E L LF E++  G+     T  S++S    +  + +G+ IHA + K+GLK+
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  +   LI MY + G +++A +VF   E++ V SW ++I GFA +G A ++LE+F +M 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           + GV PN +T++ VL AC H+GLV+EG +HF SM  EH + P  +HY CMVD+LGR+G L
Sbjct: 571 EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSL 630

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            EA + I SMP   D   W   LGAC+ HG+ E+G+   + ++E +P     ++LLSN++
Sbjct: 631 SEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLY 690

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           AS  +WD+V  +R  M  + ++K  GCS +E    +H+F  GD +HP+  EI + L  ++
Sbjct: 691 ASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLS 750

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            K+K  GY P+   V  D+++E+KE  LF+HSEK+A+AFGLI+ S   PIR+ KNLRIC 
Sbjct: 751 VKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICG 810

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH+A K+IS A  REI+VRD +RFHH K G CSC ++W
Sbjct: 811 DCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/558 (23%), Positives = 255/558 (45%), Gaps = 81/558 (14%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNT 171
            +AI   + M++     D  TY L  +   +R   F+ G L+H+ + ++    D    N+
Sbjct: 48  HKAISTLEHMVHQGSHPDLQTYSLFLK-KCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 172 LINMYAVCGDLSAARKLFD-ESPVLDLVSWNSILAGYVN-----------ADNVEEAKF- 218
           LI++Y+ CG    A  +F       DL+SW+++++ + N            D +E   + 
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 219 ----------------------------IYNKMPERNIIASNSMIVLFGR-KGNVAEACR 249
                                       +     + ++     +I +F + +G++  A +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F++MP+++ V+W+ +I+   Q     EA+ LF+ MI      D   +  V+SACAN+ +
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSC---GEITTAEKLFDAGHNLDLISWNSM 366
           +  G  +H+ A++ G+     +   LI+MY+ C   G +  A K+FD   + ++ SW +M
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 367 ISGYL-KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           I+GY+ K G  E+A  LF  MI   V+                               P+
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVI-------------------------------PN 375

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T  S + AC +L AL  G+ +  +  K G    + +  +LI MY + G +D+A + F 
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD 435

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
              EK + S+N +I  +A N  ++++LE+F+E++  G+  +  TF  +L     +G + +
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G +  ++ + +  L+ N      ++ +  R G ++ A ++ E M    +V +W +++   
Sbjct: 496 GEQ-IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGF 553

Query: 606 KKHGDHEMGERVGRKLVE 623
            KHG       +  K++E
Sbjct: 554 AKHGFATQALELFHKMLE 571


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 398/712 (55%), Gaps = 76/712 (10%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKL 188
           D++T+P L +A+    S  +   +H   L+ G    +V+ + +L++ Y   G ++ A ++
Sbjct: 68  DSFTFPPLVRAAPGPASAAQ---LHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRV 124

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------- 231
           FDE P  D+ +WN++L+G        +A  +  +M    +                    
Sbjct: 125 FDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDR 184

Query: 232 ----------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                 N++I ++G+ G + EA  +F  M  +DLV+W+++IS  
Sbjct: 185 ALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISAN 244

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           EQ      A+ LF  M++  V  D + +VS+ SA A         SVH         CY+
Sbjct: 245 EQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVH---------CYV 295

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
                               + +D G   D+I+ N+M+  Y K   ++ A+ +FD + ++
Sbjct: 296 R------------------RRGWDVG---DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR 334

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWI 448
           DVVSW+T+I+GY Q+   +E + ++ +M +H G++P + T VSV+ A ++L  L QG  +
Sbjct: 335 DVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM 394

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           HA   K GL ++  + T LID+Y K G +  A+ +F     +    WNA+I G  ++G  
Sbjct: 395 HALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHG 454

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
            K+L +FS+M++  + P+ +TFV +L AC H GLVD+G   F+ M   + + P +KHY C
Sbjct: 455 AKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTC 514

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           MVD+LGRAG L EA E I+SMP+ PD A WGALLGAC+ HG+ EMG+   + L EL P++
Sbjct: 515 MVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN 574

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT--HP 686
            G++VL+SN++A  G+WD V  VR ++ R+ + K PG S +E  G +  F +G +T  HP
Sbjct: 575 VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHP 634

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  EI   L ++  K+K  GY PD   V  D++++EKE  L  HSE+LAIAFG+I   P 
Sbjct: 635 QHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPG 694

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P+ I KNLR+C DCH+A K+IS+  +REI+VRD +RFHHFK G CSC DFW
Sbjct: 695 TPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 44/225 (19%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD--NYTYPLLAQASAL 143
           K+F  L   +   +NT++  Y+Q  +  +AI +Y  M +N+ G+     T+  +  A + 
Sbjct: 326 KVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDM-HNHEGLKPIQGTFVSVLPAYSY 384

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              + +G  +H   +K G + DVYV   LI++YA CG L  A  LF+  P      WN+I
Sbjct: 385 LGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAI 444

Query: 204 LAGYVNADNVEEAKFIYNKMPERNI----------IASNS-------------------- 233
           +AG     +  +A  ++++M +  I          +A+ S                    
Sbjct: 445 IAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYG 504

Query: 234 ----------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                     M+ + GR G + EA    + MP K D   W AL+ 
Sbjct: 505 IVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLG 549


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/819 (33%), Positives = 439/819 (53%), Gaps = 83/819 (10%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           +L      L+KC   +SF   T +  ++  + L  D+   + LI   +    + + +   
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKAT--- 121

Query: 86  KIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            IF  + S    I ++ M+  +   N+  +A+  +  M+ N    + Y +    +A +  
Sbjct: 122 SIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTA 181

Query: 145 LSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNS 202
             V  G  I   V+K G+  SDV V   LI+M+    GDL +A K+F++ P  + V+W  
Sbjct: 182 EFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTL 241

Query: 203 ILAGYVNADNVEEAKFIYNKM------PERNIIA------SNSMIVLFGRK--------- 241
           ++   +      EA  ++  M      P+R  ++      +N  ++L G++         
Sbjct: 242 MITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG 301

Query: 242 ---------------------GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY-EEAL 279
                                G++  A ++F ++   ++ SW+A+I+ Y Q   Y EEAL
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEAL 361

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            LF  MI   V+ +     S L ACANL  ++ G  V   AVK+G              +
Sbjct: 362 DLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG--------------F 407

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           SS   +                  NS+IS Y + G ++ AR  FD + EK+++S++T+I 
Sbjct: 408 SSVNCVA-----------------NSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            YA++    E L LF E++  G+     T  S++S    +  + +G+ IHA + K+GLK+
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  +   LI MY + G +++A +VF   E++ V SW ++I GFA +G A ++LE+F +M 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           + GV PNE+T++ VL AC H+GLV+EG +HF SM  EH + P  +HY C+VD+LGR+G L
Sbjct: 571 EEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSL 630

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            EA + I SMP   D   W   LGAC+ HG+ E+G+   + ++E +P     ++LLSN++
Sbjct: 631 SEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLY 690

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           AS  +WD+V  +R  M  + ++K  GCS +E    +H+F  GD +HP+  EI + L  ++
Sbjct: 691 ASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLS 750

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            K+K  GY P+   V  D+++E+KE  LF+HSEK+A+AFGLI+ S   PIR+ KNLRIC 
Sbjct: 751 VKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICG 810

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH+A K+IS A  REI+VRD +RFHH K G CSC ++W
Sbjct: 811 DCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/572 (23%), Positives = 261/572 (45%), Gaps = 81/572 (14%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
            +AI   + M++     D  TY L  +      S   G L+H+ + ++    D    N+L
Sbjct: 48  HKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSL 107

Query: 173 INMYAVCGDLSAARKLFD-ESPVLDLVSWNSILAGYVN-----------ADNVEEAKF-- 218
           I++Y+ CG    A  +F       DL+SW+++++ + N            D +E   +  
Sbjct: 108 ISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 219 ---------------------------IYNKMPERNIIASNSMIVLFGR-KGNVAEACRL 250
                                      I     + ++     +I +F + +G++  A ++
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F++MP+++ V+W+ +I+   Q     EA+ LF++MI      D   +  V+SACAN+ ++
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSC---GEITTAEKLFDAGHNLDLISWNSMI 367
             G  +H+ A++ G+     +   LI+MY+ C   G +  A K+FD   + ++ SW +MI
Sbjct: 288 LLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 368 SGYL-KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           +GY+ K G  E+A  LF  MI   V+                               P+ 
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVI-------------------------------PNH 376

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T  S + AC +L AL  G+ +  +  K G    + +  +LI MY + G +D+A + F  
Sbjct: 377 FTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK + S+N +I  +A N  ++++LE+F+E++  G+  +  TF  +L     +G + +G
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  ++ + +  L+ N      ++ +  R G ++ A ++ E M    +V +W +++    
Sbjct: 497 EQ-IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFA 554

Query: 607 KHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           KHG       +  K++E  ++P+   +  +LS
Sbjct: 555 KHGFATQALELFHKMLEEGVRPNEVTYIAVLS 586


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/800 (34%), Positives = 414/800 (51%), Gaps = 73/800 (9%)

Query: 39  KCQSFKQF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF 97
           KC     F TQ+ +  + TGL  D F A+ L+        F++ +      A  E  N  
Sbjct: 111 KCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGF-GFVDEARMVFDEAGCER-NTV 168

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
            +N +M AY++ +    A+ ++  M+   V  + + +  +  A      +  G+ +H  V
Sbjct: 169 SWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMV 228

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA- 216
           ++ G+D DV+  N L++MY+  GD+  A  +F + P  D+VSWN+ ++G V   + + A 
Sbjct: 229 IRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHAL 288

Query: 217 ----------------------------------KFIYNKMPERNIIASN----SMIVLF 238
                                             + I+  M + N  + N     ++ ++
Sbjct: 289 ELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMY 348

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            + G + +A ++F  +P++DLV W+ALIS       + EAL LF  M      V+   + 
Sbjct: 349 AKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLA 408

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           +VL + A+L  +     VHALA K+G      L ++ +                      
Sbjct: 409 AVLKSTASLEAISDTRQVHALAEKLGF-----LSDSHV---------------------- 441

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                N +I  Y KC  +  A  +F+     D++++++MI+  +Q D   + + LFMEM 
Sbjct: 442 ----VNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEML 497

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G+ PD   L S+++AC  L A +QGK +HA++ K     +   G  L+  Y K G ++
Sbjct: 498 RKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIE 557

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           +A   F G  EKGV SW+A+I G A +G   ++L++F  M    ++PN IT   VL AC 
Sbjct: 558 DADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACN 617

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H GLVDE  R+FNSM +   +E   +HY CM+DLLGRAG L +A EL+ SMP   + A W
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVW 677

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           GALL A + H D E+G     KL  L+P+  G HVLL+N +AS G WDDV +VR +M   
Sbjct: 678 GALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDS 737

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            V K P  S +E    +H F+ GD++HP+  +I   LDE+   +   GY P+      D+
Sbjct: 738 KVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDV 797

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           D+ EKE  L  HSE+LA+AF LI+     PIR+ KNLRIC DCH A KFIS    REI++
Sbjct: 798 DKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIII 857

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF+ G+CSC D+W
Sbjct: 858 RDINRFHHFRDGACSCRDYW 877



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 141/638 (22%), Positives = 276/638 (43%), Gaps = 83/638 (13%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L T     QS  Q   I + ++ +GL A  F    L  +S   LP      + ++F  + 
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGLFA-VFRNHLLSFYSKCRLP----GSARRVFDEIP 64

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
            P    +++++ AY    +P+ A+  ++ M + +V  + +  P++ + +        G  
Sbjct: 65  DPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP---DAGFGTQ 121

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNSILAGYVNAD 211
           +H   +  G   D++V N L+ MY   G +  AR +FDE+    + VSWN +++ YV  D
Sbjct: 122 LHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKND 181

Query: 212 NVEEAKFIYNKMP---------------------------------------ERNIIASN 232
               A  ++ +M                                        ++++  +N
Sbjct: 182 RCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTAN 241

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ ++ + G++  A  +F ++P+ D+VSW+A IS    +   + AL L + M    ++ 
Sbjct: 242 ALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVP 301

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +   + S+L ACA       G  +H   VK   +    +   L+ MY+  G +  A+K+F
Sbjct: 302 NVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVF 361

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     DL+ WN++ISG                             S  AQH   +E LS
Sbjct: 362 DWIPQRDLVLWNALISG----------------------------CSHGAQH---AEALS 390

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF  M+  G   +  TL +V+ +   L A+   + +HA   K G   +S +   LID Y 
Sbjct: 391 LFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYW 450

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K  C++ A  VF       + ++ ++I   +     + ++++F EM + G+ P+      
Sbjct: 451 KCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSS 510

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC  +   ++G +  ++ + + +   +      +V    + G +++A+     +P  
Sbjct: 511 LLNACASLSAYEQG-KQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-E 568

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
             V +W A++G   +HG  +    V  ++V+  + P+H
Sbjct: 569 KGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNH 606


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/649 (38%), Positives = 370/649 (57%), Gaps = 62/649 (9%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H  ++ +G  SD +++N L+N+Y+ CG L  A  LF                    
Sbjct: 71  GKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLF-------------------- 110

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                        MP +NI++ N +I  + R G+   A ++F EMP++++ +W+A+++  
Sbjct: 111 -----------GVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGL 159

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            Q E  EE L LF  M +   + DE  + SVL  CA L  + AG  VH    K G E  +
Sbjct: 160 IQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNL 219

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            + ++L HMY                               +KCGS+ +   L  AM  +
Sbjct: 220 VVVSSLAHMY-------------------------------MKCGSLGEGERLIRAMPSQ 248

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           +VV+W+T+I+G AQ+    E L  +  M+  G RPD+ T VSVIS+C+ L  L QG+ IH
Sbjct: 249 NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIH 308

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           A + K G  +   + ++LI MY + GC++ +L+VF   E   V  W+++I  +  +G   
Sbjct: 309 AEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGV 368

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           +++++F++M++  +  N++TF+ +L AC H GL ++G + F+ M++++ ++P  +HY CM
Sbjct: 369 EAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCM 428

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VDLLGR G ++EAE LI SMP+  DV TW  LL ACK H   EM  R+  ++  L P   
Sbjct: 429 VDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDP 488

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             +VLLSNIHAS  RWDDV +VR  M  R + K PG S +E    IH+F  GD++HP+  
Sbjct: 489 VPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSV 548

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           EI + L E+  ++K  GY PD   V  D+D E+KE +L  HSEKLAIAF L+      PI
Sbjct: 549 EIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPI 608

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R++KNLR+C+DCH A K+IS   +REI+VRD  RFHHFK+G CSC D+W
Sbjct: 609 RVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 2/310 (0%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L +C +   +  G  +H+L +  G      + N L+++YS CG++ TA  LF      +
Sbjct: 58  LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKN 117

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           ++S N +I+GY + G    AR +FD M E++V +W+ M++G  Q +   E L LF  M  
Sbjct: 118 IMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE 177

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G  PDE  L SV+  C  L AL  G+ +H Y+RK G + N ++ ++L  MYMK G +  
Sbjct: 178 LGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGE 237

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
              +      + V +WN LI G A NG  ++ L+ ++ MK +G  P++ITFV V+ +C  
Sbjct: 238 GERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSE 297

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +  + +G +    +I+       S     ++ +  R G L+ + ++      + DV  W 
Sbjct: 298 LATLGQGQQIHAEVIKAGASLIVSV-ISSLISMYSRCGCLEYSLKVFLECE-NGDVVCWS 355

Query: 600 ALLGACKKHG 609
           +++ A   HG
Sbjct: 356 SMIAAYGFHG 365



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 155/348 (44%), Gaps = 45/348 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNYTYPLLAQASAL 143
           K+F  +   N   +N M+   IQ    ++ + L+  M  N +G   D +    + +  A 
Sbjct: 139 KMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRM--NELGFLPDEFALGSVLRGCAG 196

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++  G+ +H +V K GF+ ++ V ++L +MY  CG L    +L    P  ++V+WN++
Sbjct: 197 LRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 204 LAGYVNADNVEEAKFIYNKM------PER----NIIAS---------------------- 231
           +AG       EE    YN M      P++    ++I+S                      
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA 316

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  +S+I ++ R G +  + ++F E    D+V WS++I+ Y  +    EA+ LF  
Sbjct: 317 SLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQ 376

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCG 343
           M   ++  ++V  +S+L AC++  + + G     L V K G++  +     ++ +    G
Sbjct: 377 MEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYG 436

Query: 344 EITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            +  AE L  +     D+I+W +++S        E AR + + +   D
Sbjct: 437 SVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLD 484


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/687 (36%), Positives = 391/687 (56%), Gaps = 58/687 (8%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNKMPER 226
           N + I+ Y   GD+  ARK+FD +P+    + SWN++++ Y  +    +A  ++++MP+R
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR 81

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM--- 283
           N ++ N MI  + + G VA+A ++F  MP++++VSW++++  Y Q  M EEA  LF    
Sbjct: 82  NTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP 141

Query: 284 --NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN----------- 330
             N++   VM+  ++  S +     L  +     V  +   IG  C +            
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDE 201

Query: 331 -------LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE------ 377
                      ++  Y+  G +  A KLF+     + +SW +M+ GY + G ++      
Sbjct: 202 MKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELF 261

Query: 378 -------------------------KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                                    +AR +F+ M E+D  +W+ MI  + +     E L 
Sbjct: 262 EAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALG 321

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF  MQ  G+  +  +++SV+S C  L +LD G+ +HA + ++    +  + + LI MY+
Sbjct: 322 LFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYV 381

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +  A  +F+    K V  WN++I G++ +GL +++L +F +M  SGV P+E+TF+G
Sbjct: 382 KCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIG 441

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC + G V EG   F +M   +++EP  +HY CMVDLLGRAG + EA EL+E MPM 
Sbjct: 442 VLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPME 501

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PD   WGALLGAC+ H   ++ E    KL +L+P + G +VLLS+++A+KGRW DV  +R
Sbjct: 502 PDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLR 561

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
             + RR V+K PGCS IE    +H F  GD ++HP+ + I  ML++++  L+  GY PD 
Sbjct: 562 KKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDG 620

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+D+EEK  +L  HSE+LA+A+GL+ +    PIR+MKNLR+C DCH+A K I++ 
Sbjct: 621 SFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKV 680

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REI++RD +RFHHFK GSCSC DFW
Sbjct: 681 TGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 215/489 (43%), Gaps = 104/489 (21%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N   + +M+R Y+Q  + ++A  L+  M   NV     ++ ++        
Sbjct: 104 KVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLKES 159

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + + K + D +     + DV V   +I  Y   G L  AR+LFDE  V ++ +W ++++
Sbjct: 160 RIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVS 215

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------IIASNSM 234
           GY     V+ A+ ++  MPERN                               I+A N M
Sbjct: 216 GYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEM 275

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I+ FG  G +  A  +F+ M ++D  +W+A+I  +E+  +  EAL LF  M    V ++ 
Sbjct: 276 ILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNF 335

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             ++SVLS CA+L  +  G  VHA  V+   +  + + + LI MY  CG++  A+ +F+ 
Sbjct: 336 PSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNR 395

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               D++ WNSMI+G                               Y+QH    E L++F
Sbjct: 396 FLFKDVVMWNSMITG-------------------------------YSQHGLGEEALNVF 424

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M   G++PDE T + V+SAC++   + +G                       +++  +
Sbjct: 425 HDMCSSGVQPDEVTFIGVLSACSYSGKVKEG----------------------FEIFEAM 462

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
            C            E G+  +  ++      G  D+++E+  +M    + P+ I +  +L
Sbjct: 463 KCTYQV--------EPGIEHYACMVDLLGRAGRVDEAMELVEKMP---MEPDAIVWGALL 511

Query: 535 GACR-HMGL 542
           GACR HM L
Sbjct: 512 GACRNHMKL 520



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 41/229 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           EM  +  +F  ++  +   +N M++ + ++ +  +A+ L+  M    V ++  +   +  
Sbjct: 284 EMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLS 343

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   S+  G+ +H  ++++ FD D+YV + LI MY  CGDL  A+ +F+     D+V 
Sbjct: 344 VCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVM 403

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PER----NIIASNS---------------- 233
           WNS++ GY      EEA  +++ M      P+      ++++ S                
Sbjct: 404 WNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMK 463

Query: 234 --------------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                         M+ L GR G V EA  L ++MP + D + W AL+ 
Sbjct: 464 CTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLG 512


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/765 (35%), Positives = 411/765 (53%), Gaps = 66/765 (8%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA- 142
           ++K+F  +   +   +N+++ A  +    + AI  ++LML       ++T   +A A + 
Sbjct: 66  AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN 125

Query: 143 --LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
              R  ++ GK IH    + G     + NN L+ MYA  G L  A+ L       DLV+W
Sbjct: 126 LRKRDGLWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTW 184

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PE----------------------------- 225
           NS+++ +   +   EA      M      P+                             
Sbjct: 185 NSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALR 244

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 N    ++++ ++   G V     +F  +  + +  W+A+I+ Y Q+E  E+AL+
Sbjct: 245 TDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALM 304

Query: 281 LFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
           LF+ M     +  +   + S++ A      +     +H   +K G+E    LQNALI MY
Sbjct: 305 LFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMY 364

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           S  G+I T++++FD+  + D++SWN++I+ Y+ CG    A  L   M  + +   ST   
Sbjct: 365 SRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEM--QRIEEKSTYDG 422

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y    Q                +P+  TL++V+  C  L AL +GK IHAY  +N L  
Sbjct: 423 DYNDEKQVP-------------FKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLAS 469

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
              +G+ L+DMY K GC++ A  VF     + V +WN +I+ + M+G   +SLE+F +M 
Sbjct: 470 QVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMV 529

Query: 520 KSG-----VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
             G     V P E+TF+ +  +C H G+VDEG   F+ M  EH +EP   HY C+VDL+G
Sbjct: 530 AEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVG 589

Query: 575 RAGMLKEAEELIESMPMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           RAG ++EA  L+ +MP   D V  W +LLGAC+ + + E+GE     L++LQPD    +V
Sbjct: 590 RAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYV 649

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI++S G WD  + +R  M   GV K PGCS IE    +H+FLAGD +HPQ  ++ +
Sbjct: 650 LLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHD 709

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            L+ ++++LK EGY PDT  V  DID+EEKET L  HSEKLAIAFG++   P   IR+ K
Sbjct: 710 FLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAK 769

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+CNDCHTA+KFIS+  DREI++RD  RFHHFK G+CSC D+W
Sbjct: 770 NLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 145/550 (26%), Positives = 250/550 (45%), Gaps = 96/550 (17%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS--DVYVNNTLINMYAVC 179
           M+ +    DN+ +P + +A A    ++ GK IH HV K G+ S   V ++NTL+NMY  C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS-- 231
           G L  A K+FD     D VSWNSI++     +  E A   +  M      P    + S  
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 232 ---------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                            N+++ ++ + G + +A  L      +D
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           LV+W+++IS + QNE + EAL+    M+   V  D V   SVL AC++L +++ G  +HA
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 319 LAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
            A++    IE    + +AL+ MY +CG++ +   +FD+  +  +  WN+MI+GY +    
Sbjct: 241 YALRTDDVIENSF-VGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQ---- 295

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATLVSVISA 435
                                    ++HD+  + L LF+EM+   G+  +  T+ S++ A
Sbjct: 296 -------------------------SEHDE--KALMLFIEMEAAAGLYSNATTMSSIVPA 328

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
                 + + + IH Y+ K GL+ N  L   LIDMY ++G +  +  +F   E++ + SW
Sbjct: 329 YVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSW 388

Query: 496 NALIIGFAMNGLADKSLEMFSEM----------------KKSGVTPNEITFVGVLGACRH 539
           N +I  + + G +  +L +  EM                K+    PN IT + VL  C  
Sbjct: 389 NTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCAS 448

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +  + +G +  ++    + L         +VD+  + G L  A  + + MP+  +V TW 
Sbjct: 449 LSALAKG-KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWN 506

Query: 600 ALLGACKKHG 609
            ++ A   HG
Sbjct: 507 VIIMAYGMHG 516



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 20  AKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI 79
           A  ++     +S +     +C+   +   I   +I  GL  + +  + LI   + +    
Sbjct: 312 AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMG--- 368

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL------------YKLMLNNNV 127
           ++  S +IF  +E  +   +NT++ +Y+       A+ L            Y    N+  
Sbjct: 369 DIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEK 428

Query: 128 GV----DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
            V    ++ T   +    A   ++ +GK IH + ++    S V V + L++MYA CG L+
Sbjct: 429 QVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLN 488

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGN 243
            AR++FD+ P+ ++++WN I+  Y      +E+  ++  M                    
Sbjct: 489 LARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDM-------------------- 528

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           VAE  +  +  P +  V++ AL +    + M +E L LF  M
Sbjct: 529 VAEGAKGGEVKPTE--VTFIALFASCSHSGMVDEGLSLFHKM 568


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/804 (33%), Positives = 418/804 (51%), Gaps = 76/804 (9%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
            Q+C   +      Q+   +I  G   + +  + LIK  +      E   + +IF  +E+
Sbjct: 64  FQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTE---ARQIFDSVEN 120

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
                +N ++  Y Q    ++A  L++ M++  +     T+  +  A +    +  GK +
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEV 180

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  V+ AGF SD  +   L++MY   G +  AR++FD   + D+ ++N ++ GY  + + 
Sbjct: 181 HAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240

Query: 214 EEAKFIYNKM---------------------PER------------------NIIASNSM 234
           E+A  ++ +M                     PE                   +I  + S+
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSL 300

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I ++   G++  A R+F  M  +D+VSW+ +I  Y +N   E+A  LF  M +  +  D 
Sbjct: 301 IRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDR 360

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           +  + +++ACA    +     +H+     G    + +  AL+HMY+              
Sbjct: 361 ITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYA-------------- 406

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            KCG+++ AR +FDAM  +DVVSWS MI  Y ++   +E    F
Sbjct: 407 -----------------KCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETF 449

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             M+   I PD  T +++++AC HL ALD G  I+    K  L  +  LG  LI M  K 
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKH 509

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G V+ A  +F     + V +WNA+I G++++G A ++L +F  M K    PN +TFVGVL
Sbjct: 510 GSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVL 569

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC   G VDEG R F  +++   + P  K YGCMVDLLGRAG L EAE LI+SMP+ P 
Sbjct: 570 SACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPT 629

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + W +LL AC+ HG+ ++ ER   + + + P     +V LS+++A+ G W++V +VR +
Sbjct: 630 SSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKV 689

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RG+ K  GC+ IE  G +H F+  DR+HP + EI   L  +   +K EGY P T  V
Sbjct: 690 MESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNV 749

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+ +++KE  +  HSEKLAIA+G++++    PIRI KNLR+C+DCH+A+KFIS+   R
Sbjct: 750 LHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGR 809

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+ RD  RFHHFK G CSC D+W
Sbjct: 810 EIIARDASRFHHFKDGVCSCGDYW 833



 Score =  219 bits (559), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 253/522 (48%), Gaps = 74/522 (14%)

Query: 129 VDNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
           +D+ TY  L  + + LR +   GK + DH+++ G   ++Y  NTLI +Y++CG+++ AR+
Sbjct: 55  IDSRTYVKLFQRCTELRDAAL-GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQ 113

Query: 188 LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS---------------- 231
           +FD      +V+WN+++AGY    +V+EA  ++ +M +  +  S                
Sbjct: 114 IFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAG 173

Query: 232 -----------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                                   +++ ++ + G++ +A ++F  +  +D+ +++ ++  
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           Y ++  +E+A  LF  M    +  +++  +S+L  C     +  G +VHA  +  G+   
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           I +  +LI MY++CG I  A ++FD     D++SW  MI GY + G++E A         
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDA--------- 344

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
                                   LF  MQ  GI+PD  T + +++AC     L+  + I
Sbjct: 345 ----------------------FGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREI 382

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H+ +   G   + ++ T L+ MY K G + +A +VF     + V SW+A+I  +  NG  
Sbjct: 383 HSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYG 442

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
            ++ E F  MK+S + P+ +T++ +L AC H+G +D G   +   I+   L  +      
Sbjct: 443 TEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKAD-LVSHVPLGNA 501

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           ++ +  + G ++ A  + ++M +  DV TW A++G    HG+
Sbjct: 502 LIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGN 542



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 153/284 (53%), Gaps = 9/284 (3%)

Query: 336 IHMYSSCGEITTA-------EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + ++  C E+  A       + +   G  L++   N++I  Y  CG+V +AR +FD++  
Sbjct: 61  VKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVEN 120

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           K VV+W+ +I+GYAQ     E  +LF +M   G+ P   T +SV+ AC+    L+ GK +
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEV 180

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           HA +   G   +  +GT L+ MY+K G +D+A +VF G   + VS++N ++ G+A +G  
Sbjct: 181 HAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +K+ E+F  M++ G+ PN+I+F+ +L  C     +  G +  ++      L  + +    
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG-KAVHAQCMNAGLVDDIRVATS 299

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ +    G ++ A  + ++M +  DV +W  ++    ++G+ E
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIE 342


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/589 (40%), Positives = 349/589 (59%), Gaps = 37/589 (6%)

Query: 246 EACRLFKEMPKKD--LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +A  LFKE  + D  L   ++LI  Y    +  EA++L++ M+   V  +      VLS 
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C  +     G  VH   VK+G+E  + +QN LIH Y+ CG +    K+F+     +++SW
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 364 NSMISGY-----------------------------LKCGSVEKARALFDAMIEKDVVSW 394
            S+I GY                             +KCG+++ A+ LFD  +++++V +
Sbjct: 201 TSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 260

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-----WIH 449
           +T++S YA+     E L++  EM   G RPD  T++S ISA   LV L  GK     W+H
Sbjct: 261 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVH 320

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            YI KNG+  +  L T L+DM+ + G   +A++VF+   E+ VS+W A I   AM G  +
Sbjct: 321 TYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGE 380

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            +  +F++M   GV P+ + FV VL AC H G V++G  H  S++++H + P  +HYGCM
Sbjct: 381 GATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG-LHIFSLMEDHGISPQIEHYGCM 439

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VDLLGRAG+L+EA +LI+SMPM P+   WG+LL AC+ H + EM      ++ EL P   
Sbjct: 440 VDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRA 499

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G HVLLSNI+AS G+W DV  VR  +  +GV K+PG S ++ NG+IHEF +GD +HP++ 
Sbjct: 500 GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMT 559

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
            I  ML EM  +    G+ PD   V  D+D++EKE  L RHSEKLAIAFGLI      PI
Sbjct: 560 HIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPI 619

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R++KNLR+C+DCH+ AK  S  ++REI+VRD +RFH F+ G CSC D+W
Sbjct: 620 RVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 203/413 (49%), Gaps = 16/413 (3%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           P    S L   L+ C++  Q  Q+  Q+   GL       ++L+    ++     + Y+ 
Sbjct: 21  PMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 86  KIFAFLE----SPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           K F   +    S +  F+ N+++R Y    + ++AI LY  ML   V  ++YT+P +   
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +  EG  +H  V+K G + DV++ N LI+ YA CG +    K+F+     ++VSW
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
            S++ GY   D  +EA  ++ +M   N +  N+++ ++ + G +  A RLF E   ++LV
Sbjct: 201 TSLICGYARGDRPKEAVSLFFEM--LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 258

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT-----VVKAGTS 315
            ++ ++S Y +  +  EAL +   M+      D V ++S +SA A L       V  G  
Sbjct: 259 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYW 318

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VH    K GI C + L  AL+ M++ CG+  +A ++F+     D+ +W + I      G+
Sbjct: 319 VHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGN 378

Query: 376 VEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            E A  LF+ M    ++ DVV +  +++  +   Q  + L +F  M+ HGI P
Sbjct: 379 GEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISP 431



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 23/233 (9%)

Query: 375 SVEKARALFDAMIEKDVVS------WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           S++ AR  F+ + ++DV S       +++I GY+      E + L++ M   G+ P+  T
Sbjct: 75  SLDYARKAFE-LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYT 133

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
              V+S CT + A  +G  +H  + K GL+ +  +   LI  Y + G +D+  +VF G  
Sbjct: 134 FPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           E+ V SW +LI G+A      +++ +F EM       N++    ++      G +D   R
Sbjct: 194 ERNVVSWTSLICGYARGDRPKEAVSLFFEML------NKVMVNALVDMYMKCGAIDAAKR 247

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA----EELIESMPMSPDVAT 597
            F+  +     + N   Y  ++    R G+ +EA    +E+++  P  PD  T
Sbjct: 248 LFDECV-----DRNLVLYNTILSNYARQGLAREALAILDEMLQQGP-RPDRVT 294



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 95/379 (25%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           K  +F +  Q+   ++  GL  D F  + LI F  +      M +  K+F  +   N   
Sbjct: 143 KIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAEC---GHMDHGHKVFEGMSERNVVS 199

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++  Y + + P++A+ L+  MLN                                  
Sbjct: 200 WTSLICGYARGDRPKEAVSLFFEMLNK--------------------------------- 226

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
                    + N L++MY  CG + AA++LFDE    +LV +N+IL+ Y       EA  
Sbjct: 227 --------VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALA 278

Query: 219 IYNKM------PERNIIAS--------------------------------------NSM 234
           I ++M      P+R  + S                                       ++
Sbjct: 279 ILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTAL 338

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + +F R G+   A ++F +M ++D+ +W+A I         E A  LF  M+   V  D 
Sbjct: 339 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 398

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V+ V VL+AC++   V+ G  + +L    GI   I     ++ +    G +  A   FD 
Sbjct: 399 VLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREA---FDL 455

Query: 355 GHNLDL----ISWNSMISG 369
             ++ +    + W S+++ 
Sbjct: 456 IKSMPMEPNDVVWGSLLAA 474


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/498 (44%), Positives = 322/498 (64%), Gaps = 6/498 (1%)

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DL 360
           SAC+ L     G+ VHALAVK G    + ++NAL+H Y   G++    ++FD    + D+
Sbjct: 159 SACSFL-----GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN +++GY++ G +  AR +FD M  +D +SWST++ GY + ++    L +F  M   
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+RP++A +V+ +SA   L  L+ GK++H  ++++G+ +   +G  L+DMY K GCV  A
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            EVF G   + V +WNA+I G A +GL   ++E+F      G++P  +TFVGVL  C   
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV EG R+F  +++++R+EP  +HYGCMVDLLGRAG++ EA ELIE M ++PD   WG 
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           +L +CK HG  ++G  VG KL+EL P H G++VLLS I+A   +WD+V EVR +M  RG 
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K  G S++EA+G +H+FL GD  H    +I + LD + K+L   GY PD   V  DI +
Sbjct: 514 NKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGE 573

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK   +  HSE+LAIA+G I +   +PIRI+KNLR+C DCH  +K ++  F REI+VRD
Sbjct: 574 EEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633

Query: 781 RHRFHHFKHGSCSCMDFW 798
             RFHH K G CSC+D+W
Sbjct: 634 GSRFHHMKEGKCSCLDYW 651



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 138/582 (23%), Positives = 234/582 (40%), Gaps = 131/582 (22%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP-------------F 78
           +L   L    + +Q  Q  +++ + GL A   A   L+     LLP              
Sbjct: 34  LLAALLPPSPTVRQVQQAHARLAVLGLAASR-AMPHLLAVLPRLLPDKPRHRGDDGGGDG 92

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--------VGVD 130
              +Y   +F    S + F  N ++R  +   +P   + L+      N          + 
Sbjct: 93  DHYAYPLALFRRANSTSAFASNNLLRV-LPHPLP---LTLFSRFRRRNPHSFTFLLASIS 148

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           N+       ASA     F G  +H   +KAG   D++V N L++ Y V GD+ A R++FD
Sbjct: 149 NHLNAAGPSASACS---FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFD 205

Query: 191 ESP-VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           E P V D+++WN +LAGYV                               R G +  A  
Sbjct: 206 ELPRVRDVLTWNEVLAGYV-------------------------------RAGMMTVARE 234

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F EMP +D +SWS L+  Y + E  E AL +F NM++  V  ++  VV+ LSA A L +
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  VH +  + G+   +N+  AL+ MY+ CG +  A ++FD     D+ +WN+M   
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAM--- 351

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                       I G A H    + + LF      G+ P   T 
Sbjct: 352 ----------------------------ICGLAAHGLGRDAVELFERFISEGLSPTNVTF 383

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           V V++ C+    + +G ++    + K  ++        ++D+  + G V  A+E+  G  
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMH 443

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
                                             + P+ + +  +L +C+  GLVD G  
Sbjct: 444 ----------------------------------IAPDPVLWGTILSSCKTHGLVDLGVS 469

Query: 549 HFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
             N +I+   L+P +S +Y  +  +  +A    E  E+ + M
Sbjct: 470 VGNKLIE---LDPTHSGYYVLLSGIYAKANKWDEVREVRKLM 508


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/728 (35%), Positives = 401/728 (55%), Gaps = 79/728 (10%)

Query: 114 QAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           +A CL   +L  N G+  D++   L+  A+       + K IH  +L  G     ++   
Sbjct: 3   EASCLASPLLYTNSGIHSDSFYASLIDSAT----HKAQLKQIHARLLVLGLQFSGFLITK 58

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+  +  GD++ AR++FD+ P   +  WN+I+ GY   ++ ++A  +Y+ M        
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           + ++   N +I L+ +   +  A  +F+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE 178

Query: 253 --EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
              +P++ +VSW+A++S Y QN    EAL +F  M    V  D V +VSVL+A   L  +
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           K G S+HA  VK+G+E   +L                            LIS N+M   Y
Sbjct: 239 KQGRSIHASVVKMGLEIEPDL----------------------------LISLNTM---Y 267

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            KCG V  A+ LFD M   +++ W+ MISGYA++    E + +F EM +  +RPD  ++ 
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S ISAC  + +L+Q + ++ Y+ ++  + +  + + LIDM+ K G V+ A  VF  T ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V  W+A+I+G+ ++G A +++ ++  M++ GV PN++TF+G+L AC H G+V EG   F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           N M  +H++ P  +HY C++DLLGRAG L +A E+I+ MP+ P V  WGALL ACKKH  
Sbjct: 448 NRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            E+GE   ++L  + P + G +V LSN++A+   WD V EVR  M  +G+ K  GCS +E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
             G +  F  GD++HP+  EI+  ++ +  +LK  G+  +      D++ EE E TL  H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SE++AIA+GLI+     P+RI KNLR C +CH A K IS+  DREIVVRD +RFHHFK G
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 791 SCSCMDFW 798
            CSC D+W
Sbjct: 687 VCSCGDYW 694



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 233/497 (46%), Gaps = 76/497 (15%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI +++++ GL    F  ++LI  S+    F +++++ ++F  L  P  F +N ++R
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSS---FGDITFARQVFDDLPRPQIFPWNAIIR 92

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y + N  Q A+ +Y  M    V  D++T+P L +A +    +  G+ +H  V + GFD+
Sbjct: 93  GYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDA 152

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNK 222
           DV+V N LI +YA C  L +AR +F+  P+ +  +VSW +I++ Y       EA  I+++
Sbjct: 153 DVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQ 212

Query: 223 M------PE--------------------RNIIASN-------------SMIVLFGRKGN 243
           M      P+                    R+I AS              S+  ++ + G 
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           VA A  LF +M   +L+ W+A+IS Y +N    EA+ +F  MI+  V  D + + S +SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA +  ++   S++    +      + + +ALI M++ CG +  A  +FD   + D++ W
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVW 392

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           ++MI G                               Y  H +  E +SL+  M+  G+ 
Sbjct: 393 SAMIVG-------------------------------YGLHGRAREAISLYRAMERGGVH 421

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P++ T + ++ AC H   + +G W    +  + +         +ID+  + G +D A EV
Sbjct: 422 PNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEV 481

Query: 484 FHGTE-EKGVSSWNALI 499
                 + GV+ W AL+
Sbjct: 482 IKCMPVQPGVTVWGALL 498



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 128/276 (46%), Gaps = 43/276 (15%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100
           Q  KQ   I + ++  GL         LI  +T      +++ +  +F  ++SPN  ++N
Sbjct: 236 QDLKQGRSIHASVVKMGL---EIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
            M+  Y +    ++AI ++  M+N +V  D  +      A A   S+ + + ++++V ++
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY------------- 207
            +  DV++++ LI+M+A CG +  AR +FD +   D+V W++++ GY             
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 208 -------VNADN---------------VEEAKFIYNKMPERNIIASNS----MIVLFGRK 241
                  V+ ++               V E  + +N+M +  I         +I L GR 
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRA 472

Query: 242 GNVAEACRLFKEMPKKDLVS-WSALISCYEQNEMYE 276
           G++ +A  + K MP +  V+ W AL+S  +++   E
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/550 (43%), Positives = 345/550 (62%), Gaps = 6/550 (1%)

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMI----DHRVMVDEVVVVSVLSACANLTVV 310
           P   +  W+ +I  Y +    +E + LF+ M+      +V+ DE     V+++C++   +
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
             G  VH + VK G E  + + N++I+M S    +  A K+F+     D+ SW S++ GY
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEATL 429
            K G +++A  LF+ M  ++ VSW+ MISG+    ++ E L+ F  M     + P+EA L
Sbjct: 255 AKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVL 314

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           V V+SAC HL ALDQG WIH YI K G++ +S + T LIDMY K G +D A  VF+G  +
Sbjct: 315 VCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICK 374

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V S+ ++I G + +GL   +L +F +M    V PNEIT +GVL  C H GLV+EG   
Sbjct: 375 RDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSI 434

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             +M     + P  +HYGC +DLLGRAG L+ A E++++MPM PD+  W ALL A + H 
Sbjct: 435 LANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHH 494

Query: 610 DHEMGERVGRKLVELQP-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
           +  +GE++   + +L+  DH+G  VLLSN++AS GRW+ V E+R +MV R     PGCS 
Sbjct: 495 NVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSW 554

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE NG++HEF   D+ HPQI EI N L+E+ K+L   GY+ +T++V+FD+++EEKE  + 
Sbjct: 555 IEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVA 614

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLAIAFGL++  P   IRI+KNLR C DCH+A K IS+ + REIVVRDR RFH F 
Sbjct: 615 WHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFI 674

Query: 789 HGSCSCMDFW 798
            G CSC DFW
Sbjct: 675 EGDCSCKDFW 684



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN----VGVDNYTYPLLAQASALRLSVF 148
           SP   ++N M+R Y +    Q+ I L+  ML  +    V  D YT+  +  + + ++S+ 
Sbjct: 136 SPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLI 195

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            G+++H  V+K+GF+S++YV N++INM +V   +  ARK+F++    D+ SW S+L GY 
Sbjct: 196 YGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYA 255

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
               ++ A  ++N MP RN                                VSW+ +IS 
Sbjct: 256 KHGEMDRACELFNMMPVRND-------------------------------VSWAVMISG 284

Query: 269 YEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
           +     Y EAL  F NM+ D RV  +E V+V VLSACA+L  +  G  +H    KIGI  
Sbjct: 285 FLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQ 344

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
             N+  ALI MY+ CG I  A ++F+     D++S+ SMI                    
Sbjct: 345 SSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMI-------------------- 384

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
                      SG + H    + L +F +M    + P+E T++ V++ C+H   +++G  
Sbjct: 385 -----------SGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433

Query: 448 IHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           I A +    G+          ID+  + G ++ ALEV      E  +  W AL+
Sbjct: 434 ILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALL 487


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/714 (35%), Positives = 396/714 (55%), Gaps = 63/714 (8%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALR 144
           ++F  + + +   +N+++ AY  R    Q++  Y LML N    ++      +   ++ +
Sbjct: 96  RVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQ 155

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             V  G  +H HV+K GF S V+V + L++MY+  G +  AR+ FDE             
Sbjct: 156 GCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDE------------- 202

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                             MPE+N++  N++I    R   + ++ +LF +M +KD +SW+A
Sbjct: 203 ------------------MPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTA 244

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+ + QN +  EA+ LF  M    + +D+    SVL+AC  +  ++ G  VHA  ++  
Sbjct: 245 MIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD 304

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  I + +AL+ MY                                KC S++ A  +F 
Sbjct: 305 YQDNIFVGSALVDMYC-------------------------------KCKSIKSAETVFR 333

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  K+VVSW+ M+ GY Q+    E + +F +MQ++GI PD+ TL SVIS+C +L +L++
Sbjct: 334 KMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEE 393

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H     +GL     +   L+ +Y K G ++++  +F         SW AL+ G+A 
Sbjct: 394 GAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQ 453

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A+++L +F  M   G  P+++TF+GVL AC   GLV +G++ F SMI+EHR+ P   
Sbjct: 454 FGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIED 513

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DL  RAG L+EA + I  MP SPD   W +LL +C+ H + E+G+     L++L
Sbjct: 514 HYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKL 573

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P +   ++LLS+I+A+KG+W++V  +R  M  +G+ K PGCS I+    +H F A D++
Sbjct: 574 EPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQS 633

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           +P  ++I + L+++  K+  EGY PD   V  D+D  EK   L  HSEKLAIAFGLI I 
Sbjct: 634 NPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIP 693

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P  PIR++KNLR+C DCH A K+IS+   REI+VRD  RFH FK G CSC DFW
Sbjct: 694 PGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 181/389 (46%), Gaps = 50/389 (12%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S ++F  ++  +   +  M+  + Q  + ++AI L++ M   N+ +D YT+  +  A   
Sbjct: 227 SRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGG 286

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            +++ EGK +H ++++  +  +++V + L++MY  C  + +A  +F +    ++VSW ++
Sbjct: 287 VMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAM 346

Query: 204 LAGYVNADNVEEAKFIYNKMPERN------------------------------------ 227
           L GY      EEA  I+  M                                        
Sbjct: 347 LVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 406

Query: 228 ---IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
              I  SN+++ L+G+ G++ ++ RLF EM   D VSW+AL+S Y Q     E L LF +
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFES 466

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK----IGIECYINLQNALIHMYS 340
           M+ H    D+V  + VLSAC+   +V+ G  +    +K    I IE   +    +I ++S
Sbjct: 467 MLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIE---DHYTCMIDLFS 523

Query: 341 SCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWST 396
             G +  A K  +    + D I W S++S      ++E  +   +++++    +  S+  
Sbjct: 524 RAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYIL 583

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           + S YA   ++ E  +L   M+  G+R +
Sbjct: 584 LSSIYAAKGKWEEVANLRKGMRDKGLRKE 612



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 157/351 (44%), Gaps = 44/351 (12%)

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C  L   +    +H   +K      I L N L+  Y+    IT A ++FD     +L SW
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-- 421
           N+++S Y K   + +   +F AM  +D+VSW+++IS YA      +++  +  M ++G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 422 ----IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
               I      +++    C HL     G  +H ++ K G +    +G+ L+DMY K G V
Sbjct: 139 NLNRIALSTMLILASKQGCVHL-----GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 478 -------------------------------DNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                                          +++ ++F+  +EK   SW A+I GF  NG
Sbjct: 194 FCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L  +++++F EM+   +  ++ TF  VL AC  +  + EG +  ++ I     + N    
Sbjct: 254 LDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG-KQVHAYIIRTDYQDNIFVG 312

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
             +VD+  +   +K AE +   M    +V +W A+L    ++G  E   ++
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMN-CKNVVSWTAMLVGYGQNGYSEEAVKI 362


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/763 (34%), Positives = 413/763 (54%), Gaps = 75/763 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + ++F  + +P+   +N ++RAY        AI LY+ ML   V  + YT+P + +
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +  + +  G+ IH H   AG  +D++V+  LI++Y  C     AR +F + P+ D+V+
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 200 WNSILAGYVN-----------------ADNVEEAKFIYNKMP------------------ 224
           WN++LAGY N                       A  + + +P                  
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 225 --------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                   E  ++   +++ ++ +   +  ACR+F  MP ++ V+WSALI  +   +   
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMT 288

Query: 277 EALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EA  LF +M ++    +    V S L  CA+L  +  GT +HAL  K GI   +   N+L
Sbjct: 289 EAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSL 348

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+  G I  A   FD     D IS+ +++SG ++ G  E                  
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE------------------ 390

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                        E   +F +MQ   + PD AT+VS+I AC+HL AL  GK  H  +   
Sbjct: 391 -------------EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR 437

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           GL + + +  +LIDMY K G +D + +VF     + V SWN +I G+ ++GL  ++  +F
Sbjct: 438 GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLF 497

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK  G  P+++TF+ ++ AC H GLV EG   F++M  ++ + P  +HY CMVDLL R
Sbjct: 498 LGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G+L EA + I+SMP+  DV  WGALLGAC+ H + ++G++V R + +L P+  G  VLL
Sbjct: 558 GGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI ++ GR+D+  EVR +   +G  K PG S IE NG +H F+ GD++HP   +I + L
Sbjct: 618 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHEL 677

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           D +   +K  GY  DT  V  D+++EEKE  L  HSEKLAIAFG+++++    I + KNL
Sbjct: 678 DNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 737

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCHTA K+++   +R I+VRD +RFHHFK+G CSC +FW
Sbjct: 738 RVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 185/394 (46%), Gaps = 40/394 (10%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +G +A A ++F  +P  D  +++ALI  Y     +  A+ L+ +M+  RV  ++     V
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFV 106

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC+ L  ++AG ++HA A   G+   + +  ALI +Y  C     A  +F      D+
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN+                               M++GYA H  +   ++  ++MQ H
Sbjct: 167 VAWNA-------------------------------MLAGYANHGMYHHAIAHLLDMQDH 195

Query: 421 -GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS---ILGTTLIDMYMKLGC 476
            G+RP+ +TLVS++       AL QG  IHAY  +  L+ N    ++GT L+DMY K   
Sbjct: 196 GGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQ 255

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG-VLG 535
           +  A  VFHG   +   +W+ALI GF +     ++  +F +M   G+     T V   L 
Sbjct: 256 LVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C  +  +  G    +++I +  +  +      ++ +  +AG++ EA    + + +  D 
Sbjct: 316 VCASLADLHMG-TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DT 373

Query: 596 ATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
            ++GALL  C ++G  E    V +K+    ++PD
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 6/250 (2%)

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D   W   +  ++  G +  AR +FD +   D  +++ +I  Y+    F   + L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              + P++ T   V+ AC+ LV L  G+ IHA+    GL  +  + T LID+Y++     
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGAC 537
            A  VF     + V +WNA++ G+A +G+   ++    +M+   G+ PN  T V +L   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHY---GCMVDLLGRAGMLKEAEELIESMPMSPD 594
              G + +G    ++      LE N +       ++D+  +   L  A  +   MP+  D
Sbjct: 213 AQHGALFQG-TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND 271

Query: 595 VATWGALLGA 604
           V TW AL+G 
Sbjct: 272 V-TWSALIGG 280


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/764 (33%), Positives = 435/764 (56%), Gaps = 50/764 (6%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
           TQ  ++++ +G   D + +++LI   ++   F +      +   +  P  + F++++ A 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADL---VLQSIPDPTIYSFSSLIYAL 91

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSD 165
            +  +  Q+I ++  M ++ +  D++  P L +  A  LS F+ GK IH     +G D D
Sbjct: 92  TKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCA-ELSAFKVGKQIHCVSCVSGLDMD 150

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
            +V  ++ +MY  CG +  ARK+FD                               +M +
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFD-------------------------------RMSD 179

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEEALVL 281
           ++++  ++++  + RKG + E  R+  EM     + ++VSW+ ++S + ++  ++EA+V+
Sbjct: 180 KDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVM 239

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI---ECYINLQNALIHM 338
           F  +       D+V V SVL +  +  ++  G  +H   +K G+   +C I+   A+I M
Sbjct: 240 FQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVIS---AMIDM 296

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSW 394
           Y   G +     LF+    ++    N+ I+G  + G V+KA  +F+   E+    +VVSW
Sbjct: 297 YGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSW 356

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           +++I+G AQ+ +  E L LF EMQ  G++P+  T+ S++ AC ++ AL  G+  H +  +
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             L  N  +G+ LIDMY K G ++ +  VF+    K +  WN+L+ GF+M+G A + + +
Sbjct: 417 VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSI 476

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  + ++ + P+ I+F  +L AC  +GL DEG ++F  M +E+ ++P  +HY CMV+LLG
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLG 536

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG L+EA +LI+ MP  PD   WGALL +C+   + ++ E    KL  L+P++ G +VL
Sbjct: 537 RAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVL 596

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A+KG W +V  +R  M   G+ K PGCS I+    ++  LAGD++HPQI++I   
Sbjct: 597 LSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEK 656

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           +DE++K+++  G+ P+      D++++E+E  L+ HSEKLA+ FGL+      P++++KN
Sbjct: 657 MDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKN 716

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LRIC DCH   KFIS    REI +RD +RFHHFK G CSC DFW
Sbjct: 717 LRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760


>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 287/838 (34%), Positives = 450/838 (53%), Gaps = 122/838 (14%)

Query: 16  SSVNAKPIFKPTINLSI-LETH------LQKCQSFKQFTQILSQMILTGLIADTFAASRL 68
           SS  +  I++P+   S  L +H      L+K  S  Q  QI +Q++  GL  +T     L
Sbjct: 34  SSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPL 93

Query: 69  IKFSTDLLPFIEMSYSFKIF-AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN- 126
           I      +    +S++  +F  F   P   I+N M++AY +    Q+++ L+  ML +  
Sbjct: 94  IH---SYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGR 150

Query: 127 -VGVDNYTYPLLAQASALRLSVF-EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
               D YT+  +  A +   ++   G+ +H  V+K G++SD++V N+L+NMY++   +  
Sbjct: 151 PTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVD 210

Query: 185 ARKLFDESPVLDLVSWNSILAGY-VNADNVEEAKFIYNKM-------------------- 223
           A+++FDE P  D+++W S++ GY +  +   EA   +N M                    
Sbjct: 211 AKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSAC 270

Query: 224 -----------------PERNIIASN---SMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                              R +++SN   ++I ++ + G +  A R+F  + K+DL++W+
Sbjct: 271 AHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWT 330

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           ++IS    + +  E L  F  M+      D++ ++ VL+ C++  +V+    VH + VK 
Sbjct: 331 SMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEI-VHGMVVKS 389

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G E  + + N++I+M S    +                               E AR +F
Sbjct: 390 GFESNLYVGNSVINMCSVFARM-------------------------------EDARKVF 418

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSE-TLSLFMEMQ-HHGIRPDEATLVSVISACTHLVA 441
           + M E+DV SW++++ GYA+H +    +L+ F  M     + P+EA LV V+SAC HL A
Sbjct: 419 NQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 478

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           LDQG WIH YI K G++ +S + T LIDMY K G +D A  VF+G  ++ V S+ ++I G
Sbjct: 479 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISG 538

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            + +GL   +L      + S +  N  +  G+                           P
Sbjct: 539 LSYHGLGKDAL------RGSSILANMESLWGI--------------------------AP 566

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HYGC +DLLGRAG L+ A E++++MPM PD+  W ALL A + H +  +GE++   +
Sbjct: 567 KIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHI 626

Query: 622 VELQ-PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
            +L+  DH+G  VLLSN++AS GRW+ V E+R +MV R     PGCS IE NG++HEF  
Sbjct: 627 GQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRV 686

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            D+ HPQI EI N L+E+ K+L   GY+ +T++V+FD+++EEKE  +  HSEKLAIAFGL
Sbjct: 687 ADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGL 746

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++  P   IRI+KNLR C DCH+A K IS+ + REIVVRDR RFH F  G CSC DFW
Sbjct: 747 MSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 804


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/811 (33%), Positives = 415/811 (51%), Gaps = 78/811 (9%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           I+ + L   + K  +F    +  +Q+I  G   D    + + K +  L       ++  +
Sbjct: 6   ISRNTLLALISKACTFPHLAETHAQLIRNGYQHDL---ATVTKLTQKLFDVGATRHARAL 62

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK-LMLNNNVGVDNYTYPLLAQASALRLS 146
           F  +  P+ F+FN +++ +   +    +I  Y  L+ N  +  DN+TY     AS     
Sbjct: 63  FFSVPKPDIFLFNVLIKGF-SFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP---D 118

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G  +H H +  GFDS+++V + L+++Y     ++ ARK+FD+ P  D V WN+++ G
Sbjct: 119 DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITG 178

Query: 207 YVNADNVEEAKFIYNKMPERNI------IAS----------------------------- 231
            V     +++  ++  M  + +      +A+                             
Sbjct: 179 LVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFD 238

Query: 232 ----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
                 +I +F +  +V  A  LF  + K DLVS++ALIS +  N   E A+  F  ++ 
Sbjct: 239 DYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLV 298

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
               V    +V ++   +    +     +    VK G     ++  AL  +YS   EI  
Sbjct: 299 SGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDL 358

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A +LFD      + +WN+MISGY + G  E A                            
Sbjct: 359 ARQLFDESSEKTVAAWNAMISGYAQSGLTEMA---------------------------- 390

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              +SLF EM      P+  T+ S++SAC  L AL  GK +H  I+   L+ N  + T L
Sbjct: 391 ---ISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTAL 447

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G +  A ++F  T EK   +WN +I G+ ++G  D++L++F+EM   G  P+ 
Sbjct: 448 IDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSS 507

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF+ VL AC H GLV EG   F++M+ ++R+EP ++HY CMVD+LGRAG L++A E I 
Sbjct: 508 VTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIR 567

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP+ P  A WG LLGAC  H D  +      +L EL P + G++VLLSNI++ +  +  
Sbjct: 568 KMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPK 627

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
              VR  + +R + K PGC++IE NG  H F+ GDR+H Q   I   L+E+  K++  GY
Sbjct: 628 AASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGY 687

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
             +T+    D+++EEKE     HSEKLAIAFGLIT  P   IRI+KNLR+C DCH A KF
Sbjct: 688 QSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKF 747

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+  +R IVVRD +RFHHFK G CSC D+W
Sbjct: 748 ISKITERVIVVRDANRFHHFKDGICSCGDYW 778


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 355/596 (59%), Gaps = 44/596 (7%)

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           +++GY+     + A+ +++KMPER++ + N M+  + R  ++  A  LF+ MP++D+VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +A++S Y QN   +EA  +F  M                                   +K
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKM----------------------------------PLK 86

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            GI       N L+  Y   G I  A++LF++  +  L+SWN ++ G+     V K R L
Sbjct: 87  NGIS-----WNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGF-----VRKRRNL 136

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M ++D +SWS MI+GY+Q+    E L  F+EMQ    R + ++    +S C+++ AL
Sbjct: 137 FDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAAL 196

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           + G+ +H  + K G +    +G  L+ MY K G +D A + F    EK V SWN +I G+
Sbjct: 197 ELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGY 256

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           A +G  +++L +F  MK +G+ P++ T V VL AC H GLVD+G  +F SM +++ +   
Sbjct: 257 ARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAK 316

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
             HY CMVDLLGRAG L+EA+ L+++MP  PD ATWGALLGA + HG+ E+GE+  + + 
Sbjct: 317 LVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIF 376

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           E++P + G ++LLS ++A+ GRW D  ++R  M  +GV K+PG S +E    IH F  GD
Sbjct: 377 EMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGD 436

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
            +HP  ++I   L+EM  KLK EGY   T  V  D+++EEK   L  HSEKLA+A+G++ 
Sbjct: 437 TSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILY 496

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I    PIR++KNLR+C DCH A K+IS+   R I++RD HRFH+F+ GSCSC DFW
Sbjct: 497 IPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  186 bits (472), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 204/379 (53%), Gaps = 31/379 (8%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           +I+ Y        AR LFD+ P  DL SWN +L GYV   +++ A+ ++ +MPER+I++ 
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID---- 287
           N+M+  + + G V EA  +F +MP K+ +SW+ L++ Y QN   E+A  LF + +D    
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 288 ------------HRVMVDEVVVVSVLSACANLT-VVKAGTSVHALA--VKIGIECYINLQ 332
                        R + D +     +S  A +    + G S  AL   V++  +C    +
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 333 NALIHMYSSCGEITTAE-------KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           ++     S+C  I   E       +L  AG+       N++++ Y KCGS+++AR  F  
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           ++EKDVVSW+TMI GYA+H    E L++F  M+  GIRPD+AT+VSV++AC+H   +DQG
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG 300

Query: 446 -KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFA 503
            ++ ++  R  G+    +  T ++D+  + G ++ A  +      E   ++W AL+    
Sbjct: 301 SEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASR 360

Query: 504 MNG---LADKSLEMFSEMK 519
           ++G   L +K+ ++  EM+
Sbjct: 361 IHGNTELGEKAAQIIFEME 379



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 46/247 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   ++ M+  Y Q    ++A+  +  M  +   ++  ++   A ++   ++
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTC-ALSTCSNIA 194

Query: 147 VFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
             E G+ +H  ++KAG+ +  YV N L+ MY  CG +  AR  F E    D+VSWN+++ 
Sbjct: 195 ALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIH 254

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNS-------------------------------- 233
           GY      EEA  ++  M    I   ++                                
Sbjct: 255 GYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGIT 314

Query: 234 --------MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMYEEALVL 281
                   M+ L GR G + EA  L K MP + D  +W AL+     +   E+ E+A  +
Sbjct: 315 AKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQI 374

Query: 282 FMNMIDH 288
              M  H
Sbjct: 375 IFEMEPH 381


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/751 (34%), Positives = 405/751 (53%), Gaps = 70/751 (9%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   F T++  Y Q N   +A  L+  +      ++ + +  + +       
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+++H  VLK G+ S+ ++   LI+ Y+V G +S AR++FDE    D+VSW  ++A 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
           Y   D   EA   +++M                                        ER+
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +     ++ L+ R G+  +A R F +MPK D++ WS +IS + Q+   E+AL +F  M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V+ ++    SVL A A++  +    ++H  A+K                         
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK------------------------- 276

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                 AG + D+   N++++ Y KCG +E++  LF+A+ +++ VSW+T+I  Y Q    
Sbjct: 277 ------AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              LSLF  M  + ++  E T  S++ AC  L AL+ G  +H    K     +  +G  L
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNAL 390

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G + +A  +F   + +   SWNA+I G++M+GL  ++++MF+ MK++   P+E
Sbjct: 391 IDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDE 450

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TFVGVL AC + G +DEG ++F SM Q++ +EP  +HY CMV L+GR+G L +A + IE
Sbjct: 451 LTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIE 510

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            +P  P V  W ALLGAC  H D E+G    ++++EL+P  +  HVLLSNI+A   RW +
Sbjct: 511 DIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGN 570

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR  M R+GV K PG S IE  G +H F   D +H  +  I+ ML+ +  K +  GY
Sbjct: 571 VAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGY 630

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
           +P    V  D++ +EKE  L+ HSE+LA+AFGL+ +    PIRI+KNLRIC DCH+  K 
Sbjct: 631 SPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKL 690

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+   R+I+VRD +RFHHF++GSCSC D+W
Sbjct: 691 ISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 42/233 (18%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S ++F  L   N   +NT++ +Y+Q    ++A+ L+  ML   V     TY  + +A A 
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++  G  +H    K  +  DV V N LI+MYA CG +  AR +FD   + D VSWN+I
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAI 421

Query: 204 LAGY-----------------------------------VNADNVEEAKFIYNKMPERNI 228
           + GY                                    N   ++E K  +  M +   
Sbjct: 422 ICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYG 481

Query: 229 IAS-----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SCYEQNEM 274
           I         M+ L GR GN+ +A +  +++P +  ++ W AL+ +C   N++
Sbjct: 482 IEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDV 534


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 277/854 (32%), Positives = 447/854 (52%), Gaps = 119/854 (13%)

Query: 57   GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
            GL  D F  + L+   + +    ++  + ++F  +   +   +N M+    Q   P +A+
Sbjct: 159  GLERDVFIGAGLVDMYSKM---GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 117  CLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFE-GKLIHDHVLKAGFDSDVYVNNTLIN 174
              ++ M    VGV+  +  LL     + +LS  E  + IH +V +  F S V  +N LI+
Sbjct: 216  DFFRSM--QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLID 271

Query: 175  MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------- 224
            +Y+ CGD+  AR++FD+    D VSW +++AGY +     E   +++KM           
Sbjct: 272  LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 225  -----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                         + +I+ +  ++V++ + G   +A +LF  + 
Sbjct: 332  AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 256  KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
             +DLV+WSA+I+   Q    EEAL LF  M + ++  + V ++S+L ACA+L+++K G S
Sbjct: 392  GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 316  VHALAVKIGIECYINL-------------------------------QNALIHMYSSCGE 344
            +H   VK  ++  ++                                 N+LI+ Y+  G+
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 345  ITTAEKLF----------DAG---------------------HNL--------DLISWNS 365
               A  +F          DAG                     H L        D    N+
Sbjct: 512  PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 366  MISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            +I  Y KCGS+  A  LF+     KD V+W+ +I+ Y Q+    E +S F +M+     P
Sbjct: 572  LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631

Query: 425  DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
            +  T VSV+ A  +L A  +G   HA I + G   N+++G +LIDMY K G +D + ++F
Sbjct: 632  NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLF 691

Query: 485  HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            +  + K   SWNA++ G+A++G  D+++ +FS M++S V  + ++FV VL ACRH GLV+
Sbjct: 692  NEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVE 751

Query: 545  EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            EG + F+SM  ++ ++P+ +HY CMVDLLGRAG+  E    I+ MP+ PD   WGALLG+
Sbjct: 752  EGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGS 811

Query: 605  CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
            C+ H + ++GE     LV+L+P +    V+LS+I+A  GRW D  + R  M   G+ K P
Sbjct: 812  CRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP 871

Query: 665  GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
            GCS +E    +H F  GD++HPQ+  +  + + + +K++  GY PD   V  ++++E+KE
Sbjct: 872  GCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKE 931

Query: 725  TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
              L+ HSE+LAI F L+   P + I+I+KNLR+C DCHT  KFIS+   R I+VRD  RF
Sbjct: 932  MFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRF 991

Query: 785  HHFKHGSCSCMDFW 798
            HHF+ G CSC D+W
Sbjct: 992  HHFEDGICSCNDYW 1005



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/610 (26%), Positives = 289/610 (47%), Gaps = 73/610 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C+      QI +Q+I++G      + + LI   +    F +   +  +F    +P+ 
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYS---LFHKCDLARSVFDSTPNPSR 94

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            ++N+M+RAY +     +A+ +Y  M+   +  D YT+  + +A    L++ EG   H  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD----- 211
           + + G + DV++   L++MY+  GDL  AR++FD+ P  D+V+WN+++AG   ++     
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 212 ------------------------------NVEEAKFIYNKMPERNIIA--SNSMIVLFG 239
                                         N+E  + I+  +  R+  +  SN +I L+ 
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYS 274

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G+V  A R+F +M  +D VSW  +++ Y  N  + E L LF  M    V +++V  VS
Sbjct: 275 KCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVS 334

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
              A A    ++ G  +H  A++  I+  I +   L+ MY+ CGE   A++LF      D
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L++W+++I+  ++ G  E                               E LSLF EMQ+
Sbjct: 395 LVAWSAIIAALVQTGYPE-------------------------------EALSLFQEMQN 423

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             ++P+  TL+S++ AC  L  L  GK IH +  K  +  +   GT L+ MY K G    
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           AL  F+    + + +WN+LI G+A  G    +++MF +++ S + P+  T VGV+ AC  
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +  +D+G    + +I +   E +      ++D+  + G L  AE L      + D  TW 
Sbjct: 544 LNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602

Query: 600 ALLGACKKHG 609
            ++ A  ++G
Sbjct: 603 VIIAAYMQNG 612



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 35/363 (9%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F   P    + W+++I  Y +++ Y EAL ++  M++  +  D+     VL AC     
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G   H    + G+E  + +   L+ MYS                             
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYS----------------------------- 175

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
             K G +++AR +FD M ++DVV+W+ MI+G +Q +   E +  F  MQ  G+ P   +L
Sbjct: 176 --KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +++      L  ++  + IH Y+ +     +S +   LID+Y K G VD A  VF    +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SW  ++ G+A NG   + LE+F +MK   V  N+++ V    A      +++G   
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +Q+ R++ +      ++ +  + G  ++A++L   +    D+  W A++ A  + G
Sbjct: 352 HGCALQQ-RIDSDILVATPLMVMYAKCGETEKAKQLFWGL-QGRDLVAWSAIIAALVQTG 409

Query: 610 DHE 612
             E
Sbjct: 410 YPE 412



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 20/224 (8%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F++     + +I  G +++T   + LI          ++ YS K+F  ++  +   +N 
Sbjct: 648 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC---GQLDYSEKLFNEMDHKDTVSWNA 704

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+  Y       +AI L+ LM  + V +D+ ++  +  A      V EG+ I   +    
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM---- 760

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDES-------PV-LDLVSWNSILAGYVNADNV 213
             SD Y     +  YA   DL     LFDE+       PV  D   W ++L       NV
Sbjct: 761 --SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNV 818

Query: 214 EEAKFIYN---KMPERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
           +  +   +   K+  RN      +  ++ + G  A+A +   +M
Sbjct: 819 KLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/804 (32%), Positives = 422/804 (52%), Gaps = 76/804 (9%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
            Q+C   +      Q+   +I +G   + +  + LIK  +     +E   +F     +E+
Sbjct: 68  FQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFD---SVEN 124

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
                +N ++  Y Q    ++A  L++ M++  +     T+ ++  A +    +  GK  
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  V+K GF SD  +   L++MY   G +  AR++FD     D+ ++N ++ GY  + + 
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 214 EEAKFIYNKM------PER---------------------------------NIIASNSM 234
           E+A  ++ +M      P R                                 ++  + ++
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I ++   G++  A R+F +M  +D+VSW+ +I  Y +N   E+A  LF  M +  +  D 
Sbjct: 305 IRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDR 364

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           +  + +++ACA+   +     +H+  V+ G    + +  AL+HMY+              
Sbjct: 365 ITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYA-------------- 410

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            KCG+++ AR +FDAM  +DVVSWS MI  Y ++    E    F
Sbjct: 411 -----------------KCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETF 453

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             M+ + + PD  T +++++AC HL ALD G  I+    K  L  +  +G  LI+M +K 
Sbjct: 454 HLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKH 513

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G ++ A  +F    ++ V +WN +I G++++G A ++L++F  M K    PN +TFVGVL
Sbjct: 514 GSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVL 573

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC   G V+EG R F+ ++    + P  + YGCMVDLLGRAG L EAE LI  MP+ P+
Sbjct: 574 SACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPN 633

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + W  LL AC+ +G+ ++ ER   + +  +P     +V LS+++A+ G W++V +VR +
Sbjct: 634 SSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKV 693

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RGV K  GC+ IE  G +H F+  DR+HPQ  EI   L  +   +K EGY P T  V
Sbjct: 694 MESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNV 753

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             ++ ++EKE  +  HSEKLAIA+G++++    PIRI KNLR+C DCH+A+KFIS+   R
Sbjct: 754 LHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGR 813

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+ RD  RFHHFK+G CSC D+W
Sbjct: 814 EIIARDASRFHHFKNGVCSCGDYW 837



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 246/521 (47%), Gaps = 72/521 (13%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +D+ TY  L Q   +      GK + DH++++G   ++Y  NTLI ++++CG++  AR+ 
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT 118

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIA-------------- 230
           FD      +V+WN+I+AGY    +V+EA  ++ +M     E +II               
Sbjct: 119 FDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178

Query: 231 ---------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                  +++ ++ + G++  A ++F  + K+D+ +++ +I  Y
Sbjct: 179 KLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGY 238

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            ++   E+A  LF  M       + +  +S+L  C+    +  G +VHA  +  G+   +
Sbjct: 239 AKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDV 298

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            +  ALI MY  CG I  A ++FD     D++SW  MI GY +  ++E A          
Sbjct: 299 RVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDA---------- 348

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                                  LF  MQ  GI+PD  T + +I+AC     L   + IH
Sbjct: 349 ---------------------FGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIH 387

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           + + + G   + ++ T L+ MY K G + +A +VF     + V SW+A+I  +  NG  +
Sbjct: 388 SQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGE 447

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++ E F  MK++ V P+ +T++ +L AC H+G +D G   +   I+   L  +      +
Sbjct: 448 EAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD-LVSHIPVGNAL 506

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +++  + G ++ A  + E+M +  DV TW  ++G    HG+
Sbjct: 507 INMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN 546



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T V +   C  L     GK +  +I ++G ++N     TLI ++   G +  A + F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
              E K V +WNA+I G+A  G   ++  +F +M    + P+ ITF+ VL AC     + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G + F++ + +     + +    +V +  + G +  A ++ + +    DV+T+  ++G 
Sbjct: 180 LG-KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGG 237

Query: 605 CKKHGDHE 612
             K GD E
Sbjct: 238 YAKSGDGE 245


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/763 (34%), Positives = 413/763 (54%), Gaps = 75/763 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + ++F  + +P+   +N ++RAY        AI LY+ ML   V  + YT+P + +
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +  + +  G+ IH H   AG  +D++V+  LI++Y  C     AR +F + P+ D+V+
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 200 WNSILAGYVN-----------------ADNVEEAKFIYNKMP------------------ 224
           WN++LAGY N                       A  + + +P                  
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 225 --------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                   E  ++   +++ ++ +   +  ACR+F  MP ++ V+WSALI  +   +   
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMT 288

Query: 277 EALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EA  LF +M ++    +    V S L  CA+L  +  GT +HAL  K GI   +   N+L
Sbjct: 289 EAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSL 348

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+  G I  A   FD     D IS+ +++SG ++ G  E                  
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE------------------ 390

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                        E   +F +MQ   + PD AT+VS+I AC+HL AL  GK  H  +   
Sbjct: 391 -------------EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR 437

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           GL + + +  +LIDMY K G +D + +VF     + V SWN +I G+ ++GL  ++  +F
Sbjct: 438 GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLF 497

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK  G  P+++TF+ ++ AC H GLV EG   F++M  ++ + P  +HY CMVDLL R
Sbjct: 498 LGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G+L EA + I+SMP+  DV  WGALLGAC+ H + ++G++V R + +L P+  G  VLL
Sbjct: 558 GGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLL 617

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI ++ GR+D+  EVR +   +G  K PG S IE NG +H F+ GD++HP   +I + L
Sbjct: 618 SNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHEL 677

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           D +   +K  GY  DT  V  D+++EEKE  L  HSEKLAIAFG+++++    I + KNL
Sbjct: 678 DNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNL 737

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCHTA K+++   +R I+VRD +RFHHFK+G CSC +FW
Sbjct: 738 RVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 185/394 (46%), Gaps = 40/394 (10%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           +G +A A ++F  +P  D  +++ALI  Y     +  A+ L+ +M+  RV  ++     V
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFV 106

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L AC+ L  ++AG ++HA A   G+   + +  ALI +Y  C     A  +F      D+
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN+                               M++GYA H  +   ++  ++MQ H
Sbjct: 167 VAWNA-------------------------------MLAGYANHGMYHHAIAHLLDMQDH 195

Query: 421 -GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS---ILGTTLIDMYMKLGC 476
            G+RP+ +TLVS++       AL QG  IHAY  +  L+ N    ++GT L+DMY K   
Sbjct: 196 GGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQ 255

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG-VLG 535
           +  A  VFHG   +   +W+ALI GF +     ++  +F +M   G+     T V   L 
Sbjct: 256 LVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C  +  +  G    +++I +  +  +      ++ +  +AG++ EA    + + +  D 
Sbjct: 316 VCASLADLHMG-TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DT 373

Query: 596 ATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
            ++GALL  C ++G  E    V +K+    ++PD
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 6/250 (2%)

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D   W   +  ++  G +  AR +FD +   D  +++ +I  Y+    F   + L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              + P++ T   V+ AC+ LV L  G+ IHA+    GL  +  + T LID+Y++     
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGAC 537
            A  VF     + V +WNA++ G+A +G+   ++    +M+   G+ PN  T V +L   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHY---GCMVDLLGRAGMLKEAEELIESMPMSPD 594
              G + +G    ++      LE N +       ++D+  +   L  A  +   MP+  D
Sbjct: 213 AQHGALFQG-TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND 271

Query: 595 VATWGALLGA 604
           V TW AL+G 
Sbjct: 272 V-TWSALIGG 280


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 379/655 (57%), Gaps = 72/655 (10%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER------------------ 226
           A  +F  + VLD+++WNS+L  +VN++    A   Y +M ER                  
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 227 ----------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                 ++    +++ ++   G++  A  LF+ M  ++ V W++
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS Y +N    EAL+L+  M +     DEV + +++SACA L  +  G  +H+   ++ 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           ++    L +AL++MY+                               KCG ++ AR +FD
Sbjct: 211 MKICAVLGSALVNMYA-------------------------------KCGDLKTARQVFD 239

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVISACTHLVALD 443
            + +KDV +WS +I GY ++++ +E L LF E+     +RP+E T+++VISAC  L  L+
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G+W+H YI +     +  L  +LIDM+ K G +D A  +F     K + SWN+++ G A
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA 359

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           ++GL  ++L  F  M+ + + P+EITF+GVL AC H GLV EG + F  +   + +   S
Sbjct: 360 LHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HYGCMVDLL RAG+L EA E I  MP+ PD A WG++LGAC+ + + E+GE   R L+E
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLE 479

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L+P +DG ++LLSNI+A +  W++V +VR +M  +G+ K PGCS +  + I H FLAGD 
Sbjct: 480 LEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDC 539

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP+I EI  ML ++ +KLKL GY  DT EV  +ID  +KE ++ +HSEKLA+ +GL+  
Sbjct: 540 SHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKS 599

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                I I+KNLR+C+DCHT  K +S+ + R+I +RDR+RFHHFK GSCSC D+W
Sbjct: 600 EIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 228/472 (48%), Gaps = 74/472 (15%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           M++TG I    + ++LI     +   + + Y++ +FA     +   +N+M+RA++  N+P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSM-GSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMP 59

Query: 113 QQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           ++A+  Y  ML  +  V D +T+P L +  AL L    GK++H  V+K    SD+Y+  T
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--- 228
           L+NMYA CGDL +AR LF+     + V W S+++GY+      EA  +Y KM E      
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 229 ------------------------------------IASNSMIVLFGRKGNVAEACRLFK 252
                                               +  ++++ ++ + G++  A ++F 
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVK 311
           ++  KD+ +WSALI  Y +N    EAL LF  +     M  +EV +++V+SACA L  ++
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH    +      ++L N+LI M+S CG+I  A+++FD+    DLISWNS      
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNS------ 353

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                    M++G A H    E L+ F  MQ   ++PDE T + 
Sbjct: 354 -------------------------MVNGLALHGLGREALAQFHLMQTTDLQPDEITFIG 388

Query: 432 VISACTHLVALDQGKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALE 482
           V++AC+H   + +GK +   I    G+++ S     ++D+  + G +  A E
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEARE 440


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/648 (36%), Positives = 379/648 (58%), Gaps = 13/648 (2%)

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            +  A  D D +    ++++YA  GDLS A+ +FD  P   L SW ++L+ +  + + EE
Sbjct: 13  QIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEE 72

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           AK +++ M ER++IA   M+ +     N+ +A   F +MP++DLV+W+A+++   +    
Sbjct: 73  AKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQM 132

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           E A   F  M +  +        S+LSA      VKA   V     +  +  +     A+
Sbjct: 133 ENARETFDQMPERNLFS----WTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAW----TAM 184

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           +  YS  G++  A++ FD+    DLI+W +M+S Y   G +   R +F  M E+D++SW+
Sbjct: 185 LTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWA 244

Query: 396 TMISGYAQHDQFSETLSLFMEMQHH-----GIRPDEATLVSVISACTHLVALDQGKWIHA 450
           TM++   ++D   E+  LF  M  H     G+ P+  T ++++ AC+ L AL +G+ IHA
Sbjct: 245 TMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHA 304

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + + G   + ++   L++ Y + G + +A  VF G   + V SW+++I  FA  G  D+
Sbjct: 305 AVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDE 364

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E++  M   G  P++I F+ VL AC + G+V+     F S++ + ++EP  +HY CMV
Sbjct: 365 AMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMV 424

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           D+LGRAG L++AE+L+  MP  P    +  +L ACK + D E GE     + EL P++  
Sbjct: 425 DVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSS 484

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++ L+NI+++  R  D   +R +M  RG+ K PGCS IE    +HEF+AGD+ HPQ +E
Sbjct: 485 PYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDE 544

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   +  + +++K  GY  DT  V  D++++EKE  L+ HSEKLAIAFGLI+  P  P+R
Sbjct: 545 IYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLR 604

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+KNLR+C+DCH A K IS+   REI+VRD +RFHHF++G CSC D+W
Sbjct: 605 IVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 135/288 (46%), Gaps = 24/288 (8%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-----LNNNVGVDNYTYP 135
           + Y+ +IF  +   +   + TM+ A ++ ++ +++  L+  M     L+  +  +  T+ 
Sbjct: 225 LRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFI 284

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            L  A +   ++ EG+ IH  V + GFD+D+ V+N L+N Y  CG L  A+ +FD     
Sbjct: 285 TLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRR 344

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMI--VLFG--RKGNVAEACRLF 251
           D++SW+S+++ +     V+EA  +Y++M     +  + +   VLF     G V  +   F
Sbjct: 345 DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFF 404

Query: 252 KEM-----PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           + +      +  L  ++ ++    +     +A  L   M  H      ++ +++LSAC  
Sbjct: 405 RSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFH---PGPLLYMTMLSACKL 461

Query: 307 LTVVKAGTSVHALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKL 351
            T V+ G +   +  ++  E    YI L N    +YS+      A ++
Sbjct: 462 YTDVERGEAAAEVVFELDPENSSPYITLAN----IYSAAKRPKDAARI 505


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/728 (35%), Positives = 403/728 (55%), Gaps = 79/728 (10%)

Query: 114 QAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           +A CL   +L  N G+  D++   L+  A+       + K IH  +L  G     ++   
Sbjct: 3   EASCLASPLLYTNSGIHSDSFYASLIDSAT----HKAQLKQIHARLLVLGLQFSGFLITK 58

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+  +  GD++ AR++FD+ P   +  WN+I+ GY   ++ ++A  +Y+ M        
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           + ++   N +I L+ +   +  A  +F+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE 178

Query: 253 --EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
              +P++ +VSW+A++S Y QN    EAL +F +M    V  D V +VSVL+A   L  +
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           K G S+HA  VK+G+E   +L                            LIS N+M   Y
Sbjct: 239 KQGRSIHASVVKMGLEIEPDL----------------------------LISLNTM---Y 267

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            KCG V  A+ LFD M   +++ W+ MISGYA++    E + +F EM +  +RPD  ++ 
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S ISAC  + +L+Q + ++ Y+ ++  + +  + + LIDM+ K G V+ A  VF  T ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V  W+A+I+G+ ++G A +++ ++  M++ GV PN++TF+G+L AC H G+V EG   F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           N ++ +H++ P  +HY C++DLLGRAG L +A E+I+ MP+ P V  WGALL ACKKH  
Sbjct: 448 N-LMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            E+GE   ++L  + P + G +V LSN++A+   WD V EVR  M  +G+ K  GCS +E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
             G +  F  GD++HP+  EI+  ++ +  +LK  G+  +      D++ EE E TL  H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SE++AIA+GLI+     P+RI KNLR C +CH A K IS+  DREIVVRD +RFHHFK G
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 791 SCSCMDFW 798
            CSC D+W
Sbjct: 687 VCSCGDYW 694



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 232/497 (46%), Gaps = 76/497 (15%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI +++++ GL    F  ++LI  S+    F +++++ ++F  L  P  F +N ++R
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSS---FGDITFARQVFDDLPRPQIFPWNAIIR 92

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y + N  Q A+ +Y  M    V  D++T+P L +A +    +  G+ +H  V + GFD+
Sbjct: 93  GYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDA 152

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNK 222
           DV+V N LI +YA C  L +AR +F+  P+ +  +VSW +I++ Y       EA  I++ 
Sbjct: 153 DVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSH 212

Query: 223 M------PE--------------------RNIIASN-------------SMIVLFGRKGN 243
           M      P+                    R+I AS              S+  ++ + G 
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           VA A  LF +M   +L+ W+A+IS Y +N    EA+ +F  MI+  V  D + + S +SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA +  ++   S++    +      + + +ALI M++ CG +  A  +FD   + D++ W
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVW 392

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           ++MI G                               Y  H +  E +SL+  M+  G+ 
Sbjct: 393 SAMIVG-------------------------------YGLHGRAREAISLYRAMERGGVH 421

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P++ T + ++ AC H   + +G W    +  + +         +ID+  + G +D A EV
Sbjct: 422 PNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEV 481

Query: 484 FHGTE-EKGVSSWNALI 499
                 + GV+ W AL+
Sbjct: 482 IKCMPVQPGVTVWGALL 498



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 45/277 (16%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100
           Q  KQ   I + ++  GL         LI  +T      +++ +  +F  ++SPN  ++N
Sbjct: 236 QDLKQGRSIHASVVKMGL---EIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
            M+  Y +    ++AI ++  M+N +V  D  +      A A   S+ + + ++++V ++
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
            +  DV++++ LI+M+A CG +  AR +FD +   D+V W++++ GY       EA  +Y
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 221 NKMPERNIIASNS----------------------------------------MIVLFGR 240
             M ER  +  N                                         +I L GR
Sbjct: 413 RAM-ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGR 471

Query: 241 KGNVAEACRLFKEMPKKDLVS-WSALISCYEQNEMYE 276
            G++ +A  + K MP +  V+ W AL+S  +++   E
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 350/573 (61%), Gaps = 38/573 (6%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N   SN  I       ++  A R+F ++P+ D+V ++ +   Y + +    A++L   ++
Sbjct: 74  NFCTSNPTI------ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVL 127

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              ++ D+    S+L ACA L  ++ G  +H LAVK+G+   + +   LI+MY++C +  
Sbjct: 128 CSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACND-- 185

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                        V+ AR +FD + E  VV+++ +I+  A++ +
Sbjct: 186 -----------------------------VDAARRVFDKIGEPCVVAYNAIITSCARNSR 216

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E L+LF E+Q  G++P + T++  +S+C  L ALD G+WIH Y++KNG      + T 
Sbjct: 217 PNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTA 276

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G +D+A+ VF     +   +W+A+I+ +A +G   +++ M  EMKK+ V P+
Sbjct: 277 LIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPD 336

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EITF+G+L AC H GLV+EG+ +F+SM  E+ + P+ KHYGCM+DLLGRAG L+EA + I
Sbjct: 337 EITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFI 396

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           + +P+ P    W  LL +C  HG+ EM + V +++ EL   H G +V+LSN+ A  GRWD
Sbjct: 397 DELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWD 456

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           DV  +R MMV +G +K+PGCS IE N ++HEF +GD  H     + + LDE+ K+LKL G
Sbjct: 457 DVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAG 516

Query: 707 YAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           Y PDT  V + DI+ EEKE  L  HSEKLAI +GL+   P   IR++KNLR+C DCH AA
Sbjct: 517 YVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAA 576

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KFIS  F R+I++RD  RFHHFK G CSC D+W
Sbjct: 577 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 183/395 (46%), Gaps = 42/395 (10%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + KC S ++  QI +  I T     T   ++LI F T       M ++ ++F  +  P+ 
Sbjct: 42  IPKCTSLRELKQIQAYTIKTHQNNPT-VLTKLINFCTSNPTIASMDHAHRMFDKIPQPDI 100

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +FNTM R Y + + P +AI L   +L + +  D+YT+  L +A A   ++ EGK +H  
Sbjct: 101 VLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCL 160

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G   ++YV  TLINMY  C D+ AAR++FD+     +V++N+I+          EA
Sbjct: 161 AVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEA 220

Query: 217 KFIYNKMPERNIIASN---------------------------------------SMIVL 237
             ++ ++ E  +  ++                                       ++I +
Sbjct: 221 LALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDM 280

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++ +A  +FK+MP++D  +WSA+I  Y  +    +A+ +   M   +V  DE+  
Sbjct: 281 YAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITF 340

Query: 298 VSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-G 355
           + +L AC++  +V+ G    H++  + GI   I     +I +    G +  A K  D   
Sbjct: 341 LGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELP 400

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
                I W +++S     G+VE A+ +   + E D
Sbjct: 401 IKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELD 435



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 144/338 (42%), Gaps = 71/338 (21%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK------MPER------------ 226
           A ++FD+ P  D+V +N++  GY   D+   A  + ++      +P+             
Sbjct: 88  AHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACAR 147

Query: 227 ---------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                N+    ++I ++    +V  A R+F ++ +  +V+++A+
Sbjct: 148 LKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAI 207

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+   +N    EAL LF  + +  +   +V ++  LS+CA L  +  G  +H    K G 
Sbjct: 208 ITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGF 267

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           + Y+ +  ALI MY+ CG +  A  +F      D  +W                      
Sbjct: 268 DQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAW---------------------- 305

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                    S MI  YA H   S+ +S+  EM+   ++PDE T + ++ AC+H   +++G
Sbjct: 306 ---------SAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEG 356

Query: 446 -KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
            ++ H+   + G+  +      +ID+  + G ++ A +
Sbjct: 357 YEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACK 394



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 19/236 (8%)

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK---LGCV 477
            + P  ++++S+I  CT L  L Q   I AY  K      ++L T LI+       +  +
Sbjct: 30  ALEPPSSSILSLIPKCTSLRELKQ---IQAYTIKTHQNNPTVL-TKLINFCTSNPTIASM 85

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           D+A  +F    +  +  +N +  G+A      +++ + S++  SG+ P++ TF  +L AC
Sbjct: 86  DHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKAC 145

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC--MVDLLGRAGMLKEAEELIESMPMSPDV 595
             +  ++EG +     +   +L      Y C  ++++      +  A  + + +   P V
Sbjct: 146 ARLKALEEGKQLHCLAV---KLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG-EPCV 201

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNI----HASKGRW 645
             + A++ +C ++        + R+L E  L+P      V LS+         GRW
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRW 257


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/644 (38%), Positives = 387/644 (60%), Gaps = 22/644 (3%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           D ++   N L++ Y   G++  ARK+FD  P  ++VSW +++ GYV+   V+ A+ ++ K
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MPE+N ++   M++ F + G + +AC+L++ +P KD ++ +++I    +    +EA  +F
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 283 MNMIDHRVMVDEVVVVS------VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
             M +  V+    +V        V  A     V+   T V   ++ +G            
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG------------ 243

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
             Y   G I  AE+LF+      +I+ N+MISG  + G + KAR +FD+M E++  SW T
Sbjct: 244 --YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQT 301

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I  + ++    E L LF+ MQ  G+RP   TL+S++S C  L +L  GK +HA + +  
Sbjct: 302 VIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ 361

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
             ++  + + L+ MY+K G +  +  +F     K +  WN++I G+A +GL +++L++F 
Sbjct: 362 FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421

Query: 517 EMKKSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           EM  SG T PNE+TFV  L AC + G+V+EG + + SM     ++P + HY CMVD+LGR
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGR 481

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG   EA E+I+SM + PD A WG+LLGAC+ H   ++ E   +KL+E++P++ G ++LL
Sbjct: 482 AGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILL 541

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNM 694
           SN++AS+GRW DV E+R +M  R V K PGCS  E    +H F  G   +HP+   I  +
Sbjct: 542 SNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKI 601

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           LDE+   L+  GY PD      D+D+EEK  +L  HSE+LA+A+ L+ +S   PIR+MKN
Sbjct: 602 LDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKN 661

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C+DCHTA K IS+  +REI++RD +RFHHF++G CSC D+W
Sbjct: 662 LRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 209/461 (45%), Gaps = 64/461 (13%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N  I   +  G +  ARKLFD      + SWNS++AGY       +A+ ++++MP+RNII
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           + N ++  + + G + EA ++F  MP++++VSW+AL+  Y  N   + A  LF  M +  
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140

Query: 290 VMVDEVVVVSVLS------ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            +   V+++  L       AC    ++    ++               + ++IH     G
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNI--------------ARTSMIHGLCKEG 186

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +  A ++FD      +I+W +M++GY +   V+ AR +FD M EK  VSW++M+ GY Q
Sbjct: 187 RVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           + +  +   LF           E   V  + AC  ++                    S L
Sbjct: 247 NGRIEDAEELF-----------EVMPVKPVIACNAMI--------------------SGL 275

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           G        + G +  A  VF   +E+  +SW  +I     NG   ++L++F  M+K GV
Sbjct: 276 G--------QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGV 327

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P   T + +L  C  +  +  G +  ++ +   + + +      ++ +  + G L +++
Sbjct: 328 RPTFPTLISILSVCASLASLHHG-KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSK 386

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
            + +  P S D+  W +++     HG   +GE   +   E+
Sbjct: 387 LIFDRFP-SKDIIMWNSIISGYASHG---LGEEALKVFCEM 423



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 63/407 (15%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            +N  I    R G + EA +LF     K + SW+++++ Y  N M  +A  LF  M D  
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           ++                                         N L+  Y   GEI  A 
Sbjct: 79  IIS---------------------------------------WNGLVSGYMKNGEIDEAR 99

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           K+FD     +++SW +++ GY+  G V+ A +LF  M EK+ VSW+ M+ G+ Q  +  +
Sbjct: 100 KVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDD 159

Query: 410 TLSLFMEMQHHGIRPDEATL--VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              L+ EM      PD+  +   S+I        +D+ + I   + +  +    I  TT+
Sbjct: 160 ACKLY-EMI-----PDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTM 209

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +  Y +   VD+A ++F    EK   SW ++++G+  NG  + + E+F  M    V    
Sbjct: 210 VTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV---- 265

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE--- 584
           I    ++      G + +  R F+SM      E N   +  ++ +  R G   EA +   
Sbjct: 266 IACNAMISGLGQKGEIAKARRVFDSM-----KERNDASWQTVIKIHERNGFELEALDLFI 320

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           L++   + P   T  ++L  C        G++V  +LV  Q D D +
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVY 367



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 28/289 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E++ + ++F  ++  N   + T+++ + +     +A+ L+ LM    V     T+P L  
Sbjct: 280 EIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGV---RPTFPTLIS 336

Query: 140 ---ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
                A   S+  GK +H  +++  FD DVYV + L+ MY  CG+L  ++ +FD  P  D
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKD 396

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMP-----ERNIIASNSMIVLFGRKGNVAEACRLF 251
           ++ WNSI++GY +    EEA  ++ +MP     + N +   + +      G V E  +++
Sbjct: 397 IIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIY 456

Query: 252 KEMP-----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACA 305
           + M      K     ++ ++    +   + EA    M MID   V  D  V  S+L AC 
Sbjct: 457 ESMESVFGVKPITAHYACMVDMLGRAGRFNEA----MEMIDSMTVEPDAAVWGSLLGACR 512

Query: 306 NLTVVKAGTSVHALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKL 351
             + +          ++I  E    YI L N    MY+S G      +L
Sbjct: 513 THSQLDVAEFCAKKLIEIEPENSGTYILLSN----MYASQGRWADVAEL 557


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/655 (37%), Positives = 379/655 (57%), Gaps = 72/655 (10%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER------------------ 226
           A  +F  +  LD+++WNS+L  +VN++    A   Y +M ER                  
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 227 ----------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                 ++    +++ ++   G++  A  LF+ M  ++ V W++
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS Y +N    EAL+L+  M +     DEV + +++SACA L  +  G  +H+   ++ 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           ++    L +AL++MY+                               KCG ++ AR +FD
Sbjct: 211 MKICAVLGSALVNMYA-------------------------------KCGDLKTARQVFD 239

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVISACTHLVALD 443
            + +KDV +WS +I GY ++++ +E L LF E+     +RP+E T+++VISAC  L  L+
Sbjct: 240 KLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G+W+H YI +     +  L  +LIDM+ K G +D A  +F     K + SWN+++ GFA
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA 359

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           ++GL  ++L  F  M+ + + P+EITF+GVL AC H GLV EG + F  +   + +   S
Sbjct: 360 LHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HYGCMVDLL RAG+L EA E I  MP+ PD A WG++LGAC+ + + E+GE   R L++
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLK 479

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L+P +DG ++LLSNI+A +  W++V +VR +M  +G+ K PGCS +  + I H FLAGD 
Sbjct: 480 LEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDC 539

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP+I EI  ML ++ +KLKL GY  DT EV  +ID  +KE ++ +HSEKLA+ +GL+  
Sbjct: 540 SHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKS 599

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                I I+KNLR+C+DCHT  K +S+ + R+I +RDR+RFHHFK GSCSC D+W
Sbjct: 600 EIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 229/472 (48%), Gaps = 74/472 (15%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           M++TG I    + ++LI     +   + + Y++ +FA     +   +N+M+RA++  N+P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSM-GSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMP 59

Query: 113 QQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           ++A+  Y  ML  +  V D +T+P L +  AL L    GK++H  V+K    SD+Y+  T
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--- 228
           L+NMYA CGDL +AR LF+     + V W S+++GY+      EA  +Y KM E      
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 229 ------------------------------------IASNSMIVLFGRKGNVAEACRLFK 252
                                               +  ++++ ++ + G++  A ++F 
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVK 311
           ++  KD+ +WSALI  Y +N    EAL LF  +     M  +EV +++V+SACA L  ++
Sbjct: 240 KLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH    +      ++L N+LI M+S CG+I  A+++FD+    DLISWNSM     
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSM----- 354

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                     ++G+A H    E L+ F  MQ   ++PDE T + 
Sbjct: 355 --------------------------VNGFALHGLGREALAQFRLMQTTDLQPDEITFIG 388

Query: 432 VISACTHLVALDQGKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALE 482
           V++AC+H   + +GK +   I    G+++ S     ++D+  + G +  A E
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEARE 440



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLG 535
           V  A  VF  T E  V +WN+++  F  + +  ++L+ ++EM ++S   P+  TF  +L 
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C  +     G +  +  + ++ L  +      ++++    G LK A  L E M     V
Sbjct: 88  GCALLLEFKVG-KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146

Query: 596 ATWGALLGACKKHGDHE 612
                + G  K H  +E
Sbjct: 147 VWTSMISGYMKNHCPNE 163


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 393/708 (55%), Gaps = 59/708 (8%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNN---NVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           +N+++ AY+Q    + A+ +   M N+    +  D  T   +  A A   ++  GK +H 
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             ++ G   DV+V N L++MYA C  ++ A K+F+     D+VSWN+++ GY    + + 
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDS 318

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A  ++  M E +I                           K D+++WSA+I+ Y Q    
Sbjct: 319 ALSLFKMMQEEDI---------------------------KLDVITWSAVIAGYAQKGHG 351

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            EAL +F  M  + +  + V + S+LS CA++  +  G   HA  +K       N+ N  
Sbjct: 352 FEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIK-------NILN-- 402

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD--VVS 393
                    +   +K        DL+  N +I  Y KC S   AR++FD++  KD  VV+
Sbjct: 403 ---------LNWNDK------EDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVT 447

Query: 394 WSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           W+ MI GYAQH + ++ L LF ++  Q   ++P+  TL   + AC  L  L  G+ +HAY
Sbjct: 448 WTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAY 507

Query: 452 IRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
             +N  +   + +G  LIDMY K G +D A  VF   + + V SW +L+ G+ M+G  ++
Sbjct: 508 ALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEE 567

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +F +M+K G   + ITF+ VL AC H G+VD+G  +F+ M++   + P ++HY CMV
Sbjct: 568 ALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMV 627

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA ELI++M M P    W ALL A + H + E+GE    KL EL  ++DG
Sbjct: 628 DLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDG 687

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            + LLSN++A+  RW DV  +R +M   G+ K PGCS I+       F  GDR+HP+  +
Sbjct: 688 SYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQ 747

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I N+L ++ K++K  GY P T     D+D EEK   LF HSEKLA+A+G++T +P  PIR
Sbjct: 748 IYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIR 807

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLRIC DCH+A  +IS   D EIV+RD  RFHHFK GSCSC  +W
Sbjct: 808 IHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/431 (30%), Positives = 238/431 (55%), Gaps = 24/431 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQNEMYEEALVLFM 283
           N+   NS++ ++GR G + +A ++F E+ ++   D+VSW+++++ Y Q      AL +  
Sbjct: 161 NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAF 220

Query: 284 NMIDH---RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
            M +H   ++  D + +V++L ACA++  ++ G  VH  +V+ G+   + + NAL+ MY+
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYA 280

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSWST 396
            C ++  A K+F+     D++SWN+M++GY + GS + A +LF  M E+    DV++WS 
Sbjct: 281 KCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSA 340

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I+GYAQ     E L +F +MQ +G+ P+  TL S++S C  + AL  GK  HAY+ KN 
Sbjct: 341 VIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400

Query: 457 LKINS-------ILGTTLIDMYMKLGCVDNALEVFHGTE--EKGVSSWNALIIGFAMNGL 507
           L +N        ++   LIDMY K      A  +F   E  +K V +W  +I G+A +G 
Sbjct: 401 LNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGE 460

Query: 508 ADKSLEMFSEM--KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           A+ +L++F+++  +K+ + PN  T    L AC  +G +  G R  ++    +  E    +
Sbjct: 461 ANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG-RQLHAYALRNENESEVLY 519

Query: 566 YG-CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
            G C++D+  ++G +  A  + ++M +  +V +W +L+     HG  E    +  ++ +L
Sbjct: 520 VGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEEALHLFDQMQKL 578

Query: 625 QPDHDGFHVLL 635
               DG   L+
Sbjct: 579 GFAVDGITFLV 589



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 40/329 (12%)

Query: 242 GNVAEACRLFKEM-PKKDLV-SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           G  AEA  L + + P    V  W+ALI    +  + ++ L  +  M     + D      
Sbjct: 73  GASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPF 132

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL- 358
           VL AC  +  ++ G SVHA+    G+   + + N+++ MY  CG +  A ++FD      
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERK 192

Query: 359 --DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             D++SWNS+++ Y++ G    A                               L +   
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTA-------------------------------LRIAFR 221

Query: 417 MQHH---GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           M +H    +RPD  TLV+++ AC  + AL  GK +H +  +NGL  +  +G  L+ MY K
Sbjct: 222 MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 281

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
              ++ A +VF G ++K V SWNA++ G++  G  D +L +F  M++  +  + IT+  V
Sbjct: 282 CSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 341

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           +      G   E    F  M Q + LEPN
Sbjct: 342 IAGYAQKGHGFEALDVFRQM-QLYGLEPN 369



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 367 ISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +  Y++CG+  +A +L   +I     V  W+ +I    +     +TL  + +MQ  G  P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T   V+ AC  + +L  G  +HA +  NGL  N  +  +++ MY + G +D+A ++F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 485 HGTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEMKKS---GVTPNEITFVGVLGACR 538
               E+ +    SWN+++  +   G +  +L +   M       + P+ IT V +L AC 
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            +  +  G +  +     + L  +      +V +  +   + EA ++ E +    DV +W
Sbjct: 246 SVFALQHG-KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSW 303

Query: 599 GALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            A++    + G  +    + + + E  ++ D   +  +++  +A KG   + L+V   M 
Sbjct: 304 NAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAG-YAQKGHGFEALDVFRQMQ 362

Query: 657 RRGVVK--IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
             G+    +   S++     +   L G +TH  +  I N+L+
Sbjct: 363 LYGLEPNVVTLASLLSGCASVGALLYGKQTHAYV--IKNILN 402



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/471 (20%), Positives = 178/471 (37%), Gaps = 102/471 (21%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+    +  GL+ D F  + L+          +M+ + K+F  ++  +   +N M+  Y 
Sbjct: 255 QVHGFSVRNGLVDDVFVGNALVSMYAKC---SKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE------------------ 149
           Q      A+ L+K+M   ++ +D  T+  +    A +   FE                  
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 150 -----------------GKLIHDHVLKAGF-------DSDVYVNNTLINMYAVCGDLSAA 185
                            GK  H +V+K          + D+ V N LI+MYA C     A
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431

Query: 186 RKLFD--ESPVLDLVSWNSILAGYVNADNVEEAKFIY----------------------- 220
           R +FD  E    ++V+W  ++ GY       +A  ++                       
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 221 -------------------NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                              N+     +   N +I ++ + G++  A  +F  M  +++VS
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALA 320
           W++L++ Y  +   EEAL LF  M      VD +  + VL AC++  +V  G    H + 
Sbjct: 552 WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMV 611

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL----ISWNSMISGYLKCGSV 376
              GI         ++ +    G +  A +L     N+ +    + W +++S      ++
Sbjct: 612 KGFGITPGAEHYACMVDLLGRAGRLNEAMELIK---NMSMEPTAVVWVALLSASRIHANI 668

Query: 377 E----KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           E     A  L +   E D  S++ + + YA   ++ +   +   M+H GIR
Sbjct: 669 ELGEYAASKLTELGAEND-GSYTLLSNLYANARRWKDVARIRSLMKHTGIR 718


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/637 (39%), Positives = 367/637 (57%), Gaps = 42/637 (6%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-ADNVEEAKFIYNK 222
           SDV   N  I  +    DL +AR +F++  V   V+WN++L+GY   A  V+EA  +++K
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +PE + ++ N M+V + R   V  A   F +MP KD+ SW+ LIS + QN   ++A  LF
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M +                       K G S                 +A+I  Y   
Sbjct: 191 SVMPE-----------------------KNGVS----------------WSAMISGYVEH 211

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G++  AE+L+       ++   +M++GY+K G VE A  +F  M  K++V+W++MI+GY 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           ++ +  + L +F  M    +RP+  +L SV+  C++L AL  G+ +H  + K+ L  ++ 
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT 331

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
             T+LI MY K G +D+A ++F     K V SWNA+I G+A +G   K+L +F +M+   
Sbjct: 332 ACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGT 391

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P+ ITFV V+ AC H G VD G ++F SM +E  +E    HY C++DLLGRAG L EA
Sbjct: 392 MKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
             LI+ MP  P  A +G LLGAC+ H + ++ E   R L+ L P     +V L+NI+A+ 
Sbjct: 452 VSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            +WD V +VR MM    VVKIPG S IE   + HEF + DR HP++  I   L+E+  K+
Sbjct: 512 NKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKM 571

Query: 703 KLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           KL GY PD LE A  D+++E KE  L  HSEKLAIAFGL+  +P  PIR+ KNLR+C DC
Sbjct: 572 KLAGYVPD-LEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDC 630

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H A KFIS    REI+VRD  RFHHF++G CSC D+W
Sbjct: 631 HRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 79/312 (25%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  +F +F+ +   NG  ++ M+  Y++    + A  LYK     NVG+ +        
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK-----NVGMKS-------- 228

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                                     V V   ++  Y   G +  A ++F    V +LV+
Sbjct: 229 --------------------------VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE---------------------------------- 225
           WNS++AGYV     E+   ++  M E                                  
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                ++  A  S+I ++ + G++  A +LF EMP+KD++SW+A+IS Y Q+    +AL 
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALH 382

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           LF  M +  +  D +  V+V+ AC +   V  G     ++  + GIE        +I + 
Sbjct: 383 LFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLL 442

Query: 340 SSCGEITTAEKL 351
              G +  A  L
Sbjct: 443 GRAGRLDEAVSL 454



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 52/231 (22%)

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132
           T  + F ++  + +IF  +   N   +N+M+  Y++    +  + ++K M+ + V  +  
Sbjct: 237 TGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPL 296

Query: 133 TYPLL----AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +   +    +  SAL L    G+ +H  V K+    D     +LI+MY  CGDL +A KL
Sbjct: 297 SLSSVLLGCSNLSALPL----GRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKL 352

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-------------IIASN--- 232
           F E P  D++SWN++++GY       +A  +++KM  RN             I+A N   
Sbjct: 353 FLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAG 410

Query: 233 --------------------------SMIVLFGRKGNVAEACRLFKEMPKK 257
                                      +I L GR G + EA  L KEMP K
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/507 (44%), Positives = 331/507 (65%), Gaps = 32/507 (6%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           DEV +VS++ ACA L  ++ G  +H+ + ++G++  +++ NA++ MY             
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYC------------ 57

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                              KC  +E A+ +F+ + EKDV+SW++M+SG A+   F E+L+
Sbjct: 58  -------------------KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLA 98

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF +MQ H I PDE TLV V+SAC    ALDQGK+IH  I K  +  + +L T L+DMY 
Sbjct: 99  LFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYA 158

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D AL+VF     + V +WNA+I G AM+G  + ++ +F +M+   + P+++TF+ 
Sbjct: 159 KCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIA 218

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC H GLVDEG   F +M  + ++EP  +HYGC+VDLL RA  + +A   IE+MP+ 
Sbjct: 219 LLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK 278

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
            +   W  LLGAC+  G  ++ E++ R+++EL+PD  G +V+LSN++A   +WD  L++R
Sbjct: 279 ANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLR 338

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDT 711
             M  +G+ K PGCS IE NG+IH+F+AGDR+H Q  +I  M++EM +++ L+ G+ P T
Sbjct: 339 KQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGT 398

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V FDI++EEKE +LF HSEKLAIA GLI+    +PIRI+KNLR+CNDCH+  K  S+ 
Sbjct: 399 ANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKV 458

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++REIV RDR RFHHFK GSCSCMDFW
Sbjct: 459 YNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 111/191 (58%), Gaps = 2/191 (1%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           +RPDE T+VS++ AC  L  L++GK +H+Y ++ GL  N  +   ++DMY K   +++A 
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           EVF+   EK V SW +++ G A +G   +SL +F +M+   + P+EIT VGVL AC   G
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            +D+G ++ + +I +  +  +      +VD+  + G +  A ++   M +  +V TW A+
Sbjct: 127 ALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAM 184

Query: 602 LGACKKHGDHE 612
           +G    HG  E
Sbjct: 185 IGGLAMHGHGE 195



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 38/317 (11%)

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLF 251
           D V+  S++       N+E  K +++   E     N+  +N+++ ++ +  ++  A  +F
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             + +KD++SW++++S   ++  ++E+L LF  M  H++  DE+ +V VLSACA    + 
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H L  K  I C + L+ AL+ MY+ CG I  A ++F      ++ +WN+MI G  
Sbjct: 130 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGG-- 187

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                         A H    + +SLF +M+   + PD+ T ++
Sbjct: 188 -----------------------------LAMHGHGEDAISLFDQMEXDKLMPDDVTFIA 218

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEE 489
           ++ AC+H   +D+G  +   + KN  +I   +     ++D+  +   VD+AL        
Sbjct: 219 LLCACSHAGLVDEGLAMFQAM-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPI 277

Query: 490 KGVSSWNALIIGFAMNG 506
           K  S   A ++G   +G
Sbjct: 278 KANSVLWATLLGACRSG 294



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 157/345 (45%), Gaps = 50/345 (14%)

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           +N+  D  T   L  A A   ++  GKL+H +  + G D ++ VNN +++MY  C D+ +
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------------ 226
           A+++F+     D++SW S+L+G   +   +E+  ++ KM      P+             
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 227 ---------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                +++   +++ ++ + G++  A ++F+ M  +++ +W+A+
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM 184

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIG 324
           I     +   E+A+ LF  M   ++M D+V  +++L AC++  +V  G ++  A+  K  
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 244

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL----ISWNSMISGYLKCGSVEKAR 380
           IE  +     ++ +     ++  A    +   N+ +    + W +++      G  + A 
Sbjct: 245 IEPRMEHYGCVVDLLCRARKVDDALAFIE---NMPIKANSVLWATLLGACRSGGHFDLAE 301

Query: 381 ALFDAMI--EKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
            +   +I  E D      M+S  YA   Q+   L L  +M++ GI
Sbjct: 302 KIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 346



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   + +M+    +    Q+++ L++ M  + +  D  T   +  A A   
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ +GK IH  + K   + D+ +   L++MYA CG +  A ++F    V ++ +WN+++ 
Sbjct: 127 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIG 186

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
           G     + E+A  ++++M    ++  +    +++      G V E   +F+ M  K  + 
Sbjct: 187 GLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIE 246

Query: 262 -----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
                +  ++    +    ++AL    NM    +  + V+  ++L AC
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENM---PIKANSVLWATLLGAC 291


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/637 (39%), Positives = 368/637 (57%), Gaps = 42/637 (6%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-ADNVEEAKFIYNK 222
           SDV   N  I  +    DL +AR +F++  V   V+WN++L+GY   A  V+EA  +++K
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +PE + ++ N M+V + R   V  A   F +MP KD+ SW+ LIS + QN   ++A  LF
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M +                       K G S                 +A+I  Y   
Sbjct: 191 SVMPE-----------------------KNGVS----------------WSAMISGYVEH 211

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G++  AE+L+       ++   +M++GY+K G VE A  +F  M  K++V+W++MI+GY 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           ++ +  + L +F  M    +RP+  +L SV+  C++L AL  G+ +H  + K+ L  ++ 
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT 331

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
             T+LI MY K G +D+A ++F     K V +WNA+I G+A +G   K+L +F +M+   
Sbjct: 332 ACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGT 391

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P+ ITFV V+ AC H G VD G ++F SM +E  +E    HY C++DLLGRAG L EA
Sbjct: 392 MKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
             LI+ MP +P  A +G LLGAC+ H + ++ E   R L+ L P     +V L+NI+A+ 
Sbjct: 452 VSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            +WD V +VR MM    VVKIPG S IE   + HEF + DR HP++  I   L+E+  K+
Sbjct: 512 NKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKM 571

Query: 703 KLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           KL GY PD LE A  D+++E KE  L  HSEKLAIAFGL+  +P  PIR+ KNLR+C DC
Sbjct: 572 KLAGYVPD-LEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDC 630

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H A KFIS    REI+VRD  RFHHF++G CSC D+W
Sbjct: 631 HRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 79/312 (25%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  +F +F+ +   NG  ++ M+  Y++    + A  LYK     NVG+ +        
Sbjct: 182 QMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK-----NVGMKS-------- 228

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                                     V V   ++  Y   G +  A ++F    V +LV+
Sbjct: 229 --------------------------VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE---------------------------------- 225
           WNS++AGYV     E+   ++  M E                                  
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                ++  A  S+I ++ + G++  A +LF EMP+KD+++W+A+IS Y Q+    +AL 
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALH 382

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           LF  M +  +  D +  V+V+ AC +   V  G     ++  + GIE        +I + 
Sbjct: 383 LFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLL 442

Query: 340 SSCGEITTAEKL 351
              G +  A  L
Sbjct: 443 GRAGRLDEAVSL 454



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 52/229 (22%)

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132
           T  + F ++  + +IF  +   N   +N+M+  Y++    +  + ++K M+ + V  +  
Sbjct: 237 TGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPL 296

Query: 133 TYPLL----AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +   +    +  SAL L    G+ +H  V K+    D     +LI+MY  CGDL +A KL
Sbjct: 297 SLSSVLLGCSNLSALPL----GRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKL 352

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-------------IIASN--- 232
           F E P  D+++WN++++GY       +A  +++KM  RN             I+A N   
Sbjct: 353 FLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAG 410

Query: 233 --------------------------SMIVLFGRKGNVAEACRLFKEMP 255
                                      +I L GR G + EA  L KEMP
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 340/552 (61%), Gaps = 31/552 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F  +   ++ +W+ +I  Y +++    A + +  M+   V  D      +L A + 
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              V+ G ++H++ ++ G E  + +QN+L+H+Y++C                        
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC------------------------ 166

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                  G  E A  +F+ M E+D+V+W++MI+G+A + + +E L+LF EM   G+ PD 
Sbjct: 167 -------GDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDG 219

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+VS++SA   L AL+ G+ +H Y+ K GL  NS +  +L+D+Y K G +  A  VF  
Sbjct: 220 FTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSE 279

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+   SW +LI+G A+NG  +++LE+F EM+  G+ P+EITFVGVL AC H G++DEG
Sbjct: 280 MSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEG 339

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             +F  M +E  + P  +HYGCMVDLL RAG++K+A E I++MP+ P+   W  LLGAC 
Sbjct: 340 FEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACT 399

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG   +GE     L+ L+P H G +VLLSN++AS+ RW DV  +R  M++ GV K PG 
Sbjct: 400 IHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGY 459

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S++E    ++EF  GDR+HPQ  ++  +L+++ + LKLEGY P T  V  DI++EEKE  
Sbjct: 460 SLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQA 519

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEK+AIAF L+   P  PIR+MKNLR+C DCH A K I++ +DREIV+RDR RFHH
Sbjct: 520 LSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHH 579

Query: 787 FKHGSCSCMDFW 798
           F+ GSCSC D+W
Sbjct: 580 FRGGSCSCKDYW 591



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 217/463 (46%), Gaps = 59/463 (12%)

Query: 9   HLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFK-QFTQILSQMILTGLIADTFAASR 67
           H+++   S+    P+ K  I+L      LQ C S K +  QI +  I  G+  +     +
Sbjct: 3   HVTTNFVSTTPENPLTK-CISL------LQFCASSKHKLKQIHAFSIRHGVSLNNPDMGK 55

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
            + F+   L    MSY++ +F  + +PN F +NT++R Y + + P  A   Y+ M+ + V
Sbjct: 56  HLIFTIVSLS-APMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCV 114

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
             D +TYP L +A +  L+V EG+ IH   ++ GF+S V+V N+L+++YA CGD  +A K
Sbjct: 115 EPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYK 174

Query: 188 LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE---------------- 225
           +F+     DLV+WNS++ G+       EA  ++ +M      P+                
Sbjct: 175 VFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGA 234

Query: 226 -----------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                            +N   +NS++ L+ + G + EA R+F EM +++ VSW++LI  
Sbjct: 235 LELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG 294

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIEC 327
              N   EEAL LF  M    ++  E+  V VL AC++  ++  G      +  + GI  
Sbjct: 295 LAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIP 354

Query: 328 YINLQNALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSM-----ISGYLKCGSVEKARA 381
            I     ++ + S  G +  A E + +     + + W ++     I G+L  G + ++  
Sbjct: 355 RIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHL 414

Query: 382 L-FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           L  +     D V  S +   YA   ++S+   +   M   G++
Sbjct: 415 LNLEPKHSGDYVLLSNL---YASERRWSDVQVIRRSMLKDGVK 454



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 176/435 (40%), Gaps = 108/435 (24%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE 225
           +  + ++   +S A  +F      ++ +WN+I+ GY  +DN   A   Y +M      P+
Sbjct: 58  IFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 226 ----------------------------RN-----IIASNSMIVLFGRKGNVAEACRLFK 252
                                       RN     +   NS++ ++   G+   A ++F+
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            M ++DLV+W+++I+ +  N    EAL LF  M    V  D   VVS+LSA A L  ++ 
Sbjct: 178 LMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALEL 237

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VH   +K+G+    ++ N+L+ +Y+ CG I  A+++F      + +SW S+I G   
Sbjct: 238 GRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG--- 294

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
                                    ++G+ +     E L LF EM+  G+ P E T V V
Sbjct: 295 -----------------------LAVNGFGE-----EALELFKEMEGQGLVPSEITFVGV 326

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + AC+H   LD+G     Y R+               M  + G +              +
Sbjct: 327 LYACSHCGMLDEG---FEYFRR---------------MKEECGIIPR------------I 356

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
             +  ++   +  GL  ++ E    M    V PN + +  +LGAC        GH     
Sbjct: 357 EHYGCMVDLLSRAGLVKQAYEYIQNMP---VQPNAVIWRTLLGAC-----TIHGHLGLGE 408

Query: 553 MIQEHRLEPNSKHYG 567
           + + H L    KH G
Sbjct: 409 IARSHLLNLEPKHSG 423


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/555 (42%), Positives = 346/555 (62%), Gaps = 8/555 (1%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF ++   +  +W+ALI  Y       +AL  + +M   RV        ++ SACA +  
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 310 VKAGTSVHALAVKIG---IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              G  +HA  + +G    + Y+N  NA+I MY  CG +  A  +FD     D+ISW  +
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVN--NAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I  Y + G +  AR LFD +  KD+V+W+ M++GYAQ+    + L +F  ++  G+  DE
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVF 484
            TLV VISAC  L A     WI      +G  +  N ++G+ LIDMY K G V+ A +VF
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            G  E+ V S++++I+GFA++G A  ++++F +M ++GV PN +TFVGVL AC H GLVD
Sbjct: 303 KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVD 362

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           +G + F SM + + + P ++ Y CM DLL RAG L++A +L+E+MPM  D A WGALLGA
Sbjct: 363 QGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
              HG+ ++ E   ++L EL+PD+ G ++LLSN +AS GRWDDV +VR ++  + + K P
Sbjct: 423 SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNP 482

Query: 665 GCSMIEA-NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           G S +EA NG+IH+F+AGD +HP+INEI   L+++ ++LK  GY P+   + + I+  EK
Sbjct: 483 GWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREK 542

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
              L  HSEKLA+AFGL++    + I+IMKNLRIC DCH      S+   R+IVVRD  R
Sbjct: 543 RLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTR 602

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF +G+CSC +FW
Sbjct: 603 FHHFLNGACSCSNFW 617



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 69/479 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM-SYSFKIFAFLESPN 95
           L++C S  Q  ++ +Q+ +  L   ++  ++L++  T  LP + + SY   +F+ L +PN
Sbjct: 15  LERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVT-ALPHVPLHSYPRLLFSQLHTPN 73

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSVFEGKLIH 154
            F +  ++RAY  R    QA+  Y  M    V   ++T+  L +  +A+R S    +L  
Sbjct: 74  PFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHA 133

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             +L  GF SD+YVNN +I+MY  CG L  A                             
Sbjct: 134 QTLLLGGFSSDLYVNNAVIDMYVKCGSLRCA----------------------------- 164

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
             + ++++MPER++I+   +IV + R G++  A  LF  +P KD+V+W+A+++ Y QN M
Sbjct: 165 --RMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAM 222

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQ 332
             +AL +F  + D  V +DEV +V V+SACA L   K    +  +A   G     N  + 
Sbjct: 223 PMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVG 282

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           +ALI MYS CG +  A  +F      ++ S++SMI G                       
Sbjct: 283 SALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVG----------------------- 319

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                   +A H +    + LF +M   G++P+  T V V++AC+H   +DQG+ + A +
Sbjct: 320 --------FAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASM 371

Query: 453 RK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLAD 509
            K  G+   + L   + D+  + G ++ AL++      E   + W AL+    ++G  D
Sbjct: 372 EKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPD 430



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 53/305 (17%)

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R LF  +   +  +W+ +I  YA     S+ LS +  M+   + P   T  ++ SAC  +
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 440 VALDQGKWIHAY-IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
                G  +HA  +   G   +  +   +IDMY+K G +  A  VF    E+ V SW  L
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 499 II-------------------------------GFAMNGLADKSLEMFSEMKKSGVTPNE 527
           I+                               G+A N +   +LE+F  ++  GV  +E
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG---------CMVDLLGRAGM 578
           +T VGV+ AC  +G      ++ N +    R    S  +G          ++D+  + G 
Sbjct: 243 VTLVGVISACAQLG----ASKYANWI----RDIAESSGFGVGDNVLVGSALIDMYSKCGN 294

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGF-HVLL 635
           ++EA ++ + M    +V ++ +++     HG      ++   ++E  ++P+H  F  VL 
Sbjct: 295 VEEAYDVFKGM-RERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLT 353

Query: 636 SNIHA 640
           +  HA
Sbjct: 354 ACSHA 358


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/845 (33%), Positives = 435/845 (51%), Gaps = 102/845 (12%)

Query: 20  AKPIFKPTINLSIL-----ETHLQKCQSF---KQFTQILSQMILTGLIADTFAASRL--- 68
           ++ I + +  LS L       H Q+C S      +  +L Q+I  G  AD  A   L   
Sbjct: 3   SRTIVRDSTKLSQLLHQCRNIHHQQCLSALDSHSYAHMLQQIIRNG--ADPIAGKHLHCH 60

Query: 69  -IKFSTDL--------LPFIEMSYSF----KIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
            +K  T L        L F   S S     K+F  +   N   F T+ + Y + +   QA
Sbjct: 61  ILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQA 120

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL---IHDHVLKAGFDSDVYVNNTL 172
           +     +      V+ + +  L +   L +S+    L   +H  V K G  +D +V   L
Sbjct: 121 LHFILRIFKEGHEVNPFVFTTLLK---LLVSMDLAHLCWTLHACVYKLGHHADAFVGTAL 177

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-------- 224
           I+ Y+V G++  AR +FD+    D+VSW  ++A Y      EE+  ++N+M         
Sbjct: 178 IDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNN 237

Query: 225 -------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKE 253
                                          + ++    +++ L+ + G + +A RLF+E
Sbjct: 238 FTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEE 297

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MPK DL+ WS +I+ Y Q++  +EAL LF+ M    V+ +     SVL ACA+   +  G
Sbjct: 298 MPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLG 357

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H+  +K G+   + + NA++ +Y+                               KC
Sbjct: 358 KQIHSCVLKFGLNSNVFVSNAIMDVYA-------------------------------KC 386

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +E +  LF+ + +++ V+W+T+I GY Q       ++LF  M  H ++P E T  SV+
Sbjct: 387 GEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVL 446

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            A   L AL+ G  IH+   K     ++++  +LIDMY K G +++A   F    ++   
Sbjct: 447 RASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEV 506

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWNA+I G++M+G++ ++L +F  M+ +   PN++TFVGVL AC + GL+ +G  HF SM
Sbjct: 507 SWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESM 566

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            +++ ++P  +HY CMV LLGR G   EA +LI  +   P V  W ALLGAC  H   ++
Sbjct: 567 SKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDL 626

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G    + ++E++P  D  HVLLSN++A+ GRWD+V  VR  M ++ V K PG S +E  G
Sbjct: 627 GRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQG 686

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
           ++H F  GD +HP I  I  ML+ + KK +  GY PD   V  D+  +EKE  L+ HSE+
Sbjct: 687 VVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSER 746

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+A+GLI       IRI+KNLRIC DCHT  K IS+   REIV+RD +RFHHF+HG CS
Sbjct: 747 LALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCS 806

Query: 794 CMDFW 798
           C D+W
Sbjct: 807 CGDYW 811


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/721 (35%), Positives = 390/721 (54%), Gaps = 45/721 (6%)

Query: 90  FLESP----NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           F E+P    +  ++N M+  +   N    AI L+  M +     D++TY   +  + L L
Sbjct: 103 FEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYA--SVLAGLAL 160

Query: 146 SVFEGKL---IHDHVLKAGFDSDVYVNNTLINMYAVCGD----LSAARKLFDESPVLDLV 198
            V + K     H   LK+G      V+N L+++Y+ C      L +ARK+FD+ P  D  
Sbjct: 161 VVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDER 220

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           SW +++ GYV     +  K +   M E                                 
Sbjct: 221 SWTTMMTGYVKNGCFDLGKELLKGMDE------------------------------NMK 250

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           LV+++A+IS Y    +Y+EAL +   M+   + +DE    SV+ ACAN  +++ G  VHA
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHA 310

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             ++   +   +  N+L+ +Y  CG+   A  +F+     DL+SWN+++SGY+  G + +
Sbjct: 311 YVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A+ +F  M EK+++SW  MISG A++    E L LF  M+  G  P +      I +C  
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L A   G+  HA + K G   +   G  LI MY K G V+ A +VF         SWNAL
Sbjct: 430 LGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNAL 489

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I     +G   ++++++ EM K G+ P+ ITF+ VL AC H GLVD+G ++FNSM   +R
Sbjct: 490 IAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYR 549

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + P + HY  ++DLL R+G   EAE +IES+P  P    W ALL  C+ HG+ E+G    
Sbjct: 550 IPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAA 609

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            KL  L P+HDG ++LLSN++A+ G+W++V  VR +M  RGV K   CS IE    +H F
Sbjct: 610 DKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTF 669

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE-EKETTLFRHSEKLAIA 737
           L  D +HP+   +   L ++ K+++  GY PDT  V  D++ +  KE  L  HSEK+A+A
Sbjct: 670 LVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVA 729

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+ + P   IRI KNLR C DCH   +F+S+   R+I++RDR RFHHF++G CSC +F
Sbjct: 730 FGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNF 789

Query: 798 W 798
           W
Sbjct: 790 W 790



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 242/534 (45%), Gaps = 75/534 (14%)

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           R S+   + +H +++  GF    ++ N LI++Y    +L  AR+LFDE    D ++  ++
Sbjct: 27  RTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTM 86

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           ++GY  + ++  A+ ++ + P                             +  +D V ++
Sbjct: 87  VSGYCASGDIALARSVFEETP-----------------------------VSMRDTVMYN 117

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV--VKAGTSVHALAV 321
           A+I+ +  N     A+ LF  M       D+    SVL+  A L V   K     HA A+
Sbjct: 118 AMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLA-LVVDDEKQCVQFHAAAL 176

Query: 322 KIGIECYINLQNALIHMYSSCGE----ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           K G     ++ NAL+ +YS C      + +A K+FD     D  SW +M++GY+K G  +
Sbjct: 177 KSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFD 236

Query: 378 KARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
             + L   M E   +V+++ MISGY     + E L +   M   GI  DE T  SVI AC
Sbjct: 237 LGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRAC 296

Query: 437 THLVALDQGKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
            +   L  GK +HAY+ R+     +     +L+ +Y K G  + A  +F     K + SW
Sbjct: 297 ANARLLQLGKQVHAYVLRREDFSFH--FDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSW 354

Query: 496 NALIIGF-------------------------------AMNGLADKSLEMFSEMKKSGVT 524
           NAL+ G+                               A NG  ++ L++FS MK+ G  
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P +  F G + +C  +G    G + F++ + +   + +      ++ +  + G+++EA++
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQ 473

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           +  +MP   D  +W AL+ A  +HG       V  ++++  ++PD   F  +L+
Sbjct: 474 VFRTMP-CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/416 (19%), Positives = 159/416 (38%), Gaps = 86/416 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  ++  N   +  M+    +    ++ + L+  M        +Y +    ++ A+  +
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+  H  ++K GFDS +   N LI MYA CG +  A+++F   P LD VSWN+++A 
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                           G+ G+  EA  +++EM KK         
Sbjct: 493 -------------------------------LGQHGHGVEAVDVYEEMLKKG-------- 513

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGI 325
                                  +  D +  ++VL+AC++  +V  G    +++     I
Sbjct: 514 -----------------------IRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRI 550

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVE----KAR 380
               +    LI +    G+ + AE + ++         W +++SG    G++E     A 
Sbjct: 551 PPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAAD 610

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            LF  + E D  ++  + + YA   Q+ E   +   M+  G++ + A     +    H  
Sbjct: 611 KLFGLIPEHD-GTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTF 669

Query: 441 ALD-----QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            +D     + + ++ Y++  G ++             +LG V +   V H  E  G
Sbjct: 670 LVDDTSHPEAEAVYKYLQDLGKEMR------------RLGYVPDTSFVLHDVESDG 713


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/812 (32%), Positives = 427/812 (52%), Gaps = 74/812 (9%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           P +  SIL     K + F+    I  Q+   G  ++TF  + LI        F     + 
Sbjct: 143 PYVLSSILSA-CTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSF---RLAD 198

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   FNT++  + Q     +A+ ++  M  + +  D+ T   L  A +   
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + +GK +H ++LKAG   D  +  +L+++Y   GD+  A ++FD     ++V WN +L 
Sbjct: 259 DLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLV 318

Query: 206 GYVNADNVEEA---------------KFIYNKMP------------------------ER 226
            Y   D++ ++               KF Y  M                         + 
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQS 378

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  S  +I ++ + G + +A R+   + +KD+VSW+++I+ Y Q+E  +EAL  F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQ 438

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D + + S +SACA +  V  G+ +HA                            
Sbjct: 439 ACGIWPDNIGLASAISACAGIKAVHQGSQIHA---------------------------- 470

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
              +++ +G++ D+  WN ++  Y +CG  ++A + F+A+  K+ ++W+ +ISG+AQ   
Sbjct: 471 ---RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGL 527

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + E L +FM+M   G + +  T VS ISA  +L  + QGK IHA + K G    + +   
Sbjct: 528 YEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNA 587

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI +Y K G +++A   F    ++   SWN +I   + +G   ++L++F +MK+ G+ P+
Sbjct: 588 LISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPS 647

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           ++TFVGVL AC H+GLV+EG  +F SM  EH + P   HY C+VD+LGRAG L  A+  +
Sbjct: 648 DVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFV 707

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E MP+  D   W  LL ACK H + E+GE   + L+EL+P     +VLLSN +A  G+W 
Sbjct: 708 EEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWA 767

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
              ++R +M  RGV K PG S IE   ++H F  GDR HP  ++I N L  +  +L   G
Sbjct: 768 SRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIG 827

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  +   +  + ++E K+ T F HSEKLA+AFGL+++    P+R++KNLR+CNDCHT  K
Sbjct: 828 YKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMK 887

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F S    REIV+RD +RFHHF +GSCSC D+W
Sbjct: 888 FTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/564 (25%), Positives = 261/564 (46%), Gaps = 74/564 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  L   +   +  ++  Y Q  + ++A+ LY+ M  + V    Y    +  A   + 
Sbjct: 98  RVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACT-KT 156

Query: 146 SVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +F+ G+LIH  V K GF S+ +V N LI++Y  C     A ++F +    D V++N+++
Sbjct: 157 ELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLI 216

Query: 205 AGYVNADNVEEAKFIYNKM------PERNIIAS--------------------------- 231
           +G+    + + A  I+++M      P+   IAS                           
Sbjct: 217 SGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMS 276

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                  S++ L+ + G++ EA ++F    + ++V W+ ++  Y Q +   ++  +F  M
Sbjct: 277 LDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRM 336

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +   V  ++     +L  C +   +  G  +H+L +K G +  + +   LI MYS     
Sbjct: 337 LAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYS----- 391

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     K G ++KA+ + D + EKDVVSW++MI+GY QH+
Sbjct: 392 --------------------------KYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHE 425

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E L  F EMQ  GI PD   L S ISAC  + A+ QG  IHA +  +G   +  +  
Sbjct: 426 FCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWN 485

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+ +Y + G    A   F   E K   +WN LI GFA +GL +++L++F +M ++G   
Sbjct: 486 GLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKY 545

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N  TFV  + A  ++  + +G +  ++ + +      ++    ++ L G+ G +++A+  
Sbjct: 546 NVFTFVSSISASANLADIKQG-KQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMD 604

Query: 586 IESMPMSPDVATWGALLGACKKHG 609
              M    +V +W  ++  C +HG
Sbjct: 605 FFEMTKRNEV-SWNTIITCCSQHG 627



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 259/595 (43%), Gaps = 85/595 (14%)

Query: 93  SPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           +P G   FN  +  ++  + P++ + L+       + +    +     A ALR     G+
Sbjct: 2   TPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDF-----ACALRACRGSGR 56

Query: 152 L------IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
                  IH   +  G      + N LI++YA  G +  AR++F+E  V D VSW ++L+
Sbjct: 57  RWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLS 116

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
           GY      EEA  +Y +M    ++ +                                  
Sbjct: 117 GYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFS 176

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N++I L+ R  +   A R+F +M   D V+++ LIS + Q    + AL +F  M 
Sbjct: 177 ETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQ 236

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D V + S+L+AC+ +  ++ G  +H+  +K G+     ++ +L+ +Y   G+I 
Sbjct: 237 LSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A ++FD+G   +++ WN                                M+  Y Q D 
Sbjct: 297 EALQIFDSGDRTNVVLWN-------------------------------LMLVAYGQIDD 325

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +++  +F  M   G+RP++ T   ++  CTH   +  G+ IH+   KNG + +  +   
Sbjct: 326 LAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGV 385

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G +D A  +    EEK V SW ++I G+  +    ++LE F EM+  G+ P+
Sbjct: 386 LIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPD 445

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            I     + AC  +  V +G +  ++ +       +   +  +V L  R G+ KEA    
Sbjct: 446 NIGLASAISACAGIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF 504

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           E++     + TW  L+    + G +E   +V  K+ +    ++ F   +S+I AS
Sbjct: 505 EAIEHKEGI-TWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVF-TFVSSISAS 557



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 15/250 (6%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  +   S++  ++G+   D   + L LF       +      L +V  AC        G
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYM-----VLGAVDFACALRACRGSG 55

Query: 446 K-W-----IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
           + W     IHA     GL    I+G  LID+Y K G V  A  VF     +   SW A++
Sbjct: 56  RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            G+A NGL ++++ ++ EM +SGV P       +L AC    L   G R  +  + +   
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLG-RLIHVQVYKQGF 174

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK--HGDHEMGERV 617
              +     ++ L  R    + A+ +   M +  D  T+  L+    +  HGD  +G   
Sbjct: 175 FSETFVGNALISLYLRCRSFRLADRVFCDM-LYCDSVTFNTLISGHAQCGHGDRALGIFD 233

Query: 618 GRKLVELQPD 627
             +L  L PD
Sbjct: 234 EMQLSGLSPD 243


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/689 (34%), Positives = 381/689 (55%), Gaps = 68/689 (9%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +GK IH  V ++    DV+VN  L+N Y  CG L+ ARK+FD  P   + +WNS+++ Y 
Sbjct: 28  KGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYS 87

Query: 209 NADNVEEAKFIYNKM---------------------PER------------------NII 229
            ++   EA FI+ +M                     PE                   ++ 
Sbjct: 88  ISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLF 147

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              ++I ++ R  +   A ++F  M +K+L++WSA+I+ +  +    EAL  F  M    
Sbjct: 148 VGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEG 207

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           ++ + V  +S+L+     + ++  + +H L  + G++    + NAL+++Y  C       
Sbjct: 208 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRC------- 260

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                                 + G ++ A  +   M E+ + +W+ +I+GY  H +  E
Sbjct: 261 ----------------------ETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSRE 298

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L  +  +Q   I  D+ T +SV++ACT   +L +GK IH+   + GL  + I+   L +
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTN 358

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G ++NA  +F     +   SWN ++  +A +G +++ L++  +M++ GV  N IT
Sbjct: 359 MYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGIT 418

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           FV VL +C H GL+ EG ++F+S+  +  +E  ++HYGC+VDLLGRAG L+EAE+ I  M
Sbjct: 419 FVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKM 478

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P  P++ TW +LLGAC+ H D + G+   RKL+EL P +    V+LSNI++ +G W +  
Sbjct: 479 PSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAA 538

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           ++R  M  R V K+PG S I+    +HEF   D +HP+  EI + ++E+   ++  GY P
Sbjct: 539 KLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVP 598

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           DT  V  D+D+E+KE+ L  HSEKLAIAFGLI+    + + I KNLR+C DCHTA KFIS
Sbjct: 599 DTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFIS 658

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   REIVVRD HRFHHF+ GSCSC D+W
Sbjct: 659 KITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 209/432 (48%), Gaps = 39/432 (9%)

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLF 251
           +++++ ++L   V+ D + + KFI++ + E     ++  + +++  + + G++ +A ++F
Sbjct: 9   NVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVF 68

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             MP + + +W+++IS Y  +E   EA  +F  M       D V  +S+L AC N   ++
Sbjct: 69  DGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQ 128

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  V     +   E  + +  ALI MY+ C     A ++F      +LI+W++      
Sbjct: 129 HGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA------ 182

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                    +I+ +A H    E L  F  MQ  GI P+  T +S
Sbjct: 183 -------------------------IITAFADHGHCGEALRYFRMMQQEGILPNRVTFIS 217

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK--LGCVDNALEVFHGTEE 489
           +++  T    L++   IH  I ++GL   + +   L+++Y +   G +D A  +    +E
Sbjct: 218 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDE 277

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + +++WN LI G+ ++G + ++LE +  ++   +  +++TF+ VL AC     + EG + 
Sbjct: 278 QQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KM 336

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +S   E  L+ +      + ++  + G ++ A  + +SMP+   V +W  +L A  +HG
Sbjct: 337 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAV-SWNGMLQAYAQHG 395

Query: 610 DHEMGERVGRKL 621
           + E   ++ RK+
Sbjct: 396 ESEEVLKLIRKM 407



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y      ++A+  Y+ +    + VD  T+  +  A     S+ EGK+IH + +
Sbjct: 283 WNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 342

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G DSDV V N L NMY+ CG +  AR++FD  P+   VSWN +L  Y      EE   
Sbjct: 343 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 402

Query: 219 IYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEM 254
           +  KM +  +    I   S++      G +AE C+ F  +
Sbjct: 403 LIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSL 442



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 98/189 (51%), Gaps = 2/189 (1%)

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G++ +  T ++V+++     AL +GK+IH+ +R++   ++  + T L++ Y K G + +A
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            +VF G   + V +WN++I  ++++  + ++  +F  M+  G   + +TF+ +L AC + 
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
             +  G +H    I E   E +      ++ +  R    + A ++   M    ++ TW A
Sbjct: 125 ENLQHG-KHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLITWSA 182

Query: 601 LLGACKKHG 609
           ++ A   HG
Sbjct: 183 IITAFADHG 191



 Score = 43.1 bits (100), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 108/264 (40%), Gaps = 10/264 (3%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
           + A P+ K T  +S+L        S  +   I S  +  GL +D    + L    +    
Sbjct: 308 LEAIPVDKVTF-ISVLNA-CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGS 365

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PL 136
              M  + +IF  +   +   +N M++AY Q    ++ + L + M    V ++  T+  +
Sbjct: 366 ---MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSV 422

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-L 195
           L+  S   L     +  H      G +        L+++    G L  A K   + P   
Sbjct: 423 LSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEP 482

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL---FGRKGNVAEACRLFK 252
           ++V+W S+L       +++  K    K+ E +   S++ +VL   +  +G+   A +L +
Sbjct: 483 EIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRR 542

Query: 253 EMPKKDLVSWSALISCYEQNEMYE 276
            M  + +     + S   +N+++E
Sbjct: 543 AMASRRVKKVPGISSIQVKNKVHE 566


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/742 (33%), Positives = 412/742 (55%), Gaps = 71/742 (9%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N +M    +      +I L+K M+++ V +D+YT+  ++++ +   SV  G+ +H  
Sbjct: 10  LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 69

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           +LK+GF     V N+L+  Y     + +ARK+FDE    D++SWNSI+ GYV+    E+ 
Sbjct: 70  ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 129

Query: 217 KFIYNKM-------------------PERNIIA--------------------SNSMIVL 237
             ++ +M                    +  +I+                     N+++ +
Sbjct: 130 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 189

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++  A  +F+EM  + +VS++++I+ Y +  +  EA+ LF  M +  +  D   V
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            +VL+ CA   ++  G  VH    +  +   I + NAL+ MY+                 
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA----------------- 292

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF-ME 416
                         KCGS+++A  +F  M  KD++SW+T+I GY+++   +E LSLF + 
Sbjct: 293 --------------KCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 338

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           ++     PDE T+  V+ AC  L A D+G+ IH YI +NG   +  +  +L+DMY K G 
Sbjct: 339 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 398

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A  +F     K + SW  +I G+ M+G   +++ +F++M+++G+  +EI+FV +L A
Sbjct: 399 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 458

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLVDEG R FN M  E ++EP  +HY C+VD+L R G L +A   IE+MP+ PD  
Sbjct: 459 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 518

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WGALL  C+ H D ++ E+V  K+ EL+P++ G++VL++NI+A   +W+ V  +R  + 
Sbjct: 519 IWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIG 578

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
           +RG+ K PGCS IE  G ++ F+AGD ++P+   I+  L ++  ++  EGY+P T     
Sbjct: 579 QRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALI 638

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D ++ EKE  L  HSEKLA+A G+I+      IR+ KNLR+C DCH  AKF+S+   REI
Sbjct: 639 DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREI 698

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           V+RD +RFH FK G CSC  FW
Sbjct: 699 VLRDSNRFHQFKDGHCSCRGFW 720



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 213/480 (44%), Gaps = 78/480 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   +   +N+++  Y+   + ++ + ++  ML + + +D  T   +    A   
Sbjct: 100 KVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSR 159

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +H   +KA F  +    NTL++MY+ CGDL +A+ +F E     +VS+ S++A
Sbjct: 160 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 219

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY       EA  ++ +M E                                        
Sbjct: 220 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 279

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I  SN+++ ++ + G++ EA  +F EM  KD++SW+ +I  Y +N    EAL LF  ++
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 339

Query: 287 DH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +  R   DE  V  VL ACA+L+    G  +H   ++ G     ++ N+L+ MY+ CG +
Sbjct: 340 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  LFD   + DL+SW  MI+GY                                 H 
Sbjct: 400 LLAHMLFDDIASKDLVSWTVMIAGY-------------------------------GMHG 428

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG- 464
              E ++LF +M+  GI  DE + VS++ AC+H   +D+G W    I ++  KI   +  
Sbjct: 429 FGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEH 487

Query: 465 -TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMN---GLADKSLEMFSEMK 519
              ++DM  + G +  A             + W AL+ G  ++    LA+K  E   E++
Sbjct: 488 YACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE 547



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 191/412 (46%), Gaps = 37/412 (8%)

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F E+  +  + W+ L++   ++  +  ++ LF  M+   V +D      V  + ++L  V
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
             G  +H   +K G     ++ N+L+  Y     + +A K+FD     D+ISWNS+I+GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           +  G  EK                                LS+F++M   GI  D AT+V
Sbjct: 121 VSNGLAEKG-------------------------------LSVFVQMLVSGIEIDLATIV 149

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           SV + C     +  G+ +H+   K           TL+DMY K G +D+A  VF    ++
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V S+ ++I G+A  GLA +++++F EM++ G++P+  T   VL  C    L+DEG R  
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR-V 268

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +  I+E+ L  +      ++D+  + G ++EAE +   M +  D+ +W  ++G   K+  
Sbjct: 269 HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV-KDIISWNTIIGGYSKNCY 327

Query: 611 HEMGERVGRKLVE---LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
                 +   L+E     PD      +L    AS   +D   E+ G ++R G
Sbjct: 328 ANEALSLFNLLLEEKRFSPDERTVACVLPAC-ASLSAFDKGREIHGYIMRNG 378


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/551 (41%), Positives = 341/551 (61%), Gaps = 29/551 (5%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +P+++L S++ L++    +          ++  DHR             A + L 
Sbjct: 113 RLFPNLPRRNLHSFTFLLASISNH----------LDATDHR-------------ASSFL- 148

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSMI 367
               G+ VHALAVK G    + ++NAL H Y  CG++     +FD    + D+++WN+++
Sbjct: 149 ----GSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVL 204

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GY++ G V  AR +F+ M  +D VSWST++ GY +  +    L +F +M   G+R +EA
Sbjct: 205 AGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEA 264

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +V+ +SA   +  L+ G+++H  +++ G+ ++  +G  L+DM+ K GCV  A EVF G 
Sbjct: 265 AVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGM 324

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +WNA+I G A +GL   ++E+F      G+ P +ITFVGVL AC   GLV EG 
Sbjct: 325 PRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGR 384

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R+F  M+ ++R+EP  +HYGCMVDLLGRAG++ EA ELIE M ++PD   WG +L ACK 
Sbjct: 385 RYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKT 444

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           H   ++G  VG KL+EL+P HDG +VLL++I+A   +WD+V EVR +M  RG  K  G S
Sbjct: 445 HNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWS 504

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
           ++EA G +H+FL GD  H    +I NMLD + ++L   GY PD   V  DI  EEK   +
Sbjct: 505 LMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAI 564

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSE+LAIA+G I     +PIRI+KNL++C DCH  +K +++ F+REI+VRD  RFHH 
Sbjct: 565 KVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHM 624

Query: 788 KHGSCSCMDFW 798
           K G CSC+D+W
Sbjct: 625 KEGKCSCLDYW 635



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 197/453 (43%), Gaps = 102/453 (22%)

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-VLDLV 198
           A+  R S F G  +H   +KAG   D+YV N L + Y VCGD+ A R +FDE P V D+V
Sbjct: 139 ATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVV 198

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           +WN++LAGYV A  V  A+ ++ +MP R+ ++ ++++  + ++G +              
Sbjct: 199 TWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGEL-------------- 244

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
                            + AL +F +M++  V V+E  VV+ LSA A + +++ G  VH 
Sbjct: 245 -----------------DVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHE 287

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           +  + G+   +N+  AL+ M+S CG +  A ++FD     D+ +WN+             
Sbjct: 288 VVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNA------------- 334

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                             MI G A H    + + LF      G+ P + T V V++AC+ 
Sbjct: 335 ------------------MICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSR 376

Query: 439 LVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
              + +G ++    + K  ++        ++D+  + G V  A+E+  G           
Sbjct: 377 CGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMH--------- 427

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
                                    + P+ + +  VL AC+   LVD G    N +I+  
Sbjct: 428 -------------------------IAPDPVLWGTVLSACKTHNLVDLGITVGNKLIE-- 460

Query: 558 RLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
            LEP +  HY  +  +  +A    E  E+ + M
Sbjct: 461 -LEPAHDGHYVLLASIYAKAKKWDEVREVRKLM 492



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHV 157
           ++T++  Y++      A+ +++ M+   V V N    + A ++A ++ + E G+ +H+ V
Sbjct: 231 WSTLVGGYVKEGELDVALGVFRDMVEKGVRV-NEAAVVTALSAAAQMGLLEHGRFVHEVV 289

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
            + G    V V   L++M++ CG ++ AR++FD  P  D+ +WN+++ G  +    ++A 
Sbjct: 290 QRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAV 349

Query: 218 FIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMPKK-----DLVSWSALISC 268
            ++ +  +  +  ++   V       R G VAE  R FK M  K     ++  +  ++  
Sbjct: 350 ELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDL 409

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
             +  +  EA+ L   M    +  D V+  +VLSAC    +V  G +V
Sbjct: 410 LGRAGLVSEAIELIEGM---HIAPDPVLWGTVLSACKTHNLVDLGITV 454


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/827 (34%), Positives = 439/827 (53%), Gaps = 65/827 (7%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIAD-TFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           +  T   +C+S      I  Q+++ GL  D T   S  + F++   P   +S   ++   
Sbjct: 31  LTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNS---PAKALSVLRRLHP- 86

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
             S   F +N ++R  +     +  + LY+ M       D+YT+P + +A     S   G
Sbjct: 87  -SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 145

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE---SPVLDLVSWNSILAGY 207
             +H  V  +GF+ +V+V N L++MY  CG    AR++FDE     V DLVSWNSI+A Y
Sbjct: 146 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205

Query: 208 VNADNVEEAKFIYNKMPE----------------------------------------RN 227
           +   +   A  ++ +M E                                         +
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 265

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N+++ ++ + G + EA ++F+ M  KD+VSW+A+++ Y Q   +++AL LF  + +
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 325

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI----------NLQNALIH 337
            ++ ++ V   +V++  A   +      V       G E  +           L   L+H
Sbjct: 326 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLH 385

Query: 338 MYSS-CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD--VVSW 394
              + C  I     L +     DL+  N++I  Y KC S + ARA+FD +  KD  VV+W
Sbjct: 386 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 445

Query: 395 STMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           + +I G AQH + +E L LF +M    + + P+  T+   + AC  L AL  G+ IHAY+
Sbjct: 446 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 505

Query: 453 RKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
            +N  +   + +   LIDMY K G VD A  VF    ++   SW +L+ G+ M+G  +++
Sbjct: 506 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 565

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L++F EM+K G+ P+ +TFV VL AC H G+VD+G  +FN M ++  + P ++HY CMVD
Sbjct: 566 LQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 625

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LL RAG L EA ELI  MPM P  A W ALL AC+ + + E+GE    +L+EL+  +DG 
Sbjct: 626 LLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGS 685

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           + LLSNI+A+   W DV  +R +M   G+ K PGCS ++       F AGD +HP   +I
Sbjct: 686 YTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQI 745

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
            ++L ++ +++K  GY PD      D+D EEK   L  HSEKLA+A+G++T +P  PIRI
Sbjct: 746 YDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRI 805

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR C DCH+A  +IS   + EI+VRD  RFHHFK+GSCSC  +W
Sbjct: 806 TKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/587 (40%), Positives = 355/587 (60%), Gaps = 35/587 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F+     +L  ++ALI    +N  +E ++  F+ M+   +  D + +  VL + A 
Sbjct: 91  ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI--------------------- 345
           L  V  G  +H   +K+G+E    ++ +L+ MY   GE+                     
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210

Query: 346 --------------TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
                         + A  LF+A    +  SWNS+I+G+++ G +++AR LF  M EK+V
Sbjct: 211 WNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           VSW+TMI+G++Q+    + LS+F  M   G+RP++ T+VS + ACT + AL  G+ IH Y
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           +  NG ++N  +GT L+DMY K G + +A  VF  T+ K + +W+ +I G+A++G  D++
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L+ F +MK +G+ P+E+ F+ +L AC H G VD+G   F SM  ++ +EP  KHY  +VD
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LLGRAG L EA   I+SMP++PD   WGAL  AC+ H + EM E    KL++L+P H G 
Sbjct: 451 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 510

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +V LSN++A+ GRW+DV  VR +M  RGV K PG S IE  G +H F+AGD  H +  EI
Sbjct: 511 YVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 570

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
              L+E+    K EGY P+T  V  +I++EEKE  L  HSEKLA+AFGLI+ +P + IRI
Sbjct: 571 SLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRI 630

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +KNLR+C DCH+  K+ S+   REI++RD  RFHHFK G+CSC D+W
Sbjct: 631 VKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 231/458 (50%), Gaps = 45/458 (9%)

Query: 34  ETH----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           ETH    +    +  Q  QI +Q+ L  L +++   ++LI  S  L     + Y+  IF 
Sbjct: 40  ETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLK---SLDYALSIFR 96

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
             + PN F+FN ++R   + +  + ++  + LML  ++  D  T P + ++ A  + V  
Sbjct: 97  CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL 156

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD----LVSWNSILA 205
           G+ +H  V+K G + D +V  +L++MY   G+L    +LFDESP  +    ++ WN ++ 
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLIN 216

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           G     ++ +A  ++  MPERN  + NS+I  F R G++  A  LF +MP+K++VSW+ +
Sbjct: 217 GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTM 276

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+ + QN  +E+AL +F  M++  V  +++ VVS L AC  +  ++ G  +H      G 
Sbjct: 277 INGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGF 336

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +    +  AL+ MY+ CG I +A ++F      DL++W                      
Sbjct: 337 QLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTW---------------------- 374

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                    S MI G+A H  F + L  F++M+  GI PDE   +++++AC+H   +DQG
Sbjct: 375 ---------SVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQG 425

Query: 446 KWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNAL 481
                 +R +   I   +   T ++D+  + G +D AL
Sbjct: 426 LNFFESMRLD-YSIEPTMKHYTLIVDLLGRAGRLDEAL 462



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 137/339 (40%), Gaps = 70/339 (20%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +IS      S++ A ++F      ++  ++ +I G A++ +F  ++S F+ M    IRPD
Sbjct: 78  LISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPD 137

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL----------- 474
             TL  V+ +   LV +  G+ +H  + K GL+ +S +  +L+DMY+K+           
Sbjct: 138 RLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFD 197

Query: 475 -------------------GC-----VDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD- 509
                              GC     +  A  +F    E+   SWN+LI GF  NG  D 
Sbjct: 198 ESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDR 257

Query: 510 ------------------------------KSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
                                         K+L MF  M + GV PN++T V  L AC  
Sbjct: 258 ARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTK 317

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +G +  G R  N  +  +  + N      +VD+  + G +K A  +        D+ TW 
Sbjct: 318 IGALQVGERIHN-YLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETK-GKDLLTWS 375

Query: 600 ALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLS 636
            ++     HG  D  +   V  K   + PD   F  +L+
Sbjct: 376 VMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILT 414


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 408/773 (52%), Gaps = 85/773 (10%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA--ICLYKLMLNNNVGVDNYTYPLL 137
            +S +  +F  + SP+   +N ++RAY   +    A  + LY+ ML + V  +NYT+P  
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +A +       G+ IH H + AG  +D++V+  L++MY  C  L  A  +F   P  DL
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 198 VSWNSILAGYVNADNVEE--AKFIYNKMPERNIIASNSMIV----LFGRKGNVAE----- 246
           V+WN++LAGY +        A  +  +M    +  + S +V    L  ++G +A+     
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 247 -----AC-----------------------------------RLFKEMPKKDLVSWSALI 266
                AC                                   R+F  MP ++ V+WSALI
Sbjct: 252 AYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 267 SCYEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
             +       +A +LF  M+   +  +    + S L ACA+L  ++ G  +HAL  K G+
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +   N+L+ MY+  G I  A  LFD     D +S+++++SGY++ G  E        
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE-------- 423

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                  E   +F +MQ   + PD AT+VS+I AC+HL AL  G
Sbjct: 424 -----------------------EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           +  H  +   GL   + +   LIDMY K G +D + +VF+    + + SWN +I G+ ++
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL  ++  +F EM   G  P+ +TF+ +L AC H GLV EG   F+ M   + L P  +H
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEH 580

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLL R G L EA E I+SMP+  DV  W ALLGAC+ + + ++G++V R + EL 
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+  G  VLLSNI+++ GR+D+  EVR +   +G  K PGCS IE NG +H F+ GD++H
Sbjct: 641 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ  EI   LD +   +K  GY PDT  V  D+++EEKE  L  HSEKLAIA+G++++S 
Sbjct: 701 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSE 760

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              I + KNLR+C DCHT  K IS    R I+VRD +RFHHFK+G CSC DFW
Sbjct: 761 DKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 183/405 (45%), Gaps = 54/405 (13%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA--LVLFMNMIDHRVMVDEVVVVS 299
           G+++ A  LF ++P  D+ +++ LI  Y  +     A  L L+  M+ HRV  +      
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
            L AC+ L     G ++H  A+  G++  + +  AL+ MY  C  +  A  +F      D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS--LFMEM 417
           L++WN+M                               ++GYA H  +   ++  L M+M
Sbjct: 191 LVAWNAM-------------------------------LAGYAHHGMYHHAVAHLLSMQM 219

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IR---------KNGLKINSILGTTL 467
           Q H +RP+ +TLV+++       AL QG  +HAY IR         K+ L    +LGT L
Sbjct: 220 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTAL 279

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG---VT 524
           +DMY K G +  A  VF     +   +W+ALI GF +     ++  +F  M   G   ++
Sbjct: 280 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P  I     L AC  +  +  G +  ++++ +  +  +      ++ +  +AG++ +A  
Sbjct: 340 PTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
           L + M +  D  ++ AL+    ++G  E    V +K+    ++PD
Sbjct: 397 LFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 24/253 (9%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS--ETLSLFMEMQHHGIRPDEA 427
           ++  G + +A  LFD +   DV +++ +I  Y+     +  + L L+  M  H + P+  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T    + AC+ L     G+ IH +    GL+ +  + T L+DMY+K  C+ +A  +F   
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLE--MFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             + + +WNA++ G+A +G+   ++   +  +M+   + PN  T V +L      G + +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 546 GHRHFNSMIQEHRLEP------NSKHY--------GCMVDLLGRAGMLKEAEELIESMPM 591
           G     + +  +R+        NSK            ++D+  + G L  A  + ++MP 
Sbjct: 247 G-----TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 301

Query: 592 SPDVATWGALLGA 604
             +V TW AL+G 
Sbjct: 302 RNEV-TWSALIGG 313


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/809 (31%), Positives = 421/809 (52%), Gaps = 76/809 (9%)

Query: 32  ILETHLQKCQSFKQFTQ---ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           +L + L  C   K F Q   I +Q+      ++TF  + LI      L F     + ++F
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIAL---YLGFGSFKLAERVF 202

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
             +   +   FNT++  + Q    + A+ ++  M  + +  D  T   L  A A    + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +GK +H ++LKAG   D     +L+++Y  CGD+  A  +F+     ++V WN +L  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 209 NADNVEEAKFIYNKMP---------------------------------------ERNII 229
              ++ ++  I+ +M                                        E ++ 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S  +I ++ +   + +A ++ + + K+D+VSW+++I+ Y Q++  EEAL  F  M D  
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D + + S  SACA +  ++ G  +HA                               
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHA------------------------------- 471

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +++ +G+  D+  WN++++ Y +CG  E+A +LF  +  KD ++W+ +ISG+ Q   + +
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQ 531

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L +FM+M   G + +  T +S ISA  +L  + QGK +H    K G    + +   LI 
Sbjct: 532 ALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           +Y K G +++A  +F     +   SWN +I   + +G   ++L++F +MK+ G+ PN++T
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+GVL AC H+GLV+EG  +F SM   + L P   HY C+VD+LGRAG L  A   ++ M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P++ +   W  LL ACK H + E+GE   + L+EL+P     +VLLSN +A  G+W +  
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           +VR MM  RG+ K PG S IE    +H F  GDR HP  ++I   L E+  +L   GY  
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQ 831

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           +   +  + +QE+K+ T F HSEKLA+AFGL+T+ P  P+R++KNLR+C+DCH+  KF S
Sbjct: 832 ENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTS 891

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               REIV+RD +RFHHF  GSCSC D+W
Sbjct: 892 EVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 219/489 (44%), Gaps = 72/489 (14%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH   +  G  +D  + N LI++YA  G +  AR++F E    D VSW ++L+GY     
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 213 VEEAKFIYNKM------PERNIIAS---------------------------------NS 233
            +EA  +Y++M      P   +++S                                 N+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L+   G+   A R+F +M   D V+++ LIS + Q    E AL +F  M    +  D
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V V S+L+ACA++  ++ G  +H+  +K G+      + +L+ +Y  CG+I TA  +F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
            G   +++ WN                                M+  Y Q    +++  +
Sbjct: 305 LGDRTNVVLWN-------------------------------LMLVAYGQISDLAKSFEI 333

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F +MQ  GI P++ T   ++  CT    ++ G+ IH+   KNG + +  +   LIDMY K
Sbjct: 334 FGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSK 393

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
             C+D A ++    E++ V SW ++I G+  +   +++L  F EM+  GV P+ I     
Sbjct: 394 YRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASA 453

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
             AC  +  + +G    ++ +       +   +  +V+L  R G  +EA  L   +    
Sbjct: 454 ASACAGIKAMRQG-LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKD 512

Query: 594 DVATWGALL 602
           ++ TW  L+
Sbjct: 513 EI-TWNGLI 520



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 2/250 (0%)

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G   D +  N +I  Y K G V +AR +F  +  +D VSW  M+SGYAQ     E   L+
Sbjct: 73  GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLY 132

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M    + P    L SV+SACT      QG+ IHA + K      + +G  LI +Y+  
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G    A  VF         ++N LI G A  G  + +L++F EM+ SG+ P+ +T   +L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC  +G + +G +  +S + +  +  +    G ++DL  + G ++ A ++  ++    +
Sbjct: 253 AACASVGDLQKG-KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTN 310

Query: 595 VATWGALLGA 604
           V  W  +L A
Sbjct: 311 VVLWNLMLVA 320



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 44/258 (17%)

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-----IHAYIRKNGLKI 459
           D   + LSL      H      A L   + AC         +W     IHA     GL  
Sbjct: 21  DNPEKILSLVAAKASHHRALGSADLTCALQACRG----RGNRWPLVLEIHATSVVRGLGA 76

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           + ++G  LID+Y K G V  A +VF     +   SW A++ G+A  GL  ++  ++S+M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMH 136

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            + V P       VL AC    L  +G R  ++ + +      +     ++ L    G  
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHAQVYKQAFCSETFVGNALIALYLGFGSF 195

Query: 580 KEAE-------------------------------ELIESMPMS---PDVATWGALLGAC 605
           K AE                               ++ + M +S   PD  T  +LL AC
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 606 KKHGDHEMGERVGRKLVE 623
              GD + G+++   L++
Sbjct: 256 ASVGDLQKGKQLHSYLLK 273


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/721 (34%), Positives = 402/721 (55%), Gaps = 63/721 (8%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           ++  TY  + Q  A   S+ +GK +H  +       D  +   L+++YA CGDL   R++
Sbjct: 97  LETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE-A 247
           FD     ++  WN +++ Y    + +E+  ++  M E+ I            +G   E A
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESA 204

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             LF ++  +D++SW+++IS Y  N + E  L ++  M+   + VD   ++SVL  CAN 
Sbjct: 205 SELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANS 264

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G +VH+LA+K   E  IN  N L+ MYS CG++  A ++F+     +++SW SMI
Sbjct: 265 GTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 368 SGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQ----------HD-------- 405
           +GY + G  + A  L   M    ++ DVV+ ++++   A+          HD        
Sbjct: 325 AGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNME 384

Query: 406 -----------------QFSETLSLFMEMQHHGI----------RPDEATLVSVISACTH 438
                                  S+F  M    I          +PD  T+  ++ AC  
Sbjct: 385 SNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACAS 444

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL++GK IH YI +NG   +  +   L+D+Y+K G +  A  +F     K + SW  +
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVM 504

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+ M+G  ++++  F+EM+ +G+ P+E++F+ +L AC H GL+++G R F  M  +  
Sbjct: 505 ISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP  +HY CMVDLL R G L +A E IE++P++PD   WGALL  C+ + D E+ E+V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++ EL+P++ G++VLL+NI+A   +W++V  +R  + ++G+ K PGCS IE  G ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLF 684

Query: 679 LAGDR-THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           ++G+  +HP   +I+++L +M +K+K EGY P T     + D+ +KE  L  HSEKLA+A
Sbjct: 685 VSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+ + P   +R+ KNLR+C DCH  AKF+S+   REIV+RD +RFHHFK+G CSC  F
Sbjct: 745 FGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGF 804

Query: 798 W 798
           W
Sbjct: 805 W 805



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 193/447 (43%), Gaps = 99/447 (22%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLLAQASALRLSVFEGKLIHDH 156
           +N+M+  Y+   + ++ + +YK M+   + VD  T    L+  A++  LS+  GK +H  
Sbjct: 219 WNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSL--GKAVHSL 276

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K+ F+  +  +NTL++MY+ CGDL  A ++F++    ++VSW S++AGY      + A
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 217 KFIYNKMP---------------------------------------ERNIIASNSMIVL 237
             +  +M                                        E N+   N+++ +
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++  A  +F  M  KD++SW+ +I                       +  D   +
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
             +L ACA+L+ ++ G  +H   ++ G     ++ NAL+ +Y  CG +  A  LFD   +
Sbjct: 436 ACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL+SW  MISGY                                 H   +E ++ F EM
Sbjct: 496 KDLVSWTVMISGY-------------------------------GMHGYGNEAIATFNEM 524

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLG 475
           +  GI PDE + +S++ AC+H   L+QG W   YI KN   I   L     ++D+  + G
Sbjct: 525 RDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583

Query: 476 CVDNALEVFHGTE-EKGVSSWNALIIG 501
            +  A E           + W AL+ G
Sbjct: 584 NLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 185/411 (45%), Gaps = 39/411 (9%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTM 102
           T  L + + +  I  TF   R I FS  LL       ++  + ++F  +   N   + +M
Sbjct: 266 TLSLGKAVHSLAIKSTF--ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +  Y +      AI L + M    V +D      +  A A   S+  GK +HD++     
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS--------------ILAGYV 208
           +S+++V N L++MY  CG +  A  +F    V D++SWN+              IL    
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACA 443

Query: 209 NADNVEEAKFIYNKMPERNIIAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           +   +E  K I+  +  RN  +S     N+++ L+ + G +  A  LF  +P KDLVSW+
Sbjct: 444 SLSALERGKEIHGYIL-RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVK 322
            +IS Y  +    EA+  F  M D  +  DEV  +S+L AC++  +++ G    + +   
Sbjct: 503 VMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG-----SVE 377
             IE  +     ++ + S  G ++ A +  +       I+ ++ I G L CG      +E
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP----IAPDATIWGALLCGCRIYHDIE 618

Query: 378 KARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
            A  + + + E   ++   +  + + YA+ +++ E   +  ++   G+R +
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKN 669



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 55/286 (19%)

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           I++ V  ++  I  + Q       + L    Q   +  +  T  SV+  C    +L  GK
Sbjct: 62  IDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTDGK 119

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE------------------ 488
            +H+ I+ N + ++ +LG  L+ +Y   G +     VF   E                  
Sbjct: 120 KVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 489 -------------EKGVS--------------------SWNALIIGFAMNGLADKSLEMF 515
                        EKG+                     SWN++I G+  NGL ++ LE++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIY 239

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            +M   G+  +  T + VL  C + G +  G +  +S+  +   E        ++D+  +
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSK 298

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
            G L  A  + E M    +V +W +++    + G  +   R+ +++
Sbjct: 299 CGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQM 343


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/512 (44%), Positives = 330/512 (64%)

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           E  K +   W++ +    + +   +A++LF  +  + V  D     SVL AC NL  +  
Sbjct: 87  EKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN 146

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H +  K+G    + LQN ++H+Y+SCGE+  A  LF+     D+++WN MI+  +K
Sbjct: 147 GRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G  E A  LF  M E++V SW++MI+GY Q  +  E + LF +M+  G++ +E T+V+V
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           ++AC  L ALD G  IH Y  ++G K N  +  TLIDMY+K GC++ A +VF   EE+ V
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTV 326

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW+A+I G AM+G A+++L +FS+M + G+ PN +TF+G+L AC HMGL+ EG R F S
Sbjct: 327 VSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFAS 386

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M +++ + P  +HYGCMVDLL RAG+L EA E I +MPM P+   WGALLGAC+ H + E
Sbjct: 387 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 446

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           M E   + L+EL P +DG++V+LSNI+A  GRW+D   VR  M  R V K PG S I  +
Sbjct: 447 MAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G++HEF+AG+ +HP   +I    +E+ ++++L+GY P+T  V  DI++ EK   + RHSE
Sbjct: 507 GVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
           KLA+ FGL+      PIRIMKNLRIC DCH+A
Sbjct: 567 KLALVFGLMNTPAETPIRIMKNLRICEDCHSA 598


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/792 (34%), Positives = 408/792 (51%), Gaps = 76/792 (9%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I   +I  GL+ D F  + LI        F  +  + K+F ++   N   +N+++  + +
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYG---KFGFVDAAVKVFHYMPVRNLVSWNSIISGFSE 109

Query: 109 RNVPQQAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
               +    +   M+    G+  D  T   +    A  + V  G  IH   +K G   DV
Sbjct: 110 NGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDV 169

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
            VNN+L++MY+ CG L+ A+ LFD++   + VSWN+++ G      + EA  ++ +M  +
Sbjct: 170 RVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQ 229

Query: 227 NIIASNSMIVL----------------------------------------FGRKGNVAE 246
             I  N + VL                                        + + G +  
Sbjct: 230 EDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLIC 289

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F  M  K + SW+ALI    QN    +AL L++ M    ++ D   + S+L A A+
Sbjct: 290 AERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L  ++ G  VH   ++ G+E                               +D     S+
Sbjct: 350 LKSLRYGKEVHGFVLRHGLE-------------------------------IDSFIGISL 378

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           +S Y+ CG    AR LFD M EK  VSW+ MISGY+Q+    + L LF ++   G +P +
Sbjct: 379 LSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSD 438

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             +VSV+ AC+   AL  GK  H Y  K  L  +  +  + IDMY K GC+  +  VF G
Sbjct: 439 IAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDG 498

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            + K ++SWNA+I  + ++G  ++S+E+F  M+K G  P+  TF+G+L  C H GLV+EG
Sbjct: 499 LKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEG 558

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            ++FN M   H +EP  +HY C++D+LGRAG L +A  L+  MP  PD   W +LL  C+
Sbjct: 559 LKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCR 618

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
             G+ E+G+ V  KL+EL+P +   +V LSN++A  GRWDDV  VR M+   G+ K  GC
Sbjct: 619 NFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGC 678

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE  G +H F+AGD   PQ  E+     ++ KK+   GY P+T  V  D+D+E+K   
Sbjct: 679 SWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEK 738

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLAI FGL+  +    +RI KNLRIC DCH A+KF+S    REI++RD  RFHH
Sbjct: 739 LRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHH 798

Query: 787 FKHGSCSCMDFW 798
           FK G CSC D+W
Sbjct: 799 FKDGLCSCGDYW 810



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/574 (27%), Positives = 278/574 (48%), Gaps = 79/574 (13%)

Query: 103 MRAYIQRN-VPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA 160
           M   + RN +   AI ++ KL+ +     DN+T+P + +A    L    G++IH  V+K 
Sbjct: 1   MHVAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKM 60

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY------------- 207
           G   DV+V N LI MY   G + AA K+F   PV +LVSWNSI++G+             
Sbjct: 61  GLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDML 120

Query: 208 VNADNVEE----------------AKFIYNKMPER------------NIIASNSMIVLFG 239
           V     EE                A+ +  +M  R            ++  +NS++ ++ 
Sbjct: 121 VEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYS 180

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVV 298
           + G + EA  LF +  +K+ VSW+ +I          EA  LF  M +   + V+EV V+
Sbjct: 181 KCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVL 240

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++L AC  ++ +++   +H  +++ G +    + N  +  Y+ CG +  AE++F +    
Sbjct: 241 NILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETK 300

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            + SWN++I G  + G   KA                               L+L+++M 
Sbjct: 301 TVNSWNALIGGCAQNGDPRKA-------------------------------LNLYIQMT 329

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
           + G+ PD  T+ S++ A  HL +L  GK +H ++ ++GL+I+S +G +L+ +Y+  G   
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           +A  +F G EEK   SWNA+I G++ NGL + +L +F ++   G  P++I  V VLGAC 
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACS 449

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEAEELIESMPMSPDVAT 597
               +  G       ++   +E       C  +D+  ++G +KE+  + + +  + D+A+
Sbjct: 450 QQSALRLGKETHCYALKALLME--DVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLAS 506

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           W A++ A   HGD E    +  ++ ++    DGF
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGF 540



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 178/395 (45%), Gaps = 38/395 (9%)

Query: 271 QNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           +NE+Y +A+ +F+ +I D     D      V+ AC        G  +H + +K+G+   +
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            + NALI MY   G +  A K+F      +L+SWNS+ISG+ + G    ++  FD ++E 
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF---SKDCFDMLVE- 122

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                  M++G                    G+ PD ATLV+V+  C   V +  G  IH
Sbjct: 123 -------MMAG------------------EEGLLPDIATLVTVLPVCAREVDVQMGIRIH 157

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
               K GL  +  +  +L+DMY K G +  A  +F     K   SWN +I G    G   
Sbjct: 158 GLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIF 217

Query: 510 KSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           ++  +F EM+ +  +  NE+T + +L AC  +  +    +  +     H  + +      
Sbjct: 218 EAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL-RSLKELHGYSIRHGFQYDELVANG 276

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
            V    + GML  AE +  SM  +  V +W AL+G C ++GD      +  ++       
Sbjct: 277 FVAAYAKCGMLICAERVFYSME-TKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVP 335

Query: 629 DGFHV---LLSNIHASKGRWDDVLEVRGMMVRRGV 660
           D F +   LL++ H    R+    EV G ++R G+
Sbjct: 336 DWFTIGSLLLASAHLKSLRYGK--EVHGFVLRHGL 368


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/667 (37%), Positives = 385/667 (57%), Gaps = 38/667 (5%)

Query: 97  FIFNTMMRAYIQRNV----PQQAICLYKLMLNNNVGVDNYTYPLLAQ-ASALRLSVFEGK 151
           F+F+T +RA  +       P     L++ M    V  D +T+  L + +S+ R       
Sbjct: 6   FLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCT 65

Query: 152 LIHDHVLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           ++H   L+    S   +V N+LI+MY   G     R+ FDE PV D VSW  +++G    
Sbjct: 66  MLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISG---- 121

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                                        + G +++A  L  + P +D++SW++LI+ Y 
Sbjct: 122 ---------------------------LAKMGMLSDARLLLAQAPVRDVISWTSLIAAYS 154

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           + +  +EA+  F NM+   +  D+V V+ VLSAC+ L  ++ G S+H L  + G+    N
Sbjct: 155 RADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSEN 214

Query: 331 LQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
           L  ALI MY+ CG+   A ++FDA G      SWN++I GY K G V+ AR+LFD M  +
Sbjct: 215 LVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVR 274

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           D++++++MI+GY    Q  E L LFM M+ H +R D  T+VS++SAC  L AL QG+ +H
Sbjct: 275 DIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALH 334

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           A I    ++ +  +GT L+DMYMK G V+ A  VF    ++ V +W A+I G A NG+  
Sbjct: 335 ACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGK 394

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
             LE F +M+  G  PN ++++ VL AC H  L++EG  +F+ M   + + P  +HYGCM
Sbjct: 395 AGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCM 454

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           +DLLGR+G+L EA +L+++MPM P+   W ++L AC+ H   ++ +     L++++PD D
Sbjct: 455 IDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDED 514

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             +V L NI     +W+D  ++R +M  R V K  G S +   G +H+F+  D++HP+I 
Sbjct: 515 AVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRIL 574

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           EI  ML+E++ +LK  GY+P T +V  D+D+EEKE TL  HSEKLAIAFGL++++P  P+
Sbjct: 575 EIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPV 634

Query: 750 RIMKNLR 756
            I+KNLR
Sbjct: 635 HIIKNLR 641



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/618 (22%), Positives = 270/618 (43%), Gaps = 80/618 (12%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
             N M+  +I+  +  +A  +Y+ M+ + +    +T+  +        S +E   +H  VL
Sbjct: 703  LNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVC----STYEALQLHGRVL 758

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG------------ 206
              G   + +V + L+N Y       AA  LF E P+ +    N +L G            
Sbjct: 759  ALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELIC 818

Query: 207  ------------------------YVNADNVEEAKFIYNKMPE-----RNIIASNSMIVL 237
                                    Y N + +E+ + ++  + +      NI  SNS++ L
Sbjct: 819  CFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDL 878

Query: 238  FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
            +   G+  +  +   ++  +D++SW++++S Y      +EA+     M+ H  M      
Sbjct: 879  YSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSF 938

Query: 298  VSVLSACANLTVVKAGTSVHALAVKIGIECY-INLQNALIHMYSSCGEITTAEKLFDAGH 356
            VS+L+        + G  +H +  K+G  C  +++Q  LI MY  C     +  +F+   
Sbjct: 939  VSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 998

Query: 357  NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
            ++ L   NS+I+  L C        +FDA +E                        +   
Sbjct: 999  SIALECCNSLITSSLGCN-------MFDAALE------------------------ILHC 1027

Query: 417  MQHHGIRPDEATLVSVISACTHLVA--LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M   G+ PD+ T  + + A +   +  L   + +H+ + K G +++  + ++LI  Y   
Sbjct: 1028 MIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACA 1087

Query: 475  GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
            G + ++  +F G  +  V  + A+I   A  G   +++E+F +M  SG+ P+ +TF+  +
Sbjct: 1088 GQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAI 1147

Query: 535  GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
              C   G+ +EG      M     L+P+ +H+ CMV+LL R G +KEA E++E  P+   
Sbjct: 1148 AGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHY 1207

Query: 595  VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
               W +LL +CK HG++ +G+R    L+++        + +SN     G  +  L ++ M
Sbjct: 1208 TKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEM 1267

Query: 655  MVRRGVVKIPGCSMIEAN 672
               + V K  G S+IE +
Sbjct: 1268 TNVKEVKK-SGHSLIEVS 1284



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 217/477 (45%), Gaps = 68/477 (14%)

Query: 19   NAKPIFKPTINLSILETH------LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFS 72
             A+ +++  +   I ET       L  C +++   Q+  +++  GL  + F  S L+   
Sbjct: 718  RARAVYRWMVASGIRETPHTFSTILGVCSTYEAL-QLHGRVLALGLCCNPFVGSALVNHY 776

Query: 73   TDLLPFIEMSYS-FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN 131
                  +E  ++   +F  L   N  + N ++R      + ++ IC +  M    + ++ 
Sbjct: 777  M----HVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNG 832

Query: 132  YTYPLLAQASALRLSVFE-GKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLF 189
             +Y    +         E G+ +H  VLKAG+  S+++++N+L+++Y+  GD     K  
Sbjct: 833  LSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKAL 892

Query: 190  DESPVLDLVSWNSILAGYVNADNVEEAKFI------YNKMPE-RNIIA------------ 230
            ++    D++SWNSIL+ Y +  +++EA +       + KMP  R+ ++            
Sbjct: 893  NDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQ 952

Query: 231  ---------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                   ++I ++G+      +  +F E+P   L   ++LI+  
Sbjct: 953  LGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSS 1012

Query: 270  EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS---VHALAVKIGIE 326
                M++ AL +   MI   V  D+V   + + A  +L+   + TS   +H+  VK+G E
Sbjct: 1013 LGCNMFDAALEILHCMIVEGVTPDDVTFSATMKA-ISLSASPSLTSCQMLHSCLVKLGFE 1071

Query: 327  CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
              + + ++LI  Y+  G+++++  +F+   + ++I + ++IS   + G   +A  LFD M
Sbjct: 1072 MDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQM 1131

Query: 387  I----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDE---ATLVSVIS 434
            +    + D V++   I+G  Q   F E   L +E+      + PDE   A +V+++S
Sbjct: 1132 VSSGLKPDNVTFLCAIAGCDQAGMFEEG-RLVIELMRASRELDPDERHFACMVNLLS 1187



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 45/224 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +E  +   FN+M+  YI     ++A+ L+  M  +++ VDN+T   L  A A   +
Sbjct: 267 LFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGA 326

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +G+ +H  +     ++D+Y+   L++MY  CG ++ A  +F      D+ +W +++AG
Sbjct: 327 LPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAG 386

Query: 207 Y---------------VNADNVE---------------------------EAKFIYNKMP 224
                           +  D  +                           E + +YN  P
Sbjct: 387 LAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHP 446

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
           +  I     MI L GR G + EA  L K MP + + V W++++S
Sbjct: 447 Q--IEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 488



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 6/225 (2%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  +DV S + MI+G+ +        +++  M   GIR    T  +++  C+   AL   
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ-- 752

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
             +H  +   GL  N  +G+ L++ YM +     AL +F     +  +  N ++ G    
Sbjct: 753 --LHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL 810

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSK 564
            L ++ +  F +M++  +  N +++   +  C   G  +++G +    +++   +  N  
Sbjct: 811 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 870

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +VDL    G   +  + +  + +S DV +W ++L      G
Sbjct: 871 LSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSILSMYADRG 914


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/549 (41%), Positives = 341/549 (62%), Gaps = 34/549 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F+ +   ++  W+  +  + + +   +A+ LF  + +  +  D      VL AC+ L  
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           V+ G  VH    K+G++  + LQN ++H+Y+ CGEI  A K+FD     D+I+WN MI+ 
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
            +K G  E A  LF  M E++V SW++MI GYAQ  +  E + LF+EM+  G+ P+E T+
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           V+V+ AC  +  L  G+ IH +  ++G + N  +  TLIDMY+K GC+++A  +F   EE
Sbjct: 249 VAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V SW+A+I G A +G A+ +L +F++M  +GV PN +TF+G+L AC HMG+V++G ++
Sbjct: 309 RTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKY 368

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F SM +++ + P  +HYGCMVDL  RAG+L+EA E I +MP++P+   WGALLG CK H 
Sbjct: 369 FASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHK 428

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++ E   R L +L P +DG++V+LSNI+A  GRW+DV  VR +M  RG          
Sbjct: 429 NVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGT--------- 479

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
                                     +++ +++KL+GY P+T  V  D+++++KE  L+R
Sbjct: 480 -------------------------WEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYR 514

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLA+ FGLI  +P   IRIMKNLR+C DCH A K IS    REIVVRDR+RFH FK+
Sbjct: 515 HSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKN 574

Query: 790 GSCSCMDFW 798
           GSCSC D+W
Sbjct: 575 GSCSCGDYW 583



 Score =  186 bits (473), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 240/533 (45%), Gaps = 110/533 (20%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           SY+  IF  L++     +NT +R++ + + P  AI L+  +   ++  D+YT   + +A 
Sbjct: 64  SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC 123

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +  L V  GK++H +V K G  S++++ N ++++YA+CG++  ARK+FD+ P  D+++WN
Sbjct: 124 SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
            ++A  V   + E A  ++ +MPERN+ +  SMI  + + G   EA  LF EM       
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEME------ 237

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
                                    D  ++ +EV VV+VL ACA++  +  G  +H  + 
Sbjct: 238 -------------------------DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSN 272

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           + G E  I + N LI MY  CG +  A ++FD      ++SW++MI+G    G  E A A
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF+ MI                                 G++P+  T + ++ AC+H+  
Sbjct: 333 LFNKMINT-------------------------------GVKPNAVTFIGILHACSHMGM 361

Query: 442 LDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +++G K+  +  R  G+         ++D++ + G +  A E                  
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHE------------------ 403

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEH 557
            F MN                 + PN + +  +LG C   +++ L +E  RH +      
Sbjct: 404 -FIMN---------------MPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLS------ 441

Query: 558 RLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +L+P N  +Y  + ++   AG     E++     +  D  TW  LL   K  G
Sbjct: 442 KLDPLNDGYYVVLSNIYAEAG---RWEDVARVRKLMRDRGTWEKLLQRMKLKG 491



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 33/269 (12%)

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S   A+ +F  +   +V  W+T +  +A+ D  ++ +SLF  ++   I PD  T   V+ 
Sbjct: 62  SFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLK 121

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY----------------------- 471
           AC+ L+ +  GK +H Y+ K GL+ N  L   ++ +Y                       
Sbjct: 122 ACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVIT 181

Query: 472 --------MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
                   +K+G  + A ++F    E+ V SW ++I G+A  G + +++++F EM+ +G+
Sbjct: 182 WNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PNE+T V VL AC  MG +  G R  +        E N +    ++D+  + G L++A 
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDAC 300

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHE 612
            + ++M     V +W A++     HG  E
Sbjct: 301 RIFDNME-ERTVVSWSAMIAGLAAHGRAE 328


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/708 (34%), Positives = 388/708 (54%), Gaps = 69/708 (9%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           D  T   L Q  A    + +GK +H  +++ G   + +++N  +N+Y+ CG+L    KLF
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS------------------ 231
           D+    ++VSW SI+ G+ +    +EA   + +M     IA+                  
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 232 ---------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                                +++  ++ + G +++AC+ F+EMP KD V W+++I  + 
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           +N  +++AL  +M M+   V +D+ V+ S LSAC+ L     G S+HA  +K+G E    
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + NAL  MYS  G++ +A  +F    + D IS                            
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQI--HSDCIS---------------------------- 343

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           +VS + +I GY + DQ  + LS F++++  GI P+E T  S+I AC +   L+ G  +H 
Sbjct: 344 IVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHG 403

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + K   K +  + +TL+DMY K G  D+++++F   E     +WN L+  F+ +GL   
Sbjct: 404 QVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRN 463

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E F+ M   G+ PN +TFV +L  C H G+V++G  +F+SM + + + P  +HY C++
Sbjct: 464 AIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVI 523

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG LKEAE+ I +MP  P+V  W + LGACK HGD E  +    KL++L+P++ G
Sbjct: 524 DLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSG 583

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            HVLLSNI+A + +W+DV  +R M+    + K+PG S ++     H F   D +HPQ  E
Sbjct: 584 AHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKE 643

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   LD +  ++K  GY P T  V  D+D   KE  L  HSE++A+AF L+T     PI 
Sbjct: 644 IYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPII 703

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + KNLR+C+DCH+A KFIS+  +R I+VRD  RFHHF +GSCSC D+W
Sbjct: 704 VKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 189/431 (43%), Gaps = 48/431 (11%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+ + +I  G + +TF ++  +   +      E+ Y+ K+F  +   N   + +++  + 
Sbjct: 96  QLHAMLIRGGCLPNTFLSNHFLNLYSKCG---ELDYTIKLFDKMSQRNMVSWTSIITGFA 152

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
             +  Q+A+  +  M         +    + QA     ++  G  +H  V+K GF  +++
Sbjct: 153 HNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELF 212

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--- 224
           V + L +MY+ CG+LS A K F+E P  D V W S++ G+V   + ++A   Y KM    
Sbjct: 213 VGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDD 272

Query: 225 ------------------------------------ERNIIASNSMIVLFGRKGNVAEAC 248
                                               E      N++  ++ + G++  A 
Sbjct: 273 VFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSAS 332

Query: 249 RLFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            +F+       +VS +A+I  Y + +  E+AL  F+++    +  +E    S++ ACAN 
Sbjct: 333 NVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQ 392

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             ++ G+ +H   VK   +    + + L+ MY  CG    + +LFD   N D I+WN+++
Sbjct: 393 AKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLV 452

Query: 368 SGYLKCGSVEKARALFDAMIEK----DVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGI 422
             + + G    A   F+ MI +    + V++  ++ G +      + L+ F  M+  +G+
Sbjct: 453 GVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGV 512

Query: 423 RPDEATLVSVI 433
            P E     VI
Sbjct: 513 VPKEEHYSCVI 523



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 193/431 (44%), Gaps = 55/431 (12%)

Query: 33  LETHLQKCQSFK--QF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMSYSFKIF 88
           L + LQ C S    QF TQ+   ++  G   + F  S L    TD+     E+S + K F
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNL----TDMYSKCGELSDACKAF 234

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSV 147
             +   +  ++ +M+  +++    ++A+  Y  M+ ++V +D +     L+  SAL+ S 
Sbjct: 235 EEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASS 294

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD-ESPVLDLVSWNSILAG 206
           F GK +H  +LK GF+ + ++ N L +MY+  GD+ +A  +F   S  + +VS  +I+ G
Sbjct: 295 F-GKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDG 353

Query: 207 YVNADNVEEAKFIYNKMPERNI-------------------------------------- 228
           YV  D +E+A   +  +  R I                                      
Sbjct: 354 YVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRD 413

Query: 229 -IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
              S++++ ++G+ G    + +LF E+   D ++W+ L+  + Q+ +   A+  F  MI 
Sbjct: 414 PFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIH 473

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEIT 346
             +  + V  V++L  C++  +V+ G +  +   KI G+       + +I +    G++ 
Sbjct: 474 RGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLK 533

Query: 347 TAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAM--IEKDVVSWSTMISG-YA 402
            AE    +     ++  W S +      G +E+A+   D +  +E +      ++S  YA
Sbjct: 534 EAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYA 593

Query: 403 QHDQFSETLSL 413
           +  Q+ +  SL
Sbjct: 594 KEKQWEDVQSL 604



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 9/236 (3%)

Query: 28  INLSILETHLQKCQSFK--QFTQILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYS 84
           I+  +L + L  C + K   F + L   IL  G   +TF  + L    +     +  S  
Sbjct: 275 IDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNV 334

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           F+I +  +  +      ++  Y++ +  ++A+  +  +    +  + +T+  L +A A +
Sbjct: 335 FQIHS--DCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQ 392

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             +  G  +H  V+K  F  D +V++TL++MY  CG    + +LFDE    D ++WN+++
Sbjct: 393 AKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLV 452

Query: 205 AGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
             +        A   +N M  R    N +   +++      G V +    F  M K
Sbjct: 453 GVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEK 508


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 277/884 (31%), Positives = 460/884 (52%), Gaps = 119/884 (13%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI-KFSTDLLPFIEMSYSFK 86
           ++ + +   L    +  +  +I + +I  GL    F + +LI K+S    P   +S   +
Sbjct: 5   VSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRR 64

Query: 87  IFAFLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +     SP  N +I+N+++RA+ +     +A+  Y  +  + V  D YT+P + +A A  
Sbjct: 65  V-----SPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                G L++  +L+ GF+SD+YV N L++MY+  G LS AR++FDE PV DLVSWNS++
Sbjct: 120 FDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLI 179

Query: 205 AGYVNADNVEEAKFIYNKM------PERNIIAS--------------------------- 231
           +GY +    EEA  IY+++      P+   ++S                           
Sbjct: 180 SGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVN 239

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                 N ++ ++ +     +A R+F EM  +D V+++ +I  Y + EM EE++ +F+  
Sbjct: 240 SVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN 299

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +D +   D + V SVL AC +L  +     ++   ++ G      ++N LI +Y+ CG++
Sbjct: 300 LD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDM 358

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKD------VVSWS 395
            TA  +F++    D +SWNS+ISGY++ G + +A  LF  M+    + D      ++S S
Sbjct: 359 ITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLS 418

Query: 396 T-----------------------------MISGYAQHDQFSETLSLFMEM--------- 417
           T                             +I  YA+  +  ++L +F  M         
Sbjct: 419 TRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWN 478

Query: 418 ----------------------QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                                 + + + PD AT +  +  C  L A   GK IH  + + 
Sbjct: 479 TVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRF 538

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G +    +G  LI+MY K GC++++  VF     + V +W  +I  + M G  +K+LE F
Sbjct: 539 GYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESF 598

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            +M+KSG+ P+ + F+ ++ AC H GLV++G   F  M   ++++P  +HY C+VDLL R
Sbjct: 599 VDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           +  + +AEE I++MP+ PD + W ++L AC+  GD E  ERV R+++EL PD  G+ +L 
Sbjct: 659 SQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN +A+  +WD V  +R  +  + + K PG S IE    +H F +GD + PQ   I   L
Sbjct: 719 SNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSL 778

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKN 754
           + +   +  EGY PD+ EV+ ++++EE++  L   HSE+LAIAFGL+   P  P+++MKN
Sbjct: 779 EILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKN 838

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C+DCH   K IS+   REI+VRD +RFH FK G CSC D W
Sbjct: 839 LRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/701 (35%), Positives = 400/701 (57%), Gaps = 46/701 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y + ++P  A+ L+  M + ++G  N    L+A  S  R ++ +       + 
Sbjct: 51  YNALIAGYFRNHLPDAALGLFHRMPSRDLGSYN---ALIAGLSLRRHTLPDAAAA---LA 104

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
                  V    +L+  Y   G L+ A +LF + P  + V++  +L G+++A  V EA+ 
Sbjct: 105 SIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARK 164

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++MP+++++A  +M+  + + G + EA  LF EMPK+++VSW+A+IS Y QN     A
Sbjct: 165 LFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILA 224

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
             LF  M D     +EV   ++L                                     
Sbjct: 225 RKLFEVMPDR----NEVSWTAMLVG----------------------------------- 245

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y   G +  AE LF+A  +  + + N+M+ G+ + G V+ A+A+F+ M  +D  +WS MI
Sbjct: 246 YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMI 305

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             Y Q++   E LS F EM   GIRP+  + +S+++ C  L   D G+ +HA + +    
Sbjct: 306 KVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFD 365

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +    + LI MY+K G +D A  VF+  E K V  WN++I G+A +GL +++L +F ++
Sbjct: 366 TDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDL 425

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + + + P+ IT++GVL AC + G V EG   FNSM     +   + HY CMVDLLGRAG+
Sbjct: 426 RLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGL 485

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           + EA +LI +MP+ PD   WGAL+GAC+ H + E+ E   +KL+EL+P   G +VLLS+I
Sbjct: 486 VDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHI 545

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDE 697
           + S GRW+D  ++R  +  R + K PGCS IE N ++H F +GD  +HP+   I NML+E
Sbjct: 546 YTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEE 605

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +   L   GY+ D   V  D+D+E+K  +L  HSE+ A+A+GL+ +    PIR+MKNLR+
Sbjct: 606 LDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRV 665

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A K I++   REI++RD +RFHHFK G CSC D+W
Sbjct: 666 CGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 201/439 (45%), Gaps = 72/439 (16%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   F +++R Y++  +   AI L+  M   N    + TY +L         V E + +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPERN----HVTYTVLLGGFLDAGRVNEARKL 165

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI---------- 203
            D +     D DV     +++ Y   G ++ AR LFDE P  ++VSW ++          
Sbjct: 166 FDEMP----DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKV 221

Query: 204 ---------------------LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242
                                L GY+ A +VE+A+ ++N MP+  + A N+M+V FG+ G
Sbjct: 222 ILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHG 281

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            V  A  +F+ M  +D  +WSA+I  YEQNE   EAL  F  M+   +  +    +S+L+
Sbjct: 282 MVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILT 341

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
            CA L     G  +HA  ++   +  +   +ALI MY  CG +  A+++F+     D++ 
Sbjct: 342 VCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVM 401

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WNSMI+GY                               AQH    E L +F +++   +
Sbjct: 402 WNSMITGY-------------------------------AQHGLGEEALGIFDDLRLARM 430

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNAL 481
            PD  T + V++AC++   + +G+ I   +  N  +++ +   + ++D+  + G VD AL
Sbjct: 431 APDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEAL 490

Query: 482 EVFHGTE-EKGVSSWNALI 499
           ++ +    E     W AL+
Sbjct: 491 DLINNMPVEPDAIIWGALM 509


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 283/854 (33%), Positives = 428/854 (50%), Gaps = 121/854 (14%)

Query: 66  SRLIK------FSTDLLPFIEMSYSFK----IFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
           +RL+K       +T LL   E   S K    +F  +     F +N MM A++      +A
Sbjct: 70  ARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEA 129

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           I LYK M    V +D  T+P + +A         G  IH   +K GF   V+V N LI M
Sbjct: 130 IELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAM 189

Query: 176 YAVCGDLSAARKLFDESPV--LDLVSWNSILAGYVNADNVEEAKFIYNKMPE-------- 225
           Y  CGDL  AR LFD   +   D VSWNSI++ +V      EA  ++ +M E        
Sbjct: 190 YGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTY 249

Query: 226 -------------------------------RNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                           ++  +N++I ++ + G + +A R+F  M
Sbjct: 250 TFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM 309

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +D VSW+ L+S   QNE+Y +AL  F +M +     D+V V+++++A      +  G 
Sbjct: 310 LCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGK 369

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY---- 370
            VHA A++ G++  + + N LI MY+ C  +      F+  H  DLISW ++I+GY    
Sbjct: 370 EVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNE 429

Query: 371 ---------------------LKCGSVEKA-------------------RALFDAMIEKD 390
                                +  GSV +A                   R L D M++  
Sbjct: 430 CHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNA 489

Query: 391 VV-------------------------SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +V                         SW++MI+    +    E L LF  ++   I+PD
Sbjct: 490 IVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPD 549

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
              ++S +SA  +L +L +GK IH ++ + G  +   + ++L+DMY   G V+N+ ++FH
Sbjct: 550 SIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFH 609

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             +++ +  W ++I    M+G  ++++ +F +M    V P+ ITF+ +L AC H GL+ E
Sbjct: 610 SVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVE 669

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G R F  M   ++LEP  +HY CMVDLL R+  L+EA + + SMP+ P    W ALLGAC
Sbjct: 670 GKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGAC 729

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
             H + E+GE   ++L++    + G + L+SNI A+ GRW+DV EVR  M   G+ K PG
Sbjct: 730 HIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPG 789

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL-KLEGYAPDTLEVAFDIDQEEKE 724
           CS IE +  IH F+A D++HPQ ++I   L +  K L K  GY   T  V  ++ +EEK 
Sbjct: 790 CSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKT 849

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L+RHSE+LA+ +GL+       IRI KNLRIC+DCHT  K  S    R +VVRD +RF
Sbjct: 850 QMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRF 909

Query: 785 HHFKHGSCSCMDFW 798
           HHF+ G CSC DFW
Sbjct: 910 HHFERGLCSCGDFW 923



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 251/562 (44%), Gaps = 96/562 (17%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +G+ +H  +LK+   +  ++   L++MY  CG L  A K+FDE     + +WN+++  +V
Sbjct: 64  QGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFV 121

Query: 209 NADNVEEAKFIYNKM------------PE---------------------------RNII 229
           ++    EA  +Y +M            P                              + 
Sbjct: 122 SSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVF 181

Query: 230 ASNSMIVLFGRKGNVAEACRLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
             N++I ++G+ G++  A  LF    M K+D VSW+++IS +       EAL LF  M +
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQE 241

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  +    V+ L    + + VK G  +H  A+K      + + NALI MY+ CG +  
Sbjct: 242 VGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMED 301

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           AE++F +    D +SWN                               T++SG  Q++ +
Sbjct: 302 AERVFASMLCRDYVSWN-------------------------------TLLSGLVQNELY 330

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            + L+ F +MQ+   +PD+ +++++I+A      L  GK +HAY  +NGL  N  +G TL
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K  CV +    F    EK + SW  +I G+A N    +++ +F +++  G+  + 
Sbjct: 391 IDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDP 450

Query: 528 ITFVGVLGAC---RHMGLVDEGHRH-FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           +    VL AC   +    + E H + F   + +  L+        +V++ G  G    A 
Sbjct: 451 MMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ------NAIVNVYGEVGHRDYAR 504

Query: 584 ELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLS---NI 638
              ES+  S D+ +W +++  C  +G     +      K   +QPD       LS   N+
Sbjct: 505 RAFESI-RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL 563

Query: 639 HA-SKGRWDDVLEVRGMMVRRG 659
            +  KG+     E+ G ++R+G
Sbjct: 564 SSLKKGK-----EIHGFLIRKG 580



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 192/426 (45%), Gaps = 72/426 (16%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
            AD + A+ LI           M  + ++FA +   +   +NT++   +Q  + + A+  
Sbjct: 280 FADVYVANALIAMYAKC---GRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNY 336

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           ++ M N+    D  +   L  AS    ++  GK +H + ++ G DS++ + NTLI+MYA 
Sbjct: 337 FRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAK 396

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK---------------- 222
           C  +      F+     DL+SW +I+AGY   +   EA  ++ K                
Sbjct: 397 CCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 223 ------MPERN----------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                 +  RN                I+  N+++ ++G  G+   A R F+ +  KD+V
Sbjct: 457 LRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIV 516

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++I+C   N +  EAL LF ++    +  D + ++S LSA ANL+ +K G  +H   
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           ++ G      + ++L+ MY+ CG +  + K+F +    DLI W SMI+     G   +A 
Sbjct: 577 IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAI 636

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
           ALF  M +++V+                               PD  T ++++ AC+H  
Sbjct: 637 ALFKKMTDENVI-------------------------------PDHITFLALLYACSHSG 665

Query: 441 ALDQGK 446
            + +GK
Sbjct: 666 LMVEGK 671



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 147/372 (39%), Gaps = 54/372 (14%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L  C  +  +  G  +HA  +K  +  +  L   L+HMY  CG +  A K+FD      
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSAF--LATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           + +WN+M+  ++  G                               ++ E + L+ EM+ 
Sbjct: 110 IFTWNAMMGAFVSSG-------------------------------KYLEAIELYKEMRV 138

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+  D  T  SV+ AC  L     G  IH    K G      +   LI MY K G +  
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGG 198

Query: 480 ALEVFHGT--EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           A  +F G   E++   SWN++I      G   ++L +F  M++ GV  N  TFV  L   
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYG------CMVDLLGRAGMLKEAEELIESMPM 591
                V  G       +  H     S H+        ++ +  + G +++AE +  SM +
Sbjct: 259 EDPSFVKLG-------MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM-L 310

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL-- 649
             D  +W  LL    ++  +       R +       D   VL  N+ A+ GR  ++L  
Sbjct: 311 CRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVL--NLIAASGRSGNLLNG 368

Query: 650 -EVRGMMVRRGV 660
            EV    +R G+
Sbjct: 369 KEVHAYAIRNGL 380


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/809 (31%), Positives = 421/809 (52%), Gaps = 76/809 (9%)

Query: 32  ILETHLQKCQSFKQFTQ---ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           +L + L  C   K F Q   I +Q+      ++TF  + LI      L F     + ++F
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIAL---YLGFGSFKLAERVF 202

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
             +   +   FNT++  + Q    + A+ ++  M  + +  D  T   L  A A    + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +GK +H ++LKAG   D     +L+++Y  CGD+  A  +F+     ++V WN +L  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 209 NADNVEEAKFIYNKMP---------------------------------------ERNII 229
              ++ ++  I+ +M                                        E ++ 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S  +I ++ + G + +A ++ + + K+D+VSW+++I+ Y Q++  EEAL  F  M D  
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D + + S  SACA +  ++ G  +HA                               
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHA------------------------------- 471

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +++ +G+  D+  WN++++ Y +CG  E+A +LF  +  KD ++W+ +ISG+ Q   + +
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQ 531

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L +FM+M   G + +  T +S ISA  +L  + QGK +H    K G    + +   LI 
Sbjct: 532 ALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           +Y K G +++A  +F     +   SWN +I   + +G   ++L++F +MK+ G+ PN++T
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+GVL AC H+GLV+EG  +F SM   + L P   HY C+VD+LGRAG L  A   ++ M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P++ +   W  LL ACK H + E+GE   + L+EL+P     +VLLSN +A  G+W +  
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           +VR MM  RG+ K PG S IE    +H F  GDR HP  ++I   L E+  +L   GY  
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQ 831

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           +   +  + +QE+K+ T F HSEKLA+AFGL+T+ P  P+R++KNLR+C+DCH+  K  S
Sbjct: 832 ENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTS 891

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               REIV+RD +RFHHF  GSCSC D+W
Sbjct: 892 EVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 221/489 (45%), Gaps = 72/489 (14%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH   +  G  +D  + N LI++YA  G +  AR++F E    D VSW ++L+GY  +  
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 213 VEEAKFIYNKM------PERNIIAS---------------------------------NS 233
            +EA  +Y++M      P   +++S                                 N+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L+   G+   A R+F +M   D V+++ LIS + Q    E AL +F  M    +  D
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V V S+L+ACA++  ++ G  +H+  +K G+      + +L+ +Y  CG+I TA  +F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
            G   +++ WN                                M+  Y Q    +++  +
Sbjct: 305 LGDRTNVVLWN-------------------------------LMLVAYGQISDLAKSFEI 333

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F +MQ  GI P++ T   ++  CT    ++ G+ IH+   KNG + +  +   LIDMY K
Sbjct: 334 FGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSK 393

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            GC+D A ++    E++ V SW ++I G+  +   +++L  F EM+  GV P+ I     
Sbjct: 394 YGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASA 453

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
             AC  +  + +G    ++ +       +   +  +V+L  R G  +EA  L   +    
Sbjct: 454 ASACAGIKAMRQG-LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKD 512

Query: 594 DVATWGALL 602
           ++ TW  L+
Sbjct: 513 EI-TWNGLI 520



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 39/359 (10%)

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G   D +  N +I  Y K G V +AR +F  +  +D VSW  M+SGYAQ     E   L+
Sbjct: 73  GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLY 132

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M    + P    L SV+SACT      QG+ IHA + K      + +G  LI +Y+  
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G    A  VF         ++N LI G A  G  + +L++F EM+ SG+ P+ +T   +L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL--------- 585
            AC  +G + +G +  +S + +  +  +    G ++DL  + G ++ A ++         
Sbjct: 253 AACASVGDLQKG-KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 586 -------------------------IESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
                                    +++  + P+  T+  +L  C   G  E+GE++   
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 621 LVELQPDHDGF-HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++   + D +   +L ++++  G  D   ++  M+ +R VV     SMI A  + H+F
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT--SMI-AGYVQHDF 427



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 100/258 (38%), Gaps = 44/258 (17%)

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-----IHAYIRKNGLKI 459
           D   + LSL      H      A L   + AC         +W     IHA     GL  
Sbjct: 21  DNPEKILSLVAAKASHHRALGSADLTCALQACRG----RGNRWPLVLEIHATSVVRGLGA 76

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           + ++G  LID+Y K G V  A +VF     +   SW A++ G+A +GL  ++  ++S+M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMH 136

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            + V P       VL AC    L  +G R  ++ + +      +     ++ L    G  
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHAQVYKQAFCSETFVGNALIALYLGFGSF 195

Query: 580 KEAE-------------------------------ELIESMPMS---PDVATWGALLGAC 605
           K AE                               ++ + M +S   PD  T  +LL AC
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 606 KKHGDHEMGERVGRKLVE 623
              GD + G+++   L++
Sbjct: 256 ASVGDLQKGKQLHSYLLK 273


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/721 (34%), Positives = 400/721 (55%), Gaps = 63/721 (8%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           ++  TY  + Q  A   S  +GK +H  +       D  +   L++ YA CGDL   R++
Sbjct: 97  LETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE-A 247
           FD     ++  WN +++ Y    + +E+  ++  M E+ I            +G   E A
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESA 204

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             LF ++  +D++SW+++IS Y  N + E  L ++  M+   + VD   ++SVL  CAN 
Sbjct: 205 FELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANS 264

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G +VH+LA+K   E  IN  N L+ MYS CG++  A ++F+     +++SW SMI
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 368 SGYLKCGSVEKARALFDAM----IEKDVVSWSTMI-----SG------------------ 400
           +GY + G  + A  L   M    ++ DVV+ ++++     SG                  
Sbjct: 325 AGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME 384

Query: 401 ------------YAQHDQFSETLSLFMEMQHHGI----------RPDEATLVSVISACTH 438
                       YA+        S+F  M    I          +PD  T+  V+ AC  
Sbjct: 385 SNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACAS 444

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL++GK IH YI +NG   +  +   L+D+Y+K G +  A  +F     K + SW  +
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVM 504

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+ M+G  ++++  F+EM+ +G+ P+E++F+ +L AC H GL+++G R F  M  +  
Sbjct: 505 IAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP  +HY CMVDLL R G L +A E IE++P++PD   WGALL  C+ + D E+ E+V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++ EL+P++ G++VLL+NI+A   +W++V  +R  + ++G+ K PGCS IE  G ++ F
Sbjct: 625 ERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLF 684

Query: 679 LAGDR-THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           ++G+  +HP    I+++L +M +K+K EG+ P T     + D+ +KE  L  HSEKLA+A
Sbjct: 685 VSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+T+ P   IR+ KNLR+C DCH  AKF+S+   REIV+RD +RFHHFK G CSC  F
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGF 804

Query: 798 W 798
           W
Sbjct: 805 W 805



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 232/528 (43%), Gaps = 86/528 (16%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   K FT   ++ S +    +  D     +L+ F        E     ++F  +E 
Sbjct: 106 LQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKE---GRRVFDTMEK 162

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N +++N M+  Y +    +++ICL+K+M+   +                  S FE   +
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESAFE---L 207

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL----DLVSWNSILAGYVN 209
            D +     D DV   N++I+ Y   G       ++ +   L    DL +  S+L G  N
Sbjct: 208 FDKLC----DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 210 ADNVEEAKFIYN----KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           +  +   K +++       ER I  SN+++ ++ + G++  A R+F++M ++++VSW+++
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+ Y ++   + A+ L   M    V +D V + S+L ACA    +  G  VH       +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG---------------- 369
           E  + + NAL+ MY+ CG +  A  +F      D+ISWN+MI                  
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 370 ---------------------------------YLKCGSVEKARALFDAMIEKDVVSWST 396
                                            Y+KCG +  AR LFD +  KD+VSW+ 
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI+GY  H   +E ++ F EM+  GI PDE + +S++ AC+H   L+QG W   YI KN 
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKND 562

Query: 457 LKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
             I   L     ++D+  + G +  A E           + W AL+ G
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 29/387 (7%)

Query: 67  RLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           R I FS  LL       ++  + ++F  +   N   + +M+  Y +      AI L + M
Sbjct: 284 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQM 343

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
               V +D      +  A A   S+  GK +HD++     +S+++V N L++MYA CG +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSM 403

Query: 183 SAARKLFDESPVLDLVSWNS--------------ILAGYVNADNVEEAKFIYNKMPERNI 228
            AA  +F    V D++SWN+              +L    +   +E  K I+  +  RN 
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL-RNG 462

Query: 229 IAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            +S     N+++ L+ + G +  A  LF  +P KDLVSW+ +I+ Y  +    EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSC 342
            M D  +  DEV  +S+L AC++  +++ G    + +     IE  +     ++ + S  
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 343 GEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMI 398
           G ++ A +  +      D   W +++ G      +E A  + + + E   ++   +  + 
Sbjct: 583 GNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLA 642

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPD 425
           + YA+ +++ E   L  ++   G+R +
Sbjct: 643 NIYAEAEKWEEVKRLREKIGKQGLRKN 669


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 283/878 (32%), Positives = 458/878 (52%), Gaps = 125/878 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLI-KFSTDLLPFIEMSYSFKIFAFLE-SP 94
           L    +  +  +I + +I  GL +  F + +LI K+S     F E + S  +F  +  + 
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSH----FREPASSLSVFRRVSPAK 69

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N +++N+++RA+ +  +  +A+  Y  +  + V  D YT+P + +A A       G L++
Sbjct: 70  NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
           + +L  GF+SD++V N L++MY+  G L+ AR++FDE PV DLVSWNS+++GY +    E
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189

Query: 215 EAKFIYNKMPERNIIAS----NSMIVLFG-----RKGN---------------------- 243
           EA  IY+++    I+      +S++  FG     ++G                       
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249

Query: 244 --------VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
                     +A R+F EM  +D VS++ +I  Y + EM EE++ +F+  +D +   D +
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLL 308

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            V SVL AC +L  +     ++   +K G      ++N LI +Y+ CG++ TA  +F++ 
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMIS------------ 399
              D +SWNS+ISGY++ G + +A  LF  M+    + D +++  +IS            
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428

Query: 400 -----------------------GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
                                   YA+  +  ++L +F  M       D  T  +VISAC
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTG----DTVTWNTVISAC 484

Query: 437 --------------------------THLVALDQ---------GKWIHAYIRKNGLKINS 461
                                     T LV L           GK IH  + + G +   
Sbjct: 485 VRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESEL 544

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +G  LI+MY K GC++N+  VF     + V +W  +I  + M G  +K+LE F++M+KS
Sbjct: 545 QIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKS 604

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ P+ + F+ ++ AC H GLVDEG   F  M   ++++P  +HY C+VDLL R+  + +
Sbjct: 605 GIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISK 664

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           AEE I++MP+ PD + W ++L AC+  GD E  ERV R+++EL PD  G+ +L SN +A+
Sbjct: 665 AEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAA 724

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
             +WD V  +R  +  + + K PG S IE    +H F +GD + PQ   I   L+ +   
Sbjct: 725 LRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSL 784

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           +  EGY PD  EV+ ++++EE++  L   HSE+LAIAFGL+   P  P+++MKNLR+C D
Sbjct: 785 MAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGD 844

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CH   K IS+   REI+VRD +RFH FK G+CSC D W
Sbjct: 845 CHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 343/573 (59%), Gaps = 31/573 (5%)

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           RN+  +N ++ ++  +G + +A  LF  M K+   SWS ++  Y +   +     +F  +
Sbjct: 83  RNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL 142

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +     +D+     V+ AC +L  +K G  +H + +K G+                    
Sbjct: 143 LRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGL-------------------- 182

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                  D GH        +++  Y +C  VE A  +F  M ++D+ +W+ MI   A+  
Sbjct: 183 -------DYGH----FVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESG 231

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E+L  F  M++ GI PD+  LV+V+ AC  L A+++ K IHAYI   G  ++ ILGT
Sbjct: 232 VPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGT 291

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            +IDMY K G V++A  +F   + + V +W+A+I  +  +G  +K+LE+F  M +SG+ P
Sbjct: 292 AMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILP 351

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N ITFV +L AC H GL++EG R F+SM  E+ + P+ KHY CMVDLLGRAG L EA E+
Sbjct: 352 NRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEM 411

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           IE MP+  D   WGALLGAC+ H   ++ ERV R L++LQ    G +VLLSNI+A+ G+W
Sbjct: 412 IEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKW 471

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           +D+ + R +M + G+ KIPG + IE    +++F  GD+THP+ NEI  ML  + +KL++ 
Sbjct: 472 EDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVA 531

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT +V +D+D+E K+  L+ HSEKLAIAFGL+ +   +PIRI KNLR+C DCHT  
Sbjct: 532 GYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFC 591

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KF+S    + I+VRD  RFHHFK G CSC D+W
Sbjct: 592 KFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/490 (19%), Positives = 200/490 (40%), Gaps = 92/490 (18%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
             + L  C++  Q  Q+ +Q+   G   +   A++L+    +     +     ++F  + 
Sbjct: 56  FRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQ---ELFDGMS 112

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
             + + ++ ++  Y +         +++ +L +   +D+Y+ P++ +A      +  G+L
Sbjct: 113 KRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRL 172

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH   LK G D   +V  TL++MYA C  +  A ++F +    DL +W  ++     +  
Sbjct: 173 IHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGV 232

Query: 213 VEEAKFIYNKM------PER---------------------------------NIIASNS 233
             E+   +++M      P++                                 ++I   +
Sbjct: 233 PVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTA 292

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           MI ++ + G+V  A  +F  M  +++++WSA+I+ Y  +   E+AL LF  M+   ++ +
Sbjct: 293 MIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPN 352

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            +  VS+L AC++  +++ G                  Q     M+             +
Sbjct: 353 RITFVSLLYACSHAGLIEEG------------------QRFFSSMWD------------E 382

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQH---DQFSE 409
            G   D+  +  M+    + G +++A  + + M +EKD V W  ++     H   D    
Sbjct: 383 YGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAER 442

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW-----IHAYIRKNGLKINSILG 464
                +++Q    +P    L+S I A       + GKW         + K GL+   I G
Sbjct: 443 VARSLLKLQSQ--KPGHYVLLSNIYA-------NAGKWEDMAKTRDLMTKGGLR--KIPG 491

Query: 465 TTLIDMYMKL 474
            T I++  KL
Sbjct: 492 RTWIEVGEKL 501



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 96/192 (50%), Gaps = 9/192 (4%)

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
           H +  D     S + +C +L  + Q   +HA I  NG   N  +   L+ MY++ G +++
Sbjct: 47  HVLHYDTKRFRSSLLSCRNLFQVRQ---VHAQIATNGAFRNLAVANKLLYMYVERGALED 103

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A E+F G  ++   SW+ ++ G+A  G       MF E+ +SG   ++ +   V+ ACR 
Sbjct: 104 AQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRD 163

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGC--MVDLLGRAGMLKEAEELIESMPMSPDVAT 597
           +  +  G R  + +  +  L+    H+ C  +VD+  R  ++++A ++   M    D+AT
Sbjct: 164 LKDLKCG-RLIHCITLKCGLDYG--HFVCATLVDMYARCKVVEDAHQIFVKM-WKRDLAT 219

Query: 598 WGALLGACKKHG 609
           W  ++GA  + G
Sbjct: 220 WTVMIGALAESG 231


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/758 (34%), Positives = 396/758 (52%), Gaps = 73/758 (9%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F ++  ++ +F  +   + F +N ++  Y +     +A+CLY  +L   +  D YT+P +
Sbjct: 82  FGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSV 141

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            ++ A  + +  G+ +H HV++  FD DV V N LI MY  CGD+ +AR LFD+ P  D 
Sbjct: 142 LRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDR 201

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPE-------------------------------- 225
           +SWN++++GY   D   E   ++ +M E                                
Sbjct: 202 ISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSY 261

Query: 226 -------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                   NI   NS+I ++   G+  EA  +F  M  +D+VSW+ +IS    N + ++A
Sbjct: 262 VVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKA 321

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L  +  M     M DEV + SVLSACA+L  +  G  +H LA + G   Y+ + N+LI M
Sbjct: 322 LETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDM 381

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           YS C  I  A ++F    + D+ISW S+I+G        +A   F  MI K         
Sbjct: 382 YSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-------- 433

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
                                   +P+  TL+S +SAC  + AL  GK IHA+  K G+ 
Sbjct: 434 ------------------------KPNSVTLISALSACARVGALMCGKEIHAHALKAGMG 469

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  L   ++D+Y++ G +  AL  F+   EK V +WN L+ G+A  G     +E+F  M
Sbjct: 470 FDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRM 528

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +S + P+++TF+ +L AC   G+V EG  +F  M   + + PN KHY C+VDLLGRAG 
Sbjct: 529 VESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGK 588

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L EA E IE MP+ PD A WGALL AC+ H    +GE   + + +   +  G+++LL N+
Sbjct: 589 LNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNL 648

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A  G+WD+V +VR  M   G++  PGCS +E  G +H FL+GD  HPQ+ EI+ +L+  
Sbjct: 649 YADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGF 708

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            +K+K  G+       + D  Q  K      HSE+ AIA+ LI  +P  PI + KNL +C
Sbjct: 709 YEKMKTSGFNGQECS-SMDGIQTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMC 767

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             CH+  KFIS+   REI VRD  +FHHFK G CSC D
Sbjct: 768 QSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/515 (27%), Positives = 227/515 (44%), Gaps = 84/515 (16%)

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-- 223
           V + N L++M+   GD+  A  +F      DL SWN ++ GY  A   +EA  +Y+++  
Sbjct: 69  VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 224 ----PERNIIAS---------------------------------NSMIVLFGRKGNVAE 246
               P+     S                                 N++I ++ + G+V  
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  LF +MP +D +SW+A+IS Y +N+   E L LF  M +  +  D + + SV+SAC  
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L   + GT +H+  V+   +  I++ N+LI MY S G    AE +F      D++SW ++
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           ISG +     +KA                               L  +  M+  G  PDE
Sbjct: 309 ISGCVDNLLPDKA-------------------------------LETYKTMEITGTMPDE 337

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+ SV+SAC  L  LD G  +H    + G  +  ++  +LIDMY K   ++ ALE+FH 
Sbjct: 338 VTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQ 397

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             +K V SW ++I G  +N    ++L  F +M      PN +T +  L AC  +G +  G
Sbjct: 398 IPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCG 456

Query: 547 HRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
                  I  H L+      G     ++DL  R G ++ A  L +      DV  W  LL
Sbjct: 457 KE-----IHAHALKAGMGFDGFLPNAILDLYVRCGRMRTA--LNQFNLNEKDVGAWNILL 509

Query: 603 GACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLL 635
               + G   M   + +++V  E+ PD   F  LL
Sbjct: 510 TGYAQKGKGAMVMELFKRMVESEINPDDVTFISLL 544



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 144/331 (43%), Gaps = 34/331 (10%)

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNA 334
           E+AL    +M + ++ V+E   V+++  C N      G  V  A+   +     + L NA
Sbjct: 15  EQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNA 74

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ M+   G++  A  +F      DL SWN ++ GY K G                    
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGF------------------- 115

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
                       F E L L+  +   GIRPD  T  SV+ +C   + L +G+ +HA++ +
Sbjct: 116 ------------FDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR 163

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
               ++  +   LI MY+K G V +A  +F     +   SWNA+I G+  N    + LE+
Sbjct: 164 FDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLEL 223

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M++  + P+ +T   V+ AC  +G    G    +S +     + N   Y  ++ +  
Sbjct: 224 FFRMRELSIDPDLMTMTSVISACELLGDERLG-TQLHSYVVRTAYDGNISVYNSLIQMYL 282

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGAC 605
             G  KEAE +   M    DV +W  ++  C
Sbjct: 283 SVGHWKEAESVFSGMECR-DVVSWTTIISGC 312


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/483 (47%), Positives = 312/483 (64%), Gaps = 7/483 (1%)

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMISGYLKCGSVEKA 379
           K G   +  + N L+ +Y + G +  A ++FD      LD++SWN+M+SGY KCG +E A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R +F  M E+ +VSWS MI    +  +FSE L +F +M  +G +PD   LVSV+  C HL
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHL 228

Query: 440 VALDQGKWIHAYI---RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            AL++G+W+H ++   R  G   N +L T L+DMY K GC++ A  VF G +   V  WN
Sbjct: 229 GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWN 288

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I G AMNG   ++LE+F  M   G  PNE TFV  L AC H G VDEG   F SM ++
Sbjct: 289 AMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSM-RD 347

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           H +EP  +HYGC+ DLLGRAG+L+EAE ++  MPM P  + WGAL+ +C  H +  +GER
Sbjct: 348 HGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGER 407

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
           VG+KL+EL+PD  G +V L N++A  G W+D   +R MM  RG  K  G S IE NG++H
Sbjct: 408 VGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVH 467

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLA 735
           EF +GD  HPQ   I  +L++M ++L+L GY  DT +V  D+D EE K  TL  HSE+LA
Sbjct: 468 EFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLA 527

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AFG++ I    PIRI+KNLR+C DCH  AK +S+ + REI+VRDRHRFH F+ G CSC 
Sbjct: 528 LAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCN 587

Query: 796 DFW 798
           DFW
Sbjct: 588 DFW 590



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 154/347 (44%), Gaps = 68/347 (19%)

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES--PVLDLVSWNSILAGYVNADNVEEA 216
           K G  +   V N L+ +Y   G L  AR++FD S    LD+VSWN++++GY         
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGY--------- 159

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                                 G+ G++  A  +F  MP++ LVSWSA+I    +   + 
Sbjct: 160 ----------------------GKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFS 197

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL--AVKIGIE-CYINLQN 333
           EAL +F  M  +    D VV+VSVL  CA+L  ++ G  VH    A ++G     + L+ 
Sbjct: 198 EALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLET 257

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MY  CG +  A  +FD   + D++ WN+MI G    G  ++A  LF  M++K    
Sbjct: 258 ALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDK---- 313

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                      G  P+E+T V  + AC H   +D+G+ +   +R
Sbjct: 314 ---------------------------GFVPNESTFVVALCACIHTGRVDEGEDVFRSMR 346

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            +G++        L D+  + G ++ A  V      E   S W AL+
Sbjct: 347 DHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALM 393



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 46/307 (14%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM- 223
           DV   NT+++ Y  CGDL AAR++F   P   LVSW++++   V      EA  ++++M 
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207

Query: 224 -----------------------------------PER------NIIASNSMIVLFGRKG 242
                                               ER      N++   +++ ++ + G
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            + EA  +F  +   D+V W+A+I     N   + AL LF  M+D   + +E   V  L 
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALC 327

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLI 361
           AC +   V  G  V       GIE        L  +    G +  AE  L D        
Sbjct: 328 ACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHAS 387

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            W +++S  L   +V     +   +IE    D   +  + + YA +  + +  +L   M+
Sbjct: 388 QWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMME 447

Query: 419 HHGIRPD 425
             G + +
Sbjct: 448 ERGAKKE 454



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 17/220 (7%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + ++F  +       ++ M+ A ++     +A+ ++  M  N    D      + +
Sbjct: 164 DLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLK 223

Query: 140 ASALRLSVFEGKLIHDHVLKA----GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
             A   ++  G+ +H   LKA    G   +V +   L++MY  CG ++ A  +FD     
Sbjct: 224 TCAHLGALERGRWVH-RFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH 282

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL----FGRKGNVAEACRLF 251
           D+V WN+++ G     + + A  ++ +M ++  + + S  V+        G V E   +F
Sbjct: 283 DVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVF 342

Query: 252 KEM------PKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           + M      P+++   +  L     +  + EEA  + ++M
Sbjct: 343 RSMRDHGIEPRRE--HYGCLADLLGRAGLLEEAEGVLLDM 380


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 276/854 (32%), Positives = 446/854 (52%), Gaps = 119/854 (13%)

Query: 57   GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
            GL  D F  + L+   + +    ++  + ++F  +   +   +N M+    Q   P +A+
Sbjct: 159  GLERDVFIGAGLVDMYSKM---GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 117  CLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFE-GKLIHDHVLKAGFDSDVYVNNTLIN 174
              ++ M    VGV+  +  LL     + +LS  E  + IH +V +  F S V  +N LI+
Sbjct: 216  DFFRSM--QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLID 271

Query: 175  MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------- 224
            +Y+ CGD+  AR++FD+    D VSW +++AGY +     E   +++KM           
Sbjct: 272  LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 225  -----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                         + +I+ +  ++V++ + G   +A +LF  + 
Sbjct: 332  AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 256  KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
             +DLV+WSA+I+   Q    EEAL LF  M + ++  + V ++S+L ACA+L+++K G S
Sbjct: 392  GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 316  VHALAVKIGIECYINL-------------------------------QNALIHMYSSCGE 344
            +H   VK  ++  ++                                 N+LI+ Y+  G+
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 345  ITTAEKLF----------DAG---------------------HNL--------DLISWNS 365
               A  +F          DAG                     H L        D    N+
Sbjct: 512  PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 366  MISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            +I  Y KCGS+  A  LF+     KD V+W+ +I+ Y Q+    E +S F +M+     P
Sbjct: 572  LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631

Query: 425  DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
            +  T VSV+ A  +L A  +G   HA I + G   N+++G +LIDMY K G +  + ++F
Sbjct: 632  NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLF 691

Query: 485  HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
            +  + K   SWNA++ G+A++G  D+++ +FS M++S V  + ++FV VL ACRH GLV+
Sbjct: 692  NEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVE 751

Query: 545  EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            EG + F+SM  ++ ++P+ +HY CMVDLLGRAG+  E    I+ MP+ PD   WGALLG+
Sbjct: 752  EGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGS 811

Query: 605  CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
            C+ H + ++GE     LV+L+P +    V+LS+I+A  GRW D  + R  M   G+ K P
Sbjct: 812  CRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTP 871

Query: 665  GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
            GCS +E    +H F  GD++HPQ+  +  + + + +K++  GY PD   V  ++++E+KE
Sbjct: 872  GCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKE 931

Query: 725  TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
              L+ HSE+LAI F L+   P + I+I+KNLR+C DCHT  KFIS+   R I+VRD  RF
Sbjct: 932  MFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRF 991

Query: 785  HHFKHGSCSCMDFW 798
            HHF+ G CSC D+W
Sbjct: 992  HHFEDGICSCNDYW 1005



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/610 (26%), Positives = 289/610 (47%), Gaps = 73/610 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C+      QI +Q+I++G      + + LI   +    F +   +  +F    +P+ 
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYS---LFHKCDLARSVFDSTPNPSR 94

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            ++N+M+RAY +     +A+ +Y  M+   +  D YT+  + +A    L++ EG   H  
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD----- 211
           + + G + DV++   L++MY+  GDL  AR++FD+ P  D+V+WN+++AG   ++     
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 212 ------------------------------NVEEAKFIYNKMPERNIIA--SNSMIVLFG 239
                                         N+E  + I+  +  R+  +  SN +I L+ 
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYS 274

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G+V  A R+F +M  +D VSW  +++ Y  N  + E L LF  M    V +++V  VS
Sbjct: 275 KCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVS 334

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
              A A    ++ G  +H  A++  I+  I +   L+ MY+ CGE   A++LF      D
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L++W+++I+  ++ G  E                               E LSLF EMQ+
Sbjct: 395 LVAWSAIIAALVQTGYPE-------------------------------EALSLFQEMQN 423

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             ++P+  TL+S++ AC  L  L  GK IH +  K  +  +   GT L+ MY K G    
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           AL  F+    + + +WN+LI G+A  G    +++MF +++ S + P+  T VGV+ AC  
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +  +D+G    + +I +   E +      ++D+  + G L  AE L      + D  TW 
Sbjct: 544 LNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602

Query: 600 ALLGACKKHG 609
            ++ A  ++G
Sbjct: 603 VIIAAYMQNG 612



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 35/363 (9%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F   P    + W+++I  Y +++ Y EAL ++  M++  +  D+     VL AC     
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G   H    + G+E  + +   L+ MYS                             
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYS----------------------------- 175

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
             K G +++AR +FD M ++DVV+W+ MI+G +Q +   E +  F  MQ  G+ P   +L
Sbjct: 176 --KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +++      L  ++  + IH Y+ +     +S +   LID+Y K G VD A  VF    +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SW  ++ G+A NG   + LE+F +MK   V  N+++ V    A      +++G   
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +Q+ R++ +      ++ +  + G  ++A++L   +    D+  W A++ A  + G
Sbjct: 352 HGCALQQ-RIDSDILVATPLMVMYAKCGETEKAKQLFWGL-QGRDLVAWSAIIAALVQTG 409

Query: 610 DHE 612
             E
Sbjct: 410 YPE 412



 Score = 40.0 bits (92), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 20/224 (8%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F++     + +I  G +++T   + LI          ++ YS K+F  ++  +   +N 
Sbjct: 648 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC---GQLXYSEKLFNEMDHKDTVSWNA 704

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+  Y       +AI L+ LM  + V +D+ ++  +  A      V EG+ I   +    
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSM---- 760

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDES-------PV-LDLVSWNSILAGYVNADNV 213
             SD Y     +  YA   DL     LFDE+       PV  D   W ++L       NV
Sbjct: 761 --SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNV 818

Query: 214 EEAKFIYN---KMPERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
           +  +   +   K+  RN      +  ++ + G  A+A +   +M
Sbjct: 819 KLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKM 862


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/746 (34%), Positives = 404/746 (54%), Gaps = 76/746 (10%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-- 152
           N   F T+++ Y+Q     + + L+  +      ++ + +  + +   L +SV   +L  
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILK---LLVSVECAELAY 61

Query: 153 -IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H  + K G +S+ +V   LI+ YAVCG +++AR+ FD     D+VSW  ++A Y   D
Sbjct: 62  SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 212 NVEEAKFIYNKMP---------------------------------------ERNIIASN 232
             +++  ++ +M                                        E ++    
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
            ++ L+ + G+  +  R+F+EMPK D++ WS +IS Y Q+    EA+ LF  M    V+ 
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           ++    SVL +CA++  ++ G  VH   +K+G++  + + NAL+ +Y+            
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYA------------ 289

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                              KCG ++ +  LF  +  ++ V+W+TMI GY Q     + LS
Sbjct: 290 -------------------KCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           L+  M    ++  E T  SV+ AC  L A++ G  IH+   K     + ++G  LIDMY 
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYA 390

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G + NA  VF    E+   SWNA+I G++M+GL  ++L+ F  M+++   PN++TFV 
Sbjct: 391 KCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVS 450

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC + GL+D G  +F SM+Q++ +EP  +HY CMV LLGR+G L +A +LIE +P+ 
Sbjct: 451 ILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLE 510

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P+V  W ALLGAC  H D ++G    ++++++ P  +  HVLLSNI+A   RW+ V  VR
Sbjct: 511 PNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVR 570

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
             M  +GV K PG S IE  GI+H F  GD +HP +  I  ML+ +  K +  GY PD  
Sbjct: 571 KFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLN 630

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            V  D++ +EK+  L+ HSE+LA+AFGLI       IRI+KNLRIC DCH+A K IS+  
Sbjct: 631 AVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIV 690

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            R+I++RD +RFHHF+ G CSC D+W
Sbjct: 691 QRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 176/372 (47%), Gaps = 33/372 (8%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MP ++ VS+  LI  Y Q+   +E + LF  +      ++  V  ++L    ++   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            S+HA   K+G E    +  ALI  Y+ CG + +A + FDA    D++SW          
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSW---------- 110

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                                + M++ YA++D+F ++L LF EM+  G  P+  T   V+
Sbjct: 111 ---------------------TGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVL 149

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC  L A   GK +H  + K   +++  +G  L+D+Y K G  ++ L VF    +  V 
Sbjct: 150 KACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVI 209

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            W+ +I  +A +  + +++E+F +M+++ V PN+ TF  VL +C  +  +  G +  +  
Sbjct: 210 PWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLG-KQVHCH 268

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           + +  L+ N      ++D+  + G L  + +L   +P   +V TW  ++    + GD + 
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEV-TWNTMIVGYVQSGDGDK 327

Query: 614 GERVGRKLVELQ 625
              + + ++E Q
Sbjct: 328 ALSLYKNMLECQ 339



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 151/309 (48%), Gaps = 40/309 (12%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            ++F  +   +   ++ M+  Y Q N  ++A+ L+  M    V  + +T+  + Q+ A  
Sbjct: 197 LRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASI 256

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            ++  GK +H HVLK G D +V+V+N L+++YA CG L  + KLF E P  + V+WN+++
Sbjct: 257 ENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMI 316

Query: 205 AGYVNADNVEEAKFIYNKMPE--------------------------------------- 225
            GYV + + ++A  +Y  M E                                       
Sbjct: 317 VGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD 376

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           ++++  N++I ++ + G++  A  +F  + ++D +SW+A+IS Y  + +  EAL  F  M
Sbjct: 377 KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMM 436

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGE 344
            +   + +++  VS+LSAC+N  ++  G +     V+  GIE  +     ++ +    G 
Sbjct: 437 QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGH 496

Query: 345 ITTAEKLFD 353
           +  A KL +
Sbjct: 497 LDKAVKLIE 505



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 34/300 (11%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +++ VS+ T+I GY Q  Q  E + LF  +   G   +     +++     +   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
             +HA I K G + N+ +GT LID Y   G V++A + F     K + SW  ++  +A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM------------------------- 540
                SL++F+EM+  G  PN  TF GVL AC  +                         
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 541 -GLVDEGHRHFNSMIQEHRLEPNSKH----YGCMVDLLGRAGMLKEAEELIESMPMS--- 592
            GL+D   +  ++       E   KH    +  M+    ++   +EA EL   M  +   
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-HVLLSNIHASKGRWDDVLEV 651
           P+  T+ ++L +C    + ++G++V   ++++  D + F    L +++A  GR D+ +++
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 48/283 (16%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C S +      Q+   ++  GL  + F ++ L+           +  S K+F  L +
Sbjct: 250 LQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCG---RLDNSMKLFMELPN 306

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +NTM+  Y+Q     +A+ LYK ML   V     TY  + +A A   ++  G  I
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H   LK  +D DV V N LI+MYA CG +  AR +FD     D +SWN++++GY     V
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLV 426

Query: 214 EEAKFIYNKMPERNII------------ASNS---------------------------- 233
            EA   +  M E   +             SN+                            
Sbjct: 427 GEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTC 486

Query: 234 MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SCYEQNEM 274
           M+ L GR G++ +A +L +E+P + ++  W AL+ +C   N++
Sbjct: 487 MVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDV 529


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/701 (34%), Positives = 385/701 (54%), Gaps = 52/701 (7%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G  +H  ++  G D   ++ + L+ +Y   G +  AR++FD+    ++ SW +I+  Y  
Sbjct: 29  GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 88

Query: 210 ADNVEE-----------------------------------AKFIYNKMP----ERNIIA 230
             + EE                                    K +Y+ M     E N   
Sbjct: 89  LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV 148

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
             S++ +F + G +  A R F+E+  KD+  W+ ++S Y     +++AL +F  M+   V
Sbjct: 149 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGV 208

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAE 349
             + + + S +SAC NL++++ G  +H   +K+  ++  + + N+L+  Y+ C  +  A 
Sbjct: 209 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 268

Query: 350 KLFDAGHNLDLISWNSM--ISGYLKCGSVEKARALFDAM----------IEKDVVSWSTM 397
           + F      DL+SWN+M  ++G+ + G  + A   F  M            +DVV W+++
Sbjct: 269 RKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSI 328

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           IS  AQ  +    L L  EM    +  +  T+VS + AC+ L AL QGK IH +I + GL
Sbjct: 329 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 388

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
              + +  +LIDMY + G +  +  +F    ++ + SWN +I  + M+G    ++ +F +
Sbjct: 389 DTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ 448

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
            +  G+ PN ITF  +L AC H GL++EG ++F  M  E+ ++P  + Y CMVDLL RAG
Sbjct: 449 FRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAG 508

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
              E  E IE MP  P+ A WG+LLGAC+ H + ++ E   R L EL+P   G +VL++N
Sbjct: 509 QFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 568

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+++ GRW+D  ++R +M  RGV K PGCS IE    +H F+ GD +HP + +I   ++ 
Sbjct: 569 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMES 628

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +   +K  GY PDT  V  D+D++EKE +L  HSEK+A+AFGLI+ +   P+RI+KNLR+
Sbjct: 629 LYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRV 688

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH+A KFIS+   R+I++RD +RFHHF  G CSC D+W
Sbjct: 689 CGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 4/201 (1%)

Query: 424 PDEATLV--SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           PDE   +  S++  C  L  L  G  +HA +  NG+ +   LG+ L+++Y + GCV++A 
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F    E+ V SW A++  +   G  ++++++F  M   GV P+   F  V  AC  + 
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
               G   ++ M+     E NS   G ++D+  + G +  A    E +    DV  W  +
Sbjct: 126 NYRVGKDVYDYMLSIG-FEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIM 183

Query: 602 LGACKKHGDHEMGERVGRKLV 622
           +      G+ +    V RK+V
Sbjct: 184 VSGYTSKGEFKKALNVFRKMV 204



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 8/134 (5%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT---- 133
           F  M  +  +F+ L + +  ++N+++ A  Q      A+ L + M  +NV V+  T    
Sbjct: 304 FQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSA 363

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
            P  ++ +ALR    +GK IH  +++ G D+  ++ N+LI+MY  CG +  +R++FD  P
Sbjct: 364 LPACSKLAALR----QGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 419

Query: 194 VLDLVSWNSILAGY 207
             DLVSWN +++ Y
Sbjct: 420 QRDLVSWNVMISVY 433


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/714 (34%), Positives = 397/714 (55%), Gaps = 63/714 (8%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV-GVDNYTYPLLAQASALR 144
           +IF+ + + +G  +N+++  Y+      +A+  Y  M+ + V  ++  T+  +    + +
Sbjct: 92  EIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQ 151

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             V  G+ IH  ++K GF + V+V ++L++MYA  G +S A ++FDE             
Sbjct: 152 GCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE------------- 198

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                             + ERN++  N+MI    R G V ++ RLF  M ++D +SW+ 
Sbjct: 199 ------------------VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTT 240

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+   QN +  EA+ LF +M    + +D+    SVL+AC  L  +K G  +H L ++  
Sbjct: 241 MITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR-- 298

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
                                        +G+N ++   ++++  Y KC SV  A A+F 
Sbjct: 299 -----------------------------SGYNHNVFVGSALVDMYCKCRSVRYAEAVFK 329

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  K+VVSW+ M+ GY Q+    E + +F +MQ +GI PD+ TL SVIS+C +L +L++
Sbjct: 330 RMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEE 389

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H     +GL     +   LI +Y K G ++++ ++F     +   SW AL+ G+A 
Sbjct: 390 GAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQ 449

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A++++++F  M   G+ P+ +TF+ VL AC   GLV+ G ++F SM+++H + P S 
Sbjct: 450 FGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSD 509

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DL GRAG L+EA+  I  MP SPD   W  LL +C+ +G+ E+G+     L+EL
Sbjct: 510 HYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLEL 569

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P +   ++LLS+I+A+KG+W +V ++R  M  +G  K PG S I+    ++ F A D++
Sbjct: 570 DPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQS 629

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
            P  ++I   L+++  K+  EGY PD   V  D++  EK   L  HSEKLAIAFGL+ I 
Sbjct: 630 SPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIP 689

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PIR++KNLR+C DCH A K+IS+   REI+VRD  RFH FK G+CSC DFW
Sbjct: 690 HGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 279/530 (52%), Gaps = 50/530 (9%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           + K +H  ++K+  + + ++ N LIN Y+  G+++ AR +FD+ P  +  SWN++L+ Y 
Sbjct: 23  QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYS 82

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
            + ++   + I++ MP R+ ++ NS+I  +   G+V EA + +  M K            
Sbjct: 83  KSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG---------- 132

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
                      VL +N I    M+  ++V S    C +L     G  +H   VK G   Y
Sbjct: 133 -----------VLNLNRITFSTML--LLVSS--QGCVDL-----GRQIHGQIVKFGFGAY 172

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + + ++L+ MY+  G ++ A ++FD     +++ +N+MI+G L+ G V+ ++ LF  M E
Sbjct: 173 VFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKE 232

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           +D +SW+TMI+G  Q+   +E + LF +M+  G+  D+ T  SV++AC  L AL +GK I
Sbjct: 233 RDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEI 292

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           H  I ++G   N  +G+ L+DMY K   V  A  VF     K V SW A+++G+  NG +
Sbjct: 293 HTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFS 352

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYG 567
           ++++ +F +M+++G+ P++ T   V+ +C ++  ++EG + H  +++    L        
Sbjct: 353 EEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG--LISFITVSN 410

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD-HEMGERVGRKLVE-LQ 625
            ++ L G+ G ++++ +L + M    +V +W AL+    + G  +E  +   R LV+ L+
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEV-SWTALVSGYAQFGKANETIDLFERMLVQGLK 469

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
           PD   F  +LS               R  +V RG       SM++ +GII
Sbjct: 470 PDAVTFIAVLSACS------------RAGLVERGQQYFE--SMLKDHGII 505


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/801 (33%), Positives = 415/801 (51%), Gaps = 75/801 (9%)

Query: 39  KCQSFKQF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-NG 96
           KC    Q   Q+ +  + TG  +D F A+ L+        F  M  + ++F    S  N 
Sbjct: 111 KCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFDEAGSERNA 167

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N +M AY++ +    AI ++  M+ + +    + +  +  A     ++  G+ +H  
Sbjct: 168 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 227

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-------- 208
           V++ G++ DV+  N L++MY   G +  A  +F++ P  D+VSWN++++G V        
Sbjct: 228 VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287

Query: 209 ---------------------------NADNVEEAKFIYNKMPERNIIASN----SMIVL 237
                                       A   +  + I+  M + N  + +     ++ +
Sbjct: 288 IELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDM 347

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + +   + +A ++F  M  +DL+ W+ALIS       ++EA  +F  +    + V+   +
Sbjct: 348 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            +VL + A+L    A   VHALA KIG                          +FDA H 
Sbjct: 408 AAVLKSTASLEAASATRQVHALAEKIGF-------------------------IFDA-HV 441

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           +     N +I  Y KC  +  A  +F+     D+++ ++MI+  +Q D     + LFMEM
Sbjct: 442 V-----NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM 496

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G+ PD   L S+++AC  L A +QGK +HA++ K     ++  G  L+  Y K G +
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A   F    E+GV SW+A+I G A +G   ++LE+F  M   G+ PN IT   VL AC
Sbjct: 557 EDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLVDE  R+FNSM +   ++   +HY CM+DLLGRAG L +A EL+ SMP   + + 
Sbjct: 617 NHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASV 676

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           WGALLGA + H D E+G+    KL  L+P+  G HVLL+N +AS G W++V +VR +M  
Sbjct: 677 WGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKD 736

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
             + K P  S +E    +H F+ GD++HP   EI + LDE+   +   GY P+      D
Sbjct: 737 SNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHD 796

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           +D+ EKE  L  HSE+LA+AF L++  P  PIR+ KNLRIC DCH A KFIS    REI+
Sbjct: 797 LDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREII 856

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           +RD +RFHHF+ G+CSC D+W
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 189/412 (45%), Gaps = 39/412 (9%)

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIAS--NSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
           L  Y  A  +     ++  + +   +AS  N +I  + +      A R+F E+P    VS
Sbjct: 11  LTRYAAAQALLPGAHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVS 70

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           WS+L++ Y  N +   A+  F  M    V  +E  +  VL    +    + G  VHA+A+
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAM 127

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWNSMISGYLKCGSVEKAR 380
             G    + + NAL+ MY   G +  A ++FD AG   + +SWN ++S Y+K        
Sbjct: 128 ATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK-------- 179

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                                  +DQ  + + +F EM   GI+P E     V++ACT   
Sbjct: 180 -----------------------NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
            +D G+ +HA + + G + +      L+DMY+K+G VD A  +F    +  V SWNALI 
Sbjct: 217 NIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G  +NG   +++E+  +MK SG+ PN      +L AC   G  D G +    MI+ +   
Sbjct: 277 GCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADS 336

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            +    G +VD+  +   L +A ++ + M    D+  W AL+  C   G H+
Sbjct: 337 DDYIGVG-LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHD 386



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 200/426 (46%), Gaps = 70/426 (16%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  G  +H ++LK+GF + +   N LI+ Y+ C     AR++FDE P    VSW+S++ 
Sbjct: 19  ALLPGAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 206 GYVN---------------ADNVEEAKF----IYNKMPE-----------------RNII 229
            Y N               A+ V   +F    +   +P+                  ++ 
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVF 136

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEM-PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
            +N+++ ++G  G + +A R+F E   +++ VSW+ L+S Y +N+   +A+ +F  M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            +   E     V++AC     + AG  VHA+ V++G E  +   NAL+ MY   G +  A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA 256

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
             +F+   + D++SWN++ISG +  G                             HD   
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNG-----------------------------HDH-- 285

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
             + L ++M+  G+ P+   L S++ AC    A D G+ IH ++ K     +  +G  L+
Sbjct: 286 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K   +D+A++VF     + +  WNALI G +  G  D++  +F  ++K G+  N  
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRT 405

Query: 529 TFVGVL 534
           T   VL
Sbjct: 406 TLAAVL 411


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/803 (32%), Positives = 412/803 (51%), Gaps = 74/803 (9%)

Query: 39  KCQSFKQF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-NG 96
           KC    +F  Q+ +  + T L+ D F A+ L+          E    F  +  +    N 
Sbjct: 111 KCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNA 170

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +NTM+ AY++ +    AI +++ M+ +    + + +  +  A      +  G+ +H  
Sbjct: 171 VSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGA 230

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V++ G++ DV+  N L++MY+  GD+  A  +F++ P  D+VSWN+ ++G V   +   A
Sbjct: 231 VVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRA 290

Query: 217 ---------------------------------------KFIYNKMPERNIIASNSMIVL 237
                                                   F+   + + +   +  ++ +
Sbjct: 291 LELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDM 350

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD--EV 295
           + + G + +A ++F  MP++DL+ W+ALIS    +  + E L LF  M    + +D    
Sbjct: 351 YAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRT 410

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            + SVL + A+   +     VHALA KIG+    ++ N LI  Y  CG++  A K+F   
Sbjct: 411 TLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKES 470

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            + D+IS  +M++   +C                               D   + + LF+
Sbjct: 471 RSDDIISSTTMMTALSQC-------------------------------DHGEDAIKLFV 499

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M   G+ PD   L S+++ACT L A +QGK +HA++ K     +   G  L+  Y K G
Sbjct: 500 QMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCG 559

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +++A   F G  E+G+ SW+A+I G A +G   ++L++F  M   GV PN IT   VL 
Sbjct: 560 SIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLS 619

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLVD+  ++F SM +   ++   +HY CM+D+LGRAG L++A EL+ +MP   + 
Sbjct: 620 ACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANA 679

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           A WGALLGA + H D E+G     KL  L+P+  G HVLL+N +AS G WD++ +VR +M
Sbjct: 680 AVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLM 739

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
               V K P  S +E    +H F+ GD++HP   +I   L E+   +   GY P+     
Sbjct: 740 KDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDL 799

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+D+ EKE  L  HSE+LA+AF LI+     PIR+ KNLRIC DCH A K+IS+   RE
Sbjct: 800 HDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSRE 859

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I++RD +RFHHF +G+CSC D+W
Sbjct: 860 IIIRDINRFHHFTNGTCSCGDYW 882



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 193/417 (46%), Gaps = 42/417 (10%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIA--SNSMIVLFGRKGNVAEACRLFKEMPKKD 258
            S LA +  + ++     +++ + +  ++A  SN ++ L+ R    + A  +F E+P   
Sbjct: 8   GSALARFGTSRSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPC 67

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            VSWS+L++ Y  N M  +AL+ F  M    V  +E  +  VL    +   V+ G  VHA
Sbjct: 68  HVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGAQVHA 124

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD----AGHNLDLISWNSMISGYLKCG 374
           LAV   +   + + NAL+ +Y   G +  A ++FD     G   + +SWN+MIS Y+K  
Sbjct: 125 LAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVK-- 182

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                        +DQ  + + +F EM   G RP+E     V++
Sbjct: 183 -----------------------------NDQSGDAIGVFREMVWSGERPNEFGFSCVVN 213

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           ACT    L+ G+ +H  + + G + +      L+DMY KLG ++ A  VF       V S
Sbjct: 214 ACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVS 273

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WNA I G   +G   ++LE+  +MK SG+ PN  T   VL AC   G  + G +    M+
Sbjct: 274 WNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV 333

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           +           G +VD+  + G L +A ++ + MP   D+  W AL+  C   G H
Sbjct: 334 KAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMPRR-DLILWNALISGCSHDGRH 388



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 144/562 (25%), Positives = 238/562 (42%), Gaps = 110/562 (19%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+F G  +H H+LK+G  +    +N L+ +Y+ C   SAAR +FDE P    VSW+S++ 
Sbjct: 19  SLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVT 76

Query: 206 GYVNADNVEEAKFIYNKMPER------------------------------------NII 229
            Y N     +A   +  M  R                                    ++ 
Sbjct: 77  AYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVF 136

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEM----PKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            +N+++ ++G  G V EA R+F E      +++ VSW+ +IS Y +N+   +A+ +F  M
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +      +E     V++AC     ++AG  VH   V+ G E  +   NAL+ MYS  G+I
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDI 256

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  +F+     D++SWN+ ISG +  G                             HD
Sbjct: 257 EMAATVFEKMPAADVVSWNAFISGCVTHG-----------------------------HD 287

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                L L ++M+  G+ P+  TL SV+ AC    A + G+ IH ++ K     +  +  
Sbjct: 288 H--RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAV 345

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG--V 523
            L+DMY K G +D+A +VF     + +  WNALI G + +G   + L +F  M+K G  +
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDL 405

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA- 582
             N  T   VL +      +    R  +++ ++  L  +S     ++D   + G L  A 
Sbjct: 406 DVNRTTLASVLKSTASSEAICHT-RQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAI 464

Query: 583 --------EELIESMPM-------------------------SPDVATWGALLGACKKHG 609
                   +++I S  M                          PD     +LL AC    
Sbjct: 465 KVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLS 524

Query: 610 DHEMGERVGRKLVELQPDHDGF 631
            +E G++V   L++ Q   D F
Sbjct: 525 AYEQGKQVHAHLIKRQFTSDVF 546


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/801 (33%), Positives = 415/801 (51%), Gaps = 75/801 (9%)

Query: 39  KCQSFKQF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-NG 96
           KC    Q   Q+ +  + TG  +D F A+ L+        F  M  + ++F    S  N 
Sbjct: 18  KCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFDEAGSERNA 74

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N +M AY++ +    AI ++  M+ + +    + +  +  A     ++  G+ +H  
Sbjct: 75  VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 134

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-------- 208
           V++ G++ DV+  N L++MY   G +  A  +F++ P  D+VSWN++++G V        
Sbjct: 135 VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 194

Query: 209 ---------------------------NADNVEEAKFIYNKMPERNIIASN----SMIVL 237
                                       A   +  + I+  M + N  + +     ++ +
Sbjct: 195 IELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDM 254

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + +   + +A ++F  M  +DL+ W+ALIS       ++EA  +F  +    + V+   +
Sbjct: 255 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 314

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            +VL + A+L    A   VHALA KIG                          +FDA H 
Sbjct: 315 AAVLKSTASLEAASATRQVHALAEKIGF-------------------------IFDA-HV 348

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           +     N +I  Y KC  +  A  +F+     D+++ ++MI+  +Q D     + LFMEM
Sbjct: 349 V-----NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM 403

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G+ PD   L S+++AC  L A +QGK +HA++ K     ++  G  L+  Y K G +
Sbjct: 404 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 463

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A   F    E+GV SW+A+I G A +G   ++LE+F  M   G+ PN IT   VL AC
Sbjct: 464 EDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 523

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLVDE  R+FNSM +   ++   +HY CM+DLLGRAG L +A EL+ SMP   + + 
Sbjct: 524 NHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASV 583

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           WGALLGA + H D E+G+    KL  L+P+  G HVLL+N +AS G W++V +VR +M  
Sbjct: 584 WGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKD 643

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
             + K P  S +E    +H F+ GD++HP   EI + LDE+   +   GY P+      D
Sbjct: 644 SNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHD 703

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           +D+ EKE  L  HSE+LA+AF L++  P  PIR+ KNLRIC DCH A KFIS    REI+
Sbjct: 704 LDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREII 763

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           +RD +RFHHF+ G+CSC D+W
Sbjct: 764 IRDINRFHHFRDGTCSCGDYW 784


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/800 (32%), Positives = 406/800 (50%), Gaps = 73/800 (9%)

Query: 38   QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF 97
            +K +S +   Q+   ++  G  +DT+  + L+     L   I   +   IF+ +   +  
Sbjct: 259  KKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH---IFSNMSQRDAV 315

Query: 98   IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
             +NT++    Q    ++A+ L+K M  + +  D+ T   L  A +   ++F G+ +H + 
Sbjct: 316  TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 375

Query: 158  LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
             K GF S+  +   L+N+YA C D+  A   F E+ V ++V WN +L  Y   D++  + 
Sbjct: 376  TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 435

Query: 218  FIYNKM------PER------------------------NIIASN---------SMIVLF 238
             I+ +M      P +                         II +N          +I ++
Sbjct: 436  RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 495

Query: 239  GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
             + G +  A  +      KD+VSW+ +I+ Y Q    ++AL  F  M+D  +  DEV + 
Sbjct: 496  AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT 555

Query: 299  SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
            + +SACA L  +K G  +HA A   G    +  QNAL+ +YS                  
Sbjct: 556  NAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS------------------ 597

Query: 359  DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                         +CG +E++   F+     D ++W+ ++SG+ Q     E L +F+ M 
Sbjct: 598  -------------RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 644

Query: 419  HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              GI  +  T  S + A +    + QGK +HA I K G    + +   LI MY K G + 
Sbjct: 645  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 704

Query: 479  NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            +A + F     K   SWNA+I  ++ +G   ++L+ F +M  S V PN +T VGVL AC 
Sbjct: 705  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 764

Query: 539  HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            H+GLVD+G  +F SM  E+ L P  +HY C+VD+L RAG+L  A+E I+ MP+ PD   W
Sbjct: 765  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 824

Query: 599  GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
              LL AC  H + E+GE     L+EL+P+    +VLLSN++A   +WD     R  M  +
Sbjct: 825  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 884

Query: 659  GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            GV K PG S IE    IH F  GD+ HP  +EI     ++ K+    GY  D   +  ++
Sbjct: 885  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 944

Query: 719  DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
              E+K+  +F HSEKLAI+FGL+++    PI +MKNLR+CNDCH   KF+S+  +REI+V
Sbjct: 945  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1004

Query: 779  RDRHRFHHFKHGSCSCMDFW 798
            RD +RFHHF+ G+CSC D+W
Sbjct: 1005 RDAYRFHHFEGGACSCKDYW 1024



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 151/643 (23%), Positives = 278/643 (43%), Gaps = 82/643 (12%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +LE  L+   S  +  ++ SQ++  GL ++   + +L  F    L   ++  +FK+F  +
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF---YLFKGDLYGAFKVFDEM 106

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA---SALRLSVF 148
                F +N M++    RN+  +   L+  M++ NV  +  T+  + +A    ++   V 
Sbjct: 107 PERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV 166

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           E   IH  +L  G      V N LI++Y+  G +  AR++FD   + D  SW ++++G  
Sbjct: 167 EQ--IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 224

Query: 209 NADNVEEA------KFIYNKMPERNIIAS------------------------------- 231
             +   EA       ++   MP     +S                               
Sbjct: 225 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 284

Query: 232 --NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N+++ L+   GN+  A  +F  M ++D V+++ LI+   Q    E+A+ LF  M    
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 344

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D   + S++ AC+    +  G  +HA   K+G      ++ AL+++Y+ C +I TA 
Sbjct: 345 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 404

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
             F                               +  +E +VV W+ M+  Y   D    
Sbjct: 405 DYF------------------------------LETEVE-NVVLWNVMLVAYGLLDDLRN 433

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           +  +F +MQ   I P++ T  S++  C  L  L+ G+ IH+ I K   ++N+ + + LID
Sbjct: 434 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY KLG +D A ++      K V SW  +I G+      DK+L  F +M   G+  +E+ 
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 530 FVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
               + AC  +  + EG + H  + +       +      +V L  R G ++E+    E 
Sbjct: 554 LTNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESYLAFEQ 611

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
                ++A W AL+   ++ G++E   RV  ++     D++ F
Sbjct: 612 TEAGDNIA-WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 653



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/616 (22%), Positives = 269/616 (43%), Gaps = 79/616 (12%)

Query: 37  LQKCQ----SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L+ C+    +F    QI ++++  GL   T   + LI   +    F++++   ++F  L 
Sbjct: 153 LEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRN-GFVDLAR--RVFDGLR 209

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
             +   +  M+    +     +AI L+  M    +    Y +  +  A     S+  G+ 
Sbjct: 210 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 269

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  VLK GF SD YV N L+++Y   G+L +A  +F      D V++N+++ G      
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 329

Query: 213 VEEAKFIYNKM------PERNIIAS---------------------------------NS 233
            E+A  ++ +M      P+ N +AS                                  +
Sbjct: 330 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 389

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ +  ++  A   F E   +++V W+ ++  Y   +    +  +F  M    ++ +
Sbjct: 390 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +    S+L  C  L  ++ G  +H+  +K   +    + + LI MY+  G++ TA     
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA----- 504

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                    W+ +I                     KDVVSW+TMI+GY Q++   + L+ 
Sbjct: 505 ---------WDILIR-----------------FAGKDVVSWTTMIAGYTQYNFDDKALTT 538

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F +M   GIR DE  L + +SAC  L AL +G+ IHA    +G   +      L+ +Y +
Sbjct: 539 FRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSR 598

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G ++ +   F  TE     +WNAL+ GF  +G  +++L +F  M + G+  N  TF   
Sbjct: 599 CGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSA 658

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           + A      + +G +  +++I +   +  ++    ++ +  + G + +AE+    +    
Sbjct: 659 VKAASETANMKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 717

Query: 594 DVATWGALLGACKKHG 609
           +V +W A++ A  KHG
Sbjct: 718 EV-SWNAIINAYSKHG 732



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 2/193 (1%)

Query: 417 MQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +++ GIRP+  TL  ++  C     +LD+G+ +H+ I K GL  N  L   L D Y+  G
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +  A +VF    E+ + +WN +I   A   L  +   +F  M    VTPNE TF GVL 
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           ACR   +  +     ++ I    L  ++     ++DL  R G +  A  + + + +  D 
Sbjct: 155 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL-KDH 213

Query: 596 ATWGALLGACKKH 608
           ++W A++    K+
Sbjct: 214 SSWVAMISGLSKN 226


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/800 (32%), Positives = 406/800 (50%), Gaps = 73/800 (9%)

Query: 38   QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF 97
            +K +S +   Q+   ++  G  +DT+  + L+     L   I   +   IF+ +   +  
Sbjct: 299  KKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH---IFSNMSQRDAV 355

Query: 98   IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
             +NT++    Q    ++A+ L+K M  + +  D+ T   L  A +   ++F G+ +H + 
Sbjct: 356  TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415

Query: 158  LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
             K GF S+  +   L+N+YA C D+  A   F E+ V ++V WN +L  Y   D++  + 
Sbjct: 416  TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 475

Query: 218  FIYNKM------PER------------------------NIIASN---------SMIVLF 238
             I+ +M      P +                         II +N          +I ++
Sbjct: 476  RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 535

Query: 239  GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
             + G +  A  +      KD+VSW+ +I+ Y Q    ++AL  F  M+D  +  DEV + 
Sbjct: 536  AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT 595

Query: 299  SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
            + +SACA L  +K G  +HA A   G    +  QNAL+ +YS                  
Sbjct: 596  NAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS------------------ 637

Query: 359  DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                         +CG +E++   F+     D ++W+ ++SG+ Q     E L +F+ M 
Sbjct: 638  -------------RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684

Query: 419  HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              GI  +  T  S + A +    + QGK +HA I K G    + +   LI MY K G + 
Sbjct: 685  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 479  NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            +A + F     K   SWNA+I  ++ +G   ++L+ F +M  S V PN +T VGVL AC 
Sbjct: 745  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804

Query: 539  HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            H+GLVD+G  +F SM  E+ L P  +HY C+VD+L RAG+L  A+E I+ MP+ PD   W
Sbjct: 805  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864

Query: 599  GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
              LL AC  H + E+GE     L+EL+P+    +VLLSN++A   +WD     R  M  +
Sbjct: 865  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924

Query: 659  GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            GV K PG S IE    IH F  GD+ HP  +EI     ++ K+    GY  D   +  ++
Sbjct: 925  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 984

Query: 719  DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
              E+K+  +F HSEKLAI+FGL+++    PI +MKNLR+CNDCH   KF+S+  +REI+V
Sbjct: 985  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044

Query: 779  RDRHRFHHFKHGSCSCMDFW 798
            RD +RFHHF+ G+CSC D+W
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 151/643 (23%), Positives = 278/643 (43%), Gaps = 82/643 (12%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +LE  L+   S  +  ++ SQ++  GL ++   + +L  F    L   ++  +FK+F  +
Sbjct: 90  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF---YLFKGDLYGAFKVFDEM 146

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA---SALRLSVF 148
                F +N M++    RN+  +   L+  M++ NV  +  T+  + +A    ++   V 
Sbjct: 147 PERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV 206

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           E   IH  +L  G      V N LI++Y+  G +  AR++FD   + D  SW ++++G  
Sbjct: 207 EQ--IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264

Query: 209 NADNVEEA------KFIYNKMPERNIIAS------------------------------- 231
             +   EA       ++   MP     +S                               
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324

Query: 232 --NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N+++ L+   GN+  A  +F  M ++D V+++ LI+   Q    E+A+ LF  M    
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D   + S++ AC+    +  G  +HA   K+G      ++ AL+++Y+ C +I TA 
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
             F                               +  +E +VV W+ M+  Y   D    
Sbjct: 445 DYF------------------------------LETEVE-NVVLWNVMLVAYGLLDDLRN 473

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           +  +F +MQ   I P++ T  S++  C  L  L+ G+ IH+ I K   ++N+ + + LID
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY KLG +D A ++      K V SW  +I G+      DK+L  F +M   G+  +E+ 
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 530 FVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
               + AC  +  + EG + H  + +       +      +V L  R G ++E+    E 
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESYLAFEQ 651

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
                ++A W AL+   ++ G++E   RV  ++     D++ F
Sbjct: 652 TEAGDNIA-WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 693



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 142/626 (22%), Positives = 271/626 (43%), Gaps = 79/626 (12%)

Query: 27  TINLSILETHLQKCQ----SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           T N       L+ C+    +F    QI ++++  GL   T   + LI   +    F++++
Sbjct: 183 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRN-GFVDLA 241

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
              ++F  L   +   +  M+    +     +AI L+  M    +    Y +  +  A  
Sbjct: 242 R--RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 299

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              S+  G+ +H  VLK GF SD YV N L+++Y   G+L +A  +F      D V++N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359

Query: 203 ILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------- 231
           ++ G       E+A  ++ +M      P+ N +AS                         
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419

Query: 232 --------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                    +++ L+ +  ++  A   F E   +++V W+ ++  Y   +    +  +F 
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    ++ ++    S+L  C  L  ++ G  +H+  +K   +    + + LI MY+  G
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           ++ TA              W+ +I                     KDVVSW+TMI+GY Q
Sbjct: 540 KLDTA--------------WDILIR-----------------FAGKDVVSWTTMIAGYTQ 568

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           ++   + L+ F +M   GIR DE  L + +SAC  L AL +G+ IHA    +G   +   
Sbjct: 569 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 628

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              L+ +Y + G ++ +   F  TE     +WNAL+ GF  +G  +++L +F  M + G+
Sbjct: 629 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 688

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             N  TF   + A      + +G +  +++I +   +  ++    ++ +  + G + +AE
Sbjct: 689 DNNNFTFGSAVKAASETANMKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 747

Query: 584 ELIESMPMSPDVATWGALLGACKKHG 609
           +    +    +V +W A++ A  KHG
Sbjct: 748 KQFLEVSTKNEV-SWNAIINAYSKHG 772



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 4/232 (1%)

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           K R +F  +      S++ +    ++ + F E       +++ GIRP+  TL  ++  C 
Sbjct: 38  KTRTVFPTLCGTRRASFAAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCL 95

Query: 438 HL-VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
               +LD+G+ +H+ I K GL  N  L   L D Y+  G +  A +VF    E+ + +WN
Sbjct: 96  KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
            +I   A   L  +   +F  M    VTPNE TF GVL ACR   +  +     ++ I  
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             L  ++     ++DL  R G +  A  + + + +  D ++W A++    K+
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-DHSSWVAMISGLSKN 266


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/721 (34%), Positives = 400/721 (55%), Gaps = 63/721 (8%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           ++  TY  + Q  A   S  +GK +H  +       D  +   L++ YA CGDL   R++
Sbjct: 97  LETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRV 156

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE-A 247
           FD     ++  WN +++ Y    + +E+  ++  M E+ I            +G   E A
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESA 204

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             LF ++  +D++SW+++IS Y  N + E  L ++  M+   + VD   ++SVL  CAN 
Sbjct: 205 FELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANS 264

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G +VH+LA+K   E  IN  N L+ MYS CG++  A ++F+     +++SW SMI
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 368 SGYLKCGSVEKARALFDAM----IEKDVVSWSTMI-----SG------------------ 400
           +GY + G  + A  L   M    ++ DVV+ ++++     SG                  
Sbjct: 325 AGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME 384

Query: 401 ------------YAQHDQFSETLSLFMEMQHHGI----------RPDEATLVSVISACTH 438
                       YA+        S+F  M    I          +PD  T+  V+ AC  
Sbjct: 385 SNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACAS 444

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL++GK IH YI +NG   +  +   L+D+Y+K G +  A  +F     K + SW  +
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVM 504

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+ M+G  ++++  F+EM+ +G+ P+E++F+ +L AC H GL+++G R F  M  +  
Sbjct: 505 IAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP  +HY CMVDLL R G L +A E +E++P++PD   WGALL  C+ + D E+ E+V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++ EL+P++ G++VLL+NI+A   +W++V  +R  + ++G+ K PGCS IE  G ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLF 684

Query: 679 LAGDR-THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           ++G+  +HP    I+++L +M +K+K EG+ P T     + D+ +KE  L  HSEKLA+A
Sbjct: 685 VSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+T+ P   IR+ KNLR+C DCH  AKF+S+   REIV+RD +RFHHFK G CSC  F
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGF 804

Query: 798 W 798
           W
Sbjct: 805 W 805



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 232/528 (43%), Gaps = 86/528 (16%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   K FT   ++ S +    +  D     +L+ F        E     ++F  +E 
Sbjct: 106 LQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKE---GRRVFDTMEK 162

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N +++N M+  Y +    +++ICL+K+M+   +                  S FE   +
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESAFE---L 207

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL----DLVSWNSILAGYVN 209
            D +     D DV   N++I+ Y   G       ++ +   L    DL +  S+L G  N
Sbjct: 208 FDKLC----DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 210 ADNVEEAKFIYN----KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           +  +   K +++       ER I  SN+++ ++ + G++  A R+F++M ++++VSW+++
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+ Y ++   + A+ L   M    V +D V + S+L ACA    +  G  VH       +
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG---------------- 369
           E  + + NAL+ MY+ CG +  A  +F      D+ISWN+MI                  
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 370 ---------------------------------YLKCGSVEKARALFDAMIEKDVVSWST 396
                                            Y+KCG +  AR LFD +  KD+VSW+ 
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI+GY  H   +E ++ F EM+  GI PDE + +S++ AC+H   L+QG W   YI KN 
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKND 562

Query: 457 LKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
             I   L     ++D+  + G +  A E           + W AL+ G
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 29/387 (7%)

Query: 67  RLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           R I FS  LL       ++  + ++F  +   N   + +M+  Y +      AI L + M
Sbjct: 284 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQM 343

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
               V +D      +  A A   S+  GK +HD++     +S+++V N L++MYA CG +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSM 403

Query: 183 SAARKLFDESPVLDLVSWNS--------------ILAGYVNADNVEEAKFIYNKMPERNI 228
            AA  +F    V D++SWN+              +L    +   +E  K I+  +  RN 
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL-RNG 462

Query: 229 IAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            +S     N+++ L+ + G +  A  LF  +P KDLVSW+ +I+ Y  +    EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSC 342
            M D  +  DEV  +S+L AC++  +++ G    + +     IE  +     ++ + S  
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 343 GEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMI 398
           G ++ A +  +      D   W +++ G      +E A  + + + E   ++   +  + 
Sbjct: 583 GNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLA 642

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPD 425
           + YA+ +++ E   L  ++   G+R +
Sbjct: 643 NIYAEAEKWEEVKRLREKIGKQGLRKN 669



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/274 (19%), Positives = 104/274 (37%), Gaps = 55/274 (20%)

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           I+  V  ++  I  + Q       + L    Q   +  +  T  SV+  C  L +   GK
Sbjct: 62  IDHQVTDYNAKILHFCQLGDLENAMELICMCQKSEL--ETKTYGSVLQLCAGLKSFTDGK 119

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLG------------------------------- 475
            +H+ I+ N + ++  LG  L+  Y   G                               
Sbjct: 120 KVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 476 ------CV--------------DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
                 C+              ++A E+F    ++ V SWN++I G+  NGL ++ L ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            +M   G+  +  T + VL  C + G +  G +  +S+  +   E        ++D+  +
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSK 298

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            G L  A  + E M    +V +W +++    + G
Sbjct: 299 CGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDG 331


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/800 (32%), Positives = 405/800 (50%), Gaps = 73/800 (9%)

Query: 38   QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF 97
            +K +S +   Q+   ++  G  +DT+  + L+     L   I   +   IF+ +   +  
Sbjct: 282  KKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEH---IFSNMSQRDAV 338

Query: 98   IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
             +NT++    Q    ++A+ L+K M  + +  D+ T   L  A +   ++F G+ +H + 
Sbjct: 339  TYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYT 398

Query: 158  LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
             K GF S+  +   L+N+YA C D+  A   F E+ V ++V WN +L  Y   D++  + 
Sbjct: 399  TKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSF 458

Query: 218  FIYNKMPERNIIAS---------------------------------------NSMIVLF 238
             I+ +M    I+ +                                       + +I ++
Sbjct: 459  RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMY 518

Query: 239  GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
             + G +  A  +      KD+VSW+ +I+ Y Q    ++AL  F  M+D  +  DEV + 
Sbjct: 519  AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT 578

Query: 299  SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
            + +SACA L  +K G  +HA A   G    +  QNAL+ +YS                  
Sbjct: 579  NAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS------------------ 620

Query: 359  DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                         KCG++E+A   F+     D ++W+ ++SG+ Q     E L +F  M 
Sbjct: 621  -------------KCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMN 667

Query: 419  HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              GI  +  T  S + A +    + QGK +HA I K G    + +   +I MY K G + 
Sbjct: 668  REGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 479  NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            +A + F     K   SWNA+I  ++ +G   ++L+ F +M  S V PN +T VGVL AC 
Sbjct: 728  DAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 787

Query: 539  HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
            H+GLVD+G  +F SM  E+ L P  +HY C+VD+L RAG+L  A++ I  MP+ PD   W
Sbjct: 788  HIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVW 847

Query: 599  GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
              LL AC  H + E+GE     L+EL+P+    +VLLSN++A   +WD     R  M  +
Sbjct: 848  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEK 907

Query: 659  GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            GV K PG S IE    IH F  GD+ HP  +EI     ++ K+    GY  D   +  ++
Sbjct: 908  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSEL 967

Query: 719  DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
             QE+K+ T+F HSEKLAI+FGL+++    PI +MKNLR+CNDCH   KF+S+  +REI+V
Sbjct: 968  QQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIV 1027

Query: 779  RDRHRFHHFKHGSCSCMDFW 798
            RD +RFHHF+ G+CSC D+W
Sbjct: 1028 RDAYRFHHFEGGACSCKDYW 1047



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 149/643 (23%), Positives = 279/643 (43%), Gaps = 82/643 (12%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +LE  L+   S  +  ++ SQ++  G   +   + +L+ F    L   ++  + K+F  +
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDF---YLFKGDLDGALKVFDEM 129

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA---SALRLSVF 148
                F +N M++    R++  +  CL+  M+N NV  +  T+  + +A    ++   V 
Sbjct: 130 PERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVV 189

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           E   IH  ++  G      V N LI++Y+  G +  AR++FD   + D  SW ++++G  
Sbjct: 190 EQ--IHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 209 -NADNVEEAK-----FIYNKMPERNIIAS------------------------------- 231
            N   VE  +     ++   MP     +S                               
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 232 --NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N+++ L+   G++  A  +F  M ++D V+++ LI+   Q    E+A+ LF  M    
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D   + S++ AC++   + +G  +HA   K+G      ++ AL+++Y+ C +I TA 
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
             F                               +  +E +VV W+ M+  Y   D    
Sbjct: 428 NYF------------------------------LETEVE-NVVLWNVMLVAYGLLDDLRN 456

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           +  +F +MQ   I P++ T  S++  C  L  L+ G+ IH+ I K   ++N+ + + LID
Sbjct: 457 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLID 516

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY KLG +D A ++      K V SW  +I G+      DK+L  F +M   G+  +E+ 
Sbjct: 517 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 530 FVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
               + AC  +  + EG + H  + +       +      +V L  + G ++EA    E 
Sbjct: 577 LTNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQ 634

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
                ++A W AL+   ++ G++E   RV  ++     D + F
Sbjct: 635 TEAGDNIA-WNALVSGFQQSGNNEEALRVFARMNREGIDSNNF 676



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/626 (23%), Positives = 271/626 (43%), Gaps = 79/626 (12%)

Query: 27  TINLSILETHLQKCQ----SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           T N       L+ C+    +F    QI +++I  GL   T   + LI   +    F++ +
Sbjct: 166 TPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRN-GFVDRA 224

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
              ++F  L   +   +  M+    +     +AI L+  M    +    Y +  +  A  
Sbjct: 225 R--RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACK 282

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              S+  G+ +H  VLK GF SD YV N L+++Y   G L +A  +F      D V++N+
Sbjct: 283 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNT 342

Query: 203 ILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------- 231
           ++ G       E+A  ++ +M      P+ N +AS                         
Sbjct: 343 LINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLG 402

Query: 232 --------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                    +++ L+ +  ++  A   F E   +++V W+ ++  Y   +    +  +F 
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 462

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    ++ ++    S+L  C  L  ++ G  +H+  +K   +    + + LI MY+  G
Sbjct: 463 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           ++ TA              W+ +I                     KDVVSW+TMI+GY Q
Sbjct: 523 KLDTA--------------WDILIR-----------------FAGKDVVSWTTMIAGYTQ 551

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           ++   + L+ F +M   GIR DE  L + +SAC  L AL +G+ IHA    +G   +   
Sbjct: 552 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 611

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              L+ +Y K G ++ A   F  TE     +WNAL+ GF  +G  +++L +F+ M + G+
Sbjct: 612 QNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGI 671

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             N  TF   + A      + +G +  +++I +   +  ++    ++ +  + G + +A+
Sbjct: 672 DSNNFTFGSAVKAASETANMKQG-KQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAK 730

Query: 584 ELIESMPMSPDVATWGALLGACKKHG 609
           +    + M  +V +W A++ A  KHG
Sbjct: 731 KQFLELSMKNEV-SWNAMINAYSKHG 755



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           K R +   + +    S++ +    ++ + F E  +    +++ GIRP+  TL  ++  C 
Sbjct: 21  KTRTVLRTLCQIRRASFTAISVSISEDESFQE--NGIDSVENCGIRPNHQTLKWLLEGCL 78

Query: 438 HL-VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
               +LD+G+ +H+ I K G   N+ L   L+D Y+  G +D AL+VF    E+ + +WN
Sbjct: 79  KTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWN 138

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
            +I   A   L+ K   +F  M    VTPNE TF GVL ACR   +  +     ++ I  
Sbjct: 139 KMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIY 198

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             L  ++     ++DL  R G +  A  + + + +  D ++W A++    K+
Sbjct: 199 QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL-KDHSSWVAMISGLSKN 249


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 279/824 (33%), Positives = 423/824 (51%), Gaps = 111/824 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +     F +NTM+ AY+    P  A+ LY  M    V +   ++P L +A A   
Sbjct: 137 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLR 196

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSIL 204
            +  G  +H  ++K G+ S  ++ N L++MYA   DLSAAR+LFD      D V WNSIL
Sbjct: 197 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 256

Query: 205 AGYVNADNVEEAKFIYNKM------PERNIIAS--------------------------- 231
           + Y  +    E   ++ +M      P    I S                           
Sbjct: 257 SSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH 316

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  N++I ++ R G + +A R+ ++M   D+V+W++LI  Y QN MY+EAL  F +
Sbjct: 317 SSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSD 376

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           MI      DEV + S+++A   L+ + AG  +HA  +K G +  + + N LI MYS C  
Sbjct: 377 MIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNL 436

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGY-------------------------------LKC 373
                + F   H+ DLISW ++I+GY                               L+ 
Sbjct: 437 TCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA 496

Query: 374 GSVEKA-------------RALFDAMIEKDVV-------------------------SWS 395
            SV K+             + L D +I+ ++V                         SW+
Sbjct: 497 SSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWT 556

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +MIS  A +   SE + LF  M   G+  D   L+ ++SA   L AL++G+ IH Y+ + 
Sbjct: 557 SMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRK 616

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G  +   +   ++DMY   G + +A  VF   E KG+  + ++I  + M+G    ++E+F
Sbjct: 617 GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 676

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            +M+   V+P+ I+F+ +L AC H GL+DEG      M  E+ LEP  +HY C+VD+LGR
Sbjct: 677 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 736

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           A  + EA E ++ M   P    W ALL AC+ H + E+GE   ++L+EL+P + G  VL+
Sbjct: 737 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 796

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN+ A +GRW+DV +VR  M   G+ K PGCS IE +G +H+F A D++HP+  EI   L
Sbjct: 797 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 856

Query: 696 DEMAKKLKLE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
            E+ +KL+ E GY  DT  V  ++D+ EK   L  HSE++AIA+GL+       +RI KN
Sbjct: 857 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKN 916

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCHT  K +S+ F R+IV+RD +RFHHF+ G CSC D W
Sbjct: 917 LRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 141/561 (25%), Positives = 244/561 (43%), Gaps = 96/561 (17%)

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA--GFDSDVYVNNTLINMYAVCGDL 182
           NN  V+ + Y L  +    R +V +G+ +H  + K    F+ D ++   L+ MY  CG L
Sbjct: 76  NNSPVEAFAYVL--ELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSL 132

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------------PE----- 225
             A K+FDE P     +WN+++  YV+      A  +Y  M            P      
Sbjct: 133 DDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKAC 192

Query: 226 ---RNIIAS-------------------NSMIVLFGRKGNVAEACRLFKEMPKK-DLVSW 262
              R+I +                    N+++ ++ +  +++ A RLF    +K D V W
Sbjct: 193 AKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLW 252

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           ++++S Y  +    E L LF  M       +   +VS L+AC   +  K G  +HA  +K
Sbjct: 253 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 312

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
                                          + H+ +L   N++I+ Y +CG + +A  +
Sbjct: 313 ------------------------------SSTHSSELYVCNALIAMYTRCGKMPQAERI 342

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
              M   DVV+W+++I GY Q+  + E L  F +M   G + DE ++ S+I+A   L  L
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL 402

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
             G  +HAY+ K+G   N  +G TLIDMY K          F    +K + SW  +I G+
Sbjct: 403 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGY 462

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRH------FNSM 553
           A N    ++LE+F ++ K  +  +E+    +L A    + M +V E H H       +++
Sbjct: 463 AQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV 522

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           IQ             +VD+ G+   +  A  + ES+    DV +W +++ +   +G+   
Sbjct: 523 IQNE-----------LVDVYGKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGNESE 570

Query: 614 GERVGRKLVELQPDHDGFHVL 634
              + R++VE     D   +L
Sbjct: 571 AVELFRRMVETGLSADSVALL 591



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 206/460 (44%), Gaps = 71/460 (15%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  + +I   + + +   +N++++ Y+Q  + ++A+  +  M+      D  +   +  
Sbjct: 335 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 394

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           AS    ++  G  +H +V+K G+DS++ V NTLI+MY+ C       + F      DL+S
Sbjct: 395 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 454

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER--------------------------------- 226
           W +++AGY   D   EA  ++  + ++                                 
Sbjct: 455 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL 514

Query: 227 -----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                + +  N ++ ++G+  N+  A R+F+ +  KD+VSW+++IS    N    EA+ L
Sbjct: 515 RKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVEL 574

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M++  +  D V ++ +LSA A+L+ +  G  +H   ++ G     ++  A++ MY+ 
Sbjct: 575 FRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYAC 634

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG++ +A+ +FD      L+ + SMI+ Y   G  + A  LFD                 
Sbjct: 635 CGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFD----------------- 677

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKIN 460
                         +M+H  + PD  + ++++ AC+H   LD+G+ ++     +  L+  
Sbjct: 678 --------------KMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 723

Query: 461 SILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALI 499
                 L+DM  +  CV  A E V     E     W AL+
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALL 763


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/661 (37%), Positives = 374/661 (56%), Gaps = 64/661 (9%)

Query: 140 ASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           A+ +R    E G+ +H H   + F   V+++N L++MYA CG L  A+ LF         
Sbjct: 95  AACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLF--------- 145

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                 ++M  R++ + N+MIV + + G + +A +LF EMP++D
Sbjct: 146 ----------------------DEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRD 183

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVH 317
             SW+A IS Y  +    EAL LF  M  H R   ++  + S L+A A +  ++ G  +H
Sbjct: 184 NFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIH 243

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
              ++  +                               NLD + W++++  Y KCGS++
Sbjct: 244 GYLIRTEL-------------------------------NLDEVVWSALLDLYGKCGSLD 272

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +AR +FD M ++DVVSW+TMI    +  +  E   LF ++   G+RP+E T   V++AC 
Sbjct: 273 EARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACA 332

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
              A   GK +H Y+   G    S   + L+ MY K G    A  VF+   +  + SW +
Sbjct: 333 DHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTS 392

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           LI+G+A NG  D++L  F  + +SG  P+++T+VGVL AC H GLVD+G  +F+S+ ++H
Sbjct: 393 LIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKH 452

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            L   + HY C++DLL R+G  KEAE +I++MP+ PD   W +LLG C+ HG+ E+ +R 
Sbjct: 453 GLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRA 512

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
            + L E++P++   ++ L+NI+A+ G W +V  VR  M   G+VK PG S IE    +H 
Sbjct: 513 AKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHV 572

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           FL GD +HP+ ++I   L E++KK+K EGY PDT  V  D+++E+KE  L  HSEKLA+ 
Sbjct: 573 FLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVV 632

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FG+I+  P  PI++ KNLR C DCHTA K+IS+   R+I VRD +RFH F+ GSCSC D+
Sbjct: 633 FGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDY 692

Query: 798 W 798
           W
Sbjct: 693 W 693



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 183/362 (50%), Gaps = 18/362 (4%)

Query: 257 KDLVS----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           KDLVS    +   +    Q +  +EA+ L ++  DHR      V  ++++AC     ++ 
Sbjct: 49  KDLVSEDNKFEEAVDVLCQQKRVKEAVEL-LHRTDHRPSAR--VYSTLIAACVRHRALEL 105

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VHA          + + N L+ MY+ CG +  A+ LFD   + DL SWN+MI GY K
Sbjct: 106 GRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAK 165

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVS 431
            G +E+AR LFD M ++D  SW+  ISGY  H+Q  E L LF  MQ H     ++ TL S
Sbjct: 166 LGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSS 225

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            ++A   +  L  GK IH Y+ +  L ++ ++ + L+D+Y K G +D A  +F   +++ 
Sbjct: 226 ALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRD 285

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V SW  +I     +G  ++   +F ++ +SGV PNE TF GVL AC      D    H  
Sbjct: 286 VVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNAC-----ADHAAEHLG 340

Query: 552 SMIQEHRL----EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             +  + +    +P S     +V +  + G  + A  +   M   PD+ +W +L+    +
Sbjct: 341 KEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEM-HQPDLVSWTSLIVGYAQ 399

Query: 608 HG 609
           +G
Sbjct: 400 NG 401



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 178/385 (46%), Gaps = 51/385 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALR 144
           K+F  +   + F +N  +  Y+  N P++A+ L+++M  +     N +T      ASA  
Sbjct: 174 KLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAI 233

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             +  GK IH ++++   + D  V + L+++Y  CG L  AR +FD+    D+VSW +++
Sbjct: 234 PCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMI 293

Query: 205 -------------------------------AGYVN--ADNVEE--AKFIYNKM----PE 225
                                          AG +N  AD+  E   K ++  M     +
Sbjct: 294 HRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYD 353

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               A ++++ ++ + GN   A R+F EM + DLVSW++LI  Y QN   +EAL  F  +
Sbjct: 354 PGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELL 413

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGE 344
           +      D+V  V VLSAC +  +V  G    H++  K G+    +    +I + +  G 
Sbjct: 414 LQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGR 473

Query: 345 ITTAEKLFDAGHNL----DLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTM 397
              AE + D   N+    D   W S++ G    G++E A+    A+ E   ++  ++ T+
Sbjct: 474 FKEAENIID---NMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITL 530

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGI 422
            + YA    +SE  ++  +M + GI
Sbjct: 531 ANIYANAGLWSEVANVRKDMDNMGI 555



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 19/228 (8%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++   M+  G    +FA S L+   +          + ++F  +  P+   + +++  Y 
Sbjct: 342 EVHGYMMHAGYDPGSFAISALVHMYSKCG---NTRVARRVFNEMHQPDLVSWTSLIVGYA 398

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG-KLIHDHVLKAGF--DS 164
           Q   P +A+  ++L+L +    D  TY  +  A      V +G +  H    K G    +
Sbjct: 399 QNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTA 458

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGYVNADNVE----EAKFI 219
           D Y    +I++ A  G    A  + D  PV  D   W S+L G     N+E     AK +
Sbjct: 459 DHYA--CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKAL 516

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP-----KKDLVSW 262
           Y   PE N     ++  ++   G  +E   + K+M      KK   SW
Sbjct: 517 YEIEPE-NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSW 563


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/536 (42%), Positives = 329/536 (61%), Gaps = 31/536 (5%)

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +++I CY  +  +  ++ ++  M  + +  D     +VL + A L   + G ++H   ++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G E  + +  AL++MY +C                                SV  AR +
Sbjct: 171 MGFESNVYVSTALVNMYGTCS-------------------------------SVSDARQV 199

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD + ++++VSW+ +I+GY  +  F + + +F EMQ  G +P E T+V V+ AC HL AL
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +QG+WI  YI  N L++N  +GT LIDMY K G VD A ++F     K V +WN LI G+
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           AMNG  + +L+ FS M      P+E+TF+GVL AC H GLV+EG  +F SM +E  L P 
Sbjct: 320 AMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPR 379

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            +HYGCMVDLLGRAG L EA++LI++M M PD   W  LLGAC+ HG+ ++GE   +KL+
Sbjct: 380 IEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLL 439

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL+P++   +VLL+N++A   RWD V EVR MM  R V K+PGCS IE + +++EF+  +
Sbjct: 440 ELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSN 499

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
              P   E+  +L +M KKLKL GY  DT   ++DI++EEKE +L  HSEKLA+AFGL+ 
Sbjct: 500 YIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLK 559

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                 +RI+KNLRIC DCH   K +S+ + R+I VRDR+RFHHF  G+CSC D+W
Sbjct: 560 SPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 183/398 (45%), Gaps = 48/398 (12%)

Query: 35  THLQKCQS-FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF-KIFAFLE 92
           +HL K  S      Q+LSQMI+  +  D     +LI FS     F   +  F + + F++
Sbjct: 47  SHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAASALLFTQFYGFID 106

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           S    + N+M+R Y   N    ++ +Y  M  N +  D+ T+P + ++ A       GK 
Sbjct: 107 SD---LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKA 163

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----- 207
           IH  +++ GF+S+VYV+  L+NMY  C  +S AR++FDE P  ++VSWN+++ GY     
Sbjct: 164 IHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRM 223

Query: 208 -------------VNADNVE-----------------EAKFI-----YNKMPERNIIASN 232
                          A  VE                 + ++I     +N++   N+    
Sbjct: 224 FRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRL-RLNVFVGT 282

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ + G V EA ++FK M  K++ +W+ LIS Y  N   E AL  F  MI  +   
Sbjct: 283 ALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKP 342

Query: 293 DEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           DEV  + VL AC +  +V  G T   ++  + G+   I     ++ +    G +  A++L
Sbjct: 343 DEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQL 402

Query: 352 FDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
             A     D I W  ++      G+++        ++E
Sbjct: 403 IQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLE 440



 Score =  129 bits (323), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 135/251 (53%), Gaps = 6/251 (2%)

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F   I+ D+ +  +MI  Y   ++   ++ ++ +M  +GI PD +T  +V+ +   L   
Sbjct: 101 FYGFIDSDLCN--SMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQ 158

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           + GK IH  I + G + N  + T L++MY     V +A +VF    ++ + SWNALI G+
Sbjct: 159 ELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGY 218

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
             N +  K +++F EM+ +G  P E+T VGVL AC H+G +++G R  +  I  +RL  N
Sbjct: 219 NHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLN 277

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
                 ++D+  + G++ EAE++ ++M +  +V TW  L+     +G  E   +   +++
Sbjct: 278 VFVGTALIDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMI 336

Query: 623 --ELQPDHDGF 631
             + +PD   F
Sbjct: 337 MEKFKPDEVTF 347



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 165/367 (44%), Gaps = 70/367 (19%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E N+  S +++ ++G   +V++A ++F E+P +++VSW+ALI+ Y  N M+ + + +F  
Sbjct: 174 ESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFRE 233

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M        EV +V VL ACA+L  +  G           I+ YI+  N L         
Sbjct: 234 MQIAGAKPVEVTMVGVLLACAHLGALNQGR---------WIDDYID-HNRL--------- 274

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                        L++    ++I  Y KCG V++A  +F AM  K+V +W+ +ISGYA +
Sbjct: 275 ------------RLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMN 322

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSIL 463
            +    L  F  M     +PDE T + V+ AC H   +++G+     +++  GL+     
Sbjct: 323 GRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEH 382

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              ++D+  + G +D A +               LI   +M                   
Sbjct: 383 YGCMVDLLGRAGFLDEAQQ---------------LIQAMSMQ------------------ 409

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEA 582
            P+ I +  +LGACR  G +  G      +++   LEPN+ ++Y  + +L  R     + 
Sbjct: 410 -PDPIIWRELLGACRIHGNIQLGEFAIKKLLE---LEPNNGENYVLLANLYARDQRWDKV 465

Query: 583 EELIESM 589
            E+ E M
Sbjct: 466 GEVREMM 472


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/795 (33%), Positives = 412/795 (51%), Gaps = 77/795 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I  ++I  GL  D    + L+        F +M     +F+ +   +  ++ TM+    
Sbjct: 180 KIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMK---SVFSRMGQSSVLLWTTMIAGCS 236

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q    ++ + +++ M    V  +  TY  + +      +V EG++I   +L++ F S   
Sbjct: 237 QNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTL 296

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVE------------ 214
           +  +LI++Y  CG L  A+ L +     D+V+WN+++     N DN E            
Sbjct: 297 LATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEG 356

Query: 215 ---------------------------EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247
                                       A+ +   + +R +   NS+I ++G+ G    A
Sbjct: 357 FGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAA 416

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             +F+ MP+KD VSW+A+I+    N  +++AL LF  M    +  +E  ++S+L AC  L
Sbjct: 417 MSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGL 476

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +K    +HA A            N+     ++ G                    NS++
Sbjct: 477 EDLKLARQIHARAAA-----GGFGGNS-----TAVG--------------------NSVV 506

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF--SETLSLFMEMQHHGIRPD 425
           + Y +CGS+  A+  FD++ EK +V+WS +++ YAQ            F EM+  GI+P 
Sbjct: 507 NMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPG 566

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVF 484
           E T VS + AC  +  L+ G+ +H     +G ++ + +LG T+I+MY K G   +A  VF
Sbjct: 567 EVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVF 626

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               EK + SWN+LI+ +A NG A ++L    EM   G  P+  T V +L    H GL++
Sbjct: 627 DQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLE 686

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SPDVATWGALLG 603
            G  HF S IQ+H LEP+S    C+VDLL R G L  AEELI + P    D   W  LL 
Sbjct: 687 RGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLA 746

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           ACK +GD + G R   ++ EL+P H G  V+L+N++AS GRW D   +R MM R  V K 
Sbjct: 747 ACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKE 806

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PGCS IE +G +HEF++G+  HP+I EI   L+++  +++  GY PDT  V  D+++ +K
Sbjct: 807 PGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDK 866

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L RHSE+LAI FGL++  P   IR++KNLR+C+DCH A K IS    REIVVRD  R
Sbjct: 867 EEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSR 926

Query: 784 FHHFKHGSCSCMDFW 798
           FHHFKHG CSC DFW
Sbjct: 927 FHHFKHGQCSCGDFW 941



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 151/636 (23%), Positives = 279/636 (43%), Gaps = 114/636 (17%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  + + N F +  MM AY Q    ++A+ L+  M       D   + +   A A    
Sbjct: 14  VFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGE 73

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ IH  V+ +G  S++ ++N+L+NMY  C D+  A K+FD   + D+VSW ++LA 
Sbjct: 74  LDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAV 133

Query: 207 Y---------------VNADNVEEAKF------------------------IYNKMPERN 227
           Y               ++A+ V+  +                         I N+  E +
Sbjct: 134 YAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPD 193

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
            I  N+++ ++G  G+  +   +F  M +  ++ W+ +I+   QN  YEE L++F  M  
Sbjct: 194 GILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDL 253

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  +EV  +S++  C NL  VK G  + A  ++        L  +LI +Y  CG +  
Sbjct: 254 EGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDR 313

Query: 348 AEKLFDAGHNLDLISWNSMISG----------------------------YLK----CGS 375
           A+ L +  +  D+++WN+M++                             YL     C +
Sbjct: 314 AKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACAN 373

Query: 376 VEK--------ARALFDAMIEKDVVSWSTMISGYAQHDQ--------------------- 406
           +E         AR L   +++++V   +++I+ Y +  Q                     
Sbjct: 374 LEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNA 433

Query: 407 ----------FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
                     F + L LF  M+  G+R +E TL+S++ AC  L  L   + IHA     G
Sbjct: 434 VINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 493

Query: 457 LKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM--NGLADKSLE 513
              NS  +G ++++MY + G + +A + F   EEKG+ +W+ ++  +A   +G   ++ +
Sbjct: 494 FGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFK 553

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
            F EM+  G+ P E+TFV  L AC  M  ++ G            +E +      ++++ 
Sbjct: 554 FFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMY 613

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           G+ G   +A+ + + MP    + +W +L+ A   +G
Sbjct: 614 GKCGSPSDAKLVFDQMP-EKCLISWNSLIVAYAHNG 648



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 184/375 (49%), Gaps = 33/375 (8%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+   V +A  +F  +  K++ SW+ +++ Y QN  Y EAL LF  M       D+VV
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
            V  L ACA    +  G  +H+  V  G+   I + N+L++MY  C ++  AEK+FD   
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             D++SW                               + M++ YAQ+  +S+ L     
Sbjct: 121 LRDVVSW-------------------------------TAMLAVYAQNGCWSQALECLSR 149

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M   G++P++ T V+++  C  L  LD G+ IH  I   GL+ + ILG  L+ MY   G 
Sbjct: 150 MDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGS 209

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
            D+   VF    +  V  W  +I G + NG  ++ L +F +M   GV  NE+T++ ++  
Sbjct: 210 FDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEV 269

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           CR++  V EG    ++ I E     ++     ++ L G+ G+L  A+ L+E M    DV 
Sbjct: 270 CRNLDAVKEGE-MIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHM-YQRDVV 327

Query: 597 TWGALLGACKKHGDH 611
            W A++ AC ++GD+
Sbjct: 328 AWNAMVTACAQNGDN 342



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 2/252 (0%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y KC  V  A  +FD +  K+V SW+ M++ Y+Q+  + E L LF  MQ  G RPD+   
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           V  + AC     LD G+ IH+ +  +GL  N I+  +L++MY K   V  A +VF G   
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V SW A++  +A NG   ++LE  S M   GV PN++TFV ++  C  + L+D G + 
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + +I E  LEP+      +V + G  G   + + +   M  S  V  W  ++  C ++G
Sbjct: 182 HHRIINEG-LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQS-SVLLWTTMIAGCSQNG 239

Query: 610 DHEMGERVGRKL 621
            +E G  V RK+
Sbjct: 240 QYEEGLLVFRKM 251


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/795 (33%), Positives = 417/795 (52%), Gaps = 83/795 (10%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I   +I  GL+ D F  + L+          E   + K+F F+   N   +N+M+ A+ +
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDE---AMKVFDFMPETNLVSWNSMICAFSE 224

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-----IHDHVLKAGFD 163
               + +  L   ML    G +     ++   + L +   EG++     IH   +K G  
Sbjct: 225 NGFSRDSFDLLMEML----GEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLS 280

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA------- 216
            +V VNN ++ MY+ CG L+ A+  F ++   ++VSWN++++ +    +V EA       
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 217 -----------KFIYNKMPE----------------------RNIIASNSMIVLFGRKGN 243
                        I N +P                       +++  SN+ I+ + + G 
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGA 400

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A ++F  +  K + SW+ALI  + QN    +AL L   M       D   + S+L A
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA+L  ++ G  +H   ++ G+E                                D    
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLET-------------------------------DFFVG 489

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            S++S Y+ CG    AR LFD M +K++VSW+ MISGY+Q+    E+L+LF +    GI+
Sbjct: 490 TSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQ 549

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
             E  +VSV  AC+ L AL  GK  H Y+ K     ++ +G ++IDMY K GC+  + +V
Sbjct: 550 SHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKV 609

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F G ++K V+SWNA+I+   ++G   +++E++  MKK G  P+  T++G+L AC H GLV
Sbjct: 610 FDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLV 669

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           +EG ++F  M   + +EP  +HY C++D+L RAG L +A  L+  MP   D   W +LL 
Sbjct: 670 EEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLR 729

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           +C+  G  E+GE+V +KL+EL+PD    +VLLSN++A  G+WD V  VR MM   G+ K 
Sbjct: 730 SCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKD 789

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
            GCS IE  G ++ F+ GD   P+  EI  +   + +++   GY P+T  V  ++ +EEK
Sbjct: 790 AGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEK 849

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
              L  HSEKLAI+FGL+  +    +RI KNLRIC DCH AAK IS+A +REIVVRD  R
Sbjct: 850 IDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKR 909

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF+ G CSC D+W
Sbjct: 910 FHHFRDGLCSCCDYW 924



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/573 (26%), Positives = 273/573 (47%), Gaps = 82/573 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRL 145
           +F  +E+ N   +N ++  Y +  +    + ++  L+ + +   DN+T+P + +A    L
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  G++IH  V+K G   DV+V N L+ MY  CG +  A K+FD  P  +LVSWNS++ 
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMIC 220

Query: 206 GYV-NADNVEEAKFIYNKMPERN------------------------------------- 227
            +  N  + +    +   + E                                       
Sbjct: 221 AFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLS 280

Query: 228 --IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF--M 283
             ++ +N+M+ ++ + G + EA   F +   K++VSW+ +IS +       EA  L   M
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            +    +  +EV +++VL AC +   +++   +H  + +   + ++ L NA I  Y+ CG
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCG 399

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            + +AEK+F    +  + SWN++I G+ + G   KA                        
Sbjct: 400 ALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKA------------------------ 435

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
                  L L  +M + G +PD  T+ S++ AC HL +L  GK IH Y+ +NGL+ +  +
Sbjct: 436 -------LHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFV 488

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT+L+  Y+  G   +A  +F   ++K + SWNA+I G++ NGL  +SL +F +    G+
Sbjct: 489 GTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGI 548

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEA 582
             +EI  V V GAC  +  +  G      +++   L+      GC ++D+  ++G +KE+
Sbjct: 549 QSHEIAIVSVFGACSQLSALRLGKEAHGYVLKA--LQTEDAFVGCSIIDMYAKSGCIKES 606

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
            ++ + +    +VA+W A++ A   HG H  G+
Sbjct: 607 RKVFDGLK-DKNVASWNAIIVA---HGIHGHGK 635



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 244/518 (47%), Gaps = 78/518 (15%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           LL QA   +  +  G+ +H  V  +  + +D  +N  LI MYA+CG    +R +FD    
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107

Query: 195 LDLVSWNSILAGY-----------VNADNVEEAKFIYNKMPERNIIAS------------ 231
            +L+ WN++++GY           V  D V +  F  +     ++I +            
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEV 167

Query: 232 -----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                            N+++ ++G+ G V EA ++F  MP+ +LVSW+++I  + +N  
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 275 YEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             ++  L M M+ +  ++ D V VV++L  CA    V  G  +H LAVK+G+   + + N
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           A+++MYS CG +  A+  F   +N +++SWN+MIS +                +E DV  
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAF---------------SLEGDV-- 330

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHLVALDQGKWIHAY 451
                         +E  +L  EMQ  G  ++ +E T+++V+ AC   + L   K +H Y
Sbjct: 331 --------------NEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGY 376

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
             ++  + +  L    I  Y K G +++A +VFHG  +K VSSWNALI G A NG   K+
Sbjct: 377 SFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKA 435

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L +  +M  SG  P+  T   +L AC H+  +  G +  +  +  + LE +      ++ 
Sbjct: 436 LHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYG-KEIHGYVLRNGLETDFFVGTSLLS 494

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
                G    A  L + M    ++ +W A++    ++G
Sbjct: 495 HYIHCGKASSARVLFDRMK-DKNLVSWNAMISGYSQNG 531



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 187/402 (46%), Gaps = 45/402 (11%)

Query: 217 KFIYNKMPERNIIASNS-MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           KF+ +    RN    N+ +I ++   G+  ++  +F  M  K+L+ W+AL+S Y +N +Y
Sbjct: 67  KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLY 126

Query: 276 EEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            + + +FM+++ D     D     SV+ AC  +  V+ G  +H + +K+G+   + + NA
Sbjct: 127 GDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNA 186

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY  CG +  A K+FD     +L+SWNSMI  + + G    +R  FD          
Sbjct: 187 LVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF---SRDSFD---------- 233

Query: 395 STMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                             L MEM    G+ PD  T+V+++  C     +D G  IH    
Sbjct: 234 ------------------LLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV 275

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K GL    ++   ++ MY K G ++ A   F     K V SWN +I  F++ G  +++  
Sbjct: 276 KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFN 335

Query: 514 MFSEMKKSG--VTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
           +  EM+  G  +  NE+T + VL AC     +  + E H +      +H    N+     
Sbjct: 336 LLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNA----- 390

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            +    + G L  AE++   +     V++W AL+G   ++GD
Sbjct: 391 FILAYAKCGALNSAEKVFHGIG-DKTVSSWNALIGGHAQNGD 431



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 150/296 (50%), Gaps = 16/296 (5%)

Query: 328 YINLQ--NALIHMYSSCG---EITTAEKLF----DAGH-NLDLISWNSMISGYLKCGSVE 377
           +I+LQ   A+  +  +CG   +I T  +L     D+ H   D +    +I  Y  CGS  
Sbjct: 37  FISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPL 96

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISAC 436
            +R +FD M  K+++ W+ ++SGY ++  + + + +FM++      +PD  T  SVI AC
Sbjct: 97  DSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC 156

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
             ++ +  G+ IH  + K GL ++  +G  L+ MY K G VD A++VF    E  + SWN
Sbjct: 157 GGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWN 216

Query: 497 ALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           ++I  F+ NG +  S ++  EM  + G+ P+ +T V +L  C   G VD G    + +  
Sbjct: 217 SMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG-MGIHGLAV 275

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAE-ELIESMPMSPDVATWGALLGACKKHGD 610
           +  L         MV +  + G L EA+   +++   + +V +W  ++ A    GD
Sbjct: 276 KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKN--NNKNVVSWNTMISAFSLEGD 329


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/829 (33%), Positives = 441/829 (53%), Gaps = 69/829 (8%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIAD-TFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           +  T   +C+S         Q+++ GL  D T   S  + F++   P   +S   ++   
Sbjct: 50  LTSTLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNS---PAKALSVLRRLHP- 105

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
             S   F +N ++R  +     +  + LY+ M       D+YT+P + +A     S   G
Sbjct: 106 -SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 164

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE---SPVLDLVSWNSILAGY 207
             +H  V  +GF+ +V+V N L++MY  CG    AR++FDE     V DLVSWNSI+A Y
Sbjct: 165 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 208 VNADNVEEAKFIYNKMPE----------------------------------------RN 227
           +   +   A  ++ +M E                                         +
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 284

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N+++ ++ + G + EA ++F+ M  KD+VSW+A+++ Y Q   +++AL LF  + +
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 344

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            ++ ++ V   +V++  A   +      V    +  G E  +    +L+   +S G +  
Sbjct: 345 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLH 404

Query: 348 AEKLF-------------DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD--VV 392
            ++               D G +L +I  N++I  Y KC S + ARA+FD +  KD  VV
Sbjct: 405 GKETHCHAIKWILNLDENDPGDDLMVI--NALIDMYSKCKSPKAARAMFDLIPPKDRSVV 462

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           +W+ +I G AQH + +E L LF +M    + + P+  T+   + AC  L AL  G+ IHA
Sbjct: 463 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 522

Query: 451 YIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           Y+ +N  +   + +   LIDMY K G VD A  VF    ++   SW +L+ G+ M+G  +
Sbjct: 523 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 582

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++L++F EM+K  + P+ +TFV VL AC H G+VD+G  +FN M ++  + P ++HY CM
Sbjct: 583 EALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 642

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VDLL RAG L EA ELI  MPM P  A W ALL AC+ + + E+GE    +L+EL+  +D
Sbjct: 643 VDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGND 702

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G + LLSNI+A+   W DV  +R +M   G+ K PGCS ++       F AGD +HP   
Sbjct: 703 GSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQ 762

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           +I ++L ++ +++K  GY PD      D+D EEK   L  HSEKLA+A+G++T +P  PI
Sbjct: 763 QIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPI 822

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           RI KNLR C DCH+A  +IS   + EI+VRD  RFHHFK+GSCSC  +W
Sbjct: 823 RITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 393/721 (54%), Gaps = 80/721 (11%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           M+ ++V  D  T+ L+   +    S+  G+ +H   LK G D  + V+N+LINMY     
Sbjct: 306 MVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 365

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY--------------------- 220
              AR +FD     DL+SWNS++AG        EA  ++                     
Sbjct: 366 FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425

Query: 221 -NKMPE------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
            + +PE                   +   S ++I  + R   + EA  LF E    DLV+
Sbjct: 426 ASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVA 484

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+A+++ Y Q+    + L LF  M       D+  + +V   C  L  +  G  VHA A+
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K                               +G++LDL   + ++  Y+KCG +  A+ 
Sbjct: 545 K-------------------------------SGYDLDLWVSSGILDMYVKCGDMSAAQF 573

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
            FD++   D V+W+TMISG  ++ +      +F +M+  G+ PDE T+ ++  A + L A
Sbjct: 574 AFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA 633

Query: 442 LDQGKWIHAYIRKNGLKIN----SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           L+QG+ IHA    N LK+N      +GT+L+DMY K G +D+A  +F   E   +++WNA
Sbjct: 634 LEQGRQIHA----NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 689

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +++G A +G   ++L++F +MK  G+ P+++TF+GVL AC H GLV E ++H  SM  ++
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            ++P  +HY C+ D LGRAG++K+AE LIESM M    + +  LL AC+  GD E G+RV
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
             KL+EL+P     +VLLSN++A+  +WD++   R MM    V K PG S IE    IH 
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F+  DR++ Q   I   + +M + +K EGY P+T     D+++EEKE  L+ HSEKLA+A
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL++  P  PIR++KNLR+C DCH A K+I++ ++REIV+RD +RFH FK G CSC D+
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989

Query: 798 W 798
           W
Sbjct: 990 W 990



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/564 (24%), Positives = 263/564 (46%), Gaps = 53/564 (9%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQ------RNVPQQAICLYKLMLNNNVGVDNYTY 134
           ++Y+ ++F  +   +   +N+++ AY Q       N+ QQA  L++++  + V     T 
Sbjct: 90  LTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENI-QQAFLLFRILRQDVVYTSRMTL 148

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
             + +       V+  +  H +  K G D D +V   L+N+Y   G +   + LF+E P 
Sbjct: 149 SPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPY 208

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR-KGNVAEACRLFKE 253
            D+V WN +L  Y+     EEA  + +      +  +   + L  R  G+ ++A ++   
Sbjct: 209 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSF 268

Query: 254 MPKKDLVSWSALI------SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
               D  S S +I      S Y  +  Y   L  F +M++  V  D+V  + +L+    +
Sbjct: 269 ANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKV 328

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G  VH +A+K+G++  + + N+LI+MY          KL   G            
Sbjct: 329 DSLALGQQVHCMALKLGLDLMLTVSNSLINMYC---------KLRKFGF----------- 368

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                      AR +FD M E+D++SW+++I+G AQ+    E + LFM++   G++PD+ 
Sbjct: 369 -----------ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY 417

Query: 428 TLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           T+ SV+ A + L   L   K +H +  K     +S + T LID Y +  C+  A E+   
Sbjct: 418 TMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA-EILFE 476

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
                + +WNA++ G+  +    K+L++F+ M K G   ++ T   V   C  +  +++G
Sbjct: 477 RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQG 536

Query: 547 HR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
            + H  ++   + L+        ++D+  + G +  A+   +S+P+  DVA W  ++  C
Sbjct: 537 KQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVA-WTTMISGC 593

Query: 606 KKHGDHEMGERV--GRKLVELQPD 627
            ++G+ E    V    +L+ + PD
Sbjct: 594 IENGEEERAFHVFSQMRLMGVLPD 617



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 48/300 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N MM  Y Q +   + + L+ LM       D++T   + +      ++ +GK +H + +
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K+G+D D++V++ +++MY  CGD+SAA+  FD  PV D V+W ++++G +     E A  
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFH 604

Query: 219 IYNKM------PERNIIAS---------------------------------NSMIVLFG 239
           ++++M      P+   IA+                                  S++ ++ 
Sbjct: 605 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYA 664

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A  LFK +   ++ +W+A++    Q+   +E L LF  M    +  D+V  + 
Sbjct: 665 KCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIG 724

Query: 300 VLSACANLTVV----KAGTSVHA-LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           VLSAC++  +V    K   S+H    +K  IE Y  L +AL       G +  AE L ++
Sbjct: 725 VLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADAL----GRAGLVKQAENLIES 780



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 88  FAF--LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           FAF  +  P+   + TM+   I+    ++A  ++  M    V  D +T   LA+AS+   
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLT 632

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ +G+ IH + LK    +D +V  +L++MYA CG +  A  LF    ++++ +WN++L 
Sbjct: 633 ALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLV 692

Query: 206 GYVNADNVEEAKFIYNKMPERNI 228
           G       +E   ++ +M    I
Sbjct: 693 GLAQHGEGKETLQLFKQMKSLGI 715


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 376/614 (61%), Gaps = 26/614 (4%)

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN---SMIVLF----GRKGNVAEACRL 250
           +S N +++      ++ E + I+ +M + N++      S ++ F    G  G +  A  +
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI---DHRVMVDEVVVVSVLSACANL 307
           F  +   +   + ALI  +       E+L+L+  M+   ++   V E  + SVL AC  L
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV-EFSIPSVLKACGKL 122

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
                G  VH   +K  +     + N+++ MY   GEI  A ++FD   N D++SWNSMI
Sbjct: 123 LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMI 182

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GYLK G +E A  LFD M E+D+VS + MI GY +     E LSL       G+RPD  
Sbjct: 183 AGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK-----EMLSL-------GLRPDGP 230

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMKLGCVDNALEVFHG 486
            +VSV+SA   L  +++GKW+HAY+  N ++++S  +G+ LIDMY K G ++NA  VF  
Sbjct: 231 AIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRS 290

Query: 487 -TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
            +  + +  WN++I G A++GLA ++L++F EM++  + PNEITF+G+L  C H GLV+E
Sbjct: 291 ISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 350

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F SM +++++ P  +HYGCM+DL GRAG L++A  +I++MP   D+  W A+L A 
Sbjct: 351 GQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSAS 410

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
            KHG  E+G+    + +EL PD    +VLLSNI+A  GRWDDV ++R MM +RGV KI G
Sbjct: 411 MKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAG 470

Query: 666 CSMIEANGIIHEFLAGDRTHPQIN-EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           CS +  NG +HEFL G       + ++   + E+  +LKL+GY PD  +V  DI+ E KE
Sbjct: 471 CSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKE 530

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
           + L  HSEK+AIAFGLI I+   PI I+KNLR+C DCH   K +S+ ++R+I++RD++RF
Sbjct: 531 SLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRF 590

Query: 785 HHFKHGSCSCMDFW 798
           HHF++G CSC ++W
Sbjct: 591 HHFENGCCSCNEYW 604



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 224/470 (47%), Gaps = 82/470 (17%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KC+S  +  QI +QMI T L+   F  SRLI F +       + Y+  +F+ ++ PN 
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLML---NNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           FIF  +++ +   + P +++ LY  ML   N + GV+ ++ P + +A    L+  EG+ +
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE-FSIPSVLKACGKLLAFDEGRQV 131

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  VLK     D +V N+++ MY   G++  AR++FD  P  D+VSWNS++AGY+ A  +
Sbjct: 132 HGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEI 191

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
           E A  ++++MPER++++ N+MI  +G++                                
Sbjct: 192 ELASELFDEMPERDLVSCNAMIDGYGKE-------------------------------- 219

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQ 332
                      M+   +  D   +VSVLSA A+L  V+ G  +HA      IE     + 
Sbjct: 220 -----------MLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIG 268

Query: 333 NALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           +ALI MYS CG I  A  +F +  H  ++  WNSM                         
Sbjct: 269 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSM------------------------- 303

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                 ISG A H    E L +F+EM+   I P+E T + ++S C+H   +++G++    
Sbjct: 304 ------ISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFES 357

Query: 452 IRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           + +    +  I     +ID++ + G +++AL V      E  + +W A++
Sbjct: 358 MHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 407



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 124/291 (42%), Gaps = 65/291 (22%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           K  +F +  Q+  Q++ T L  D F  + +++   D   F E+  + ++F  + + +   
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYID---FGEIELARRVFDRMPNRDVVS 177

Query: 99  FNTMMRAYIQRNVPQQAICLYKLM-----LNNNVGVDNYTYPLLA--------------Q 139
           +N+M+  Y++    + A  L+  M     ++ N  +D Y   +L+               
Sbjct: 178 WNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLS 237

Query: 140 ASALRLSVFEGKLIHDHVLKAGFD-SDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDL 197
           A A    V EGK +H +V     + S  ++ + LI+MY+ CG +  A  +F   S   ++
Sbjct: 238 AIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNI 297

Query: 198 VSWNSILAG-------------YVNADN----------------------VEEAKFIYNK 222
             WNS+++G             +V  +                       VEE +F +  
Sbjct: 298 GDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFES 357

Query: 223 MPERNIIAS-----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
           M E+  I         MI LFGR G + +A  + + MP + DL++W A++S
Sbjct: 358 MHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILS 408


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/482 (45%), Positives = 317/482 (65%), Gaps = 6/482 (1%)

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           K G   +  + N+L+ +Y S G +  A + L+  G  LD++SWN+M+SGY K G +  AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +F  M E+++VSWS M+    +  +F E L +F  M     RPD   LVSV+ AC HL 
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 441 ALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           A+++G+W+H Y+      G + N +L T L+DMY K GC+++A +VF G   + V  WNA
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNA 285

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G AMNG  +++LE+F  M + G  PNE TF+ VL AC H G VDEG R F SM Q++
Sbjct: 286 MIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDY 344

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            ++P  +HYGC+ DLLGRAG ++EAE L+  MPM P  + WGAL+ +C+ H D  +GERV
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERV 404

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
           G++L+EL+P   G +V+L N++A  GRW++   +R MM  RG  K  G S IE NG++HE
Sbjct: 405 GKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHE 464

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAI 736
           F++GD  HP   +I  +L+++ ++L+L GY  DT +V  D+D EE K   L  HSE+LA+
Sbjct: 465 FISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLAL 524

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AFG++ I    PIRI+KNLR+C DCH  +K +S+ ++REI+VRDRHRFH F+ G CSC D
Sbjct: 525 AFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCND 584

Query: 797 FW 798
           +W
Sbjct: 585 YW 586



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 155/347 (44%), Gaps = 67/347 (19%)

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARK-LFDESPVLDLVSWNSILAGYVNADNVEEA 216
            K G  +   V N+L+ +Y   G L  AR+ L+     LD+VSWN++++G          
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSG---------- 154

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                                +G+ G++  A  +F  MP+++LVSWSA++    +   + 
Sbjct: 155 ---------------------YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFG 193

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL---AVKIGIECYINLQN 333
           EAL +F  M+      D VV+VSVL ACA+L  V+ G  VH         G    + L+ 
Sbjct: 194 EALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLET 253

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MY  CG +  A ++FD  H  D++ WN+MI G    G  E+A  LF  M++K    
Sbjct: 254 ALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQK---- 309

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                      G  P+E+T ++V+ ACTH   +D+GK +   ++
Sbjct: 310 ---------------------------GFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ 342

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
             G+K        L D+  + G V+ A  +      E   S W AL+
Sbjct: 343 DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 46/312 (14%)

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
            G   DV   NT+++ Y   GDL AAR++F   P  +LVSW++++   V A    EA ++
Sbjct: 139 GGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWV 198

Query: 220 YNKM------------------------PER------------------NIIASNSMIVL 237
           +++M                         ER                  N++   +++ +
Sbjct: 199 FDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDM 258

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G + +A ++F  + ++D+V W+A+I     N   E AL LF  M+    M +E   
Sbjct: 259 YCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTF 318

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGH 356
           ++VL AC +   V  G  V       GI+        L  +    G +  AE  L D   
Sbjct: 319 IAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPM 378

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSL 413
                 W +++S       +     +   +IE    D   +  + + YA + ++ E  ++
Sbjct: 379 EPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTI 438

Query: 414 FMEMQHHGIRPD 425
              M+  G + +
Sbjct: 439 RQMMEDRGAKKE 450



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 13/222 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + ++FA +   N   ++ M+ A ++     +A+ ++  M+      D      + +
Sbjct: 160 DLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLK 219

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDS---DVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           A A   +V  G+ +H ++    F     ++ +   L++MY  CG +  A ++FD     D
Sbjct: 220 ACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRD 279

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFK 252
           +V WN+++ G       E A  ++ +M ++  + + S  +         G V E  R+FK
Sbjct: 280 VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFK 339

Query: 253 EM------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
            M      P+++     A +     N    EAL+L M M  H
Sbjct: 340 SMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPH 381


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/653 (37%), Positives = 370/653 (56%), Gaps = 62/653 (9%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+F GK +H  ++ +G   D +++N L+N Y+  G   ++  LF                
Sbjct: 77  SLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF---------------- 120

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                          + MP RN+++ N +I  + + G++  A +LF EM ++++ +W+A+
Sbjct: 121 ---------------SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAM 165

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+   Q E  ++AL LF  M     + DE  + SVL  CA L  + AG  VHA  +K G 
Sbjct: 166 IAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGF 225

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           E    + ++L HMY                               +K GS+     L  +
Sbjct: 226 ELSSVVGSSLAHMY-------------------------------IKSGSLSDGEKLIKS 254

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  + VV+W+T+I+G AQ+    E L+ +  M+  G RPD+ T VSV+SAC+ L  L QG
Sbjct: 255 MPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQG 314

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + IHA + K G      + ++LI MY + GC++++++ F   E   V  W+++I  +  +
Sbjct: 315 QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFH 374

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  +++LE+F +M+   +  NE+TF+ +L AC H GL ++G  +F+ M+++++L+P  +H
Sbjct: 375 GRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEH 434

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y C+VDLLGRAG L+EAE +I SMP+ PD   W  LL ACK H + EM ER+  ++++L 
Sbjct: 435 YTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLD 494

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P     +VLLSNIHAS   W +V ++R  M  R V K PG S +E   ++H+F  GD++H
Sbjct: 495 PLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSH 554

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ  EID  L E+  +LK  GY P+   V  D+D EEKE  L  HSEK AIAF L+  S 
Sbjct: 555 PQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSE 614

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIR+MKNLR+C+DCH A K ISR  +REI+VRD  RFHHFK G CSC ++W
Sbjct: 615 NVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 220/460 (47%), Gaps = 58/460 (12%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D  +   +L +C  L  +  G  VH+L +  G      + N L++ YS  G+  ++  LF
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 +++S+N +I+GYL+ G +E A+ LFD M E+++ +W+ MI+G  Q +   + LS
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF EM   G  PDE TL SV+  C  L +L  G+ +HA + K G +++S++G++L  MY+
Sbjct: 181 LFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI 240

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G + +  ++      + V +WN LI G A NG  ++ L  ++ MK +G  P++ITFV 
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 533 VLGACRHMGLVDEGHRHFNSMIQE---------HRLEPNSKHYGCMVDLL---------- 573
           VL AC  +  + +G +    +I+            L       GC+ D +          
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFD 360

Query: 574 -----------GRAGMLKEAEEL---IESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
                      G  G  +EA EL   +E + M  +  T+ +LL AC   G  E G     
Sbjct: 361 VVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFD 420

Query: 620 KLV---ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
            +V   +L+P  + +  ++  +    GR   + E  GM     +  +P    ++ +GII 
Sbjct: 421 LMVKKYKLKPRIEHYTCVVDLL----GRAGRLEEAEGM-----IRSMP----VQPDGIIW 467

Query: 677 E-FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
           +  LA  + H +         EMA+++  E    D L+ A
Sbjct: 468 KTLLAACKLHKEA--------EMAERISEEIIKLDPLDAA 499



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 176/423 (41%), Gaps = 75/423 (17%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+ S +I +G   D F ++ L+ F + L  F     S  +F+ +   N   FN ++  Y+
Sbjct: 83  QVHSLIITSGGSKDKFISNHLLNFYSKLGQF---KSSLVLFSNMPRRNVMSFNILINGYL 139

Query: 108 Q----------------RNVP---------------QQAICLYKLMLNNNVGVDNYTYPL 136
           Q                RN+                +QA+ L+K M       D +T   
Sbjct: 140 QLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 199

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           + +  A   S+  G+ +H  +LK GF+    V ++L +MY   G LS   KL    P+  
Sbjct: 200 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 259

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------- 231
           +V+WN+++AG       EE    YN M      P++    S                   
Sbjct: 260 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 319

Query: 232 --------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                         +S+I ++ R G + ++ + F +    D+V WS++I+ Y  +   EE
Sbjct: 320 EVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEE 379

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALI 336
           AL LF  M D ++  +EV  +S+L AC++  + + GT    L V K  ++  I     ++
Sbjct: 380 ALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVV 439

Query: 337 HMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
            +    G +  AE +  +     D I W ++++        E A  + + +I+ D +  +
Sbjct: 440 DLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAA 499

Query: 396 TMI 398
           + +
Sbjct: 500 SYV 502


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/545 (41%), Positives = 331/545 (60%), Gaps = 30/545 (5%)

Query: 255 PKKDLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           P  D   ++ LI  Y Q  +    + + +  M+ + V  ++     VL  CA +  ++ G
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             VH   VK G E  +++ N LIHMY   GE                        G+   
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGE-----------------------DGF--- 178

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
              E A  +FD   + D V+WS MI+G+ +    S  + LF EMQ  G+ PDE T+VSV+
Sbjct: 179 ---EFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVL 235

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SAC  L AL+ GKW+ +Y+ K  +  +  L   LIDM+ K G VD A+++F   + + + 
Sbjct: 236 SACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIV 295

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SW ++I G AM+G    ++ +F EM ++G+TP+++ F+GVL AC H GLVD+G  +F SM
Sbjct: 296 SWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM 355

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            +   + P  +HYGCMVDLL R G +KEA E ++ MP  P+   W  ++ AC   G+ ++
Sbjct: 356 ERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKL 415

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE + ++L++ +P H+  +VLLSNI+A   +W+   +VR MM  RG+ K+PG +MIE N 
Sbjct: 416 GESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNN 475

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            ++EF+AGD++H Q  EI  M+DEM +++K  GY P T +V  DID+E+KE  L+RHSEK
Sbjct: 476 EMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEK 535

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LAIAF L+   P   IRI+KNLR+C DCH+A KFIS+ ++REIVVRDR+RFHHFK+G CS
Sbjct: 536 LAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCS 595

Query: 794 CMDFW 798
           C DFW
Sbjct: 596 CRDFW 600



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 171/331 (51%), Gaps = 50/331 (15%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF-IEMSYSFKIF 88
           L++L +H   C +  + TQI + ++ TGL  +    ++    S++L       S+ F   
Sbjct: 21  LTLLNSH---CNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPS 77

Query: 89  AFLESP----NGFIFNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
               +P    + F+FNT++RAY Q R+    +   Y+ ML   V  + +T+P + +  A 
Sbjct: 78  HTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAG 137

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD--LSAARKLFDESPVLDLVSWN 201
             S+  GK +H  V+K GF+ DV+V NTLI+MY   G+     A K+FD+SP +D V+W+
Sbjct: 138 IGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWS 197

Query: 202 SILAGYVN---------------------------------AD--NVEEAKFIYNKMPER 226
           +++AG+V                                  AD   +E  K++ + + ++
Sbjct: 198 AMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKK 257

Query: 227 NIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           NI  S    N++I +F + GNV +A +LF++M  + +VSW+++I+    +    +A+ LF
Sbjct: 258 NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLF 317

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
             M+++ +  D+V  + VLSAC++  +V  G
Sbjct: 318 DEMVENGITPDDVAFIGVLSACSHSGLVDKG 348



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 25/203 (12%)

Query: 423 RPDEATLVSVI-SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           R  E T+++++ S C  L  L Q   IHA+I K GL+ N ++ T        L  +  A 
Sbjct: 14  RLTEQTILTLLNSHCNTLSKLTQ---IHAFILKTGLQNNPLILTKFTSTSSNLNSIHYAT 70

Query: 482 EVFHG---TEEKGVSSWNALIIGFAMNGLAD------KSLEMFSEMKKSGVTPNEITFVG 532
                   T      S++A +    +   +        S   +  M + GVTPN+ TF  
Sbjct: 71  SFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPF 130

Query: 533 VLGACRHMGLVDEGHRHFNSMIQ------EHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           VL  C  +G +  G      +++       H L      Y C    LG  G  + AE++ 
Sbjct: 131 VLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCC----LGEDG-FEFAEKVF 185

Query: 587 ESMPMSPDVATWGALLGACKKHG 609
           +  P   D  TW A++    + G
Sbjct: 186 DDSP-KMDTVTWSAMIAGFVRLG 207


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/468 (48%), Positives = 308/468 (65%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L N ++  Y + GE+  A K+FD     DL+SWN+MI GY   G V  AR +FD   ++D
Sbjct: 118 LCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRD 177

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
             SWS+MIS YA+     E L L+ EM+  G+ PD  ++VSV+SAC+ + AL  G  +H 
Sbjct: 178 AFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHR 237

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++  N ++++  LGT L+DMY K G ++N+L+VFH    K V +W+++IIG A +GL   
Sbjct: 238 FVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHD 297

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +FSEM   G+ PNEITF+GVL AC H+GLV++G ++F+SM   H + P  +HYGCMV
Sbjct: 298 ALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMV 357

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG ++EA ELI SM   PD   W  LLGAC+ H + E+ E    KL  L P  DG
Sbjct: 358 DLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADG 417

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI+A    W+ V E+R  + R  + ++PG S IE    +HEF++GDR+HP+I E
Sbjct: 418 HYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEE 477

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  ML+EM  +L+  GY P T  V  DID++ K+  L  HSEKLAIAFGL+     + +R
Sbjct: 478 IYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLR 537

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR C DCH+A K IS A+DR+++VRDR+RFHHF  G CSC D+W
Sbjct: 538 ITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 171/339 (50%), Gaps = 35/339 (10%)

Query: 150 GKLIHDHVLKAGFDS-DVYVNNTLINMYA--VCGDLSAARKLFDESPVLDLVSWNSILAG 206
           G  +H   L++GF + D++V   L+ MYA    G+++ AR  FDE+P  D+   N +LA 
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           YV    V EA+ +++ M  R++++ N+MI  +  +G+V  A  +F     +D  SWS++I
Sbjct: 126 YVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMI 185

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y +    +EAL L+  M    V  D + +VSVLSAC+ +  +  G  VH       +E
Sbjct: 186 SAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE 245

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + L  AL+ MY+ CG+I  + K+F A    D+++W+SM                    
Sbjct: 246 VDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSM-------------------- 285

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG- 445
                      I G A H    + LSLF EM   G++P+E T + V+ ACTH+  ++ G 
Sbjct: 286 -----------IIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGK 334

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           K+  +    +G+         ++D+  + G V+ A+E+ 
Sbjct: 335 KYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELI 373



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 44/238 (18%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF      + F +++M+ AY +    ++A+ L++ M    V  D  +   +  A +   
Sbjct: 168 EIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMG 227

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  G  +H  V     + D+ +   L++MYA CGD+  + K+F   PV D+++W+S++ 
Sbjct: 228 ALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMII 287

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
           G  N     +A  ++++M  + +  +                                  
Sbjct: 288 GLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVV 347

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMYEEAL 279
                   M+ L GR G+V EA  L + M  K D + W  L+     ++  E+ EEA+
Sbjct: 348 PRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAM 405


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/581 (40%), Positives = 348/581 (59%), Gaps = 7/581 (1%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN---EMYEEALVL 281
           + N   +  M+ ++   G++  A  +F  +     + ++++I  Y ++         L  
Sbjct: 109 QPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEA 168

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           +  M    ++ D   +  VL +CA+L+ V  G  VH   +++G+E    +  +LI MY  
Sbjct: 169 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 228

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG I  A KLFD     D+ SWN++I+GY+K G +  A  LF+ M  +++VSW+ MISGY
Sbjct: 229 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 288

Query: 402 AQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Q+    + L LF EM   G  ++P+  T+VSV+ AC    AL++G+ IH +    GL +
Sbjct: 289 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 348

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS--SWNALIIGFAMNGLADKSLEMFSE 517
           NS + T L  MY K   +  A   F    + G +  +WN +I  +A +G   +++ +F  
Sbjct: 349 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 408

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M ++GV P+ +TF+G+L  C H GL+D G  HFN M   H +EP  +HY C+VDLLGRAG
Sbjct: 409 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 468

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L EA+ELI  MPM    + WGALL AC+ H + E+ E   R+L  L+PD+ G +VLLSN
Sbjct: 469 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 528

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++A  G W++V ++R ++  +G+ K PGCS IE NG  H F+  D++HPQ  EI   L+ 
Sbjct: 529 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEA 588

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           + +K+K+ GY PDT  V  DI +EEKE  L  HSEKLAIAFGL+   P   +R+ KNLRI
Sbjct: 589 LPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRI 648

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH A KFIS+ ++REI+VRD +RFH FK GSCSC D+W
Sbjct: 649 CGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 145/595 (24%), Positives = 250/595 (42%), Gaps = 142/595 (23%)

Query: 25  KPTINLSI------LETHLQKCQSFKQFTQILS-------------QMILTGLIADTFAA 65
           KP++NL +      +  H     S+    Q L+             Q++L GL  + F A
Sbjct: 56  KPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLA 115

Query: 66  SRLIKF---STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL---Y 119
           ++++     S DL        +  +F  +++P+  ++N+++RAY +             Y
Sbjct: 116 AKMVAMYASSGDL------DSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAY 169

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
             M    +  DN+T P + ++ A    V  G+ +H   L+ G + D YV  +LI+MY  C
Sbjct: 170 ARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKC 229

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG 239
           G +  ARKLFD                               KM  R++ + N++I  + 
Sbjct: 230 GVIGDARKLFD-------------------------------KMIVRDMASWNALIAGYM 258

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVV 297
           ++G +  A  LF+ M  +++VSW+A+IS Y QN   E+AL LF  M+     +  + V +
Sbjct: 259 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTI 318

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AG 355
           VSVL ACA    ++ G  +H  A  IG+    ++Q AL  MY+ C  +  A   FD  A 
Sbjct: 319 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQ 378

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
           +  +LI+WN+MI+ Y   G   +A ++F+ M+                            
Sbjct: 379 NGKNLIAWNTMITAYASHGCGVEAVSIFENMLRA-------------------------- 412

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
                G++PD  T + ++S C+H   +D G                      ++ +  +G
Sbjct: 413 -----GVQPDAVTFMGLLSGCSHSGLIDAG----------------------LNHFNDMG 445

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +       H  E + V  +  ++      G   ++ E+ S+M    +      +  +L 
Sbjct: 446 TI-------HSVEPR-VEHYACVVDLLGRAGRLVEAKELISQMP---MQAGPSVWGALLA 494

Query: 536 ACRHMGLVDEGHRHFNSMIQEHR----LEP-NSKHYGCMVDLLGRAGMLKEAEEL 585
           ACR        HR+        R    LEP NS +Y  + +L   AGM +E ++L
Sbjct: 495 ACR-------SHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKL 542



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 5/195 (2%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P  ++   +    T    +  G+  HA I  +GL+ N+ L   ++ MY   G +D+A+ V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 484 FHGTEEKGVSSWNALIIGFAMNG---LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           F   +      +N++I  +  +G        LE ++ M   G+  +  T   VL +C  +
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
             V  G R  +       LE +      ++D+  + G++ +A +L + M +  D+A+W A
Sbjct: 195 SRVCMG-RCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM-IVRDMASWNA 252

Query: 601 LLGACKKHGDHEMGE 615
           L+    K G+  + E
Sbjct: 253 LIAGYMKEGEIGVAE 267


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/551 (42%), Positives = 333/551 (60%), Gaps = 25/551 (4%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +P+++  S++ L++    +   E A       I  R M                 
Sbjct: 111 RLFPRLPRRNPHSFTFLLASLSNHLDTEPAAA---GSIASRFM----------------- 150

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSMI 367
               GT VHALAVK G    + ++NA IH Y  CG++    K+FD    + D+++WN+++
Sbjct: 151 ----GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVL 206

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GY++ G V  AR +FD M  +D VSWST+I GY +  +    L +F  M   G++ +EA
Sbjct: 207 AGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEA 266

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +V+ +SA   L  L+QGK++H  +++ G+ ++  LG  LIDMY K G V  A EVF   
Sbjct: 267 AIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAM 326

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +WN++I G A +GL   ++++F +    G  P  ITFVGVL AC   GLVDEG 
Sbjct: 327 PRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGR 386

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R+F  M +++ +E   +HYGCMVDLL RAG+++EA ELIE M + PD   WG +L ACK+
Sbjct: 387 RYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKR 446

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG  ++G  VG KL+EL P HDG++VLL++I+A   +WD+V +VR +M  RG  K  G S
Sbjct: 447 HGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWS 506

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
           ++EA+GI+H+FL GD  H     I NML  + ++L   GY PD   V  DI  EEK   +
Sbjct: 507 LMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAI 566

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSE+LAIA+G I +   +PIRI+KNL +C DCH  +K +++ F REIVVRD  RFHH 
Sbjct: 567 KVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHM 626

Query: 788 KHGSCSCMDFW 798
           K G CSC D+W
Sbjct: 627 KDGKCSCHDYW 637



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHV 157
           ++T++  Y++   P+ A+ ++K M+   V   N    + A ++A +L + E GK +H+ V
Sbjct: 233 WSTVIGGYVKEGEPEVALGVFKNMVAQGVKA-NEAAIVTALSAAAQLGLLEQGKFVHEVV 291

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
            + G    V +   LI+MY+ CG ++AA+++FD  P  D+ +WNS++ G        +A 
Sbjct: 292 KRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAV 351

Query: 218 FIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMPKK-----DLVSWSALISC 268
            ++ K        ++   V       R G V E  R FK M +K     ++  +  ++  
Sbjct: 352 QLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL 411

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
             +  + +EA+ L   M   R+  D V+  ++LSAC    +V  G +V
Sbjct: 412 LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSACKRHGLVDLGITV 456


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/786 (34%), Positives = 416/786 (52%), Gaps = 99/786 (12%)

Query: 80   EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            +++ + ++F  +   +   +N+M+    +    + ++ L++LML+ NV   ++T   +A 
Sbjct: 382  DLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAH 441

Query: 140  A-SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            A S +R  V  GK +H + L+ G D   Y NN L+ MYA  G ++ A+ LF      DLV
Sbjct: 442  ACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLV 500

Query: 199  SWNSILAGYVNADNVEEA-KFIY-----NKMPERNIIAS-------------NSMIVLFG 239
            SWN++++     D  EEA  ++Y        P+   +AS                I  + 
Sbjct: 501  SWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYA 560

Query: 240  -RKGNVAEA-------------CR-------LFKEMPKKDLVSWSALISCYEQNEMYEEA 278
             R G++ E              C+       +F  + ++ +  W+AL++ Y +NE  ++A
Sbjct: 561  LRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQA 620

Query: 279  LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
            L LF+ MI +     +     SVL AC    V      +H   VK G      +QNAL+ 
Sbjct: 621  LRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMD 680

Query: 338  MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            MYS                               + G VE ++ +F  M ++D+VSW+TM
Sbjct: 681  MYS-------------------------------RMGRVEISKTIFGRMNKRDIVSWNTM 709

Query: 398  ISGYAQHDQFSETLSLFMEMQHH------------------GIRPDEATLVSVISACTHL 439
            I+G     ++ + L+L  EMQ                      +P+  TL++V+  C  L
Sbjct: 710  ITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAAL 769

Query: 440  VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
             AL +GK IHAY  K  L ++  +G+ L+DMY K GC++ A  VF     + V +WN LI
Sbjct: 770  AALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLI 829

Query: 500  IGFAMNGLADKSLEMFSEMKKSG------VTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            + + M+G  +++LE+F  M   G      + PNE+T++ +  AC H G+VDEG   F++M
Sbjct: 830  MAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTM 889

Query: 554  IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD-VATWGALLGACKKHGDHE 612
               H +EP   HY C+VDLLGR+G +KEA ELI +MP + + V  W +LLGAC+ H   E
Sbjct: 890  KASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVE 949

Query: 613  MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
             GE   + L  L+P+    +VL+SNI++S G WD  L VR  M   GV K PGCS IE  
Sbjct: 950  FGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHG 1009

Query: 673  GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
              +H+FL+GD +HPQ  E+   L+ ++++++ EGY PD   V  ++D EEKET L  HSE
Sbjct: 1010 DEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSE 1069

Query: 733  KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
            +LAIAFGL+   P   IR+ KNLR+CNDCH A K IS+  DREI++RD  RFHHF +G+C
Sbjct: 1070 RLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTC 1129

Query: 793  SCMDFW 798
            SC D+W
Sbjct: 1130 SCGDYW 1135



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 162/583 (27%), Positives = 258/583 (44%), Gaps = 98/583 (16%)

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
            SP+ +I   ++R+    +  + AI  Y  ML      DN+ +P + +A+A    +  GK
Sbjct: 293 RSPSQWI--DLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGK 350

Query: 152 LIHDHVLKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            IH HV K G    S V V N+L+NMY  CGDL+AAR++FD+ P  D VSWNS++A    
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 210 ADNVEEAKFIYNKMPERNI---------------------------------------IA 230
            +  E +  ++  M   N+                                         
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYT 470

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +N+++ ++ R G V +A  LF     KDLVSW+ +IS   QN+ +EEAL+    MI   V
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV 530

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTA 348
             D V + SVL AC+ L  ++ G  +H  A++ G  IE    +  AL+ MY +C +    
Sbjct: 531 RPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF-VGTALVDMYCNCKQPKKG 589

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
             +FD      +  WN++++GY        AR  FD                        
Sbjct: 590 RLVFDGVVRRTVAVWNALLAGY--------ARNEFD-----------------------D 618

Query: 409 ETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           + L LF+EM       P+  T  SV+ AC         + IH YI K G   +  +   L
Sbjct: 619 QALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNAL 678

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK------- 520
           +DMY ++G V+ +  +F    ++ + SWN +I G  + G  D +L +  EM++       
Sbjct: 679 MDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGS 738

Query: 521 ---------SGVT--PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
                     GV   PN +T + VL  C  +  + +G +  ++   + +L  +      +
Sbjct: 739 DTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG-KEIHAYAVKQKLAMDVAVGSAL 797

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           VD+  + G L  A  + + MP+  +V TW  L+ A   HG  E
Sbjct: 798 VDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGE 839



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 201/413 (48%), Gaps = 47/413 (11%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
           F +   P  ++  +NS++ ++G+ G++  A ++F ++P +D VSW+++I+   + E +E 
Sbjct: 357 FKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWEL 416

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIG-IECYINLQNAL 335
           +L LF  M+   V      +VSV  AC+++   V+ G  VHA  ++ G +  Y N  NAL
Sbjct: 417 SLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTN--NAL 474

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               + G V  A+ALF     KD+VSW+
Sbjct: 475 VTMYA-------------------------------RLGRVNDAKALFGVFDGKDLVSWN 503

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           T+IS  +Q+D+F E L     M   G+RPD  TL SV+ AC+ L  L  G+ IH Y  +N
Sbjct: 504 TVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN 563

Query: 456 GLKI-NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           G  I NS +GT L+DMY           VF G   + V+ WNAL+ G+A N   D++L +
Sbjct: 564 GDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRL 623

Query: 515 FSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           F EM  +S   PN  TF  VL AC    +  +     +  I +     +      ++D+ 
Sbjct: 624 FVEMISESEFCPNATTFASVLPACVRCKVFSD-KEGIHGYIVKRGFGKDKYVQNALMDMY 682

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGA---CKKHGD-----HEMGERVG 618
            R G ++ ++ +   M    D+ +W  ++     C ++ D     HEM  R G
Sbjct: 683 SRMGRVEISKTIFGRMNKR-DIVSWNTMITGCIVCGRYDDALNLLHEMQRRQG 734


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 354/580 (61%), Gaps = 14/580 (2%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           N+++  +   G   +A ++F E+P   KD V W+ L+ C+ ++ + +EAL++F+ M    
Sbjct: 54  NALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG 113

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  DEV +V +   CA L  V  G   H   VK+G+       NA++ MY+  G +  A 
Sbjct: 114 VKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEAR 173

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++F       ++SW  ++ G ++   V   R +FD M E++ V+W+ MI+GY       E
Sbjct: 174 RVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQE 233

Query: 410 TLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK-INSILGTTL 467
           + +L  EM     +  +  TL S+++AC+    L  G+W+HAY  K   K +N ++GT +
Sbjct: 234 SFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAM 293

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G +  A + F    ++ V SWNA++ G AM+GL   +L++F +M K    P++
Sbjct: 294 VDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDD 352

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF  VL AC H GLVD+G  +F ++   + + P  +HY CMVDLLGRAG L+EAE L+ 
Sbjct: 353 VTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVR 412

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP+ P+    G+LLG+C  HG  ++GE + ++LV+L P +  +H+LLSN++A  G+ + 
Sbjct: 413 EMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNR 472

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
              +R ++ +RG+ K+PG S I   G +H+F AGD++HP+  E+ NMLDEM  +L+L GY
Sbjct: 473 ANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGY 532

Query: 708 APDTLEVAFD---------IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           AP+T    F          ++QEEKE  LF HSEKLAI FGLI+  P  P+ I KNLRIC
Sbjct: 533 APNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRIC 592

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH+A K +S+ ++REIV+RDR+RFH FK GSCSC D+W
Sbjct: 593 QDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 142/363 (39%), Gaps = 73/363 (20%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKLFDA-GH 356
           +L +CA  + +  G  +HA  +  GI       L NAL+  Y+SCG    A K+FD   H
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           +                               KD V W+T++  + +H+   E L +F+E
Sbjct: 79  S------------------------------HKDTVDWTTLMGCFVRHNVSDEALLIFVE 108

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+  G++PDE TLV +   C  L  +  G   H  + K GL         ++DMY K G 
Sbjct: 109 MRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGL 168

Query: 477 VDNALEVFHGTEEKGVSSWNA-------------------------------LIIGFAMN 505
           +  A  VF+  + + V SW                                 +I G+  +
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228

Query: 506 GLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           GL  +S  +  EM     +  N +T   +L AC   G +  G       ++    E N  
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIM 288

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
               MVD+  + G +  A +  + MP   +V +W A+L     HG       +GR  +++
Sbjct: 289 VGTAMVDMYAKCGRIHIAFKFFKKMPQR-NVVSWNAMLSGLAMHG-------LGRAALDI 340

Query: 625 QPD 627
            P 
Sbjct: 341 FPQ 343



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 125/326 (38%), Gaps = 74/326 (22%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T+M  +++ NV  +A+ ++  M    V  D  T   L    A    V  G   H  ++
Sbjct: 86  WTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMV 145

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLF----------------------------- 189
           K G        N +++MYA  G +  AR++F                             
Sbjct: 146 KMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRV 205

Query: 190 --DESPVLDLVSWNSILAGYVNADNVEE-------------------------------- 215
             DE P  + V+W  ++AGY+++   +E                                
Sbjct: 206 VFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSG 265

Query: 216 ---------AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                    A  +  K  E NI+   +M+ ++ + G +  A + FK+MP++++VSW+A++
Sbjct: 266 DLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAML 325

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVKIGI 325
           S    + +   AL +F  M       D+V   SVLSAC++  +V  G      L    GI
Sbjct: 326 SGLAMHGLGRAALDIFPQMFK-EAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGI 384

Query: 326 ECYINLQNALIHMYSSCGEITTAEKL 351
              +     ++ +    G +  AE L
Sbjct: 385 TPKVEHYACMVDLLGRAGRLEEAEIL 410



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 17/231 (7%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY-TYPLLAQASALRL 145
           +F  +   N   +  M+  Y+   + Q++  L + M+ +     NY T   +  A +   
Sbjct: 206 VFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSG 265

Query: 146 SVFEGKLIHDHVLKAGFDS-DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +  G+ +H + LK      ++ V   +++MYA CG +  A K F + P  ++VSWN++L
Sbjct: 266 DLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAML 325

Query: 205 AGYVNADNVEEAKFIYNKM---PERNIIASNSMIVLFGRKGNVAEACRLFKEM------- 254
           +G         A  I+ +M    + + +   S++      G V + C  F  +       
Sbjct: 326 SGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGIT 385

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           PK +   ++ ++    +    EEA +L   M    +  +EVV+ S+L +C+
Sbjct: 386 PKVE--HYACMVDLLGRAGRLEEAEILVREM---PIRPNEVVLGSLLGSCS 431


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/666 (36%), Positives = 374/666 (56%), Gaps = 63/666 (9%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  L Q+      + +GK +H H+  +GF   +++ N L+ MYA C  L  ++KL     
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL----- 127

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
                                     +++MPER++ + N +I  + + G + EA  LF +
Sbjct: 128 --------------------------FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDK 161

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKA 312
           MP++D  SW+A+IS Y +++   EAL LF  M        ++  V S L+A A +  ++ 
Sbjct: 162 MPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRI 221

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H   ++ G++                                D + W+++   Y K
Sbjct: 222 GKEIHGYIMRTGLDS-------------------------------DEVVWSALSDMYGK 250

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           CGS+E+AR +FD M+++D+V+W+ MI  Y Q  +  E   LF ++   GIRP+E T   V
Sbjct: 251 CGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGV 310

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           ++AC +  + + GK +H Y+ + G    S   + L+ MY K G + +A  VF  T +  +
Sbjct: 311 LNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDL 370

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW +LI G+A NG  D+++  F  + KSG  P+ ITFVGVL AC H GLVD+G  +F+S
Sbjct: 371 FSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHS 430

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           + +++ L   + HY C++DLL R+G   EAE +I  M M PD   W +LLG C+ HG+ +
Sbjct: 431 IKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLK 490

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           + +R    L E++P++   +V L+NI+A+ G W +V ++R  M  RGVVK PG S I   
Sbjct: 491 LAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIK 550

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H FL GD +HP+  EI+  L +++K++K EG+ PDT  V  D++ E+KE  L  HSE
Sbjct: 551 RDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSE 610

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLA+AFG+I+     PI++ KNLR C DCHTA KFIS+  +R+I+VRD +RFH F+ G C
Sbjct: 611 KLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHC 670

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 671 SCRDYW 676



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 193/371 (52%), Gaps = 12/371 (3%)

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL-SACANLTVVKAGTSVHALAVKIGIECY 328
           +QN + E   +L      H++      V S L  +C    +++ G  VH      G    
Sbjct: 51  QQNRLKEALQIL------HQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPG 104

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + + N L+ MY+ C  +  ++KLFD     DL SWN +ISGY K G +++A++LFD M E
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKW 447
           +D  SW+ MISGY +HD+ +E L LF  M+     + ++ T+ S ++A   +  L  GK 
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IH YI + GL  + ++ + L DMY K G ++ A  +F    ++ + +W A+I  +  +G 
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             +  ++F+++ +SG+ PNE TF GVL AC +    + G +    M +    +P S    
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG-FDPFSFAAS 343

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQ 625
            +V +  + G +  AE + +  P  PD+ +W +L+    ++G  +   R    LV+   Q
Sbjct: 344 ALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402

Query: 626 PDHDGFHVLLS 636
           PDH  F  +LS
Sbjct: 403 PDHITFVGVLS 413



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 133/329 (40%), Gaps = 67/329 (20%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  M+  Y Q    ++   L+  +L + +  + +T+  +  A A + S   GK +H ++ 
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT 331

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + GFD   +  + L++MY+ CG++ +A ++F E+P  DL SW S++AGY           
Sbjct: 332 RVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGY----------- 380

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                                + G   EA R F                         E 
Sbjct: 381 --------------------AQNGQPDEAIRYF-------------------------EL 395

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIH 337
           LV      DH      +  V VLSACA+  +V  G    H++  + G+    +    +I 
Sbjct: 396 LVKSGTQPDH------ITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIID 449

Query: 338 MYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVS 393
           + +  G+   AE +        D   W S++ G    G+++ A+   +A+ E   ++  +
Sbjct: 450 LLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           + T+ + YA    +SE   +   M   G+
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGV 538


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/755 (34%), Positives = 401/755 (53%), Gaps = 68/755 (9%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           ++TG I++ F  + L+   +       +S + K+F  +   +   +N+++ +Y +   P+
Sbjct: 154 LVTGFISNVFVGNALVAMYSRCR---SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPK 210

Query: 114 QAICLYKLMLNN-NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
            A+ ++  M N      DN T   +    A   +   GK +H   + +    +++V N L
Sbjct: 211 VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCL 270

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232
           ++MYA CG +                               +EA  +++ M  +++++ N
Sbjct: 271 VDMYAKCGMM-------------------------------DEANTVFSNMSVKDVVSWN 299

Query: 233 SMIVLFGRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           +M+  + + G   +A RLF++M     K D+V+WSA IS Y Q  +  EAL +   M+  
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            +  +EV ++SVLS CA++  +  G  +H  A+K  I+   N                  
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN------------------ 401

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQ 406
                 GH  + +  N +I  Y KC  V+ ARA+FD++   E+DVV+W+ MI GY+QH  
Sbjct: 402 ------GHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455

Query: 407 FSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSIL 463
            ++ L L  EM  +    RP+  T+   + AC  L AL  GK IHAY +R     +   +
Sbjct: 456 ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFV 515

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              LIDMY K G + +A  VF     K   +W +L+ G+ M+G  +++L +F EM++ G 
Sbjct: 516 SNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGF 575

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             + +T + VL AC H G++D+G  +FN M     + P  +HY C+VDLLGRAG L  A 
Sbjct: 576 KLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAAL 635

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
            LIE MPM P    W A L  C+ HG  E+GE    K+ EL  +HDG + LLSN++A+ G
Sbjct: 636 RLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAG 695

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RW DV  +R +M  +GV K PGCS +E       F  GD+THP   EI  +L +  +++K
Sbjct: 696 RWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIK 755

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY P+T     D+D EEK+  LF HSEKLA+A+G++T      IRI KNLR+C DCHT
Sbjct: 756 DIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHT 815

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           A  ++SR  D +I++RD  RFHHFK+GSCSC  +W
Sbjct: 816 AFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 166/616 (26%), Positives = 287/616 (46%), Gaps = 94/616 (15%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA-F 90
           I    + KC++  Q   I  +++  G++      S LI   +  +    +S++  +   F
Sbjct: 30  ITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT-SHLI---STYISVGCLSHAVSLLRRF 85

Query: 91  LESPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
             S  G + +N+++R+Y       + + L+ LM + +   DNYT+P + +A         
Sbjct: 86  PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKA--------- 136

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
                                        CG++S+ R   + +  L LV+      G+++
Sbjct: 137 -----------------------------CGEISSVR-CGESAHALSLVT------GFIS 160

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                            N+   N+++ ++ R  ++++A ++F EM   D+VSW+++I  Y
Sbjct: 161 -----------------NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203

Query: 270 EQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            +    + AL +F  M +      D + +V+VL  CA+L     G  +H  AV   +   
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQN 263

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-- 386
           + + N L+ MY+ CG +  A  +F      D++SWN+M++GY + G  E A  LF+ M  
Sbjct: 264 MFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQE 323

Query: 387 --IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
             I+ DVV+WS  ISGYAQ     E L +  +M   GI+P+E TL+SV+S C  + AL  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 445 GKWIHAY-------IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSW 495
           GK IH Y       +RKNG    +++   LIDMY K   VD A  +F     +E+ V +W
Sbjct: 384 GKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTW 443

Query: 496 NALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNS 552
             +I G++ +G A+K+LE+ SEM  +     PN  T    L AC  +  +  G + H  +
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYA 503

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           +  +    P      C++D+  + G + +A  + ++M M+ +  TW +L+     HG  E
Sbjct: 504 LRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGE 561

Query: 613 MG-------ERVGRKL 621
                     R+G KL
Sbjct: 562 EALGIFDEMRRIGFKL 577


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/792 (33%), Positives = 421/792 (53%), Gaps = 79/792 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+  Q I  G + D    + L+      +    +    ++F  +   N   + +++  Y 
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDM---YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q  + +QA+ L+  M    +  + +T+  +    A   +V +G  +H  V+K+G DS ++
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEAKFIYNKMPE- 225
           V N+++NMY+    +S A+ +FD     + VSWNS++AG+V N  ++E  +  Y    E 
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 226 ----RNIIAS---------------------------------NSMIVLFGRKGNVAEAC 248
               + I A+                                  +++V + +   + +A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 249 RLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           +LF  M   +++VSW+A+IS Y QN   + A+ LF  M    V  +     ++L+A A +
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV 409

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
           +     + +HAL VK   E   ++  AL   YS  G+   A K+F+              
Sbjct: 410 S----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE-------------- 451

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                         L D   EKD+V+WS M+SGYAQ       + +F+++   G+ P+E 
Sbjct: 452 --------------LID---EKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEF 494

Query: 428 TLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           T  SV++AC    A ++QGK  H+   K+G      + + L+ MY K G +++A EVF  
Sbjct: 495 TFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR 554

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             ++ + SWN++I G+A +G   KSL++F EM+   +  + ITF+GV+ AC H GLV+EG
Sbjct: 555 QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEG 614

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R+F+ M++++ + P  +HY CMVDL  RAGML++A +LI  MP       W  LL AC+
Sbjct: 615 QRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACR 674

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + ++GE    KL+ LQP     +VLLSNI+A+ G W +  +VR +M  + V K  G 
Sbjct: 675 VHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGY 734

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE       F+AGD +HPQ + I   L+E++ +LK  GY PDT  V  D+++E KE  
Sbjct: 735 SWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVI 794

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L +HSE+LAIAFGLI   P  PI+I+KNLR+C DCHT  K IS+   R+IVVRD +RFHH
Sbjct: 795 LSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHH 854

Query: 787 FKHGSCSCMDFW 798
           FK GSCSC D+W
Sbjct: 855 FKGGSCSCGDYW 866



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 234/500 (46%), Gaps = 76/500 (15%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H   +K GF  DV V  +L++MY     +    ++FDE  V ++VSW S+LAGY  
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 210 ADNVEEAKFIYNKMP---------------------------------------ERNIIA 230
               E+A  ++++M                                        +  I  
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            NSM+ ++ +   V++A  +F  M  ++ VSW+++I+ +  N +  EA  LF  M    V
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            + + +  +V+  CAN+  +     +H   +K G +  +N++ AL+  YS C EI  A K
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 351 LFDAGHNL-DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           LF   H + +++SW ++ISGY++ G  ++A                              
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRA------------------------------ 380

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            ++LF +M+  G+RP+  T  ++++A    V+  Q   IHA + K   + +  +GT L D
Sbjct: 381 -MNLFCQMRREGVRPNHFTYSTILTA-NAAVSPSQ---IHALVVKTNYENSPSVGTALSD 435

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            Y K+G  + A ++F   +EK + +W+A++ G+A  G  + ++++F ++ K GV PNE T
Sbjct: 436 SYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFT 495

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F  VL AC       E  + F+S   +            +V +  + G ++ A E+ +  
Sbjct: 496 FSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ 555

Query: 590 PMSPDVATWGALLGACKKHG 609
            +  D+ +W +++    +HG
Sbjct: 556 -VDRDLVSWNSMISGYAQHG 574



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 219/496 (44%), Gaps = 83/496 (16%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE------------------- 225
           +++LFDE+P   L   N +L  +   D  +EA  ++  +                     
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 226 --------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                ++    S++ ++ +  +V +  R+F EM  K++VSW++L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ++ Y QN + E+AL LF  M    +  +     +VL   A    V+ G  VH + +K G+
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +  I + N++++MYS    ++ A+ +FD+  N + +SWNSMI+G++  G         D 
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG--------LDL 276

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                  E   LF  M+  G++  +    +VI  C ++  +   
Sbjct: 277 -----------------------EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF---HGTEEKGVSSWNALIIGF 502
           K +H  + KNG   +  + T L+  Y K   +D+A ++F   HG +   V SW A+I G+
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN--VVSWTAIISGY 371

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
             NG  D+++ +F +M++ GV PN  T+  +L A      V     H  +++ +   E +
Sbjct: 372 VQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA---NAAVSPSQIH--ALVVKTNYENS 426

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
                 + D   + G   EA ++ E +    D+  W A+L    + GD E   ++  +L 
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 623 E--LQPDHDGFHVLLS 636
           +  ++P+   F  +L+
Sbjct: 486 KEGVEPNEFTFSSVLN 501


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 341/574 (59%), Gaps = 4/574 (0%)

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           +  + M+  +   G++  +  +F  + +   + ++++I  Y +    E  +  + +M   
Sbjct: 106 LVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSW 165

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
               D      VL +   L  V  G  VH L ++IG++  + +  +LI +Y  CGEI  A
Sbjct: 166 GFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDA 225

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            K+FD     D+ SWN++++GY K G ++ A A+F+ M  +++VSW+TMISGY+Q     
Sbjct: 226 GKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQ 285

Query: 409 ETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + LSLF EM  +  G+RP+  T++SV+ AC  L  L++G+ IH    + GL  N+ +   
Sbjct: 286 QALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIA 345

Query: 467 LIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           L  MY K G + +A   F      EK + +WN +I  +A  G   +++  F EM ++G+ 
Sbjct: 346 LTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQ 405

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P++ITF G+L  C H GLVD G ++FN M   + + P  +HY C+ DLLGRAG L EA +
Sbjct: 406 PDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASK 465

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           L+  MPM    + WG+LL AC+KH + EM E   RKL  L+P++ G +VLLSN++A  GR
Sbjct: 466 LVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGR 525

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W +V ++R ++  +G  K PGCS IE NG  H FL GD +HPQ  EI   L+ + +K+K 
Sbjct: 526 WQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKA 585

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY PDT  V  DI +EEKE  L  HSEKLA+AFG++       +R+ KNLRIC DCHTA
Sbjct: 586 AGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTA 645

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             FIS  + RE++VRD +RFHHFK G CSC D+W
Sbjct: 646 MVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 200/428 (46%), Gaps = 65/428 (15%)

Query: 20  AKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI 79
           + P   P ++ + +   L      K   Q+ + M+L GL       S+++ F        
Sbjct: 63  SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYAS---SG 119

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  S  +F  +  P+  +FN+M+RAY +    ++ +  Y  M +     D +T+P + +
Sbjct: 120 DIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLK 179

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           +S   LSV+ GK +H  +L+ G   D+YV  +LI +Y  CG+++ A K+FD   + D+ S
Sbjct: 180 SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 239

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           WN++LAGY  +  ++ A  I+ +MP RNI++  +MI  + + G   +A  LF EM K+  
Sbjct: 240 WNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKE-- 297

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
                                      D  V  + V ++SVL ACA L+ ++ G  +H L
Sbjct: 298 ---------------------------DSGVRPNWVTIMSVLPACAQLSTLERGRQIHEL 330

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA--GHNLDLISWNSMISGYLKCGSVE 377
           A ++G+    ++  AL  MY+ CG +  A   FD    +  +LI+WN+MI+ Y   G   
Sbjct: 331 ACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGL 390

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +A + F  MI+                                GI+PD+ T   ++S C+
Sbjct: 391 QAVSTFREMIQA-------------------------------GIQPDDITFTGLLSGCS 419

Query: 438 HLVALDQG 445
           H   +D G
Sbjct: 420 HSGLVDVG 427



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 154/374 (41%), Gaps = 68/374 (18%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V      L ++K G  VHA  +  G++    + + ++  Y+S G+I ++  +F+      
Sbjct: 76  VFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPS 135

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
            + +NSMI  Y + G  E+                               T++ +  M  
Sbjct: 136 SLLFNSMIRAYARYGFAER-------------------------------TVATYFSMHS 164

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM--------- 470
            G   D  T   V+ +   L+++  GK +H  I + GL+ +  + T+LI +         
Sbjct: 165 WGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIND 224

Query: 471 ----------------------YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
                                 Y K GC+D AL +F     + + SW  +I G++ +GLA
Sbjct: 225 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 284

Query: 509 DKSLEMFSEMKK--SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            ++L +F EM K  SGV PN +T + VL AC  +  ++ G R  + +     L  N+   
Sbjct: 285 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVL 343

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVE-- 623
             +  +  + G L +A    + +  +  ++  W  ++ A   +G         R++++  
Sbjct: 344 IALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAG 403

Query: 624 LQPDHDGFHVLLSN 637
           +QPD   F  LLS 
Sbjct: 404 IQPDDITFTGLLSG 417



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P   +   V    T L  L  G  +HA++   GL+  +++G+ ++  Y   G +D+++ V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F+G  E     +N++I  +A  G A++++  +  M   G T +  TF  VL +   +  V
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
             G +  + +I    L+ +      ++ L G+ G + +A ++ ++M +  DV++W ALL 
Sbjct: 188 WMG-KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR-DVSSWNALLA 245

Query: 604 ACKKHG 609
              K G
Sbjct: 246 GYTKSG 251


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 375/662 (56%), Gaps = 62/662 (9%)

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           L QA     SV  GK +H  +  +G  SD +++N L+N+Y+  G+L AA  LFD      
Sbjct: 75  LLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFD------ 128

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                                    +MP RNI++ N MI  +   GN+  A  LF EMP 
Sbjct: 129 -------------------------RMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPD 163

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           +++ +W+A+++   + EM EEAL+LF  M +   M DE  + SVL  CA+L  + AG  V
Sbjct: 164 RNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQV 223

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           HA  +K G EC + +  +L HMY   G +   E++         I+W             
Sbjct: 224 HAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERV---------INW------------- 261

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
                    M +  +V+W+T++SG AQ   F   L  +  M+  G RPD+ T VSVIS+C
Sbjct: 262 ---------MPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSC 312

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           + L  L QGK IHA   K G      + ++L+ MY + GC+ ++++ F   +E+ V  W+
Sbjct: 313 SELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWS 372

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           ++I  +  +G  ++++++F+EM++  +  NEITF+ +L AC H GL D+G   F+ M+++
Sbjct: 373 SMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKK 432

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + L+   +HY C+VDLLGR+G L+EAE +I SMP+  D   W  LL ACK H + E+  R
Sbjct: 433 YGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARR 492

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
           V  +++ + P     +VLL+NI++S  RW +V EVR  M  + V K PG S +E    +H
Sbjct: 493 VADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVH 552

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
           +F  GD  HP+  EI+  L+E+  ++K +GY PDT  V  D+D EEKE  L  HSEKLAI
Sbjct: 553 QFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAI 612

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AF L+      PIR+MKNLR+C+DCH A K+IS     EI+VRD  RFHHFK+G+CSC D
Sbjct: 613 AFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGD 672

Query: 797 FW 798
           +W
Sbjct: 673 YW 674



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 138/250 (55%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++L AC  L  V  G  +H+L    G      + N L+++YS  GE+  A  LFD     
Sbjct: 74  NLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRR 133

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           +++S N MI  YL  G++E A+ LFD M +++V +W+ M++G  + +   E L LF  M 
Sbjct: 134 NIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMN 193

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
                PDE +L SV+  C HL AL  G+ +HAY+ K G + N ++G +L  MYMK G + 
Sbjct: 194 ELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMH 253

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           +   V +   +  + +WN L+ G A  G  +  L+ +  MK +G  P++ITFV V+ +C 
Sbjct: 254 DGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCS 313

Query: 539 HMGLVDEGHR 548
            + ++ +G +
Sbjct: 314 ELAILCQGKQ 323



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 177/429 (41%), Gaps = 78/429 (18%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   K  +   Q+ S +  +G  +D F ++ L+   +    F E+  +  +F  +  
Sbjct: 76  LQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSK---FGELQAAVALFDRMPR 132

Query: 94  PNGFIFNTMMRAYI----------------QRNVP---------------QQAICLYKLM 122
            N    N M++AY+                 RNV                ++A+ L+  M
Sbjct: 133 RNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRM 192

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
              +   D Y+   + +  A   ++  G+ +H +V+K GF+ ++ V  +L +MY   G +
Sbjct: 193 NELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSM 252

Query: 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEE----------AKFIYNKMPERNIIASN 232
               ++ +  P   LV+WN++++G       E           A F  +K+   ++I+S 
Sbjct: 253 HDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSC 312

Query: 233 SMIVLF-----------------------------GRKGNVAEACRLFKEMPKKDLVSWS 263
           S + +                               R G + ++ + F E  ++D+V WS
Sbjct: 313 SELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWS 372

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-K 322
           ++I+ Y  +   EEA+ LF  M    +  +E+  +S+L AC++  +   G  +  + V K
Sbjct: 373 SMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKK 432

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARA 381
            G++  +     L+ +    G +  AE +  +     D I W +++S      + E AR 
Sbjct: 433 YGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARR 492

Query: 382 LFDAMIEKD 390
           + D ++  D
Sbjct: 493 VADEVLRID 501


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/722 (35%), Positives = 392/722 (54%), Gaps = 55/722 (7%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK---LIHD 155
           +N M+ AY   N    A+ L+  M       D +T+   +  SAL L   E +   ++H 
Sbjct: 107 YNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS--SVLSALSLIADEERHCQMLHC 164

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGD---------LSAARKLFDESPVLDLV--SWNSIL 204
            V+K G      V N L++ Y  C           +++ARK+FDE+P   +   SW +++
Sbjct: 165 EVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMI 224

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           AGYV  D++  A+                                L   +     V+W+A
Sbjct: 225 AGYVRNDDLVAAR-------------------------------ELLDGLTYPIDVAWNA 253

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN----LTVVKAGTSVHALA 320
           +IS Y +  +YEEA   F  M    +  DE    S++SAC +    + +   G  VH   
Sbjct: 254 MISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYI 313

Query: 321 VKIGIEC----YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           ++  +E      +++ NALI  Y+    +  A ++FD     D+ISWN+++SGY+    +
Sbjct: 314 LRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRI 373

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           E+A ++F  M E++V++W+ MISG AQ+    E L LF +M+  G+ P +      I+AC
Sbjct: 374 EEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITAC 433

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           + L +LD G+ IH+ + + G       G  LI MY + G V++A  VF         SWN
Sbjct: 434 SVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWN 493

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I   A +G   K++E+F +M K  + P+ ITF+ +L AC H GL+ EG  +F++M   
Sbjct: 494 AMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTR 553

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + + P   HY  ++DLL RAGM  +A+ +I+SMP       W ALL  C+ HG+ E+G +
Sbjct: 554 YGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQ 613

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              +L+EL P  DG +++LSN++A+ G+WD+V  VR +M  RGV K PGCS +E   ++H
Sbjct: 614 AADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVH 673

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
            FL  D  HP++  +   L ++  ++K  GY PDT  V  D++ E KE +L  HSEKLA+
Sbjct: 674 VFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAV 733

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
            +G++ +     IR+ KNLRIC DCH A K+IS+  +REIVVRDR RFHHFK+G CSC +
Sbjct: 734 VYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGN 793

Query: 797 FW 798
           +W
Sbjct: 794 YW 795



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/565 (25%), Positives = 256/565 (45%), Gaps = 92/565 (16%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           V +  Y  L Q + +  +    + +H H+L +GF  + ++ N LIN+Y    +++ ARKL
Sbjct: 3   VRDLAYRYLTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKL 62

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEAC 248
           FD+ P  D+V+  ++L+ Y ++ NV+ A+ ++N  P                        
Sbjct: 63  FDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP------------------------ 98

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
                +  +D VS++A+I+ Y        AL LF+ M  +  + D     SVLSA + + 
Sbjct: 99  -----LTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIA 153

Query: 309 VVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGE---------ITTAEKLFDAGHNL 358
             +     +H   +K+G     ++ NAL+  Y  C           + +A K+FD     
Sbjct: 154 DEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKN 213

Query: 359 DLI--SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
            +   SW +MI+GY++   +  AR L D +     V+W+ MISGY +   + E    F  
Sbjct: 214 QIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRR 273

Query: 417 MQHHGIRPDEATLVSVISAC----THLVALDQGKWIHAYIRKN--------GLKINSILG 464
           M   GI+ DE T  S+ISAC      +   + G+ +H YI +          L +N+ L 
Sbjct: 274 MHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALI 333

Query: 465 T---------------------------TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           T                            ++  Y+    ++ A  +F    E+ V +W  
Sbjct: 334 TFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTV 393

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G A NG  ++ L++F++MK  G+ P +  F G + AC  +G +D G +  + +I   
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVI--- 450

Query: 558 RLEPNS--KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH---- 611
           RL  +S       ++ +  R G+++ AE +  +MP   D  +W A++ A  +HG      
Sbjct: 451 RLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYV-DSVSWNAMIAALAQHGHGVKAI 509

Query: 612 EMGERVGRKLVELQPDHDGFHVLLS 636
           E+ E++ ++  ++ PD   F  +L+
Sbjct: 510 ELFEQMMKE--DILPDRITFLTILT 532



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 199/441 (45%), Gaps = 79/441 (17%)

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL---RLSV 147
           L  P    +N M+  Y++R + ++A   ++ M +  +  D YTY  L  A      ++ +
Sbjct: 243 LTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGM 302

Query: 148 FE-GKLIHDHVLKAGFDSD----VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           F  G+ +H ++L+   +      + VNN LI  Y     +  AR++FD+ PV D++SWN+
Sbjct: 303 FNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNA 362

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           +L+GYVNA  +EEA  I+++MPERN++    MI    + G   E  +LF +M  +     
Sbjct: 363 VLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSE----- 417

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
             L  C                         +      ++AC+ L  +  G  +H+  ++
Sbjct: 418 -GLEPC-------------------------DYAFAGAITACSVLGSLDNGQQIHSQVIR 451

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G +  ++  NALI MYS CG + +AE +F     +D +SWN+MI+   + G   KA  L
Sbjct: 452 LGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIEL 511

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F+ M+++D++                               PD  T +++++AC H   +
Sbjct: 512 FEQMMKEDIL-------------------------------PDRITFLTILTACNHAGLI 540

Query: 443 DQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALII 500
            +G+ +      + G+         LID+  + G    A  V      E G   W AL+ 
Sbjct: 541 KEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLA 600

Query: 501 GFAMNG-------LADKSLEM 514
           G  ++G        AD+ LE+
Sbjct: 601 GCRIHGNMELGIQAADRLLEL 621



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 159/418 (38%), Gaps = 92/418 (22%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF+ +   N   +  M+    Q    ++ + L+  M +  +   +Y +     A ++  S
Sbjct: 379 IFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGS 438

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ IH  V++ G DS +   N LI MY+ CG + +A  +F   P +D VSW      
Sbjct: 439 LDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSW------ 492

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                    N+MI    + G+  +A  LF++M K+D        
Sbjct: 493 -------------------------NAMIAALAQHGHGVKAIELFEQMMKED-------- 519

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGI 325
                                  ++ D +  +++L+AC +  ++K G      +  + GI
Sbjct: 520 -----------------------ILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGI 556

Query: 326 ECYINLQNALIHMYSSCGEITTAEKL-----FDAGHNLDLISWNSMISGYLKCGSVEKAR 380
               +    LI +    G    A+ +     F+AG  +    W ++++G    G++E   
Sbjct: 557 TPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPI----WEALLAGCRIHGNMELGI 612

Query: 381 ALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
              D ++E       T I   + YA   Q+ E   + + M+  G++ +       +    
Sbjct: 613 QAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMV 672

Query: 438 HLVALDQGK-----WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           H+  +D  +      ++ Y+++            L++   KLG V +   V H  E +
Sbjct: 673 HVFLVDDARHPEVQAVYTYLQQ------------LVNEMKKLGYVPDTKFVLHDMESE 718


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/445 (47%), Positives = 303/445 (68%)

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
            G  LD++SW +M+ G  + G V+ AR +FDAM  +++VSW++MISGY + D+F + L +
Sbjct: 158 GGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEV 217

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F EM+  G+  +     S + ACT   AL +G+ I+ ++ ++G+++++ L T ++DMY K
Sbjct: 218 FDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCK 277

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            GCVD A  VF     +G+++WN +I GFA++G  D +LE+F +M+ +GV P+++T + V
Sbjct: 278 CGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNV 337

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H G V EG R+ N ++  H +EP  +HYGCMVDL GRAG L EA+++I+ MPM P
Sbjct: 338 LTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDP 397

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D+A  GALLGACK HGD ++GE +G ++++L PD+ G +VLL+N+ A  GRWD+V +VR 
Sbjct: 398 DLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRR 457

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M  R V K  G S+IE +G   EF  G+  HPQ  EI  M  +M  +++ EGY PDT E
Sbjct: 458 LMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGE 517

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
              D+ +E+KE  L  HSEKLAIAFGL+   P   +RI KNLR+C DCH A K++SR F 
Sbjct: 518 ALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFG 577

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REIVVRDR RFHHFK G CSC D+W
Sbjct: 578 REIVVRDRSRFHHFKDGMCSCKDYW 602


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/561 (41%), Positives = 344/561 (61%), Gaps = 34/561 (6%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A +LF +M   D    + +I  Y +++   EA+ L+  M++  V VD      VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           +ACA L  VK G   H   +K G    + + NALI  Y +CG    A  +FD     D++
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           +WN MI+ +L  G  EKA  L D M + D                               
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLD------------------------------N 208

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRK-NGLKINS--ILGTTLIDMYMKLGCVD 478
           +RPDE T+VS++ AC  L  L++GK++H+Y ++ +  +IN   +L T L+DMY K G +D
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSID 268

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            AL+VF     + V +WNALI G AM+G  + ++ +F +M+   + P+++TF+ +L AC 
Sbjct: 269 LALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACS 328

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H GLVDEG   F +M  + ++EP  +HYGC+VDLL RA  + +A   IE+MP+  +   W
Sbjct: 329 HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLW 388

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
             LLGAC+  G  ++ E++GR+++EL+PD  G +V+LSN++A   +WD  L++R  M  +
Sbjct: 389 ATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNK 448

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFD 717
           G+ K PGCS IE NG+IH+F+AGDR+H Q  +I  M++EM +++ L+ G+ P T  V FD
Sbjct: 449 GIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFD 508

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           I++EEKE +LF HSEKLAIA GLI+    +PIRI+KNLR+CNDCH+  K  S+ ++REIV
Sbjct: 509 IEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIV 568

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
            RDR RFHHFK GSCSCMDFW
Sbjct: 569 ARDRSRFHHFKEGSCSCMDFW 589



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 216/455 (47%), Gaps = 60/455 (13%)

Query: 21  KPIFKPT--INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           KP  K T  I++  L+TH   C S  +  Q  + ++ T L+ +   +S+LI F   L   
Sbjct: 3   KPSSKCTKLISVDFLKTH---CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLA-LSHS 58

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
            +++Y+ K+F  +++P+ FI NTM+R Y +   P +A+ LY  M+   V VDNYTYP + 
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            A A   +V  G+  H  VLK GF SD++V N LI  Y  CG    A  +FDES V D+V
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 199 SWNSILAGYVNA------------------------------------DNVEEAKFIYNK 222
           +WN ++  ++N                                      N+E  KF+++ 
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 223 MPER-------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
             E        +++   +++ ++ + G++  A ++F+ M  +++ +W+ALI     +   
Sbjct: 239 SKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHG 298

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNA 334
           E+A+ LF  M   ++M D+V  +++L AC++  +V  G ++  A+  K  IE  +     
Sbjct: 299 EDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGC 358

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDL----ISWNSMISGYLKCGSVEKARALFDAMI--E 388
           ++ +     ++  A    +   N+ +    + W +++      G  + A  +   +I  E
Sbjct: 359 VVDLLCRARKVDDALAFIE---NMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELE 415

Query: 389 KDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
            D      M+S  YA   Q+   L L  +M++ GI
Sbjct: 416 PDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 450



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 51/283 (18%)

Query: 422 IRPDE--ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL---GC 476
           I+P      L+SV    TH  ++ + K  HA + +  L  N +  + LI  ++ L   G 
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLIS-FLALSHSGD 60

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A ++F   +       N +I G+A +    +++ ++  M + GV  +  T+  VL A
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 537 CRHMGLVDEGHRH---------------FNSMIQEHRLEPNSKHYGCMVDLLGRA----- 576
           C  +G V  G R                 N++IQ +    N   +GC  D+   +     
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYH---NCGSFGCACDVFDESTVRDV 177

Query: 577 -------------GMLKEAEELIESMP----MSPDVATWGALLGACKKHGDHEMGE---R 616
                        G+ ++A +L++ M     + PD  T  +L+ AC + G+ E G+    
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 617 VGRKLVELQPDHD-GFHVLLSNIHASKGRWDDVLEV-RGMMVR 657
             ++L + + + D      L +++A  G  D  L+V R M VR
Sbjct: 238 YSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 280


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 343/586 (58%), Gaps = 32/586 (5%)

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           G V    +  A  + +   + +++  N ++ ++ + G + +A R+F EMP KD+V+W+AL
Sbjct: 101 GKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTAL 160

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+ + QN    +AL+LF  M+      +   + S+L A  +   +  GT +HA  +K G 
Sbjct: 161 IAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGY 220

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +  + + +AL+ MY+ CG +  A+  FD       +SWN++ISG+ + G  E A      
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA------ 274

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                    L L  +MQ    +P   T  SV+SAC  + AL+QG
Sbjct: 275 -------------------------LHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG 309

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KW+HA++ K+GLK+ + +G TL+DMY K G +D+A  VF    +  V SWN ++ G A +
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL  ++L+ F +M + G+ PNEI+F+ VL AC H GL+DEG  +F  +++++++EP+  H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYF-ELMKKYKVEPDVPH 428

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y   VDLLGR G+L  AE  I  MP+ P  A WGALLGAC+ H + E+G     +  EL 
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P   G  +LLSNI+AS GRW DV +VR MM   GV K P CS +E    +H F+A D TH
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           P+I EI    +E++ K+K  GY PDT  V   +DQ+E+E  L  HSEKLA+AF L+    
Sbjct: 549 PRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPT 608

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
            +PIRI KN+R+C DCH A KF+S+  DREI+VRD +RFH F+ GS
Sbjct: 609 GSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 182/394 (46%), Gaps = 72/394 (18%)

Query: 147 VFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           V +G+++H H++ + F D+ + + N ++NMYA CG L  AR++FDE P  D+V+W +++A
Sbjct: 103 VEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIA 162

Query: 206 GYVNADNVEEAKFIYNKM------P---------------------------------ER 226
           G+   +   +A  ++ +M      P                                 + 
Sbjct: 163 GFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQS 222

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   ++++ ++ R G++  A   F  MP K  VSW+ALIS + +    E AL L   M 
Sbjct: 223 SVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                       SVLSACA++  ++ G  VHA  +K G++    + N L+ MY+  G I 
Sbjct: 283 RKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSID 342

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A+++FD     D++SWN                               TM++G AQH  
Sbjct: 343 DAKRVFDRLVKPDVVSWN-------------------------------TMLTGCAQHGL 371

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             ETL  F +M   GI P+E + + V++AC+H   LD+G +    ++K  ++ +     T
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVT 431

Query: 467 LIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            +D+  ++G +D A         E   + W AL+
Sbjct: 432 FVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 138/305 (45%), Gaps = 39/305 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + + +   +  ++  + Q N P+ A+ L+  ML      +++T   L +AS    
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEH 203

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G  +H   LK G+ S VYV + L++MYA CG + AA+  FD  P    VSWN++++
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------I 228
           G+      E A  +  KM  +N                                     +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 229 IA--SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           IA   N+++ ++ + G++ +A R+F  + K D+VSW+ +++   Q+ + +E L  F  M+
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  +E+  + VL+AC++  ++  G     L  K  +E  +      + +    G + 
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 347 TAEKL 351
            AE+ 
Sbjct: 444 RAERF 448



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 14/251 (5%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMKLG 475
           +Q   + PD      ++  CT L  ++QG+ +HA++  +    N  +L   +++MY K G
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           C+D+A  +F     K + +W ALI GF+ N     +L +F +M + G  PN  T   +L 
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLK 197

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A      +D G    ++   ++  + +      +VD+  R G +  A+   + MP   +V
Sbjct: 198 ASGSEHGLDPG-TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 596 ATWGALLG--ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA----SKGRWDDVL 649
            +W AL+   A K  G+H +      +    QP H  +  +LS   +     +G+W    
Sbjct: 257 -SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW---- 311

Query: 650 EVRGMMVRRGV 660
            V   M++ G+
Sbjct: 312 -VHAHMIKSGL 321


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/728 (34%), Positives = 399/728 (54%), Gaps = 79/728 (10%)

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL--IHDHVLKAGFDSDVYVNNT 171
           +A CL    L  N G+ + ++     AS +  S  + +L  IH  +L  G     ++   
Sbjct: 3   EASCLASPFLYTNSGIHSDSF----YASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITK 58

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------- 224
           LI+  +  GD++ AR++FD+ P   +  WN+I+ GY   ++ ++A  +Y+KM        
Sbjct: 59  LIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPD 118

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E ++   N +I L+ +   +  A  +F+
Sbjct: 119 SFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFE 178

Query: 253 --EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
              +P++ +VSW+A++S Y QN    EAL +F  M    V  D V +VSVL+A   L  +
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDL 238

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           + G S+HA  +K+G+E   +L                            LIS N+M   Y
Sbjct: 239 EQGRSIHASVMKMGLETEPDL----------------------------LISLNTM---Y 267

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            KCG V  A+ LFD M   +++ W+ MISGYA++    + + LF EM +  +RPD  ++ 
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISIT 327

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S ISAC  + +L+Q +W+  Y+ ++  + +  + + LIDM+ K G V+ A  VF  T ++
Sbjct: 328 SAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDR 387

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V  W+A+I+G+ ++G A +++ ++  M++ GV PN++TF+G+L AC H G+V EG   F
Sbjct: 388 DVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFF 447

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           N M  +H++ P  +HY C++DLLGRAG L +A E+I+ MP+ P V  WGALL ACKKH  
Sbjct: 448 NRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            E+G+   ++L  + P + G +V LSN++A+   WD V EVR  M  +G+ K  GCS +E
Sbjct: 507 VELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
             G +  F  GD++HP+  EI+  ++ +  +LK  G+  +      D++ EE E TL  H
Sbjct: 567 VRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SE++ IA+GLI+      +RI KNLR C +CH A K IS+   REIVVRD +RFHHFK G
Sbjct: 627 SERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDG 686

Query: 791 SCSCMDFW 798
            CSC D+W
Sbjct: 687 VCSCGDYW 694



 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 230/497 (46%), Gaps = 76/497 (15%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI +++++ GL    F  ++LI  S+    + +++++ ++F  L  P  F +N ++R
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSS---YGDITFARQVFDDLPRPQVFPWNAIIR 92

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Y + N  Q A+ +Y  M    V  D++T+P L +A      +  G+ +H  V + GF++
Sbjct: 93  GYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEA 152

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNK 222
           DV+V N LI +YA C  L  AR +F+  P+ +  +VSW +I++ Y       EA  I+++
Sbjct: 153 DVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQ 212

Query: 223 M------PE--------------------RNIIASN-------------SMIVLFGRKGN 243
           M      P+                    R+I AS              S+  ++ + G 
Sbjct: 213 MRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQ 272

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           VA A  LF +M   +L+ W+A+IS Y +N   ++A+ LF  MI+  V  D + + S +SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISA 332

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           CA +  ++    +     +      + + +ALI M++ CG +  A  +FD   + D++ W
Sbjct: 333 CAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVW 392

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           ++MI GY                                 H Q  E +SL+  M+  G+ 
Sbjct: 393 SAMIVGY-------------------------------GLHGQAREAISLYRAMERDGVH 421

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P++ T + ++ AC H   + +G W    +  + +         +ID+  + G +D A EV
Sbjct: 422 PNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEV 481

Query: 484 FHGTE-EKGVSSWNALI 499
                 + GV+ W AL+
Sbjct: 482 IKCMPVQPGVTVWGALL 498


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/575 (42%), Positives = 352/575 (61%), Gaps = 33/575 (5%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E ++  + S++ ++ R G V +A +LF +MP +D  SW+A+IS Y QN    EAL +   
Sbjct: 26  EWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADE 85

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    V +D + V SVL  CA +  + +G  +H   +K G+E  + + NALI+MY+    
Sbjct: 86  MRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYA---- 141

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      K GS+  A+ +F  +I KDVVSW+T+I+GYAQ+
Sbjct: 142 ---------------------------KFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQN 173

Query: 405 DQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
              SE + +++ M+ H  I P++ T VS++ A +H+ AL QG  IH  + KN L  +  +
Sbjct: 174 GLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFV 233

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT LIDMY K G +D+A+ +F+    K    WNA+I  + ++G  +K+LE+F EMK   V
Sbjct: 234 GTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERV 293

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+ ITFV +L AC H GLV +    FN M +E+ ++P+ KHYGCMVDL GRAG L+ A 
Sbjct: 294 KPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAF 353

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
             I+ MP+ PD + WGALL AC+ HG+ E+G+    +L E+  ++ G++VLLSNI+A+ G
Sbjct: 354 NFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVG 413

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +W+ V +VR +   RG+ K PG S I  N  +  F  G++THP+  EI   L ++  K+K
Sbjct: 414 KWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIK 473

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY PD   V  D++++EKE  L  HSE+LAIA+G+I+ SP  PIRI KNLR+C DCHT
Sbjct: 474 TIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHT 533

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             KFIS   +REI+VRD  RFHHFK G+CSC D+W
Sbjct: 534 VTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 171/340 (50%), Gaps = 40/340 (11%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V+ AC +L     G  +H L +K+G E  + +  +L+HMYS                   
Sbjct: 3   VVKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYS------------------- 40

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                       + G V  AR LFD M  +D  SW+ MISGY Q+   +E L +  EM+ 
Sbjct: 41  ------------RFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRL 88

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G++ D  T+ SV+  C  +  +  GK IH Y+ K+GL+    +   LI+MY K G + +
Sbjct: 89  EGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGH 148

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACR 538
           A +VF G   K V SWN LI G+A NGLA +++E++  M++   + PN+ T+V +L A  
Sbjct: 149 AQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H+G + +G R    +I+ + L  +     C++D+ G+ G L +A  L   +P    V  W
Sbjct: 208 HVGALQQGMRIHGQVIK-NCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVP-W 265

Query: 599 GALLGACKKHGDHEMGERVGR--KLVELQPDHDGFHVLLS 636
            A++     HGD E    + R  K   ++PDH  F  LLS
Sbjct: 266 NAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLS 305



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 46/396 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           ++ C       +I   ++  G   D F A+ L+   +    F  +  + K+F  + + + 
Sbjct: 4   VKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSR---FGLVGDARKLFDDMPARDR 60

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+  Y Q     +A+ +   M    V +D  T   +    A    +  GKLIH +
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLY 120

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V+K G + +++V+N LINMYA  G L  A+K+F    + D+VSWN+++ GY       EA
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEA 179

Query: 217 KFIYNKMPERNIIASNS----------------------------------------MIV 236
             +Y  M E   I  N                                         +I 
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLID 239

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+ G + +A  LF ++P+K+ V W+A+ISCY  +   E+AL LF  M   RV  D + 
Sbjct: 240 MYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHIT 299

Query: 297 VVSVLSACANLTVVK-AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            VS+LSAC++  +V  A    + +  + GI+  +     ++ ++   GE+  A       
Sbjct: 300 FVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKM 359

Query: 356 H-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
               D  +W ++++     G++E  +   + + E D
Sbjct: 360 PIQPDASAWGALLNACRIHGNIELGKHASERLFEVD 395


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/567 (41%), Positives = 334/567 (58%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S++ L+ R G +  A R+F EMP    VSW+ALI+ Y       EA+ +  N   + + 
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 216

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D    V VL+ACA +  +  G +V   A + GI                      A+ +
Sbjct: 217 PDSFTAVRVLTACARVADLATGETVWRAAEQEGI----------------------AQSV 254

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F A   +DL         Y+KCG + KAR +FD M +KD V+W  M+ GYA +    E L
Sbjct: 255 FVATAAVDL---------YVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREAL 305

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF+ MQ  G+RPD   +   +SACT L ALD G+     +  +    N +LGT LIDMY
Sbjct: 306 DLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMY 365

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G    A  VF    +K +  WNA+I+G  M G    +  +  +M+KSGV  N+ TF+
Sbjct: 366 AKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFI 425

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G+L +C H GL+ +G R+F++M + + + P  +HYGC+VDLL RAG+L+EA +LI+ MPM
Sbjct: 426 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPM 485

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             +    GALLG CK H + E+ E V  +L+ L+P + G +V+LSNI++++GRW+D  ++
Sbjct: 486 PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKL 545

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M  +GV K+P CS +E  G +HEF  GD++HP  ++I   LDE+  ++K  GY P T
Sbjct: 546 RLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 605

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V FD++ EEKE TL  HSEKLAIAF L+   P   IR+ KNLR+C+DCHTA K ISR 
Sbjct: 606 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRI 665

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REI+VRD +RFH F+ GSCSC D+W
Sbjct: 666 THREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 130/554 (23%), Positives = 225/554 (40%), Gaps = 142/554 (25%)

Query: 133 TYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           T+P+ L  AS L   +  G+ +H   LK    ++ +V  +L+ +YA CG L  A+++FDE
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 192 SPVLDLVSWNSILAGYVNADNVEEA------KFIYNKMPE-------------------- 225
            P    VSW +++  Y++A ++ EA       F     P+                    
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                        +++  + + + L+ + G +A+A  +F +M  KD V+W A++  Y  N
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 298

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF+ M    V  D   V   LSAC  L  +  G    A+ +    E   N  
Sbjct: 299 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGR--QAIRMVDWDEFLDNPV 356

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  ALI MY+ CG    A  +F      D+I WN+MI G                     
Sbjct: 357 LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGL-------------------- 396

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIH 449
                    G   H++ +   +L  +M+  G++ ++ T + ++ +CTH   +  G ++ H
Sbjct: 397 ---------GMTGHEKTA--FTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 445

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
                N  K+  I  +  I+ Y   GC+ + L                     +  GL  
Sbjct: 446 -----NMTKLYHI--SPRIEHY---GCIVDLL---------------------SRAGLLQ 474

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEP-N 562
           ++ ++  +M    +  N +    +LG C+          H N+ + EH      RLEP N
Sbjct: 475 EAHQLIDDMP---MPANAVILGALLGGCK---------IHRNAELAEHVLTQLIRLEPWN 522

Query: 563 SKHYGCMVDLLGRAGMLKEAEEL--------IESMPMSPDVATWGALLGACKKH--GD-- 610
           S +Y  + ++    G  ++A +L        +E +P      +W    G   +   GD  
Sbjct: 523 SGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVP----ACSWVEFEGKVHEFRVGDKS 578

Query: 611 HEMGERVGRKLVEL 624
           H + +++ +KL EL
Sbjct: 579 HPLSDQIYKKLDEL 592



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/388 (19%), Positives = 163/388 (42%), Gaps = 58/388 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  ++ AY+     ++A+ + +    N +  D++T   +  A A   
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +     + G    V+V    +++Y  CG+++ AR++FD+    D V+W +++ 
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 293

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY +  +  EA  ++  M                                          
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 353

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N +   ++I ++ + G+ AEA  +F++M KKD++ W+A+I         + A  L   M 
Sbjct: 354 NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQME 413

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V +++   + +L +C +  +++ G    H +     I   I     ++ + S  G +
Sbjct: 414 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLL 473

Query: 346 TTAEKLFDAGHNLDL-ISWNSMISGYLKCG-----SVEKARALFDAMIEKDVVSWST--- 396
             A +L D     D+ +  N++I G L  G     + E A  +   +I  +   W++   
Sbjct: 474 QEAHQLID-----DMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE--PWNSGNY 526

Query: 397 -MISG-YAQHDQFSETLSLFMEMQHHGI 422
            M+S  Y+   ++ +   L ++M+  G+
Sbjct: 527 VMLSNIYSNRGRWEDAAKLRLDMKEKGV 554


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/632 (37%), Positives = 364/632 (57%), Gaps = 36/632 (5%)

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMI----VLFGRKGNVAEACRLFKEMPKKD 258
           +L   + + ++ EAK I+    +    A +S++     L+     V  A RLF E+P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           ++ W+ +I  Y  N  ++ A+ L+ +M+   V  ++     VL AC+ L  ++ G  +H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG--------- 369
            A   G+E  + +  AL+  Y+ CG +  A++LF +  + D+++WN+MI+G         
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 370 -----------------------YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                     C  +  AR +FD M  ++ VSWS MI GY   D 
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L +F  MQ  GI PD  T++ V+ AC+HL AL  G   H Y+   G   ++++   
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 313

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G +  A EVF+  +   + SWNA+IIG+ ++GL  ++L +F ++   G+ P+
Sbjct: 314 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPD 373

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           +ITF+ +L +C H GLV EG   F++M ++  + P  +H  CMVD+LGRAG++ EA   I
Sbjct: 374 DITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            +MP  PDV  W ALL AC+ H + E+GE V +K+  L P+  G  VLLSNI+++ GRWD
Sbjct: 434 RNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWD 493

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   +R      G+ KIPGCS IE NGI+H F+ GD++H Q+++I+  L+E+  ++K  G
Sbjct: 494 DAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLG 553

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  +   V  D+++EEKE  L  HSEKLAIAFG++ +    PI + KNLR+C DCHTA K
Sbjct: 554 YQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIK 613

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F++    REI VRD +RFHHFK+G+C+C DFW
Sbjct: 614 FMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 221/459 (48%), Gaps = 38/459 (8%)

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           +S L K +   L   ++  + ++F  + +P+  ++N ++RAY        AI LY  ML+
Sbjct: 43  SSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLH 102

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
             V  + YTYP + +A +  L++ +G  IH H    G +SDV+V   L++ YA CG L  
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV-LFGRKGN 243
           A++LF      D+V+WN+++AG       ++A  +  +M E  I  ++S IV +      
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQC 222

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A ++F  M  ++ VSWSA+I  Y  ++  +EAL +F  M    +  D   ++ VL A
Sbjct: 223 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPA 282

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C++L  ++ G   H   +  G      + NALI MYS CG+I+ A ++F+     D++SW
Sbjct: 283 CSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSW 342

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+                               MI GY  H    E L LF ++   G++
Sbjct: 343 NA-------------------------------MIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 424 PDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           PD+ T + ++S+C+H   + +G+ W  A  R   +         ++D+  + G +D A  
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 483 VFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                  E  V  W+AL+    ++    K++E+  E+ K
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIH----KNIELGEEVSK 466



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 37/374 (9%)

Query: 331 LQNALIHMYSSCGE---ITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           ++N  +H+  +C +   +T A+K+         N D    + +   YL C  V  AR LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
           D +    V+ W+ +I  YA +  F   + L+  M H G+RP++ T   V+ AC+ L+A++
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  IH++ +  GL+ +  + T L+D Y K G +  A  +F     + V +WNA+I G +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           + GL D ++++  +M++ G+ PN  T VGVL  C+    +    + F+ M        N 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVMGVR-----NE 238

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMS---PDVATWGALLGACK-----KHGDHEMGE 615
             +  M+     +  +KEA ++   M +S   PD+ T   +L AC      +HG    G 
Sbjct: 239 VSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 298

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK---------IPGC 666
            + R         +     L ++++  G+     EV   M R  +V          I G 
Sbjct: 299 LIVRGFATDTLICNA----LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGL 354

Query: 667 SMIEANGIIHEFLA 680
            M EA G+ H+ LA
Sbjct: 355 GM-EALGLFHDLLA 367


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/740 (33%), Positives = 402/740 (54%), Gaps = 73/740 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+   +Q  +  QA+ L++ M    + +++YT   + Q       +  G+ +H  +L
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEAK 217
           K+G + ++  N  L+ MY  CG + +A ++F E    D +SWNS+L+ YV N    E  +
Sbjct: 294 KSGSEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352

Query: 218 FIYNKM-----PERNIIAS---------------------------------NSMIVLFG 239
           FI   +     P+   I S                                 N+++ ++ 
Sbjct: 353 FISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYM 412

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +   +  +  +F  M  KD +SW+ +I+CY Q+  + EAL +F       + VD +++ S
Sbjct: 413 KCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGS 472

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L AC+ L  +     +H  A++ G+                                LD
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNGL--------------------------------LD 500

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+  N +I  Y +CG V  +  +F+ + +KD+V+W++MI+ YA     +E L LF EMQ 
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             ++PD   LVS++ A   L +L +GK +H ++ +    +   + ++L+DMY   G +  
Sbjct: 561 TDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSG 620

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           AL+VF+  + K +  W A+I    M+G   +++++F  M ++GVTP+ ++F+ +L AC H
Sbjct: 621 ALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSH 680

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
             LV+EG  + + M+  +RLEP  +HY C+VDLLGR+G  +EA E I+SMP+ P    W 
Sbjct: 681 SKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWC 740

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           +LLGAC+ H +HE+      +L+EL+PD+ G +VL+SN+ A  G+W++  EVR  +  RG
Sbjct: 741 SLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERG 800

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDI 718
           + K P CS IE    +H F   D +H     I+  L E+ ++L+ E GY  DT  V  D+
Sbjct: 801 LRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDV 860

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            +EEK   L RHSE+LAI+FGLI   P  P+RI KNLR+C DCH   K +S+ FDR+IVV
Sbjct: 861 SEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVV 920

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF  GSCSC DFW
Sbjct: 921 RDANRFHHFSGGSCSCGDFW 940



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 162/649 (24%), Positives = 297/649 (45%), Gaps = 85/649 (13%)

Query: 41  QSFKQFTQILSQMILTGLIA--DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           ++  Q  Q+ +  + TG +   D F A++L+          +      +F  + S   F 
Sbjct: 72  KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARL---LFDGMSSRTVFS 128

Query: 99  FNTMMRAYIQRNVPQQAICLYKLM---LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           +N ++ AY+      +A+ +Y+ M     + V  D  T   + +AS +      G  +H 
Sbjct: 129 WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHG 188

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD-ESPVLDLVSWNSILAGYVNADNVE 214
             +K G D   +V N LI MYA CG L +A ++F+      D+ SWNS+++G +      
Sbjct: 189 LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFL 248

Query: 215 EAKFIYNKMPERNIIASNS---------------------------------------MI 235
           +A  ++  M +R +++ NS                                       ++
Sbjct: 249 QALDLFRGM-QRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALL 307

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
           V++ + G V  A R+F+E+ +KD +SW++++SCY QN +Y EA+     M+      D  
Sbjct: 308 VMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHA 367

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VS+ SA  +L  +  G  VHA A+K  ++    + N L+ MY  C  I  +  +FD  
Sbjct: 368 CIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRM 427

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D ISW                               +T+I+ YAQ  +  E L +F 
Sbjct: 428 RIKDHISW-------------------------------TTIITCYAQSSRHIEALEIFR 456

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E Q  GI+ D   + S++ AC+ L  +   K +H Y  +NGL ++ ++   +ID+Y + G
Sbjct: 457 EAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECG 515

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            V ++L++F   E+K + +W ++I  +A +GL +++L +F+EM+ + V P+ +  V +LG
Sbjct: 516 EVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILG 575

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A   +  + +G      +I+ +           +VD+    G L  A ++  ++    D+
Sbjct: 576 AIGGLSSLAKGKEVHGFLIRRN-FHMEEAIVSSLVDMYSGCGSLSGALKVFNAVK-CKDM 633

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASK 642
             W A++ A   HG  +    + +++++  + PDH  F  LL     SK
Sbjct: 634 VLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSK 682



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 256/569 (44%), Gaps = 93/569 (16%)

Query: 142 ALRLSVFEGKLIHDHVLKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A + +V +G  +H H +  G     D ++   L+ MY  CG ++ AR LFD      + S
Sbjct: 69  AAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFS 128

Query: 200 WNSILAGYVNADNVEEAKFIYNKMP----------------------------------- 224
           WN+++  Y+++ +  EA  +Y  M                                    
Sbjct: 129 WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHG 188

Query: 225 -------ERNIIASNSMIVLFGRKGNVAEACRLFKEM-PKKDLVSWSALISCYEQNEMYE 276
                  +R+   +N++I ++ + G +  A R+F+ M   +D+ SW+++IS   QN M+ 
Sbjct: 189 LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFL 248

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ-NAL 335
           +AL LF  M    + ++    V VL  C  L  +  G  +HA  +K G E  +N+Q NAL
Sbjct: 249 QALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE--VNIQCNAL 306

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               KCG V+ A  +F  + EKD +SW+
Sbjct: 307 LVMYT-------------------------------KCGRVDSALRVFREIDEKDYISWN 335

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +M+S Y Q+  ++E +    EM   G +PD A +VS+ SA  HL  L  GK +HAY  K 
Sbjct: 336 SMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ 395

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
            L  ++ +G TL+DMYMK   ++ +  VF     K   SW  +I  +A +    ++LE+F
Sbjct: 396 RLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIF 455

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            E +K G+  + +    +L AC  +  +    +     I+   L+   K+   ++D+ G 
Sbjct: 456 REAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNR--IIDIYGE 513

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHV 633
            G +  + ++ E++    D+ TW +++      G  +  +      +  ++QPD      
Sbjct: 514 CGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVS 572

Query: 634 LLSNIHA----SKGRWDDVLEVRGMMVRR 658
           +L  I      +KG+     EV G ++RR
Sbjct: 573 ILGAIGGLSSLAKGK-----EVHGFLIRR 596


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/684 (36%), Positives = 387/684 (56%), Gaps = 76/684 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMSYSFKIFAFLESPN 95
           L+ C+S +   QI +Q++ TG        ++ +   TD  P I  + Y+ +IF +++ P 
Sbjct: 39  LKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTD--PSIGNLHYAERIFNYIDIPG 96

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
            FI                                   Y L+ +A     S  +  L+  
Sbjct: 97  LFI-----------------------------------YNLVIKAFTKNGSFRKAVLLFR 121

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            + + G   D +    +       G++    K++                G+V    +E 
Sbjct: 122 QLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVY----------------GFVVKSGLEF 165

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
             ++            NS++ ++   G V    ++F+EMP++D+VSW+ LIS Y +   Y
Sbjct: 166 DTYV-----------CNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRY 214

Query: 276 EEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           E+A+ +F  M     +  +E  VVS LSAC  L +++ G  +H   V+  +   I + NA
Sbjct: 215 EDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKIGNA 273

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY  CG ++ A ++F+      +I W SM+SGY+ CG +++AR LF+    +DVV W
Sbjct: 274 LVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLW 333

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           + MI+GY Q ++F + ++LF EMQ   + PD  TLV++++ C  L  L+QGKWIH YI +
Sbjct: 334 TAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDE 393

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           N + I++++GT LI+MY K G ++ +LE+F+G +EK  +SW ++I G AMNG   K+LE+
Sbjct: 394 NKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALEL 453

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F+EM ++GV P++ITF+GVL AC H GLV+EG +HF SM   +++EP  +HYGC++DLLG
Sbjct: 454 FAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLG 513

Query: 575 RAGMLKEAEELIESMPMSPD---VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           RAG L EAEELIE  P   +   V  +GALL AC+ HG+ EMGERV ++LV ++      
Sbjct: 514 RAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSV 573

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           H LL+NI+AS  RW+DV +VR  M   GV K+PGCS +E NGI+HEFL GD +HP++ EI
Sbjct: 574 HTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREI 633

Query: 692 DNMLDEMAKKL------KLEGYAP 709
            +MLD +AK L      ++EG  P
Sbjct: 634 YSMLDSIAKPLLGLDENEMEGEIP 657


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/826 (32%), Positives = 419/826 (50%), Gaps = 111/826 (13%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + K+F  +     F +N +M A++      +AI LYK M    V +D  T+P + +A   
Sbjct: 98  AVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGA 157

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWN 201
                 G  IH   +K G+   V+V N LI MY  CGDL  AR LFD   +   D VSWN
Sbjct: 158 LGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 202 SILAGYVNADNVEEAKFIYNKMPE------------------------------------ 225
           SI++ +V   N  EA  ++ +M E                                    
Sbjct: 218 SIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKS 277

Query: 226 ---RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
               ++  +N++I ++ + G + +A R+F+ M  +D VSW+ L+S   QNE+Y +AL  F
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYF 337

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            +M +     D+V V+++++A      +  G  VHA A++ G++  + + N L+ MY+ C
Sbjct: 338 RDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKC 397

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGY-------------------------LKCGSVE 377
             +      F+  H  DLISW ++I+GY                         +  GSV 
Sbjct: 398 CCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVL 457

Query: 378 KA-------------------RALFDAMIEKDVV-------------------------S 393
           +A                   R L D M++  +V                         S
Sbjct: 458 RACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS 517

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W++MI+    +    E L LF  ++   I+PD   ++S +SA  +L +L +GK IH ++ 
Sbjct: 518 WTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLI 577

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           + G  +   + ++L+DMY   G V+N+ ++FH  +++ +  W ++I    M+G  +K++ 
Sbjct: 578 RKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIA 637

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F +M    V P+ ITF+ +L AC H GL+ EG R F  M   ++LEP  +HY CMVDLL
Sbjct: 638 LFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLL 697

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
            R+  L+EA   + +MP+ P    W ALLGAC  H + E+GE   ++L++   ++ G + 
Sbjct: 698 SRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYA 757

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           L+SNI A+ GRW+DV EVR  M   G+ K PGCS IE +  IH F+A D++HPQ ++I  
Sbjct: 758 LISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYL 817

Query: 694 MLDEMAKKL-KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            L +  K L K  GY   T  V  ++ +EEK   L+ HSE+LA+ +GL+       IRI 
Sbjct: 818 KLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRIT 877

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC+DCHT  K  S    R +VVRD +RFHHF+ G CSC DFW
Sbjct: 878 KNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 251/562 (44%), Gaps = 96/562 (17%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +G+ +H  +LK+   +  ++   L+ MY  CG L  A K+FDE     + SWN+++  +V
Sbjct: 64  QGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFV 121

Query: 209 NADNVEEAKFIYNKM------------PE---------------------------RNII 229
           ++    EA  +Y  M            P                              + 
Sbjct: 122 SSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVF 181

Query: 230 ASNSMIVLFGRKGNVAEACRLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
             N++I ++G+ G++  A  LF    M K+D VSW+++IS +       EAL LF  M +
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQE 241

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  +    V+ L    + + VK G  +H   +K      + + NALI MY+ CG +  
Sbjct: 242 VGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMED 301

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++F++    D +SWN                               T++SG  Q++ +
Sbjct: 302 AGRVFESMLCRDYVSWN-------------------------------TLLSGLVQNELY 330

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           S+ L+ F +MQ+ G +PD+ +++++I+A      L +GK +HAY  +NGL  N  +G TL
Sbjct: 331 SDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K  CV      F    EK + SW  +I G+A N    +++ +F +++  G+  + 
Sbjct: 391 VDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDP 450

Query: 528 ITFVGVLGAC---RHMGLVDEGHRH-FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           +    VL AC   +    + E H + F   + +  L+        +V++ G  G +  A 
Sbjct: 451 MMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ------NAIVNVYGEVGHIDYAR 504

Query: 584 ELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLS---NI 638
              ES+  S D+ +W +++  C  +G     +      K   +QPD       LS   N+
Sbjct: 505 RAFESI-RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL 563

Query: 639 HA-SKGRWDDVLEVRGMMVRRG 659
            +  KG+     E+ G ++R+G
Sbjct: 564 SSLKKGK-----EIHGFLIRKG 580



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 192/426 (45%), Gaps = 72/426 (16%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
            AD + A+ LI           M  + ++F  +   +   +NT++   +Q  +   A+  
Sbjct: 280 FADVYVANALIAMYAKC---GRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNY 336

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           ++ M N+    D  +   L  AS    ++ +GK +H + ++ G DS++ + NTL++MYA 
Sbjct: 337 FRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAK 396

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK---------------- 222
           C  +      F+     DL+SW +I+AGY   +   EA  ++ K                
Sbjct: 397 CCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 223 ------MPERN----------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                 +  RN                I+  N+++ ++G  G++  A R F+ +  KD+V
Sbjct: 457 LRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIV 516

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++I+C   N +  EAL LF ++    +  D + ++S LSA ANL+ +K G  +H   
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           ++ G      + ++L+ MY+ CG +  + K+F +    DLI W SMI+     G   KA 
Sbjct: 577 IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAI 636

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
           ALF  M +++V+                               PD  T ++++ AC+H  
Sbjct: 637 ALFKKMTDQNVI-------------------------------PDHITFLALLYACSHSG 665

Query: 441 ALDQGK 446
            + +GK
Sbjct: 666 LMVEGK 671



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 199/437 (45%), Gaps = 38/437 (8%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +  +++++G+ G++ +A ++F EM ++ + SW+AL+  +  +  Y EA+ L+ +M    V
Sbjct: 82  ATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGV 141

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            +D     SVL AC  L   + G  +H +AVK G   ++ + NALI MY           
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYG---------- 191

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA-MIEK-DVVSWSTMISGYAQHDQFS 408
                                KCG +  AR LFD  M+EK D VSW+++IS +       
Sbjct: 192 ---------------------KCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCL 230

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E LSLF  MQ  G+  +  T V+ +        +  G  IH  + K+    +  +   LI
Sbjct: 231 EALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALI 290

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY K G +++A  VF     +   SWN L+ G   N L   +L  F +M+ SG  P+++
Sbjct: 291 AMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQV 350

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           + + ++ A    G + +G +  ++    + L+ N +    +VD+  +   +K      E 
Sbjct: 351 SVLNLIAASGRSGNLLKG-KEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFEC 409

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV--LLSNIHASKGRWD 646
           M    D+ +W  ++    ++  H     + RK+     D D   +  +L      K R +
Sbjct: 410 M-HEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSR-N 467

Query: 647 DVLEVRGMMVRRGVVKI 663
            + E+ G + +R +  I
Sbjct: 468 FIREIHGYVFKRDLADI 484



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 18/340 (5%)

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL---------KCGSVEKARALFDA 385
           L H +S   ++  A K    G  L  +   S +S +L         KCGS+  A  +FD 
Sbjct: 45  LEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDE 104

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M E+ + SW+ ++  +    ++ E + L+ +M+  G+  D  T  SV+ AC  L     G
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFA 503
             IH    K G      +   LI MY K G +  A  +F G   E++   SWN++I    
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
             G   ++L +F  M++ GV  N  TFV  L        V  G     ++++ +    + 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHF-ADV 283

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
                ++ +  + G +++A  + ESM +  D  +W  LL    ++  +       R +  
Sbjct: 284 YVANALIAMYAKCGRMEDAGRVFESM-LCRDYVSWNTLLSGLVQNELYSDALNYFRDMQN 342

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVL---EVRGMMVRRGV 660
                D   VL  N+ A+ GR  ++L   EV    +R G+
Sbjct: 343 SGQKPDQVSVL--NLIAASGRSGNLLKGKEVHAYAIRNGL 380


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/792 (33%), Positives = 412/792 (52%), Gaps = 74/792 (9%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-NGFIFNTMMRA 105
            Q+ +  + TG  +D F A+ L+        F  M  + ++F   +S  N   +N +M A
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
           Y++ +    AI ++  M+ + +    + +  +  A     ++  G+ +H  V++ G+D D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV----------------- 208
           V+  N L++MY   G +  A  +F++ P  D+VSWN++++G V                 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 209 ------------------NADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAE 246
                              A   +  + I+  M + N  + +     ++ ++ +   + +
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A ++F  M  +DL+  +ALIS       ++EAL LF  +    + V+   + +VL + A+
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L        VHALAVKIG                          +FDA H +     N +
Sbjct: 417 LEAASTTRQVHALAVKIGF-------------------------IFDA-HVV-----NGL 445

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I  Y KC  +  A  +F+     D+++ ++MI+  +Q D     + LFMEM   G+ PD 
Sbjct: 446 IDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 505

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L S+++AC  L A +QGK +HA++ K     ++  G  L+  Y K G +++A   F  
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+GV SW+A+I G A +G   ++LE+F  M   G+ PN IT   VL AC H GLVDE 
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R+FNSM +   ++   +HY CM+DLLGRAG L +A EL+ SMP   + + WGALLGA +
Sbjct: 626 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASR 685

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H D E+G+    KL  L+P+  G HVLL+N +AS G W++V +VR +M    + K P  
Sbjct: 686 VHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAM 745

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE    +H F+ GD++HP   EI   L E+   +   G+ P+      D+D+ EKE  
Sbjct: 746 SWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELL 805

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSE+LA+AF L++  P  PIR+ KNLRIC DCH A KFIS+   REI++RD +RFHH
Sbjct: 806 LSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHH 865

Query: 787 FKHGSCSCMDFW 798
           F+ G+CSC D+W
Sbjct: 866 FRDGTCSCGDYW 877



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 145/635 (22%), Positives = 273/635 (42%), Gaps = 87/635 (13%)

Query: 44  KQFTQILS-QMILTG--LIADTFAASRLIKFSTDLLPFIEMSY----SFKIFAFLESPNG 96
           +Q T+  + Q +L G  L A    +  L  F   L+ F         + + F  +  P  
Sbjct: 9   QQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCH 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA-SALRLSVFEGKLIHD 155
             +++++ AY    +P+ AI  +  M    V  + +  P++ +     RL    G  +H 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL----GAQVHA 124

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNSILAGYVNADNVE 214
             +  GF SDV+V N L+ MY   G +  AR++F+E+    + VSWN +++ YV  D   
Sbjct: 125 MAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCG 184

Query: 215 EAKFIYNKMP---------------------------------------ERNIIASNSMI 235
           +A  ++ +M                                        ++++  +N+++
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G V  A  +F++MP  D+VSW+ALIS    N     A+ L + M    ++ +  
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            + S+L AC+       G  +H   +K   +    +   L+ MY+    +  A K+FD  
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            + DLI  N++ISG                             S   +HD   E LSLF 
Sbjct: 365 FHRDLILCNALISG----------------------------CSHGGRHD---EALSLFY 393

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E++  G+  +  TL +V+ +   L A    + +HA   K G   ++ +   LID Y K  
Sbjct: 394 ELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           C+ +A  VF       + +  ++I   +     + ++++F EM + G+ P+      +L 
Sbjct: 454 CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC  +   ++G +  ++ + + +   ++     +V    + G +++AE    S+P    V
Sbjct: 514 ACASLSAYEQG-KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGV 571

Query: 596 ATWGALLGACKKHGDHEMG-ERVGRKLVE-LQPDH 628
            +W A++G   +HG  +   E  GR + E + P+H
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 391/716 (54%), Gaps = 47/716 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLSVFEGKLIHDHV 157
           +N M+ A+   +    A+ L+  M       D +T+  +L   S +       + +H  V
Sbjct: 98  YNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEV 157

Query: 158 LKAGFDSDVYVNNTLINMYAVCGD---------LSAARKLFDESPV--LDLVSWNSILAG 206
            K G  S   V N L++ Y  C           ++AARKLFDE+P    D  +W +I+AG
Sbjct: 158 FKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAG 217

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           YV  D++  A+                                L + M     V+W+A+I
Sbjct: 218 YVRNDDLVAAR-------------------------------ELLEGMTDHIAVAWNAMI 246

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y     YEEA  L   M    + +DE    SV+SA +N  +   G  VHA  ++  ++
Sbjct: 247 SGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQ 306

Query: 327 C----YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
                 +++ NALI +Y+ CG++  A ++FD     DL+SWN+++SG +    +E+A ++
Sbjct: 307 PSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSI 366

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F  M  + +++W+ MISG AQ+    E L LF +M+  G+ P +      I++C+ L +L
Sbjct: 367 FREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSL 426

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           D G+ +H+ I + G   +  +G  LI MY + G V+ A  VF         SWNA+I   
Sbjct: 427 DNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAAL 486

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           A +G   ++++++ +M K  + P+ ITF+ +L AC H GLV EG  +F++M   + + P 
Sbjct: 487 AQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPE 546

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
             HY  ++DLL RAGM  EA+ + ESMP  P    W ALL  C  HG+ E+G +   +L+
Sbjct: 547 EDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLL 606

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL P  DG ++ LSN++A+ G+WD+V  VR +M  RGV K PGCS IE   ++H FL  D
Sbjct: 607 ELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDD 666

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
             HP+++ +   L+++  +++  GY PDT  V  D++ E+KE  L  HSEKLA+ +G++ 
Sbjct: 667 AVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMK 726

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +     IR+ KNLRIC DCH A K+IS+  DREI+VRDR RFHHF++G CSC ++W
Sbjct: 727 LPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 228/488 (46%), Gaps = 55/488 (11%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK--KD 258
           N ++  Y  + N+  A+++++K+P+ +I+A+ +M+  +   GN+  A +LF   P   +D
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVH 317
            VS++A+I+ +  +     AL LF+ M     + D     SVL A + +   +     +H
Sbjct: 95  TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLH 154

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGE---------ITTAEKLFDAGH--NLDLISWNSM 366
               K G     ++ NAL+  Y SC           +  A KLFD       D  +W ++
Sbjct: 155 CEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTI 214

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+GY++   +  AR L + M +   V+W+ MISGY     + E   L   M   GI+ DE
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS----ILGTTLIDMYMKLGCVDNALE 482
            T  SVISA ++    + G+ +HAY+ +  ++ +      +   LI +Y + G +  A  
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARR 334

Query: 483 VFHGTEEKGVSSWNA-------------------------------LIIGFAMNGLADKS 511
           VF     K + SWNA                               +I G A NG  ++ 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-CMV 570
           L++F++MK  G+ P +  + G + +C  +G +D G +  + +IQ      +S   G  ++
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLG--HDSSLSVGNALI 452

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDH 628
            +  R G+++ A+ +  +MP   D  +W A++ A  +HG      ++  K++  ++ PD 
Sbjct: 453 TMYSRCGLVEAADTVFLTMPYV-DSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR 511

Query: 629 DGFHVLLS 636
             F  +LS
Sbjct: 512 ITFLTILS 519



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 55/352 (15%)

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A L+      +VHA  +  G + +  + N LI  Y     I  A  LFD     D+++  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 365 SMISGYLKCGSVEKARALFDA--MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           +M+S Y   G+++ A  LF+A  M  +D VS++ MI+ ++        L LF++M+  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 423 RPDEATLVSVISACTHLVALDQG--KWIHAYIRKNG-LKINSILG--------------- 464
            PD  T  SV+ A + L+A ++   + +H  + K G L + S+L                
Sbjct: 127 VPDPFTFSSVLGALS-LIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLV 185

Query: 465 --------------------------TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
                                     TT+I  Y++   +  A E+  G  +    +WNA+
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+   G  +++ ++   M   G+  +E T+  V+ A  + GL + G R  ++ +    
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIG-RQVHAYVLRTV 304

Query: 559 LEPNSKHY-----GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           ++P S H+       ++ L  R G L EA  + + MP+  D+ +W A+L  C
Sbjct: 305 VQP-SGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGC 354


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/567 (41%), Positives = 334/567 (58%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S++ L+ R G +  A R+F EMP    VSW+ALI+ Y       EA+ +  N   + + 
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D    V VL+ACA +  +  G +V   A + GI                      A+ +
Sbjct: 170 PDSFTAVRVLTACARVADLATGETVWRAAEQEGI----------------------AQSV 207

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F A   +DL         Y+KCG + KAR +FD M +KD V+W  M+ GYA +    E L
Sbjct: 208 FVATAAVDL---------YVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREAL 258

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF+ MQ  G+RPD   +   +SACT L ALD G+     +  +    N +LGT LIDMY
Sbjct: 259 DLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMY 318

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G    A  VF    +K +  WNA+I+G  M G    +  +  +M+KSGV  N+ TF+
Sbjct: 319 AKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFI 378

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G+L +C H GL+ +G R+F++M + + + P  +HYGC+VDLL RAG+L+EA +LI+ MPM
Sbjct: 379 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPM 438

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             +    GALLG CK H + E+ E V  +L+ L+P + G +V+LSNI++++GRW+D  ++
Sbjct: 439 PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKL 498

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M  +GV K+P CS +E  G +HEF  GD++HP  ++I   LDE+  ++K  GY P T
Sbjct: 499 RLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 558

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V FD++ EEKE TL  HSEKLAIAF L+   P   IR+ KNLR+C+DCHTA K ISR 
Sbjct: 559 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRI 618

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REI+VRD +RFH F+ GSCSC D+W
Sbjct: 619 THREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 130/554 (23%), Positives = 225/554 (40%), Gaps = 142/554 (25%)

Query: 133 TYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           T+P+ L  AS L   +  G+ +H   LK    ++ +V  +L+ +YA CG L  A+++FDE
Sbjct: 72  TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 192 SPVLDLVSWNSILAGYVNADNVEEA------KFIYNKMPE-------------------- 225
            P    VSW +++  Y++A ++ EA       F     P+                    
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                        +++  + + + L+ + G +A+A  +F +M  KD V+W A++  Y  N
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 251

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF+ M    V  D   V   LSAC  L  +  G    A+ +    E   N  
Sbjct: 252 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGR--QAIRMVDWDEFLDNPV 309

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  ALI MY+ CG    A  +F      D+I WN+MI G                     
Sbjct: 310 LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGL-------------------- 349

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIH 449
                    G   H++ +   +L  +M+  G++ ++ T + ++ +CTH   +  G ++ H
Sbjct: 350 ---------GMTGHEKTA--FTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 398

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
                N  K+  I  +  I+ Y   GC+ + L                     +  GL  
Sbjct: 399 -----NMTKLYHI--SPRIEHY---GCIVDLL---------------------SRAGLLQ 427

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEP-N 562
           ++ ++  +M    +  N +    +LG C+          H N+ + EH      RLEP N
Sbjct: 428 EAHQLIDDMP---MPANAVILGALLGGCK---------IHRNAELAEHVLTQLIRLEPWN 475

Query: 563 SKHYGCMVDLLGRAGMLKEAEEL--------IESMPMSPDVATWGALLGACKKH--GD-- 610
           S +Y  + ++    G  ++A +L        +E +P      +W    G   +   GD  
Sbjct: 476 SGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVP----ACSWVEFEGKVHEFRVGDKS 531

Query: 611 HEMGERVGRKLVEL 624
           H + +++ +KL EL
Sbjct: 532 HPLSDQIYKKLDEL 545



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/388 (19%), Positives = 163/388 (42%), Gaps = 58/388 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  ++ AY+     ++A+ + +    N +  D++T   +  A A   
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +     + G    V+V    +++Y  CG+++ AR++FD+    D V+W +++ 
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 246

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY +  +  EA  ++  M                                          
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N +   ++I ++ + G+ AEA  +F++M KKD++ W+A+I         + A  L   M 
Sbjct: 307 NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQME 366

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V +++   + +L +C +  +++ G    H +     I   I     ++ + S  G +
Sbjct: 367 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLL 426

Query: 346 TTAEKLFDAGHNLDL-ISWNSMISGYLKCG-----SVEKARALFDAMIEKDVVSWST--- 396
             A +L D     D+ +  N++I G L  G     + E A  +   +I  +   W++   
Sbjct: 427 QEAHQLID-----DMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE--PWNSGNY 479

Query: 397 -MISG-YAQHDQFSETLSLFMEMQHHGI 422
            M+S  Y+   ++ +   L ++M+  G+
Sbjct: 480 VMLSNIYSNRGRWEDAAKLRLDMKEKGV 507


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/792 (33%), Positives = 412/792 (52%), Gaps = 74/792 (9%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP-NGFIFNTMMRA 105
            Q+ +  + TG  +D F A+ L+        F  M  + ++F   +S  N   +N +M A
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGG---FGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
           Y++ +    AI ++  M+ + +    + +  +  A     ++  G+ +H  V++ G+D D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV----------------- 208
           V+  N L++MY   G +  A  +F++ P  D+VSWN++++G V                 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 209 ------------------NADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAE 246
                              A   +  + I+  M + N  + +     ++ ++ +   + +
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A ++F  M  +DL+  +ALIS       ++EAL LF  +    + V+   + +VL + A+
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L        VHALAVKIG                          +FDA H +     N +
Sbjct: 417 LEAASTTRQVHALAVKIGF-------------------------IFDA-HVV-----NGL 445

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I  Y KC  +  A  +F+     D+++ ++MI+  +Q D     + LFMEM   G+ PD 
Sbjct: 446 IDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 505

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L S+++AC  L A +QGK +HA++ K     ++  G  L+  Y K G +++A   F  
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+GV SW+A+I G A +G   ++LE+F  M   G+ PN IT   VL AC H GLVDE 
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R+FNSM +   ++   +HY CM+DLLGRAG L +A EL+ SMP   + + WGALLGA +
Sbjct: 626 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASR 685

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H D E+G+    KL  L+P+  G HVLL+N +AS G W++V +VR +M    + K P  
Sbjct: 686 VHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAM 745

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE    +H F+ GD++HP   EI   L E+   +   G+ P+      D+D+ EKE  
Sbjct: 746 SWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELL 805

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSE+LA+AF L++  P  PIR+ KNLRIC DCH A KFIS+   REI++RD +RFHH
Sbjct: 806 LSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHH 865

Query: 787 FKHGSCSCMDFW 798
           F+ G+CSC D+W
Sbjct: 866 FRDGTCSCGDYW 877



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/635 (22%), Positives = 274/635 (43%), Gaps = 87/635 (13%)

Query: 44  KQFTQILS-QMILTG--LIADTFAASRLIKFSTDLLPFIEMSY----SFKIFAFLESPNG 96
           +Q T+  + Q +L G  L A    +  L  F   L+ F         + ++F  +  P  
Sbjct: 9   QQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA-SALRLSVFEGKLIHD 155
             +++++ AY    +P+ AI  +  M    V  + +  P++ +     RL    G  +H 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL----GAQVHA 124

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNSILAGYVNADNVE 214
             +  GF SDV+V N L+ MY   G +  AR++F+E+    + VSWN +++ YV  D   
Sbjct: 125 MAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCG 184

Query: 215 EAKFIYNKMP---------------------------------------ERNIIASNSMI 235
           +A  ++ +M                                        ++++  +N+++
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G V  A  +F++MP  D+VSW+ALIS    N     A+ L + M    ++ +  
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            + S+L AC+       G  +H   +K   +    +   L+ MY+    +  A K+FD  
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            + DLI  N++ISG                             S   +HD   E LSLF 
Sbjct: 365 FHRDLILCNALISG----------------------------CSHGGRHD---EALSLFY 393

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E++  G+  +  TL +V+ +   L A    + +HA   K G   ++ +   LID Y K  
Sbjct: 394 ELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           C+ +A  VF       + +  ++I   +     + ++++F EM + G+ P+      +L 
Sbjct: 454 CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC  +   ++G +  ++ + + +   ++     +V    + G +++AE    S+P    V
Sbjct: 514 ACASLSAYEQG-KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGV 571

Query: 596 ATWGALLGACKKHGDHEMG-ERVGRKLVE-LQPDH 628
            +W A++G   +HG  +   E  GR + E + P+H
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/445 (47%), Positives = 303/445 (68%)

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
            G  LD++SW +M+ G  + G V+ AR +FDAM  +++VSW++MISGY + D+F + L +
Sbjct: 158 GGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEV 217

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F EM+  G+  +     S + ACT   AL +G+ I+ ++ ++G+++++ L T ++DMY K
Sbjct: 218 FDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCK 277

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            GCVD A  VF     +G+++WN +I GFA++G  D +LE+F +M+ +GV P+++T + V
Sbjct: 278 CGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNV 337

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H G V EG R+ N ++  H +EP  +HYGCMVDL GRAG L EA+++I+ MPM P
Sbjct: 338 LTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDP 397

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D+A  GALLGACK HGD ++GE +G ++++L PD+ G +VLL+N+ A  GRWD+V +VR 
Sbjct: 398 DLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRR 457

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M  R V K  G S+IE +G   EF  G+  HPQ  EI  M  +M  +++ EGY PDT E
Sbjct: 458 LMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGE 517

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
              D+ +E+KE  L  HSEKLAIAFGL+   P   +RI KNLR+C DCH A K++SR F 
Sbjct: 518 ALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFG 577

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REIVVRDR RFHHFK G CSC D+W
Sbjct: 578 REIVVRDRSRFHHFKDGMCSCKDYW 602


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/756 (35%), Positives = 407/756 (53%), Gaps = 77/756 (10%)

Query: 86  KIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           K+F  +   N  + +N+++ AY       +A+ L++ M    VG + YT  L+A   A  
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYT--LVAALQACE 123

Query: 145 LSVFE--GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
            S F+  G  IH  +LK+    DVYV N L+ M+   G +S A ++FDE    D ++WNS
Sbjct: 124 DSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNS 183

Query: 203 ILAGYVNADNVEEAKFIY------NKMPER------------------------------ 226
           ++AG+       EA   +      N  P+                               
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 227 ---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
              N+   N++I ++ +   VA A  +F +M  KDL+SW+ +I+ Y QN  + EAL L  
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            +    + VD +++ S L AC+ L  +     VH   +K G+                  
Sbjct: 304 KVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS----------------- 346

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                          DL+  N +I  Y  CG++  A  +F+++  KDVVSW++MIS Y  
Sbjct: 347 ---------------DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVH 391

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +   +E L +F  M+   + PD  TLVS++SA   L AL++GK IH +I + G  +    
Sbjct: 392 NGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGST 451

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +L+DMY   G ++NA +VF  T  K +  W  +I  + M+G    ++E+FS M+   +
Sbjct: 452 VNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKL 511

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+ ITF+ +L AC H GL++EG R   +M  +++LEP  +HY C+VDLLGRA  L+EA 
Sbjct: 512 IPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAY 571

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
             ++SM + P    W A LGAC+ H + ++GE   +KL++L PD  G +VL+SN+ A+ G
Sbjct: 572 HFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASG 631

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RW DV EVR  M   G+ K PGCS IE    +H FL  D++HP+  +I   L ++ +KL+
Sbjct: 632 RWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLE 691

Query: 704 LE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
            E GY P T  V  ++ +EEK   L+ HSE+LAIA+GL++ S   PIRI KNLR+C DCH
Sbjct: 692 KEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCH 751

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           T  K +S+ F+RE++VRD  RFHHF+ G CSC DFW
Sbjct: 752 TFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 210/459 (45%), Gaps = 75/459 (16%)

Query: 29  NLSILETHLQKCQ--SFKQF-TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           N   L   LQ C+  SFK+   +I + ++ +  + D + A+ L+      + F +MSY+ 
Sbjct: 111 NTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMH---VRFGKMSYAA 167

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           +IF  L+  +   +N+M+  + Q  +  +A+  +  + + N+  D  +   +  AS    
Sbjct: 168 RIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLG 227

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  GK IH + +K   DS++ + NTLI+MY+ C  ++ A  +FD+    DL+SW +++A
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA 287

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------N 227
            Y   +   EA  +  K+  +                                      +
Sbjct: 288 AYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD 347

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           ++  N +I ++   GN+  A R+F+ +  KD+VSW+++ISCY  N +  EAL +F  M +
Sbjct: 348 LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKE 407

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  D + +VS+LSA A+L+ +  G  +H    + G     +  N+L+ MY+ CG +  
Sbjct: 408 TSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLEN 467

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A K+F    +  L+ W +M                               I+ Y  H + 
Sbjct: 468 AYKVFICTRSKSLVLWTTM-------------------------------INAYGMHGRG 496

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
              + LF  M+   + PD  T ++++ AC+H   +++GK
Sbjct: 497 KAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGK 535



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 192/412 (46%), Gaps = 55/412 (13%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKK-DLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +  +NS++ ++ +  ++  A +LF  M ++ D+VSW+++IS Y  N    EAL LF  M 
Sbjct: 45  VFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQ 104

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V  +   +V+ L AC + +  K G  +HA  +K      + + NAL+ M+   G+++
Sbjct: 105 KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMS 164

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A ++FD     D I+WNSMI+                               G+ Q+  
Sbjct: 165 YAARIFDELDEKDNITWNSMIA-------------------------------GFTQNGL 193

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           ++E L  F  +Q   ++PDE +L+S+++A   L  L  GK IHAY  KN L  N  +G T
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNT 253

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K  CV  A  VF     K + SW  +I  +A N    ++L++  +++  G+  +
Sbjct: 254 LIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVD 313

Query: 527 EITFVGVLGAC---RHMGLVDEGH-----RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +     L AC   R +    E H     R  + ++ ++ +          +D+    G 
Sbjct: 314 TMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMI----------IDVYADCGN 363

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKH---GDHEMGERVGRKLVELQPD 627
           +  A  + ES+    DV +W +++ +C  H    +  +G     K   ++PD
Sbjct: 364 INYATRMFESIK-CKDVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPD 413



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 173/373 (46%), Gaps = 35/373 (9%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D      VL AC  +  +  G  +H L +K G +  + + N+L+ MY+ C +I  A 
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 350 KLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           KLFD      D++SWNS+I                               S Y+ + Q  
Sbjct: 66  KLFDRMNERNDVVSWNSII-------------------------------SAYSLNGQCM 94

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E L LF EMQ  G+  +  TLV+ + AC        G  IHA I K+   ++  +   L+
Sbjct: 95  EALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALV 154

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            M+++ G +  A  +F   +EK   +WN++I GF  NGL +++L+ F  ++ + + P+E+
Sbjct: 155 AMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEV 214

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           + + +L A   +G +  G +  ++   ++ L+ N +    ++D+  +   +  A  + + 
Sbjct: 215 SLISILAASGRLGYLLNG-KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDK 273

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR-WDD 647
           M ++ D+ +W  ++ A  ++  H    ++ RK+     D D   +  + +  S  R    
Sbjct: 274 M-INKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSH 332

Query: 648 VLEVRGMMVRRGV 660
             EV G  ++RG+
Sbjct: 333 AKEVHGYTLKRGL 345



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 9/231 (3%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+  G+  D  T   V+ AC  +  + +G  IH  I K G      +  +L+ MY K   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 477 VDNALEVFHGTEEKG-VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           +  A ++F    E+  V SWN++I  +++NG   ++L +F EM+K+GV  N  T V  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC        G     ++++ +++  +      +V +  R G +  A  + + +    D 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQV-LDVYVANALVAMHVRFGKMSYAARIFDELD-EKDN 178

Query: 596 ATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
            TW +++    ++G  +  +    G +   L+PD     V L +I A+ GR
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPD----EVSLISILAASGR 225



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 50  LSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
           LS +++  +I D +A    I ++T            ++F  ++  +   + +M+  Y+  
Sbjct: 345 LSDLMMQNMIIDVYADCGNINYAT------------RMFESIKCKDVVSWTSMISCYVHN 392

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
            +  +A+ ++ LM   +V  D+ T   +  A+A   ++ +GK IH  + + GF  +    
Sbjct: 393 GLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV 452

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N+L++MYA CG L  A K+F  +    LV W +++  Y      + A  +++ M ++ +I
Sbjct: 453 NSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLI 512

Query: 230 ASN----SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC 268
             +    +++      G + E  RL + M  K  L  W    +C
Sbjct: 513 PDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYAC 556


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/744 (34%), Positives = 405/744 (54%), Gaps = 66/744 (8%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSY---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
           + D      L  ++T L  + ++ Y     ++F  + + +   +N+++  Y    +  ++
Sbjct: 62  VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISES 121

Query: 116 ICLYKLMLNN-NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174
           + +Y +ML + +V ++  T+  +   S+ R  V  G+ IH  + K G+ S ++V + L++
Sbjct: 122 VRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVD 181

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSM 234
           MYA  G ++ A ++F+E                               +PE+NI+  N+M
Sbjct: 182 MYAKTGFINDANRIFEE-------------------------------IPEKNIVVYNTM 210

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I    R   + EA +LF  MP+KD +SW+ +I+   QN +++EA+  F  M      +D+
Sbjct: 211 ITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQ 270

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
               SVL+AC     +  G  +HA  ++   +  I + +AL+ MY               
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYC-------------- 316

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            KC +V+ A A+F  M  K+V+SW+ M+ GY Q+    E + +F
Sbjct: 317 -----------------KCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIF 359

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +MQ + I PD+ TL SVIS+C +L +L++G   H     +GL     +   LI +Y K 
Sbjct: 360 CDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKC 419

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +++A ++FH  + +   SW AL+ G+A  G A++++ +F  M   G+ P+ +TFVGVL
Sbjct: 420 GSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVL 479

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC   GLV++G+ +F  M++EHR+ P   HY CM+DLL RAG L+EA+  I  MP SPD
Sbjct: 480 SACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPD 539

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
              W  LL +C+ +G+ E+G+     L +L+P +   ++LLS+I+A+KG+WDDV ++R  
Sbjct: 540 AIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKG 599

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M   GV K PG S I+    +H F A DR+ P  ++I   L+ +  K+  EGY PD   V
Sbjct: 600 MREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFV 659

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+++ EK   L  HSEKLAIAFGL+ I     IR++KNLR+C DCH A K+ISR   R
Sbjct: 660 LHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQR 719

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD  RFH FK G CSC DFW
Sbjct: 720 EILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  235 bits (600), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 238/459 (51%), Gaps = 32/459 (6%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H  +++   + + ++ N LIN Y   GDL  AR +FD  P  +L SWN++L+ Y   
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             +++ + +++ MP  ++++ NS++  +   G ++E+ R++  M K              
Sbjct: 85  GYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLK-------------- 130

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
                           D  V ++ +   ++L   +N   V  G  +H    K G + Y+ 
Sbjct: 131 ----------------DGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLF 174

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + + L+ MY+  G I  A ++F+     +++ +N+MI+G L+C  + +A  LFD M EKD
Sbjct: 175 VGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKD 234

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW+T+I+G  Q+  F E +  F EM   G   D+ T  SV++AC   +ALD+GK IHA
Sbjct: 235 SISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHA 294

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           YI +   + N  +G+ L+DMY K   V  A  VF     K V SW A+++G+  NG +++
Sbjct: 295 YIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEE 354

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++ +F +M+++ + P++ T   V+ +C ++  ++EG + F+       L         ++
Sbjct: 355 AVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALI 413

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            L G+ G L+ A +L   M +  +V +W AL+    + G
Sbjct: 414 TLYGKCGSLEHAHQLFHEMKIRDEV-SWTALVSGYAQFG 451



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 33/179 (18%)

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI---- 499
           Q K +H  I +      + L   LI+ Y KLG + NA  VF    +  + SWN L+    
Sbjct: 23  QVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYS 82

Query: 500 ---------------------------IGFAMNGLADKSLEMFSEMKKSG-VTPNEITFV 531
                                       G+A NGL  +S+ +++ M K G V  N ITF 
Sbjct: 83  KLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFS 142

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
            +L    + G VD G R  +  I +   +        +VD+  + G + +A  + E +P
Sbjct: 143 TMLILSSNRGFVDLG-RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/603 (39%), Positives = 353/603 (58%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           +++ +     + N+++A+ I+  +     E +    NS+I L+ + G+V EA ++F +M 
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           KKD+VSW++LI+ Y QN+M  EA+ L   M+  R   +     S+L A         G  
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HALAVK      + + +AL+ MY+                               +CG 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYA-------------------------------RCGK 202

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +ISG+A+       L +F EMQ +G      T  S+ S 
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSG 262

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              + AL+QGKW+HA++ K+  K+ + +G T++DMY K G + +A +VF     K + +W
Sbjct: 263 LAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N+++  FA  GL  +++  F EM+KSG+  N+ITF+ +L AC H GLV EG +H+  MI+
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEG-KHYFDMIK 381

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP  +HY  +VDLLGRAG+L  A   I  MPM P  A WGALL AC+ H + ++G+
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + +L PD  G  VLL NI+AS G WD    VR MM   GV K P CS +E    +
Sbjct: 442 FAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSV 501

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI  M DE++ K++ EGY PD   V   +D++E+E  L  HSEK+A
Sbjct: 502 HMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIA 561

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A K+IS+ F+REIVVRD +RFHHF +GSCSC 
Sbjct: 562 LAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCG 621

Query: 796 DFW 798
           D+W
Sbjct: 622 DYW 624



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 180/412 (43%), Gaps = 71/412 (17%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y     A A   ++ + + IH H+  + F+ D +++N+LI++Y  CG +  A K+FD+  
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 194 VLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP------------------- 224
             D+VSW S++AGY   D   EA          +F  N                      
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 225 ----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALIS + +   
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            E AL++F  M  +          S+ S  A +  ++ G  VHA  VK   +    + N 
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT 293

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           ++ MY+  G +  A K+F+   N DL++WNS                             
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNS----------------------------- 324

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
             M++ +AQ+    E +S F EM+  GI  ++ T + +++AC+H   + +GK     I++
Sbjct: 325 --MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE 382

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMN 505
             L+       T++D+  + G ++ AL  +F    E   + W AL+    M+
Sbjct: 383 YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 135/293 (46%), Gaps = 42/293 (14%)

Query: 60  ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY 119
            D F  + LI         +E   + K+F  +   +   + +++  Y Q ++P +AI L 
Sbjct: 84  GDAFLDNSLIHLYCKCGSVVE---AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLL 140

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
             ML      + +T+  L +A+        G  IH   +K  +  DVYV + L++MYA C
Sbjct: 141 PGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC 200

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-------- 231
           G +  A  +FD+    + VSWN++++G+    + E A  ++ +M      A+        
Sbjct: 201 GKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIF 260

Query: 232 -------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                          N+M+ ++ + G++ +A ++F+ +  KDLV
Sbjct: 261 SGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +W+++++ + Q  + +EA+  F  M    + ++++  + +L+AC++  +VK G
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEG 373



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 8/194 (4%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P      + I+AC     LD  + IH ++  +  + ++ L  +LI +Y K G V  A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACR 538
           +VF    +K + SW +LI G+A N +  +++ +   M K    PN  TF  +L   GA  
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
             G+  + H    ++  +     +      ++D+  R G +  A  + + +  S +  +W
Sbjct: 167 DSGIGGQIH----ALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSW 221

Query: 599 GALLGACKKHGDHE 612
            AL+    + GD E
Sbjct: 222 NALISGFARKGDGE 235


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/781 (32%), Positives = 412/781 (52%), Gaps = 72/781 (9%)

Query: 43  FKQFTQILSQMIL-TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           F +F + L  ++L  G  ++T+  + L+   +       +S + +IF  +   +   +N+
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSG---NLSSAEQIFHCMSQRDRVSYNS 322

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++    Q+    +A+ L+K M  +    D  T   L  A A   ++  GK  H + +KAG
Sbjct: 323 LISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAG 382

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLF--------------------DESPVLDLVSWN 201
             SD+ V  +L+++Y  C D+  A + F                     E  V +  ++ 
Sbjct: 383 MTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYP 442

Query: 202 SILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           SIL         +  + I+ ++ +     N+  S+ +I ++ + G +  A ++F+ + + 
Sbjct: 443 SILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKEN 502

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D+VSW+A+I+ Y Q++ + EAL LF  M D  +  D +   S +SACA +  +  G  +H
Sbjct: 503 DVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIH 562

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           A             Q+ L                  +G++ DL   N+++S Y +CG V 
Sbjct: 563 A-------------QSCL------------------SGYSDDLSIGNALVSLYARCGKVR 591

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +A A FD +  KD VSW++++SG+AQ   F E L++F +M   G+  +  T  S +SA  
Sbjct: 592 EAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAA 651

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           ++  +  GK IH  IRK G    + +   LI +Y K G +D+              SWN+
Sbjct: 652 NIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDI-------------SWNS 698

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G++ +G   ++L++F +MK+  V PN +TFVGVL AC H+GLVDEG  +F SM + H
Sbjct: 699 MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAH 758

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            L P  +HY C+VDLLGR+G+L  A+  +E MP+ PD   W  LL AC  H + ++GE  
Sbjct: 759 NLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFA 818

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
              L+EL+P     +VL+SN++A  G+WD     R MM  RGV K PG S +E +  +H 
Sbjct: 819 ASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F AGD+ HP+ + I   L  +  +    GY P    +  D +  +K+ T   HSE+LAIA
Sbjct: 879 FFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIA 938

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL++++   P+ + KNLR+C DCH   K +S+  DR I+VRD +RFHHFK GSCSC D+
Sbjct: 939 FGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDY 998

Query: 798 W 798
           W
Sbjct: 999 W 999



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/542 (26%), Positives = 246/542 (45%), Gaps = 80/542 (14%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG-KLIHDH 156
           IFNT +   +   VP     L++ ML  NV  D   + ++ +  +     F   + IH  
Sbjct: 134 IFNTFIAERLMGRVPG----LFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAK 189

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            + +GF+S  ++ N LI++Y   G LS+A+K+F+     D VSW ++++G       EEA
Sbjct: 190 TITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEA 249

Query: 217 KFIYNKMP-------------------------ERNIIASNSMIVLFGRKGNVAEACRLF 251
             ++ ++                                 N+++ L+ R GN++ A ++F
Sbjct: 250 MLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIF 309

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             M ++D VS+++LIS   Q      AL LF  M       D V V S+LSACA++  + 
Sbjct: 310 HCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALP 369

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G   H+ A+K G+   I ++ +L+ +Y  C +I TA + F                   
Sbjct: 370 NGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC----------------- 412

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                        Y Q D  +++  +F +MQ  GI P++ T  S
Sbjct: 413 -----------------------------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPS 443

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++  CT L A D G+ IH  + K G + N  + + LIDMY K G +D+AL++F   +E  
Sbjct: 444 ILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKEND 503

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HF 550
           V SW A+I G+  +    ++L +F EM+  G+  + I F   + AC  +  +D+G + H 
Sbjct: 504 VVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHA 563

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            S +  +  + +  +   +V L  R G ++EA    + +  + D  +W +L+    + G 
Sbjct: 564 QSCLSGYSDDLSIGN--ALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLVSGFAQSGY 620

Query: 611 HE 612
            E
Sbjct: 621 FE 622



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/535 (21%), Positives = 221/535 (41%), Gaps = 95/535 (17%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A  +F EMP + L  W+ + + +    +      LF  M+   V  DE +   VL
Sbjct: 111 GDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVL 170

Query: 302 SACA-NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
             C+ N    +    +HA  +  G E    + N LI +Y                     
Sbjct: 171 RGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY--------------------- 209

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      K G +  A+ +F+ +  +D VSW  MISG +Q+    E + LF ++   
Sbjct: 210 ----------FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--- 256

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
                      V+SACT +   + GK +H  + K G    + +   L+ +Y + G + +A
Sbjct: 257 -----------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSA 305

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++FH   ++   S+N+LI G A  G  +++L +F +M      P+ +T   +L AC  +
Sbjct: 306 EQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASV 365

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL------IESMPMS-- 592
           G +  G + F+S   +  +  +    G ++DL  +   +K A E       ++++  S  
Sbjct: 366 GALPNG-KQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQ 424

Query: 593 -----------PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-HVLLSNIHA 640
                      P+  T+ ++L  C   G  ++GE++  ++++     + +   +L +++A
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA 484

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
             G+ D  L++   +    VV                 +AG   H +  E  N+  EM  
Sbjct: 485 KHGKLDHALKIFRRLKENDVVSWTA------------MIAGYTQHDKFTEALNLFKEMQD 532

Query: 701 KLKLEGYAPDTLEVAFDI---------DQEEK---ETTLFRHSEKLAIAFGLITI 743
               +G   D +  A  I         DQ  +   ++ L  +S+ L+I   L+++
Sbjct: 533 ----QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 20/196 (10%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+ HG+R +  T + ++  C           +++    +GLK        LID Y+  G 
Sbjct: 72  MEQHGVRANSQTFLWLLEGC-----------LNSRSFYDGLK--------LIDFYLAFGD 112

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A+ VF     + +S WN +   F    L  +   +F  M    V  +E  F  VL  
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C    +        ++       E ++     ++DL  + G L  A+++ E++  + D  
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLK-ARDSV 231

Query: 597 TWGALLGACKKHGDHE 612
           +W A++    ++G  E
Sbjct: 232 SWVAMISGLSQNGYEE 247


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 66/716 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLM------LNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           +N+++ A+++ + P+ A+ L+  M         N   D  +   +  A A   ++ + K 
Sbjct: 221 WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE 280

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH + ++ G  +D +V N LI+ YA CG ++ A K+F                       
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVF----------------------- 317

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISC 268
                   N M  +++++ N+M+  + + GN   A  LF+ M K+    D+++WSA+I+ 
Sbjct: 318 --------NVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG 369

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           Y Q    +EAL  F  MI      + V ++S+LSACA+L  +  G  +HA ++K   +C 
Sbjct: 370 YAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLK---KCL 426

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI- 387
           ++L N                         DL+ +N++I  Y KC S + AR++FD++  
Sbjct: 427 LSLDNDFGGDGDG----------------EDLMVYNALIDMYSKCRSFKAARSIFDSIPR 470

Query: 388 -EKDVVSWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQ 444
            E++VV+W+ MI GYAQ+   ++ L +F EM  + + + P+  T+  ++ AC HL AL  
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRM 530

Query: 445 GKWIHAYIRKNGLKINSI--LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           GK IHAY+ ++     S+  +   LIDMY K G VD A  VF    ++   SW +++ G+
Sbjct: 531 GKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
            M+G   ++L++F +M+K+G  P++I+F+ +L AC H G+VD+G  +F+ M +++ +  +
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVAS 650

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
           ++HY C++DLL R G L +A + I+ MPM P    W ALL AC+ H + E+ E    KLV
Sbjct: 651 AEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLV 710

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
            ++ ++DG + L+SNI+A+  RW DV  +R +M + G+ K PGCS ++       F  GD
Sbjct: 711 NMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGD 770

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
           R+HP   EI ++L+ +  ++K+ GY P+T     D+D EEK   L  HSEKLA+A+GL+T
Sbjct: 771 RSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLT 830

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            SP  PIRI KNLR+C DCH+A  +IS+  D EI+VRD  RFHHFK+GSCSC  +W
Sbjct: 831 TSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 227/443 (51%), Gaps = 33/443 (7%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQNEMYEEALVL 281
           E N+   N+++ ++ R G++ +A  +F E+ +K   D++SW+++++ + +      AL L
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 282 F--MNMIDHRVMVDE----VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           F  M+MI H    +E    + +V++L ACA+L  +     +H+ A++ G      + NAL
Sbjct: 241 FSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNAL 300

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDV 391
           I  Y+ CG +  A K+F+     D++SWN+M++GY + G+   A  LF+ M    I  DV
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           ++WS +I+GYAQ     E L  F +M   G  P+  T++S++SAC  L AL QG  IHAY
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 452 IRKNGL------------KINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNA 497
             K  L              + ++   LIDMY K      A  +F      E+ V +W  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 498 LIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           +I G+A  G ++ +L++FSEM  K   V PN  T   +L AC H+  +  G +    + +
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 556 EHRLEPNSKHYG-CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
            H  EP+      C++D+  + G +  A  + +SMP   +V +W +++     HG  +  
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEV-SWTSMMSGYGMHGRGKEA 599

Query: 615 ERVGRKLVE--LQPDHDGFHVLL 635
             +  K+ +    PD   F VLL
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLL 622



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 175/419 (41%), Gaps = 75/419 (17%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G   +A  + + +     V W+ L+  + +    + A+ +   M+      D   +   L
Sbjct: 97  GATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--- 358
            AC  L     G ++H L    G E  + + NAL+ MYS CG +  A  +FD        
Sbjct: 157 KACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGID 216

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D+ISWNS+++ ++K  +   A  LF  M                         S+ +  +
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEM-------------------------SMIVHEK 251

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
               R D  ++V+++ AC  L AL Q K IH+Y  +NG   ++ +   LID Y K G ++
Sbjct: 252 ATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMN 311

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK------------------ 520
           +A++VF+  E K V SWNA++ G+  +G    + E+F  M+K                  
Sbjct: 312 DAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYA 371

Query: 521 -----------------SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
                             G  PN +T + +L AC  +G + +G       +++  L  ++
Sbjct: 372 QRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDN 431

Query: 564 KH-----------YGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGD 610
                        Y  ++D+  +    K A  + +S+P    +V TW  ++G   ++GD
Sbjct: 432 DFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGD 490



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 114/256 (44%), Gaps = 15/256 (5%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +++ YL CG+ + A ++ + +     V W+ ++  + +       + +   M   G +PD
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             TL   + AC  L +   G+ +H  I  NG + N  +   L+ MY + G +++A  VF 
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 486 GTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEM------KKSGVTPNEITFVGVLGA 536
               KG+    SWN+++           +LE+FSEM      K +    + I+ V +L A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPA 268

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC--MVDLLGRAGMLKEAEELIESMPMSPD 594
           C  +  + +     +  I+       +  + C  ++D   + G + +A ++   M    D
Sbjct: 269 CASLKALPQIKEIHSYAIRNGTF---ADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK-D 324

Query: 595 VATWGALLGACKKHGD 610
           V +W A++    + G+
Sbjct: 325 VVSWNAMVTGYTQSGN 340



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 98/372 (26%)

Query: 37  LQKCQSFK---QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L  C S K   Q  +I S  I  G  AD F  + LI           M+ + K+F  +E 
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCG---SMNDAVKVFNVMEF 322

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR------LSV 147
            +   +N M+  Y Q      A  L++ M   N+ +D  T+  +    A R      L  
Sbjct: 323 KDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDA 382

Query: 148 F-----------------------------EGKLIHDHVLKAGFDS------------DV 166
           F                             +G  IH + LK    S            D+
Sbjct: 383 FQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDL 442

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNKM- 223
            V N LI+MY+ C    AAR +FD  P  +  +V+W  ++ GY    +  +A  I+++M 
Sbjct: 443 MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 224 -------PERNIIA-----------------------------------SNSMIVLFGRK 241
                  P    I+                                   +N +I ++ + 
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G+V  A  +F  MPK++ VSW++++S Y  +   +EAL +F  M     + D++  + +L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 302 SACANLTVVKAG 313
            AC++  +V  G
Sbjct: 623 YACSHSGMVDQG 634



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 48/239 (20%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKL 152
           N   +  M+  Y Q      A+ ++  M++    V  + YT   +  A A   ++  GK 
Sbjct: 474 NVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQ 533

Query: 153 IHDHVLKA-GFDSDVY-VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           IH +V +   ++  VY V N LI+MY+ CGD+  AR +FD  P  + VSW S+++GY   
Sbjct: 534 IHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH 593

Query: 211 DNVEEAKFIYNKMP------------------------------------ERNIIASNS- 233
              +EA  I++KM                                     + +++AS   
Sbjct: 594 GRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEH 653

Query: 234 ---MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMYEEALVLFMNM 285
              +I L  R G + +A +  +EMP +   V W AL+S    +   E+ E AL   +NM
Sbjct: 654 YACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNM 712



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           LGT ++  Y+  G   +AL V           WN L+      G  D+++ +   M ++G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
             P+  T    L AC  +     G R  + +I  +  E N      +V +  R G L++A
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCG-RALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 583 EELIESMPMS--PDVATWGALLGA 604
             + + +      DV +W +++ A
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAA 227


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 340/586 (58%), Gaps = 37/586 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F E+PKK++V ++ +I  Y  N +Y +AL++F NM  H +  D      VL A +    
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +  G  +HA  V++G++  + + N LI MY  CG +  A ++ D     D++SWNS+++G
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 370 YLKCGSVEKA-------------------------------------RALFDAMIEKDVV 392
             + G  + A                                     + +F  +  K +V
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 272

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MI+ Y  +   +E + +F++M+ H + PD  ++ SV+ AC  L AL  G+ IH Y+
Sbjct: 273 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 332

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L+ N +L   LIDMY K GC++ A EVF   + + V SW ++I  + MNG    ++
Sbjct: 333 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 392

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +FS M+  G+ P+ I FV VL AC H GL+DEG  +F  M +E ++ P  +H+ CMVDL
Sbjct: 393 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 452

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG + EA   I+ MPM P+   WGALL AC+ + +  +G     +L +L P+  G++
Sbjct: 453 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 512

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLLSNI+A  GRW+DV  VR +M  +G+ K+PG S  E +  +H FLAGD++HPQ  +I 
Sbjct: 513 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 572

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             LD    K+K  GY P+T     D+++E+KE  L  HSEKLAIAF ++  +P +PIRI 
Sbjct: 573 EELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 632

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCH AAK IS+   REI +RD +RFHHF +G CSC D+W
Sbjct: 633 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/459 (30%), Positives = 222/459 (48%), Gaps = 72/459 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  +   N   FN M+R+Y+  ++   A+ ++K M  + +  D+YTYP + +AS+    
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           ++ G  IH  V++ G D +V+V N LI+MY  CG L  A ++ D+ P  D+VSWNS++AG
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 207 YVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                  ++A  +  +M      P+   +AS    V      NV+    +F ++  K LV
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 272

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+ +I+ Y  N M  EA+ +F+ M DH V  D + + SVL AC +L+ +  G  +H   
Sbjct: 273 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 332

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           V+  ++  + L+NALI MY+                               KCG +E AR
Sbjct: 333 VRKRLQPNLLLENALIDMYA-------------------------------KCGCLEYAR 361

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +FD M  +DVVSW++MIS Y  + +  + +SLF  MQ  G+ PD    VSV+SAC+H  
Sbjct: 362 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 421

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-KGVSSWNALI 499
            LD+G++                       Y KL            TEE K V      +
Sbjct: 422 LLDEGRY-----------------------YFKL-----------MTEECKIVPRIEHFV 447

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
               + G A +  E +  +K+  + PNE  +  +L ACR
Sbjct: 448 CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACR 486



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 25/321 (7%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y  CG     R +FD + +K+VV ++ MI  Y  +  +S+ L +F  M  HGI PD
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ A +    L  G  IHA + + GL +N  +G  LI MY K GC+  A  V  
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + V SWN+L+ G A NG  D +LE+  EM+  G+ P+  T   +L A  +  L + 
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 546 GHRHFNSMIQEHRLEPNSK---HYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWG 599
                 S ++E  ++  +K    +  M+ +     M  EA ++   +E   + PD  +  
Sbjct: 257 ------SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 310

Query: 600 ALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSN----IHASKGRWDDVLEVRG 653
           ++L AC       +G R+   +V   LQP+     +LL N    ++A  G  +   EV  
Sbjct: 311 SVLPACGDLSALLLGRRIHEYVVRKRLQPN-----LLLENALIDMYAKCGCLEYAREVFD 365

Query: 654 MMVRRGVVKIPGCSMIEANGI 674
            M  R VV     SMI A G+
Sbjct: 366 QMKFRDVVSWT--SMISAYGM 384



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 42/266 (15%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F    ++  +M L GL  D    + L+   T+      +S+  ++F  L + +   +N M
Sbjct: 219 FDDALEVCKEMELLGLKPDAGTMASLLPAVTNTC-LDNVSFVKEMFMKLANKSLVSWNVM 277

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +  Y+  ++P +A+ ++  M ++ V  D  +   +  A     ++  G+ IH++V++   
Sbjct: 278 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL 337

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY--------------- 207
             ++ + N LI+MYA CG L  AR++FD+    D+VSW S+++ Y               
Sbjct: 338 QPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR 397

Query: 208 -----VNADNV---------------EEAKFIYNKMPERNIIASN-----SMIVLFGRKG 242
                +N D++               +E ++ +  M E   I         M+ L GR G
Sbjct: 398 MQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAG 457

Query: 243 NVAEACRLFKEMP-KKDLVSWSALIS 267
            V EA    K+MP + +   W AL+S
Sbjct: 458 QVDEAYGFIKQMPMEPNERVWGALLS 483


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/794 (32%), Positives = 409/794 (51%), Gaps = 76/794 (9%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
            Q+ +  + TGL  D F A+ L+          E    F   A     N   +N MM A+
Sbjct: 120 VQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAA--RDRNAVSWNGMMSAF 177

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           ++ +    A+ L+  M+ + V  + + +  +  A      +  G+ +H  V++ G+D DV
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER 226
           +  N L++MY+  GD+  A  +F + P  D+VSWN+ ++G V   + + A  +  +M   
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 227 NIIASN-----------------------------------------SMIVLFGRKGNVA 245
            ++ +                                          +++ ++ + G + 
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +A ++F+ +P+KDL+ W+ALIS       + E+L LF  M      ++   + +VL + A
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
           +L  +   T VHALA KIG     ++ N LI                             
Sbjct: 418 SLEAISDTTQVHALAEKIGFLSDSHVVNGLI----------------------------- 448

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
               Y KC  +  A  +F+     +++++++MI+  +Q D   + + LFMEM   G+ PD
Sbjct: 449 --DSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
              L S+++AC  L A +QGK +HA++ K     +   G  L+  Y K G +++A   F 
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
           G  +KGV SW+A+I G A +G   ++L++F  M    + PN IT   VL AC H GLVDE
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
              +F+SM +   ++   +HY CM+DLLGRAG L +A EL+ SMP   + A WGALL A 
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + H D E+G+    KL  L+P+  G HVLL+N +AS G WD+V +VR +M    V K P 
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPA 746

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF-DIDQEEKE 724
            S +E    +H F+ GD++HP+  +I   L+E+   +   GY P+ LEV   D+D+ EKE
Sbjct: 747 MSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPN-LEVDLHDVDKSEKE 805

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSE+LA+AF LI+     PIR+ KNLRIC DCH A KFIS+   REI++RD +RF
Sbjct: 806 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 865

Query: 785 HHFKHGSCSCMDFW 798
           HHF  G+CSC D+W
Sbjct: 866 HHFSDGACSCGDYW 879



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 173/382 (45%), Gaps = 37/382 (9%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N ++  + +      A R+F E P    VSWS+L++ Y  N +  EAL  F  M    V 
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +E  +  VL    +  +   G  VHA+AV  G+   I + NAL+ MY   G +  A ++
Sbjct: 101 CNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 352 FD-AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           FD A  + + +SWN M+S ++K                               +D+ S+ 
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVK-------------------------------NDRCSDA 186

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + LF EM   G+RP+E     V++ACT    L+ G+ +HA + + G   +      L+DM
Sbjct: 187 VELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDM 246

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y KLG +  A  VF    +  V SWNA I G  ++G    +LE+  +MK SG+ PN  T 
Sbjct: 247 YSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 531 VGVL-GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
             +L              R  +  + +   + +      +VD+  + G+L +A ++ E +
Sbjct: 307 SSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI 366

Query: 590 PMSPDVATWGALLGACKKHGDH 611
           P   D+  W AL+  C   G H
Sbjct: 367 P-RKDLLLWNALISGCSHGGCH 387



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/644 (21%), Positives = 274/644 (42%), Gaps = 85/644 (13%)

Query: 29  NLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           ++S L T     QS      I + ++ +GL+   F    L  +S   LP      + ++F
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLL-HAFRNHLLSFYSKCRLP----GSARRVF 60

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
                P    +++++ AY    +P++A+  ++ M    V  + +  P++ + +       
Sbjct: 61  DETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP---DAG 117

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNSILAGY 207
            G  +H   +  G   D++V N L+ MY   G +  AR++FDE+    + VSWN +++ +
Sbjct: 118 LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 208 VNADNVEEAKFIYNKMP---------------------------------------ERNI 228
           V  D   +A  ++ +M                                        ++++
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             +N+++ ++ + G++  A  +F ++PK D+VSW+A IS    +   + AL L + M   
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGT--SVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            ++ +   + S+L ACA            +H   +K   +    +  AL+ MY+  G + 
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A K+F+     DL+ WN++ISG    G                                
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGC------------------------------- 386

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E+LSLF  M+  G   +  TL +V+ +   L A+     +HA   K G   +S +   
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LID Y K  C+  A +VF       + ++ ++I   +     + ++++F EM + G+ P+
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
                 +L AC  +   ++G +  ++ + + +   +      +V    + G +++A+   
Sbjct: 507 PFVLSSLLNACASLSAYEQG-KQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDH 628
             +P    V +W A++G   +HG  +    V R++V+  + P+H
Sbjct: 566 SGLP-DKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNH 608


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 362/604 (59%), Gaps = 38/604 (6%)

Query: 201 NSILAGYVNADNVEEAKFIY----NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           +++L    + + + E K I+    N     +++  N+++ L+ + G++  A +LF EM  
Sbjct: 19  HTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSS 78

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL--TVVKAGT 314
           +D+V+W+ALI+ Y Q++  ++AL+L   M+   +  ++  + S+L A + +  T V  G 
Sbjct: 79  RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +H L ++ G +  + +  A++ MY+ C             H+L                
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARC-------------HHL---------------- 169

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             E+A+ +FD M+ K+ VSW+ +I+GYA+  Q  +   LF  M    ++P   T  SV+ 
Sbjct: 170 --EEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLC 227

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  + +L+QGKW+HA + K G K+ + +G TL+DMY K G +++A +VF    ++ V S
Sbjct: 228 ACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVS 287

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN+++ G++ +GL   +L+ F EM ++ + PN+ITF+ VL AC H GL+DEG RH+  M+
Sbjct: 288 WNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEG-RHYFDMM 346

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +++ +EP   HY  MVDLLGRAG L  A + I  MP+ P  A WGALLGAC+ H + E+G
Sbjct: 347 KKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELG 406

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
                 + EL   + G HVLL NI+A  GRW+D  +VR MM   GV K P CS +E    
Sbjct: 407 GYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENE 466

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +H F+A D  HPQ  EI NM ++++ K+K  GY PD+  V   +DQ+E+E  L  HSEKL
Sbjct: 467 VHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKL 526

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AF L+   P + IRI KN+RIC DCH+A KF+S+  +REI+VRD +RFHHF  G+CSC
Sbjct: 527 ALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSC 586

Query: 795 MDFW 798
            D+W
Sbjct: 587 EDYW 590



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 195/424 (45%), Gaps = 74/424 (17%)

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L +    NN G     + LL + + L   + EGK+IH  +L + F  D+ + NTL+N+YA
Sbjct: 3   LIRQQCKNNAGAREICHTLLKRCTHLN-KLNEGKIIHALLLNSRFRDDLVMQNTLLNLYA 61

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER----- 226
            CGDL  ARKLFDE    D+V+W +++ GY   D  ++A  +  +M      P +     
Sbjct: 62  KCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLAS 121

Query: 227 ------------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                                         N+  S +++ ++ R  ++ EA  +F  M  
Sbjct: 122 LLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVS 181

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           K+ VSW+ALI+ Y +    ++A  LF NM+   V        SVL ACA++  ++ G  V
Sbjct: 182 KNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWV 241

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           HAL +K G +    + N L+ MY+  G I  A+K+FD     D++SWNSM+         
Sbjct: 242 HALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSML--------- 292

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
                                 +GY+QH      L  F EM    I P++ T + V++AC
Sbjct: 293 ----------------------TGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTAC 330

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-W 495
           +H   LD+G+     ++K  ++       T++D+  + G +D A++       K  ++ W
Sbjct: 331 SHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVW 390

Query: 496 NALI 499
            AL+
Sbjct: 391 GALL 394



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 148/310 (47%), Gaps = 41/310 (13%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLA 138
           ++ Y+ K+F  + S +   +  ++  Y Q + PQ A+ L   ML   +  + +T   LL 
Sbjct: 65  DLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLK 124

Query: 139 QASAL-RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            AS +    V +G+ +H   L+ G+DS+VYV+  +++MYA C  L  A+ +FD     + 
Sbjct: 125 AASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNE 184

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI----------------------------- 228
           VSWN+++AGY      ++A  +++ M   N+                             
Sbjct: 185 VSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHAL 244

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                        N+++ ++ + G++ +A ++F  + K+D+VSW+++++ Y Q+ + + A
Sbjct: 245 MIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVA 304

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L  F  M+  R+  +++  + VL+AC++  ++  G     +  K  +E  I+    ++ +
Sbjct: 305 LQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDL 364

Query: 339 YSSCGEITTA 348
               G +  A
Sbjct: 365 LGRAGHLDRA 374



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 40/220 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  + S N   +N ++  Y ++    +A CL+  ML  NV   ++TY  +  A A   S
Sbjct: 175 IFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGS 234

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H  ++K G     +V NTL++MYA  G +  A+K+FD     D+VSWNS+L G
Sbjct: 235 LEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTG 294

Query: 207 Y-----------------------------------VNADNVEEAKFIYNKMPERNIIAS 231
           Y                                    +A  ++E +  ++ M + N+   
Sbjct: 295 YSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQ 354

Query: 232 NS----MIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
            S    M+ L GR G++  A +   EMP K   + W AL+
Sbjct: 355 ISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/721 (34%), Positives = 401/721 (55%), Gaps = 63/721 (8%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           ++  TY  + Q  A   S+ +GK +H  +       D  +   L++ YA CGDL   R++
Sbjct: 97  LETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE-A 247
           FD     ++  WN +++ Y    + +E+  ++  M E+ I            +G   E A
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------EGKRPESA 204

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             LF ++  +D++SW+++IS Y  N + E  L ++  M+   + VD   ++SVL  CAN 
Sbjct: 205 SELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANS 264

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +  G +VH+LA+K   E  IN  N L+ MYS CG++  A ++F+     +++SW SMI
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 368 SGYLKCGSVEKARALFDAM----IEKDVVSWSTMI-----SG------------------ 400
           +GY + G  + A  L   M    ++ DVV+ ++++     SG                  
Sbjct: 325 AGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMA 384

Query: 401 ------------YAQHDQFSETLSLFMEMQHHGI----------RPDEATLVSVISACTH 438
                       YA+        S+F  M    I          +PD  T+  ++ AC  
Sbjct: 385 SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACAS 444

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL++GK IH YI +NG   +  +   L+D+Y+K G +  A  +F     K + SW  +
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVM 504

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+ M+G  ++++  F+EM+ +G+ P+E++F+ +L AC H GL+++G R F  M  +  
Sbjct: 505 IAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP  +HY CMVDLL R G L +A + IE++P++PD   WGALL  C+ + D E+ E+V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++ EL+P++ G++VLL+NI+A   + ++V  +R  + ++G+ K PGCS IE  G ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLF 684

Query: 679 LAGDR-THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           ++G+  +HP   +I+++L +M +K+K EGY P T     + D+ +KE  L  HSEKLA+A
Sbjct: 685 VSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+T+ P   IR+ KNLR+C DCH  AKF+S+   REIV+RD +RFHHFK G CSC  F
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGF 804

Query: 798 W 798
           W
Sbjct: 805 W 805



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 57/426 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLLAQASALRLSVFEGKLIHDH 156
           +N+M+  Y+   + ++ + +YK M+   + VD  T    L+  A++  LS+  GK +H  
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSL--GKAVHSL 276

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K+ F+  +  +NTL++MY+ CGDL  A ++F++    ++VSW S++AGY      + A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 217 KFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS----WSALISC 268
             +  +M +     +++A  S++    R G++     +   +   ++ S     +AL+  
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 396

Query: 269 YEQNEMYEEALVLFMNM-----IDHRVMVDEV-----VVVSVLSACANLTVVKAGTSVHA 318
           Y +    E A  +F  M     I    MV E+      +  +L ACA+L+ ++ G  +H 
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHG 456

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             ++ G     ++ NAL+ +Y  CG +  A  LFD   + DL+SW  MI+GY        
Sbjct: 457 YILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGY-------- 508

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                                    H   +E ++ F EM+  GI PDE + +S++ AC+H
Sbjct: 509 -----------------------GMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 439 LVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSW 495
              L+QG W   YI KN   I   L     ++D+  + G +  A +           + W
Sbjct: 546 SGLLEQG-WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 604

Query: 496 NALIIG 501
            AL+ G
Sbjct: 605 GALLCG 610



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 37/391 (9%)

Query: 67  RLIKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           R I FS  LL       ++  + ++F  +   N   + +M+  Y +      AI L + M
Sbjct: 284 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQM 343

Query: 123 LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182
               V +D      +  A A   S+  GK +HD++      S+++V N L++MYA CG +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 403

Query: 183 SAARKLFDESPVLDLVSWNS--------------ILAGYVNADNVEEAKFIYNKMPERNI 228
             A  +F    V D++SWN+              IL    +   +E  K I+  +  RN 
Sbjct: 404 EGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYIL-RNG 462

Query: 229 IAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            +S     N+++ L+ + G +  A  LF  +P KDLVSW+ +I+ Y  +    EA+  F 
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFN 522

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSC 342
            M D  +  DEV  +S+L AC++  +++ G    + +     IE  +     ++ + S  
Sbjct: 523 EMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRT 582

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCG-----SVEKARALFDAMIE---KDVVSW 394
           G ++ A K  +       I+ ++ I G L CG      +E A  + + + E   ++   +
Sbjct: 583 GNLSKAYKFIETLP----IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYY 638

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
             + + YA+ ++  E   +  ++   G+R +
Sbjct: 639 VLLANIYAEAEKREEVKRMREKIGKKGLRKN 669



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 55/274 (20%)

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           I+  V  ++  I  + Q       + L    Q   +  +  T  SV+  C  L +L  GK
Sbjct: 62  IDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGK 119

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE------------------ 488
            +H+ I+ N + ++  LG  L+  Y   G +     VF   E                  
Sbjct: 120 KVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 489 -------------EKGVS--------------------SWNALIIGFAMNGLADKSLEMF 515
                        EKG+                     SWN++I G+  NGL ++ L ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            +M   G+  +  T + VL  C + G +  G +  +S+  +   E        ++D+  +
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSK 298

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            G L  A  + E M    +V +W +++    + G
Sbjct: 299 CGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDG 331


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/764 (33%), Positives = 434/764 (56%), Gaps = 50/764 (6%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
           TQ  ++++ +G   D + +++LI   ++   F +      I   +  P  + F++++ A 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADL---ILQSIPDPTVYSFSSLIYAL 91

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSD 165
            +  +  Q+I ++  M ++ +  D +  P L +  A  LS F+ GK IH     +G D D
Sbjct: 92  TKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCA-ELSAFKAGKQIHCVACVSGLDMD 150

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
            +V  +L +MY  CG +  ARK+FD                               +M E
Sbjct: 151 AFVQGSLFHMYMRCGRMGDARKVFD-------------------------------RMSE 179

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISCYEQNEMYEEALVL 281
           ++++  ++++  + RKG + E  R+  EM K     ++VSW+ ++S + ++  ++EA+++
Sbjct: 180 KDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIM 239

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI---ECYINLQNALIHM 338
           F  M       D+V V SVL +  +   +  G  +H   +K G+   +C I+   A++ M
Sbjct: 240 FQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVIS---AMLDM 296

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF----DAMIEKDVVSW 394
           Y   G +    KLFD    ++    N+ I+G  + G V+KA  +F    +  +E +VVSW
Sbjct: 297 YGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSW 356

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           +++I+G AQ+ +  E L LF EMQ  G++P+  T+ S++ AC ++ AL  G+  H +  +
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             L  +  +G+ LIDMY K G +  +  VF+    K +  WN+L+ G++M+G A + + +
Sbjct: 417 VHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSI 476

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  + ++ + P+ I+F  +L AC  +GL DEG ++FN M +E+ ++P  +HY CMV+LLG
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLG 536

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG L+EA +LI+ +P  PD   WGALL +C+   + ++ E   +KL  L+P++ G +VL
Sbjct: 537 RAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVL 596

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           +SNI+A+KG W +V  +R  M   G+ K PGCS I+    ++  LA D++HPQI++I   
Sbjct: 597 MSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEK 656

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           +DE++++++  G+ P+      D++++E+E  L+ HSEKLA+ FGL+      P++++KN
Sbjct: 657 MDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKN 716

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LRIC DCH   KFIS    REI +RD +RFHHFK G CSC DFW
Sbjct: 717 LRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/592 (40%), Positives = 346/592 (58%), Gaps = 31/592 (5%)

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y     ++EA   +N MP RNI++ N +I    + G++  A ++F EM ++++ +W+A++
Sbjct: 2   YFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMV 61

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S   Q E  E  L LF  M +   + DE  + SVL  CA L    AG  VHA  +K G E
Sbjct: 62  SGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYE 121

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + ++L HMY                               +K GS+ +   +  AM
Sbjct: 122 FNLVVGSSLAHMY-------------------------------MKSGSLGEGEKVIKAM 150

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             ++VV+W+T+I+G AQ+  F   L L+  M+  G+RPD+ TLVSVIS+   L  L QG+
Sbjct: 151 RIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQ 210

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA   K G      + ++LI MY K GC++++++     E      W+++I  +  +G
Sbjct: 211 QIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHG 270

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             ++++ +F +M++ G+  N++TF+ +L AC H GL ++G   F  M++++ L+P  +HY
Sbjct: 271 RGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHY 330

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            C+VDLLGR+G L EAE +I SMP+  DV  W  LL AC+ H + +M  R   +++ L P
Sbjct: 331 TCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNP 390

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
                +VLLSNIHAS  RW DV +VR  M  R V K PG S +E    + +F  GD++HP
Sbjct: 391 QDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHP 450

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
              EID  L E+ +++KL GY PDT  V  D D EEKE +L  HSEKLAIAFGL+ I P 
Sbjct: 451 MSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPG 510

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +PIR+MKNLRIC+DCH A K IS   +REI+VRD  RFHHFKHG CSC D+W
Sbjct: 511 SPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 170/377 (45%), Gaps = 74/377 (19%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           ++  +N LIN +   GDL +A K+FDE    ++ +WN++++G +  +  E   F++ +M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 225 ER---------------------------------------NIIASNSMIVLFGRKGNVA 245
           E                                        N++  +S+  ++ + G++ 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           E  ++ K M  +++V+W+ LI+   QN  +E  L L+  M    +  D++ +VSV+S+ A
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLISWN 364
            L  +  G  +HA A+K G    + + ++LI MYS CG +  + K L D  H  D + W+
Sbjct: 202 ELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHP-DSVLWS 260

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           SMI+ Y                             G+  H +  E + LF +M+  G+  
Sbjct: 261 SMIAAY-----------------------------GF--HGRGEEAVHLFEQMEQEGLGG 289

Query: 425 DEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           ++ T +S++ AC+H    ++G  +    + K GLK      T ++D+  + GC+D A  +
Sbjct: 290 NDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAM 349

Query: 484 FHGTE-EKGVSSWNALI 499
                 E  V  W  L+
Sbjct: 350 IRSMPLEADVVIWKTLL 366



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 147/331 (44%), Gaps = 41/331 (12%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + K+F  +   N   +N M+   IQ    +  + L++ M       D +T   + +
Sbjct: 38  DLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLR 97

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   + + GK +H +VLK G++ ++ V ++L +MY   G L    K+     + ++V+
Sbjct: 98  GCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVA 157

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PER----NIIAS------------------ 231
           WN+++AG     + E    +YN M      P++    ++I+S                  
Sbjct: 158 WNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAI 217

Query: 232 -----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                      +S+I ++ + G + ++ +   +    D V WS++I+ Y  +   EEA+ 
Sbjct: 218 KAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVH 277

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMY 339
           LF  M    +  ++V  +S+L AC++  + + G     L V K G++  +     ++ + 
Sbjct: 278 LFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLL 337

Query: 340 SSCGEITTAEKLFDA-GHNLDLISWNSMISG 369
              G +  AE +  +     D++ W +++S 
Sbjct: 338 GRSGCLDEAEAMIRSMPLEADVVIWKTLLSA 368



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 12/228 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+   +   N   +NT++    Q    +  + LY +M  + +  D  T   +  +SA   
Sbjct: 145 KVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELA 204

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++F+G+ IH   +KAG +S V V ++LI+MY+ CG L  + K   +    D V W+S++A
Sbjct: 205 TLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIA 264

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKK---- 257
            Y      EEA  ++ +M +  +  ++    S++      G   +    FK M +K    
Sbjct: 265 AYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLK 324

Query: 258 -DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             L  ++ ++    ++   +EA  +  +M    +  D V+  ++LSAC
Sbjct: 325 PRLEHYTCVVDLLGRSGCLDEAEAMIRSM---PLEADVVIWKTLLSAC 369


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/582 (39%), Positives = 354/582 (60%), Gaps = 18/582 (3%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           SN++   +   G +A A +LF E+P   KD V W+ L+S + +  +   ++ LF+ M   
Sbjct: 46  SNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRK 105

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           RV +D V +V +   CA L  ++ G   H +AVK+G    + + NAL+ MY  CG ++  
Sbjct: 106 RVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEV 165

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           +++F A     ++SW  ++   +K   +++ R +FD M E++VV+W+ M++GY       
Sbjct: 166 KRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTR 225

Query: 409 ETLSLFMEMQH---HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS---- 461
           E L L  EM     HG+  +  TL S++SAC     L  G+W+H Y  K  + +      
Sbjct: 226 EVLELLAEMVFRCGHGL--NFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETY 283

Query: 462 ---ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
              ++GT L+DMY K G +D++++VF    ++ V +WNAL  G AM+G     ++MF EM
Sbjct: 284 DGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEM 343

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +  V P+++TF  +L AC H+G+VDEG R F+S+ Q + LEP   HY CMVD+LGRAG 
Sbjct: 344 VRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSL-QFYGLEPKVDHYACMVDILGRAGR 401

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           ++EAE L+  MP+ P+    G+LLG+C  HG  E+ ER+ R+L+++ P H  + +L+SN+
Sbjct: 402 IEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNM 461

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           + ++GR D    +RG +  RG+ KIPG S I  N  +H F +GDR+HP+  E+   L+E+
Sbjct: 462 YVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEV 521

Query: 699 AKKLKLEGYAPDT--LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
            ++++  GY PD   L    + D EEKE  L  HSEKLA+ FGL+   P  P+ + KNLR
Sbjct: 522 IERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLR 581

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCH+A K +S+ +DREI++RDR+RFH FK GSCSC D+W
Sbjct: 582 ICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/478 (21%), Positives = 193/478 (40%), Gaps = 112/478 (23%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T++ ++ +  +   ++ L+  M    V +D+ +   L    A    +  G+  H   +
Sbjct: 79  WTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAV 138

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K GF + V V N L++MY  CG +S  +++F       +VSW  +L   V  + ++  + 
Sbjct: 139 KMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGR- 197

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                                          +F EMP++++V+W+ +++ Y       E 
Sbjct: 198 ------------------------------EVFDEMPERNVVAWTLMVAGYLGAGFTREV 227

Query: 279 LVLFMNMI---DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI-----ECY-- 328
           L L   M+    H   ++ V + S+LSACA    +  G  VH  A+K  +     E Y  
Sbjct: 228 LELLAEMVFRCGHG--LNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDG 285

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + +  AL+ MY+ CG I ++ K+F      ++++WN                ALF     
Sbjct: 286 VMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWN----------------ALF----- 324

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
                     SG A H +    + +F EM    ++PD+ T  +++SAC+HL  +D+G   
Sbjct: 325 ----------SGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRC 373

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
              ++  GL+        ++D+  + G ++ A E+                         
Sbjct: 374 FHSLQFYGLEPKVDHYACMVDILGRAGRIEEA-EIL------------------------ 408

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
                    M++  V PNE+    +LG+C   G ++   R    +IQ   + P    Y
Sbjct: 409 ---------MREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQ---MSPGHTEY 454



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 149/378 (39%), Gaps = 71/378 (18%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKLFDAGHN 357
           +L   A+ + +  G  +HA+    G++      L NAL   Y+S GEI TA+KLFD    
Sbjct: 12  LLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDE--- 68

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                                       + +KD V W+T++S +++      ++ LF+EM
Sbjct: 69  --------------------------IPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEM 102

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +   +  D  +LV +   C  L  L  G+  H    K G   +  +   L+DMY K G V
Sbjct: 103 RRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFV 162

Query: 478 DNALEVFHGTEEKGVSSWNA-------------------------------LIIGFAMNG 506
                +F   EEK V SW                                 ++ G+   G
Sbjct: 163 SEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAG 222

Query: 507 LADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSK 564
              + LE+ +EM  + G   N +T   +L AC   G LV     H  ++ +   +     
Sbjct: 223 FTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEET 282

Query: 565 HYGCM-----VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           + G M     VD+  + G +  + ++   M    +V TW AL      HG   M   +  
Sbjct: 283 YDGVMVGTALVDMYAKCGNIDSSIKVFRLM-RKRNVVTWNALFSGLAMHGKGRMVIDMFP 341

Query: 620 KLV-ELQPDHDGFHVLLS 636
           ++V E++PD   F  LLS
Sbjct: 342 EMVREVKPDDLTFTALLS 359



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 121/288 (42%), Gaps = 37/288 (12%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC    +  +I   +    +++ T     L+K+         +    ++F  +   N   
Sbjct: 158 KCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEG-------LKRGREVFDEMPERNVVA 210

Query: 99  FNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           +  M+  Y+     ++ +  L +++     G++  T   +  A A   ++  G+ +H + 
Sbjct: 211 WTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYA 270

Query: 158 LKAG--------FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           LK          +D  V V   L++MYA CG++ ++ K+F      ++V+WN++ +G   
Sbjct: 271 LKKAMMMGEEETYDG-VMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAM 329

Query: 210 ADNVEEAKFIYNKMPE--RNI----IASNSMIVLFGRKGNVAEACRLFKEM------PKK 257
                + + + +  PE  R +    +   +++      G V E  R F  +      PK 
Sbjct: 330 HG---KGRMVIDMFPEMVREVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEPKV 386

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           D   ++ ++    +    EEA +L   M    V  +EVV+ S+L +C+
Sbjct: 387 D--HYACMVDILGRAGRIEEAEILMREM---PVPPNEVVLGSLLGSCS 429


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 341/586 (58%), Gaps = 37/586 (6%)

Query: 250  LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
            +F E+PKK++V ++ +I  Y  N +Y +AL++F NM  H +  D      VL A +    
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 310  VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +  G  +HA  V++G++  + + N LI MY  CG +  A ++ D     D++SWNS+++G
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 370  YLKCGSVEKA-------------------------------------RALFDAMIEKDVV 392
              + G  + A                                     + +F  +  K +V
Sbjct: 1202 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 1261

Query: 393  SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
            SW+ MI+ Y  +   +E + +F++M+ H + PD  ++ SV+ AC  L AL  G+ IH Y+
Sbjct: 1262 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 1321

Query: 453  RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
             +  L+ N +L   LIDMY K GC++ A EVF   + + V SW ++I  + MNG    ++
Sbjct: 1322 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 1381

Query: 513  EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
             +FS M+  G+ P+ I FV VL AC H GL+DEG  +F  M +E ++ P  +H+ CMVDL
Sbjct: 1382 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 1441

Query: 573  LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
            LGRAG + EA   I+ MPM P+   WGALL AC+ + +  +G     +L +L P+  G++
Sbjct: 1442 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 1501

Query: 633  VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
            VLLSNI+A  GRW+DV  VR +M  +G+ K+PG S  E +  +H FLAGD++HPQ  +I 
Sbjct: 1502 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 1561

Query: 693  NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
              LD +  K+K  GY P+T     D+++E+KE  L  HSEKLAIAF ++  +P +PIRI 
Sbjct: 1562 EELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 1621

Query: 753  KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR+C DCH AAK IS+   REI +RD +RFHHF +G CSC D+W
Sbjct: 1622 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 142/459 (30%), Positives = 222/459 (48%), Gaps = 72/459 (15%)

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
            IF  +   N   FN M+R+Y+  ++   A+ ++K M  + +  D+YTYP + +AS+    
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 147  VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            ++ G  IH  V++ G D +V+V N LI+MY  CG L  A ++ DZ P  D+VSWNS++AG
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 207  YVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                   ++A  +  +M      P+   +AS    V      NV+    +F ++  K LV
Sbjct: 1202 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 1261

Query: 261  SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
            SW+ +I+ Y  N M  EA+ +F+ M DH V  D + + SVL AC +L+ +  G  +H   
Sbjct: 1262 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 1321

Query: 321  VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            V+  ++  + L+NALI MY+                               KCG +E AR
Sbjct: 1322 VRKRLQPNLLLENALIDMYA-------------------------------KCGCLEYAR 1350

Query: 381  ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
             +FD M  +DVVSW++MIS Y  + +  + +SLF  MQ  G+ PD    VSV+SAC+H  
Sbjct: 1351 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 1410

Query: 441  ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-KGVSSWNALI 499
             LD+G++                       Y KL            TEE K V      +
Sbjct: 1411 LLDEGRY-----------------------YFKL-----------MTEECKIVPRIEHFV 1436

Query: 500  IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
                + G A +  E +  +K+  + PNE  +  +L ACR
Sbjct: 1437 CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACR 1475



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 25/321 (7%)

Query: 366  MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
            ++  Y  CG     R +FD + +K+VV ++ MI  Y  +  +S+ L +F  M  HGI PD
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 426  EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
              T   V+ A +    L  G  IHA + + GL +N  +G  LI MY K GC+  A  V  
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 486  GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
                + V SWN+L+ G A NG  D +LE+  EM+  G+ P+  T   +L A  +  L + 
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 546  GHRHFNSMIQEHRLEPNSK---HYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWG 599
                  S ++E  ++  +K    +  M+ +     M  EA ++   +E   + PD  +  
Sbjct: 1246 ------SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 1299

Query: 600  ALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSN----IHASKGRWDDVLEVRG 653
            ++L AC       +G R+   +V   LQP+     +LL N    ++A  G  +   EV  
Sbjct: 1300 SVLPACGDLSALLLGRRIHEYVVRKRLQPN-----LLLENALIDMYAKCGCLEYAREVFD 1354

Query: 654  MMVRRGVVKIPGCSMIEANGI 674
             M  R VV     SMI A G+
Sbjct: 1355 QMKFRDVVSW--TSMISAYGM 1373



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 42/266 (15%)

Query: 43   FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            F    ++  +M L GL  D    + L+   T+      +S+  ++F  L + +   +N M
Sbjct: 1208 FDDALEVCKEMELLGLKPDAGTMASLLPAVTNTC-LDNVSFVKEMFMKLANKSLVSWNVM 1266

Query: 103  MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
            +  Y+  ++P +A+ ++  M ++ V  D  +   +  A     ++  G+ IH++V++   
Sbjct: 1267 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL 1326

Query: 163  DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY--------------- 207
              ++ + N LI+MYA CG L  AR++FD+    D+VSW S+++ Y               
Sbjct: 1327 QPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR 1386

Query: 208  -----VNADNV---------------EEAKFIYNKMPERNIIASN-----SMIVLFGRKG 242
                 +N D++               +E ++ +  M E   I         M+ L GR G
Sbjct: 1387 MQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAG 1446

Query: 243  NVAEACRLFKEMP-KKDLVSWSALIS 267
             V EA    K+MP + +   W AL+S
Sbjct: 1447 QVDEAYGFIKQMPMEPNERVWGALLS 1472


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 336/554 (60%), Gaps = 2/554 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACA 305
           A  ++  +    + + + +I C+ + ++   ++ L+ +M    V   ++  +  VL AC+
Sbjct: 85  ALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACS 144

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD-AGHNLDLISWN 364
           N   ++ G  V    +K+G    + ++NALIH+Y +C  + +A+++FD    + D++SWN
Sbjct: 145 NAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWN 204

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           SMI G+++ G +  A+ LF  M EKDV+SW T+ISG  Q+ +  + L  F E+    +RP
Sbjct: 205 SMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRP 264

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +EA LVS+++A   L  L+ GK IH+        + + LGT L+DMY K GC+D +  +F
Sbjct: 265 NEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLF 324

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               EK   SWN +I G A +GL  ++L +F +    G  P  +TF+GVL AC   GLV 
Sbjct: 325 DRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVS 384

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG   F  M   + +EP  +HYGCMVDLL RAG + +A E+I  MP  PD   W ++LG+
Sbjct: 385 EGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGS 444

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ HG  E+GE +G KL+++ P H+G +V L+ I A   +W+DV +VR +M  R   KI 
Sbjct: 445 CQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIA 504

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S+IEA G +H F+AGD+ H +  EI  ML+ M  ++   GY+ +   V  DI++EEKE
Sbjct: 505 GWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKE 564

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             +  HSE+LAIAFGL+     + IRI+KNLR+C DCH  +K IS  F+REI+VRD  RF
Sbjct: 565 NAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRF 624

Query: 785 HHFKHGSCSCMDFW 798
           HHFK G CSC D+W
Sbjct: 625 HHFKKGICSCQDYW 638



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 148/580 (25%), Positives = 253/580 (43%), Gaps = 113/580 (19%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKF---STDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           Q  Q  +++++ GL  D    S L+ F   S+  LP     Y+  I+  +  P  F  N 
Sbjct: 46  QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLP---SDYALSIYNSISHPTVFATNN 102

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKA 160
           M+R +++ ++P+ +I LY  M  + V   N +T   + QA +   ++ EG  +  HV+K 
Sbjct: 103 MIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKL 162

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           GF  DV+V N LI++Y  C                                 VE AK ++
Sbjct: 163 GFVKDVFVRNALIHLYCTCC-------------------------------RVESAKQVF 191

Query: 221 NKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +++P  R++++ NSMIV F R G ++ A +LF EMP+KD++SW  +IS   QN   E+AL
Sbjct: 192 DEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKAL 251

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             F  + + ++  +E ++VS+L+A A L  ++ G  +H++A  +      +L  AL+ MY
Sbjct: 252 DYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMY 311

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           + CG I  +  LFD     D  SWN MI                                
Sbjct: 312 AKCGCIDESRFLFDRMPEKDKWSWNVMI-------------------------------C 340

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           G A H    E L+LF +    G  P   T + V++AC+    + +GK  H +        
Sbjct: 341 GLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGK--HFF-------- 390

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
                  + D Y              G E + +  +  ++   +  G    ++EM + M 
Sbjct: 391 -----KLMTDTY--------------GIEPE-MEHYGCMVDLLSRAGFVYDAVEMINRMP 430

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM 578
                P+ + +  VLG+C+  G ++ G    N +IQ   ++P ++ HY  +  +  R   
Sbjct: 431 ---APPDPVLWASVLGSCQVHGFIELGEEIGNKLIQ---MDPTHNGHYVQLARIFARLRK 484

Query: 579 LKEAEELIESMPM--SPDVATWGALLGACKKH----GDHE 612
            ++  ++   M    S  +A W  +    + H    GD E
Sbjct: 485 WEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKE 524



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/465 (20%), Positives = 167/465 (35%), Gaps = 85/465 (18%)

Query: 24  FKPTINLSILETHLQKCQ---SFKQFTQILSQMILTGLIADTFAASRLIKF--------- 71
           F    N   L   LQ C    + ++  Q+ + +I  G + D F  + LI           
Sbjct: 127 FVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVES 186

Query: 72  ----------STDLLPFIEMSYSF----------KIFAFLESPNGFIFNTMMRAYIQRNV 111
                     S D++ +  M   F          K+F  +   +   + T++   +Q   
Sbjct: 187 AKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGE 246

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
            ++A+  +K +    +  +      L  A+A   ++  GK IH       F     +   
Sbjct: 247 LEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTA 306

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           L++MYA CG +  +R LFD  P  D  SWN ++ G       +EA  ++ K   +     
Sbjct: 307 LVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPV 366

Query: 232 N----SMIVLFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEALVLF 282
           N     ++    R G V+E    FK M      + ++  +  ++    +     +A+ + 
Sbjct: 367 NVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMI 426

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M       D V+  SVL +C           VH   +++G E    + N LI M    
Sbjct: 427 NRM---PAPPDPVLWASVLGSC----------QVHGF-IELGEE----IGNKLIQM---- 464

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM----- 397
                     D  HN   +    + +   K   V K R L        +  WS +     
Sbjct: 465 ----------DPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGR 514

Query: 398 ----ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
               ++G  +H++ +E   +   M   G+R   A   + +S+  H
Sbjct: 515 VHRFVAGDKEHERTTEIYKMLEIM---GVRIAAAGYSANVSSVLH 556


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/744 (33%), Positives = 401/744 (53%), Gaps = 60/744 (8%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S ++F  L  P    + +++R Y    +P +++  +  ML + +  D+  +P + +A A+
Sbjct: 61  SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS-AARKLFDESPVLD------ 196
            + +  G+ +H ++++ G D D+Y  N L+NMY+    L  + R+    S VLD      
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERT 180

Query: 197 -LVSWNSILAGY-------VNADNVE--------EAKFI---YNKMPE-RNIIASN--SM 234
             V   S+L G        + A N +        EA+ +   Y    E R + A N    
Sbjct: 181 RSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQ 240

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I       +V    ++F+ MP+KDLVSW+ +I+   +N +Y E L +   M    +  D 
Sbjct: 241 IKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDS 300

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             + SVL   A    +  G  +H  +++ G++  + + ++LI MY+              
Sbjct: 301 FTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYA-------------- 346

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            KC  V  +  +F  + E+D +SW+++I+G  Q+  F E L  F
Sbjct: 347 -----------------KCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFF 389

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M    I+P   +  S++ AC HL  L  GK +H YI +NG   N  + ++L+DMY K 
Sbjct: 390 RQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKC 449

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A ++F     + + SW A+I+G A++G A  ++E+F +MK  G+ PN + F+ VL
Sbjct: 450 GNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVL 509

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLVDE  ++FNSM  +  + P  +HY  + DLLGRAG L+EA + I  MP+ P 
Sbjct: 510 TACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPT 569

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + W  LL AC+ H + +M E+V  +++E+ P + G ++LL+NI+++  RW +  + R  
Sbjct: 570 GSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRAS 629

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           + R G+ K P CS IE    ++ F+AGD +HP   +I   ++ + + ++ EGY PDT EV
Sbjct: 630 LRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEV 689

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+++E+K+  +  HSE+LAI FG+I       IR+ KNLR+C DCHTA KFIS+   R
Sbjct: 690 HHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGR 749

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EIVVRD  RFHHFK+G+CSC D+W
Sbjct: 750 EIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           I  GL A+ + AS LI         ++   S+++F  L   +G  +N+++   +Q  +  
Sbjct: 327 IRQGLDAEVYVASSLIDMYAKCTRVVD---SYRVFTLLTERDGISWNSIIAGCVQNGLFD 383

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           + +  ++ ML   +   +Y++  +  A A   ++  GK +H ++ + GFD ++++ ++L+
Sbjct: 384 EGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 443

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNII 229
           +MYA CG++  AR++FD   + D+VSW +++ G     +  +A  ++ +M     E N +
Sbjct: 444 DMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYV 503

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEM 254
           A  +++      G V EA + F  M
Sbjct: 504 AFMAVLTACSHAGLVDEAWKYFNSM 528



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           ++ RLF  +     ++W ++I CY  + +  ++L  F+ M+   +  D  V  SVL ACA
Sbjct: 60  DSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA 119

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
            L  +  G S+H   +++G++  +   NAL++MYS
Sbjct: 120 MLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYS 154


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/555 (41%), Positives = 341/555 (61%), Gaps = 34/555 (6%)

Query: 247 ACRLFKEMPKK-DLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSAC 304
           A ++F ++ K  ++  W+ LI  Y +      A+ L+  M     V  D      +L A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             +  V+ G ++H++ ++ G    I +QN+L+H+Y++C                      
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC---------------------- 169

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
                    G V  A  +FD M EKD+V+W+++I+G+A++ +  E L+L+ EM   GI+P
Sbjct: 170 ---------GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKP 220

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T+VS++SAC  + AL  GK  H Y+ K GL  N      L+D+Y + G V+ A  +F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLV 543
               +K   SW +LI+G A+NGL  +++E+F  M+ K G+ P EITFVG+L AC H G+V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMV 340

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            EG  +F  M +E+++EP  +H+GCMVDLL RAG +K+A E I  MPM P+V  W  LLG
Sbjct: 341 KEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLG 400

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC  HGD ++ E    K+++L+P+H G +VLLSN++AS+ RW DV ++R  M+R GV K+
Sbjct: 401 ACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKV 460

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PG S++E    +HEFL GD++HPQ + I   L EM  +L+LEGY P    V  D+++EEK
Sbjct: 461 PGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEK 520

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSEK+AIAF LI+     PIR++KNL++C DCH A K +S+ ++REIVVRDR R
Sbjct: 521 ENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSR 580

Query: 784 FHHFKHGSCSCMDFW 798
           FHHFK+GSCSC D+W
Sbjct: 581 FHHFKNGSCSCQDYW 595



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 223/465 (47%), Gaps = 58/465 (12%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL-IADTFAASRL 68
           +S   ++SV   P+ +  INL  L+T+     S  +  QI +  I  G+ I+D      L
Sbjct: 1   MSPFSETSVLLLPMVEKCINL--LQTY--GVSSLTKLRQIHAFSIRNGVSISDAELGKHL 56

Query: 69  IKFSTDLLPFIEMSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN- 126
           I +   L     MSY+ K+F+ +E P N FI+NT++R Y +      A+ LY+ M  +  
Sbjct: 57  IFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGF 116

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           V  D +TYP L +A      V  G+ IH  V+++GF S +YV N+L+++YA CGD+++A 
Sbjct: 117 VEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE--------------- 225
           K+FD+ P  DLV+WNS++ G+      EEA  +Y +M      P+               
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIG 236

Query: 226 ------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                             RN+ +SN ++ L+ R G V EA  LF EM  K+ VSW++LI 
Sbjct: 237 ALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVD-EVVVVSVLSACANLTVVKAGTS-VHALAVKIGI 325
               N + +EA+ LF NM     ++  E+  V +L AC++  +VK G      ++ +  I
Sbjct: 297 GLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKI 356

Query: 326 ECYINLQNALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           E  I     ++ + +  G++  A E +       +++ W +++      G  + A     
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARM 416

Query: 385 AMIE------KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            +++       D V  S M   YA   ++S+   +  +M   G+R
Sbjct: 417 KILQLEPNHSGDYVLLSNM---YASEQRWSDVQKIRKQMLRDGVR 458



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 49/376 (13%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV-----SWNSILAGYVNADNVEEAKFI 219
           +V++ NTLI  YA  G+  +A  L+ E      V     ++  +L       +V   + I
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 220 YNKMPERN----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           ++ +        I   NS++ L+   G+VA A ++F +MP+KDLV+W+++I+ + +N   
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEAL L+  M    +  D   +VS+LSACA +  +  G   H   +K+G+   ++  N L
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVL 263

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + +Y+ CG +  A+ LFD   + + +SW S+I G    G  ++A  LF  M  K+     
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKE----- 318

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK- 454
                                    G+ P E T V ++ AC+H   + +G     Y R+ 
Sbjct: 319 -------------------------GLLPCEITFVGILYACSHCGMVKEG---FEYFRRM 350

Query: 455 -NGLKINSILG--TTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMNGLADK 510
               KI   +     ++D+  + G V  A E +     +  V  W  L+    ++G  D 
Sbjct: 351 SEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHG--DS 408

Query: 511 SLEMFSEMKKSGVTPN 526
            L   + MK   + PN
Sbjct: 409 DLAELARMKILQLEPN 424


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/485 (47%), Positives = 316/485 (65%), Gaps = 8/485 (1%)

Query: 317 HALAVKIGIECYINLQNALIHMYSSC--GEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           H  AVK GI  +  + N ++  YS C  G++  A KLFD   + D ++ ++MI+ Y    
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYF--- 57

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             E A  +F+ M EKD+V+W+++I+G+A + + +E L+L+  M   G+ PD  T+VS++S
Sbjct: 58  --ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVS 493
           AC  L  L  G+  H Y+ K GL  N      L+D+Y K G +  A ++F     E+ V 
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVV 175

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SW +LI+G A+NG   ++LE F +M++ G+ P+EITFVGVL AC H G+V+EG  +F  M
Sbjct: 176 SWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRM 235

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            +++ + P  +HYGCMVDLLGRAG+LKEA + I+ MP+ P+   W  LLGAC  HG   +
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGL 295

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G     +L++L+P   G +VLLSN++AS+ RW DV EVR  M+  GV K PG S++E   
Sbjct: 296 GAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGN 355

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +HEF+ GDRTHPQ   I  ML EMA KLKL GY P T  V  DI++EEKE+ LF HSEK
Sbjct: 356 HVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEK 415

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           +AIAF LI   P  PIRI+KNLR+C DCH A K IS+ F+R+IVVRD  RFHHF+ GSCS
Sbjct: 416 IAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCS 475

Query: 794 CMDFW 798
           C D+W
Sbjct: 476 CRDYW 480



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 70/295 (23%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           H   +K G  S  YV N +++ Y+ C  GDL+ A KLFDE                    
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDE-------------------- 40

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                      MP ++ +  ++MI  +        A ++F+ MP+KD+V+W+++I+ +  
Sbjct: 41  -----------MPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFAL 84

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N    EAL L+  M    V  D   +VS+LSACA L  +  G   H   VK+G+   ++ 
Sbjct: 85  NGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHA 144

Query: 332 QNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            NAL+ +Y+ CG I+ A K+FD  G   +++SW S+I G                     
Sbjct: 145 NNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVG--------------------- 183

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                  ++G+ +     E L  F +M+  G+ P E T V V+ AC+H   +++G
Sbjct: 184 -----LAVNGFGK-----EALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEG 228



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 175/452 (38%), Gaps = 85/452 (18%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           ++  + L   + D       +   T +  + E +Y  K+F  +   +   +N+++  +  
Sbjct: 27  VVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAY--KVFELMPEKDIVAWNSVINGFAL 84

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
              P +A+ LYK M +  V  D +T   L  A A   ++  G+  H +++K G + +++ 
Sbjct: 85  NGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHA 144

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           NN L+++YA CG +S ARK+FDE  +                              ERN+
Sbjct: 145 NNALLDLYAKCGTISEARKIFDEMGI------------------------------ERNV 174

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++  S+IV     G   EA   FK+M ++ LV                            
Sbjct: 175 VSWTSLIVGLAVNGFGKEALEHFKDMEREGLVP--------------------------- 207

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITT 347
                E+  V VL AC++  +V  G      +  +  I   I     ++ +    G +  
Sbjct: 208 ----SEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKE 263

Query: 348 A-EKLFDAGHNLDLISWNSM-----ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           A + + D     + + W ++     I G+L  G+  +AR L   +  KD   +  + + Y
Sbjct: 264 AYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLL--QLEPKDSGDYVLLSNLY 321

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           A   ++S+   +   M   G+R       S++    H+     G   H          + 
Sbjct: 322 ASEQRWSDVHEVRRTMLSEGVRKTPG--YSLVELGNHVHEFVMGDRTHPQ--------SE 371

Query: 462 ILGTTLIDMYMKL---GCVDNALEVFHGTEEK 490
            +   L++M MKL   G V +   V    EE+
Sbjct: 372 AIYKMLVEMAMKLKLAGYVPHTANVLADIEEE 403


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/770 (32%), Positives = 419/770 (54%), Gaps = 88/770 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-- 142
           +K+F  +   N   +N+++ +       + A+  ++ ML+ +V   ++T   +A A +  
Sbjct: 149 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNF 208

Query: 143 -LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +   +  GK +H + L+ G + + ++ NTL+ MY   G L++++ L       DLV+WN
Sbjct: 209 PMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWN 267

Query: 202 SILAGYVNADNVEEA----------------------------------------KFIYN 221
           ++L+     +   EA                                          + N
Sbjct: 268 TVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN 327

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
              + N    ++++ ++     V   CR+F  M  + +  W+A+I+ Y QNE  EEAL+L
Sbjct: 328 GSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLL 387

Query: 282 FMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F+ M +   ++ +   +  V+ AC          ++H   VK G++    +QNAL+ MYS
Sbjct: 388 FIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYS 447

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          + G ++ A+ +F  M ++D+V+W+T+I+G
Sbjct: 448 -------------------------------RLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 401 YAQHDQFSETLSLFMEMQ-----------HHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           Y   ++  + L +  +MQ              ++P+  TL++++ +C  L AL +GK IH
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           AY  KN L  +  +G+ L+DMY K GC+  + +VF     + V +WN +++ + M+G + 
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            +++M   M   GV PNE+TF+ V  AC H G+V+EG + F +M +++ +EP+S HY C+
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           VDLLGRAG +KEA +LI  +P + D A  W +LLGAC+ H + E+GE   + L++L+P+ 
Sbjct: 657 VDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNV 716

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
              +VLL+NI++S G W    EVR  M  +GV K PGCS IE    +H+F+AGD +HPQ 
Sbjct: 717 ASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 776

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
            ++   L+ + ++++ EGY PDT  V  +++++EKE  L  HSEKLAIAFG++  SP   
Sbjct: 777 EKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTI 836

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IR+ KNLR+CNDCH A KFIS+  DREI++RD  RFHHFK+G+CSC D+W
Sbjct: 837 IRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 148/575 (25%), Positives = 272/575 (47%), Gaps = 90/575 (15%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           SP  +I   ++R+ ++ N+ ++A+  Y  M+   +  DN+ +P L +A A    +  GK 
Sbjct: 57  SPEWWI--DLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQ 114

Query: 153 IHDHVLKAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-- 209
           IH HV K G+  D V V NTL+N+Y  CGD  A  K+FD     + VSWNS+++   +  
Sbjct: 115 IHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE 174

Query: 210 -------------ADNVEEAKFIYNK---------MPER-----------------NIIA 230
                         ++VE + F             MPE                  N   
Sbjct: 175 KWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFI 234

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+++ ++G+ G +A +  L      +DLV+W+ ++S   QNE + EAL     M+   V
Sbjct: 235 INTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGV 294

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAE 349
             D   + SVL AC++L +++ G  +HA A+K G ++    + +AL+ MY +C ++ +  
Sbjct: 295 EPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGC 354

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++FD   +  +  WN+MI+                               GYAQ++   E
Sbjct: 355 RVFDGMFDRKIGLWNAMIT-------------------------------GYAQNEYDEE 383

Query: 410 TLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            L LF+EM+   G+  +  T+  V+ AC    A  + + IH ++ K GL  +  +   L+
Sbjct: 384 ALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALM 443

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK--------- 519
           DMY +LG +D A  +F   E++ + +WN +I G+  +   + +L M  +M+         
Sbjct: 444 DMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASER 503

Query: 520 --KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
             +  + PN IT + +L +C  +  + +G +  ++   ++ L  +      +VD+  + G
Sbjct: 504 ASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCG 562

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            L+ + ++ + +P+  +V TW  ++ A   HG+ +
Sbjct: 563 CLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQ 596



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 57/287 (19%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F +   I   ++  GL  D F  + L+   + L    ++  + +IF  +E  +   +NT
Sbjct: 416 AFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLG---KIDIAKRIFGKMEDRDLVTWNT 472

Query: 102 MMRAYIQRNVPQQAIC-LYKLMLNNNVGVDNYTYPLLAQASALRLSVF----------EG 150
           ++  Y+     + A+  L+K+ +      +  +   L   S   +++           +G
Sbjct: 473 IITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKG 532

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH + +K    +DV V + L++MYA CG L  +RK+FD+ P+ ++++WN I+  Y   
Sbjct: 533 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMH 592

Query: 211 DNVEEA------------------------------------KFIYNKMPERNIIASNS- 233
            N ++A                                    K  YN   +  +  S+  
Sbjct: 593 GNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDH 652

Query: 234 ---MIVLFGRKGNVAEACRLFKEMPKK--DLVSWSALI-SCYEQNEM 274
              ++ L GR G V EA +L   +P+      +WS+L+ +C   N +
Sbjct: 653 YACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNL 699


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/465 (46%), Positives = 310/465 (66%), Gaps = 2/465 (0%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSC-GEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           +VHA AVK+G+  ++ + NALI +++   G ++ A  L     ++D  ++N++I+ Y + 
Sbjct: 231 AVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARA 290

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G V  ARALFD M  ++ VSWS M++GY Q     E L LF  MQ  G+RPD+  LV V+
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVL 350

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           +AC  L  L+QGKW+H Y++ N ++I   LGT L+DMY K G +  A+EVF   +EK V 
Sbjct: 351 AACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVL 410

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           +W  +I G AM+G   ++LE+FS+M++ GV P++I F+G L AC H GLVD+G   F+SM
Sbjct: 411 AWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           ++++ ++P  +HYGCMVDLL R G+L EA E++E MPM PD   WGAL+  C+ H + E+
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVEL 530

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
            E V +  +EL+PD  G +VLL NI+A+ GR     E+R +M  +GV K PGCS +E  G
Sbjct: 531 AEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKG 590

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKL-EGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           +IH+F+ GD +HP I EI +  DE+  +++L EGY PD  EV  DI++EEKE  L RHSE
Sbjct: 591 VIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSE 650

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           K+AIAF LI  S   PIRI+KNLR+C+DCH   K IS+ FD  +V
Sbjct: 651 KMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 184/415 (44%), Gaps = 72/415 (17%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK----LI 153
           + N ++RA      P  A+ LY  +L        +T P L ++ AL  +V   +     +
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 154 HDHVLKAGFDSDVYVNNTLINMYA-VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H H +K G    + V+N LI ++A + G LS A  L   +  +D  ++N+++  Y     
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYA---- 288

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                                      R G V +A  LF EMP ++ VSWSA+++ Y Q 
Sbjct: 289 ---------------------------RAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL LF  M    V  D+ V+V VL+ACA L V++ G  VH       I   + L 
Sbjct: 322 GDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLG 381

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MY+ CGE+  A ++F      ++++W +M                          
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM-------------------------- 415

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAY 451
                I G A H + SE L LF +M+  G++PD+   +  + ACTH   +D+G+ +  + 
Sbjct: 416 -----IKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           +RK G+K        ++D+  + G ++ A E+     EK     +ALI G  M G
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMV----EKMPMKPDALIWGALMAG 521



 Score = 40.8 bits (94), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           EM  + ++F  ++  N   + TM++         +A+ L+  M    V  D+  +     
Sbjct: 393 EMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALC 452

Query: 140 ASALRLSVFEGKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDL 197
           A      V +G+ + D  V K G    +     ++++ A  G L+ AR++ ++ P+  D 
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA 512

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL------FGRKGNVAEACRLF 251
           + W +++AG     NVE A+++     E     S + ++L       GR  +  E   L 
Sbjct: 513 LIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLM 572

Query: 252 KE 253
           +E
Sbjct: 573 RE 574


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/716 (34%), Positives = 406/716 (56%), Gaps = 66/716 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLN------NNVGVDNYTYPLLAQASALRLSVFEGKL 152
           +N+++ A+++ + P+ A+ L+  M         N   D  +   +  A A   ++ + K 
Sbjct: 221 WNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE 280

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH + ++ G  +D +V N LI+ YA CG +                              
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSM------------------------------ 310

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISC 268
            ++A  ++N M  +++++ N+M+  + + G    A  LFK M K+    D+++WSA+I+ 
Sbjct: 311 -KDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           Y Q    +EAL  F  MI +    + V ++S+LSACA+L  +  G   HA ++K   +C 
Sbjct: 370 YAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLK---KCL 426

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI- 387
           ++L N                         DL+  N++I  Y KC S + AR +F+++  
Sbjct: 427 LSLDNDFGGDGDG----------------EDLVVHNALIDMYSKCRSFKAARTIFNSIPR 470

Query: 388 -EKDVVSWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQ 444
            E++VV+W+ MI GYAQ+   ++ L LF EM  + + + P+  T+  ++ AC HL +L  
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRM 530

Query: 445 GKWIHAYIRKNGLKINSI--LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           GK IHAY+ ++    +S+  +   LIDMY K G VD A  VF    ++   SW +++ G+
Sbjct: 531 GKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
            M+G   ++L++F +M+K+G  P++I+F+ +L AC H G+VD+G  +F+ M  ++ +  +
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIAS 650

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
           ++HY C++DLL R+G L +A + I+ MPM P  A W ALL AC+ H + E+ E    KLV
Sbjct: 651 AQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLV 710

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
            ++ ++DG + L+SNI+A+  RW DV  +R +M + G+ K PGCS ++       F  GD
Sbjct: 711 SMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGD 770

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
           R+HP   EI ++L+ +  ++K+ GY P+T     D+D EEK   L  HSEKLA+A+GL+T
Sbjct: 771 RSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLT 830

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            SP  PIRI KNLR+C DCH+A  +IS+  D EI+VRD  RFHHFK+GSCSC  +W
Sbjct: 831 TSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 168/637 (26%), Positives = 293/637 (45%), Gaps = 90/637 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C+S     QI  ++I  GL+  ++ AS L   S  L P    SY         SP  
Sbjct: 38  LKECRSVNTVRQIHQKIIAYGLL--SYPASLL---SVSLPPLPSHSYV--------SPKS 84

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL---- 152
            +   ++ +Y+       A+ + + ++ +         P +     +R  + EG+L    
Sbjct: 85  -LGTGVVASYLACGATSDALSVLERVVPS---------PAVWWNLLVRAHIEEGRLDRAI 134

Query: 153 -IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +   +L+AG   D +   TL      CG+L + R               S   G +  +
Sbjct: 135 GVSCRMLRAGTKPDHF---TLPYALKACGELPSYRS-------------GSAFHGLICCN 178

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISC 268
             E            N+   N+++ ++ R G++ +A  +F E+ +K   D++SW+++++ 
Sbjct: 179 GFES-----------NVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAA 227

Query: 269 YEQNEMYEEALVLF--MNMIDHRVMVDE----VVVVSVLSACANLTVVKAGTSVHALAVK 322
           + +      AL LF  M  I H    +E    + +V++L ACA+L  +     +H+ A++
Sbjct: 228 HVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIR 287

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G      + NALI  Y+ CG +  A  +F+     D++SWN+M++GY + G    A  L
Sbjct: 288 NGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFEL 347

Query: 383 FDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           F  M    I  DV++WS +I+GYAQ     E L  F +M  +G  P+  T++S++SAC  
Sbjct: 348 FKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACAS 407

Query: 439 LVALDQGKWIHAYIRKNGL------------KINSILGTTLIDMYMKLGCVDNALEVFHG 486
           L AL QG   HAY  K  L              + ++   LIDMY K      A  +F+ 
Sbjct: 408 LGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNS 467

Query: 487 T--EEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLGACRHMGL 542
               E+ V +W  +I G+A  G ++ +L++FSEM  K   V PN  T   +L AC H+  
Sbjct: 468 IPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSS 527

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           +  G +  ++ +  H    +S ++   C++D+  + G +  A  + +SMP   +V +W +
Sbjct: 528 LRMG-KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEV-SWTS 585

Query: 601 LLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
           ++     HG  +    +  K+ +    PD   F VLL
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/465 (46%), Positives = 310/465 (66%), Gaps = 2/465 (0%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSC-GEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           +VHA AVK+G+  ++ + NALI +++   G ++ A  L     ++D  ++N++I+ Y + 
Sbjct: 231 AVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARA 290

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G V  ARALFD M  ++ VSWS M++GY Q     E L LF  MQ  G+RPD+  LV V+
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVL 350

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           +AC  L  L+QGKW+H Y++ N ++I   LGT L+DMY K G +  A+EVF   +EK V 
Sbjct: 351 AACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVL 410

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           +W  +I G AM+G   ++LE+FS+M++ GV P++I F+G L AC H GLVD+G   F+SM
Sbjct: 411 AWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           ++++ ++P  +HYGCMVDLL R G+L EA E++E MPM PD   WGAL+  C+ H + E+
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVEL 530

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
            E V +  +EL+PD  G +VLL NI+A+ GR     E+R +M  +GV K PGCS +E  G
Sbjct: 531 AEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKG 590

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKL-EGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           +IH+F+ GD +HP I EI +  DE+  +++L EGY PD  EV  DI++EEKE  L RHSE
Sbjct: 591 VIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSE 650

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           K+AIAF LI  S   PIRI+KNLR+C+DCH   K IS+ FD  +V
Sbjct: 651 KMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 184/415 (44%), Gaps = 72/415 (17%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK----LI 153
           + N ++RA      P  A+ LY  +L        +T P L ++ AL  +V   +     +
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 154 HDHVLKAGFDSDVYVNNTLINMYA-VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           H H +K G    + V+N LI ++A + G LS A  L   +  +D  ++N+++  Y     
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYA---- 288

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                                      R G V +A  LF EMP ++ VSWSA+++ Y Q 
Sbjct: 289 ---------------------------RAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
               EAL LF  M    V  D+ V+V VL+ACA L V++ G  VH       I   + L 
Sbjct: 322 GDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLG 381

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MY+ CGE+  A ++F      ++++W +M                          
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM-------------------------- 415

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAY 451
                I G A H + SE L LF +M+  G++PD+   +  + ACTH   +D+G+ +  + 
Sbjct: 416 -----IKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           +RK G+K        ++D+  + G ++ A E+     EK     +ALI G  M G
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMV----EKMPMKPDALIWGALMAG 521



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           EM  + ++F  ++  N   + TM++         +A+ L+  M    V  D+  +     
Sbjct: 393 EMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALC 452

Query: 140 ASALRLSVFEGKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDL 197
           A      V +G+ + D  V K G    +     ++++ A  G L+ AR++ ++ P+  D 
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA 512

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL------FGRKGNVAEACRLF 251
           + W +++AG     NVE A+++     E     S + ++L       GR  +  E   L 
Sbjct: 513 LIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLM 572

Query: 252 KE 253
           +E
Sbjct: 573 RE 574


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/573 (40%), Positives = 338/573 (58%), Gaps = 31/573 (5%)

Query: 226  RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            +N+I +N ++  +     + +A  LF  M  +D VSWS ++  + +   Y      F  +
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 286  IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
            I      D   +  V+ AC +L  ++ G  +H +  K G++    +  AL+ MY      
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYG----- 882

Query: 346  TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                      KC  +E AR LFD M E+D+V+W+ MI GYA+  
Sbjct: 883  --------------------------KCREIEDARFLFDKMXERDLVTWTVMIGGYAECG 916

Query: 406  QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              +E+L LF +M+  G+ PD+  +V+V+ AC  L A+ + + I  YI++   +++ ILGT
Sbjct: 917  NANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT 976

Query: 466  TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
             +IDM+ K GCV++A E+F   EEK V SW+A+I  +  +G   K+L++F  M +SG+ P
Sbjct: 977  AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILP 1036

Query: 526  NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
            N+IT V +L AC H GLV+EG R F+ M +++ +  + KHY C+VDLLGRAG L EA +L
Sbjct: 1037 NKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKL 1096

Query: 586  IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
            I SM    D   WGA LGAC+ H D  + E+    L+ELQP + G ++LLSNI+A+ GRW
Sbjct: 1097 IXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 1156

Query: 646  DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            +DV ++R +M +R + KIPG + IE +   H+F  GD THP+  EI  ML  +  KL+L 
Sbjct: 1157 EDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 1216

Query: 706  GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            GY PDT  V  D+D+E K   L+ HSEKLAIAFGLI      PIRI+KNLR+C DCHT  
Sbjct: 1217 GYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFC 1276

Query: 766  KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K +S    R I+VRD +RFHHFK G+CSC D+W
Sbjct: 1277 KLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 320/557 (57%), Gaps = 35/557 (6%)

Query: 204 LAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           ++  VN  N+ + + ++ +        NI+ +N +I  +     + +A  LF  M  +D 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           VSWS ++  + +   Y      F  +I      D   +  V+ AC +L  ++ G  +H +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             K G+                               +LD     +++  Y+KC  +E A
Sbjct: 186 VYKFGL-------------------------------DLDHFVCAALVDMYVKCREIEDA 214

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R LFD M E+D+V+W+ MI GYA+  + +E+L LF +M+  G+ PD+  +V+V+ AC  L
Sbjct: 215 RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKL 274

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            A+ + + I  YI++   +++ ILGT +IDMY K GCV++A E+F   EEK V SW+A+I
Sbjct: 275 GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMI 334

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
             +  +G   K+L++F  M  SG+ P++IT   +L AC H GLV+EG R F+SM +++ +
Sbjct: 335 AAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSV 394

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
             + KHY C+VDLLGRAG L EA +LI+SM +  D   WGA LGAC+ H D  + E+   
Sbjct: 395 RTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAAT 454

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
            L+ELQ  + G +VLLSNI+A+ GRW+DV ++R +M +R + K PG + IE +   H+F 
Sbjct: 455 SLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFS 514

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
            GD THP+  EI  ML  ++ KL+L GY PDT  V  D+D+E K   L+ HSEKLAIAFG
Sbjct: 515 VGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFG 574

Query: 740 LITISPPNPIRIMKNLR 756
           LI      PIRI+KNLR
Sbjct: 575 LIATPEHTPIRIIKNLR 591



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 171/390 (43%), Gaps = 72/390 (18%)

Query: 151  KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-- 208
            + +H      G   ++ V N L+  Y+    L  A  LFD   V D VSW+ ++ G+   
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 209  ---------------------------------NADNVEEAKFIYNKMPERNI----IAS 231
                                             +  N++  + I++ + +  +       
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 232  NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             +++ ++G+   + +A  LF +M ++DLV+W+ +I  Y +     E+LVLF  M +  V+
Sbjct: 875  AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 292  VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             D+V +V+V+ ACA L  +    ++     +   +  + L  A+I M++ CG + +A ++
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
            FD     ++ISW++MI+ Y                             GY  H Q  + L
Sbjct: 995  FDRMEEKNVISWSAMIAAY-----------------------------GY--HGQGRKAL 1023

Query: 412  SLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDM 470
             LF  M   GI P++ TLVS++ AC+H   +++G ++         ++ +    T ++D+
Sbjct: 1024 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDL 1083

Query: 471  YMKLGCVDNALEVFHG-TEEKGVSSWNALI 499
              + G +D AL++    T EK    W A +
Sbjct: 1084 LGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/467 (21%), Positives = 191/467 (40%), Gaps = 85/467 (18%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           F   +N     + L  C++  Q  Q+ +Q  + G++ +   A++LI F +    +  +  
Sbjct: 56  FLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYS---YYRALDD 112

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++ +F  +   +   ++ M+  + +          ++ ++      DNYT P + +A   
Sbjct: 113 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 172

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++  G+LIH  V K G D D +V   L++MY  C ++  AR LFD+    DLV+W  +
Sbjct: 173 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVM 232

Query: 204 LAGYVNADNVEEAKFIYNKMPER------------------------------------- 226
           + GY       E+  ++ KM E                                      
Sbjct: 233 IGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF 292

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
             ++I   +MI ++ + G V  A  +F  M +K+++SWSA+I+ Y  +    +AL LF  
Sbjct: 293 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 352

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   ++ D++ + S+L AC++  +V+ G                      +  +SS  E
Sbjct: 353 MLSSGMLPDKITLASLLYACSHAGLVEEG----------------------LRFFSSMWE 390

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQ 403
                   D     D+  +  ++    + G +++A  L  +M IEKD   W   +     
Sbjct: 391 --------DYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRT 442

Query: 404 HDQF---SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
           H       +  +  +E+Q     P    L+S I A       + G+W
Sbjct: 443 HKDVVLAEKAATSLLELQSQN--PGHYVLLSNIYA-------NAGRW 480



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 142/311 (45%), Gaps = 42/311 (13%)

Query: 42   SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
            +  Q  Q+  Q  + G++ +   A++L+ F +    +  +  ++ +F  +   +   ++ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYS---YYRALDDAYGLFDGMCVRDSVSWSV 806

Query: 102  MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
            M+  + +          ++ ++      DNYT P + +A     ++  G+LIH  V K G
Sbjct: 807  MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 866

Query: 162  FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             D D +V   L++MY  C ++  AR LFD+    DLV+W  ++ GY    N  E+  +++
Sbjct: 867  LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFD 926

Query: 222  KMPER---------------------------------------NIIASNSMIVLFGRKG 242
            KM E                                        ++I   +MI +  + G
Sbjct: 927  KMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCG 986

Query: 243  NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
             V  A  +F  M +K+++SWSA+I+ Y  +    +AL LF  M+   ++ +++ +VS+L 
Sbjct: 987  CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 1046

Query: 303  ACANLTVVKAG 313
            AC++  +V+ G
Sbjct: 1047 ACSHAGLVEEG 1057



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L Q + +H     +G+  N I+   L+  Y     +D+A  +F G   +   SW+ ++ G
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           FA  G        F E+ + G  P+  T   V+ ACR +  +  G R  + ++ +  L+ 
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGLDL 869

Query: 562 NSKHYGC--MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +  H+ C  +VD+ G+   +++A  L + M    D+ TW  ++G   + G+
Sbjct: 870 D--HFVCAALVDMYGKCREIEDARFLFDKM-XERDLVTWTVMIGGYAECGN 917



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 21/268 (7%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            +  M+  Y +     +++ L+  M    V  D      +  A A   ++ + + I D++ 
Sbjct: 905  WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 964

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            +  F  DV +   +I+M+A CG + +AR++FD     +++SW++++A Y       +A  
Sbjct: 965  RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 1024

Query: 219  IYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM-----PKKDLVSWSALISCY 269
            ++  M    I+ +     S++      G V E  R F  M      + D+  ++ ++   
Sbjct: 1025 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLL 1084

Query: 270  EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV----KAGTSVHALAVKIGI 325
             +    +EAL L  +M   +   DE +  + L AC     V    KA TS+  L  +   
Sbjct: 1085 GRAGRLDEALKLIXSMTXEK---DEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQ-NP 1140

Query: 326  ECYINLQNALIHMYSSCGEITTAEKLFD 353
              YI L N    +Y++ G      K+ D
Sbjct: 1141 GHYILLSN----IYANAGRWEDVAKIRD 1164


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 342/559 (61%), Gaps = 32/559 (5%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           + +++ A  LF  M + D+V ++++   Y ++    E   LF+ +++  ++ D     S+
Sbjct: 78  ESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSL 137

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA    ++ G  +H L++K+G++  + +   LI+MY+ C +                
Sbjct: 138 LKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECED---------------- 181

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                          V+ AR +FD ++E  VV ++ MI+GYA+ ++ +E LSLF EMQ  
Sbjct: 182 ---------------VDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK 226

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            ++P+E TL+SV+S+C  L +LD GKWIH Y +K+G      + T LIDM+ K G +D+A
Sbjct: 227 NLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDA 286

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           + +F     K   +W+A+I+ +A +G A+ S+ MF  M+   V P+EITF+G+L AC H 
Sbjct: 287 VSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHT 346

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG  +F+ M+ E  + P+ KHYG MVDLLGRAG L++A E I+ +P+SP    W  
Sbjct: 347 GLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRI 406

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL AC  H + E+ E+V  +++EL   H G +V+LSN++A   +W+ V  +R +M  R  
Sbjct: 407 LLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKA 466

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDID 719
           VK+PGCS IE N ++HEF +GD       ++   LDEM K+LKL GY PDT + V  D+ 
Sbjct: 467 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMG 526

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            +EKE TL  HSEKLAIAFGL+   P   IR++KNLR+C DCH+AAK IS  F R++V+R
Sbjct: 527 DQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLR 586

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHF+ G CSC DFW
Sbjct: 587 DVQRFHHFEDGKCSCRDFW 605



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 169/357 (47%), Gaps = 41/357 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + KC S ++  QI +  I +    D    ++LI F T+      MSY+  +F  +  P+ 
Sbjct: 38  ISKCNSERELMQIQAYAIKSHQ-EDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDI 96

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            IFN++ R Y +   P +   L+  +L +++  DNYT+P L +A A+  ++ EG+ +H  
Sbjct: 97  VIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCL 156

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G D +VYV  TLINMY  C D+ AAR +FD      +V +N+++ GY   +   EA
Sbjct: 157 SMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 216

Query: 217 KFIYNKMPERN---------------------------------------IIASNSMIVL 237
             ++ +M  +N                                       +  + ++I +
Sbjct: 217 LSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDM 276

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           F + G++ +A  +F+ M  KD  +WSA+I  Y  +   E ++++F  M    V  DE+  
Sbjct: 277 FAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITF 336

Query: 298 VSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           + +L+AC++  +V+ G    +  V + GI   I    +++ +    G +  A +  D
Sbjct: 337 LGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFID 393



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 154/361 (42%), Gaps = 74/361 (20%)

Query: 165 DVYVNNTLINMYAVC---GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           DV  N  LIN          +S AR LFD     D+V +NSI  GY  + N  E   ++ 
Sbjct: 61  DVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFV 120

Query: 222 KMPERNIIASN---------------------------------------SMIVLFGRKG 242
           ++ E +++  N                                       ++I ++    
Sbjct: 121 EILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECE 180

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           +V  A  +F  + +  +V ++A+I+ Y +     EAL LF  M    +  +E+ ++SVLS
Sbjct: 181 DVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLS 240

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           +CA L  +  G  +H  A K G   Y+ +  ALI M++ CG +  A  +F+     D  +
Sbjct: 241 SCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQA 300

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           W++MI  Y                               A H Q   ++ +F  M+   +
Sbjct: 301 WSAMIVAY-------------------------------ANHGQAENSMLMFERMRSENV 329

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           +PDE T + +++AC+H   +++G+   ++ + + G+  +     +++D+  + G +++A 
Sbjct: 330 QPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAY 389

Query: 482 E 482
           E
Sbjct: 390 E 390


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 269/826 (32%), Positives = 439/826 (53%), Gaps = 88/826 (10%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
           GL  D F A  L+        F  +  +  +F  +   +  ++N MM+AY++     + +
Sbjct: 152 GLQWDVFVAGALVNIYA---KFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 117 CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-----DSDVYVNNT 171
            L+     + +  D  +   +      + +VFE +L               DSDV V N 
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKK-TVFERELEQVRAYATKLFVCDDDSDVTVWNK 267

Query: 172 LINMYAVCGD----LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--- 224
            ++ Y   G+    +   R +       D +++  IL+   + +++E  K I+  +    
Sbjct: 268 TLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG 327

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            ++ +  +NS I ++ + G+V  A R+F +M + DL+SW+ +IS   ++ + E +L LF+
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 284 NMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIG-----------IECY--- 328
           +++   ++ D+  + SVL AC++L      G  VH  A+K G           I+ Y   
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG 447

Query: 329 -----------------INLQNALIHMYSSCGEITTAEKLF----DAGHNLDLISWNS-- 365
                            +   NA++H ++       A +LF    + G   D I++ +  
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAA 507

Query: 366 -----------------------------MISG----YLKCGSVEKARALFDAMIEKDVV 392
                                        +ISG    YLKCG ++ AR +F+ +   D V
Sbjct: 508 KAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDV 567

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           +W+T+ISG  ++ +  + L  + +M+  G++PDE T  +++ AC+ L AL+QGK IHA I
Sbjct: 568 AWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANI 627

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K     +  + T+L+DMY K G +++A  +F     + V+ WNA+I+G A +G A+++L
Sbjct: 628 MKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEAL 687

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
             F+EMK  GVTP+ +TF+GVL AC H GL  + +++F+SM + + +EP  +HY C+VD 
Sbjct: 688 NFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDA 747

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           L RAG ++EAE+++ SMP       +  LL AC+  GD E GERV  KL  + P     +
Sbjct: 748 LSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAY 807

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLLSNI+A+  +W++ +  R MM R  V K PG S I+    +H F+AGDR+H + + I 
Sbjct: 808 VLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIY 867

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           N ++ + K++K EGY PDT     DI++E+KE+ L  HSEKLAIA+GL+   P   +R++
Sbjct: 868 NKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVI 927

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCH A K+IS  F REIV+RD +RFHHF+ G CSC D+W
Sbjct: 928 KNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 147/605 (24%), Positives = 276/605 (45%), Gaps = 57/605 (9%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-FNTMMRAYIQRN- 110
           ++ +GL  D +  + LI               F I    +S    + +N ++ AY     
Sbjct: 39  IVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP--QSDRDLVTYNAILAAYAHTGE 96

Query: 111 -----VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
                   +A  +++L+  + +    +T   L +   L  S    + +  + +K G   D
Sbjct: 97  LHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWD 156

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
           V+V   L+N+YA    +  AR LFD  PV D+V WN ++  YV     +E   +++    
Sbjct: 157 VFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHR 216

Query: 226 RNI----IASNSMIVLFGRKGNV--------AEACRLFKEMPKKDLVSWSALISCYEQNE 273
             +    ++  ++++  G+K           A A +LF      D+  W+  +S Y Q  
Sbjct: 217 SGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAG 276

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
              EA+  F +MI  RV  D +  + +LS  A+L  ++ G  +H   V+ G + ++++ N
Sbjct: 277 EGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVAN 336

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           + I+MY   G +  A ++F     +DLISWN++ISG  + G  E                
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEEC--------------- 381

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYI 452
                           +L LF+++   G+ PD+ T+ SV+ AC+ L  +   G+ +H   
Sbjct: 382 ----------------SLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCA 425

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G+ ++S + T LID+Y K G ++ A  +FH  +   ++SWNA++ GF ++    ++L
Sbjct: 426 LKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREAL 485

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +FS M + G   ++ITF     A   +  + +G +  ++++ + R   +      ++D+
Sbjct: 486 RLFSLMHERGEKADQITFANAAKAAGCLVRLQQG-KQIHAVVIKMRFHYDLFVISGILDM 544

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKLVELQPDHDG 630
             + G +K A ++   +P SPD   W  ++  C ++G+ E         +L  +QPD   
Sbjct: 545 YLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYT 603

Query: 631 FHVLL 635
           F  L+
Sbjct: 604 FATLV 608



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 53/362 (14%)

Query: 37  LQKCQSFKQF----TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L+ C S ++      Q+ +  +  G++ D+F ++ LI   +      E    F       
Sbjct: 405 LRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF------H 458

Query: 93  SPNGF---IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           + +GF    +N MM  +   +  ++A+ L+ LM       D  T+   A+A+   + + +
Sbjct: 459 NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQ 518

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK IH  V+K  F  D++V + +++MY  CG++ +ARK+F++ P  D V+W ++++G V 
Sbjct: 519 GKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVE 578

Query: 210 ADNVEEAKFIYNKM------PERNIIAS-------------------------------- 231
               E+A F Y++M      P+    A+                                
Sbjct: 579 NGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV 638

Query: 232 -NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
             S++ ++ + GN+ +A  LF+ M  + +  W+A+I    Q+   EEAL  F  M    V
Sbjct: 639 MTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGV 698

Query: 291 MVDEVVVVSVLSACANLTVVK-AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
             D V  + VLSAC++  +   A  +  ++    G+E  I   + L+   S  G I  AE
Sbjct: 699 TPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAE 758

Query: 350 KL 351
           K+
Sbjct: 759 KV 760



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGF 502
           GK  HA I  +GL  +  +   LI MY K G + +A ++F  T   ++ + ++NA++  +
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 503 AMNG-LAD-----KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A  G L D     ++  +F  +++S +     T   +   C   G              +
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG-SPSASEALQGYAVK 150

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK--HGDHEMG 614
             L+ +    G +V++  +   ++EA  L + MP+  DV  W  ++ A  +   GD  +G
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKAYVEMGAGDEVLG 209

Query: 615 ERVGRKLVELQPD 627
                    L+PD
Sbjct: 210 LFSAFHRSGLRPD 222


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/649 (37%), Positives = 369/649 (56%), Gaps = 36/649 (5%)

Query: 155 DHVLKAGFD---SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           DH L+  ++    DV   N++I     C DL+ ARKLFDE P   +VSW +++ G++   
Sbjct: 59  DHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFG 118

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            +E A+ ++ KMP R+I A NSMI  +   G V +  RLF+EMP ++++SW+++I   +Q
Sbjct: 119 KIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQ 178

Query: 272 NEMYEEALVLFMNMIDHRVMVDEV--VVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           +   EEAL LF  M+   V V         V++ACAN + +  G  +HA   K+G     
Sbjct: 179 HGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLG----- 233

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
                    YS           FDA  +  LI++      Y  C  +E +  +F   +  
Sbjct: 234 ---------YS-----------FDAYISAALITF------YANCKQMEDSLRVFHGKLHM 267

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           +VV W+ +++GY  + +  + L +F EM   G+ P++++  S +++C  L ALD G+ IH
Sbjct: 268 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 327

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
               K GL+ +  +G +LI MY + G +++ + +F    +K + SWN++I+G A +G   
Sbjct: 328 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 387

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            +L  F++M +S V P+EITF G+L AC H G+  +G   F    +    E    HY CM
Sbjct: 388 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 447

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VD+LGR+G L+EAEELI +MP+  +   W  LL AC  H   E+ ER  + +++L+P   
Sbjct: 448 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 507

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             +VLLSN++AS  RW DV  +R  M +RG+ K PG S I   G  +EFL+GDR+HP  +
Sbjct: 508 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSD 567

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
            I   L+ +  KLK  GY PD      D++ E+KE  L  HSE+LAI FGLI+    + I
Sbjct: 568 RIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTI 627

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +MKNLR+C DCH+A K I++   R+I+VRD  RFHHF  G CSC D+W
Sbjct: 628 TVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 214/455 (47%), Gaps = 51/455 (11%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           S+ S++  ++    ++EA+ +++K+   ++     MI  + R      A +LF EMP KD
Sbjct: 13  SYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKD 72

Query: 259 LVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           +VSW+++I  C++             ++   R + DE+   SV+S               
Sbjct: 73  VVSWNSMIKGCFD-----------CADLTMARKLFDEMPERSVVS--------------- 106

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
                     +  + N  +      G+I  AE LF      D+ +WNSMI GY   G VE
Sbjct: 107 ----------WTTMINGFLQF----GKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVE 152

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISA 435
               LF  M  ++V+SW++MI G  QH +  E L LF +M   G  ++P  +T   VI+A
Sbjct: 153 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 212

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C +  AL QG  IHA++ K G   ++ +   LI  Y     ++++L VFHG     V  W
Sbjct: 213 CANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIW 272

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
            AL+ G+ +N   + +L++F EM + GV PN+ +F   L +C  +  +D G R  ++   
Sbjct: 273 TALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG-REIHTAAV 331

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           +  LE +      ++ +  R G L +   + + +    ++ +W +++  C +HG      
Sbjct: 332 KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWAL 390

Query: 616 RVGRKLVE--LQPDHDGFHVLLSNIHAS----KGR 644
               ++V   ++PD   F  LLS    S    KGR
Sbjct: 391 AFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR 425



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 46/384 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD--NYTYPLLAQASA 142
            ++F  +   N   + +M+    Q    ++A+ L++ M+   V V   + TY  +  A A
Sbjct: 155 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 214

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++++G  IH HV K G+  D Y++  LI  YA C  +  + ++F     +++V W +
Sbjct: 215 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 274

Query: 203 ILAGYVNADNVEEAKFIYNKM------P-------------------------------- 224
           ++ GY      E+A  ++ +M      P                                
Sbjct: 275 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 334

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            E ++   NS+IV++ R GN+ +   +FK + KK++VSW+++I    Q+     AL  F 
Sbjct: 335 LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFN 394

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVKIGIECYINLQNALIHMYSSC 342
            M+   V  DE+    +LSAC++  + + G  +    +     E  ++    ++ +    
Sbjct: 395 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 454

Query: 343 GEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMIS 399
           G++  AE+L  +     + + W  ++S       +E A      +I  E    S   ++S
Sbjct: 455 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 514

Query: 400 G-YAQHDQFSETLSLFMEMQHHGI 422
             YA   ++S+   +  EM+  GI
Sbjct: 515 NLYASASRWSDVSRIRREMKQRGI 538



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 143/314 (45%), Gaps = 37/314 (11%)

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
            S+ SMI+ +L+   +++AR +FD +   DV  ++ MI+GYA++ +F   L LF EM   
Sbjct: 12  FSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP-- 69

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
               D  +  S+I  C     L   + +   + +  +    +  TT+I+ +++ G ++ A
Sbjct: 70  --VKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEVA 123

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             +F+    + +++WN++I G+  NG  +  L +F EM       N I++  ++G     
Sbjct: 124 EGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMP----CRNVISWTSMIGGLDQH 179

Query: 541 GLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVA 596
           G  +E    F  M+     ++P S  Y C++     A  L +  ++   +  +  S D  
Sbjct: 180 GRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAY 239

Query: 597 TWGALL---GACKKHGDHEMGERVGRKLVELQPDHDGFH---VLLSNIHASKG---RWDD 647
              AL+     CK+  D             L+  H   H   V+ + +    G   + +D
Sbjct: 240 ISAALITFYANCKQMED------------SLRVFHGKLHMNVVIWTALVTGYGLNCKHED 287

Query: 648 VLEVRGMMVRRGVV 661
            L+V G M+R GV+
Sbjct: 288 ALKVFGEMMREGVL 301



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 17/271 (6%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI + +   G   D + ++ LI F  +     +M  S ++F      N  I+  ++ 
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAALITFYANCK---QMEDSLRVFHGKLHMNVVIWTALVT 277

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFD 163
            Y      + A+ ++  M+   V + N +    A  S   L   + G+ IH   +K G +
Sbjct: 278 GYGLNCKHEDALKVFGEMMREGV-LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 336

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK- 222
           +DV+V N+LI MY  CG+L+    +F      ++VSWNS++ G         A   +N+ 
Sbjct: 337 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 396

Query: 223 ---MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEM 274
              M E + I    ++      G   +   LFK   +       L  ++ ++    ++  
Sbjct: 397 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 456

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            EEA  L  NM    V  + +V + +LSAC 
Sbjct: 457 LEEAEELIRNM---PVKANSMVWLVLLSACT 484


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/754 (34%), Positives = 402/754 (53%), Gaps = 68/754 (9%)

Query: 55  LTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ 114
           +TG +++ F  + L+   +       +S + K+F  +   +   +N+++ +Y +   P+ 
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCG---SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 115 AICLYKLMLNN-NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           A+ ++  M N      D+ T   +    A   +   GK  H   + +    +++V N L+
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           +MYA  G +                               +EA  +++ MP +++++ N+
Sbjct: 272 DMYAKFGMM-------------------------------DEANTVFSNMPVKDVVSWNA 300

Query: 234 MIVLFGRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           M+  + + G   +A RLF++M     K D+V+WSA IS Y Q  +  EAL +   M+   
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  +EV ++SVLS CA++  +  G  +H  A+K  ++   N                   
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKN------------------- 401

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQF 407
                GH  + +  N +I  Y KC  V+ ARA+FD++   E+DVV+W+ MI GY+QH   
Sbjct: 402 -----GHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456

Query: 408 SETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILG 464
           ++ L L  EM  +    RP+  T+   + AC  L AL  GK IHAY +R     +   + 
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS 516

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             LIDMY K G + +A  VF    EK   +W +L+ G+ M+G  +++L +F EM++ G  
Sbjct: 517 NCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFK 576

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
            + +T + VL AC H G++D+G  +FN M  +  + P  +HY C+VDLLGRAG L  A  
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALR 636

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LIE MPM P    W ALL  C+ HG  E+GE   +K+ EL  ++DG + LLSN++A+ GR
Sbjct: 637 LIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGR 696

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W DV  +R +M  +G+ K PGCS +E       F  GD+THP   EI  +L +  +++K 
Sbjct: 697 WKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKD 756

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY P+T     D+D EEK+  LF HSEKLA+A+G++T      IRI KNLR+C DCHTA
Sbjct: 757 IGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTA 816

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             ++SR  D EI++RD  RFHHFK+G CSC  +W
Sbjct: 817 FTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 169/642 (26%), Positives = 292/642 (45%), Gaps = 94/642 (14%)

Query: 6   KLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAA 65
           +L  L +  KS  + K     T  L I    + KC++  Q   I  +++  G++      
Sbjct: 4   RLVTLRAAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT- 62

Query: 66  SRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF--NTMMRAYIQRNVPQQAICLYKLML 123
           S LI   +  +    +S++  +       +  ++  N+++R+Y       + +  + LM 
Sbjct: 63  SHLI---STYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMH 119

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           + +   DNYT+P +                                      +  CG++S
Sbjct: 120 SLSWTPDNYTFPFV--------------------------------------FKACGEIS 141

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGN 243
           + R   D S  L  V+      G+++                 N+   N+++ ++ R G+
Sbjct: 142 SVR-CGDSSHALSRVT------GFMS-----------------NVFVGNALVAMYSRCGS 177

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLS 302
           +++A ++F EMP  D+VSW+++I  Y +    + AL +F  M +      D++ +V+VL 
Sbjct: 178 LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
            CA++     G   H  AV   +   + + N L+ MY+  G +  A  +F      D++S
Sbjct: 238 PCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS 297

Query: 363 WNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           WN+M++GY + G  E A  LF+ M    I+ DVV+WS  ISGYAQ     E L +  +M 
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML 357

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAY-------IRKNGLKINSILGTTLIDMY 471
             GI+P+E TL+SV+S C  + AL  GK IH Y       +RKNG    +++   LIDMY
Sbjct: 358 SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMY 417

Query: 472 MKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNE 527
            K   VD A  +F     +E+ V +W  +I G++ +G A+K+LE+ SEM  +     PN 
Sbjct: 418 AKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477

Query: 528 ITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            T    L AC  +  +  G + H  ++  +    P      C++D+  + G + +A  + 
Sbjct: 478 FTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVF 536

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMG-------ERVGRKL 621
           ++M M  +  TW +L+     HG  E          R+G KL
Sbjct: 537 DNM-MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKL 577



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 5/261 (1%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKD--VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           +IS Y+  G +  A +L       D  V  W+++I  Y  + + ++ LS F  M      
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  T   V  AC  + ++  G   HA  R  G   N  +G  L+ MY + G + +A +V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGL 542
           F       V SWN++I  +A  G    +LEMFS+M    G  P++IT V VL  C  +G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
              G + F+       +  N     C+VD+  + GM+ EA  +  +MP+  DV +W A++
Sbjct: 245 RSLG-KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMV 302

Query: 603 GACKKHGDHEMGERVGRKLVE 623
               + G  E   R+  ++ E
Sbjct: 303 AGYSQIGRFEDAVRLFEQMQE 323


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/563 (40%), Positives = 348/563 (61%), Gaps = 5/563 (0%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +   G +  +  L +       + +++ I  +        AL L  +M+   ++     +
Sbjct: 333 YAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTL 392

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG-H 356
            + L AC  L+    G ++H  A K+ +     +  AL+ MY+  G+ T A  LFD    
Sbjct: 393 SASLPACRGLS---PGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLP 449

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           +  ++S  +M++ Y   G+++ AR+LFD +  KD V W+ MI GY QH + +E L LF  
Sbjct: 450 DPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRR 509

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLG 475
           M   G+ PDE T+V V+SA   L  ++ GKW+H+Y++ +  ++++  +GT LIDMY K G
Sbjct: 510 MLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCG 569

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            + +A++VFHG  +K +  WNA+I G+AM+G + K+LEMF + ++ G+ P +ITF+G+L 
Sbjct: 570 SLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLN 629

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H G+V+EG   F SM +E+ ++P  +HYGCMVDLLGRAG++KEA  L++SM ++PD 
Sbjct: 630 ACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDA 689

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             W +LL AC+ H +  +G+++   LV     + G ++LLSNI+A+ G W +V  VR MM
Sbjct: 690 VMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMM 749

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
              G+ K PGCS IE +  ++EF+AGD +HP+ +EI  MLD+M   +K  G+ P T  V 
Sbjct: 750 KASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVL 809

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+D+  KE  L  HSEKLA+AFGLI+  P   I+I+KNLR C+DCH   K ISR   R+
Sbjct: 810 HDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRK 869

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IV RDR+RFHHF  GSCSC D+W
Sbjct: 870 IVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/409 (19%), Positives = 156/409 (38%), Gaps = 82/409 (20%)

Query: 37  LQKCQSFKQFTQILSQMILTGLI--ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           L  C + ++  ++ + ++ TGL+   D   A RL +          +  S  +      P
Sbjct: 296 LTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYA---ASGRLDLSLALLRRTRDP 352

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
               + + + A+  R     A+ L   ML    G+    + L A   A R  +  G+ +H
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQ--GLLPTAHTLSASLPACR-GLSPGRALH 409

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES---------------------- 192
            +  K     D YV   L+ MYA  GD +AAR LFD+                       
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469

Query: 193 ----------PVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER---------- 226
                     P  D V WN+++ GY       EA  ++ +M      P+           
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAV 529

Query: 227 ------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
                                   ++    ++I ++ + G++ +A  +F  +  KD+V W
Sbjct: 530 AQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVW 589

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAV 321
           +A+I+ Y  +    +AL +F+   +  +   ++  + +L+AC++  +V+ G     ++  
Sbjct: 590 NAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMER 649

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISG 369
           + GI+  I     ++ +    G I  A  L  +     D + W S+++ 
Sbjct: 650 EYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAA 698


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 360/614 (58%), Gaps = 45/614 (7%)

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           ++I  S  ++ L+   G+V+ +   F ++P+KD+ +W+++IS Y  N  + EA+  F  +
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 108

Query: 286 I-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +    +  D      VL AC  L     G  +H  A K+G +  + +  +LIHMYS  G 
Sbjct: 109 LLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGF 165

Query: 345 ITTAEKLFDAGHNLDLISWNSMISG----------------------------------- 369
              A  LFD     D+ SWN+MISG                                   
Sbjct: 166 TGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV 225

Query: 370 ----YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRP 424
               Y K G ++ A  +F+ +  KDV+SW+T+I+GYAQ+   SE + ++  M+    I P
Sbjct: 226 FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIP 285

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           ++ T VS++ A  H+ AL QG  IH  + K  L ++  + T LID+Y K G + +A+ +F
Sbjct: 286 NQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLF 345

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +   ++   +WNA+I    ++G A+K+L++F EM   GV P+ +TFV +L AC H G V+
Sbjct: 346 YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVE 405

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG   F  ++QE+ ++P+ KHYGCMVDLLGRAG L+ A + I+ MP+ PD + WGALLGA
Sbjct: 406 EGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGA 464

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ HG+ E+G+    +L E+   + G++VLLSNI+A+ G+W+ V +VR +   RG+ K P
Sbjct: 465 CRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTP 524

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S IE N  +  F  G+++HP+  EI   L  +  K+K  GY PD   V  D++++EKE
Sbjct: 525 GWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKE 584

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSE+LAIAFG+I+  P +PIRI KNLR+C DCH A KFISR   REIVVRD +RF
Sbjct: 585 HILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRF 644

Query: 785 HHFKHGSCSCMDFW 798
           HHFK G CSC D+W
Sbjct: 645 HHFKDGICSCGDYW 658



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 236/465 (50%), Gaps = 48/465 (10%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           +++ G +   F ++RL+    +L    ++S S   F  +   + + +N+M+ AY+     
Sbjct: 42  LVVAGKVQSIFISTRLVNLYANLG---DVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHF 98

Query: 113 QQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
            +AI C Y+L+L + +  D YT+P + +A     ++ +G+ IH    K GF  +V+V  +
Sbjct: 99  HEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAAS 155

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERN 227
           LI+MY+  G    AR LFD+ P  D+ SWN++++G +   N  +A  + ++M     + N
Sbjct: 156 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 215

Query: 228 IIASNSMIVLF----GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            +   S++ +F     + G +  A ++F+ +P KD++SW+ LI+ Y QN +  EA+ ++ 
Sbjct: 216 FVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK 275

Query: 284 NMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
            M + + ++ ++   VS+L A A++  ++ G  +H   +K  +                 
Sbjct: 276 MMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL----------------- 318

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                         +LD+     +I  Y KCG +  A +LF  + ++  V+W+ +IS + 
Sbjct: 319 --------------HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 364

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
            H    +TL LF EM   G++PD  T VS++SAC+H   +++GKW    +++ G+K +  
Sbjct: 365 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLK 424

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
               ++D+  + G ++ A +       +   S W AL+    ++G
Sbjct: 425 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 469



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 177/379 (46%), Gaps = 56/379 (14%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL---- 371
           +HAL V  G    I +   L+++Y++ G+++ +   FD     D+ +WNSMIS Y+    
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 372 -----------------------------KCGSVEKARAL----FDAMIEKDVVSWSTMI 398
                                         CG++   R +    F    + +V   +++I
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 157

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             Y++        SLF +M    +    A +  +I       ALD    +   +R  G+K
Sbjct: 158 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD----VLDEMRLEGIK 213

Query: 459 IN-----SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           +N     SIL    +DMY KLG +D+A +VF     K V SWN LI G+A NGLA +++E
Sbjct: 214 MNFVTVVSIL-PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 272

Query: 514 MFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           ++  M++   + PN+ T+V +L A  H+G + +G +    +I+ + L  +     C++D+
Sbjct: 273 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTN-LHLDVFVATCLIDV 331

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
            G+ G L +A  L   +P    V TW A++     HG  E   ++  ++++  ++PDH  
Sbjct: 332 YGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 631 FHVLLSNIHAS----KGRW 645
           F  LLS    S    +G+W
Sbjct: 391 FVSLLSACSHSGFVEEGKW 409


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/744 (35%), Positives = 407/744 (54%), Gaps = 78/744 (10%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHV 157
           NT++ A+ +  +P+ A  L + +L+       D +T+P L +A+    S  +   +H   
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQ---LHACA 93

Query: 158 LKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           L+ G     V+ + +L++ Y   G +S A K+FDE    D+ +WN++L+G        EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 217 KFIYNKMP---------------------------------------ERNIIASNSMIVL 237
             ++ +M                                        ++ +   N++I +
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +G+ G + EA  +F  M  +DLV+W+++IS  EQ      AL +F  M    V  D + +
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+ SA A     ++  S+H         CY+                    + +D    
Sbjct: 274 VSLASAIAQGGDGRSAKSLH---------CYV------------------MRRGWDVD-- 304

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D+I+ N+++  Y K  ++E A+ +FD+M  +D VSW+T+I+GY Q+   +E +  +  M
Sbjct: 305 -DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHM 363

Query: 418 Q-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           Q H G++  + T VSV+ A +HL AL QG  +HA   K GL ++  +GT LID+Y K G 
Sbjct: 364 QKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGK 423

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +  A+ +F     +    WNA+I G  ++G   ++L +FS M++ G+ P+ +TFV +L A
Sbjct: 424 LAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAA 483

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLVD+G   F+ M   + + P +KHY CM D+LGRAG L EA   I++MP+ PD A
Sbjct: 484 CSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSA 543

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WGALLGAC+ HG+ EMG+   + L EL P++ G++VL+SN++A  G+WD V EVR ++ 
Sbjct: 544 VWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVR 603

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRT--HPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           R+ + K PG S IE    ++ F +G++T  HPQ  EI   L  +  K++  GY  D   V
Sbjct: 604 RQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFV 663

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++ +EKE  L  HSE+LAIAFG+I      P+ I KNLR+C DCH A K+IS+  +R
Sbjct: 664 LQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITER 723

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI+VRD +RFHHFK G CSC DFW
Sbjct: 724 EIIVRDSNRFHHFKDGHCSCGDFW 747


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 364/621 (58%), Gaps = 41/621 (6%)

Query: 179 CGDLSAARKLFDESPVLDLVSW-NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
           CG L   R L+  S +L+  ++   +  G     +++ + F      E +++  N ++ +
Sbjct: 98  CGSLEPERTLY--SKMLNKCTYLRKLKQGRAIHAHIQSSTF------EDDLVLLNFILNM 149

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++ EA  LF +MP KD+VSW+ LIS Y Q+    EAL LF  M+      +E  +
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+L A         G  +HA ++K G +  +++ ++L+ MY+                 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYAR---------------- 253

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                W  M           +A+ +F+++  K+VVSW+ +I+G+A+  +    + LF++M
Sbjct: 254 -----WAHM----------REAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM 298

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G  P   T  SV +AC    +L+QGKW+HA++ K+G +  + +G TLIDMY K G +
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 358

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            +A +VF    ++ + SWN++I G+A +GL  ++L++F +M K+ V PNEITF+ VL AC
Sbjct: 359 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 418

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GL+DEG  +F  ++++H++E    H+  +VDLLGRAG L EA + IE MP+ P  A 
Sbjct: 419 SHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 477

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           WGALLG+C+ H + ++G     ++ EL P   G HVLLSNI+AS GR  D  +VR MM  
Sbjct: 478 WGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 537

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
            GV K P CS +E    +H F+A D +HP   EI  M ++++ K+K  GY PDT  V F 
Sbjct: 538 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 597

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++Q+++E  L  HSEKLA+AF ++   P   IRI KN+RIC DCH+A KF SR   REI+
Sbjct: 598 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 657

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD +RFHHF HG CSC D+W
Sbjct: 658 VRDTNRFHHFLHGMCSCRDYW 678



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 39/294 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  ++  Y Q     +A+ L+  ML+     + +T   L +AS    S   G+ +H   L
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL 233

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA-------- 210
           K G+D +V+V ++L++MYA    +  A+ +F+     ++VSWN+++AG+           
Sbjct: 234 KYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMR 293

Query: 211 -------DNVEEAKFIYN---------------KMPERNIIAS---------NSMIVLFG 239
                     E   F Y+               K    ++I S         N++I ++ 
Sbjct: 294 LFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYA 353

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A ++F+ + K+D+VSW+++IS Y Q+ +  EAL LF  M+  +V  +E+  +S
Sbjct: 354 KSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLS 413

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           VL+AC++  ++  G     L  K  IE  +     ++ +    G +  A K  +
Sbjct: 414 VLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIE 467



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 41/229 (17%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  L + N   +N ++  + ++   +  + L+  ML       ++TY  +  A A   S
Sbjct: 263 IFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGS 322

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H HV+K+G     Y+ NTLI+MYA  G +  A+K+F      D+VSWNSI++G
Sbjct: 323 LEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISG 382

Query: 207 YV-----------------------------------NADNVEEAKFIYNKMPERNI--- 228
           Y                                    ++  ++E ++ +  M +  I   
Sbjct: 383 YAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ 442

Query: 229 IASNSMIV-LFGRKGNVAEACRLFKEMPKKDLVS-WSALI-SCYEQNEM 274
           +A +  +V L GR G + EA +  +EMP K   + W AL+ SC     M
Sbjct: 443 VAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNM 491



 Score = 40.0 bits (92), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L   +   +N+++  Y Q  +  +A+ L++ ML   V  +  T+  +  A +   
Sbjct: 363 KVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSG 422

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS-WNSIL 204
            + EG+   + + K   ++ V  + T++++    G L+ A K  +E P+    + W ++L
Sbjct: 423 LLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVL------FGRKGNVAEACRLFKE--MPK 256
                  N++   +   ++ E +   S   ++L       GR  + A+  ++ KE  + K
Sbjct: 483 GSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 542

Query: 257 KDLVSW 262
           +   SW
Sbjct: 543 EPACSW 548


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/740 (35%), Positives = 404/740 (54%), Gaps = 72/740 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY       +A+ L+  M   ++  + YT+    QA      + +G  IH  VL
Sbjct: 286 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 345

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K+ +  +V+V N LI MYA  G +  A  +F      D +SWNS+L+G+V      EA  
Sbjct: 346 KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQ 405

Query: 219 IYNKMPER----NIIASNSMIVLFGRKGNV-----------------------------A 245
            Y++M +     +++A  S+I    R GN                              A
Sbjct: 406 FYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYA 465

Query: 246 EACRL------FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + C +      F +MP KD+VSW+ +I+ + QN  +  AL LF  +    + +D +++ S
Sbjct: 466 KFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISS 525

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L AC+ L ++ +   +H+  ++ G+                                 D
Sbjct: 526 ILLACSGLKLISSVKEIHSYIIRKGLS--------------------------------D 553

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+  N ++  Y +CG+V+ A  +F+ +  KDVVSW++MIS Y  +   +E L LF  M+ 
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 613

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+ PD  +LVS++SA   L AL +GK IH ++ + G  +   L +TL+DMY + G ++ 
Sbjct: 614 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 673

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           +  VF+    K +  W ++I  + M+G    ++++F  M+   + P+ I FV VL AC H
Sbjct: 674 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 733

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL++EG R   SM  E++LEP  +HY C+VDLLGRA  L+EA + ++ M + P    W 
Sbjct: 734 SGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 793

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC+ H + E+GE   +KL+E+ P++ G +VL+SN++A++ RW DV EVR  M   G
Sbjct: 794 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASG 853

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDI 718
           + K PGCS IE    +H F+A D++HPQ  EI + L ++ +KL  E GY   T  V  + 
Sbjct: 854 LKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNA 913

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            +EEK   L+ HSE+LAIA+G++T      +RI KNLR+C DCH   K IS+ F+RE+V+
Sbjct: 914 KEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVM 973

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHFK G CSC D W
Sbjct: 974 RDANRFHHFKGGVCSCGDVW 993



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 305/645 (47%), Gaps = 83/645 (12%)

Query: 37  LQKCQSFKQFT---QILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L+ C S K  +   Q+ + MI +  L    F ++RL+         ++     K+F  + 
Sbjct: 121 LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAE---KLFDGMP 177

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
               F +N M+ AY+    P  ++ LY+ M  + + +D  T+P + +A  L      G  
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGYVNAD 211
           +H   +K G+ S V+V N+++ MY  C DL+ AR+LFD  P   D+VSWNS+++ Y +  
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 212 NVEEAKFIYNKMPER---------------------------------------NIIASN 232
              EA  ++ +M +                                        N+  +N
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 357

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ R G + EA  +F  M   D +SW++++S + QN +Y EAL  +  M D     
Sbjct: 358 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 417

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D V V+S+++A A       G  +HA A+K G++  + + N+L+ MY+    +   + +F
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 477

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D   + D++SW ++I+G                               +AQ+   S  L 
Sbjct: 478 DKMPDKDVVSWTTIIAG-------------------------------HAQNGSHSRALE 506

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF E+Q  GI  D   + S++ AC+ L  +   K IH+YI + GL  + +L   ++D+Y 
Sbjct: 507 LFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYG 565

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           + G VD A  +F   E K V SW ++I  +  NGLA+++LE+F  MK++GV P+ I+ V 
Sbjct: 566 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 625

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L A   +  + +G      +I++  +   S     +VD+  R G L+++  +   +  +
Sbjct: 626 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA-STLVDMYARCGTLEKSRNVFNFI-RN 683

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
            D+  W +++ A   HG       + R++ +  + PDH  F  +L
Sbjct: 684 KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 728



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 215/452 (47%), Gaps = 42/452 (9%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  S  ++ ++G+ G + +A +LF  MP K + +W+A+I  Y  N     +L L+  M 
Sbjct: 149 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              + +D      +L AC  L   + G  VH LA+K G    + + N+++ MY+      
Sbjct: 209 VSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYT------ 262

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHD 405
                                    KC  +  AR LFD M EK DVVSW++MIS Y+ + 
Sbjct: 263 -------------------------KCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           Q  E L LF EMQ   + P+  T V+ + AC     + QG +IHA + K+   IN  +  
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 357

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI MY + G +  A  +F+  ++    SWN+++ GF  NGL  ++L+ + EM+ +G  P
Sbjct: 358 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 417

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +  + ++ A    G    G +  ++   ++ L+ + +    +VD+  +   +K  + +
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCI 476

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG-- 643
            + MP   DV +W  ++    ++G H     + R+ V+L+       ++ S + A  G  
Sbjct: 477 FDKMP-DKDVVSWTTIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLK 534

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
               V E+   ++R+G+       ++  NGI+
Sbjct: 535 LISSVKEIHSYIIRKGL-----SDLVLQNGIV 561



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 227/506 (44%), Gaps = 77/506 (15%)

Query: 37  LQKCQ--SF-KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C+  SF KQ   I + ++ +    + F A+ LI        F +M  +  IF  ++ 
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYAR---FGKMGEAANIFYNMDD 381

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N+M+  ++Q  +  +A+  Y  M +     D      +  ASA   +   G  I
Sbjct: 382 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN- 212
           H + +K G DSD+ V N+L++MYA    +     +FD+ P  D+VSW +I+AG+    + 
Sbjct: 442 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 501

Query: 213 ----------------------------------VEEAKFIYNKMPER---NIIASNSMI 235
                                             +   K I++ +  +   +++  N ++
Sbjct: 502 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 561

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++G  GNV  A R+F+ +  KD+VSW+++ISCY  N +  EAL LF  M +  V  D +
Sbjct: 562 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 621

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VS+LSA A+L+ +K G  +H   ++ G     +L + L+ MY+ CG +  +  +F+  
Sbjct: 622 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 681

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            N DL+ W SMI+ Y   G     RA  D                            LF 
Sbjct: 682 RNKDLVLWTSMINAYGMHGC---GRAAID----------------------------LFR 710

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+   I PD    V+V+ AC+H   +++G +++ +   +  L+        L+D+  + 
Sbjct: 711 RMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRA 770

Query: 475 GCVDNALEVFHGTE-EKGVSSWNALI 499
             ++ A +   G E E     W AL+
Sbjct: 771 NHLEEAYQFVKGMEVEPTAEVWCALL 796



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 17/214 (7%)

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI- 462
           ++ F     LF          DEA   SV+  C    AL +G+ +HA++  +    NS+ 
Sbjct: 93  NEAFQSLTDLFANQSPSQFSLDEA-YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 151

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           L T L+ MY K GC+ +A ++F G   K + +WNA+I  +  NG    SLE++ EM+ SG
Sbjct: 152 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSG 211

Query: 523 VTPNEITFVGVLGACRHMGLVDE---GHRHFNSMIQEHRLE----PNSKHYGCMVDLLGR 575
           +  +  TF  +L AC   GL+ +   G       I+E  +      NS     +V +  +
Sbjct: 212 IPLDACTFPCILKAC---GLLKDRRCGAEVHGLAIKEGYVSIVFVANS-----IVGMYTK 263

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
              L  A +L + MP   DV +W +++ A   +G
Sbjct: 264 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/649 (37%), Positives = 369/649 (56%), Gaps = 36/649 (5%)

Query: 155 DHVLKAGFD---SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           DH L+  ++    DV   N++I     C DL+ ARKLFDE P   +VSW +++ G++   
Sbjct: 43  DHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFG 102

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            +E A+ ++ KMP R+I A NSMI  +   G V +  RLF+EMP ++++SW+++I   +Q
Sbjct: 103 KIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQ 162

Query: 272 NEMYEEALVLFMNMIDHRVMVDEV--VVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
           +   EEAL LF  M+   V V         V++ACAN + +  G  +HA   K+G     
Sbjct: 163 HGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLG----- 217

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
                    YS           FDA  +  LI++      Y  C  +E +  +F   +  
Sbjct: 218 ---------YS-----------FDAYISAALITF------YANCKQMEDSLRVFHGKLHM 251

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           +VV W+ +++GY  + +  + L +F EM   G+ P++++  S +++C  L ALD G+ IH
Sbjct: 252 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 311

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
               K GL+ +  +G +LI MY + G +++ + +F    +K + SWN++I+G A +G   
Sbjct: 312 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 371

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            +L  F++M +S V P+EITF G+L AC H G+  +G   F    +    E    HY CM
Sbjct: 372 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 431

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VD+LGR+G L+EAEELI +MP+  +   W  LL AC  H   E+ ER  + +++L+P   
Sbjct: 432 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 491

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             +VLLSN++AS  RW DV  +R  M +RG+ K PG S I   G  +EFL+GDR+HP  +
Sbjct: 492 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSD 551

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
            I   L+ +  KLK  GY PD      D++ E+KE  L  HSE+LAI FGLI+    + I
Sbjct: 552 RIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTI 611

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +MKNLR+C DCH+A K I++   R+I+VRD  RFHHF  G CSC D+W
Sbjct: 612 TVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 211/451 (46%), Gaps = 51/451 (11%)

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           ++  ++    ++EA+ +++K+   ++     MI  + R      A +LF EMP KD+VSW
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSW 60

Query: 263 SALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           +++I  C++             ++   R + DE+   SV+S                   
Sbjct: 61  NSMIKGCFD-----------CADLTMARKLFDEMPERSVVS------------------- 90

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
                 +  + N  +      G+I  AE LF      D+ +WNSMI GY   G VE    
Sbjct: 91  ------WTTMINGFLQF----GKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLR 140

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHL 439
           LF  M  ++V+SW++MI G  QH +  E L LF +M   G  ++P  +T   VI+AC + 
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            AL QG  IHA++ K G   ++ +   LI  Y     ++++L VFHG     V  W AL+
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            G+ +N   + +L++F EM + GV PN+ +F   L +C  +  +D G R  ++   +  L
Sbjct: 261 TGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG-REIHTAAVKLGL 319

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           E +      ++ +  R G L +   + + +    ++ +W +++  C +HG          
Sbjct: 320 ETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFN 378

Query: 620 KLVE--LQPDHDGFHVLLSNIHAS----KGR 644
           ++V   ++PD   F  LLS    S    KGR
Sbjct: 379 QMVRSMVEPDEITFTGLLSACSHSGMSQKGR 409



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 46/384 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD--NYTYPLLAQASA 142
            ++F  +   N   + +M+    Q    ++A+ L++ M+   V V   + TY  +  A A
Sbjct: 139 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 198

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++++G  IH HV K G+  D Y++  LI  YA C  +  + ++F     +++V W +
Sbjct: 199 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 258

Query: 203 ILAGYVNADNVEEAKFIYNKM------P-------------------------------- 224
           ++ GY      E+A  ++ +M      P                                
Sbjct: 259 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 318

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            E ++   NS+IV++ R GN+ +   +FK + KK++VSW+++I    Q+     AL  F 
Sbjct: 319 LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFN 378

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVKIGIECYINLQNALIHMYSSC 342
            M+   V  DE+    +LSAC++  + + G  +    +     E  ++    ++ +    
Sbjct: 379 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 438

Query: 343 GEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMIS 399
           G++  AE+L  +     + + W  ++S       +E A      +I  E    S   ++S
Sbjct: 439 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 498

Query: 400 G-YAQHDQFSETLSLFMEMQHHGI 422
             YA   ++S+   +  EM+  GI
Sbjct: 499 NLYASASRWSDVSRIRREMKQRGI 522



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 140/309 (45%), Gaps = 37/309 (11%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           MI+ +L+   +++AR +FD +   DV  ++ MI+GYA++ +F   L LF EM       D
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP----VKD 56

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             +  S+I  C     L   + +   + +  +    +  TT+I+ +++ G ++ A  +F+
Sbjct: 57  VVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEVAEGLFY 112

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + +++WN++I G+  NG  +  L +F EM       N I++  ++G     G  +E
Sbjct: 113 KMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMP----CRNVISWTSMIGGLDQHGRSEE 168

Query: 546 GHRHFNSMIQEH-RLEPNSKHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGAL 601
               F  M+     ++P S  Y C++     A  L +  ++   +  +  S D     AL
Sbjct: 169 ALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAAL 228

Query: 602 L---GACKKHGDHEMGERVGRKLVELQPDHDGFH---VLLSNIHASKG---RWDDVLEVR 652
           +     CK+  D             L+  H   H   V+ + +    G   + +D L+V 
Sbjct: 229 ITFYANCKQMED------------SLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF 276

Query: 653 GMMVRRGVV 661
           G M+R GV+
Sbjct: 277 GEMMREGVL 285



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 17/271 (6%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  QI + +   G   D + ++ LI F  +     +M  S ++F      N  I+  ++ 
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAALITFYANCK---QMEDSLRVFHGKLHMNVVIWTALVT 261

Query: 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFD 163
            Y      + A+ ++  M+   V + N +    A  S   L   + G+ IH   +K G +
Sbjct: 262 GYGLNCKHEDALKVFGEMMREGV-LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLE 320

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK- 222
           +DV+V N+LI MY  CG+L+    +F      ++VSWNS++ G         A   +N+ 
Sbjct: 321 TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQM 380

Query: 223 ---MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEM 274
              M E + I    ++      G   +   LFK   +       L  ++ ++    ++  
Sbjct: 381 VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGK 440

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            EEA  L  NM    V  + +V + +LSAC 
Sbjct: 441 LEEAEELIRNM---PVKANSMVWLVLLSACT 468


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/794 (33%), Positives = 426/794 (53%), Gaps = 83/794 (10%)

Query: 53  MILTGLIADTFAASRLIKF-STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
           ++ T L+ D F ++ L+ F  T+      +S + ++F  +   N   +N+M+R +    +
Sbjct: 210 VVKTRLVEDVFVSNALVSFYGTN----GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGL 265

Query: 112 PQQAICLYKLMLNNNVGV----DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
            ++   L   M+  +  +    D  T   +    A    +  GK +H   +K   D +V 
Sbjct: 266 SEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVV 325

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA----------- 216
           VNN L++MY+ CG ++ A+ +F  +   ++VSWN+++ G+  A ++ +            
Sbjct: 326 VNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGG 385

Query: 217 -------KFIYNKMP------------------------ERNIIASNSMIVLFGRKGNVA 245
                    I N +P                          N + +N+ +  + + G+++
Sbjct: 386 GDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLS 445

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A R+F  +  K + SW+ALI  Y Q+     +L  +  M    ++ D   V S+LSAC+
Sbjct: 446 YAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACS 505

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            +  +K G  VH L ++  +E    +  +L+ +Y  CGE++TA  LFDA  +  L+SWN+
Sbjct: 506 QIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNT 565

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           M++GYL+ G  E+A                               LSLF +M  +G++P 
Sbjct: 566 MVNGYLQNGFPERA-------------------------------LSLFRQMVLYGVQPC 594

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           E +++SV  AC+ L +L  G+  H Y  K  L+ N+ +  ++IDMY K G V  + +VF+
Sbjct: 595 EISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFN 654

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
           G +E+ V+SWNA+++G+ ++G A +++++F EM+++G  P+E+TF+GVL AC H GLV E
Sbjct: 655 GLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHE 714

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL-IESMPMSPDVATWGALLGA 604
           G  + + M     + P  KHY C++D+L RAG L EA ++  E M   P V  W  LL +
Sbjct: 715 GLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSS 774

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ H + EMGE++  KL   +P+    +VLLSN++A  G+WD+V +VR  M    + K  
Sbjct: 775 CRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDA 834

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS IE NG +  F+AG+ +     EI ++   + +++   GY PDT  V  D+ +EEK 
Sbjct: 835 GCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKT 894

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEKLAI +GLI  S    +R+ KNLRIC DCH AAK IS+  +REIVVRD  RF
Sbjct: 895 EQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRF 954

Query: 785 HHFKHGSCSCMDFW 798
           HHFK+G CSC D+W
Sbjct: 955 HHFKNGFCSCGDYW 968



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 246/536 (45%), Gaps = 79/536 (14%)

Query: 139 QASALRLSVFEGKLIHDHVLK-AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           QAS  R  +  G+ IH  V + A   +D  +   +I MY++CG    +R +FD     +L
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKM-------PE------------------------- 225
             WN++++ Y   +       ++ KM       P+                         
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208

Query: 226 --------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                    ++  SN+++  +G  G+V++A R+FK MP+++LVSW+++I  +  N + EE
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 278 ALVLFMNMIDHRVMV----DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             +L   M++    +    D   + +VL  CA    +  G  VH LA+K+ ++  + + N
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN 328

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MYS CG I  A+ +F   +N +++SWN+M+ G+   G + K    FD + +     
Sbjct: 329 ALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKT---FDLLRQ----- 380

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-I 452
              M++G                     +R DE T+++ +  C     L   K +H Y +
Sbjct: 381 ---MLAGGGD------------------LRADEVTILNAVPVCFEESVLPNLKELHCYSL 419

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
           ++  +  N ++    +  Y K G +  A  VF     K V+SWNALI G++ +     SL
Sbjct: 420 KQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSL 479

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           + + +MK SG+ P+  T   +L AC  +  +  G +  + +I  +RLE +S  Y  ++ L
Sbjct: 480 DAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLG-KEVHGLIIRNRLERDSFVYISLLSL 538

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQP 626
               G L  A  L ++M     + +W  ++    ++G  E    + R++V   +QP
Sbjct: 539 YIHCGELSTAHVLFDAME-DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQP 593



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/576 (22%), Positives = 263/576 (45%), Gaps = 86/576 (14%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASA 142
           S  +F  L   N F +N ++ +Y +  +    + ++ K++  + +  DN+T+P + +A A
Sbjct: 136 SRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACA 195

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
               V  G  +H  V+K     DV+V+N L++ Y   G +S A ++F   P  +LVSWNS
Sbjct: 196 GVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNS 255

Query: 203 ILAGYVNADNVEEAKFIYNKMPERN----------------------------------- 227
           ++  + +    EE   +  +M E++                                   
Sbjct: 256 MIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLA 315

Query: 228 --------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                   ++ +N+++ ++ + G + +A  +FK    K++VSW+ ++  +       +  
Sbjct: 316 MKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTF 375

Query: 280 VLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN----LQN 333
            L   M+     +  DEV +++ +  C   +V+     +H  ++K   + +++    + N
Sbjct: 376 DLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLK---QEFVHNNELVAN 432

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           A +  Y+ CG ++ A ++F +  +  + SWN+                            
Sbjct: 433 AFVASYAKCGSLSYAHRVFCSIRSKTVNSWNA---------------------------- 464

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
              +I GY+Q      +L  + +M+  G+ PD  T+ S++SAC+ + +L  GK +H  I 
Sbjct: 465 ---LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLII 521

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           +N L+ +S +  +L+ +Y+  G +  A  +F   E+K + SWN ++ G+  NG  +++L 
Sbjct: 522 RNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALS 581

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F +M   GV P EI+ + V GAC  +  +  G R  +    +  LE N+     ++D+ 
Sbjct: 582 LFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG-REAHGYALKCLLEDNAFIACSVIDMY 640

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + G + E+ ++   +     VA+W A++     HG
Sbjct: 641 AKNGSVMESFKVFNGLK-ERSVASWNAMVMGYGIHG 675



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 166/376 (44%), Gaps = 59/376 (15%)

Query: 18  VNAKPI-FKPTINLSILETHLQKCQSFKQ-FTQILSQMILTGLIADTFAASRLIKFSTDL 75
           +NA P+ F+ ++  ++ E H   C S KQ F           L+A+ F AS     S   
Sbjct: 396 LNAVPVCFEESVLPNLKELH---CYSLKQEFVHN------NELVANAFVASYAKCGS--- 443

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
                +SY+ ++F  + S     +N ++  Y Q + P+ ++  Y  M ++ +  D +T  
Sbjct: 444 -----LSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVC 498

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            L  A +   S+  GK +H  +++   + D +V  +L+++Y  CG+LS A  LFD     
Sbjct: 499 SLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDK 558

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMP------------------------------- 224
            LVSWN+++ GY+     E A  ++ +M                                
Sbjct: 559 TLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAH 618

Query: 225 --------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                   E N   + S+I ++ + G+V E+ ++F  + ++ + SW+A++  Y  +   +
Sbjct: 619 GYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAK 678

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNAL 335
           EA+ LF  M       DE+  + VL+AC +  +V  G T +  +    G+   +     +
Sbjct: 679 EAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACV 738

Query: 336 IHMYSSCGEITTAEKL 351
           I M    G++  A K+
Sbjct: 739 IDMLVRAGKLDEALKI 754


>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/566 (43%), Positives = 339/566 (59%), Gaps = 65/566 (11%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQ-NEMYEEALVLFMNMIDHRV---MVDEVVV 297
           G+++ A +LF ++PK D+  ++ +I  +         ++ +F++M+  RV   + +    
Sbjct: 36  GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMV--RVSGFLPNRYTF 93

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           V V  AC N   V  G  +   A+KIG+E  + + NA+I MY++ G +  A ++FD   +
Sbjct: 94  VFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLD 153

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL SWN MI GY+  G + +A+ +FD M E+DVVSW+T+I+GY Q   F E L LF EM
Sbjct: 154 QDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM 213

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
                                 VALDQG+WIH YI K+ +K+N  L  +L+DMY K G +
Sbjct: 214 -------------------LQTVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEI 254

Query: 478 DNALEVFHGTEEKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           D A +VFH  +E G    V  WNA+I G+AM+G + +++++F +MK   V+PN++TFV +
Sbjct: 255 DFAAKVFH--DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVAL 312

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H  LV+EG                                 +EAEE + +MPM+P
Sbjct: 313 LNACSHGKLVEEG---------------------------------REAEETVFNMPMAP 339

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           D   WGALLGAC+ H D E G+R+G+ + EL  DH G HVLL+N++++ G+WD+   VR 
Sbjct: 340 DATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQ 399

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            +   G  K PGCS IE NG+ H+FL GDR+HPQ  ++   LDEM  KLK  GY P+  E
Sbjct: 400 KIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGE 459

Query: 714 VAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
           V  DID EE KET L +HSEKLAIAFGLI   P   IRI+KNLR+C DCH A KFIS+ +
Sbjct: 460 VLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVY 519

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            REI+VRDR R+HHFK G CSC D+W
Sbjct: 520 KREIIVRDRIRYHHFKDGFCSCKDYW 545



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 188/406 (46%), Gaps = 86/406 (21%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMR 104
           Q  Q  + +I TGLI     A++L+K       F  +SY+ ++F  +  P+ FI+NTM++
Sbjct: 3   QIKQTHAHLITTGLILHPITANKLLKVLI-ASSFGSLSYAHQLFDQIPKPDVFIYNTMIK 61

Query: 105 AY-IQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           A+ +       ++ ++  M+  +  + N YT+  + +A    L V EG+ I  H +K G 
Sbjct: 62  AHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGL 121

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +S+++V N +I MYA  G +  AR++FD S   DL SWN ++ GYV +            
Sbjct: 122 ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGS------------ 169

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                              G +  A  +F EM ++D+VSW+ +I+ Y Q   ++EAL LF
Sbjct: 170 -------------------GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLF 210

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M+   V +D+                  G  +H    K  I+    L  +L+ MY+ C
Sbjct: 211 HEML-QTVALDQ------------------GRWIHVYIDKSEIKMNERLLASLLDMYAKC 251

Query: 343 GEITTAEKLF--DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
           GEI  A K+F  + G  L +  WN+MI G                               
Sbjct: 252 GEIDFAAKVFHDEYGLKLKVWPWNAMIGG------------------------------- 280

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           YA H +  E + LF +M+   + P++ T V++++AC+H   +++G+
Sbjct: 281 YAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGR 326



 Score = 43.9 bits (102), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 110/256 (42%), Gaps = 55/256 (21%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T++  Y+Q    ++A+ L+  ML   V +D                  +G+ IH ++ 
Sbjct: 190 WTTIIAGYVQVGCFKEALDLFHEMLQT-VALD------------------QGRWIHVYID 230

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLF-DESPV-LDLVSWNSILAGYVNADNVEEA 216
           K+    +  +  +L++MYA CG++  A K+F DE  + L +  WN+++ GY      +EA
Sbjct: 231 KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEA 290

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
             ++ +M                         ++ K  P K  V++ AL++     ++ E
Sbjct: 291 IDLFEQM-------------------------KVEKVSPNK--VTFVALLNACSHGKLVE 323

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG---IECYINLQN 333
           E       + +  +  D  +  ++L AC     ++ G  +  +  ++    I C++ L N
Sbjct: 324 EGREAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLAN 383

Query: 334 ALIHMYSSCGEITTAE 349
               +YS+ G+   A+
Sbjct: 384 ----LYSASGQWDEAK 395


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/586 (42%), Positives = 344/586 (58%), Gaps = 41/586 (6%)

Query: 215 EAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
           +A+ I + +P    + N+IA   +I       NV +A  +F  +   ++ + +A +    
Sbjct: 8   QAQLITSPIPSSVVDPNLIAVK-LIGACADHANVRQAALIFAHLASPNIFAHNATLKALA 66

Query: 271 QNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
           QN  +  A+  F + +   +    DE    SVL ACA L  V  G  +HA+  K G E  
Sbjct: 67  QNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESN 126

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           + ++N+LI MY                                K G +  AR LFD M  
Sbjct: 127 LFVRNSLIDMY-------------------------------FKAGYLLLARHLFDEMFV 155

Query: 389 KD--VVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQG 445
           +D  VV W+ MI+GYAQ++++S+ + +F  MQ  G + P++ TLVSV+ AC HL ALD G
Sbjct: 156 RDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLG 215

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KWI  +I +  + +   LG  L DMY K GC+  A  VF+  EE+ V SW+ +I G AM 
Sbjct: 216 KWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMY 275

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G AD++   F EM   G  PN++ F+G+L AC H GLV +G   FN+M +E+ + P  +H
Sbjct: 276 GHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEH 335

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGC+VDLL RAG L +AE++I SMPM P+V  WGALLG C+ + D   G+RV + ++EL 
Sbjct: 336 YGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELD 395

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
            DH G +V L+N+++S GR DD  + R  M   GV+K PGCS IE +  +HEF  GD +H
Sbjct: 396 SDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSH 455

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           P+ N+I +M+ E+  K+KL GY P T  V   ID+EEKE  L  HSEKLAIAFGLI+ S 
Sbjct: 456 PESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSE 515

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
              IR++KNLRICNDCH AAK IS    REI+VRDR RFHHFK G+
Sbjct: 516 GTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 49/369 (13%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
            Q+++  I + ++     A +LI    D      +  +  IFA L SPN F  N  ++A 
Sbjct: 9   AQLITSPIPSSVVDPNLIAVKLIGACAD---HANVRQAALIFAHLASPNIFAHNATLKAL 65

Query: 107 IQRNVPQQAICLYKLMLN--NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            Q +    AI  +   ++  N    D +T+  + +A A    V  G+ IH  V K GF+S
Sbjct: 66  AQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFES 125

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNK 222
           +++V N+LI+MY   G L  AR LFDE  V D  +V WN+++AGY   +   +A  ++  
Sbjct: 126 NLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRM 185

Query: 223 MPERNIIASNSMIV----------------------------------------LFGRKG 242
           M +   +  N + +                                        ++ + G
Sbjct: 186 MQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCG 245

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            + EA R+F +M ++D++SWS +I         +EA   F  M+D     ++VV + +L+
Sbjct: 246 CITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLT 305

Query: 303 ACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDL 360
           AC +  +VK G +  + +  + G+   +     ++ + S  GE+  AE +  +     ++
Sbjct: 306 ACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNV 365

Query: 361 ISWNSMISG 369
           I W +++ G
Sbjct: 366 IIWGALLGG 374



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 166/388 (42%), Gaps = 76/388 (19%)

Query: 192 SPVLDLVSWNSIL---AGYVNADNVEEAKFIYNKMP-ERNIIASNSMIVLFGRKGNVAEA 247
           +P  D  ++ S+L   AG  +  N ++   +  K   E N+   NS+I ++ + G +  A
Sbjct: 87  APNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLA 146

Query: 248 CRLFKEMPKKD--LVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEVVVVSVLSAC 304
             LF EM  +D  +V W+A+I+ Y QNE Y +A+ +F  M     V+ ++V +VSVL AC
Sbjct: 147 RHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPAC 206

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A+L  +  G  +     +  +   + L NAL  MY+ CG IT A ++F+     D+ISW 
Sbjct: 207 AHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISW- 265

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
                                         S +I G A +    E    F EM   G +P
Sbjct: 266 ------------------------------SIIICGLAMYGHADEAFGCFYEMLDCGEKP 295

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           ++   + +++ACTH   + +G                            L C  N ++  
Sbjct: 296 NDVVFMGLLTACTHAGLVKKG----------------------------LNCF-NTMDKE 326

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +G   K V  +  ++   +  G  DK+ +M S M    + PN I +  +LG CR      
Sbjct: 327 YGVSPK-VEHYGCVVDLLSRAGELDKAEDMISSMP---MKPNVIIWGALLGGCRIYRDSG 382

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            G R     + +H LE +S H G  V L
Sbjct: 383 RGQR-----VVQHILELDSDHSGSYVYL 405


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/465 (47%), Positives = 309/465 (66%)

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           A+IH ++  G++ +A++LFD      L+S  +M++ Y K G ++ AR LFD M E+D V 
Sbjct: 98  AIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 157

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI GY Q+   +E L LF  M     +P+E T++SV+SAC  L AL+ G+W+H+YI 
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
            NG++ N  +GT L+DMY K G +++A  VF   ++K V +WN++I+G+AM+G + ++L+
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 277

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F  M + G+ P  ITF+G+L AC H G V EG   FN M  E+ +EP  +HYGCMV+LL
Sbjct: 278 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 337

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG +++A EL+++M + PD   WG LLGAC+ HG   +GE++   LV+    + G ++
Sbjct: 338 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 397

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A+ G WD V  +R MM   GV K PGCS IE N  +HEFLAG   HP+  EI  
Sbjct: 398 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 457

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           ML+E+   LK  GY P T  V  DI + EKE +L  HSEKLAIAFGLI   P   I+I+K
Sbjct: 458 MLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVK 517

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH   K IS+   R+IVVRDR+RFHHF +GSCSC D+W
Sbjct: 518 NLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 179/396 (45%), Gaps = 64/396 (16%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  + + G D    +N  L   YA  G L  +  LF  +    +  W +I+ G+    +
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           V  A+ +++ MPE+++++  +M+  + + G +  A  LF  M ++D V W+ +I  Y QN
Sbjct: 109 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 168

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            M  EALVLF  M+  +   +EV V+SVLSAC  L  +++G  VH+     GI+  +++ 
Sbjct: 169 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 228

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
            AL+ MYS CG +  A  +FD   + D+++WNSMI GY                      
Sbjct: 229 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY---------------------- 266

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                    A H    E L LF  M   G+ P   T + ++SAC H   + +G W     
Sbjct: 267 ---------AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEG-W----- 311

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
                           D++       N ++  +G E K +  +  ++      G  +++ 
Sbjct: 312 ----------------DIF-------NKMKDEYGIEPK-IEHYGCMVNLLGRAGHVEQAY 347

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           E+   M    + P+ + +  +LGACR  G +  G +
Sbjct: 348 ELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEK 380



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 15/256 (5%)

Query: 61  DTFAASRLIKFSTDLLPFI---EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           DT     L+  +  L  +    E+  +  +F  +E  +G  +N M+  Y Q  +P +A+ 
Sbjct: 117 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 176

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L++ ML      +  T   +  A     ++  G+ +H ++   G   +V+V   L++MY+
Sbjct: 177 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYS 236

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----S 233
            CG L  AR +FD+    D+V+WNS++ GY      +EA  ++  M    +  +N     
Sbjct: 237 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIG 296

Query: 234 MIVLFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++   G  G V E   +F +M      +  +  +  +++   +    E+A  L  NM   
Sbjct: 297 ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM--- 353

Query: 289 RVMVDEVVVVSVLSAC 304
            +  D V+  ++L AC
Sbjct: 354 NIEPDPVLWGTLLGAC 369


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 304/468 (64%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L N ++  Y S  E+  A K+FD     DL+SWN+MI GY   G V  AR +FD   ++D
Sbjct: 25  LCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRD 84

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
             SWS+MIS YA+  +  E L L+ EM    I PD  TLVSV+SAC+ L AL  G  +H 
Sbjct: 85  AFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHR 144

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++  N ++++  LGT LIDMY K G +++A  VF    EK V +W+++IIG A +GL  +
Sbjct: 145 FVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHE 204

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           SL +FS+M   G+ PN +TFVGVL AC H+GLV EG ++F SM + H +EP  +HYGCMV
Sbjct: 205 SLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMV 264

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G ++EA +LI SM   PD   W ALLGAC+ H + E+ E    KL  L P  DG
Sbjct: 265 DLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDG 324

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI+A    W+ V E+R  + R  + +IPG S IE +  IHEF++GDR HP+  E
Sbjct: 325 HYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKE 384

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  +L+EM  +LK  GY P T  V  DID++ KE +L  HSEKLAIAF L+T    + IR
Sbjct: 385 IYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIR 444

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR C DCH+A K IS  +DR+++VRDR+RFHHF  G CSC D+W
Sbjct: 445 ITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 166/327 (50%), Gaps = 33/327 (10%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSM 234
           MYA  G +  AR  FDE+P+ D+   N +LA YV+   V EA+ +++ MP R++++ N+M
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I  +  +G V  A  +F     +D  SWS++IS Y ++   +EAL L+  M    ++ D 
Sbjct: 61  IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           + +VSV+SAC++L  +  G  VH       IE  + L  ALI MY+ CG+I +A+++FD 
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR 180

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               D+ +W+SM                               I G A H    E+LSLF
Sbjct: 181 MPEKDVQTWSSM-------------------------------IIGLANHGLGHESLSLF 209

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMK 473
            +M   G++P+  T V V+ ACTH+  + +G K+  +    +G++        ++D+  +
Sbjct: 210 SKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGR 269

Query: 474 LGCVDNALEVFHG-TEEKGVSSWNALI 499
            G V+ A ++    T E     W AL+
Sbjct: 270 SGHVEEARQLIRSMTFEPDTIIWRALL 296



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 44/244 (18%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  + +IF   E  + F +++M+ AY +    ++A+ L++ M   ++  D  T   +  
Sbjct: 69  EVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVS 128

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  G  +H  V     + D+ +   LI+MYA CGD+ +A+++FD  P  D+ +
Sbjct: 129 ACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQT 188

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------P----------------------------- 224
           W+S++ G  N     E+  +++KM      P                             
Sbjct: 189 WSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMN 248

Query: 225 -----ERNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
                E  +     M+ L GR G+V EA +L + M  + D + W AL+     ++  E+ 
Sbjct: 249 EVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIA 308

Query: 276 EEAL 279
           EEA+
Sbjct: 309 EEAM 312


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 380/716 (53%), Gaps = 66/716 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL---LAQASA 142
           ++F  L   +   +N ++  + +     +A   Y  +L +  GV      +   +  ASA
Sbjct: 98  RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASA 157

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           L      G+ +H  +L+ GF +  +  + L++MYA  G +  AR++FDE           
Sbjct: 158 LGDRAL-GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDE----------- 205

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
                               M  +N++  N+MI    R   VAEA  LF+ + ++D ++W
Sbjct: 206 --------------------MEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITW 245

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + +++   QN +  EAL +F  M    V +D+    S+L+AC  L  ++ G  +HA   +
Sbjct: 246 TTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITR 305

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
              E  + + +AL+ MYS                               KC SV  A A+
Sbjct: 306 TCYEDNVFVGSALVDMYS-------------------------------KCRSVRLAEAV 334

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F  M+ K+++SW+ MI GY Q+    E + +F EMQ  GI+PD+ TL SVIS+C +L +L
Sbjct: 335 FRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASL 394

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           ++G   H     +GL+    +   L+ +Y K G +++A  +F         SW AL++G+
Sbjct: 395 EEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGY 454

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           A  G A +++++F +M   GV P+ +TF+GVL AC   GLVD+G  +F+SM Q+H + P 
Sbjct: 455 AQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPL 514

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
             HY CM+DL  R+G LK+AEE I+ MP  PD   W  LL AC+  GD E+G+     L+
Sbjct: 515 DDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLL 574

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           +L P +   +VLL ++HASKG W+DV ++R  M  R V K PGCS I+    +H F A D
Sbjct: 575 KLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 634

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
           ++HP    I   L  +  K+  EGY PD   V  D+   EK   L  HSEKLAIAFGLI 
Sbjct: 635 QSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIF 694

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + P  PIRI+KNLR+C DCH A KFIS+   R+I+VRD  RFH F +G CSC DFW
Sbjct: 695 VPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 249/467 (53%), Gaps = 13/467 (2%)

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVA 245
           R L   SP   L   N++L  Y ++  +  A+ +++ MP RN++  NS++    R G V 
Sbjct: 38  RTLPHPSPTYLL---NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVR 94

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV--DEVVVVSVLSA 303
           +  RLF  +P++D VS++AL++ + +   +  A   ++ ++     V    + +  V+  
Sbjct: 95  DMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMV 154

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            + L     G  VH   +++G   Y    + L+ MY+  G I  A ++FD     +++  
Sbjct: 155 ASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMC 214

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+MI+G L+C  V +ARALF+A+ E+D ++W+TM++G  Q+   SE L +F  M+  G+ 
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
            D+ T  S+++AC  L AL++GK IHAYI +   + N  +G+ L+DMY K   V  A  V
Sbjct: 275 IDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAV 334

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F     K + SW A+I+G+  NG  ++++ +FSEM++ G+ P++ T   V+ +C ++  +
Sbjct: 335 FRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASL 394

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           +EG + F+ +     L P       +V L G+ G +++A  L + M    D  +W AL+ 
Sbjct: 395 EEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVM 452

Query: 604 ACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS----KGR 644
              + G  +    +  K++   ++PD   F  +LS    S    KGR
Sbjct: 453 GYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR 499


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 342/555 (61%), Gaps = 34/555 (6%)

Query: 247 ACRLFKEMPKK-DLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSAC 304
           A ++F ++ K  ++  W+ LI  Y +      A  L+  M +   V  D      ++ A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             +  V+ G ++H++ ++ G    I +QN+L+H+Y++C                      
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC---------------------- 169

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
                    G V  A  +FD M EKD+V+W+++I+G+A++ +  E L+L+ EM   GI+P
Sbjct: 170 ---------GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 220

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T+VS++SAC  + AL  GK +H Y+ K GL  N      L+D+Y + G V+ A  +F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLV 543
               +K   SW +LI+G A+NG   +++E+F  M+ + G+ P EITFVG+L AC H G+V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            EG  +F  M +E+++EP  +H+GCMVDLL RAG +K+A E I+SMPM P+V  W  LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC  HGD ++ E    ++++L+P+H G +VLLSN++AS+ RW DV ++R  M+R GV K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PG S++E    +HEFL GD++HPQ + I   L EM  +L+ EGY P    V  D+++EEK
Sbjct: 461 PGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK 520

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  +  HSEK+AIAF LI+    +PI ++KNLR+C DCH A K +S+ ++REIVVRDR R
Sbjct: 521 ENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580

Query: 784 FHHFKHGSCSCMDFW 798
           FHHFK+GSCSC D+W
Sbjct: 581 FHHFKNGSCSCQDYW 595



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 83/461 (18%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL-IADTFAASRL 68
           +S   ++SV   P+ +  INL  L+T+     S  +  QI +  I  G+ I+D      L
Sbjct: 1   MSPFSETSVLLLPMVEKCINL--LQTY--GVSSITKLRQIHAFSIRHGVSISDAELGKHL 56

Query: 69  IKFSTDLLPFIEMSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNN 126
           I +   L     MSY+ K+F+ +E P N FI+NT++R Y +      A  LY+ M ++  
Sbjct: 57  IFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL 116

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           V  D +TYP L +A      V  G+ IH  V+++GF S +YV N+L+++YA CGD+++A 
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE--------------- 225
           K+FD+ P  DLV+WNS++ G+      EEA  +Y +M      P+               
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 226 ------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                             RN+ +SN ++ L+ R G V EA  LF EM  K+ VSW++LI 
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVD-EVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
               N   +EA+ LF  M     ++  E+  V +L AC+           H   VK G E
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS-----------HCGMVKEGFE 345

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            +  ++           E     ++   G  +DL++         + G V+KA     +M
Sbjct: 346 YFRRMRE----------EYKIEPRIEHFGCMVDLLA---------RAGQVKKAYEYIKSM 386

Query: 387 -IEKDVVSWSTMISGYAQHD-----QFSETLSLFMEMQHHG 421
            ++ +VV W T++     H      +F+    L +E  H G
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/603 (40%), Positives = 345/603 (57%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           + S +     + N+E+A+ I+  +            NS+I ++ +  +V +A  +F +M 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +KD+VSW++LI+ Y QN+M  EA+ L   M+  R   +     S+L A         G  
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HALAVK G    + + +AL+ MY+                               +CG 
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYA-------------------------------RCGK 202

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +ISG+A+       L  F EM  +G      T  SV S+
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              L AL+QGKW+HA++ K+  K+ + +G TL+DMY K G + +A +VF   + K + +W
Sbjct: 263 IARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTW 322

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N+++  FA  GL  +++  F EM+KSGV  N+ITF+ +L AC H GLV EG R+F  M++
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMK 381

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP   HY  +V LLGRAG+L  A   I  MPM P  A WGALL AC+ H + ++G+
Sbjct: 382 EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + EL PD  G  VLL NI+AS G+WD    VR MM   GV K P CS +E    +
Sbjct: 442 FAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSV 501

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THPQ  EI  M  E++KK++ EGY PD   V   +D +EKE  L  HSEKLA
Sbjct: 502 HMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLA 561

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A K+IS+ F REIVVRD +RFHHF  GSCSC 
Sbjct: 562 LAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCG 621

Query: 796 DFW 798
           D+W
Sbjct: 622 DYW 624



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 178/412 (43%), Gaps = 71/412 (17%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y     A A   ++ + + IH H+  + F  D +++N+LI+MY  C  +  AR +FD+  
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 194 VLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP------------------- 224
             D+VSW S++AGY   D   EA          +F  N                      
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 225 ----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALIS + +   
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            E AL+ F  M+ +          SV S+ A L  ++ G  VHA  +K   +    + N 
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY+  G +  A K+FD   N DL++WNSM                            
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSM---------------------------- 325

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
              ++ +AQ+    E +S F EM+  G+  ++ T + +++AC+H   + +GK     +++
Sbjct: 326 ---LTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKE 382

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMN 505
             L+       T++ +  + G ++ AL  +F    E   + W AL+    M+
Sbjct: 383 YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 134/289 (46%), Gaps = 39/289 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++  Y Q ++P +AI L   ML      + +T+  L +A+        G+ IH   +
Sbjct: 120 WTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAV 179

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G+  DVYV + L++MYA CG +  A  +FD+    + VSWN++++G+    + E A  
Sbjct: 180 KCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALM 239

Query: 219 IYNKMPERNIIAS---------------------------------------NSMIVLFG 239
            + +M      A+                                       N+++ ++ 
Sbjct: 240 TFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYA 299

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A ++F  +  KDLV+W+++++ + Q  + +EA+  F  M    V ++++  + 
Sbjct: 300 KSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLC 359

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           +L+AC++  +VK G     +  +  +E  I+    ++ +    G +  A
Sbjct: 360 ILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYA 408



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 4/184 (2%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  +  +F  L+S NG  +N ++  + ++   + A+  +  ML N     ++TY  +  
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFS 261

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           + A   ++ +GK +H HV+K+      +V NTL++MYA  G +  ARK+FD     DLV+
Sbjct: 262 SIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVT 321

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           WNS+L  +      +EA   + +M +     N I    ++      G V E  R F+ M 
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK 381

Query: 256 KKDL 259
           + DL
Sbjct: 382 EYDL 385



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P      S I+AC     L+  + IHA++  +    ++ L  +LI MY K   V +A 
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            VF     K + SW +LI G+A N +  +++ +   M K    PN  TF  +L A     
Sbjct: 107 NVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAG--A 164

Query: 542 LVDEGH-RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
             D G  R  +++  +     +      ++D+  R G +  A  + + +  S +  +W A
Sbjct: 165 YADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWNA 223

Query: 601 LLGACKKHGDHE 612
           L+    + GD E
Sbjct: 224 LISGFARKGDGE 235


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/682 (36%), Positives = 390/682 (57%), Gaps = 18/682 (2%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++FA +   +   +N M+  Y        A  L++ +       DNY+Y  L  A A+  
Sbjct: 59  RLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALAVSS 114

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+ + + + D +     DS  Y  N +I+ +A  G +S AR  FD +P  D VSWN +LA
Sbjct: 115 SLADARGLFDEMPVR--DSVTY--NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLA 170

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            YV    VEEA+ ++N   E ++I+ N+++  + + G ++EA  LF  MP +D+VSW+ +
Sbjct: 171 AYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIG 324
           +S Y +     EA  LF    D   + D     +V+S  A   +++    V  A+  +  
Sbjct: 231 VSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 286

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +       NA++  Y     +  A++LF+     ++ SWN+M++GY + G +E+A+A+FD
Sbjct: 287 VS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M +KD VSW+ M++ Y+Q     ETL LF+EM   G   + +    V+S C  + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  +H  + + G  +   +G  L+ MY K G +++A   F   EE+ V SWN +I G+A 
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G   ++LE+F  M+ +   P++IT VGVL AC H GLV++G  +F SM  +  +    +
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DLLGRAG L EA +L++ MP  PD   WGALLGA + H + E+G     K+ EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P++ G +VLLSNI+AS G+W D  ++R MM  RGV K+PG S IE    +H F AGD  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP+  +I   L+++  ++K  GY   T  V  D+++EEKE  L  HSEKLA+A+G++ I 
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIP 701

Query: 745 PPNPIRIMKNLRICNDCHTAAK 766
           P  PIR++KNLR+C DCH A K
Sbjct: 702 PGRPIRVIKNLRVCGDCHNAFK 723



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 211/455 (46%), Gaps = 32/455 (7%)

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            + +V  +N  I  +   G ++ A +LF   P     ++N++LAGY     +  A  ++ 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
            +P  +  + N+++       ++A+A  LF EMP +D V+++ +IS +  + +    + L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL----VSL 149

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
             +  D     D V    +L+A      V+    +     +  +  +    NAL+  Y  
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISW----NALMSGYVQ 205

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
            G+++ A +LFD     D++SWN M+SGY + G + +AR LFDA   +DV +W+ ++SGY
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 265

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
           AQ+    E   +F  M       +  +  ++++A      +D+ K +      N +   +
Sbjct: 266 AQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELF-----NMMPCRN 316

Query: 462 ILG-TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
           +    T++  Y + G ++ A  VF    +K   SW A++  ++  G ++++L++F EM +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVD-----LLG 574
            G   N   F  VL  C  +  ++ G       +Q H RL       GC V      +  
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECG-------MQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + G +++A    E M    DV +W  ++    +HG
Sbjct: 430 KCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/558 (41%), Positives = 340/558 (60%), Gaps = 32/558 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  AC +F+++ +     ++ +I  Y      E AL L+  M++  V  D     ++ 
Sbjct: 33  GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALF 92

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA+L  ++ G  +H    K G+E                                DL 
Sbjct: 93  KACASLRSIEEGMQIHGYIFKRGLEG-------------------------------DLF 121

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
             NS+I+ Y KCG +E + ++F+ M  +DV SWS +I+ +A    +SE LS+F EM   G
Sbjct: 122 VQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREG 181

Query: 422 -IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
             RP+E+ LVSV+SACTHL ALD G+  H  + +N  ++N I+ T+LIDMY+K GC++  
Sbjct: 182 SCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKG 241

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           L +F    +K   S++ +I G AM+G   ++L++FS+M + G+ P+++ ++GVL AC H 
Sbjct: 242 LSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHA 301

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLVDEG + FN M  EH +EP  +HYGC+V L+GRAGML +A E I SMP+ P+   W  
Sbjct: 302 GLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRG 361

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL ACK H + E+GE   + L EL   + G +V+LSN++A   RW+DV ++R  M R+G 
Sbjct: 362 LLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGF 421

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            + PG S+++    I++F++ D +HPQ   +  M+ +M  +LK EGY+PDT +V FD+D+
Sbjct: 422 TQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDE 481

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK   L  HS+KLA+AF LI  S   PIRI +NLR+CNDCHT  K IS  + REI VRD
Sbjct: 482 EEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRD 541

Query: 781 RHRFHHFKHGSCSCMDFW 798
           R+RFHHFK G+CSC D+W
Sbjct: 542 RNRFHHFKDGTCSCRDYW 559



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 196/427 (45%), Gaps = 55/427 (12%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           ++F Q+ +Q++      ++F AS L+  +  L  +  M Y+  IF  ++ P  F FNTM+
Sbjct: 2   EEFKQVHAQVLKW---ENSFCASNLVA-TCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           R Y+     + A+ LY  ML   V  DN+TYP L +A A   S+ EG  IH ++ K G +
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            D++V N+LINMY  CG +  +  +F+     D+ SW++I+A + +     E   ++ +M
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177

Query: 224 P----------------------------------------ERNIIASNSMIVLFGRKGN 243
                                                    E N+I   S+I ++ + G 
Sbjct: 178 SREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGC 237

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           + +   LF+ M KK+ +S+S +I+    +    EAL +F +M++  +  D+VV + VLSA
Sbjct: 238 IEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSA 297

Query: 304 CANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFDAGHNLDLI 361
           C +  +V  G    + + ++ GIE  I     ++H+    G +  A E +       + +
Sbjct: 298 CNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEV 357

Query: 362 SWNSMISGY-----LKCGSV-EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            W  ++S       L+ G +  K+    ++    D V  S M   YA+  ++ +   +  
Sbjct: 358 VWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNM---YARAKRWEDVAKIRT 414

Query: 416 EMQHHGI 422
           EM   G 
Sbjct: 415 EMARKGF 421


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/555 (41%), Positives = 332/555 (59%)

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           +  A +LF+     ++  +++LI  +     Y +A+ LF  M+   V+ D   V ++L A
Sbjct: 75  IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKA 134

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C     + +G  VH L +K G+    ++   L+ +Y  CG +  A K+FD     D+++ 
Sbjct: 135 CVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVAC 194

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
             MI     CG VE+A  +F+ M  +D V W+ +I G  ++ +F+  L +F EMQ  G+ 
Sbjct: 195 TVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVE 254

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+E T V V+SAC  L AL+ G+WIHAY+RK G+++N  +   LI+MY + G +D A  +
Sbjct: 255 PNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQAL 314

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F G   K VS++N++I G A++G + +++E+FSEM K  V PN ITFVGVL AC H GLV
Sbjct: 315 FDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLV 374

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           D G   F SM   H +EP  +HYGCMVD+LGR G L+EA + I  M +  D     +LL 
Sbjct: 375 DLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLS 434

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           ACK H +  MGE+V + L E      G  ++LSN +AS GRW    EVR  M + G++K 
Sbjct: 435 ACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKE 494

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PGCS IE N  IHEF +GD  HP+   I   L+E+    K EGY P T     DID E+K
Sbjct: 495 PGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQK 554

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSE+LAI +GL++      +R+ KNLRIC+DCH   K I++   R+IVVRDR+R
Sbjct: 555 ELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNR 614

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF++G CSC D+W
Sbjct: 615 FHHFENGECSCKDYW 629



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 217/520 (41%), Gaps = 98/520 (18%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           K    I    I T    D F A  L++    +  +I+  ++ K+F   ++PN +++ +++
Sbjct: 41  KHVQSIHCHAIKTRTSQDPFVAFELLRVYCKV-NYID--HAIKLFRCTQNPNVYLYTSLI 97

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
             ++       AI L+  M+  +V  DNY    + +A  L+ ++  GK +H  VLK+G  
Sbjct: 98  DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            D  +   L+ +Y  CG L  ARK+FD                                M
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFD-------------------------------GM 186

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
           PER+++A   MI      G V EA  +F EM  +D V W+ +I    +N  +   L +F 
Sbjct: 187 PERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFR 246

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V  +EV  V VLSACA L  ++ G  +HA   K G+E    +  ALI+MYS CG
Sbjct: 247 EMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCG 306

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           +I  A+ LFD     D+ ++NSM                               I G A 
Sbjct: 307 DIDEAQALFDGVRVKDVSTYNSM-------------------------------IGGLAL 335

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           H +  E + LF EM    +RP+  T V V++AC+H   +D G                  
Sbjct: 336 HGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLG------------------ 377

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
                      G +  ++E+ HG E + V  +  ++      G  +++ +    M   GV
Sbjct: 378 -----------GEIFESMEMIHGIEPE-VEHYGCMVDILGRVGRLEEAFDFIGRM---GV 422

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
             ++     +L AC+    +  G +    + + +R++  S
Sbjct: 423 EADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGS 462



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 134/271 (49%), Gaps = 33/271 (12%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K   ++ A  LF      +V  ++++I G+     +++ ++LF +M    +  D   +
Sbjct: 69  YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAV 128

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            +++ AC    AL  GK +H  + K+GL ++  +   L+++Y K G +++A ++F G  E
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPE 188

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFS-------------------------------EM 518
           + V +   +I      G+ ++++E+F+                               EM
Sbjct: 189 RDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM 248

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +  GV PNE+TFV VL AC  +G ++ G R  ++ +++  +E N    G ++++  R G 
Sbjct: 249 QVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRKCGVEVNRFVAGALINMYSRCGD 307

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + EA+ L + + +  DV+T+ +++G    HG
Sbjct: 308 IDEAQALFDGVRVK-DVSTYNSMIGGLALHG 337



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IH +  K     +  +   L+ +Y K+  +D+A+++F  T+   V  + +LI GF   G 
Sbjct: 46  IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEPNSK 564
              ++ +F +M +  V  +      +L AC   R +G   E H     ++ +  L  +  
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVH----GLVLKSGLGLDRS 161

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
               +V+L G+ G+L++A ++ + MP   DV     ++G+C
Sbjct: 162 IALKLVELYGKCGVLEDARKMFDGMP-ERDVVACTVMIGSC 201


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/740 (34%), Positives = 408/740 (55%), Gaps = 73/740 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+ +   +Q  +  +A+ L++ M ++   +++YT   + Q  A    +  G+ +H  +L
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G + ++  N  L+ MYA CG + +A ++F E    D +SWNS+L+ YV      EA  
Sbjct: 293 KCGTEFNIQCNALLV-MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 219 IYNKM------PERNIIAS---------------------------------NSMIVLFG 239
            + +M      P+   I S                                 N+++ ++ 
Sbjct: 352 FFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYI 411

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +  +V  + R+F  M  KD VSW+ +I+CY Q+  Y EA+  F       + VD +++ S
Sbjct: 412 KCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGS 471

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L AC+ L  +     VH+ A++ G+                                LD
Sbjct: 472 ILEACSGLKSISLLKQVHSYAIRNGL--------------------------------LD 499

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           LI  N +I  Y +CG V  A  +F+ + +KD+V+W++M++ +A++    E ++LF +M +
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI+PD   LV ++ A   L +L +GK IH ++ +    +   + ++L+DMY   G ++ 
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNY 619

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           AL+VF   + K V  W A+I    M+G   +++ +F  M ++GV+P+ ++F+ +L AC H
Sbjct: 620 ALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSH 679

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
             LVDEG  + + M+ +++L+P  +HY C+VDLLGR+G  +EA + I+SMP+ P    W 
Sbjct: 680 SKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWC 739

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC+ H +HE+      KL+EL+PD+ G +VL+SN+ A  G+W++V E+R  M  +G
Sbjct: 740 ALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQG 799

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG-YAPDTLEVAFDI 718
           + K P CS IE    +H F A D +H     I   L E+ +KL+ EG Y  DT  V  D+
Sbjct: 800 LRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDV 859

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            +EEK   L RHSE+LAI+FGLI+ +   P+RI KNLR+C DCH   K +S+ F+REIVV
Sbjct: 860 SEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVV 919

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF  G+CSC DFW
Sbjct: 920 RDANRFHHFSGGTCSCGDFW 939



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 154/586 (26%), Positives = 260/586 (44%), Gaps = 103/586 (17%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF---DSDVYVNNTLINMYAVCGDLSAA 185
            D+Y + L     A+R +V EG+ +H H +  G    D   ++   L+ MY  CG L  A
Sbjct: 55  TDHYGWVL--DLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
            +LFD  P   + SWN+++   +++    EA  +Y  M                      
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 225 ----------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM-PKKDLVS 261
                                 +R+ + +N+++ ++ + G +  A R+F+ M   +D+ S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W++ IS   QN M+ EAL LF  M      ++    V VL  CA L  +  G  +HA  +
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 322 KIGIECYINLQ-NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           K G E   N+Q NAL+ MY+ CG + +A ++F    + D ISWNSM+S Y+         
Sbjct: 293 KCGTE--FNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYV--------- 341

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                                 Q+  ++E +  F EM  +G  PD A +VS++SA  HL 
Sbjct: 342 ----------------------QNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLG 379

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
            L  G+ +HAY  K  L  +  +  TL+DMY+K   V+ +  VF     K   SW  +I 
Sbjct: 380 RLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIA 439

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEH 557
            +A +    +++  F   +K G+  + +    +L AC   + + L+ + H +    I+  
Sbjct: 440 CYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSY---AIRNG 496

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG-DHEMGER 616
            L+   K+   ++D+ G  G +  A  + E M    D+ TW +++    ++G  HE    
Sbjct: 497 LLDLILKNR--IIDIYGECGEVCYALNIFE-MLDKKDIVTWTSMVNCFAENGLLHEAVAL 553

Query: 617 VGRKL-VELQPDHDGFHVLLSNIHA----SKGRWDDVLEVRGMMVR 657
            G+ L   +QPD      +L  I      +KG+     E+ G ++R
Sbjct: 554 FGKMLNAGIQPDSVALVGILGAIAGLSSLTKGK-----EIHGFLIR 594



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 69/402 (17%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + ++F  +   +   +N+M+  Y+Q  +  +AI  +  M+ N    D+     L  A   
Sbjct: 318 ALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGH 377

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              +  G+ +H + +K   DSD+ + NTL++MY  C  +  + ++FD   + D VSW +I
Sbjct: 378 LGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTI 437

Query: 204 LAGYVNADNVEEAKFIYNKMPERNI----------------------------------- 228
           +A Y  +    EA   +    +  I                                   
Sbjct: 438 IACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL 497

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
              I  N +I ++G  G V  A  +F+ + KKD+V+W+++++C+ +N +  EA+ LF  M
Sbjct: 498 LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM 557

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           ++  +  D V +V +L A A L+ +  G  +H   ++        + ++L+ MYS CG +
Sbjct: 558 LNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSM 617

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A K+FD     D++ W +                               MI+    H 
Sbjct: 618 NYALKVFDEAKCKDVVLWTA-------------------------------MINATGMHG 646

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
              + + +F  M   G+ PD  + ++++ AC+H   +D+GK+
Sbjct: 647 HGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKF 688



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 52/299 (17%)

Query: 26  PTINLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           P +  SILE     C   K  +   Q+ S  I  GL+ D    +R+I    +     E+ 
Sbjct: 466 PMMMGSILEA----CSGLKSISLLKQVHSYAIRNGLL-DLILKNRIIDIYGEC---GEVC 517

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+  IF  L+  +   + +M+  + +  +  +A+ L+  MLN  +  D+     +  A A
Sbjct: 518 YALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIA 577

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              S+ +GK IH  +++  F  +  V ++L++MY+ CG ++ A K+FDE+   D+V W +
Sbjct: 578 GLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTA 637

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI------------IASNSMIV-------------- 236
           ++       + ++A +I+ +M E  +              S+S +V              
Sbjct: 638 MINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKY 697

Query: 237 --------------LFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALV 280
                         L GR G   EA +  K MP +   V W AL+     ++ +E A++
Sbjct: 698 KLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMI 756


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/740 (34%), Positives = 403/740 (54%), Gaps = 72/740 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY       +A+ L+  M   ++  + YT+    QA      + +G  IH  VL
Sbjct: 250 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 309

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K+ +  +V+V N LI MYA  G +  A  +F      D +SWNS+L+G+V      EA  
Sbjct: 310 KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQ 369

Query: 219 IYNKMPER----NIIASNSMIVLFGRKGNV-----------------------------A 245
            Y++M +     +++A  S+I    R GN                              A
Sbjct: 370 FYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYA 429

Query: 246 EACRL------FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + C +      F +MP KD+VSW+ +I+ + QN  +  AL LF  +    + +D +++ S
Sbjct: 430 KFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISS 489

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L AC+ L ++ +   +H+  ++ G+                                 D
Sbjct: 490 ILLACSGLKLISSVKEIHSYIIRKGLS--------------------------------D 517

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+  N ++  Y +CG+V+ A  +F+ +  KDVVSW++MIS Y  +   +E L LF  M+ 
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 577

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+ PD  +LVS++SA   L AL +GK IH ++ + G  +   L +TL+DMY + G ++ 
Sbjct: 578 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 637

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           +  VF+    K +  W ++I  + M+G    ++++F  M+   + P+ I FV VL AC H
Sbjct: 638 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 697

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL++EG R   SM  E++LEP  +HY C+VDLLGRA  L+EA + ++ M + P    W 
Sbjct: 698 SGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 757

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC+ H + E+GE   +KL+E+ P++ G +VL+SN+++++ RW DV  VR  M   G
Sbjct: 758 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASG 817

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDI 718
           + K PGCS IE    +H F+A D++HPQ  EI + L ++ +KL  E GY   T  V  + 
Sbjct: 818 LKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNA 877

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            +EEK   L+ HSE+LAIA+G++T      +RI KNLR+C DCH   K IS+ F+RE+V+
Sbjct: 878 KEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVM 937

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHFK G CSC D W
Sbjct: 938 RDANRFHHFKGGVCSCGDVW 957



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 305/645 (47%), Gaps = 83/645 (12%)

Query: 37  LQKCQSFKQFT---QILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L+ C S K  +   Q+ + MI +  L    F ++RL+         ++     K+F  + 
Sbjct: 85  LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAE---KLFDGMP 141

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
               F +N M+ AY+    P  ++ LY+ M  + + +D  T+P + +A  L      G  
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGYVNAD 211
           +H   +K G+ S V+V N+++ MY  C DL+ AR+LFD  P   D+VSWNS+++ Y +  
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 212 NVEEAKFIYNKMPER---------------------------------------NIIASN 232
              EA  ++ +M +                                        N+  +N
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 321

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ R G + EA  +F  M   D +SW++++S + QN +Y EAL  +  M D     
Sbjct: 322 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 381

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D V V+S+++A A       G  +HA A+K G++  + + N+L+ MY+    +   + +F
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 441

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D   + D++SW ++I+G                               +AQ+   S  L 
Sbjct: 442 DKMPDKDVVSWTTIIAG-------------------------------HAQNGSHSRALE 470

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF E+Q  GI  D   + S++ AC+ L  +   K IH+YI + GL  + +L   ++D+Y 
Sbjct: 471 LFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYG 529

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           + G VD A  +F   E K V SW ++I  +  NGLA+++LE+F  MK++GV P+ I+ V 
Sbjct: 530 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 589

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L A   +  + +G      +I++  +   S     +VD+  R G L+++  +   +  +
Sbjct: 590 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA-STLVDMYARCGTLEKSRNVFNFI-RN 647

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
            D+  W +++ A   HG       + R++ +  + PDH  F  +L
Sbjct: 648 KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 692



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 215/452 (47%), Gaps = 42/452 (9%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  S  ++ ++G+ G + +A +LF  MP K + +W+A+I  Y  N     +L L+  M 
Sbjct: 113 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              + +D      +L AC  L   + G  VH LA+K G    + + N+++ MY+      
Sbjct: 173 VSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYT------ 226

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHD 405
                                    KC  +  AR LFD M EK DVVSW++MIS Y+ + 
Sbjct: 227 -------------------------KCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           Q  E L LF EMQ   + P+  T V+ + AC     + QG +IHA + K+   IN  +  
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 321

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI MY + G +  A  +F+  ++    SWN+++ GF  NGL  ++L+ + EM+ +G  P
Sbjct: 322 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 381

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +  + ++ A    G    G +  ++   ++ L+ + +    +VD+  +   +K  + +
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCI 440

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG-- 643
            + MP   DV +W  ++    ++G H     + R+ V+L+       ++ S + A  G  
Sbjct: 441 FDKMP-DKDVVSWTTIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLK 498

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
               V E+   ++R+G+       ++  NGI+
Sbjct: 499 LISSVKEIHSYIIRKGL-----SDLVLQNGIV 525



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 227/506 (44%), Gaps = 77/506 (15%)

Query: 37  LQKCQ--SF-KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C+  SF KQ   I + ++ +    + F A+ LI        F +M  +  IF  ++ 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYAR---FGKMGEAANIFYNMDD 345

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +N+M+  ++Q  +  +A+  Y  M +     D      +  ASA   +   G  I
Sbjct: 346 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI 405

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN- 212
           H + +K G DSD+ V N+L++MYA    +     +FD+ P  D+VSW +I+AG+    + 
Sbjct: 406 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 465

Query: 213 ----------------------------------VEEAKFIYNKMPER---NIIASNSMI 235
                                             +   K I++ +  +   +++  N ++
Sbjct: 466 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 525

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++G  GNV  A R+F+ +  KD+VSW+++ISCY  N +  EAL LF  M +  V  D +
Sbjct: 526 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 585

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VS+LSA A+L+ +K G  +H   ++ G     +L + L+ MY+ CG +  +  +F+  
Sbjct: 586 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 645

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            N DL+ W SMI+ Y   G     RA  D                            LF 
Sbjct: 646 RNKDLVLWTSMINAYGMHGC---GRAAID----------------------------LFR 674

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+   I PD    V+V+ AC+H   +++G +++ +   +  L+        L+D+  + 
Sbjct: 675 RMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRA 734

Query: 475 GCVDNALEVFHGTE-EKGVSSWNALI 499
             ++ A +   G E E     W AL+
Sbjct: 735 NHLEEAYQFVKGMEVEPTAEVWCALL 760



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 34/339 (10%)

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           NE ++    LF N    +  +DE    SVL  C +   +  G  VHA             
Sbjct: 57  NEAFQSLTDLFANQSPSQFSLDEAYS-SVLELCGSKKALSEGQQVHA------------- 102

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
                HM        T+  LF++     +     ++  Y KCG +  A  LFD M  K +
Sbjct: 103 -----HM-------ITSNALFNS-----VFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTI 145

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
            +W+ MI  Y  + +   +L L+ EM+  GI  D  T   ++ AC  L     G  +H  
Sbjct: 146 FTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGL 205

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGLADK 510
             K G      +  +++ MY K   ++ A ++F    EK  V SWN++I  ++ NG + +
Sbjct: 206 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE 265

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +F EM+K+ + PN  TFV  L AC     + +G    ++ + +     N      ++
Sbjct: 266 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-MFIHATVLKSSYYINVFVANALI 324

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +  R G + EA  +  +M    D  +W ++L    ++G
Sbjct: 325 AMYARFGKMGEAANIFYNMD-DWDTISWNSMLSGFVQNG 362


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/526 (42%), Positives = 339/526 (64%), Gaps = 5/526 (0%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALI 336
           AL LF +++      D        ++CA          +HA A K G +  +  ++  L+
Sbjct: 59  ALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLV 118

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA-RALFDAMIEKDVVSWS 395
           H Y+ CG +  A ++FD G + D+++WN ++ GY + G  E   R  F  M  +D VSW+
Sbjct: 119 HAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWN 178

Query: 396 TMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           T++S    + ++ E +++F EM      +PD  TLVSV+SA  +L AL  G W HAY+ +
Sbjct: 179 TVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFR 238

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLE 513
             +++   L + LI+MY K G ++ A+ VF     ++ + +WNA++ GF  NG ++++LE
Sbjct: 239 KCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALE 298

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F+ M+ + + PN+ITF  VL AC H GLV+EG ++F  M + + +EP+  HYGCMVDL 
Sbjct: 299 LFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLF 358

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
            RAGM ++AEE+I++MPM PD +   ALLGAC+ H + E+G++VG +L+E   +    +V
Sbjct: 359 CRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYV 418

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A  G W  V +VR +M+ RGV+K PG S +E NG+IHEF++GD++H +  +I  
Sbjct: 419 LLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYK 478

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           ML E+ ++LK  GY PDT +V  DID E+ KE++L  HSEKLAIAFGLI+ +P  PIR++
Sbjct: 479 MLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVV 538

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            NLRIC DCH A K IS+ + R I+VRD +RFHHF+ GSCSC D+W
Sbjct: 539 NNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 161/378 (42%), Gaps = 65/378 (17%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNN 170
           P  A+ L+  +L +    D   Y L   + A          +H H  K G   S   V  
Sbjct: 56  PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRC 115

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA 230
            L++ YAVCG L  AR++FD     D+V+WN +L GY      E+               
Sbjct: 116 RLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDED--------------- 160

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHR 289
              ++  F            F  MP +D VSW+ ++S    N  Y+EA+ +F  M+    
Sbjct: 161 ---LLRDF------------FARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQE 205

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              D V +VSV+SA A L  +  G   HA   +  IE    L +ALI+MYS CG I  A 
Sbjct: 206 CQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAV 265

Query: 350 KLFD-AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            +FD  G    L +WN+M++G+   G  E+A                             
Sbjct: 266 YVFDNVGGKRSLDTWNAMLAGFTANGYSERA----------------------------- 296

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTL 467
             L LF  M+   + P++ T  +V++AC+H   +++G K+     R  G++ +      +
Sbjct: 297 --LELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCM 354

Query: 468 IDMYMKLGCVDNALEVFH 485
           +D++ + G  + A E+  
Sbjct: 355 VDLFCRAGMFEKAEEIIQ 372



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 14/241 (5%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRL 145
            FA + S +   +NT++   +      +AI +++ ML +     D  T   +  A A   
Sbjct: 165 FFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLG 224

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSIL 204
           ++  G   H +V +   + +  +++ LINMY+ CG +  A  +FD       L +WN++L
Sbjct: 225 ALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAML 284

Query: 205 AGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK---- 256
           AG+      E A  ++ +M       N I  N+++      G V E  + F+ M +    
Sbjct: 285 AGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGI 344

Query: 257 -KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
             D+  +  ++  + +  M+E+A  +   M    +  D  ++ ++L AC     ++ G  
Sbjct: 345 EPDIAHYGCMVDLFCRAGMFEKAEEIIQTM---PMEPDASMLKALLGACRTHKNLELGKK 401

Query: 316 V 316
           V
Sbjct: 402 V 402


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/677 (35%), Positives = 382/677 (56%), Gaps = 61/677 (9%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           L++ YA CGDL   R++FD     ++  WN +++ Y    + +E+  ++  M E+ I   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S             A  LF ++  +D++SW+++IS Y  N + E  L ++  M+   + 
Sbjct: 62  RS-----------ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 110

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           VD   ++SVL  CA    +  G +VH+LA+K   E  IN  N L+ MYS CG++  A ++
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMI-----SG-- 400
           F+     +++SW SMI+GY + G  + A  L   M    ++ DVV+ ++++     SG  
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 230

Query: 401 ----------------------------YAQHDQFSETLSLFMEMQHHGI---------- 422
                                       YA+        S+F  M    I          
Sbjct: 231 DNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGEL 290

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +PD  T+  ++ AC  L AL++GK IH YI +NG   +  +   L+D+Y+K G +  A  
Sbjct: 291 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 350

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F     K + SW  +I G+ M+G  ++++  F+EM+ +G+ P+E++F+ +L AC H GL
Sbjct: 351 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 410

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           +++G R F  M  +  +EP  +HY CMVDLL R G L +A + IE++P++PD   WGALL
Sbjct: 411 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 470

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
             C+ + D E+ E+V  ++ EL+P++ G++VLL+NI+A   +W++V  +R  + ++G+ K
Sbjct: 471 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRK 530

Query: 663 IPGCSMIEANGIIHEFLAGDR-THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
            PGCS IE  G ++ F++G+  +HP   +I+++L +M +K+K EGY P T     + D+ 
Sbjct: 531 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 590

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           +KE  L  HSEKLA+AFGL+T+ P   IR+ KNLR+C DCH  AKF+S+   REIV+RD 
Sbjct: 591 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 650

Query: 782 HRFHHFKHGSCSCMDFW 798
           +RFHHFK G CSC  FW
Sbjct: 651 NRFHHFKDGYCSCRGFW 667



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 212/478 (44%), Gaps = 84/478 (17%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +E  N +++N M+  Y +    +++ICL+K+M+   +                  
Sbjct: 17  RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI------------------ 58

Query: 146 SVFEGKLIH--DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL----DLVS 199
              EGK       +     D DV   N++I+ Y   G       ++ +   L    DL +
Sbjct: 59  ---EGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLAT 115

Query: 200 WNSILAGYVNADNVEEAKFIYN----KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
             S+L G   +  +   K +++       ER I  SN+++ ++ + G++  A R+F++M 
Sbjct: 116 IISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG 175

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           ++++VSW+++I+ Y ++   + A++L   M    V +D V + S+L ACA    +  G  
Sbjct: 176 ERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD 235

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG------ 369
           VH       +   + + NAL+ MY+ CG +  A  +F      D+ISWN+M+        
Sbjct: 236 VHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSR 295

Query: 370 -------------------------------------------YLKCGSVEKARALFDAM 386
                                                      Y+KCG +  AR LFD +
Sbjct: 296 TMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMI 355

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             KD+VSW+ MI+GY  H   +E ++ F EM+  GI PDE + +S++ AC+H   L+QG 
Sbjct: 356 PSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG- 414

Query: 447 WIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
           W   YI KN   I   L     ++D+  + G +  A +           + W AL+ G
Sbjct: 415 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 194/430 (45%), Gaps = 41/430 (9%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI----EMSY 83
           ++L+ + + L  C   K  T  L + + +  I  +F   R I FS  LL       ++  
Sbjct: 111 VDLATIISVLVGCA--KSGTLSLGKAVHSLAIKSSF--ERRINFSNTLLDMYSKCGDLDG 166

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + ++F  +   N   + +M+  Y +      AI L + M    V +D      +  A A 
Sbjct: 167 ALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACAR 226

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS- 202
             S+  GK +HD++      S+++V N L++MYA CG +  A  +F    V D++SWN+ 
Sbjct: 227 SGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM 286

Query: 203 -------------ILAGYVNADNVEEAKFIYNKMPERNIIAS-----NSMIVLFGRKGNV 244
                        IL    +   +E  K I+  +  RN  +S     N+++ L+ + G +
Sbjct: 287 VGELKPDSRTMACILPACASLSALERGKEIHGYIL-RNGYSSDRHVANALVDLYVKCGVL 345

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             A  LF  +P KDLVSW+ +I+ Y  +    EA+  F  M D  +  DEV  +S+L AC
Sbjct: 346 GLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYAC 405

Query: 305 ANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           ++  +++ G    + +     IE  +     ++ + S  G ++ A K  +       I+ 
Sbjct: 406 SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP----IAP 461

Query: 364 NSMISGYLKCG-----SVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFM 415
           ++ I G L CG      +E A  + + + E   ++   +  + + YA+ +++ E   +  
Sbjct: 462 DATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMRE 521

Query: 416 EMQHHGIRPD 425
           ++   G+R +
Sbjct: 522 KIGKKGLRKN 531


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/757 (35%), Positives = 411/757 (54%), Gaps = 81/757 (10%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  ++  N   + T++  Y + ++  + + L+  M N     +++T+       A   
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG 208

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G  +H  V+K G D  + V+N+LIN+Y  CG++  AR LFD++ V  +V+WNS+++
Sbjct: 209 VGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 268

Query: 206 GYVN--------------------------------ADNVEEAKFI---------YNKMP 224
           GY                                    N++E +F          Y  + 
Sbjct: 269 GYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFM 283
           ++NI    +++V + +   + +A RLFKE+    ++VSW+A+IS + QN+  EEA+ LF 
Sbjct: 329 DQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFS 386

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V  +E     +L+A   L V+ + + VHA  VK                Y    
Sbjct: 387 EMKRKGVRPNEFTYSVILTA---LPVI-SPSEVHAQVVKTN--------------YERSS 428

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            + TA  L DA               Y+K G VE+A  +F  + +KD+V+WS M++GYAQ
Sbjct: 429 TVGTA--LLDA---------------YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 471

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSI 462
             +    + +F E+   GI+P+E T  S+++ C    A + QGK  H +  K+ L  +  
Sbjct: 472 TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLC 531

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + + L+ MY K G +++A EVF    EK + SWN++I G+A +G A K+L++F EMKK  
Sbjct: 532 VSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRK 591

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V  + +TF+GV  AC H GLV+EG ++F+ M+++ ++ P  +H  CMVDL  RAG L++A
Sbjct: 592 VKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKA 651

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            ++IE+MP       W  +L AC+ H   E+G     K++ ++P+    +VLLSN++A  
Sbjct: 652 MKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAES 711

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G W +  +VR +M  R V K PG S IE     + FLAGDR+HP  ++I   L++++ +L
Sbjct: 712 GDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRL 771

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY PDT  V  DID E KE  L +HSE+LAIAFGLI     +P+ I+KNLR+C DCH
Sbjct: 772 KDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCH 831

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKH-GSCSCMDFW 798
              K I++  +REIVVRD +RFHHF   G CSC DFW
Sbjct: 832 LVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 245/520 (47%), Gaps = 74/520 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H   +K GF  DV V  +L++ Y    +    RK+FDE    ++V+W ++++GY  
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 210 ADNVEEAKFIYNKMP---------------------------------------ERNIIA 230
               +E   ++ +M                                        ++ I  
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           SNS+I L+ + GNV +A  LF +   K +V+W+++IS Y  N +  EAL +F +M  + V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            + E    SV+  CANL  ++    +H   VK G     N++ AL+  YS C  +  A +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LF                   + G V             +VVSW+ MISG+ Q+D   E 
Sbjct: 352 LFK------------------EIGCV------------GNVVSWTAMISGFLQNDGKEEA 381

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + LF EM+  G+RP+E T   +++A   +   +    +HA + K   + +S +GT L+D 
Sbjct: 382 VDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDA 437

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y+KLG V+ A +VF G ++K + +W+A++ G+A  G  + +++MF E+ K G+ PNE TF
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
             +L  C          + F+    + RL+ +      ++ +  + G ++ AEE+ +   
Sbjct: 498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ- 556

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
              D+ +W +++    +HG       V +++ + +   DG
Sbjct: 557 REKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 177/393 (45%), Gaps = 38/393 (9%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF + P +D  S+ +L+  + ++   +EA  LF+N+    + +D  +  SVL   A L  
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +H   +K G    +++  +L+  Y          K+FD     ++++W ++I  
Sbjct: 109 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI-- 166

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                        SGYA++    E L+LFM MQ+ G +P+  T 
Sbjct: 167 -----------------------------SGYARNSMNDEVLTLFMRMQNEGTQPNSFTF 197

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            + +          +G  +H  + KNGL     +  +LI++Y+K G V  A  +F  TE 
Sbjct: 198 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 257

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           K V +WN++I G+A NGL  ++L MF  M+ + V  +E +F  V+  C ++  +    + 
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL-GACKKH 608
             S+++   L   +     MV       ML +A  L + +    +V +W A++ G  +  
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAML-DALRLFKEIGCVGNVVSWTAMISGFLQND 376

Query: 609 GDHE---MGERVGRKLVELQPDHDGFHVLLSNI 638
           G  E   +   + RK V  +P+   + V+L+ +
Sbjct: 377 GKEEAVDLFSEMKRKGV--RPNEFTYSVILTAL 407



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 2/241 (0%)

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           G +    +  A  LFD    +D  S+ +++ G+++  +  E   LF+ +   G+  D + 
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             SV+     L     G+ +H    K G   +  +GT+L+D YMK     +  +VF   +
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           E+ V +W  LI G+A N + D+ L +F  M+  G  PN  TF   LG     G+   G  
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG-L 214

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             ++++ ++ L+        +++L  + G +++A  L +   +   V TW +++     +
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAAN 273

Query: 609 G 609
           G
Sbjct: 274 G 274


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/715 (32%), Positives = 389/715 (54%), Gaps = 61/715 (8%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S ++F  +  P    + +++R Y    +P Q++  +  ML + +  D+  +P + ++ AL
Sbjct: 59  SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            + +  G+ +H ++++ G D D+Y  N L+NMY+         +  +ES    L      
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYS-------KLRFLEESGRQRL------ 165

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                       A  ++++M ER        ++      +     ++F+ MP+KDLVSW+
Sbjct: 166 -----------GAGEVFDEMTERTRSVRTVSVL------SEDSVRKIFEMMPEKDLVSWN 208

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +I+   +N +YEE L +   M    +  D   + SVL   A    +  G  +H  +++ 
Sbjct: 209 TIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ 268

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G++  I + ++LI MY+                               KC  V  +  +F
Sbjct: 269 GLDADIYVASSLIDMYA-------------------------------KCTRVADSCRVF 297

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
             + E+D +SW+++I+G  Q+  F E L  F +M    I+P   +  S++ AC HL  L 
Sbjct: 298 TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            GK +H YI +NG   N  + ++L+DMY K G +  A ++F     + + SW A+I+G A
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCA 417

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           ++G A  ++E+F +M+  G+ PN + F+ VL AC H GLVDE  ++FNSM ++  + P  
Sbjct: 418 LHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGV 477

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HY  + DLLGRAG L+EA + I  M + P  + W  LL AC+ H + +M E+V  +++E
Sbjct: 478 EHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE 537

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           + P++ G ++LL+NI+++  RW +  + R  M R G+ K P CS IE    ++ F+AGD 
Sbjct: 538 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDE 597

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP   +I   ++ + + ++ EGY PDT EV  D+++E+K+  +  HSE+LAI FG+I  
Sbjct: 598 SHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINT 657

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                IR+ KNLR+C DCHTA KFIS+   REIVVRD  RFHHFK+G+CSC D+W
Sbjct: 658 PAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 204/396 (51%), Gaps = 9/396 (2%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           ++ RLF  +     ++W ++I CY  + +  ++L  F+ M+   +  D  V  SVL +CA
Sbjct: 58  DSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT-TAEKLFDAGHNLDLISWN 364
            L  +  G S+H   +++G++  +   NAL++MYS    +  +  +   AG   D ++  
Sbjct: 118 LLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTER 177

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +     +   S +  R +F+ M EKD+VSW+T+I+G A++  + ETL +  EM    ++P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  TL SV+      V + +GK IH    + GL  +  + ++LIDMY K   V ++  VF
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               E+   SWN++I G   NGL D+ L  F +M  + + P   +F  ++ AC H+  + 
Sbjct: 298 TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G +  +  I  +  + N      +VD+  + G ++ A+++ + M +  D+ +W A++  
Sbjct: 358 LG-KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMG 415

Query: 605 CKKHGDH----EMGERVGRKLVELQPDHDGFHVLLS 636
           C  HG      E+ E++  +   ++P+H  F  +L+
Sbjct: 416 CALHGQAPDAIELFEQM--ETEGIKPNHVAFMAVLT 449



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           I  GL AD + AS LI           ++ S ++F  L   +G  +N+++   +Q  +  
Sbjct: 266 IRQGLDADIYVASSLIDMYAKC---TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD 322

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           + +  ++ ML   +   +Y++  +  A A   ++  GK +H ++ + GFD ++++ ++L+
Sbjct: 323 EGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 382

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----I 229
           +MYA CG++  A+++FD   + D+VSW +++ G        +A  ++ +M    I    +
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHV 442

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPK 256
           A  +++      G V EA + F  M +
Sbjct: 443 AFMAVLTACSHGGLVDEAWKYFNSMTR 469


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/735 (33%), Positives = 392/735 (53%), Gaps = 82/735 (11%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TY  + Q  A   S+ +G+ IH  +     + D  + + L+ MY  CGDL   R++FD+ 
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
               +  WN ++ GY    N  E+  ++ +M E  I           R+  V  A +LF 
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGI-----------RR--VESARKLFD 209

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           E+  +D++SW+++IS Y  N + E+ L LF  M+   +  D   +VSV++ C+N  ++  
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLL 269

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G ++H  A+K      + L N L+ MYS  G + +A ++F+      ++SW SMI+GY +
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 373 CGSVEKARALFDAM----IEKDVVSWSTMISG---------------------------- 400
            G  + +  LF  M    I  D+ + +T++                              
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFV 389

Query: 401 -------YAQHDQFSETLSLFMEMQ------------------------------HHGIR 423
                  YA+     +  S+F EMQ                               +  +
Sbjct: 390 SNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK 449

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+  T+  ++ AC  L AL++G+ IH +I +NG  ++  +   L+DMY+K G +  A  +
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F    EK + SW  +I G+ M+G   +++  F+EM+ SG+ P+E++F+ +L AC H GL+
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           DEG   FN M     +EP S+HY C+VDLL RAG L +A + I+ MP+ PD   WGALL 
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
            C+ + D ++ E+V   + EL+P++ G++VLL+NI+A   +W++V ++R  + RRG+ K 
Sbjct: 630 GCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 689

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PGCS IE  G +H F+ GD +HP  N+I+ +L +   ++K EG+ P         D  EK
Sbjct: 690 PGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEK 749

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSEK+A+AFG++++ P   +R+ KNLR+C DCH  AKF+S+   R+I++RD +R
Sbjct: 750 EMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNR 809

Query: 784 FHHFKHGSCSCMDFW 798
           FHHFK GSCSC   W
Sbjct: 810 FHHFKDGSCSCRGHW 824



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 208/457 (45%), Gaps = 73/457 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L   +   +N+M+  Y+   + ++ + L++ ML   +  D  T   +    +   
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +H + +KA F  ++ +NN L++MY+  G+L++A ++F+      +VSW S++A
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325

Query: 206 GYVN-----------------------------------ADNVEEAKFIYNKMPER---- 226
           GY                                        +E  K ++N + E     
Sbjct: 326 GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQS 385

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  SN+++ ++ + G++ +A  +F EM  KD+VSW+ +I  Y +N +  EAL LF+ M 
Sbjct: 386 DLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM- 444

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            +    + + +  +L ACA+L  ++ G  +H   ++ G     ++ NAL+ MY  CG + 
Sbjct: 445 QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 504

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A  LFD     DL+SW  MI+GY                                 H  
Sbjct: 505 LARLLFDMIPEKDLVSWTVMIAGY-------------------------------GMHGY 533

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGT 465
            SE ++ F EM++ GI PDE + +S++ AC+H   LD+G      +R N  ++  S    
Sbjct: 534 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA 593

Query: 466 TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIG 501
            ++D+  + G +  A +       E   + W AL+ G
Sbjct: 594 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 173/394 (43%), Gaps = 55/394 (13%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           ++ + ++F  +   +   + +M+  Y +  +   ++ L+  M    +  D +T   +  A
Sbjct: 302 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHA 361

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A    +  GK +H+++ +    SD++V+N L++MYA CG +  A  +F E  V D+VSW
Sbjct: 362 CACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSW 421

Query: 201 NSILAGYVNADNVEEA-----KFIYNKMPERNIIA------------------------- 230
           N+++ GY       EA     +  YN  P    +A                         
Sbjct: 422 NTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRN 481

Query: 231 --------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                   +N+++ ++ + G +  A  LF  +P+KDLVSW+ +I+ Y  +    EA+  F
Sbjct: 482 GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAF 541

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSS 341
             M +  +  DEV  +S+L AC++  ++  G    + +     IE        ++ + + 
Sbjct: 542 NEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLAR 601

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS--------VEK-ARALFDAMIEKDVV 392
            G ++ A K       +  I  ++ I G L CG          EK A  +F+  +E +  
Sbjct: 602 AGNLSKAYKFI----KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFE--LEPENT 655

Query: 393 SWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPD 425
            +  +++  YA+ +++ E   L   +   G+R +
Sbjct: 656 GYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 689



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 109/254 (42%), Gaps = 53/254 (20%)

Query: 415 MEMQHHGIRPDEA--TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           ME+ +   +PD    T  SV+  C  L ++  G+ IH+ I+ N ++++ +LG+ L+ MY+
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV 147

Query: 473 -------------------------------KLGCVDNALEVFHGTEEKGVS-------- 493
                                          K+G    +L +F    E G+         
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL 207

Query: 494 ----------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
                     SWN++I G+  NGL++K L++F +M   G+  +  T V V+  C + G++
Sbjct: 208 FDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGML 267

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
             G R  +    +           C++D+  ++G L  A ++ E+M     V +W +++ 
Sbjct: 268 LLG-RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIA 325

Query: 604 ACKKHGDHEMGERV 617
              + G  +M  R+
Sbjct: 326 GYAREGLSDMSVRL 339


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/756 (33%), Positives = 402/756 (53%), Gaps = 74/756 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + +P   ++N  +   +Q    Q+ + L++ M  + +  +  T   + QA     
Sbjct: 189 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 248

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++   K IH +V + G DSDV + N LI+MY+  G L  AR++FD               
Sbjct: 249 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS-------------- 294

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----KKDLVS 261
                            M  RN  + NSMI  +   G + +A  LF E+     K D+V+
Sbjct: 295 -----------------MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVT 337

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+ L+S +  +   EE L +   M       +   + SVL A + L  +  G   H   +
Sbjct: 338 WNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVL 397

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           + G +C + +  +LI MY     +T+A+ +FD   N ++ +WNS++SGY   G  E A  
Sbjct: 398 RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALR 457

Query: 382 LFDAM----IEKDVVSWSTMISGYA----------------------------------- 402
           L + M    I+ D+V+W+ MISGYA                                   
Sbjct: 458 LLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSS 517

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q     ++L  F +MQ  G+ P+ A++  ++ AC  L  L +GK IH    +NG   +  
Sbjct: 518 QAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 577

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + T LIDMY K   + NA +VF   + K ++SWN +I+GFA+ GL  +++ +F+EM+K G
Sbjct: 578 VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 637

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V P+ ITF  +L AC++ GL+ EG ++F+SMI ++R+ P  +HY CMVDLLGRAG L EA
Sbjct: 638 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 697

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            +LI +MP+ PD   WGALLG+C+ H + +  E   + L +L+P++   ++L+ N+++  
Sbjct: 698 WDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIF 757

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            RW+D+  +R +M   GV      S I+ N  +H F + ++ HP   +I   L ++  ++
Sbjct: 758 NRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 817

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY PD   V  ++D+ EK+  L  H+EKLAI +GLI +    PIR++KN RIC+DCH
Sbjct: 818 KKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCH 877

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +AAK+IS    RE+ +RD  RFHHF+ G CSC DFW
Sbjct: 878 SAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 200/380 (52%), Gaps = 8/380 (2%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++  +GR   + +A ++F EMP  + + W+  I    Q+E  ++ + LF  M    +  
Sbjct: 173 ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKA 232

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +   +V VL AC  +  + A   +H    + G++  ++L N LI MYS  G++  A ++F
Sbjct: 233 ETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVF 292

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFS 408
           D+  N +  SWNSMIS Y   G +  A +LF  +    ++ D+V+W+ ++SG+  H    
Sbjct: 293 DSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 352

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E L++   MQ  G +P+ +++ SV+ A + L  L+ GK  H Y+ +NG   +  +GT+LI
Sbjct: 353 EVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLI 412

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY+K   + +A  VF   + + + +WN+L+ G++  G+ + +L + ++M+K G+ P+ +
Sbjct: 413 DMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLV 472

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+ G++      G   E     +   +   L PN   +  ++    +AG  +++ +    
Sbjct: 473 TWNGMISGYAMWGCGKEALAVLHQ-TKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQ 531

Query: 589 MPMS---PDVATWGALLGAC 605
           M      P+ A+   LL AC
Sbjct: 532 MQQEGVMPNSASITCLLRAC 551



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 199/430 (46%), Gaps = 45/430 (10%)

Query: 84  SFKIFAFLES----PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++ +F  LES    P+   +N ++  +      ++ + + + M       ++ +   + Q
Sbjct: 319 AWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQ 378

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +    +  GK  H +VL+ GFD DVYV  +LI+MY     L++A+ +FD     ++ +
Sbjct: 379 AISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFA 438

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP 255
           WNS+++GY      E+A  + N+M +  I    +  N MI  +   G   EA  +  +  
Sbjct: 439 WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTK 498

Query: 256 K----KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
                 ++VSW+ALIS   Q     ++L  F  M    VM +   +  +L ACA+L++++
Sbjct: 499 SLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQ 558

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H L+++ G    + +  ALI MYS    +  A K+F    N  L SWN MI G+ 
Sbjct: 559 KGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGF- 617

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                    A+F                G  +     E +S+F EMQ  G+ PD  T  +
Sbjct: 618 ---------AIF----------------GLGK-----EAISVFNEMQKVGVGPDAITFTA 647

Query: 432 VISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           ++SAC +   + +G K+  + I    +         ++D+  + G +D A ++ H    K
Sbjct: 648 LLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLK 707

Query: 491 GVSS-WNALI 499
             ++ W AL+
Sbjct: 708 PDATIWGALL 717



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 157/366 (42%), Gaps = 35/366 (9%)

Query: 222 KMPER--NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE-MYEEA 278
           K+P++     A+ ++I  +   G+   A  +F     ++ + W++ +  ++ +       
Sbjct: 58  KLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIV 117

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L +F  +    V+ D  V    L  C  +  +  G  +H   +K G +  + L+ AL++ 
Sbjct: 118 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 177

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y                                +C  +EKA  +F  M   + + W+  I
Sbjct: 178 YG-------------------------------RCWGLEKANQVFHEMPNPEALLWNEAI 206

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
               Q ++  + + LF +MQ   ++ + AT+V V+ AC  + AL+  K IH Y+ + GL 
Sbjct: 207 ILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLD 266

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  L   LI MY K G ++ A  VF   E +  SSWN++I  +A  G  + +  +F E+
Sbjct: 267 SDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL 326

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           + S + P+ +T+  +L      G  +E       M Q    +PNS     ++  +   G 
Sbjct: 327 ESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRM-QGEGFKPNSSSMTSVLQAISELGF 385

Query: 579 LKEAEE 584
           L   +E
Sbjct: 386 LNMGKE 391



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 44/287 (15%)

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY-AQHDQFSETLSLFMEMQHHGIR 423
           ++IS YL  G    A  +F   + ++ + W++ +  + +        L +F E+   G+ 
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
            D       +  CT ++ +  G  IH  + K G  ++  L   L++ Y +   ++ A +V
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           FH         WN  II    +    K +E+F +M+ S +     T V VL AC  MG +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 544 DE-----------------------------------GHRHFNSMIQEHRLEPNSKHYGC 568
           +                                      R F+SM  E+R   N+  +  
Sbjct: 251 NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM--ENR---NTSSWNS 305

Query: 569 MVDLLGRAGMLKEAEEL---IESMPMSPDVATWGALLGACKKHGDHE 612
           M+      G L +A  L   +ES  M PD+ TW  LL     HG  E
Sbjct: 306 MISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 352


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/690 (38%), Positives = 377/690 (54%), Gaps = 76/690 (11%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G  +H  V+K GF+  + V N+LI++Y+  G L  AR +FD+  + D V+WNS++AGYV 
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 210 ADNVEEAKFIYNKM------PERNIIAS-------------------------------- 231
                E   I+NKM      P     AS                                
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 232 -NSMIVLFGRKGNVAEACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             +++V   +   + +A  LF  M + K++VSW+A+IS   QN   ++A+ LF  M    
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  +     ++L+    + V    + +HA  +K                Y     + TA 
Sbjct: 393 VKPNHFTYSAILTVHYPVFV----SEMHAEVIKTN--------------YERSSSVGTA- 433

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            L DA               Y+K G+   A  +F+ +  KD+++WS M++GYAQ  +  E
Sbjct: 434 -LLDA---------------YVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEE 477

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISAC-THLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
              LF ++   GI+P+E T  SVI+AC +   A +QGK  HAY  K  L     + + L+
Sbjct: 478 AAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALV 537

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY K G +D+A EVF   +E+ + SWN++I G++ +G A K+LE+F EM+K  +  + +
Sbjct: 538 TMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAV 597

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+GV+ AC H GLV++G ++FNSMI +H + P  KHY CM+DL  RAGML++A  +I  
Sbjct: 598 TFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINE 657

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP  P    W  LLGA + H + E+GE    KL+ LQP+    +VLLSN++A+ G W + 
Sbjct: 658 MPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQER 717

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR +M +R V K PG S IE     + FLAGD THP  N+I + L E++ +LK  GY 
Sbjct: 718 TNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQ 777

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT  V  DI+ E+KET L  HSE+LAIAFGLI   P  PI+I+KNLR+C DCH   K +
Sbjct: 778 PDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLV 837

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S    R IVVRD +RFHHFK G CSC D+W
Sbjct: 838 SLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/552 (23%), Positives = 249/552 (45%), Gaps = 80/552 (14%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N ++ +Y +    ++A+ L+  +L++++  D  T   +    A  L    G+ +H   +K
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD-------- 211
            G    V V  +L++MY    +++  R++FDE    ++VSW S+LAGY            
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 212 --NVEEAKFIYNKMPERNIIAS-----------------------------NSMIVLFGR 240
              ++    + N+     +IA+                             NS+I L+ R
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSR 241

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G + +A  +F +M  +D V+W+++I+ Y +N    E   +F  M    V    +   SV
Sbjct: 242 LGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASV 301

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF---DAGHN 357
           + +CA+L  +     +   A+K G      +  AL+   S C E+  A  LF   + G N
Sbjct: 302 IKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKN 361

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             ++SW +MISG L+ G  ++A                               ++LF +M
Sbjct: 362 --VVSWTAMISGCLQNGGNDQA-------------------------------VNLFSQM 388

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G++P+  T  ++++    +   +    +HA + K   + +S +GT L+D Y+KLG  
Sbjct: 389 RREGVKPNHFTYSAILTVHYPVFVSE----MHAEVIKTNYERSSSVGTALLDAYVKLGNT 444

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            +A++VF   E K + +W+A++ G+A  G  +++ ++F ++ K G+ PNE TF  V+ AC
Sbjct: 445 IDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINAC 504

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
                  E  + F++   + RL         +V +  + G +  A E+ +      D+ +
Sbjct: 505 ASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVS 563

Query: 598 WGALLGACKKHG 609
           W +++    +HG
Sbjct: 564 WNSMISGYSQHG 575



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 195/402 (48%), Gaps = 40/402 (9%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           S++ ++ +  NV +  R+F EM ++++VSW++L++ Y  N +Y     LF  M    V+ 
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +   V +V++A  N  VV  G  VHA+ VK G E  I + N+LI +YS  G +  A  +F
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVF 252

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     D ++WNSMI+GY++ G                               Q  E   
Sbjct: 253 DKMEIRDWVTWNSMIAGYVRNG-------------------------------QDLEVFE 281

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +F +MQ  G++P   T  SVI +C  L  L   K +     K+G   + I+ T L+    
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 473 KLGCVDNALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           K   +D+AL +F   EE K V SW A+I G   NG  D+++ +FS+M++ GV PN  T+ 
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS 401

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L    +   V E H    + + +   E +S     ++D   + G   +A ++ E +  
Sbjct: 402 AIL-TVHYPVFVSEMH----AEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIE- 455

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGF 631
           + D+  W A+L    + G+ E   ++  +L++  ++P+   F
Sbjct: 456 AKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTF 497



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 205/454 (45%), Gaps = 74/454 (16%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +E  +   +N+M+  Y++     +   ++  M    V   + T+  + ++ A    
Sbjct: 251 VFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF---DESPVLDLVSWNSI 203
           +   KL+    LK+GF +D  V   L+   + C ++  A  LF   +E    ++VSW ++
Sbjct: 311 LALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGK--NVVSWTAM 368

Query: 204 LAGYVNADNVEEAKFIYNKMP-----------------------------------ERNI 228
           ++G +     ++A  ++++M                                    ER+ 
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSS 428

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
               +++  + + GN  +A ++F+ +  KDL++WSA+++ Y Q    EEA  LF  +I  
Sbjct: 429 SVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKE 488

Query: 289 RVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            +  +E    SV++ACA+ T   + G   HA A+K+ +   + + +AL+ MY+  G I +
Sbjct: 489 GIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDS 548

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++F      DL+SWNSMISGY + G  +KA  +FD                       
Sbjct: 549 AHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFD----------------------- 585

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTT 466
                   EMQ   +  D  T + VI+ACTH   +++G K+ ++ I  + +       + 
Sbjct: 586 --------EMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSC 637

Query: 467 LIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +ID+Y + G ++ A+ + +      G + W  L+
Sbjct: 638 MIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL 671



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 187/397 (47%), Gaps = 42/397 (10%)

Query: 247 ACRLFKEMPKK--DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           A  LF ++P +   L   + L+  Y +++  +EAL LF++++   +  DE  +  V + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A     K G  VH   VK G+  ++++  +L+ MY     +    ++FD     +++SW 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           S+++GY                      SW+ +  GY           LF +MQ+ G+ P
Sbjct: 164 SLLAGY----------------------SWNGLY-GY--------VWELFCQMQYEGVLP 192

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +  T+ +VI+A  +   +  G  +HA + K+G +    +  +LI +Y +LG + +A +VF
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVF 252

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC---RHMG 541
              E +   +WN++I G+  NG   +  E+F++M+ +GV P  +TF  V+ +C   R + 
Sbjct: 253 DKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELA 312

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           LV    +       +     +      ++  L +   + +A  L   M    +V +W A+
Sbjct: 313 LV----KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 602 LGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
           +  C ++G ++    +  ++    ++P+H  +  +L+
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 45/275 (16%)

Query: 80  EMSYSFKIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
           EM  +  +F+ +E     + +  M+   +Q     QA+ L+  M    V  +++TY  + 
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
               +   VF  ++ H  V+K  ++    V   L++ Y   G+   A K+F+     DL+
Sbjct: 405 ---TVHYPVFVSEM-HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLM 460

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNI------------------------------ 228
           +W+++LAGY      EEA  +++++ +  I                              
Sbjct: 461 AWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAY 520

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                       S++++ ++ ++GN+  A  +FK   ++DLVSW+++IS Y Q+   ++A
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA 580

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           L +F  M    + VD V  + V++AC +  +V+ G
Sbjct: 581 LEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKG 615



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 104/212 (49%), Gaps = 10/212 (4%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + K+F  +E+ +   ++ M+  Y Q    ++A  L+  ++   +  + +T+  +  A A 
Sbjct: 447 AVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACAS 506

Query: 144 RLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
             +  E GK  H + +K   ++ + V++ L+ MYA  G++ +A ++F      DLVSWNS
Sbjct: 507 PTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNS 566

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           +++GY      ++A  ++++M +RN+    +    +I      G V +  + F  M    
Sbjct: 567 MISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDH 626

Query: 259 LVS-----WSALISCYEQNEMYEEALVLFMNM 285
            ++     +S +I  Y +  M E+A+ +   M
Sbjct: 627 HINPTMKHYSCMIDLYSRAGMLEKAMGIINEM 658


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/485 (45%), Positives = 310/485 (63%), Gaps = 1/485 (0%)

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            S H  AV+ G     ++Q+ ++ MY++ G++ ++   F      D++   +M++     
Sbjct: 134 VSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAG 193

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G V+ AR LFD M ++D V+WS MI+GY    +  E L LF EM   G    EATLVSV+
Sbjct: 194 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 253

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           +AC  +  LD+GKW+H Y+R  G++++  LGT L+DMY K G V  A+EVF    E+ V 
Sbjct: 254 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 313

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           +W + + G AMNG+  + L++F  M+ +G+ PN ++FV VL  C   GLVDEG   F+SM
Sbjct: 314 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 373

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
             ++ ++P  +HYGCMVDL GRAG L +A   I  MPM P    WGALL A + H   ++
Sbjct: 374 -DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDL 432

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G+    KL+ ++ ++D  HV LSNI+A    W  V  VRGMM  +GV K+PG S IE +G
Sbjct: 433 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 492

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +HEF  G R HP+ NEI+ ML EM ++L+L+GY  +T EV FDI++EEKE  +  HSEK
Sbjct: 493 KVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEK 552

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+AFGLI +     IRI+KNLR+C DCH   K +S+ F+REIV+RDR+RFHHFK G CS
Sbjct: 553 LALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECS 612

Query: 794 CMDFW 798
           C D+W
Sbjct: 613 CRDYW 617



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 63/347 (18%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H   ++ G  +D +V + +++MYA  GD++++R  F E    D                 
Sbjct: 137 HGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPD----------------- 179

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                         ++   +M+      G+V  A  LF  MP++D V+WSA+I+ Y    
Sbjct: 180 --------------VVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVG 225

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
              EAL+LF  M+     V E  +VSVL+ACA +  +  G  VH      G++  I L  
Sbjct: 226 RSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGT 285

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MYS CG + TA ++F++                               M E++V +
Sbjct: 286 ALVDMYSKCGAVVTAMEVFES-------------------------------MAERNVYT 314

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W++ +SG A +   +E L LF  M+  GI+P+  + V+V+  C+    +D+G+     + 
Sbjct: 315 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD 374

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           K G+         ++D+Y + G +D+A+   +    E     W AL+
Sbjct: 375 KYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALL 421



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 4/186 (2%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   ++ M+  Y+     ++A+ L+  ML+    V   T   +  A A   +
Sbjct: 202 LFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGT 261

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H +V   G    + +   L++MY+ CG +  A ++F+     ++ +W S ++G
Sbjct: 262 LDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSG 321

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR----KGNVAEACRLFKEMPKKDLVSW 262
                   E   ++ +M    I  +    V   R     G V E    F  M K  +  W
Sbjct: 322 LAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPW 381

Query: 263 SALISC 268
                C
Sbjct: 382 PEHYGC 387


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 345/550 (62%), Gaps = 4/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           L +  P    V +++ I  +    ++  AL L   M+   ++     + S L AC  L +
Sbjct: 89  LLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLAL 148

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G ++HA A K+ +     +  AL+ MY+  G+   A  LFD   +  ++   +M++ 
Sbjct: 149 ---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTC 205

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G+++ AR LFD M  KD + W+ MI GY QH + +E L LF  M   G+ PDE  +
Sbjct: 206 YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAI 265

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           +  +SA   L   + G+W+H+Y++ +  +++N+ +GT LIDMY K G +++A+ VF+   
Sbjct: 266 ILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG 325

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +K +  WNA+I G+AM+G + K+LEMFS+++  G+ P +ITF+G+L AC H GLVDEGH+
Sbjct: 326 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQ 385

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            F SM +E+ + P  +HYGCMVDLLGRAG+++EA  L++SM ++PD   W +LL AC+ H
Sbjct: 386 FFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 445

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            +  +G+++   LV     + G ++LLSNI+A+ G W++V  VR MM   G+ K PGCS 
Sbjct: 446 KNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSA 505

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE    ++EF+AGD +HP+ +EI  ML++M   +K +G+ P T  V  D+D+  KE  L 
Sbjct: 506 IEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALA 565

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AFGLI+ +P   I+I+KNLR C DCH   K IS+   R+IV RDR+RFHHF 
Sbjct: 566 VHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFV 625

Query: 789 HGSCSCMDFW 798
            GSC+C D+W
Sbjct: 626 DGSCTCGDYW 635



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + S +   +N M+  Y Q   P +A+ L++ ML + V  D     L   A A   
Sbjct: 217 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 276

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           +   G+ +H +V  +     +  V   LI+MY  CG L  A  +F+     D+V WN+++
Sbjct: 277 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 336

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKK--- 257
            GY    +  +A  +++++  + +  ++     ++      G V E  + F+ M ++   
Sbjct: 337 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 396

Query: 258 --DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
              +  +  ++    +  + EEA  L  +M    +  D V+ VS+L+AC
Sbjct: 397 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 442


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 345/550 (62%), Gaps = 4/550 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           L +  P    V +++ I  +    ++  AL L   M+   ++     + S L AC  L +
Sbjct: 88  LLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLAL 147

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G ++HA A K+ +     +  AL+ MY+  G+   A  LFD   +  ++   +M++ 
Sbjct: 148 ---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTC 204

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G+++ AR LFD M  KD + W+ MI GY QH + +E L LF  M   G+ PDE  +
Sbjct: 205 YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAI 264

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           +  +SA   L   + G+W+H+Y++ +  +++N+ +GT LIDMY K G +++A+ VF+   
Sbjct: 265 ILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG 324

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +K +  WNA+I G+AM+G + K+LEMFS+++  G+ P +ITF+G+L AC H GLVDEGH+
Sbjct: 325 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQ 384

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            F SM +E+ + P  +HYGCMVDLLGRAG+++EA  L++SM ++PD   W +LL AC+ H
Sbjct: 385 FFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 444

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            +  +G+++   LV     + G ++LLSNI+A+ G W++V  VR MM   G+ K PGCS 
Sbjct: 445 KNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSA 504

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE    ++EF+AGD +HP+ +EI  ML++M   +K +G+ P T  V  D+D+  KE  L 
Sbjct: 505 IEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALA 564

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AFGLI+ +P   I+I+KNLR C DCH   K IS+   R+IV RDR+RFHHF 
Sbjct: 565 VHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFV 624

Query: 789 HGSCSCMDFW 798
            GSC+C D+W
Sbjct: 625 DGSCTCGDYW 634



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + S +   +N M+  Y Q   P +A+ L++ ML + V  D     L   A A   
Sbjct: 216 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 275

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           +   G+ +H +V  +     +  V   LI+MY  CG L  A  +F+     D+V WN+++
Sbjct: 276 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 335

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKK--- 257
            GY    +  +A  +++++  + +  ++     ++      G V E  + F+ M ++   
Sbjct: 336 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 395

Query: 258 --DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
              +  +  ++    +  + EEA  L  +M    +  D V+ VS+L+AC
Sbjct: 396 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 441


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/513 (44%), Positives = 322/513 (62%), Gaps = 4/513 (0%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           ++ D   +  VL +CA+L+ V  G  VH   +++G+E    +  +LI MY  CG I  A 
Sbjct: 103 LLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDAR 162

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           KLFD     D+ SWN++I+GY+K G +  A  LF+ M  +++VSW+ MISGY Q+    +
Sbjct: 163 KLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQ 222

Query: 410 TLSLFMEMQHHG--IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            L LF EM   G  ++P+  T+VSV+ AC    AL++G+ IH +    GL +NS + T L
Sbjct: 223 ALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTAL 282

Query: 468 IDMYMKLGCVDNALEVFHGTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
             MY K   +  A   F    + G  + +WN +I  +A +G   +++ +F  M ++GV P
Sbjct: 283 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 342

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +TF+G+L  C H GL+D G  HFN M   H +EP  +HY C+VDLLGRAG L EA+EL
Sbjct: 343 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 402

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I  MPM    + WGALL AC+ H + E+ E   R+L  L+PD+ G +VLLSN++A  G W
Sbjct: 403 ISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMW 462

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           ++V ++R ++  +G+ K PGCS IE NG  H F+  D++HPQ  EI   L+ + +K+K+ 
Sbjct: 463 EEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMA 522

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  V  DI +EEKE  L  HSEKLAIAFGL+   P   +R+ KNLRIC DCH A 
Sbjct: 523 GYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAAT 582

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KFIS+ ++REI+VRD +RFH FK GSCSC D+W
Sbjct: 583 KFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 148/320 (46%), Gaps = 66/320 (20%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           DN+T P + ++ A    V  G+ +H   L+ G + D YV  +LI+MY  CG +  ARKLF
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           D                               KM  R++ + N++I  + ++G +  A  
Sbjct: 166 D-------------------------------KMIVRDMASWNALIAGYMKEGEIGVAED 194

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSACANL 307
           LF+ M  +++VSW+A+IS Y QN   E+AL LF  M+     +  + V +VSVL ACA  
Sbjct: 195 LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQS 254

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNS 365
             ++ G  +H  A  IG+    ++Q AL  MY+ C  +  A   FD  A +  +LI+WN+
Sbjct: 255 AALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNT 314

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           MI+ Y                               A H    E +S+F  M   G++PD
Sbjct: 315 MITAY-------------------------------ASHGCGVEAVSIFENMLRAGVQPD 343

Query: 426 EATLVSVISACTHLVALDQG 445
             T + ++S C+H   +D G
Sbjct: 344 AVTFMGLLSGCSHSGLIDAG 363



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 68/267 (25%)

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L  +  M   G+  D  TL  V+ +C  L  +  G+ +H    + GL+ +  +G +LIDM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALII------------------------------ 500
           Y+K G + +A ++F     + ++SWNALI                               
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 501 -GFAMNGLADKSLEMFSEMKKSG--VTPNEITFVGVLGACRHMGLVDEGHR--------- 548
            G+  NG A+++L +F EM + G  + PN +T V VL AC     ++ G R         
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 549 -HFNSMIQEHRLEPNSKHYG-----CMVDLLGRAG--------MLK---------EAEEL 585
            H NS +Q       +K Y      C  D++ + G        M+          EA  +
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 586 IESM---PMSPDVATWGALLGACKKHG 609
            E+M    + PD  T+  LL  C   G
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSG 358



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVD-NYT----- 133
           E+  +  +F  +E  N   +  M+  Y Q    +QA+ L+  ML +   +  N+      
Sbjct: 188 EIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSV 247

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--E 191
            P  AQ++AL      G+ IHD     G   +  V   L  MYA C  L  AR  FD   
Sbjct: 248 LPACAQSAALE----RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIA 303

Query: 192 SPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
               +L++WN+++  Y +     EA  I+  M
Sbjct: 304 QNGKNLIAWNTMITAYASHGCGVEAVSIFENM 335


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 351/552 (63%), Gaps = 1/552 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F+     ++  ++ALI  +  +  Y EA+ L+  M+   ++ D  ++ S+L AC +
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 159

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              ++ G  VH+ A+K+G      ++  ++ +Y  CGE+  A ++F+     D+++   M
Sbjct: 160 QLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVM 218

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           IS Y   G VE+A A+F  +  KD V W+ MI G+ ++++ +  L  F  MQ   +RP+E
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNE 278

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+V V+SAC+ L AL+ G+W+H+Y+RK  +++N  +G  LI+MY + G +D A  VF  
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            +++ V ++N +I G +MNG + +++E+F  M    + P  +TFVGVL AC H GLVD G
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
              F+SM +++R+EP  +HYGCMVDLLGR G L+EA +LI +M M+PD    G LL ACK
Sbjct: 399 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+GE+V ++L +      G +VLLS+++AS G+W +  +VR  M   G+ K PGC
Sbjct: 459 MHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGC 518

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE N  IHEFL GD  HPQ   I   L+E+ + L+LEGY P+   V  DI+  EKE  
Sbjct: 519 SSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWA 578

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSE+LAI +GLI+  P   IR+MKNLR+C DCH+A K I++   R+IVVRDR+RFH+
Sbjct: 579 LAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHY 638

Query: 787 FKHGSCSCMDFW 798
           F++G+CSC D+W
Sbjct: 639 FENGACSCGDYW 650



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 161/674 (23%), Positives = 280/674 (41%), Gaps = 133/674 (19%)

Query: 19  NAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           N+ P    +++   + + LQ+ +   Q   I +Q+I  G   D F    L++  +     
Sbjct: 38  NSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHA- 96

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
             + Y+ +IF +  +PN +++  ++  ++      +AI LY  ML+ ++  DNY    + 
Sbjct: 97  --IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 154

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +A   +L++ EG+ +H   LK GF S+  V   ++ +Y  CG+L  AR++F+E       
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE------- 207

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                   MPE +++AS  MI  +  +G V EA  +F  + +KD
Sbjct: 208 ------------------------MPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V W+A+I  + +NE    AL  F  M    V  +E  +V VLSAC+ L  ++ G  VH+
Sbjct: 243 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 302

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
              K  IE  + + NALI+MYS CG I  A+ +FD   + D+I++N+MISG    G   +
Sbjct: 303 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 362

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A  LF  M+ +                                +RP   T V V++AC+H
Sbjct: 363 AIELFRVMVGRR-------------------------------LRPTNVTFVGVLNACSH 391

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-----EKGVS 493
                                               G VD   E+FH        E  + 
Sbjct: 392 -----------------------------------GGLVDFGFEIFHSMARDYRVEPQIE 416

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            +  ++      G  +++ ++   MK   +TP+ I    +L AC+    ++ G +    +
Sbjct: 417 HYGCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKEL 473

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA------------L 601
             E R + +S  Y  +  +   +G  KEA ++   M  +      G             L
Sbjct: 474 --EDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 531

Query: 602 LGACKKHGDHEMGERVGRK--LVELQPDHDGFH----VLLSNIHASKGRWDDVLEVRGMM 655
           LG  +    H   ER+  K   +      +G+H    V+L +I   +  W   +    + 
Sbjct: 532 LGDLR----HPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLA 587

Query: 656 VRRGVVKIPGCSMI 669
           +  G++    C+MI
Sbjct: 588 ICYGLISTEPCTMI 601


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 400/714 (56%), Gaps = 48/714 (6%)

Query: 86   KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            K+F  +   + F +  ++  + +  +    + L+  M +  V  + +T  ++ ++ +  +
Sbjct: 342  KMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNV 401

Query: 146  SVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +    GK IH  +L+ G D D  +NN++++ Y  C     A KLF      D VSWN ++
Sbjct: 402  NDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMM 461

Query: 205  AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
            + Y+                                 G++ ++  LF+++P KD  SW+ 
Sbjct: 462  SSYLQI-------------------------------GDMQKSVDLFRQLPGKDAASWNT 490

Query: 265  LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
            +I    +N     AL L   M+      +++     L   ++L+V+  G  +H   +K+G
Sbjct: 491  MIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVG 550

Query: 325  IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +     ++N+LI MY  CGE+  A  +F       L   +SM++    C          D
Sbjct: 551  VLDDGFVRNSLIDMYCKCGEMEKASVIFK-----HLPQESSMMNSEESCD---------D 596

Query: 385  AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            A++E   VSWS+M+SGY Q+ +F + L  F  M    +  D+ TL SV+SAC     L+ 
Sbjct: 597  AVVES--VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLEL 654

Query: 445  GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            G+ +H YI+K G  ++  LG+++IDMY+K G +++A  +F+  +++ V  W ++I G A+
Sbjct: 655  GRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCAL 714

Query: 505  NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            +G   +++ +F  M   G+TPNE++FVGVL AC H GL++EG ++F  M + + + P ++
Sbjct: 715  HGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAE 774

Query: 565  HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
            H+ CMVDL GRAG L E +E I +  +S   + W + L +C+ H + EMG  V +KL+EL
Sbjct: 775  HFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLEL 834

Query: 625  QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            +P   G ++L S+I A++ RW++  ++R +M +RGV K P  S I+    +H F+ GDR+
Sbjct: 835  EPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRS 894

Query: 685  HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
            HPQ  +I + LDE+  +LK  GY+ D   V  D++QE+++  L  HSEKLAIA+G+I+ +
Sbjct: 895  HPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTA 954

Query: 745  PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P  PIR+MKNLR+C DCH   K+ S    REI++RD HRFHHFKHG CSC D+W
Sbjct: 955  PGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 213/446 (47%), Gaps = 30/446 (6%)

Query: 197 LVSWNSILAGYVNADNVE--EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
           L  ++S  +  +N  N E   AK I N       I  N ++ L+ +  N+ +A ++F+E+
Sbjct: 291 LXYFSSTFSDSMNYPNSEVLHAKLIKNGCVG---IRGNHLLNLYAKSQNLEQAHKMFEEI 347

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA-NLTVVKAG 313
           P+ D+ SW+ LIS + +  +  + L LF  M D  V  ++  +  VL +C+ N+   + G
Sbjct: 348 PQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIG 407

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H   ++ G++    L N+++  Y  C     AEKLF      D +SWN M+S YL+ 
Sbjct: 408 KGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQI 467

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G ++K+  LF  +  KD  SW+TMI G  ++      L L  +M   G   ++ T    +
Sbjct: 468 GDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIAL 527

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF-HGTEEKGV 492
              + L  L  GK IH  + K G+  +  +  +LIDMY K G ++ A  +F H  +E  +
Sbjct: 528 VLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSM 587

Query: 493 --------------SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
                          SW++++ G+  NG  + +L+ FS M  S V  ++ T   V+ AC 
Sbjct: 588 MNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACA 647

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
             G+++ G R  +  IQ+     +      ++D+  + G L +A  LI +     +V  W
Sbjct: 648 SAGVLELG-RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDA-WLIFNQAKDRNVVLW 705

Query: 599 GALLGACKKHGDHEMGERVGRKLVEL 624
            +++  C  HG        GR+ V L
Sbjct: 706 TSMISGCALHGQ-------GREAVRL 724



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/444 (23%), Positives = 184/444 (41%), Gaps = 78/444 (17%)

Query: 1   MTLATKLAHLSSTIKSSVNAKPI----------FKPTINLSILETHLQKCQSFKQFTQIL 50
            TL+  L   SS +  S   K I              +N SIL+ ++ KC+ F    ++ 
Sbjct: 388 FTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYV-KCRCFGYAEKLF 446

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
                 GL+A+    S  I  S+  L   +M  S  +F  L   +   +NTM+   ++  
Sbjct: 447 ------GLMAEKDTVSWNIMMSS-YLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNG 499

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVN 169
             + A+ L   M+      +  T+ + A   A  LSV   GK IH  VLK G   D +V 
Sbjct: 500 CERVALELLYKMVAAGPAFNKLTFSI-ALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVR 558

Query: 170 NTLINMYAVCGDLSAARKLFDESP---------------VLDLVSWNSILAGYVNADNVE 214
           N+LI+MY  CG++  A  +F   P               V++ VSW+S+++GYV     E
Sbjct: 559 NSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFE 618

Query: 215 EA---------------KFIYNKMPER------------------------NIIASNSMI 235
           +A               KF    +                           ++   +S+I
Sbjct: 619 DALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSII 678

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G++ +A  +F +   +++V W+++IS    +    EA+ LF  MI+  +  +EV
Sbjct: 679 DMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEV 738

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             V VL+AC++  +++ G     L  ++ GI         ++ +Y   G +   ++    
Sbjct: 739 SFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFI-- 796

Query: 355 GHNLDLISWNSMISGYLKCGSVEK 378
            HN  +   +S+   +L    V K
Sbjct: 797 -HNNAISKLSSVWRSFLSSCRVHK 819


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/802 (33%), Positives = 429/802 (53%), Gaps = 100/802 (12%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           ++ TGL+ D F  + L+ F      F+  + + ++F  +   N   +N+M+R +      
Sbjct: 213 VVKTGLVEDVFVGNALVSF-YGTHGFV--TDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269

Query: 113 QQAICLYKLMLNNN--------VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
           +++  L   M+  N        V       P+ A+   + L    GK +H   +K   D 
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL----GKGVHGWAVKLRLDK 325

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----------------- 207
           ++ +NN L++MY+ CG ++ A+ +F  +   ++VSWN+++ G+                 
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385

Query: 208 -----VNADNVE-------------------------EAKFIYNKMPERNIIASNSMIVL 237
                V AD V                          + +F+YN++       +N+ +  
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL------VANAFVAS 439

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+++ A R+F  +  K + SW+ALI  + Q+     +L   + M    ++ D   V
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+LSAC+ L  ++ G  VH   ++  +E                               
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLE------------------------------- 528

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL  + S++S Y+ CG +   +ALFDAM +K +VSW+T+I+GY Q+      L +F +M
Sbjct: 529 RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 588

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
             +GI+    +++ V  AC+ L +L  G+  HAY  K+ L+ ++ +  +LIDMY K G +
Sbjct: 589 VLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSI 648

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
             + +VF+G +EK  +SWNA+I+G+ ++GLA +++++F EM+++G  P+++TF+GVL AC
Sbjct: 649 TQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI-ESMPMSPDVA 596
            H GL+ EG R+ + M     L+PN KHY C++D+LGRAG L +A  ++ E M    DV 
Sbjct: 709 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 768

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W +LL +C+ H + EMGE+V  KL EL+P+    +VLLSN++A  G+W+DV +VR  M 
Sbjct: 769 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMN 828

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
              + K  GCS IE N  +  F+ G+R      EI ++   +  K+   GY PDT+ V  
Sbjct: 829 EMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQH 888

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+ +EEK   L  HSEKLA+ +GLI  S    IR+ KNLRIC DCH AAK IS+  +REI
Sbjct: 889 DLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREI 948

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           VVRD  RFHHFK+G CSC D+W
Sbjct: 949 VVRDNKRFHHFKNGVCSCGDYW 970



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 235/532 (44%), Gaps = 76/532 (14%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           LL QAS  R  +  G+ IH  V  +    +D  +   +I MYA+CG    +R +FD    
Sbjct: 89  LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM-------PE---------------------- 225
            +L  WN++++ Y   +  +E    + +M       P+                      
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208

Query: 226 -----------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   N+++  +G  G V +A +LF  MP+++LVSW+++I  +  N  
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 275 YEEALVLFMNMI----DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            EE+ +L   M+    D   M D   +V+VL  CA    +  G  VH  AVK+ ++  + 
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L NAL+ MYS CG IT A+ +F   +N +++SWN+M+ G+   G        FD + +  
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH---GTFDVLRQ-- 383

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                 M++G                     ++ DE T+++ +  C H   L   K +H 
Sbjct: 384 ------MLAG------------------GEDVKADEVTILNAVPVCFHESFLPSLKELHC 419

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y  K     N ++    +  Y K G +  A  VFHG   K V+SWNALI G A +     
Sbjct: 420 YSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRL 479

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           SL+   +MK SG+ P+  T   +L AC  +  +  G +  +  I  + LE +   Y  ++
Sbjct: 480 SLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG-KEVHGFIIRNWLERDLFVYLSVL 538

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            L    G L   + L ++M     + +W  ++    ++G  +    V R++V
Sbjct: 539 SLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALGVFRQMV 589



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/569 (22%), Positives = 258/569 (45%), Gaps = 79/569 (13%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALRL 145
           +F  L S N F +N ++ +Y +  +  + +  +  M++  ++  D++TYP + +A A   
Sbjct: 142 VFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMS 201

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  G  +H  V+K G   DV+V N L++ Y   G ++ A +LFD  P  +LVSWNS++ 
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 261

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
            + +    EE+  +  +M E N                                      
Sbjct: 262 VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKL 321

Query: 228 -----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                ++ +N+++ ++ + G +  A  +FK    K++VSW+ ++  +           + 
Sbjct: 322 RLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVL 381

Query: 283 MNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
             M+     V  DEV +++ +  C + + + +   +H  ++K        + NA +  Y+
Sbjct: 382 RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYA 441

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG ++ A+++F    +  + SWN+                               +I G
Sbjct: 442 KCGSLSYAQRVFHGIRSKTVNSWNA-------------------------------LIGG 470

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           +AQ +    +L   ++M+  G+ PD  T+ S++SAC+ L +L  GK +H +I +N L+ +
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             +  +++ +Y+  G +     +F   E+K + SWN +I G+  NG  D++L +F +M  
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 590

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G+    I+ + V GAC  +  +  G R  ++   +H LE ++     ++D+  + G + 
Sbjct: 591 YGIQLCGISMMPVFGACSLLPSLRLG-REAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 649

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHG 609
           ++ ++   +      A+W A++     HG
Sbjct: 650 QSSKVFNGLK-EKSTASWNAMIMGYGIHG 677



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 179/400 (44%), Gaps = 36/400 (9%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMV 292
           +I ++   G+  ++  +F  +  K+L  W+A+IS Y +NE+Y+E L  F+ MI    ++ 
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      V+ ACA ++ V  G +VH L VK G+   + + NAL+  Y + G +T A +LF
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     +L+SWNSMI  +   G  E++  L   M+E                        
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME------------------------ 281

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
              E       PD ATLV+V+  C     +  GK +H +  K  L    +L   L+DMY 
Sbjct: 282 ---ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYS 338

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG--VTPNEITF 530
           K GC+ NA  +F     K V SWN ++ GF+  G    + ++  +M   G  V  +E+T 
Sbjct: 339 KCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI 398

Query: 531 VGVLGACRHMGLVDE-GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           +  +  C H   +      H  S+ QE     N       V    + G L  A+ +   +
Sbjct: 399 LNAVPVCFHESFLPSLKELHCYSLKQE--FVYNELVANAFVASYAKCGSLSYAQRVFHGI 456

Query: 590 PMSPDVATWGALLGACKKHGDHEMG--ERVGRKLVELQPD 627
             S  V +W AL+G   +  D  +     +  K+  L PD
Sbjct: 457 -RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPD 495



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 173/394 (43%), Gaps = 60/394 (15%)

Query: 18  VNAKPI-FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL 76
           +NA P+ F  +   S+ E H   C S KQ      + +   L+A+ F AS     S    
Sbjct: 399 LNAVPVCFHESFLPSLKELH---CYSLKQ------EFVYNELVANAFVASYAKCGS---- 445

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
               +SY+ ++F  + S     +N ++  + Q N P+ ++  +  M  + +  D++T   
Sbjct: 446 ----LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 501

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           L  A +   S+  GK +H  +++   + D++V  +++++Y  CG+L   + LFD      
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 561

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMP-------------------------------- 224
           LVSWN+++ GY+     + A  ++ +M                                 
Sbjct: 562 LVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA 621

Query: 225 -------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                  E +   + S+I ++ + G++ ++ ++F  + +K   SW+A+I  Y  + + +E
Sbjct: 622 YALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKE 681

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALI 336
           A+ LF  M       D++  + VL+AC +  ++  G   +  +    G++  +     +I
Sbjct: 682 AIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVI 741

Query: 337 HMYSSCGEITTAEKLF--DAGHNLDLISWNSMIS 368
            M    G++  A ++   +     D+  W S++S
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 379/712 (53%), Gaps = 77/712 (10%)

Query: 134 YPLLAQASALRLSVF-------EGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAA 185
           YPL +      L  F       +G+ +H H++     +++ Y+N  L   YA CG +S A
Sbjct: 55  YPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQA 114

Query: 186 RKLFDESPVLDLVSWNSILAGYVN--------------------ADN------------- 212
             +FD   + +   WN ++ GY +                    ADN             
Sbjct: 115 EVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDL 174

Query: 213 --VEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
             VE  + +++++     E +I   NS++ ++ + G++  A  +F  M ++DL SW+ +I
Sbjct: 175 LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y +N     A ++F  M    +  D   ++ +LSACA+L  VK G  +H  AV+  I 
Sbjct: 235 SGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG 294

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            Y                     K F           NS+I  Y  C  +  AR LF+ +
Sbjct: 295 NY--------------------NKFFT----------NSLIEMYCNCNCMVDARRLFERV 324

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             KD VSW++MI GYA++    E+L LF  M   G  PD+ T ++V+ AC  + AL  G 
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM 384

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH+Y+ K G   N+I+GT L+DMY K G +  +  VF    +K + SW+A++ G+ ++G
Sbjct: 385 SIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              +++ +   MK + V P+   F  +L AC H GLV EG   F  M +E+ ++P   HY
Sbjct: 445 RGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHY 504

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMVDLLGRAG L EA  +I +M + P    W ALL A + H + ++ E   +K+ ++ P
Sbjct: 505 SCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP 564

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
                ++ LSNI+A++ RWDDV  VR M+ R+G+ K PGCS IE + ++H FL GD++H 
Sbjct: 565 KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQ 624

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  +I   L+E+ ++LK  GY PDT  V +D+++E KE  L+ HSE+LAIAF LI   P 
Sbjct: 625 QTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPG 684

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             IRI KNLR+C DCHT  K IS    REI++RD HRFHHF  G CSC D+W
Sbjct: 685 TVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 235/503 (46%), Gaps = 79/503 (15%)

Query: 41  QSFKQFTQILSQMILTGLIAD-TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIF 99
           +SFKQ  Q+ + MI   ++ + T+  ++L  F         MS +  IF  +   N F++
Sbjct: 73  KSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL---MSQAEVIFDGIVLKNSFLW 129

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N M+R Y    +P +++ LY+ ML      DN+TYP + +A    L V  G+ +H  V+ 
Sbjct: 130 NFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVV 189

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADN------ 212
            G +SD+YV N+L+ MYA  GD+  AR +FD     DL SWN++++GY  NAD+      
Sbjct: 190 CGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLV 249

Query: 213 ----------------------------VEEAKFIY-----NKMPERNIIASNSMIVLFG 239
                                       V+E K I+     N +   N   +NS+I ++ 
Sbjct: 250 FDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYC 309

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
               + +A RLF+ +  KD VSW+++I  Y +N    E+L LF  M       D+V  ++
Sbjct: 310 NCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIA 369

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL AC  +  ++ G S+H+  VK G +    +  AL+ MYS CG +  + ++FD   +  
Sbjct: 370 VLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKS 429

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+SW++M++G                               Y  H +  E +S+   M+ 
Sbjct: 430 LVSWSAMVAG-------------------------------YGLHGRGREAISILDGMKA 458

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCV 477
           + + PD     S++SAC+H   + +GK I   + K    +   L   + ++D+  + G +
Sbjct: 459 NSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE-YNVKPALSHYSCMVDLLGRAGHL 517

Query: 478 DNALEVFHGTEEKGVSS-WNALI 499
           D A  +    E K  S  W AL+
Sbjct: 518 DEAYVIIRTMEIKPTSDIWAALL 540


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 278/832 (33%), Positives = 411/832 (49%), Gaps = 136/832 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            ++  S     Q  +Q+IL G   D    S L K +  L     + Y+  IF  ++ P+ 
Sbjct: 27  FKRSTSISHLAQTHAQIILHGFRNDI---SLLTKLTQRLSDLGAIYYARDIFLSVQRPDV 83

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F+FN +MR +     P  +                             LSVF       H
Sbjct: 84  FLFNVLMRGFSVNESPHSS-----------------------------LSVFA------H 108

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           + K+   +D+  N++    YA    +SAA    D+                  A  V   
Sbjct: 109 LRKS---TDLKPNSS---TYAFA--ISAASGFRDD-----------------RAGRVIHG 143

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + + +      ++ SN ++ ++ +   V +A ++F  MP+KD + W+ +IS Y +NEMY 
Sbjct: 144 QAVVDGCDSELLLGSN-IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202

Query: 277 EALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY------- 328
           E++ +F ++I+     +D   ++ +L A A L  ++ G  +H+LA K G  CY       
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG--CYSHDYVLT 260

Query: 329 --------------------------INLQNALIHMYSSCGEITTAEKLFD--------- 353
                                     I   NA+IH Y+S GE   +  LF          
Sbjct: 261 GFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARL 320

Query: 354 -----------AGHNL------------DLISWNSMISG----YLKCGSVEKARALFDAM 386
                      +GH +            + +S  S+ +     Y K   +E AR LFD  
Sbjct: 321 RSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDES 380

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            EK + SW+ MISGY Q+    + +SLF EMQ     P+  T+  ++SAC  L AL  GK
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           W+H  +R    + +  + T LI MY K G +  A  +F    +K   +WN +I G+ ++G
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHG 500

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L +F EM  SG+TP  +TF+ VL AC H GLV EG   FNSMI  +  EP+ KHY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMVD+LGRAG L+ A + IE+M + P  + W  LLGAC+ H D  +   V  KL EL P
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
           D+ G+HVLLSNIH++   +     VR    +R + K PG ++IE     H F +GD++HP
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHP 680

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q+ EI   L+++  K++  GY P+T     D+++EE+E  +  HSE+LAIAFGLI   P 
Sbjct: 681 QVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPG 740

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             IRI+KNLR+C DCHT  K IS+  +R IVVRD +RFHHFK G CSC D+W
Sbjct: 741 TEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/469 (46%), Positives = 312/469 (66%), Gaps = 3/469 (0%)

Query: 333 NALIHMYSSCGEITTAEKLF---DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
           NAL+  Y + G    A +LF    +  +LD++SW +M+ G  + G V+ AR LFD M E+
Sbjct: 131 NALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPER 190

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           +++SW+ MISGY +  +F + L +F +M+  GI  +     S + ACT    L +G+ +H
Sbjct: 191 NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVH 250

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            ++ ++G+ ++  L T ++DMY K G V+ A  VF     KG++SWN +I G A++G   
Sbjct: 251 RWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCK 310

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            ++E+F EM++  V P+++T V VL AC H G+V +GH +FN ++Q + +EP  +HYGCM
Sbjct: 311 DAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCM 370

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           VDL GRAG+L EA+++I+ MPM PD+   GAL GACK H D ++GE +G +++EL P + 
Sbjct: 371 VDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQNS 430

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G +VLL+N+ AS G+W DV +VR +M  R V K  G S+IE +G + EF  G   H Q  
Sbjct: 431 GRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEK 490

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPI 749
           EI   + +M +K++LEGY PDT +V  DI +EEKE  L  HSEKLAIAFGL+   P + +
Sbjct: 491 EIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTV 550

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           RI KNLR+C DCH A KFISR F+REIVVRDR+RFHHFK G+CSC D+W
Sbjct: 551 RITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 183/446 (41%), Gaps = 76/446 (17%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +  +  Q  SQ++  GL +      RL+ F       +   Y+ ++ A    P+  +FN 
Sbjct: 13  TISELKQHHSQLVRLGLASRPEHVRRLLAFLARDPAGV--PYAARLLAHHPDPHPALFNP 70

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           +  +      P  A     LML+  +  D++T P L  A+ L L+     L    +LK  
Sbjct: 71  LFASL----PPHHAAAFLALMLSLPLHPDHFTLPRLLPAAPLPLAAQLHAL----LLKLN 122

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDE--SPV-LDLVSWNSILAGYVNADNVEEAKF 218
           F S  +  N L+  Y   G    A +LF    SP  LD+VSW +++ G            
Sbjct: 123 FHSHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLC---------- 172

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                                R G V +A +LF  MP+++L+SW+A+IS Y +   + +A
Sbjct: 173 ---------------------RLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDA 211

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L +F  M    +  +  V  S + AC    V+  G  VH    + GI     L  A++ M
Sbjct: 212 LEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDM 271

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y  CG +  A  +F       L SWN MI G                             
Sbjct: 272 YCKCGSVEEAWHVFKVLPTKGLTSWNCMIGG----------------------------- 302

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI-RKNGL 457
              A H +  + + LF EM+   + PD+ TLV+V++AC H   +  G     YI ++ G+
Sbjct: 303 --LAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGI 360

Query: 458 KINSILGTTLIDMYMKLGCVDNALEV 483
           +        ++D++ + G +D A +V
Sbjct: 361 EPKMEHYGCMVDLFGRAGLLDEAKKV 386


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 370/670 (55%), Gaps = 66/670 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+KC+      QI +QMI+ GLI D FA+SRLI F   L     + YS KI   +E+PN 
Sbjct: 60  LEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCA-LSESRYLDYSVKILKGIENPNI 118

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNV---GVDNYTYPLLAQASALRLSVFEGKLI 153
           F +N  +R + +   P+++  LYK ML +       D++TYP+L                
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL---------------- 162

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
                                 + VC DL              L S   ++ G+V    +
Sbjct: 163 ----------------------FKVCADLR-------------LSSLGHMILGHVLKLRL 187

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
           E    ++N           + I +F   G++  A ++F E P +DLVSW+ LI+ Y++  
Sbjct: 188 ELVSHVHN-----------ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             E+A+ ++  M    V  D+V ++ ++S+C+ L  +  G   +    + G+   I L N
Sbjct: 237 EAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVN 296

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ M+S CG+I  A ++FD      ++SW +MISGY +CG ++ +R LFD M EKDVV 
Sbjct: 297 ALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVL 356

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ MI G  Q  +  + L+LF EMQ    +PDE T++  +SAC+ L ALD G WIH YI 
Sbjct: 357 WNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIE 416

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K  L +N  LGT+L+DMY K G +  AL VFHG + +   ++ A+I G A++G A  ++ 
Sbjct: 417 KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAIS 476

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
            F+EM  +G+ P+EITF+G+L AC H G++  G  +F+ M     L P  KHY  MVDLL
Sbjct: 477 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLL 536

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG+L+EA+ L+ESMPM  D A WGALL  C+ HG+ E+GE+  +KL+EL P   G +V
Sbjct: 537 GRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYV 596

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LL  ++     W+D    R MM  RGV KIPGCS IE NGI+ EF+  D++ P+  +I +
Sbjct: 597 LLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYD 656

Query: 694 MLDEMAKKLK 703
            L  + + ++
Sbjct: 657 RLHCLGRHMR 666



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM--YMKLGCVDNALEVFHG 486
           L+S++  C  L+ L Q   I A +  NGL ++    + LI      +   +D ++++  G
Sbjct: 56  LLSLLEKCKLLLHLKQ---IQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKG 112

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT---PNEITFVGVLGACRHMGLV 543
            E   + SWN  I GF+ +    +S  ++ +M + G     P+  T+  +   C  + L 
Sbjct: 113 IENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLS 172

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
             GH     +++  RLE  S  +   + +    G ++ A ++ +  P+  D+ +W  L+ 
Sbjct: 173 SLGHMILGHVLK-LRLELVSHVHNASIHMFASCGDMENARKVFDESPVR-DLVSWNCLIN 230

Query: 604 ACKKHGDHEMGERVGRKLVE---LQPD 627
             KK G+ E    V  KL+E   ++PD
Sbjct: 231 GYKKIGEAEKAIYV-YKLMESEGVKPD 256


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/603 (40%), Positives = 355/603 (58%), Gaps = 42/603 (6%)

Query: 198 VSWNSILAGYVNA-DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           V+WNS+LAG       ++EA+ ++ K+PE + ++ N+M+  + R  N+  A   F++MP 
Sbjct: 7   VTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPI 66

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           KD  SW+ +I+ + QN+  ++A  LF+ M    V+                         
Sbjct: 67  KDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVT------------------------ 102

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
                           NA+I  Y  CG++ +A KLF+      +++W +MI+GY+K G +
Sbjct: 103 ---------------WNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRI 147

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
             A  LF+ M EK++V+W+ MI+GY ++ +  + + LF  M   GI+P+ +TL S +  C
Sbjct: 148 GLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGC 207

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           + L AL  G+ +H  + K+ L  ++  GT+LI MY K G +++  ++F     + V +WN
Sbjct: 208 SELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWN 267

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I G+A +G   K+L +F EM + G+ P+ ITFV VL AC H G  D G ++F+SM ++
Sbjct: 268 AMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKD 327

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + L     HY CMVDLLGRAG L EA +LIE MP  P  A +G LLGAC+ H + EM E 
Sbjct: 328 YGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEF 387

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
             +KL+ L P     +V L+N++A+  RWD V  VR  M    VVK PG S IE   + H
Sbjct: 388 ASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAH 447

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLA 735
           +F +GD+ HP++  I   L E+ KK+KL GY PD LE A  D+ +E+KE  L  HSEKLA
Sbjct: 448 QFRSGDKFHPELASIHGKLKELEKKMKLAGYVPD-LEFALHDVGEEQKEQLLLWHSEKLA 506

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IA+GLI + P  PIR+ KNLR+C DCH A K+IS+   REI+VRD  RFHHFK G CSC 
Sbjct: 507 IAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCA 566

Query: 796 DFW 798
           D+W
Sbjct: 567 DYW 569



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 161/315 (51%), Gaps = 32/315 (10%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           NT+I  +A    +  AR LF   P  ++V+WN++++GYV   +++ A  ++ K P ++++
Sbjct: 73  NTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVV 132

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           A  +MI  + + G +  A RLF++MP+K+LV+W+A+I+ Y +N   E+ + LF  M+   
Sbjct: 133 AWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFG 192

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  +   + S L  C+ L+ ++ G  VH L  K  +        +LI MY  CG +    
Sbjct: 193 IQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGW 252

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           KLF      D+++WN+MISGY + G  +KA  LFD MIEK                    
Sbjct: 253 KLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK-------------------- 292

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLI 468
                      G++PD  T V+V+ AC H    D G K+ H+  +  GL       T ++
Sbjct: 293 -----------GMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMV 341

Query: 469 DMYMKLGCVDNALEV 483
           D+  + G +  A+++
Sbjct: 342 DLLGRAGKLVEAVDL 356



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 52/248 (20%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLL--AQAS 141
           ++F  +   N   +N M+  YI+ +  +  + L++ M+   +  ++ T    LL  ++ S
Sbjct: 152 RLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELS 211

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           AL+L    G+ +H  V K+    D     +LI+MY  CG L    KLF + P  D+V+WN
Sbjct: 212 ALQL----GRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWN 267

Query: 202 SILAGYVNADNVEEAKFIYNKMPERN-----------IIASN------------------ 232
           ++++GY      ++A  ++++M E+            ++A N                  
Sbjct: 268 AMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKD 327

Query: 233 -----------SMIVLFGRKGNVAEACRLFKEMPKKD--LVSWSALISC--YEQNEMYEE 277
                       M+ L GR G + EA  L ++MP K    V  + L +C  ++  EM E 
Sbjct: 328 YGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEF 387

Query: 278 ALVLFMNM 285
           A    +N+
Sbjct: 388 ASQKLLNL 395


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/484 (46%), Positives = 306/484 (63%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           SVHA A++ G     ++Q+  + MY++ G++  A   F    + D++   +M+      G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             + AR LFD M ++D V+W+ MI+GY    +  E L LF EM+H G    E TLVS ++
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L AL++GKW+H+     G++++  LGT LIDMY K G V  A+EVF    E+ V +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W + + G AMNG+    L +F  M+ +GV PN +TFV VL  C   GLVDEG   F+SM 
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             H ++P  +HYGCMVDL GRAG L +A   I  MP+ P    WGALL A + H + E+G
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           +    KL+ ++  +D  HVLLSNI+A    W  V  VR MM  +GV K+PGCS IE  G 
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +HEF  G +THP+  EI+ ML EM ++L+L+GY  +T EV FDI++E+KE  +  HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           AIAFGL+ +     IRI+KNLR+C DCH   K IS+ F+REIV+RDR+RFHHFK G+CSC
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 702

Query: 795 MDFW 798
            D+W
Sbjct: 703 KDYW 706



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 171/410 (41%), Gaps = 75/410 (18%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL------- 152
           N+++RA  +   P  A   ++ +    +  DNY++  L +A+    +     L       
Sbjct: 166 NSLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAG 222

Query: 153 -IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   L+ G   D +V +  ++MYA  GD+ AAR  F E    D+V   +++       
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
             + A+                                LF  MP++D V+W+A+I+ Y  
Sbjct: 283 EADAAR-------------------------------ELFDGMPQRDHVAWNAMIAGYVH 311

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
                EAL LF  M      V EV +VS L+ACA L  ++ G  VH+ A   G+   + L
Sbjct: 312 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 371

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI MYS CG +  A ++FD+    ++ +W S                          
Sbjct: 372 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS-------------------------- 405

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                 +SG A +    + L+LF  M+  G+ P+  T V V+  C+    +D+G+     
Sbjct: 406 -----AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDS 460

Query: 452 IRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           ++ N G+         ++D+Y + G +D+A+   +G   E     W AL+
Sbjct: 461 MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E   + ++F  +   +   +N M+  Y+     ++A+ L+  M +    V   T      
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  GK +H      G    V +   LI+MY+ CG ++AA ++FD     ++ +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 200 WNSILAG 206
           W S ++G
Sbjct: 403 WTSAVSG 409


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/468 (45%), Positives = 306/468 (65%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L N ++  Y + GE+  A ++FD     D++SWN+MI GY   G V+ AR +F+ M ++D
Sbjct: 108 LCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRD 167

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
             SWS+M+S Y +  +  + L L+ EM+   + PD  T+VSV+SAC+ + AL  G  +H 
Sbjct: 168 AFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQ 227

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++  NG++++  LGT LIDMY K G ++N++ VFH    K V +W+++IIG A +G    
Sbjct: 228 FVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHD 287

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +FS M   G+ PNE+TF+GVL +C H+GLV +G ++F+SM   H + P  +HYGCMV
Sbjct: 288 ALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMV 347

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G ++EA++LI  MP  PD   W ALLGAC+ + + E+ E    KL  L P  DG
Sbjct: 348 DLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADG 407

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI+A    W+ V E+R  + R  + +IPG S IE    IHEF++GDR+HP+  E
Sbjct: 408 HYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKE 467

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  ML EM  +L+  GY P T  V  DID++ KE  L  HSEKLA+AFGL+T    + +R
Sbjct: 468 IYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLR 527

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR C DCH+A K I+  ++R++++RDR+RFHHF  G CSC D+W
Sbjct: 528 ITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 44/245 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  + ++F  ++  + F +++MM AY +    + A+ L++ M    V  D  T   +  
Sbjct: 152 EVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLS 211

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  G  +H  V   G + DV +   LI+MYA CGD+  + ++F   PV D+++
Sbjct: 212 ACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLT 271

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS---------------------------- 231
           W+S++ G  N     +A  ++++M    +  +                            
Sbjct: 272 WSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMS 331

Query: 232 ------------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISC---YEQNEMY 275
                         M+ L GR G++ EA +L ++MP + D V W AL+     Y+  E+ 
Sbjct: 332 VVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVA 391

Query: 276 EEALV 280
           EEA+ 
Sbjct: 392 EEAMA 396



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 133/312 (42%), Gaps = 49/312 (15%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F+   ++ AY +      A   +      +V + N    ++  A   R  V E + + D 
Sbjct: 76  FVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCN----VMLAAYVTRGEVAEARRVFDG 131

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY--------- 207
           +     + D+   NT+I+ YAV G++  AR++F+     D  SW+S+++ Y         
Sbjct: 132 MR----ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDA 187

Query: 208 -----------VNAD-------------------NVEEAKFIYNKMPERNIIASNSMIVL 237
                      VN D                     E  +F+ +   E ++    ++I +
Sbjct: 188 LELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDM 247

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++  + R+F  MP KD+++WS++I     +    +AL LF  M+   +  +EV  
Sbjct: 248 YAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTF 307

Query: 298 VSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAG 355
           + VL +C +L +V  G     +++V  G+   +     ++ +    G I  A++L  D  
Sbjct: 308 IGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMP 367

Query: 356 HNLDLISWNSMI 367
              D + W +++
Sbjct: 368 FEPDAVIWRALL 379


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/752 (34%), Positives = 409/752 (54%), Gaps = 76/752 (10%)

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
             +E  +   +N+++ A++      +A+ L++ M    VGV++ TY  ++   A     F
Sbjct: 209 GLMEKDDPVSWNSIISAHVGEGESLEALSLFRRM--QEVGVESNTYTFVSALQACEGPTF 266

Query: 149 E--GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ IH  +LK+   +DVYV+N LI MYA CG +  A ++F      D VSWN++L+G
Sbjct: 267 IKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSG 326

Query: 207 YVNADNVEEAKFIYNKM------PER----NIIAS------------------------- 231
            V  D   +A   +  M      P++    N+IA+                         
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSN 386

Query: 232 ----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               NS+I ++G+   V      F+ MP+KDL+SW+ +I+ Y QNE + +AL L   +  
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQL 446

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            ++ VD +++ S+L AC+ L   K    +H   +K G+   I +QNA++++Y   GE+  
Sbjct: 447 EKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVY---GELAL 502

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                       V+ AR +F+++  KD+VSW++MI+    +   
Sbjct: 503 ----------------------------VDYARHVFESINSKDIVSWTSMITCCVHNGLA 534

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF  +    I PD  TLVSV+ A   L +L +GK IH ++ + G  +  ++  +L
Sbjct: 535 IEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSL 594

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY + G ++NA  +F+  +++ +  W ++I    M+G    ++++FS+M    V P+ 
Sbjct: 595 VDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDH 654

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           ITF+ +L AC H GLV EG +HF  M  E++LEP  +HY C+VDLL R+  L+EA   + 
Sbjct: 655 ITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVR 714

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           +MP+ P    W ALLGAC+ H ++++GE   +KL++L  ++ G +VL+SN  A+ GRW+D
Sbjct: 715 NMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWND 774

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-G 706
           V EVR +M    + K PGCS IE    IH F+A D++HPQ N I   L +  K LK + G
Sbjct: 775 VEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGG 834

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y   T  V  D+ +EEK   L+ HSE+LA+ +GL+  S    +RI KNLRIC+DCH   K
Sbjct: 835 YRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFK 894

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S    R +VVRD  RFHHF+ G CSC DFW
Sbjct: 895 IASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 149/586 (25%), Positives = 263/586 (44%), Gaps = 105/586 (17%)

Query: 134 YPLL-AQASALRL-----SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAAR 186
           +PL  A + AL L     ++ +G+ +H H LK   +   V+++   ++MY  CG    A 
Sbjct: 43  FPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAV 102

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----------------------P 224
           K+FD+     + +WN+++   V+A    EA  +Y +M                       
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFK 162

Query: 225 ERN-----------------IIASNSMIVLFGRKGNVAEACRLFKE--MPKKDLVSWSAL 265
           ER                  +   N++I ++ + G++  A  LF    M K D VSW+++
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           IS +       EAL LF  M +  V  +    VS L AC   T +K G  +HA+ +K   
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNH 282

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + + NALI MY++CG++  AE++F +    D +SWN                     
Sbjct: 283 FTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWN--------------------- 321

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                     T++SG  Q+D +S+ ++ F +MQ  G +PD+ +++++I+A      L  G
Sbjct: 322 ----------TLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG 371

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
             +HAY  K+G+  N  +G +LIDMY K  CV      F    EK + SW  +I G+A N
Sbjct: 372 MEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQN 431

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM---GLVDEGHRHFNSMIQEHRLEPN 562
                +L +  +++   +  + +    +L AC  +    L+ E H +         L  N
Sbjct: 432 ECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQN 491

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
           +     +V++ G   ++  A  + ES+  S D+ +W +++  C  +G       +   L+
Sbjct: 492 A-----IVNVYGELALVDYARHVFESIN-SKDIVSWTSMITCCVHNGLAIEALELFNSLI 545

Query: 623 E--LQPDHDGFHVLLSNIHAS-------KGRWDDVLEVRGMMVRRG 659
           E  ++PD      L+S ++A+       KG+     E+ G ++R+G
Sbjct: 546 ETNIEPD---LITLVSVLYAAAALSSLKKGK-----EIHGFLIRKG 583



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 204/453 (45%), Gaps = 40/453 (8%)

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A F+  +    ++      + ++G+ G+  +A ++F +M ++ + +W+A+I        Y
Sbjct: 70  AHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRY 129

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            EA+ L+  M    V +D      VL AC      + G  +H +AVK G   ++ + NAL
Sbjct: 130 VEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNAL 189

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA--MIEKDVVS 393
           I MY+                               KCG +  AR LFD+  M + D VS
Sbjct: 190 IAMYA-------------------------------KCGDLGGARVLFDSGLMEKDDPVS 218

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+++IS +    +  E LSLF  MQ  G+  +  T VS + AC     +  G+ IHA I 
Sbjct: 219 WNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K+    +  +   LI MY   G +++A  VF     K   SWN L+ G   N +   ++ 
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAIN 338

Query: 514 MFSEMKKSGVTPNEITFVGVLGAC-RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            F +M+ SG  P++++ + ++ A  R   L+     H  ++  +H ++ N      ++D+
Sbjct: 339 HFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAI--KHGIDSNMHIGNSLIDM 396

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
            G+   +K      E MP   D+ +W  ++    ++  H     + RK+   + D D   
Sbjct: 397 YGKCCCVKYMGSAFEYMP-EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPM- 454

Query: 633 VLLSNIHASKGRWDDVL--EVRGMMVRRGVVKI 663
           ++ S + A  G   + L  E+ G +++ G+  I
Sbjct: 455 MIGSILLACSGLKSEKLIKEIHGYVLKGGLADI 487



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 206/466 (44%), Gaps = 80/466 (17%)

Query: 37  LQKCQ--SFKQFTQILSQMIL-TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C+  +F +  + +  +IL +    D + ++ LI    +     +    FK   F + 
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   +NT++   +Q ++   AI  ++ M ++    D  +   +  AS    ++  G  +
Sbjct: 318 VS---WNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEV 374

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD-- 211
           H + +K G DS++++ N+LI+MY  C  +      F+  P  DL+SW +I+AGY   +  
Sbjct: 375 HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECH 434

Query: 212 --------NVEEAKFIYNKM-------------PER---------------NIIASNSMI 235
                    V+  K   + M              E+               +I+  N+++
Sbjct: 435 LDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIV 494

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++G    V  A  +F+ +  KD+VSW+++I+C   N +  EAL LF ++I+  +  D +
Sbjct: 495 NVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLI 554

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +VSVL A A L+ +K G  +H   ++ G      + N+L+ MY+ CG +  A  +F+  
Sbjct: 555 TLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYV 614

Query: 356 HNLDLISWNSMI--SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              DLI W SMI  +G   CG                                  + + L
Sbjct: 615 KQRDLILWTSMINANGMHGCG---------------------------------KDAIDL 641

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           F +M    + PD  T ++++ AC+H   + +GK  H  I KN  K+
Sbjct: 642 FSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ-HFEIMKNEYKL 686


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/673 (36%), Positives = 367/673 (54%), Gaps = 65/673 (9%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           D   + +   A A    +  G+ IH  V+ +G  S++ ++N+L+NMY  C D+  A K+F
Sbjct: 9   DKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVF 68

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           D                                M  R++++  +M+ ++ + G  ++A  
Sbjct: 69  D-------------------------------GMLLRDVVSWTAMLAVYAQNGCWSQALH 97

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F+ MP+KD VSW+A+I+    N  +++AL LF  M    +  +E  ++S+L AC  L  
Sbjct: 98  VFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLED 157

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +K    +HA A            N+     ++ G                    NS+++ 
Sbjct: 158 LKLARQIHARAAA-----GGFGGNS-----TAVG--------------------NSVVNM 187

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS--ETLSLFMEMQHHGIRPDEA 427
           Y +CGS+   +  FD++ EK +V+WS M++ YAQ    S       F EM+  GI+P E 
Sbjct: 188 YARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEV 247

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           T VS + AC  +  L+ G+ +H     +G ++ + +LG T+I+MY K G   +A  VF  
Sbjct: 248 TFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQ 307

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK + SWN+LI+ +A NG A ++L    EM   G  P+  T V +L    H GL++ G
Sbjct: 308 MPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERG 367

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SPDVATWGALLGAC 605
             HF S IQ+H LEP+S    C+VDLL R G L  AEELI + P    D   W  LL AC
Sbjct: 368 VEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAAC 427

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           K +GD + G R   ++ EL+P H G  V+L+N++AS GRW D   +R MM R  V K PG
Sbjct: 428 KSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPG 487

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           CS IE +G +HEF++G+  HP+I EI   L+++  +++  GY PDT  V  D+++ +KE 
Sbjct: 488 CSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEE 547

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L RHSE+LAI FGL++  P   IR++KNLR+C+DCH A K IS    REIVVRD  RFH
Sbjct: 548 ILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFH 607

Query: 786 HFKHGSCSCMDFW 798
           HFKHG CSC DFW
Sbjct: 608 HFKHGQCSCGDFW 620



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 37/244 (15%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-- 474
           MQ  G RPD+   V  + AC     LD G+ IH+ +  +GL  N I+  +L++MY K   
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQD 60

Query: 475 -----------------------------GCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
                                        GC   AL VF     K   SWNA+I     N
Sbjct: 61  VPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGN 120

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD-EGHRHFNSMIQEHRLEPNSK 564
                +LE+F  M+  G+  NE T + +L AC   GL D +  R  ++         NS 
Sbjct: 121 SKFQDALELFHGMELEGLRSNEFTLLSLLEACG--GLEDLKLARQIHARAAAGGFGGNST 178

Query: 565 HYG-CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
             G  +V++  R G L + ++  +S+     VA W  +L A  +  D   G R  +   E
Sbjct: 179 AVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVA-WSIMLAAYAQSKDGS-GRRAFKFFQE 236

Query: 624 LQPD 627
           ++ +
Sbjct: 237 MEAE 240



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 46/344 (13%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           S +  +F  +   +   +N ++ A +  +  Q A+ L+  M    +  + +T   L +A 
Sbjct: 93  SQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEAC 152

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +   + IH      GF  +   V N+++NMYA CG L   +K FD      LV+W
Sbjct: 153 GGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAW 212

Query: 201 NSILAGYVNADN-------------------------------------VEEAKFIYNKM 223
           + +LA Y  + +                                     +E  + ++ + 
Sbjct: 213 SIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRA 272

Query: 224 P-----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                 E +++  N++I ++G+ G+ ++A  +F +MP+K L+SW++LI  Y  N    EA
Sbjct: 273 AASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEA 332

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIH 337
           L     M+      D    VS+L   ++  +++ G      +++  G+E        L+ 
Sbjct: 333 LSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVD 392

Query: 338 MYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEKA 379
           + +  G +  AE+L  A      D I+W ++++     G  ++ 
Sbjct: 393 LLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRG 436


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/805 (32%), Positives = 424/805 (52%), Gaps = 75/805 (9%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           S+L+   +K +S +   ++ S +I  G+  D    ++L+    +    ++     KIF  
Sbjct: 99  SVLQLCAEK-KSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQ---GRKIFDK 154

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           + +   F++N +M  Y +    ++++ L+K M    V  + YT+  + +  A    V E 
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-- 208
           K +H +VLK GF S+  V N+LI  Y   G + +A  LFDE    D+VSWNS++ G V  
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 209 ---------------------------------NADNVEEAK----FIYNKMPERNIIAS 231
                                            N  N+   +    F         ++ S
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFS 334

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+++ ++ + GN+  A  +F +M    +VSW+++I+ Y +  +Y +A+ LF  M    V 
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVR 394

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D   V S++ ACA  + +  G  VH+  +K G+   + + NALI+MY+ CG +  A  +
Sbjct: 395 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 454

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F      D++SWN+                               MI GY+Q+   +E L
Sbjct: 455 FSKIPVKDIVSWNT-------------------------------MIGGYSQNLLPNEAL 483

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF++MQ    +PD+ T+  V+ AC  L ALD+G+ IH +I + G   +  +   L+DMY
Sbjct: 484 ELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 542

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A  +F    +K + SW  +I G+ M+G  ++++  F+EM+ +G+ P+E +F 
Sbjct: 543 AKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 602

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L AC H GL++EG + FNSM  E  +EP  +HY C+VDLL R G L +A + IESMP+
Sbjct: 603 AILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPI 662

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD   WG LL  C+ H D ++ E+V   + EL+PD+  ++V+L+N++A   +W++V ++
Sbjct: 663 KPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKL 722

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M +RG  + PGCS IE  G  + F+AG+  HPQ  +ID +L ++  +++ E Y+   
Sbjct: 723 RKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMF 782

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  + D  EKE     HSEK A+AFG++ + P   +R+ KN R+C DCH   KF+S+ 
Sbjct: 783 RYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKT 842

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMD 796
              EIV+RD +RFHHFK G CSC D
Sbjct: 843 TKMEIVLRDSNRFHHFKDGLCSCRD 867


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/484 (46%), Positives = 306/484 (63%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           SVHA A++ G     ++Q+  + MY++ G++  A   F    + D++   +M+      G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             + AR LFD M ++D V+W+ MI+GY    +  E L LF EM+H G    E TLVS ++
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L AL++GKW+H+     G++++  LGT LIDMY K G V  A+EVF    E+ V +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W + + G AMNG+    L +F  M+ +GV PN +TFV VL  C   GLVDEG   F+SM 
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             H ++P  +HYGCMVDL GRAG L +A   I  MP+ P    WGALL A + H + E+G
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           +    KL+ ++  +D  HVLLSNI+A    W  V  VR MM  +GV K+PGCS IE  G 
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +HEF  G +THP+  EI+ ML EM ++L+L+GY  +T EV FDI++E+KE  +  HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           AIAFGL+ +     IRI+KNLR+C DCH   K IS+ F+REIV+RDR+RFHHFK G+CSC
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 702

Query: 795 MDFW 798
            D+W
Sbjct: 703 KDYW 706



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 171/410 (41%), Gaps = 75/410 (18%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL------- 152
           N+++RA  +   P  A   ++ +    +  DNY++  L +A+    +     L       
Sbjct: 166 NSLLRALARGRRPHLAFGAFRDL---PLVPDNYSFTFLVRAATALAAAAASALDAALIAG 222

Query: 153 -IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   L+ G   D +V +  ++MYA  GD+ AAR  F E    D+V   +++       
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
             + A+                                LF  MP++D V+W+A+I+ Y  
Sbjct: 283 EADAAR-------------------------------ELFDGMPQRDHVAWNAMIAGYVH 311

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
                EAL LF  M      V EV +VS L+ACA L  ++ G  VH+ A   G+   + L
Sbjct: 312 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 371

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI MYS CG +  A ++FD+    ++ +W S                          
Sbjct: 372 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS-------------------------- 405

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                 +SG A +    + L+LF  M+  G+ P+  T V V+  C+    +D+G+     
Sbjct: 406 -----AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDS 460

Query: 452 IRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           ++ N G+         ++D+Y + G +D+A+   +G   E     W AL+
Sbjct: 461 MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 510



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E   + ++F  +   +   +N M+  Y+     ++A+ L+  M +    V   T      
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  GK +H      G    V +   LI+MY+ CG ++AA ++FD     ++ +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 200 WNSILAG 206
           W S ++G
Sbjct: 403 WTSAVSG 409


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/652 (38%), Positives = 373/652 (57%), Gaps = 48/652 (7%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA----------DNV 213
           +DV+  N++I   A  GD + A   F     L L    S     + A             
Sbjct: 39  TDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQT 98

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            +  F++    + +I  S+++IV++   G + +A ++F E+PK+D+VSW+++I  Y+ N 
Sbjct: 99  HQQAFVFGY--QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNG 156

Query: 274 MYEEALVLFMNMI------DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
              +A+ LF +++      D  + +D + +VSV+SAC+ +       S+H+  +K G + 
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDR 216

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            +++ N L+  Y+  GE                             G V  AR +FD ++
Sbjct: 217 GVSVGNTLLDAYAKGGE-----------------------------GGVAVARKIFDQIV 247

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACTHLVALDQGK 446
           +KD VS+++++S YAQ    +E   +F  +  + +    A TL +V+ A +H  AL  GK
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH  + + GL+ + I+GT++IDMY K G V+ A + F   + K V SW A+I G+ M+G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            A K+LE+F  M  SGV PN ITFV VL AC H GL  EG R FN+M     +EP  +HY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY 427

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDLLGRAG L++A +LI+ M M PD   W +LL AC+ H + E+ E    +L EL  
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDS 487

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            + G+++LLS+I+A  GRW DV  VR +M  RG+VK PG S++E NG +H FL GD  HP
Sbjct: 488 SNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  +I   L E+ +KL   GY  +T  V  D+D+EEKE TL  HSEKLAIAFG++   P 
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + + ++KNLR+C+DCH   K IS+  DRE VVRD  RFHHFK G CSC D+W
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 223/498 (44%), Gaps = 114/498 (22%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  + F +N+++    +     +A+  +  M   ++     ++P   +A +    +F 
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-- 207
           GK  H      G+ SD++V++ LI MY+ CG L  ARK+FDE P  D+VSW S++ GY  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDL 154

Query: 208 ---------------VNADNVEEAKFI-----------YNKMP----------------- 224
                          V+ ++ ++A F+            +++P                 
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF 214

Query: 225 ERNIIASNSMIVLF--GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +R +   N+++  +  G +G VA A ++F ++  KD VS+++++S Y Q+ M  EA  +F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVF 274

Query: 283 MNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
             ++ ++V+  + + + +VL A ++   ++ G  +H   +++G+E  + +  ++I MY  
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG + TA K FD   N ++ SW +MI+GY   G   KA  LF AMI+             
Sbjct: 335 CGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS------------ 382

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYIRKNGLKIN 460
                              G+RP+  T VSV++AC+H  + ++  +W +A   + G+   
Sbjct: 383 -------------------GVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV--- 420

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                                       E G+  +  ++      G   K+ ++   MK 
Sbjct: 421 ----------------------------EPGLEHYGCMVDLLGRAGFLQKAYDLIQRMK- 451

Query: 521 SGVTPNEITFVGVLGACR 538
             + P+ I +  +L ACR
Sbjct: 452 --MKPDSIIWSSLLAACR 467



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 21/233 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN---YTYPLLA--QA 140
           KIF  +   +   +N++M  Y Q  +  +A  +++ ++ N V   N    +  LLA   +
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHS 300

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            ALR+    GK IHD V++ G + DV V  ++I+MY  CG +  ARK FD     ++ SW
Sbjct: 301 GALRI----GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSW 356

Query: 201 NSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
            +++AGY    +  +A  ++  M +     N I   S++      G   E  R F  M  
Sbjct: 357 TAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKG 416

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +      L  +  ++    +    ++A  L   M   ++  D ++  S+L+AC
Sbjct: 417 RFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAAC 466


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 88/770 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-- 142
           +K+F  +   N   +N+++ +       + A+  ++ ML+ NV   ++T   +  A +  
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 143 -LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +   +  GK +H + L+ G + + ++ NTL+ MY   G L++++ L       DLV+WN
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 202 SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
           ++L+     + + EA     +M      P+   I+S                        
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                     ++++ ++     V    R+F  M  + +  W+A+I+ Y QNE  +EAL+L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 282 FMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F+ M +   ++ +   +  V+ AC          ++H   VK G++    +QN L+ MYS
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYS 451

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             G+I  A +                               +F  M ++D+V+W+TMI+G
Sbjct: 452 RLGKIDIAMR-------------------------------IFGKMEDRDLVTWNTMITG 480

Query: 401 YAQHDQFSETLSLFMEMQHH-----------GIRPDEATLVSVISACTHLVALDQGKWIH 449
           Y   +   + L L  +MQ+             ++P+  TL++++ +C  L AL +GK IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           AY  KN L  +  +G+ L+DMY K GC+  + +VF    +K V +WN +I+ + M+G   
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           +++++   M   GV PNE+TF+ V  AC H G+VDEG R F  M  ++ +EP+S HY C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           VDLLGRAG +KEA +L+  MP   + A  W +LLGA + H + E+GE   + L++L+P+ 
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
              +VLL+NI++S G WD   EVR  M  +GV K PGCS IE    +H+F+AGD +HPQ 
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
            ++   L+ + ++++ EGY PDT  V  +++++EKE  L  HSEKLAIAFG++  SP   
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTI 840

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IR+ KNLR+CNDCH A KFIS+  DREI++RD  RFH FK+G+CSC D+W
Sbjct: 841 IRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 158/629 (25%), Positives = 291/629 (46%), Gaps = 108/629 (17%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES------------PNGFIFNT----- 101
           +A TF+   +  F + LLPF    + + + A   S            P+ FI  +     
Sbjct: 5   LAFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEW 64

Query: 102 ---MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
              ++R+ ++ N+ ++A+  Y  M+   +  DNY +P L +A A    +  GK IH HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 159 KAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-------- 209
           K G+  D V V NTL+N+Y  CGD  A  K+FD     + VSWNS+++   +        
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 210 -------ADNVEEAKFIY-------NKMP-------------------ERNIIASNSMIV 236
                   +NVE + F         + +P                   E N    N+++ 
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+ G +A +  L      +DLV+W+ ++S   QNE   EAL     M+   V  DE  
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAG 355
           + SVL AC++L +++ G  +HA A+K G ++    + +AL+ MY +C ++ +  ++FD  
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            +  +  WN+MI                               +GY+Q++   E L LF+
Sbjct: 365 FDRKIGLWNAMI-------------------------------AGYSQNEHDKEALLLFI 393

Query: 416 EMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+   G+  +  T+  V+ AC    A  + + IH ++ K GL  +  +  TL+DMY +L
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-----------KSGV 523
           G +D A+ +F   E++ + +WN +I G+  +   + +L +  +M+           +  +
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PN IT + +L +C  +  + +G +  ++   ++ L  +      +VD+  + G L+ + 
Sbjct: 514 KPNSITLMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ + +P   +V TW  ++ A   HG+ +
Sbjct: 573 KVFDQIPQK-NVITWNVIIMAYGMHGNGQ 600



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 56/298 (18%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F +   I   ++  GL  D F  + L+   + L    ++  + +IF  +E  +   +NT
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL---GKIDIAMRIFGKMEDRDLVTWNT 476

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGV-----------DNYTYPLLAQASALRLSVFEG 150
           M+  Y+     + A+ L   M N    V           ++ T   +  + A   ++ +G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH + +K    +DV V + L++MYA CG L  +RK+FD+ P  ++++WN I+  Y   
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 596

Query: 211 DNVEEA------------------------------------KFIYNKMPERNIIASNS- 233
            N +EA                                    +  Y   P+  +  S+  
Sbjct: 597 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 656

Query: 234 ---MIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMI 286
              ++ L GR G + EA +L   MP+      +WS+L+     +   E   +   N+I
Sbjct: 657 YACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 88/770 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-- 142
           +K+F  +   N   +N+++ +       + A+  ++ ML+ NV   ++T   +  A +  
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 143 -LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +   +  GK +H + L+ G + + ++ NTL+ MY   G L++++ L       DLV+WN
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 202 SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
           ++L+     + + EA     +M      P+   I+S                        
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                     ++++ ++     V    R+F  M  + +  W+A+I+ Y QNE  +EAL+L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 282 FMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F+ M +   ++ +   +  V+ AC          ++H   VK G++    +QN L+ MYS
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYS 451

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             G+I  A +                               +F  M ++D+V+W+TMI+G
Sbjct: 452 RLGKIDIAMR-------------------------------IFGKMEDRDLVTWNTMITG 480

Query: 401 YAQHDQFSETLSLFMEMQHH-----------GIRPDEATLVSVISACTHLVALDQGKWIH 449
           Y   +   + L L  +MQ+             ++P+  TL++++ +C  L AL +GK IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           AY  KN L  +  +G+ L+DMY K GC+  + +VF    +K V +WN +I+ + M+G   
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           +++++   M   GV PNE+TF+ V  AC H G+VDEG R F  M  ++ +EP+S HY C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           VDLLGRAG +KEA +L+  MP   + A  W +LLGA + H + E+GE   + L++L+P+ 
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
              +VLL+NI++S G WD   EVR  M  +GV K PGCS IE    +H+F+AGD +HPQ 
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
            ++   L+ + ++++ EGY PDT  V  +++++EKE  L  HSEKLAIAFG++  SP   
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTI 840

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IR+ KNLR+CNDCH A KFIS+  DREI++RD  RFH FK+G+CSC D+W
Sbjct: 841 IRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/629 (24%), Positives = 290/629 (46%), Gaps = 108/629 (17%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES------------PNGFIFNT----- 101
           +A TF+   +    + LLPF    + + + A   S            P+ FI  +     
Sbjct: 5   LAFTFSLPSIFPLPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEW 64

Query: 102 ---MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
              ++R+ ++ N+ ++A+  Y  M+   +  DNY +P L +A A    +  GK IH HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 159 KAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN-------- 209
           K G+  D V V NTL+N+Y  CGD  A  K+FD     + VSWNS+++   +        
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 210 -------ADNVEEAKFIY-------NKMP-------------------ERNIIASNSMIV 236
                   +NVE + F         + +P                   E N    N+++ 
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+ G +A +  L      +DLV+W+ ++S   QNE   EAL     M+   V  DE  
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAG 355
           + SVL AC++L +++ G  +HA A+K G ++    + +AL+ MY +C ++ +  ++FD  
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            +  +  WN+MI                               +GY+Q++   E L LF+
Sbjct: 365 FDRKIGLWNAMI-------------------------------AGYSQNEHDKEALLLFI 393

Query: 416 EMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+   G+  +  T+  V+ AC    A  + + IH ++ K GL  +  +  TL+DMY +L
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-----------KSGV 523
           G +D A+ +F   E++ + +WN +I G+  +   + +L +  +M+           +  +
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PN IT + +L +C  +  + +G +  ++   ++ L  +      +VD+  + G L+ + 
Sbjct: 514 KPNSITLMTILPSCAALSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ + +P   +V TW  ++ A   HG+ +
Sbjct: 573 KVFDQIPQK-NVITWNVIIMAYGMHGNGQ 600



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 56/298 (18%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F +   I   ++  GL  D F  + L+   + L    ++  + +IF  +E  +   +NT
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL---GKIDIAMRIFGKMEDRDLVTWNT 476

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGV-----------DNYTYPLLAQASALRLSVFEG 150
           M+  Y+     + A+ L   M N    V           ++ T   +  + A   ++ +G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH + +K    +DV V + L++MYA CG L  +RK+FD+ P  ++++WN I+  Y   
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 596

Query: 211 DNVEEA------------------------------------KFIYNKMPERNIIASNS- 233
            N +EA                                    +  Y   P+  +  S+  
Sbjct: 597 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 656

Query: 234 ---MIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMI 286
              ++ L GR G + EA +L   MP+      +WS+L+     +   E   +   N+I
Sbjct: 657 YACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/484 (45%), Positives = 310/484 (64%), Gaps = 1/484 (0%)

Query: 315  SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            S H  AV+ G     ++Q+ ++ MY++ G++ ++   F      D++   +M++     G
Sbjct: 1340 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 1399

Query: 375  SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             V+ AR LFD M ++D V+WS MI+GY    +  E L LF EM   G    EATLVSV++
Sbjct: 1400 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 1459

Query: 435  ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            AC  +  LD+GKW+H Y+R  G++++  LGT L+DMY K G V  A+EVF    E+ V +
Sbjct: 1460 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 1519

Query: 495  WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
            W + + G AMNG+  + L++F  M+ +G+ PN ++FV VL  C   GLVDEG   F+SM 
Sbjct: 1520 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM- 1578

Query: 555  QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             ++ ++P  +HYGCMVDL GRAG L +A   I  MPM P    WGALL A + H   ++G
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 1638

Query: 615  ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
            +    KL+ ++ ++D  HV LSNI+A    W  V  VRGMM  +GV K+PG S IE +G 
Sbjct: 1639 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGK 1698

Query: 675  IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
            +HEF  G R HP+ NEI+ ML EM ++L+L+GY  +T EV FDI++EEKE  +  HSEKL
Sbjct: 1699 VHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKL 1758

Query: 735  AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
            A+AFGLI +     IRI+KNLR+C DCH   K +S+ F+REIV+RDR+RFHHFK G CSC
Sbjct: 1759 ALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSC 1818

Query: 795  MDFW 798
             D+W
Sbjct: 1819 RDYW 1822



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 63/347 (18%)

Query: 154  HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
            H   ++ G  +D +V + +++MYA  GD++++R  F E    D                 
Sbjct: 1342 HGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPD----------------- 1384

Query: 214  EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                          ++   +M+      G+V  A  LF  MP++D V+WSA+I+ Y    
Sbjct: 1385 --------------VVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVG 1430

Query: 274  MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
               EAL+LF  M+     V E  +VSVL+ACA +  +  G  VH      G++  I L  
Sbjct: 1431 RSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGT 1490

Query: 334  ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
            AL+ MYS CG + TA ++F++    ++ +W S                            
Sbjct: 1491 ALVDMYSKCGAVVTAMEVFESMAERNVYTWTS---------------------------- 1522

Query: 394  WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                +SG A +   +E L LF  M+  GI+P+  + V+V+  C+    +D+G+     + 
Sbjct: 1523 ---AVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD 1579

Query: 454  KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            K G+         ++D+Y + G +D+A+   +    E     W AL+
Sbjct: 1580 KYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALL 1626



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 4/186 (2%)

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
            +F  +   +   ++ M+  Y+     ++A+ L+  ML+    V   T   +  A A   +
Sbjct: 1407 LFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGT 1466

Query: 147  VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            +  GK +H +V   G    + +   L++MY+ CG +  A ++F+     ++ +W S ++G
Sbjct: 1467 LDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSG 1526

Query: 207  YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR----KGNVAEACRLFKEMPKKDLVSW 262
                    E   ++ +M    I  +    V   R     G V E    F  M K  +  W
Sbjct: 1527 LAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPW 1586

Query: 263  SALISC 268
                 C
Sbjct: 1587 PEHYGC 1592


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/484 (46%), Positives = 306/484 (63%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           SVHA A++ G     ++Q+  + MY++ G++  A   F    + D++   +M+      G
Sbjct: 216 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 275

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
             + AR LFD M ++D V+W+ MI+GY    +  E L LF EM+H G    E TLVS ++
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L AL++GKW+H+     G++++  LGT LIDMY K G V  A+EVF    E+ V +
Sbjct: 336 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 395

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W + + G AMNG+    L +F  M+ +GV PN +TFV VL  C   GLVDEG   F+SM 
Sbjct: 396 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 455

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             H ++P  +HYGCMVDL GRAG L +A   I  MP+ P    WGALL A + H + E+G
Sbjct: 456 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 515

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           +    KL+ ++  +D  HVLLSNI+A    W  V  VR MM  +GV K+PGCS IE  G 
Sbjct: 516 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 575

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +HEF  G +THP+  EI+ ML EM ++L+L+GY  +T EV FDI++E+KE  +  HSEKL
Sbjct: 576 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 635

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           AIAFGL+ +     IRI+KNLR+C DCH   K IS+ F+REIV+RDR+RFHHFK G+CSC
Sbjct: 636 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 695

Query: 795 MDFW 798
            D+W
Sbjct: 696 KDYW 699



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 171/410 (41%), Gaps = 75/410 (18%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL------- 152
           N+++RA  +   P  A   ++ +    +  DNY++  L +A+    +     L       
Sbjct: 159 NSLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAG 215

Query: 153 -IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   L+ G   D +V +  ++MYA  GD+ AAR  F E    D+V   +++       
Sbjct: 216 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 275

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
             + A+                                LF  MP++D V+W+A+I+ Y  
Sbjct: 276 EADAAR-------------------------------ELFDGMPQRDHVAWNAMIAGYVH 304

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
                EAL LF  M      V EV +VS L+ACA L  ++ G  VH+ A   G+   + L
Sbjct: 305 TGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTL 364

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI MYS CG +  A ++FD+    ++ +W S                          
Sbjct: 365 GTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS-------------------------- 398

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                 +SG A +    + L+LF  M+  G+ P+  T V V+  C+    +D+G+     
Sbjct: 399 -----AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDS 453

Query: 452 IRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           ++ N G+         ++D+Y + G +D+A+   +G   E     W AL+
Sbjct: 454 MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALL 503



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E   + ++F  +   +   +N M+  Y+     ++A+ L+  M +    V   T      
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  GK +H      G    V +   LI+MY+ CG ++AA ++FD     ++ +
Sbjct: 336 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 395

Query: 200 WNSILAG 206
           W S ++G
Sbjct: 396 WTSAVSG 402


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 369/669 (55%), Gaps = 71/669 (10%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           N  LI  YA  G + +AR++FD+SP   + +WN+++  Y     + EA  +Y++M    +
Sbjct: 42  NAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGV 101

Query: 229 IASNS---------------------------------------MIVLFGRKGNVAEACR 249
              +S                                       ++ L+ + G + EA R
Sbjct: 102 RPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMR 161

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F +M ++DLV W+ +I+   QN    EA+ ++  M   RV  D VV++ ++ AC  L  
Sbjct: 162 VFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGH 221

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            K G S+H   ++  I   + +Q +L+ MY+                             
Sbjct: 222 SKMGLSIHGYMIRKDIIMDVIVQTSLVDMYA----------------------------- 252

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
             K G +E A  +F  M+ K+V+SWS +ISG+AQ+      L L ++MQ  G +PD  +L
Sbjct: 253 --KNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSL 310

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VSV+ AC+ +  L  GK +H YI +  L  + +  T +IDMY K G +  A  VF     
Sbjct: 311 VSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISF 369

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SWNA+I  + ++G  +++L +F +M+++ V P+  TF  +L A  H GLV++G   
Sbjct: 370 RDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYW 429

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F+ M+ E++++P+ KHY CMVDLL RAG ++EA+ELIESM   P +A W ALL  C  HG
Sbjct: 430 FSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHG 489

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
              +GE   +K++EL PD  G + L+SN  A+  RWD+V EVR +M + G+ K+PG S++
Sbjct: 490 KFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVM 549

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E NG +H FL  D++H Q  EI  +L ++  ++K  GY P T  V  ++++E KE  L  
Sbjct: 550 EVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCN 609

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSE+LAIAFGL+   P   + I KNLR+C DCH A KFIS+  +REIVVRD  RFHHFK 
Sbjct: 610 HSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKD 669

Query: 790 GSCSCMDFW 798
           G CSC D+W
Sbjct: 670 GVCSCGDYW 678



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 236/513 (46%), Gaps = 82/513 (15%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L+T L   +      +I + MILTG+     + ++LI+ S   L  IE +       F +
Sbjct: 10  LKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQ-SYARLGHIESARQ----VFDK 64

Query: 93  SPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           SP   +  +N M+ AY +R    +A+ LY  M +  V  D+ TY ++ +A    L +  G
Sbjct: 65  SPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSG 124

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           +      +  G+  DV+V   ++N+YA CG +  A ++FD+    DLV W +++ G    
Sbjct: 125 EETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQN 184

Query: 211 DNVEEAKFIYNKMPER---------------------------------------NIIAS 231
               EA  IY +M ++                                       ++I  
Sbjct: 185 GQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ 244

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S++ ++ + G++  A  +F+ M  K+++SWSALIS + QN     AL L ++M      
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYK 304

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEK 350
            D V +VSVL AC+ +  +K G SVH   V ++  +C  +   A+I MYS CG ++ A  
Sbjct: 305 PDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSS--TAVIDMYSKCGSLSFART 362

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD     D ISWN++I+ Y   GS E                               E 
Sbjct: 363 VFDQISFRDSISWNAIIASYGIHGSGE-------------------------------EA 391

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLID 469
           LSLF++M+   ++PD AT  S++SA +H   +++G+ W    + +  ++ +      ++D
Sbjct: 392 LSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVD 451

Query: 470 MYMKLGCVDNALEVFHG-TEEKGVSSWNALIIG 501
           +  + G V+ A E+      E G++ W AL+ G
Sbjct: 452 LLSRAGRVEEAQELIESMITEPGIAIWVALLSG 484



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 19/223 (8%)

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IHA +   G+  +      LI  Y +LG +++A +VF  + + GV +WNA+II ++  G 
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             ++L ++  M   GV P+  T+  VL AC     +  G   +   + +         YG
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQ--------GYG 137

Query: 568 -------CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
                   +++L  + G + EA  + + M    D+  W  ++    ++G       + R+
Sbjct: 138 DDVFVGAAVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMITGLAQNGQAREAVDIYRQ 196

Query: 621 LVELQPDHDGFHVLLSNIHA--SKGRWDDVLEVRGMMVRRGVV 661
           + + + + DG  V+L  I A  + G     L + G M+R+ ++
Sbjct: 197 MHKKRVEGDGV-VMLGLIQACTTLGHSKMGLSIHGYMIRKDII 238


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/770 (33%), Positives = 416/770 (54%), Gaps = 88/770 (11%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-- 142
           +K+F  +   N   +N+++ +       + A+  ++ ML+ NV   ++T   +  A +  
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 143 -LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +   +  GK +H + L+ G + + ++ NTL+ MY   G L++++ L       DLV+WN
Sbjct: 126 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184

Query: 202 SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
           ++L+     + + EA     +M      P+   I+S                        
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                     ++++ ++     V    R+F  M  + +  W+A+I+ Y QNE  +EAL+L
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 304

Query: 282 FMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F+ M +   ++ +   +  V+ AC          ++H   VK G++    +QN L+ MYS
Sbjct: 305 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYS 364

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             G+I  A +                               +F  M ++D+V+W+TMI+G
Sbjct: 365 RLGKIDIAMR-------------------------------IFGKMEDRDLVTWNTMITG 393

Query: 401 YAQHDQFSETLSLFMEMQHH-----------GIRPDEATLVSVISACTHLVALDQGKWIH 449
           Y   +   + L L  +MQ+             ++P+  TL++++ +C  L AL +GK IH
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           AY  KN L  +  +G+ L+DMY K GC+  + +VF    +K V +WN +I+ + M+G   
Sbjct: 454 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 513

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           +++++   M   GV PNE+TF+ V  AC H G+VDEG R F  M  ++ +EP+S HY C+
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 573

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDH 628
           VDLLGRAG +KEA +L+  MP   + A  W +LLGA + H + E+GE   + L++L+P+ 
Sbjct: 574 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 633

Query: 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQI 688
              +VLL+NI++S G WD   EVR  M  +GV K PGCS IE    +H+F+AGD +HPQ 
Sbjct: 634 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 693

Query: 689 NEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNP 748
            ++   L+ + ++++ EGY PDT  V  +++++EKE  L  HSEKLAIAFG++  SP   
Sbjct: 694 EKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTI 753

Query: 749 IRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IR+ KNLR+CNDCH A KFIS+  DREI++RD  RFH FK+G+CSC D+W
Sbjct: 754 IRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 252/538 (46%), Gaps = 88/538 (16%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD-VYVNNTLINMYAVCGDLSAARKL 188
           DNY +P L +A A    +  GK IH HV K G+  D V V NTL+N+Y  CGD  A  K+
Sbjct: 9   DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68

Query: 189 FDESPVLDLVSWNSILAGYVN---------------ADNVEEAKFIYNK---------MP 224
           FD     + VSWNS+++   +                +NVE + F             MP
Sbjct: 69  FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMP 128

Query: 225 ER-----------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
           E                  N    N+++ ++G+ G +A +  L      +DLV+W+ ++S
Sbjct: 129 EGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 188

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IE 326
              QNE   EAL     M+   V  DE  + SVL AC++L +++ G  +HA A+K G ++
Sbjct: 189 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 248

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               + +AL+ MY +C ++ +  ++FD   +  +  WN+MI                   
Sbjct: 249 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMI------------------- 289

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQG 445
                       +GY+Q++   E L LF+ M+   G+  +  T+  V+ AC    A  + 
Sbjct: 290 ------------AGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 337

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + IH ++ K GL  +  +  TL+DMY +LG +D A+ +F   E++ + +WN +I G+  +
Sbjct: 338 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 506 GLADKSLEMFSEMK-----------KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
              + +L +  +M+           +  + PN IT + +L +C  +  + +G +  ++  
Sbjct: 398 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYA 456

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            ++ L  +      +VD+  + G L+ + ++ + +P   +V TW  ++ A   HG+ +
Sbjct: 457 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 513



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 139/324 (42%), Gaps = 37/324 (11%)

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-YINLQNALIHMYSSCG 343
           MI   +  D     ++L A A+L  ++ G  +HA   K G     + + N L+++Y  CG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
           +     K+FD     + +SWNS+IS        E A   F  M++++V            
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV------------ 108

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV---ALDQGKWIHAYIRKNGLKIN 460
                               P   TLVSV++AC++L     L  GK +HAY  + G ++N
Sbjct: 109 -------------------EPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 148

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
           S +  TL+ MY KLG + ++  +      + + +WN ++     N    ++LE   EM  
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            GV P+E T   VL AC H+ ++  G       ++   L+ NS     +VD+      + 
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 268

Query: 581 EAEELIESMPMSPDVATWGALLGA 604
               + + M     +  W A++  
Sbjct: 269 SGRRVFDGM-FDRKIGLWNAMIAG 291



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDN 479
           GI+PD     +++ A   L  ++ GK IHA++ K G  ++S+ +  TL+++Y K G    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
             +VF    E+   SWN+LI         + +LE F  M    V P+  T V V+ AC +
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 540 M----GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           +    GL+     H   +    + E NS     +V + G+ G L  ++ L+ S     D+
Sbjct: 125 LPMPEGLMMGKQVHAYGL---RKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDL 180

Query: 596 ATWGALLGA-CKKHGDHEMGERVGRKLVE-LQPD 627
            TW  +L + C+     E  E +   ++E ++PD
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 56/278 (20%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F +   I   ++  GL  D F  + L+   + L    ++  + +IF  +E  +   +NT
Sbjct: 333 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL---GKIDIAMRIFGKMEDRDLVTWNT 389

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGV-----------DNYTYPLLAQASALRLSVFEG 150
           M+  Y+     + A+ L   M N    V           ++ T   +  + A   ++ +G
Sbjct: 390 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 449

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH + +K    +DV V + L++MYA CG L  +RK+FD+ P  ++++WN I+  Y   
Sbjct: 450 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 509

Query: 211 DNVEEA------------------------------------KFIYNKMPERNIIASNS- 233
            N +EA                                    +  Y   P+  +  S+  
Sbjct: 510 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 569

Query: 234 ---MIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALI 266
              ++ L GR G + EA +L   MP+      +WS+L+
Sbjct: 570 YACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 607


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/573 (41%), Positives = 355/573 (61%), Gaps = 36/573 (6%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N++A+ ++     + G++  AC +F ++ +     ++ +I     +   EEAL+L+++MI
Sbjct: 35  NLVATCALT----KWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMI 90

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  D+     VL AC+ L VV  G  VH    K+G+E                    
Sbjct: 91  ERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEG------------------- 131

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                       D+I  NS+I+ Y KCG ++ A  +F+ M EK V SWS +I  +A  + 
Sbjct: 132 ------------DVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEM 179

Query: 407 FSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           ++E L L  +M   G  R +E+TLV+V+SACTHL + D GK IH  + +N  ++N ++ T
Sbjct: 180 WNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKT 239

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +LIDMY+K GC++  L VF    EK   S+  +I G A++G   ++L++FSEM + G+ P
Sbjct: 240 SLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAP 299

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++ +VGV  AC H GLV+EG + F SM  EH++EP  +HYGCMVDLLGR GMLKEA EL
Sbjct: 300 DDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYEL 359

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I+SM + P+   W +LL ACK H + E+G+     L  L  ++ G +++L+N++A   +W
Sbjct: 360 IKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKW 419

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           DDV ++R  +  R +V+ PG S+IEA   +++F++ D++ PQ N I  M+ +M  +LK E
Sbjct: 420 DDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFE 479

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT +V  D+D EEK+  L  HS+KLAIAFGLI  S  +P+RI +NLR+C+DCHT  
Sbjct: 480 GYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYT 539

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K+IS  ++REI VRDR RFHHFK+GSCSC D+W
Sbjct: 540 KYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 156/329 (47%), Gaps = 52/329 (15%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           ++F Q+ + ++  G+  DTF  S L+  +  L  +  M Y+  IF  ++ P+ F +NTM+
Sbjct: 12  EEFKQVHAHVLKCGIFFDTFCMSNLVA-TCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           R  +     ++A+ LY  M+   V  D +TYP + +A +L   V EG  +H HV K G +
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            DV V N+LINMY  CG++  A  +F+      + SW++I+  +   +   E   +  KM
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 224 ----------------------------------------PERNIIASNSMIVLFGRKGN 243
                                                    E N++   S+I ++ + G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           + +  R+FK M +K+  S++ +IS    +   +EAL +F  MI+  +  D+VV V V SA
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQ 332
           C+           HA  V+ G++C+ ++Q
Sbjct: 311 CS-----------HAGLVEEGLQCFKSMQ 328



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 149/339 (43%), Gaps = 73/339 (21%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNSILAG 206
           E K +H HVLK G   D +  + L+   A+   G +  A  +F +        +N+++ G
Sbjct: 13  EFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRG 72

Query: 207 YVNADNVEEAKFIYNKMPER---------------------------------------N 227
            VN   +EEA  +Y  M ER                                       +
Sbjct: 73  NVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGD 132

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI- 286
           +I  NS+I ++G+ G +  AC +F  M +K + SWSA+I  +   EM+ E L+L   M  
Sbjct: 133 VIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSS 192

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           + R  V+E  +V+VLSAC +L     G  +H + ++   E  + ++ +LI M        
Sbjct: 193 EGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDM-------- 244

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                  Y+K G +EK   +F  M EK+  S++ MISG A H +
Sbjct: 245 -----------------------YVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGR 281

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
             E L +F EM   G+ PD+   V V SAC+H   +++G
Sbjct: 282 GKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEG 320


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/553 (41%), Positives = 337/553 (60%), Gaps = 32/553 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACA 305
           A ++F ++   ++ +W+ +I  + ++E    A+ LF  M     ++ D      +  A A
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L  V  G  +H++ V+ G +    +QN+L+HMYS  G                      
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLG---------------------- 185

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
                    S+  A  +F+ M  +D V+W+++I+G+A +   +E L+L+ EM   G+ PD
Sbjct: 186 ---------SLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T+VS++SAC  L AL  G+ +H Y+ K GL  N      L+D+Y K G   +A +VF 
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             EE+ V SW +LI+G A+NGL +++L++F E+++ G+ P+EITFVGVL AC H G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F  M +E+ + P  +H+GCMVDLL RAG + +A + I +MP+ P+   W  LLGAC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
             HG  E+GE    ++  L+  H G  VLLSN++AS+ RW DV  VR +M+ +GV K PG
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S++E    ++EF+ GDR+HPQ  E   ML ++ + LK+EGY P T+ V  DI++EEKET
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKET 536

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  H+EK+AIAF L+   P  PIRIMKNLR+C DCH A K IS+ F+REI+VRDR RFH
Sbjct: 537 ALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFH 596

Query: 786 HFKHGSCSCMDFW 798
           HFK GSCSC D+W
Sbjct: 597 HFKDGSCSCKDYW 609



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 171/349 (48%), Gaps = 53/349 (15%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLAQ 139
           MS++ +IF  +++PN F +NTM+R + +   P  A+ L+  M   +++  D +T+P L +
Sbjct: 85  MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A  + V  G+ IH  V++ GFDS  +V N+L++MY+V G L +A ++F+     D V+
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVA 204

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PE---------------------------- 225
           WNS++ G+       EA  +Y +M      P+                            
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV 264

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                +N  ASN+++ L+ + GN  +A ++F EM ++ +VSW++LI     N +  EAL 
Sbjct: 265 KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALK 324

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           LF  +    +   E+  V VL AC++  ++  G +    +  + GI   I     ++ + 
Sbjct: 325 LFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLL 384

Query: 340 SSCGEITTAEKLFDAGHNLDL----ISWNSM-----ISGYLKCGSVEKA 379
              G++  A   +D   N+ +    + W ++     I G+L+ G V +A
Sbjct: 385 CRAGKVGDA---YDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARA 430



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 141/311 (45%), Gaps = 71/311 (22%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-------PE-- 225
           + ++   +S A ++F++    ++ +WN+++ G+  ++N   A  ++++M       P+  
Sbjct: 78  LVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTH 137

Query: 226 --------------------------RNIIAS-----NSMIVLFGRKGNVAEACRLFKEM 254
                                     RN   S     NS++ ++   G++  A ++F+ M
Sbjct: 138 TFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIM 197

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +D V+W+++I+ +  N M  EAL L+  M    V  D   +VS+LSAC  L  +  G 
Sbjct: 198 SYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGE 257

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            VH   VK+G+    +  NAL+ +YS CG    A+K+FD      ++SW S+I G     
Sbjct: 258 RVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL---- 313

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                  ++G       +E L LF E++  G++P E T V V+ 
Sbjct: 314 ----------------------AVNGLG-----NEALKLFGELERQGLKPSEITFVGVLY 346

Query: 435 ACTHLVALDQG 445
           AC+H   LD+G
Sbjct: 347 ACSHCGMLDEG 357


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 363/621 (58%), Gaps = 42/621 (6%)

Query: 179 CGDLSAARKLFDESPVLDLVSW-NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
           CG L   R L+  S +L+  ++   +  G     +++ + F      E +++  N ++ +
Sbjct: 98  CGSLEPERTLY--SKMLNKCTYLRKLKQGRAIHAHIQSSTF------EDDLVLLNFILNM 149

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++ EA  LF +MP KD+VSW+ LIS Y Q+    EAL LF  M+      +E  +
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+L A         G  +HA ++K G +  +++ ++L+ MY+                 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYAR---------------- 253

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                W  M           +A+ +F+++  K+VVSW+ +I+G+A+  +    + LF +M
Sbjct: 254 -----WAHM----------REAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM 298

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              G  P   T  SV+ AC    +L+QGKW+HA++ K+G +  + +G TLIDMY K G +
Sbjct: 299 LRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 357

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            +A +VF    ++ + SWN++I G+A +GL  ++L++F +M K+ V PNEITF+ VL AC
Sbjct: 358 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 417

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GL+DEG  +F  ++++H++E    H+  +VDLLGRAG L EA + IE MP+ P  A 
Sbjct: 418 SHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 476

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           WGALLGAC+ H + ++G     ++ EL P   G HVLLSNI+AS GR  D  +VR MM  
Sbjct: 477 WGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 536

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
            GV K P CS +E    +H F+A D +HP   EI  M ++++ K+K  GY PDT  V F 
Sbjct: 537 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 596

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           ++Q+++E  L  HSEKLA+AF ++   P   IRI KN+RIC DCH+A KF SR   REI+
Sbjct: 597 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 656

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD +RFHHF HG CSC D+W
Sbjct: 657 VRDTNRFHHFLHGMCSCRDYW 677



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 38/293 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  ++  Y Q     +A+ L+  ML+     + +T   L +AS    S   G+ +H   L
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSL 233

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA-------- 210
           K G+D +V+V ++L++MYA    +  A+ +F+     ++VSWN+++AG+           
Sbjct: 234 KYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMR 293

Query: 211 -------DNVEEAKFIYN--------------KMPERNIIAS---------NSMIVLFGR 240
                     E   F Y+              K    ++I S         N++I ++ +
Sbjct: 294 LFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAK 353

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G++ +A ++F+ + K+D+VSW+++IS Y Q+ +  EAL LF  M+  +V  +E+  +SV
Sbjct: 354 SGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSV 413

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           L+AC++  ++  G     L  K  IE  +     ++ +    G +  A K  +
Sbjct: 414 LTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIE 466



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 43/221 (19%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRL 145
           IF  L + N   +N ++  + ++   +  + L+  ML       ++TY  +LA AS+  L
Sbjct: 263 IFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSL 322

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
              +GK +H HV+K+G     Y+ NTLI+MYA  G +  A+K+F      D+VSWNSI++
Sbjct: 323 E--QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 380

Query: 206 GYV-----------------------------------NADNVEEAKFIYNKMPERNI-- 228
           GY                                    ++  ++E ++ +  M +  I  
Sbjct: 381 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEA 440

Query: 229 -IASNSMIV-LFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
            +A +  +V L GR G + EA +  +EMP K   + W AL+
Sbjct: 441 QVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L   +   +N+++  Y Q  +  +A+ L++ ML   V  +  T+  +  A +   
Sbjct: 362 KVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSG 421

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS-WNSIL 204
            + EG+   + + K   ++ V  + T++++    G L+ A K  +E P+    + W ++L
Sbjct: 422 LLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVL------FGRKGNVAEACRLFKE--MPK 256
                  N++   +   ++ E +   S   ++L       GR  + A+  ++ KE  + K
Sbjct: 482 GACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 541

Query: 257 KDLVSW 262
           +   SW
Sbjct: 542 EPACSW 547


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/603 (39%), Positives = 355/603 (58%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           ++S++       ++++A+ I+  +       S    NS+I L+ + G VA+A R+F  MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +D+ SW++LI+ Y QN+M +EAL L   M+  R   +     S+L A         G  
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HAL VK      + + +AL+ MY+                               +CG 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYA-------------------------------RCGR 215

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +I+G+A+      TL +F EMQ +G      T  SV SA
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              + AL+QGKW+HA++ K+G ++++ +G T++DMY K G + +A +VF   ++K V +W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N+++  FA  GL  +++  F EM+K GV  N+ITF+ +L AC H GLV EG ++F+ M++
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMK 394

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP   HY  +VDLLGRAG+L +A   I  MPM P  A WGALLG+C+ H + ++G+
Sbjct: 395 EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQ 454

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + EL PD  G  VLL NI+AS G+WD    VR MM   GV K P CS +E    +
Sbjct: 455 FAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 514

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI    +E++ +++  GY P+T  V   +D++E++  L  HSEK+A
Sbjct: 515 HMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIA 574

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A ++IS+ F REIVVRD +RFHHF  GSCSC 
Sbjct: 575 LAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCG 634

Query: 796 DFW 798
           D+W
Sbjct: 635 DYW 637



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 181/406 (44%), Gaps = 71/406 (17%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  L  A A   S+ + + IH H+  + F   V+++N+LI++Y  CG ++ AR++FD  P
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 194 VLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP------------------- 224
             D+ SW S++AGY   D  +EA          +F  N                      
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 225 ----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALI+ + +   
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            E  L++F  M  +          SV SA A +  ++ G  VHA  +K G      + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           ++ MY+  G +  A K+FD     D+++WNS                             
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNS----------------------------- 337

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
             M++ +AQ+    E ++ F EM+  G+  ++ T +S+++AC+H   + +GK     +++
Sbjct: 338 --MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALI 499
             L+       T++D+  + G +++AL  +F    +   + W AL+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 145/302 (48%), Gaps = 39/302 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + + +   + +++  Y Q ++P +A+ L   ML      + +T+  L +A+    
Sbjct: 120 RVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASA 179

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S   G+ IH   +K  +  DVYV + L++MYA CG +  A  +FD+    + VSWN+++A
Sbjct: 180 SSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA 239

Query: 206 GYVNADN-----------------------------------VEEAKFIYNKM---PER- 226
           G+    +                                   +E+ K+++  M    ER 
Sbjct: 240 GFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERL 299

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +    N+++ ++ + G++ +A ++F  + KKD+V+W+++++ + Q  +  EA+  F  M 
Sbjct: 300 SAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMR 359

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V ++++  +S+L+AC++  +VK G     +  +  +E  I+    ++ +    G + 
Sbjct: 360 KCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLN 419

Query: 347 TA 348
            A
Sbjct: 420 DA 421



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  +  +F  LES NG  +N ++  + ++   +  + ++  M  N     ++TY  +  
Sbjct: 215 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 274

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +GK +H H++K+G     +V NT+++MYA  G +  ARK+FD     D+V+
Sbjct: 275 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVT 334

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           WNS+L  +       EA   + +M +     N I   S++      G V E  + F  M 
Sbjct: 335 WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK 394

Query: 256 KKDL 259
           + +L
Sbjct: 395 EYNL 398


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/805 (32%), Positives = 422/805 (52%), Gaps = 75/805 (9%)

Query: 31   SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
            S+L+   +K +S +   ++ S +I  G+  D    ++L+    +    ++     KIF  
Sbjct: 374  SVLQLCAEK-KSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQ---GRKIFDK 429

Query: 91   LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
            + +   F++N +M  Y +    ++++ L+K M    V  + YT+  + +  A    V E 
Sbjct: 430  IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489

Query: 151  KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG---- 206
            K +H +VLK GF S+  V N+LI  Y   G + +A  LFDE    D+VSWNS++ G    
Sbjct: 490  KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 549

Query: 207  -------------------------------YVNADNVEEAK----FIYNKMPERNIIAS 231
                                           + N  N+   +    F         ++ S
Sbjct: 550  GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFS 609

Query: 232  NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            N+++ ++ + GN+  A  +F +M    +VSW++ I+ Y +  +Y +A+ LF  M    V 
Sbjct: 610  NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVR 669

Query: 292  VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             D   V S++ ACA  + +  G  VH+  +K G+   + + NALI+MY+ CG +  A  +
Sbjct: 670  PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 729

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
            F      D++SWN+M                               I GY+Q+   +E L
Sbjct: 730  FSKIPVKDIVSWNTM-------------------------------IGGYSQNSLPNEAL 758

Query: 412  SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
             LF++MQ    +PD+ T+  V+ AC  L ALD+G+ IH +I + G   +  +   L+DMY
Sbjct: 759  ELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 817

Query: 472  MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
             K G +  A  +F    +K + SW  +I G+ M+G  ++++  F+EM+ +G+ P+E +F 
Sbjct: 818  AKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 877

Query: 532  GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
             +L AC H GL++EG + FNSM  E  +EP  +HY C+VDLL R G L +A + IESMP+
Sbjct: 878  VILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPI 937

Query: 592  SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             PD   WG LL  C+ H D ++ E+V   + EL+PD+  ++V+L+N++A   +W++V ++
Sbjct: 938  KPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKL 997

Query: 652  RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
            R  M +RG  + PGCS IE  G  + F+AG+  HPQ   ID +L ++  +++ E Y    
Sbjct: 998  RKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMF 1057

Query: 712  LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
              V  + D  EKE     HSEK A+AFG++ + P   +R+ KN R+C DCH   KF+S+ 
Sbjct: 1058 RYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKT 1117

Query: 772  FDREIVVRDRHRFHHFKHGSCSCMD 796
              REIV+RD +RFHHFK G CSC D
Sbjct: 1118 TKREIVLRDSNRFHHFKDGLCSCRD 1142


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/540 (44%), Positives = 338/540 (62%), Gaps = 39/540 (7%)

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALA 320
           W+ +I  Y +++   EA+VL+M+MI   +   +      +L++CA L+ ++ G  VH+  
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           +K G E  + ++NALIH+YS  G             NL+L                  AR
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFG-------------NLNL------------------AR 90

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            LFD  + +D+VS++TMI GYA+ +Q    L LF EMQ+     DE TLV+V+SAC  L 
Sbjct: 91  TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQN----SDEVTLVAVLSACARLG 146

Query: 441 ALDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNA 497
           A D GK + H YI       N+IL   ++DMY K G +D+ALE+F   G   K    +N+
Sbjct: 147 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 206

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G A +GL + ++ +F E+  +G+ P+E+TFVGVL AC H GL++EG + F SM   +
Sbjct: 207 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 266

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            ++P  +HYGCMVDLLGR G L+EA +L++ MP   +   W ALL AC+ HG+ ++GE  
Sbjct: 267 GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIA 326

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
           G+KL+E++  H   +VLLSNI A   +W++  +VR +M   G+ K PG S IE  G IH 
Sbjct: 327 GQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHR 386

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F+A D++HPQ  EI+ ML +MA +LK  GY P+T +V FDID+EEKE+ +  HSEKLA+A
Sbjct: 387 FVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALA 446

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           FGL+  SP + IRI+KNLRIC DCH A K +S  + REI VRD  RFHHF++GSCSCMDF
Sbjct: 447 FGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 201/421 (47%), Gaps = 65/421 (15%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFE-GKLIHD 155
           ++NTM+R Y + + P++AI LY  M+   +   +N+T+P L  + A RLS  E G  +H 
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA-RLSSLEPGHEVHS 59

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           H++K GF+SD++V N LI++Y+V G+L+ AR LFDES V DLVS+N+++ GY   +  E 
Sbjct: 60  HIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 119

Query: 216 A------------------------------------KFIYNKMPERNIIASNSMIVLFG 239
           A                                    ++I N +  +N I + +++ ++ 
Sbjct: 120 ALCLFGEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYA 179

Query: 240 RKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + G++  A  +F+ + K  K    ++++I+   Q+ + E A+ +F  +I   +  DEV  
Sbjct: 180 KCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTF 239

Query: 298 VSVLSACANLTVVKAGTSV-----HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           V VL AC +  +++ G  +     +A  +K  +E Y  + + L       G     E+ +
Sbjct: 240 VGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLL-------GRYGCLEEAY 292

Query: 353 DAGHNLDL----ISWNSMISGYLKCGSVEKARALFDAMIEKDV---VSWSTMISGYAQHD 405
           D    +      + W +++S     G+V+        ++E +      +  + +  A  +
Sbjct: 293 DLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADAN 352

Query: 406 QFSETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALD----QGKWIHAYIRKNGLKIN 460
           Q+ E   +   M+ HGIR P   + + +  A    VA D    QGK I   ++   +++ 
Sbjct: 353 QWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLK 412

Query: 461 S 461
           S
Sbjct: 413 S 413


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 333/567 (58%), Gaps = 31/567 (5%)

Query: 232  NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             S++ L+ + G +  A R+F EMP    V W+ALI+ Y       EA+ +  N   + + 
Sbjct: 589  TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 648

Query: 292  VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             D    V VL+ACA +  +  G +V   A + G+                      A+ +
Sbjct: 649  PDSFTAVRVLTACARIADLATGETVWRAAEQEGV----------------------AQSV 686

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
            F A   +DL         Y+KCG + KAR +FD M  KD V+W  M+ GYA +    E L
Sbjct: 687  FVATAAVDL---------YVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREAL 737

Query: 412  SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
             LF+ MQ  G++PD   +   +SACT L ALD G+     +  +    N +LGT LIDMY
Sbjct: 738  DLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMY 797

Query: 472  MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
             K G    A  VF    +K +  WNA+I+G  M G    +  +  +M+KSGV  N+ TF+
Sbjct: 798  AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 857

Query: 532  GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            G+L +C H GL+ +G R+F++M + + + P  +HYGCMVDLL RAG+L+EA +L++ MPM
Sbjct: 858  GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 917

Query: 592  SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
              +    GALLG CK H + E+ E V ++L+ L+P + G +V+LSNI++++GRW+D  ++
Sbjct: 918  PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 977

Query: 652  RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
            R  M  +GV K+P CS +E  G +HEF  GD++HP  ++I   LDE+  ++K  GY P T
Sbjct: 978  RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 1037

Query: 712  LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
              V FD++ EEKE TL  HSEKLAIAF L+   P   IR+ KNLR+C+DCHTA K +SR 
Sbjct: 1038 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 1097

Query: 772  FDREIVVRDRHRFHHFKHGSCSCMDFW 798
              REI+VRD +RFH F+ GSCSC D+W
Sbjct: 1098 THREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 149/356 (41%), Gaps = 75/356 (21%)

Query: 133 TYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           T P+ L  AS L   +  G+ +H   LK    ++ +V  +L+++YA CG L  A+++FDE
Sbjct: 551 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 610

Query: 192 SPVLDLVSWNSILAGYVNADNVEEA------KFIYNKMPE-------------------- 225
            P    V W +++  Y++A ++ EA       F     P+                    
Sbjct: 611 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 670

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                        +++  + + + L+ + G +A+A  +F +M  KD V+W A++  Y  N
Sbjct: 671 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 730

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF+ M    +  D   V   LSAC  L  +  G    A+ +    E   N  
Sbjct: 731 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR--QAIRMVDWDEFLDNPV 788

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  ALI MY+ CG    A  +F      D+I WN+MI G                     
Sbjct: 789 LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL-------------------- 828

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                    G   H++ +   +L  +M+  G++ ++ T + ++ +CTH   +  G+
Sbjct: 829 ---------GMTGHEKIA--FALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 873



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/385 (18%), Positives = 166/385 (43%), Gaps = 52/385 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  ++ AY+     ++A+ + +    N +  D++T   +  A A   
Sbjct: 606 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +     + G    V+V    +++Y  CG+++ AR++FD+    D V+W +++ 
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 725

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY +  +  EA  ++  M                                          
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 785

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N +   ++I ++ + G+  EA  +F++M KKD++ W+A+I         + A  L   M 
Sbjct: 786 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME 845

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V +++   + +L +C +  +++ G    H +     I   I     ++ + S  G +
Sbjct: 846 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLL 905

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMIEKDVV--SWST----MI 398
             A +L D   ++ + + N++I G L  G  + +   L + ++++ ++   W++    M+
Sbjct: 906 QEAHQLVD---DMPMPA-NAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVML 961

Query: 399 SG-YAQHDQFSETLSLFMEMQHHGI 422
           S  Y+   ++ +   L ++M+  G+
Sbjct: 962 SNIYSNRGRWEDAAKLRLDMKAKGV 986



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L  G+ +HA   K     N  + T+L+ +Y K G +  A  VF          W ALI  
Sbjct: 566 LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 625

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +   G   +++ +      +G+ P+  T V VL AC  +  +  G   + +  QE  +  
Sbjct: 626 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEG-VAQ 684

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +       VDL  + G + +A E+ + M    D   WGA++G    +G
Sbjct: 685 SVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVAWGAMVGGYASNG 731


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/692 (37%), Positives = 379/692 (54%), Gaps = 79/692 (11%)

Query: 156 HVLKAGFDSDVYVN----NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           H  +  FD   Y N    NTLIN YA    +  AR++FDE P  D+VS+N+++A Y +  
Sbjct: 61  HNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRG 120

Query: 212 NVEEAKFIYNKMPERN-----------IIA--------------------------SNSM 234
               A  ++ ++ E             IIA                          +N++
Sbjct: 121 ECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAV 180

Query: 235 IVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           +  + RKG + EA R+F+EM +   +D VSW+A+I    Q+    EA+ LF  M+   + 
Sbjct: 181 LACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLK 240

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           VD   + SVL+A   +  +  G   H + +K G     ++ + LI +YS C         
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCA-------- 292

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET- 410
                                 G + + R +F+ +   D+V W+TMISG++Q++  SE  
Sbjct: 293 ----------------------GGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDG 330

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLID 469
           +  F EMQH+G  PD+ + V V SAC++L +   GK +HA   K+ +  N + +   L+ 
Sbjct: 331 IWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVA 390

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G V +A  VF    E  + S N++I G+A +G+  +SL +F  M +  + PN IT
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTIT 450

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+ VL AC H G V+EG ++FN M +  R+EP ++HY CM+DLLGRAG LKEAE +IE+M
Sbjct: 451 FIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P +P    W  LLGAC+KHG+ E+  +   + ++L+P +   +V+LSN++AS  RW++  
Sbjct: 511 PFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAA 570

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            V+ +M  RGV K PGCS IE +  +H F+A D +HP I EI   + E+ +K+K  GY P
Sbjct: 571 TVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVP 630

Query: 710 D---TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           D    L    +++ +EKE  L  HSEKLA+AFGLI+     PI ++KNLRIC DCH A K
Sbjct: 631 DIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIK 690

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS    REI VRD HRFH FK G CSC D+W
Sbjct: 691 LISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 218/487 (44%), Gaps = 80/487 (16%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+  L +A   +  +  GK +H    K+      Y++N    +Y+ CG L  A+  FD +
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
              ++ S+N+++  Y                      A +S+I L         A ++F 
Sbjct: 71  QYPNVFSYNTLINAY----------------------AKHSLIHL---------ARQVFD 99

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA-NLTVVK 311
           E+P+ D+VS++ LI+ Y        AL LF  + + R  +D   +  V+ AC  ++ +V+
Sbjct: 100 EIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVR 159

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF---DAGHNLDLISWNSMIS 368
               +H   V  G +CY ++ NA++  YS  G +  A ++F     G   D +SWN+MI 
Sbjct: 160 ---QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMI- 215

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
             + CG                            QH +  E + LF EM   G++ D  T
Sbjct: 216 --VACG----------------------------QHREGLEAVELFREMVRRGLKVDMFT 245

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-GCVDNALEVFHGT 487
           + SV++A T +  L  G   H  + K+G   NS +G+ LID+Y K  G +    +VF   
Sbjct: 246 MASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEI 305

Query: 488 EEKGVSSWNALIIGFAM-NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
               +  WN +I GF+    L++  +  F EM+ +G  P++ +FV V  AC ++     G
Sbjct: 306 AAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG 365

Query: 547 HR----HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
            +       S I  +R+  N+     +V +  + G + +A  + ++MP   ++ +  +++
Sbjct: 366 KQVHALAIKSDIPYNRVSVNNA----LVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMI 420

Query: 603 GACKKHG 609
               +HG
Sbjct: 421 AGYAQHG 427



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 18/341 (5%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++L AC     +  G ++HAL  K  I     L N    +YS CG +  A+  FD     
Sbjct: 14  NLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYP 73

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++ S+N++I+ Y K   +  AR +FD + + D+VS++T+I+ YA   +    L LF E++
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
                 D  TL  VI AC   V L   + +H ++   G    + +   ++  Y + G ++
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLN 191

Query: 479 NALEVFHGTEEKGVS---SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            A  VF    E G     SWNA+I+    +    +++E+F EM + G+  +  T   VL 
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLT 251

Query: 536 ACRHMGLVDE--GHRHFNSMIQEHRLEPNSKHYGCMVDLLGR-AGMLKEAEELIESMPMS 592
           A      V +  G   F+ M+ +     NS     ++DL  + AG + E  ++ E +  +
Sbjct: 252 A---FTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA-A 307

Query: 593 PDVATWGALLGACKKHGD-HEMGERVGRKLVELQPDHDGFH 632
           PD+  W  ++    ++ D  E G    R++      H+GFH
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREM-----QHNGFH 343


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/708 (35%), Positives = 385/708 (54%), Gaps = 39/708 (5%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++N M+  +   N    AI L+  M +     DN+T+  +    AL ++  E + +  H 
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLAL-VADDEKQCVQFHA 173

Query: 158 --LKAGFDSDVYVNNTLINMYAVCGD----LSAARKLFDESPVLDLVSWNSILAGYVNAD 211
             LK+G      V+N L+++Y+ C      L +ARK+FDE    D  SW +++ GYV   
Sbjct: 174 AALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV--- 230

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                K  Y  + E          +L G   N+              LV+++A+IS Y  
Sbjct: 231 -----KNGYFDLGEE---------LLEGMDDNM-------------KLVAYNAMISGYVN 263

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
              Y+EAL +   M+   + +DE    SV+ ACA   +++ G  VHA  ++   +   + 
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHF 322

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            N+L+ +Y  CG+   A  +F+     DL+SWN+++SGY+  G + +A+ +F  M EK++
Sbjct: 323 DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           +SW  MISG A++    E L LF  M+  G  P +      I +C  L A   G+  HA 
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQ 442

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + K G   +   G  LI MY K G V+ A +VF         SWNALI     +G   ++
Sbjct: 443 LLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEA 502

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           ++++ EM K G+ P+ IT + VL AC H GLVD+G ++F+SM   +R+ P + HY  ++D
Sbjct: 503 VDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLID 562

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LL R+G   +AE +IES+P  P    W ALL  C+ HG+ E+G     KL  L P+HDG 
Sbjct: 563 LLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGT 622

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           ++LLSN+HA+ G+W++V  VR +M  RGV K   CS IE    +H FL  D +HP+   +
Sbjct: 623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAV 682

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQE-EKETTLFRHSEKLAIAFGLITISPPNPIR 750
              L ++ K+++  GY PDT  V  D++ +  KE  L  HSEK+A+AFGL+ + P   IR
Sbjct: 683 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 742

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR C DCH   +F+S    R+I++RDR RFHHF++G CSC +FW
Sbjct: 743 IFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 227/507 (44%), Gaps = 77/507 (15%)

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           R S+   + +H +++  GF    ++ N LI++Y    +L+ AR+LFDE    D ++  ++
Sbjct: 27  RTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTM 86

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           ++GY  + ++  A+ ++ K P                             +  +D V ++
Sbjct: 87  VSGYCASGDITLARGVFEKAP-----------------------------VCMRDTVMYN 117

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV----KAGTSVHAL 319
           A+I+ +  N     A+ LF  M       D     SVL   A L +V    K     HA 
Sbjct: 118 AMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL---AGLALVADDEKQCVQFHAA 174

Query: 320 AVKIGIECYINLQNALIHMYSSCGE----ITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           A+K G     ++ NAL+ +YS C      + +A K+FD     D  SW +M++GY+K G 
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234

Query: 376 VEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            +    L + M +   +V+++ MISGY     + E L +   M   GI  DE T  SVI 
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIR 294

Query: 435 ACTHLVALDQGKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           AC     L  GK +HAY+ R+     +     +L+ +Y K G  D A  +F     K + 
Sbjct: 295 ACATAGLLQLGKQVHAYVLRREDFSFH--FDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352

Query: 494 SWNALIIGF-------------------------------AMNGLADKSLEMFSEMKKSG 522
           SWNAL+ G+                               A NG  ++ L++FS MK+ G
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
             P +  F G + +C  +G    G + +++ + +   + +      ++ +  + G+++EA
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNG-QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEA 471

Query: 583 EELIESMPMSPDVATWGALLGACKKHG 609
            ++  +MP   D  +W AL+ A  +HG
Sbjct: 472 RQVFRTMP-CLDSVSWNALIAALGQHG 497



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  ++  N   +  M+    +    ++ + L+  M        +Y +    ++ A+  +
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+  H  +LK GFDS +   N LI MYA CG +  AR++F   P LD VSWN+++A 
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492

Query: 207 YVNADNVEEAKFIYNKMPERNI 228
                +  EA  +Y +M ++ I
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGI 514


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/723 (34%), Positives = 395/723 (54%), Gaps = 75/723 (10%)

Query: 118 LYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKAG-FDSDVYVNNTLINM 175
           L+ L  + N+   N Y +  L ++ +  L    G  I   +LK G FDS V V   LI+M
Sbjct: 131 LHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDM 190

Query: 176 YAVCG-DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-- 226
           +   G D+ +AR +FD+    +LV+W  ++  Y     +++A  ++ ++      P++  
Sbjct: 191 FTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFT 250

Query: 227 -------------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                          ++    +++ ++ +   V  + ++F  M 
Sbjct: 251 LTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTML 310

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
             +++SW+ALIS Y Q+   +EA+ LF NM+   V  +     SVL ACA+L     G  
Sbjct: 311 HHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQ 370

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   +K+G+     + N+LI+MY+                               + G+
Sbjct: 371 LHGQTIKLGLSTINCVGNSLINMYA-------------------------------RSGT 399

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           +E AR  F+ + EK+++S++T     A+     E+ +   E++H G+     T   ++S 
Sbjct: 400 MECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSG 457

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              +  + +G+ IHA I K+G   N  +   LI MY K G  + AL+VF+    + V +W
Sbjct: 458 AACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITW 517

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
            ++I GFA +G A K+LE+F EM + GV PNE+T++ VL AC H+GL+DE  +HFNSM  
Sbjct: 518 TSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHY 577

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
            H + P  +HY CMVDLLGR+G+L EA E I SMP   D   W   LG+C+ H + ++GE
Sbjct: 578 NHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGE 637

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
              +K++E +P     ++LLSN++AS+GRWDDV  +R  M ++ ++K  G S IE +  +
Sbjct: 638 HAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQV 697

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H+F  GD +HPQ  +I + LDE+A K+K  GY P+T  V  D++ E+KE  LF+HSEK+A
Sbjct: 698 HKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIA 757

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +A+ LI+   P PIR+ KNLR+C DCHTA K+IS    REIVVRD +RFHH K G CSC 
Sbjct: 758 VAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCN 817

Query: 796 DFW 798
           D+W
Sbjct: 818 DYW 820



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 232/529 (43%), Gaps = 88/529 (16%)

Query: 133 TYPLLAQASALRLSVFEG-----KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
           T PL+  +  L+  +  G     KL+H  ++ +G   D  + N+LI +Y+ CGD   A  
Sbjct: 36  TSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALS 95

Query: 188 LFDE--SPVLDLVSWNSILAGYVNADNVEEA--KFIYNKMPERNIIASN----------- 232
           +F        DLVSW++I++ + N      A   F++     RNII  N           
Sbjct: 96  IFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSC 155

Query: 233 ------------------------------SMIVLFGRKG-NVAEACRLFKEMPKKDLVS 261
                                         ++I +F + G ++  A  +F +M  K+LV+
Sbjct: 156 SNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVT 215

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+ +I+ Y Q  + ++A+ LF  ++      D+  + S+LSAC  L     G  +H+  +
Sbjct: 216 WTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVI 275

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           + G+   + +   L+ MY+                               K  +VE +R 
Sbjct: 276 RSGLASDVFVGCTLVDMYA-------------------------------KSAAVENSRK 304

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +F+ M+  +V+SW+ +ISGY Q  Q  E + LF  M H  + P+  T  SV+ AC  L  
Sbjct: 305 IFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPD 364

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              GK +H    K GL   + +G +LI+MY + G ++ A + F+   EK + S+N     
Sbjct: 365 FGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---A 421

Query: 502 FAMNGLADKSLEMFS-EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
              N  A  S E F+ E++ +GV  +  T+  +L     +G + +G +  +++I +    
Sbjct: 422 ADANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ-IHALIVKSGFG 480

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            N      ++ +  + G  + A ++   M    +V TW +++    KHG
Sbjct: 481 TNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHG 528



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 185/404 (45%), Gaps = 77/404 (19%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++  N   +  M+  Y Q  +   A+ L+  +L +    D +T   L  A  + L 
Sbjct: 204 VFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSA-CVELE 262

Query: 147 VFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            F  GK +H  V+++G  SDV+V  TL++MYA    +  +RK+F+     +++SW ++++
Sbjct: 263 FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALIS 322

Query: 206 GYVNADNVEEAKFIYNKM----------------------PERNI--------------- 228
           GYV +   +EA  ++  M                      P+  I               
Sbjct: 323 GYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLST 382

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                NS+I ++ R G +  A + F  + +K+L+S++       +    +E+   F + +
Sbjct: 383 INCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDES---FNHEV 439

Query: 287 DHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +H  V         +LS  A +  +  G  +HAL VK G    + + NALI MYS     
Sbjct: 440 EHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYS----- 494

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     KCG+ E A  +F+ M  ++V++W+++ISG+A+H 
Sbjct: 495 --------------------------KCGNKEAALQVFNDMGYRNVITWTSIISGFAKHG 528

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
             ++ L LF EM   G++P+E T ++V+SAC+H+  +D+  W H
Sbjct: 529 FATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEA-WKH 571



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 147/318 (46%), Gaps = 43/318 (13%)

Query: 33  LETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           L + L  C   + F+   Q+ S +I +GL +D F    L+           +  S KIF 
Sbjct: 251 LTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYA---KSAAVENSRKIFN 307

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            +   N   +  ++  Y+Q    Q+AI L+  ML+ +V  + +T+  + +A A       
Sbjct: 308 TMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGI 367

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H   +K G  +   V N+LINMYA  G +  ARK F+     +L+S+N+       
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 210 ADNVEE-------------AKFIYNKMPE------------------------RNIIASN 232
           A + +E             + F Y  +                           N+  +N
Sbjct: 428 ALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINN 487

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I ++ + GN   A ++F +M  +++++W+++IS + ++    +AL LF  M++  V  
Sbjct: 488 ALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKP 547

Query: 293 DEVVVVSVLSACANLTVV 310
           +EV  ++VLSAC+++ ++
Sbjct: 548 NEVTYIAVLSACSHVGLI 565


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/685 (36%), Positives = 375/685 (54%), Gaps = 71/685 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           I+  +L  G     ++   L+N  +  G++S ARKLFD+ P  D+  WN+I+  Y     
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
              A  +Y +M                                        E ++   N 
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ + G +  A  +F  +  + +VSW+++IS Y QN    EAL +F  M    V  D
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + +VSVL A  ++  ++ G S+H   +K+G+EC  +L                      
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDL---------------------- 311

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                 LIS  S+   Y KCG V  AR  F+ +    ++ W+ MISGY ++    E + L
Sbjct: 312 ------LISLTSL---YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIEL 362

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  M+   IRPD  T+ S I+AC  + +L+  +W+  YI  +  + + I+ T+LID Y K
Sbjct: 363 FRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAK 422

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G VD A  VF    +K V  W+A+++G+ ++G   +S+ +F  M+++GV+PN++TFVG+
Sbjct: 423 CGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGL 482

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC++ GLV+EG   F+ M +++ +EP  +HY C+VDLLGRAG L  A   + +MP+ P
Sbjct: 483 LTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEP 541

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
            V+ WGALL ACK H    +GE    +L  L P + G +V LSN++AS   WD V +VR 
Sbjct: 542 GVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRV 601

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M  +G+ K  G S+IE NG +  F AGD+THP+  EI   ++++ ++LK  G+ P T  
Sbjct: 602 LMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTES 661

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D++ EE E TL  HSE+LAIA+GLI+  P   +RI KNLR C++CH A K IS+   
Sbjct: 662 VLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVS 721

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REIVVRD  RFHHFK G+CSC D+W
Sbjct: 722 REIVVRDACRFHHFKDGACSCGDYW 746



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 233/525 (44%), Gaps = 83/525 (15%)

Query: 15  KSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           +S+      +   I+ SI +THL          QI +++++TGL    F  ++L+  +++
Sbjct: 69  ESTFKPDKFYASLIDDSIHKTHLN---------QIYAKLLVTGLQYGGFLIAKLVNKASN 119

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           +    E+S + K+F     P+ F++N ++R Y +      AI +Y  M    V  D +++
Sbjct: 120 IG---EVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSF 176

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + +A +   ++  G+ +H  + + GF+SDV+V N L+ +YA CG++  A  +F     
Sbjct: 177 PCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVD 236

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN---------------------- 232
             +VSW SI++GY       EA  I+++M + N+                          
Sbjct: 237 RTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSI 296

Query: 233 -----------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                            S+  L+ + G+V  A   F ++    L+ W+A+IS Y +N   
Sbjct: 297 HGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYA 356

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEA+ LF  M    +  D + V S ++ACA +  ++    +            + +  +L
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSL 416

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I  Y+ CG +  A  +FD   + D++ W++M+ G                          
Sbjct: 417 IDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVG-------------------------- 450

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                Y  H Q  E++ LF  M+  G+ P++ T V +++AC +   +++G  +   +R  
Sbjct: 451 -----YGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDY 505

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALI 499
           G++        ++D+  + G +D A   V +   E GVS W AL+
Sbjct: 506 GIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALL 550



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
            +PD+    S+I    H   L+Q   I+A +   GL+    L   L++    +G V  A 
Sbjct: 72  FKPDK-FYASLIDDSIHKTHLNQ---IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCAR 127

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           ++F    +  V  WNA++  ++ +G    ++EM++ M+ + V+P+  +F  VL AC  + 
Sbjct: 128 KLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALP 187

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            ++ G R  +  I  H  E +      +V L  + G +  A  +   + +   + +W ++
Sbjct: 188 ALEMG-RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL-VDRTIVSWTSI 245

Query: 602 LGACKKHGDHEMGERVGRKL--VELQPD 627
           +    ++G      R+  ++    ++PD
Sbjct: 246 ISGYAQNGQPIEALRIFSEMRKTNVRPD 273


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/654 (37%), Positives = 373/654 (57%), Gaps = 34/654 (5%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK-FIYNKMPERNI 228
           N++I  YA  GDL+ A  +FD +P  +++SWN+++ GY +   + EAK  I+++MP R  
Sbjct: 60  NSMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREE 119

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           ++ N+++  + + G+V  A   F+ MP+ D+V+W+ALI+   QN   EEA VL+ ++I  
Sbjct: 120 VSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLY-DLIPE 178

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI------------------- 329
           R +V    ++        LT  K   ++     ++     I                   
Sbjct: 179 RDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTL 238

Query: 330 -----NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
                + + ++I  Y+  G I  A ++FD+  N D+I+ N+M+  Y     ++ A+A+FD
Sbjct: 239 PDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFD 298

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
           ++ +K +VSW+TM++ YAQ     E  S+F  + H  +      +V    A  H + L +
Sbjct: 299 SIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVV----AYAHNMDLAE 354

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            + I   + +     +++  T ++ M  + G +  A E+F     + V SWN+LI G A 
Sbjct: 355 ARRIFYSMDEK----DTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMAS 410

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G    ++     M+  G  P+ ITF+G+L AC H+GLV+EG  HF SM  +H L P  +
Sbjct: 411 CGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWRE 470

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY  MVD+LGRAG L  A EL+E+MP  PDV  WG+LLG+CK H D ++G R    L++ 
Sbjct: 471 HYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQF 530

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
                G +VLL+N+++S GR  D L VR  M  RGV K PG S+I  +G++H F+AG+ +
Sbjct: 531 DDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEAS 590

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP+  EI + L  + + +K  GY PDT  V   +  EEKE  L  HSEKLAIAF  I   
Sbjct: 591 HPRHQEILSELSRLQELMKKAGYQPDTKAVLHSVLDEEKEVLLSYHSEKLAIAFASIACE 650

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P  PIRIMKNLR+C+DCHTA KF+S+   REI+VRD +RFH+F++G+CSC D+W
Sbjct: 651 PGTPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 704



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 211/437 (48%), Gaps = 25/437 (5%)

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232
           + +Y+  GDL +A+ +FD+ P  ++VSWNS++AG+     +  A  I+ +MP  +  + N
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           SMI  + + G++A A  +F   P+ +++SW+ALI+ Y  N M  EA  +  + +  R   
Sbjct: 61  SMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRR--- 117

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +EV   ++LSA A    V    S      +  +  +     ALI +    G++  AE L+
Sbjct: 118 EEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAW----TALIAVSGQNGQLEEAEVLY 173

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     DL++W ++I  Y   G + +++ ++  M E++ VS + MI  Y+Q+ +  +   
Sbjct: 174 DLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARK 233

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           +   +      PD++T  S+I A      +   + +   I+   +    I    +++ Y 
Sbjct: 234 MLDTLPD----PDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDV----IACNAMMEAYS 285

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
               +D+A  +F   ++K + SWN ++  +A  G  D++  +F  +    V  + +  V 
Sbjct: 286 SAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVV- 344

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
              A  H   + E  R F SM      E ++  +  MV +L + G L EA+EL   MP  
Sbjct: 345 ---AYAHNMDLAEARRIFYSMD-----EKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYR 396

Query: 593 PDVATWGALLGACKKHG 609
            +V +W +L+      G
Sbjct: 397 -NVVSWNSLIAGMASCG 412



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/506 (22%), Positives = 221/506 (43%), Gaps = 48/506 (9%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV------------- 127
           MS + +IFA +   +   +N+M+  Y Q      A  ++     +NV             
Sbjct: 41  MSNADEIFARMPRWSSSSWNSMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDN 100

Query: 128 -------GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS----DVYVNNTLINMY 176
                  GV     P   + S   L     +  H H+ ++ F+     DV     LI + 
Sbjct: 101 RMIPEAKGVIFDEMPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVS 160

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236
              G L  A  L+D  P  DLV+W +++  Y     + E+K +Y  MPERN ++  +MI+
Sbjct: 161 GQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMII 220

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
            + + G V +A ++   +P  D  + +++I  Y QN   ++A          R M D + 
Sbjct: 221 AYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDA----------REMFDSIK 270

Query: 297 VVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQ-NALIHMYSSCGEITTAEKLFDA 354
              V++  A +    +   + HA A+   I+    +  N ++  Y+  G +  A+ +FD+
Sbjct: 271 NPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDS 330

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
             + +++S N M+  Y     + +AR +F +M EKD V+W+ M++  AQH + +E   LF
Sbjct: 331 IPHKNVVSHNVMVVAYAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELF 390

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            +M +  +     +L++ +++C H +A  +  ++   +R  G K + I    ++     +
Sbjct: 391 AKMPYRNV-VSWNSLIAGMASCGHGMAAVRYLYV---MRNEGAKPDHITFMGILIACSHV 446

Query: 475 GCVDNALEVFHGTE-EKGVSSWNA----LIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           G V+     F   + + G+  W      ++      G    + E+   M      P+   
Sbjct: 447 GLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMP---FIPDVGA 503

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQ 555
           +  +LG+C+    V  G R   S++Q
Sbjct: 504 WGSLLGSCKTHSDVKLGTRAAESLLQ 529



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 156/334 (46%), Gaps = 24/334 (7%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ S +++A +   N      M+ AY Q     QA    + ML+     D  T   +  
Sbjct: 196 QLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQA----RKMLDTLPDPDQSTRTSMIV 251

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A    + + + + D +     + DV   N ++  Y+    L  A+ +FD      LVS
Sbjct: 252 AYAQNGYIKDAREMFDSIK----NPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVS 307

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           WN+++A Y  A N++EAK I++ +P +N+++ N M+V +    ++AEA R+F  M +KD 
Sbjct: 308 WNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVAYAHNMDLAEARRIFYSMDEKDT 367

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V+W+A+++   Q+    EA  LF  M  +R +V    +++ +++C +   + A   ++ +
Sbjct: 368 VTWTAMVAMLAQHGRLAEAQELFAKM-PYRNVVSWNSLIAGMASCGH--GMAAVRYLYVM 424

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD----LISWNS----MISGYL 371
             +     +I     LI    +C  +   E+ +    ++     LI W      M+    
Sbjct: 425 RNEGAKPDHITFMGILI----ACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLG 480

Query: 372 KCGSVEKARALFDAM-IEKDVVSWSTMISGYAQH 404
           + G +  AR L + M    DV +W +++     H
Sbjct: 481 RAGQLGAARELLETMPFIPDVGAWGSLLGSCKTH 514


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/720 (34%), Positives = 393/720 (54%), Gaps = 55/720 (7%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK-----L 152
            +N M+  Y        A+ L++ M  ++   D++T+  +  A    L +F G       
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA----LVLFVGNEQQCGQ 169

Query: 153 IHDHVLKAGFDS-DVYVNNTLINMYA--------VCGDLSAARKLFDESPVLDLVSWNSI 203
           +H  V+K G       V N L+++Y          C  + +ARKLFDE            
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDE------------ 217

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                              MP+R+ +   +MI  + R  ++  A  +F+ M +    +W+
Sbjct: 218 -------------------MPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+IS Y     ++EAL L   M    +  D++   +++SACAN+   + G  +HA  +K 
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN 318

Query: 324 GIE-----CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            +      C +++ NALI +Y    ++  A K+F A    ++I+WN+++SGY+  G +E+
Sbjct: 319 ELNPNHSFC-LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A++ F+ M  K++++ + MISG AQ+    E L LF +M+  G  P +      ++AC+ 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+ G+ +HA +   G + +  +G  +I MY K G V+ A  VF       + SWN++
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I     +G   K++E+F +M K GV P+ ITF+ VL AC H GLV++G  +FNSM++ + 
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + P   HY  MVDL  RAGM   A  +I+SMP  P    W ALL  C+ HG+ ++G    
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            +L +L P +DG +VLLSNI+A  GRW+DV +VR +M  + V K P CS IE    +H F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
           +  D  HP++  +   L+++  ++K  GY PDT  V  D++ E+KE  L  HSEKLA+ F
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           G++ + P   +R+ KN+RIC DCH A KF+S+   REI+VRDR RFHHFK+G CSC D+W
Sbjct: 738 GIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 240/502 (47%), Gaps = 70/502 (13%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H H++ +GF    +  N L+ MY    ++  AR+LF+E P  D ++  +++  Y  
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 210 ADNVEEAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL----VSWS 263
             N+E  + I+N  P   R+ +  N+MI  +   G+   A  LF+ M + D      +++
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVK 322
           +++S          ALVLF+   + +       VV     C + +V+ A  SV+   A +
Sbjct: 152 SVLS----------ALVLFVGN-EQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASE 200

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +GI                C  + +A KLFD     D ++W +MI+GY++   +  AR +
Sbjct: 201 LGI---------------PCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREV 245

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F+AM+E    +W+ MISGY     F E L+L  +M+  GI+ D+ T  ++ISAC ++ + 
Sbjct: 246 FEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSF 305

Query: 443 DQGKWIHAYIRKNGLKINS----ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             GK +HAYI KN L  N      +   LI +Y K   VD A ++F+    + + +WNA+
Sbjct: 306 QMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAI 365

Query: 499 IIGF-------------------------------AMNGLADKSLEMFSEMKKSGVTPNE 527
           + G+                               A NG  D+ L++F +M+  G  P +
Sbjct: 366 LSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 425

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
             F G L AC  +G ++ G R  ++ +     E +      M+ +  + G+++ AE +  
Sbjct: 426 FAFAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 588 SMPMSPDVATWGALLGACKKHG 609
           +MP S D+ +W +++ A  +HG
Sbjct: 485 TMP-SVDLVSWNSMIAALGQHG 505



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 205/442 (46%), Gaps = 69/442 (15%)

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           G  +N M+  Y+     Q+A+ L + M    +  D+ TY  +  A A   S   GK +H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHA 313

Query: 156 HVLKAGFDSD----VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           ++LK   + +    + V+N LI +Y     +  ARK+F   PV ++++WN+IL+GYVNA 
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            +EEAK  + +MP +N++    MI    + G   E  +LFK+M                +
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM----------------R 417

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
            + +E     F                  L+AC+ L  ++ G  +HA  V +G E  +++
Sbjct: 418 LDGFEPCDFAF---------------AGALTACSVLGALENGRQLHAQLVHLGYESSLSV 462

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NA+I MY+ CG +  AE +F    ++DL+SWNSMI+   + G   KA  LFD M+++  
Sbjct: 463 GNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE-- 520

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHA 450
                                        G+ PD  T ++V++AC+H   +++G+ + ++
Sbjct: 521 -----------------------------GVFPDRITFLTVLTACSHAGLVEKGRHYFNS 551

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGLAD 509
            +   G+         ++D++ + G    A  V      K G   W AL+ G  ++G  D
Sbjct: 552 MLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMD 611

Query: 510 KSLEMFSEMKKSGVTPNEITFV 531
             +E   ++ K  +  N+ T+V
Sbjct: 612 LGIEAAEQLFKL-MPQNDGTYV 632



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 91/461 (19%), Positives = 180/461 (39%), Gaps = 94/461 (20%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F E P  N      M+    Q     + + L+K M  +     ++ +     A ++  ++
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
             G+ +H  ++  G++S + V N +I+MYA CG + AA  +F   P +DLVSW       
Sbjct: 442 ENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW------- 494

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                                   NSMI   G+ G+  +A  LF +M K+          
Sbjct: 495 ------------------------NSMIAALGQHGHGVKAIELFDQMLKEG--------- 521

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIE 326
                                 V  D +  ++VL+AC++  +V+ G    +++    GI 
Sbjct: 522 ----------------------VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGS----VEKARA 381
              +    ++ ++   G  + A  + D+         W ++++G    G+    +E A  
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQ 619

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF  M + D  ++  + + YA   ++++   +   M+   +R + A     +    H+  
Sbjct: 620 LFKLMPQND-GTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFM 678

Query: 442 LDQGKW-----IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE----EKGV 492
           +D         ++ Y+ + GL++             KLG + +   V H  E    E  +
Sbjct: 679 VDDDVHPEVLSVYRYLEQLGLEMK------------KLGYIPDTKFVLHDMEYEQKEHAL 726

Query: 493 SSWN-ALIIGFAMNGL-ADKSLEMFSEMKKSGVTPNEITFV 531
           S+ +  L +GF +  L  D ++ +F  ++  G   N   F+
Sbjct: 727 STHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFM 767


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 333/557 (59%), Gaps = 31/557 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G+VA A  +F      +L  W+ +I  Y  ++    A+ L+ +M    +  +      VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           +AC  L  +  G  +H+  VK G++    L N LI +Y++                    
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAA-------------------- 114

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                      CG ++ A  +FD M E D  SWSTM+SGY+Q+ Q  ETL L  EMQ   
Sbjct: 115 -----------CGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAEN 163

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           +  D  TL SV+  C  L  LD GKW+H+YI K G+KI+ +LGT L+ MY K G +DNAL
Sbjct: 164 VSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNAL 223

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF G  E+ V++W+ +I G+A++G  +K+L++F  MK+S + PN +TF  VL A  H G
Sbjct: 224 KVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSG 283

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           LV++GH+ F +M  E+++ P  KHYGCMVDL  RAGM+  A + I++MP+ P+V  W  L
Sbjct: 284 LVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL 343

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           LGACK HG   +GE + RK+++L P     +V +SN++AS GRW  V +VR +M  +   
Sbjct: 344 LGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPK 403

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K  G S IE N ++H+F+ G+ +HP+  +I  ML +MA+KLK  G+   T++V  DID+E
Sbjct: 404 KQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEE 463

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
           EKE  L  HSE+LAIA+GL+     +PIRI+KNLR C DCH   K IS  ++REI++RDR
Sbjct: 464 EKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDR 523

Query: 782 HRFHHFKHGSCSCMDFW 798
             FHHF+   CSC D+W
Sbjct: 524 VCFHHFRERGCSCNDYW 540



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 40/318 (12%)

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
           P   ++Y+  IF+    PN F++NT++R Y   + P  AI LYK M    +  ++YT+  
Sbjct: 13  PHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGF 72

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           +  A    L + EG+ +H  ++KAG D +  + N LI +YA CG +  A  +FDE P  D
Sbjct: 73  VLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPD 132

Query: 197 LVSWNSILAGYV-NADNVEEAKFIYNKMPER----------------------------- 226
             SW+++++GY  N   VE  K +     E                              
Sbjct: 133 SASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS 192

Query: 227 ---------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                    +++   +++ ++ + G++  A ++F+ M ++D+ +WS +I+ Y  +   E+
Sbjct: 193 YIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEK 252

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALI 336
           AL LF  M   +++ + V   SVLSA ++  +V+ G  +   +  +  I   I     ++
Sbjct: 253 ALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 312

Query: 337 HMYSSCGEITTAEKLFDA 354
            ++   G +  A K    
Sbjct: 313 DLFCRAGMVGHAHKFIQT 330



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           ++++ NT+I  Y++     +A  L+ +   L  +S NS   G+V     +  +    +  
Sbjct: 31  NLFMWNTIIRGYSISDSPISAIALYKDM-FLCGISPNSYTFGFVLNACCKLLRLCEGQEL 89

Query: 225 ERNIIAS---------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
              I+ +         N +I L+   G +  AC +F EMP+ D  SWS ++S Y QN   
Sbjct: 90  HSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQA 149

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            E L L   M    V  D   + SV+  C +L V+  G  VH+   K G++  + L  AL
Sbjct: 150 VETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTAL 209

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDV 391
           + MYS CG +  A K+F      D+ +W+ MI+GY   G  EKA  LFDAM    I  + 
Sbjct: 210 VGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNC 269

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEM 417
           V++++++S Y+      +   +F  M
Sbjct: 270 VTFTSVLSAYSHSGLVEKGHQIFETM 295


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/766 (32%), Positives = 411/766 (53%), Gaps = 73/766 (9%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           + +S  Q  Q+ +Q I T  ++ T +AS +I   T+L    E    FK    L+SP    
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKT---LKSPPVLA 72

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++R +  +++  +A+  +  M  +    D+  +P + ++  + + +  G+ +H  ++
Sbjct: 73  WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G D D+Y  N L+NMYA         KL               +   ++  NV     
Sbjct: 133 RLGMDCDLYTGNALMNMYA---------KLLG-------------MGSKISVGNV----- 165

Query: 219 IYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
            +++MP+R        + + + I+ FG    +    R+F+ MP+KD+VS++ +I+ Y Q+
Sbjct: 166 -FDEMPQRTSNSGDEDVKAETCIMPFG----IDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            MYE+AL +   M    +  D   + SVL   +    V  G  +H   ++ GI+  + + 
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIG 280

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           ++L+ MY+                               K   +E +  +F  +  +D +
Sbjct: 281 SSLVDMYA-------------------------------KSARIEDSERVFSRLYCRDGI 309

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+++++GY Q+ +++E L LF +M    ++P      SVI AC HL  L  GK +H Y+
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            + G   N  + + L+DMY K G +  A ++F         SW A+I+G A++G   +++
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F EMK+ GV PN++ FV VL AC H+GLVDE   +FNSM + + L    +HY  + DL
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADL 489

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG L+EA   I  M + P  + W  LL +C  H + E+ E+V  K+  +  ++ G +
Sbjct: 490 LGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAY 549

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VL+ N++AS GRW ++ ++R  M ++G+ K P CS IE     H F++GDR+HP +++I+
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKIN 609

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L  + ++++ EGY  DT  V  D+D+E K   LF HSE+LA+AFG+I   P   IR+ 
Sbjct: 610 EFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVT 669

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KN+RIC DCH A KFIS+  +REI+VRD  RFHHF  G+CSC D+W
Sbjct: 670 KNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/652 (38%), Positives = 373/652 (57%), Gaps = 48/652 (7%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA----------DNV 213
           +DV+  N++I   A  GD + A   F     L L    S     + A             
Sbjct: 39  TDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQT 98

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            +  F++    + +I  S+++IV++   G + +A ++F E+PK+++VSW+++I  Y+ N 
Sbjct: 99  HQQAFVFGY--QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156

Query: 274 MYEEALVLFMNMI------DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
              +A+ LF +++      D  + +D + +VSV+SAC+ +       S+H+  +K G + 
Sbjct: 157 NALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDR 216

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            +++ N L+  Y+  GE                             G V  AR +FD ++
Sbjct: 217 GVSVGNTLLDAYAKGGE-----------------------------GGVAVARKIFDQIV 247

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACTHLVALDQGK 446
           +KD VS+++++S YAQ    +E   +F  +  + +    A TL +V+ A +H  AL  GK
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH  + + GL+ + I+GT++IDMY K G V+ A + F   + K V SW A+I G+ M+G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            A K+LE+F  M  SGV PN ITFV VL AC H GL  EG R FN+M     +EP  +HY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY 427

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDLLGRAG L++A +LI+ M M PD   W +LL AC+ H + E+ E    +L EL  
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDS 487

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            + G+++LLS+I+A  GRW DV  VR +M  RG+VK PG S++E NG +H FL GD  HP
Sbjct: 488 SNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  +I   L E+ +KL   GY  +T  V  D+D+EEKE TL  HSEKLAIAFG++   P 
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + + ++KNLR+C+DCH   K IS+  DRE VVRD  RFHHFK G CSC D+W
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 223/498 (44%), Gaps = 114/498 (22%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  + F +N+++    +     +A+  +  M   ++     ++P   +A +    +F 
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-- 207
           GK  H      G+ SD++V++ LI MY+ CG L  ARK+FDE P  ++VSW S++ GY  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 208 ---------------VNADNVEEAKFI-----------YNKMP----------------- 224
                          V+ ++ ++A F+            +++P                 
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF 214

Query: 225 ERNIIASNSMIVLF--GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +R +   N+++  +  G +G VA A ++F ++  KD VS+++++S Y Q+ M  EA  +F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVF 274

Query: 283 MNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
             ++ ++V+  + + + +VL A ++   ++ G  +H   +++G+E  + +  ++I MY  
Sbjct: 275 RRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG + TA K FD   N ++ SW +MI+GY   G   KA  LF AMI+             
Sbjct: 335 CGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS------------ 382

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYIRKNGLKIN 460
                              G+RP+  T VSV++AC+H  + ++  +W +A   + G+   
Sbjct: 383 -------------------GVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV--- 420

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                                       E G+  +  ++      G   K+ ++   MK 
Sbjct: 421 ----------------------------EPGLEHYGCMVDLLGRAGFLQKAYDLIQRMK- 451

Query: 521 SGVTPNEITFVGVLGACR 538
             + P+ I +  +L ACR
Sbjct: 452 --MKPDSIIWSSLLAACR 467



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 21/233 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN---YTYPLLA--QA 140
           KIF  +   +   +N++M  Y Q  +  +A  +++ ++ N V   N    +  LLA   +
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHS 300

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            ALR+    GK IHD V++ G + DV V  ++I+MY  CG +  ARK FD     ++ SW
Sbjct: 301 GALRI----GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSW 356

Query: 201 NSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
            +++AGY    +  +A  ++  M +     N I   S++      G   E  R F  M  
Sbjct: 357 TAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKG 416

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +      L  +  ++    +    ++A  L   M   ++  D ++  S+L+AC
Sbjct: 417 RFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAAC 466


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/801 (33%), Positives = 417/801 (52%), Gaps = 78/801 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++CQ  +   QI  + I     A+ F  + +++             +F   A     N 
Sbjct: 34  LRQCQDLESVRQIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIA---RKND 89

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           + + +M+ AY Q    + A+ LYK M L  N  V  YT  L A AS   L   EGK IH 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVV--YTTVLGACASIKALE--EGKAIHS 145

Query: 156 HVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            +    G   DV + N+L+ MYA CG L  A++LF+      + SWN+++A Y  + + E
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE 205

Query: 215 EAKFIYNKM------------------------------------PERNIIASNSMIVLF 238
           EA  +Y  M                                     E ++   N+++ ++
Sbjct: 206 EAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMY 265

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R   + +A ++F+ +P++D+VSWSA+I+ + + ++++EA+  +  M    V  +     
Sbjct: 266 ARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFA 325

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           SVL ACA++  ++AG +VH                               +++   G+ +
Sbjct: 326 SVLLACASVGDLRAGRAVH-------------------------------DQILGNGYKI 354

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
            L++  +++  Y   GS+++AR+LFD +  +D   W+ +I GY++    +  L L+ EM+
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 414

Query: 419 HHGIRPDEATLVS-VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +    P    + S VISAC  L A    +  H+ I  +G+  + +L T+L++MY + G +
Sbjct: 415 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNL 474

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A +VF     +   +W  LI G+A +G    +L ++ EM+  G  P+E+TF+ VL AC
Sbjct: 475 ESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYAC 534

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GL ++G + F S+  ++ + PN  HY C++DLL RAG L +AEELI +MP+ P+  T
Sbjct: 535 SHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVT 594

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           W +LLGA + H D +       ++ +L P     +VLLSN+HA  G    +  VR  MV 
Sbjct: 595 WSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVA 654

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           RGV K  G S IE    IHEF  GD +HP+  EI   L  ++ K+K  GY P++ EV  D
Sbjct: 655 RGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHD 714

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           + ++EKE  L  HSEKLAIAFGLI  +P   +RI   LRIC+DCH+A KFIS    REI+
Sbjct: 715 VGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREII 774

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRD  RFH F+ G CSC D+W
Sbjct: 775 VRDSSRFHKFRDGQCSCGDYW 795


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/720 (34%), Positives = 393/720 (54%), Gaps = 55/720 (7%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK-----L 152
            +N M+  Y        A+ L++ M  ++   D++T+  +  A    L +F G       
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA----LVLFVGNEQQCGQ 169

Query: 153 IHDHVLKAGFDS-DVYVNNTLINMYA--------VCGDLSAARKLFDESPVLDLVSWNSI 203
           +H  V+K G       V N L+++Y          C  + +ARKLFDE            
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDE------------ 217

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                              MP+R+ +   +MI  + R  ++  A  +F+ M +    +W+
Sbjct: 218 -------------------MPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+IS Y     ++EAL L   M    +  D++   +++SACAN+   + G  VHA  +K 
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN 318

Query: 324 GIE-----CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            +      C +++ NALI +Y    ++  A K+F A    ++I+WN+++SGY+  G +E+
Sbjct: 319 ELNPNHSFC-LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A++ F+ M  K++++ + MISG AQ+    E L LF +M+  G  P +      ++AC+ 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+ G+ +HA +   G + +  +G  +I MY K G V+ A  VF       + SWN++
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I     +G   K++E+F +M K GV P+ ITF+ VL AC H GLV++G  +FNSM++ + 
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + P   HY  MVDL  RAGM   A  +I+SMP  P    W ALL  C+ HG+ ++G    
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            +L +L P +DG +VLLSNI+A  GRW++V +VR +M  + V K P CS IE    +H F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
           +  D  HP++  +   L+++  ++K  GY PDT  V  D++ E+KE  L  HSEKLA+ F
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           G++ + P   +R+ KN+RIC DCH A KF+S+   REI+VRDR RFHHFK+G CSC D+W
Sbjct: 738 GIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 241/502 (48%), Gaps = 70/502 (13%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H H++ +GF    +  N L+ MY    +L  AR+LF+E P  D ++  +++  Y  
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 210 ADNVEEAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL----VSWS 263
             N+E  + I+N  P   R+ +  N+MI  +   G+   A  LF+ M + D      +++
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVK 322
           +++S          ALVLF+   + +       VV     C + +V+ A  SV+   A +
Sbjct: 152 SVLS----------ALVLFVGN-EQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASE 200

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +GI               SC  + +A KLFD     D ++W +MI+GY++   +  AR +
Sbjct: 201 LGI---------------SCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREV 245

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           F+AM+E    +W+ MISGY     F E L+L  +M+  GI+ D+ T  ++ISAC ++ + 
Sbjct: 246 FEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSF 305

Query: 443 DQGKWIHAYIRKNGLKINS----ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             GK +HAYI KN L  N      +   LI +Y K   VD A ++F+    + + +WNA+
Sbjct: 306 QMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAI 365

Query: 499 IIGF-------------------------------AMNGLADKSLEMFSEMKKSGVTPNE 527
           + G+                               A NG  D+ L++F +M+  G  P +
Sbjct: 366 LSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 425

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
             F G L AC  +G ++ G R  ++ +     E +      M+ +  + G+++ AE +  
Sbjct: 426 FAFAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 588 SMPMSPDVATWGALLGACKKHG 609
           +MP S D+ +W +++ A  +HG
Sbjct: 485 TMP-SVDLVSWNSMIAALGQHG 505



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 205/442 (46%), Gaps = 69/442 (15%)

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           G  +N M+  Y+     Q+A+ L + M    +  D+ TY  +  A A   S   GK +H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHA 313

Query: 156 HVLKAGFDSD----VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           ++LK   + +    + V+N LI +Y     +  ARK+F   PV ++++WN+IL+GYVNA 
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            +EEAK  + +MP +N++    MI    + G   E  +LFK+M                +
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM----------------R 417

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
            + +E     F                  L+AC+ L  ++ G  +HA  V +G E  +++
Sbjct: 418 LDGFEPCDFAF---------------AGALTACSVLGALENGRQLHAQLVHLGYESSLSV 462

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NA+I MY+ CG +  AE +F    ++DL+SWNSMI+   + G   KA  LFD M+++  
Sbjct: 463 GNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKE-- 520

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHA 450
                                        G+ PD  T ++V++AC+H   +++G+ + ++
Sbjct: 521 -----------------------------GVFPDRITFLTVLTACSHAGLVEKGRHYFNS 551

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGLAD 509
            +   G+         ++D++ + G    A  V      K G   W AL+ G  ++G  D
Sbjct: 552 MLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMD 611

Query: 510 KSLEMFSEMKKSGVTPNEITFV 531
             +E   ++ K  +  N+ T+V
Sbjct: 612 LGIEAAEQLFKL-MPQNDGTYV 632



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/461 (19%), Positives = 179/461 (38%), Gaps = 94/461 (20%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F E P  N      M+    Q     + + L+K M  +     ++ +     A ++  ++
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
             G+ +H  ++  G++S + V N +I+MYA CG + AA  +F   P +DLVSW       
Sbjct: 442 ENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW------- 494

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                                   NSMI   G+ G+  +A  LF +M K+          
Sbjct: 495 ------------------------NSMIAALGQHGHGVKAIELFDQMLKEG--------- 521

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIE 326
                                 V  D +  ++VL+AC++  +V+ G    +++    GI 
Sbjct: 522 ----------------------VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGS----VEKARA 381
              +    ++ ++   G  + A  + D+         W ++++G    G+    +E A  
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQ 619

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF  M + D  ++  + + YA   +++E   +   M+   +R + A     +    H+  
Sbjct: 620 LFKLMPQND-GTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFM 678

Query: 442 LDQGKW-----IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE----EKGV 492
           +D         ++ Y+ + GL++             KLG + +   V H  E    E  +
Sbjct: 679 VDDDVHPEVLSVYRYLEQLGLEMK------------KLGYIPDTKFVLHDMEYEQKEHAL 726

Query: 493 SSWN-ALIIGFAMNGL-ADKSLEMFSEMKKSGVTPNEITFV 531
           S+ +  L +GF +  L    ++ +F  ++  G   N   F+
Sbjct: 727 STHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFM 767


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 333/567 (58%), Gaps = 31/567 (5%)

Query: 232  NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             S++ L+ + G +  A R+F EMP    V W+ALI+ Y       EA+ +  N   + + 
Sbjct: 565  TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 624

Query: 292  VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             D    V VL+ACA +  +  G +V   A + G+                      A+ +
Sbjct: 625  PDSFTAVRVLTACARIADLATGETVWRAAEQEGV----------------------AQSV 662

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
            F A   +DL         Y+KCG + KAR +FD M  KD V+W  M+ GYA +    E L
Sbjct: 663  FVATAAVDL---------YVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREAL 713

Query: 412  SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
             LF+ MQ  G++PD   +   +SACT L ALD G+     +  +    N +LGT LIDMY
Sbjct: 714  DLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMY 773

Query: 472  MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
             K G    A  VF    +K +  WNA+I+G  M G    +  +  +M+KSGV  N+ TF+
Sbjct: 774  AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 833

Query: 532  GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            G+L +C H GL+ +G R+F++M + + + P  +HYGCMVDLL RAG+L+EA +L++ MPM
Sbjct: 834  GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 893

Query: 592  SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
              +    GALLG CK H + E+ E V ++L+ L+P + G +V+LSNI++++GRW+D  ++
Sbjct: 894  PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 953

Query: 652  RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
            R  M  +GV K+P CS +E  G +HEF  GD++HP  ++I   LDE+  ++K  GY P T
Sbjct: 954  RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 1013

Query: 712  LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
              V FD++ EEKE TL  HSEKLAIAF L+   P   IR+ KNLR+C+DCHTA K +SR 
Sbjct: 1014 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 1073

Query: 772  FDREIVVRDRHRFHHFKHGSCSCMDFW 798
              REI+VRD +RFH F+ GSCSC D+W
Sbjct: 1074 THREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 149/356 (41%), Gaps = 75/356 (21%)

Query: 133 TYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           T P+ L  AS L   +  G+ +H   LK    ++ +V  +L+++YA CG L  A+++FDE
Sbjct: 527 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 586

Query: 192 SPVLDLVSWNSILAGYVNADNVEEA------KFIYNKMPE-------------------- 225
            P    V W +++  Y++A ++ EA       F     P+                    
Sbjct: 587 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 646

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                        +++  + + + L+ + G +A+A  +F +M  KD V+W A++  Y  N
Sbjct: 647 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 706

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF+ M    +  D   V   LSAC  L  +  G    A+ +    E   N  
Sbjct: 707 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR--QAIRMVDWDEFLDNPV 764

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  ALI MY+ CG    A  +F      D+I WN+MI G                     
Sbjct: 765 LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL-------------------- 804

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                    G   H++ +   +L  +M+  G++ ++ T + ++ +CTH   +  G+
Sbjct: 805 ---------GMTGHEKIA--FALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 849



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/385 (18%), Positives = 166/385 (43%), Gaps = 52/385 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  ++ AY+     ++A+ + +    N +  D++T   +  A A   
Sbjct: 582 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +     + G    V+V    +++Y  CG+++ AR++FD+    D V+W +++ 
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 701

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY +  +  EA  ++  M                                          
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 761

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N +   ++I ++ + G+  EA  +F++M KKD++ W+A+I         + A  L   M 
Sbjct: 762 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME 821

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V +++   + +L +C +  +++ G    H +     I   I     ++ + S  G +
Sbjct: 822 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLL 881

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMIEKDVV--SWST----MI 398
             A +L D   ++ + + N++I G L  G  + +   L + ++++ ++   W++    M+
Sbjct: 882 QEAHQLVD---DMPMPA-NAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVML 937

Query: 399 SG-YAQHDQFSETLSLFMEMQHHGI 422
           S  Y+   ++ +   L ++M+  G+
Sbjct: 938 SNIYSNRGRWEDAAKLRLDMKAKGV 962



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L  G+ +HA   K     N  + T+L+ +Y K G +  A  VF          W ALI  
Sbjct: 542 LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 601

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +   G   +++ +      +G+ P+  T V VL AC  +  +  G   + +  QE  +  
Sbjct: 602 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEG-VAQ 660

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +       VDL  + G + +A E+ + M    D   WGA++G    +G
Sbjct: 661 SVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVAWGAMVGGYASNG 707


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/651 (38%), Positives = 362/651 (55%), Gaps = 64/651 (9%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EGK +H H+  +G    +Y++N L++MYA CG L  A K+FDE                 
Sbjct: 137 EGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDE----------------- 178

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                         M  R++ + N MI  + + GN  +A  LF +MP +D  SW+A+IS 
Sbjct: 179 --------------MVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISG 224

Query: 269 YEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
             Q+   EEAL L+  M  H     ++  + S L+A A +  +  G  +H   +++G++ 
Sbjct: 225 CVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDS 284

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
                                          D + W S++  Y KCGS+E+AR +FD M 
Sbjct: 285 -------------------------------DEVVWCSLLDMYGKCGSIEEARYIFDKME 313

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
           E+DVVSW+TMI  Y ++ +  E  +LF  + +  I P++ T   V++AC  L A D GK 
Sbjct: 314 ERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ 373

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IHAY+ + G    S   + L+ MY K G ++NA  VF    +  + SW +L++G+A +G 
Sbjct: 374 IHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQ 433

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
            DK+L  F  + KSG  P+ I F+GVL AC H GLVD+G  +F+S+ ++H L     HY 
Sbjct: 434 HDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYA 493

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           C++DLL RAG   EAE +I  MP+ PD   W ALLG C+ HG+ E+ +R  + L E++P+
Sbjct: 494 CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPE 553

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
           +   +V L+NI+AS G   +   +R  M  RG+VK PG S IE    +H F  GD +HP+
Sbjct: 554 NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPK 613

Query: 688 INEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN 747
             EI   L E++K++K  GY PDT  V  D++ E+KE  L  HSEKLA+AFG+I+     
Sbjct: 614 SKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGT 673

Query: 748 PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           PI++ KNLR C DCH A KFIS    R+I+VRD +RFH F+ GSCSC D+W
Sbjct: 674 PIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 174/318 (54%), Gaps = 4/318 (1%)

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
           + +++L  C     +K G  VHA  +K      + + N L+ MY+ CG +  AEK+FD  
Sbjct: 121 IYLTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEM 179

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            + DL SWN MISGY+K G+ EKAR LFD M  +D  SW+ +ISG  QH++  E L L+ 
Sbjct: 180 VHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYR 239

Query: 416 EMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            MQ H   + ++ T+ S ++A   + +L  GK IH +I + GL  + ++  +L+DMY K 
Sbjct: 240 LMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKC 299

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G ++ A  +F   EE+ V SW  +I  +  NG  ++   +F  +  S + PN+ TF GVL
Sbjct: 300 GSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVL 359

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC  +   D G +    M++    +  S     +V +  + G ++ A+ + E +P  PD
Sbjct: 360 NACADLAAEDLGKQIHAYMVRVG-FDSFSSAASALVHMYSKCGDIENAKSVFEILP-QPD 417

Query: 595 VATWGALLGACKKHGDHE 612
           + +W +LL    +HG H+
Sbjct: 418 LFSWTSLLVGYAQHGQHD 435



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 192/429 (44%), Gaps = 52/429 (12%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC S     ++  +M+   L +     S  +K             +  +F  + + + F 
Sbjct: 165 KCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGN-------FEKARNLFDKMPNRDNFS 217

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY-TYPLLAQASALRLSVFEGKLIHDHV 157
           +  ++   +Q N P++A+ LY+LM  ++    N  T      ASA   S+  GK IH H+
Sbjct: 218 WTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHI 277

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           ++ G DSD  V  +L++MY  CG +  AR +FD+    D+VSW +++  Y+     EE  
Sbjct: 278 MRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGF 337

Query: 218 FIYNKMPERNII---------------------------------------ASNSMIVLF 238
            ++  +   NI+                                       A+++++ ++
Sbjct: 338 ALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMY 397

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            + G++  A  +F+ +P+ DL SW++L+  Y Q+  +++AL  F  ++      D +  +
Sbjct: 398 SKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFI 457

Query: 299 SVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH- 356
            VLSACA+  +V  G    H++  K G+   I+    +I + +  G+ T AE + +    
Sbjct: 458 GVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPI 517

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSL 413
             D   W +++ G    G++E A+    ++ E   ++  ++ T+ + YA     +E  ++
Sbjct: 518 KPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANI 577

Query: 414 FMEMQHHGI 422
              M   GI
Sbjct: 578 RETMDSRGI 586



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +P  +  ++++  C    AL +GK +HA+I+ +G  I   +   L+DMY K G + +A +
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF--VGVLGACRHM 540
           VF     + + SWN +I G+   G  +K+  +F +M      PN   F    ++  C   
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKM------PNRDNFSWTAIISGCVQH 228

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSK----------------HYG----------------- 567
              +E    +  ++Q+H    ++K                H G                 
Sbjct: 229 NRPEEALELYR-LMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEV 287

Query: 568 ---CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV-- 622
               ++D+ G+ G ++EA  + + M    DV +W  ++    K+G  E G  + R L+  
Sbjct: 288 VWCSLLDMYGKCGSIEEARYIFDKME-ERDVVSWTTMIHTYLKNGRREEGFALFRHLMNS 346

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            + P+   F  +L N  A     D   ++   MVR G
Sbjct: 347 NIMPNDFTFAGVL-NACADLAAEDLGKQIHAYMVRVG 382


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/553 (41%), Positives = 338/553 (61%), Gaps = 32/553 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACA 305
           A ++F ++   ++ +W+ +I  + ++E    A+ LF  M     ++ D      +  A A
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L  V  G  +H++ V+ G +    +QN+L+HMYS          +F             
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS----------VF------------- 184

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
                   G  E A  +F+ M  +D V+W+++I+G+A +   +E L+L+ EM   G+ PD
Sbjct: 185 --------GFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T+VS++SAC  L AL  G+ +H Y+ K GL  N      L+D+Y K G   +A +VF 
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             EE+ V SW +LI+G A+NGL +++L++F E+++ G+ P+EITFVGVL AC H G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F  M +E+ + P  +H+GCMVDLL RAG + +A + I +MP+ P+   W  LLGAC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
             HG  E+GE    ++  L+  H G  VLLSN++AS+ RW DV  VR +M+ +GV K PG
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S++E    ++EF+ GDR+HPQ  E   ML ++ + LK+EGY P T+ V  DI++EEKET
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKET 536

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  H+EK+AIAF L+   P  PIRIMKNLR+C DCH A K IS+ F+REI+VRDR RFH
Sbjct: 537 ALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFH 596

Query: 786 HFKHGSCSCMDFW 798
           HFK GSCSC D+W
Sbjct: 597 HFKDGSCSCKDYW 609



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 170/349 (48%), Gaps = 53/349 (15%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLAQ 139
           MS++ +IF  +++PN F +NTM+R + +   P  A+ L+  M   +++  D +T+P L +
Sbjct: 85  MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A  + V  G+ IH  V++ GFDS  +V N+L++MY+V G   +A ++F+     D V+
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVA 204

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PE---------------------------- 225
           WNS++ G+       EA  +Y +M      P+                            
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV 264

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                +N  ASN+++ L+ + GN  +A ++F EM ++ +VSW++LI     N +  EAL 
Sbjct: 265 KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALK 324

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           LF  +    +   E+  V VL AC++  ++  G +    +  + GI   I     ++ + 
Sbjct: 325 LFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLL 384

Query: 340 SSCGEITTAEKLFDAGHNLDL----ISWNSM-----ISGYLKCGSVEKA 379
              G++  A   +D   N+ +    + W ++     I G+L+ G V +A
Sbjct: 385 CRAGKVGDA---YDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARA 430



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 71/311 (22%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-------PE-- 225
           + ++   +S A ++F++    ++ +WN+++ G+  ++N   A  ++++M       P+  
Sbjct: 78  LVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTH 137

Query: 226 --------------------------RNIIAS-----NSMIVLFGRKGNVAEACRLFKEM 254
                                     RN   S     NS++ ++   G    A ++F+ M
Sbjct: 138 TFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIM 197

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +D V+W+++I+ +  N M  EAL L+  M    V  D   +VS+LSAC  L  +  G 
Sbjct: 198 SYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGE 257

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            VH   VK+G+    +  NAL+ +YS CG    A+K+FD      ++SW S+I G     
Sbjct: 258 RVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL---- 313

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                  ++G       +E L LF E++  G++P E T V V+ 
Sbjct: 314 ----------------------AVNGLG-----NEALKLFGELERQGLKPSEITFVGVLY 346

Query: 435 ACTHLVALDQG 445
           AC+H   LD+G
Sbjct: 347 ACSHCGMLDEG 357



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 50  LSQMILTGLIADTFAASRLIKFST----DLLPFIEMSYSFKIFAFLESPNGFIFNTMMRA 105
           L + I + ++ + F + R ++ S      +  F E +Y  ++F  +   +   +N+++  
Sbjct: 154 LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAY--QVFEIMSYRDRVAWNSVING 211

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD 165
           +    +P +A+ LY+ M +  V  D +T   L  A     ++  G+ +H +++K G   +
Sbjct: 212 FALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            + +N L+++Y+ CG+   A+K+FDE     +VSW S++ G
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG 312


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/567 (41%), Positives = 341/567 (60%), Gaps = 45/567 (7%)

Query: 247 ACRLFKEMPKKDLVSWSALISCY-EQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSAC 304
           A  +F  +P   L  ++ LIS     ++    A  L+ +++ H+ +  +     S+  AC
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKAC 114

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A+   ++ G  +HA  +K     Y                              D    N
Sbjct: 115 ASHPWLQHGPPLHAHVLKFLQPPY------------------------------DPFVQN 144

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ---HDQFS----------ETL 411
           S+++ Y K G +  +R LFD + E D+ +W+TM++ YAQ   H  +S          E L
Sbjct: 145 SLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEAL 204

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF +MQ   I+P+E TLV++ISAC++L AL QG W H Y+ +N LK+N  +GT L+DMY
Sbjct: 205 HLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMY 264

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K GC++ A ++F    ++    +NA+I GFA++G  +++LE++  MK   + P+  T V
Sbjct: 265 SKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIV 324

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
             + AC H GLV+EG   F SM   H +EP  +HYGC++DLLGRAG LKEAEE ++ MPM
Sbjct: 325 VTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPM 384

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P+   W +LLGA K HG+ EMGE   + L+EL+P+  G +VLLSN++AS GRW+DV  V
Sbjct: 385 KPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRV 444

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M   GV K+PG S++E NG +HEFL GD+ HP   EI + + E+ ++L   G+ P T
Sbjct: 445 RMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRT 504

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            EV FD+++E+KE  L  HSE+LAIAF LI  S   PIRI+KNLR+C DCH   K IS A
Sbjct: 505 SEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAA 564

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + R+I+VRDR+RFHHFK GSCSC+D+W
Sbjct: 565 YQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 144/321 (44%), Gaps = 25/321 (7%)

Query: 329 INLQNALIHMYSSCGEITTAEK----LFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +NL + ++     C  + T ++    +   G +      + +++   K  S   A  +F+
Sbjct: 2   LNLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFN 60

Query: 385 AMIEKDVVSWSTMISGYAQH-DQFSETLSLFME-MQHHGIRPDEATLVSVISACTHLVAL 442
            +    +  ++T+IS    H DQ     SL+   + H  ++P+  T  S+  AC     L
Sbjct: 61  HIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWL 120

Query: 443 DQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
             G  +HA++ K      +  +  +L++ Y K G +  +  +F    E  +++WN ++  
Sbjct: 121 QHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAA 180

Query: 502 FAMNGL----------ADKSLE---MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           +A +            AD SLE   +F +M+ S + PNE+T V ++ AC ++G + +G  
Sbjct: 181 YAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG-A 239

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG--ACK 606
             +  +  + L+ N      +VD+  + G L  A +L + +    D   + A++G  A  
Sbjct: 240 WAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELS-DRDTFCYNAMIGGFAVH 298

Query: 607 KHGDHEMGERVGRKLVELQPD 627
            HG+  +      KL +L PD
Sbjct: 299 GHGNQALELYRNMKLEDLVPD 319



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 149/379 (39%), Gaps = 81/379 (21%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR----------- 109
           D F  + L+ F      + ++  S  +F  +  P+   +NTM+ AY Q            
Sbjct: 139 DPFVQNSLLNFYAK---YGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFE 195

Query: 110 --NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
             ++  +A+ L+  M  + +  +  T   L  A +   ++ +G   H +VL+     + +
Sbjct: 196 DADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRF 255

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V   L++MY+ CG L+ A +LFDE                               + +R+
Sbjct: 256 VGTALVDMYSKCGCLNLACQLFDE-------------------------------LSDRD 284

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               N+MI  F   G+  +A  L++ M  +DLV   A I             V+ M    
Sbjct: 285 TFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATI-------------VVTMFACS 331

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
           H  +V+E            L + ++   VH      G+E  +     LI +    G +  
Sbjct: 332 HGGLVEE-----------GLEIFESMKGVH------GMEPKLEHYGCLIDLLGRAGRLKE 374

Query: 348 A-EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS---WSTMISGYAQ 403
           A E+L D     + I W S++      G++E   A    +IE +  +   +  + + YA 
Sbjct: 375 AEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYAS 434

Query: 404 HDQFSETLSLFMEMQHHGI 422
             ++++   + M M+ HG+
Sbjct: 435 IGRWNDVKRVRMLMKDHGV 453


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/674 (35%), Positives = 364/674 (54%), Gaps = 41/674 (6%)

Query: 166 VYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLVSWNSILAGY--VNADNVEEAKFIYN 221
           ++    ++N     G +S+ R  FD  +  V    +   IL  Y  +   N   +K + N
Sbjct: 5   IFCTRQILNSNKFRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSKIVIN 64

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
           +    +   +  ++  +  +G  + A  +F    +K++V ++ +I  Y  N +Y EAL +
Sbjct: 65  EHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSI 124

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M+      D      VL AC+ L  ++ G  VH   VK+G++  + + NAL+ MY  
Sbjct: 125 FQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGK 184

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA---------------------- 379
           CG +  A K+ D     D++SWNSM++GY + G  + A                      
Sbjct: 185 CGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASL 244

Query: 380 ---------------RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
                            +F+ M +K+++SW+ MI+ Y  +   +E +SLF++M+  G++P
Sbjct: 245 SPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T+ S++ AC  L AL  G+ +H YI K  L+ N +L   L+DMY K GC++ A +VF
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVF 364

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
                + V SW +++  +  +G    ++ +F++M  SG  P+ I FV VL AC H GL+D
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           +G  +F  M +++ + P  +H+ CMVDL GRAG ++EA   I+ MPM P+   WGALL A
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ H   ++G      L +L P   G++VLLSNI+A  G W DV+ VR  M + G+ K+P
Sbjct: 485 CRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVP 544

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S +E NG +H FLAGD+ HPQ   I   LD +  K+K  GY P T     D++ E+KE
Sbjct: 545 GISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKE 604

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEKLAI F ++      PIRI KNLR+C DCH A K IS+   R I+VRD +RF
Sbjct: 605 CHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRF 664

Query: 785 HHFKHGSCSCMDFW 798
           HHF +G CSC D+W
Sbjct: 665 HHFSNGICSCGDYW 678



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 245/510 (48%), Gaps = 76/510 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E S +  IF      N   FN M+R+Y+  N+  +A+ ++++ML+     D+YT+P + +
Sbjct: 86  ETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLK 145

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  G  +HD ++K G D+++++ N L+ MY  CG L  ARK+ D+ P  D+VS
Sbjct: 146 ACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVS 205

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKE 253
           WNS++AGY  +   ++A  I  +M   N+      +AS S +V +    NV     +F+ 
Sbjct: 206 WNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFER 265

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M KK+L+SW+ +I+ Y  N M  EA+ LF+ M +  +  D V + S+L AC +L+ +  G
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    K  +   + L+NAL+ MY+ CG +  A  +FD     D++SW SM+S Y + 
Sbjct: 326 RRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G                         GY       + ++LF +M   G  PD    VSV+
Sbjct: 386 G------------------------QGY-------DAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 434 SACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           SAC+H   LDQG+ +      + G+         ++D++ + G V+              
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVE-------------- 460

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
                               E +S +K+  + PNE  +  +L ACR    +D G    + 
Sbjct: 461 --------------------EAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADL 500

Query: 553 MIQEHRLEP-NSKHYGCMVDLLGRAGMLKE 581
           + Q   L P  S +Y  + ++  +AGM K+
Sbjct: 501 LFQ---LAPKQSGYYVLLSNIYAKAGMWKD 527


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/783 (32%), Positives = 403/783 (51%), Gaps = 71/783 (9%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           FK     +I+ +       FK+  + +S M L+G+  D    + +I        F E S 
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASK 312

Query: 84  SFKIFAFLE--SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
            F     L+   PN   +  ++    Q     +A+ +++ M+   V  ++ T    A ++
Sbjct: 313 YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIAS-AVSA 371

Query: 142 ALRLSVFE-GKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
              LS+   G+ IH + +K    DSD+ V N+L++ YA C  +  AR+ F      DLVS
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP---- 255
           W                               N+M+  +  +G+  EA  L  EM     
Sbjct: 432 W-------------------------------NAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           + D+++W+ L++ + Q    + AL  F  M    +  +   +   L+AC  +  +K G  
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   ++  IE    + +ALI MYS C                                S
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCD-------------------------------S 549

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           +E A ++F  +  +DVV W+++IS  AQ  +    L L  EM    +  +  T+VS + A
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C+ L AL QGK IH +I + GL   + +  +LIDMY + G +  +  +F    ++ + SW
Sbjct: 610 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 669

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N +I  + M+G    ++ +F + +  G+ PN ITF  +L AC H GL++EG ++F  M  
Sbjct: 670 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 729

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ ++P  + Y CMVDLL RAG   E  E IE MP  P+ A WG+LLGAC+ H + ++ E
Sbjct: 730 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAE 789

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
              R L EL+P   G +VL++NI+++ GRW+D  ++R +M  RGV K PGCS IE    +
Sbjct: 790 YAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 849

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+ GD +HP + +I   ++ +   +K  GY PDT  V  D+D++EKE +L  HSEK+A
Sbjct: 850 HSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIA 909

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AFGLI+ +   P+RI+KNLR+C DCH+A KFIS+   R+I++RD +RFHHF  G CSC 
Sbjct: 910 LAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCG 969

Query: 796 DFW 798
           D+W
Sbjct: 970 DYW 972



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/630 (26%), Positives = 317/630 (50%), Gaps = 24/630 (3%)

Query: 26  PTINLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           P   + I  + LQKC+         Q+ +Q+++ G+    F  SRL++         +  
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED-- 142

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
            + ++F  +   N F +  +M  Y      ++ I L+ LM+N  V  D++ +P + +A +
Sbjct: 143 -ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 201

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +   GK ++D++L  GF+ +  V  ++++M+  CG +  AR+ F+E    D+  WN 
Sbjct: 202 ELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 261

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP--- 255
           +++GY +    ++A    + M    +    +  N++I  + + G   EA + F EM    
Sbjct: 262 MVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLK 321

Query: 256 --KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
             K ++VSW+ALI+  EQN    EAL +F  M+   V  + + + S +SAC NL++++ G
Sbjct: 322 DFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381

Query: 314 TSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
             +H   +K+  ++  + + N+L+  Y+ C  +  A + F      DL+SWN+M++GY  
Sbjct: 382 REIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 373 CGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            GS E+A  L   M    IE D+++W+ +++G+ Q+      L  F  M   G+ P+  T
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           +   ++AC  +  L  GK IH Y+ +N +++++ +G+ LI MY     ++ A  VF    
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V  WN++I   A +G +  +L++  EM  S V  N +T V  L AC  +  + +G +
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-K 620

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             +  I    L+  +     ++D+ GR G ++++  + + MP   D+ +W  ++     H
Sbjct: 621 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMH 679

Query: 609 GDHEMGERVGRKL--VELQPDHDGFHVLLS 636
           G       + ++   + L+P+H  F  LLS
Sbjct: 680 GFGMDAVNLFQQFRTMGLKPNHITFTNLLS 709


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 340/561 (60%), Gaps = 23/561 (4%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-----SCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           ++  A ++F      ++  ++ALI     SCY     Y + + L+  MI+  ++ D   V
Sbjct: 79  SIGYASKIFSHTQNPNVYLYTALIDGLVLSCY-----YTDGIHLYYQMINSSLVPDSYAV 133

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            SVL AC     +K G  VH+  +K+G+    +++  LI +Y  CG    A ++FD    
Sbjct: 134 TSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPE 193

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D+++   MI+ Y            FD  I KD V W+ MI G  ++ + +  L +F  M
Sbjct: 194 RDVVASTVMINYY------------FDHGI-KDTVCWTAMIDGLVRNGESNRALEVFRNM 240

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q   + P+E T+V V+SAC+ L AL  G+W+ +Y+ K+ +++N  +G  LI+MY + G +
Sbjct: 241 QREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDI 300

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           D A  VF   +EK V ++N++I+GFA++G + +++E+F  + K G TP+ +TFVGVL AC
Sbjct: 301 DEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNAC 360

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GL + G   F+SM +++ +EP  +HYGCMVDLLGR G L+EA   I  M ++PD   
Sbjct: 361 SHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVM 420

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
            GALL ACK HG+ E+ ERV + LV  +    G ++LLSN ++S G+W +  EVR  M  
Sbjct: 421 LGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMRE 480

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
            G+ K PGCS IE N  IHEFL GD  HPQ  +I   L+E+ + L+LEGY P T  V  D
Sbjct: 481 EGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHD 540

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           I++ EKE  L  HSE+LAI +GLI+  P   +R++KNLR+CNDCH   K IS    R+IV
Sbjct: 541 IEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIV 600

Query: 778 VRDRHRFHHFKHGSCSCMDFW 798
           VRDR+RFHHF++G CSC D+W
Sbjct: 601 VRDRNRFHHFENGVCSCGDYW 621



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 153/628 (24%), Positives = 256/628 (40%), Gaps = 137/628 (21%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           LQ C+   Q   I +++I      D F    L++  ++L     + Y+ KIF+  ++PN 
Sbjct: 39  LQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNL---NSIGYASKIFSHTQNPNV 95

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           +++  ++   +        I LY  M+N+++  D+Y    + +A    L++ EG+ +H  
Sbjct: 96  YLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQ 155

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G  S+  +   LI +Y  CG    AR++FDE                         
Sbjct: 156 VLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDE------------------------- 190

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                 MPER+++AS  MI  +   G              KD V W+A+I    +N    
Sbjct: 191 ------MPERDVVASTVMINYYFDHG-------------IKDTVCWTAMIDGLVRNGESN 231

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
            AL +F NM    VM +EV +V VLSAC+ L  ++ G  V +   K  IE    +  ALI
Sbjct: 232 RALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALI 291

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           +MYS CG+I  A+++F+     ++I++NSMI                             
Sbjct: 292 NMYSRCGDIDEAQRVFEQMKEKNVITYNSMI----------------------------- 322

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIRKN 455
              G+A H +  E + LF  +   G  P   T V V++AC+H    + G  I H+  +  
Sbjct: 323 --MGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDY 380

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G++        ++D+  +LG ++                                  E +
Sbjct: 381 GIEPQIEHYGCMVDLLGRLGRLE----------------------------------EAY 406

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           S ++   V P+ +    +L AC+  G ++   R   S++       +S  Y  + +    
Sbjct: 407 SFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACK--NADSGTYILLSNAYSS 464

Query: 576 AGMLKEA--------EELIESMPMSPDVATWGA----LLGACKKHGDHEMGERVGRKLVE 623
           +G  KEA        EE IE  P    +         LLG  +    H   E++ +KL E
Sbjct: 465 SGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLR----HPQKEKIYKKLEE 520

Query: 624 LQP--DHDGF----HVLLSNIHASKGRW 645
           L      +G+     V+L +I  S+  W
Sbjct: 521 LNQILRLEGYTPATEVVLHDIEKSEKEW 548



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
            +S++  C H    +Q   I+A I +N    +  +   L+ +   L  +  A ++F  T+
Sbjct: 35  FISLLQNCKHN---NQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
              V  + ALI G  ++      + ++ +M  S + P+      VL AC     + EG R
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEG-R 150

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +S + +  L  N      +++L G+ G  ++A  + + MP    VA+
Sbjct: 151 EVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAS 199


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 321/536 (59%), Gaps = 31/536 (5%)

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +++I  Y     +  +L +F  M    ++ D     +VL A A L     G  +H + ++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G  C +    AL+H+Y +C                                S+  A  L
Sbjct: 118 MGFICDVYTSTALVHLYCTCL-------------------------------SISDASQL 146

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M E++ V+W+ +I+GY  + +F + +  F  M   G +P E T+V V+SAC+HL A 
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +QGKWIH +I  N L++N  +GT LIDMY K G V    +VF    EK V +WN LI G+
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           AMNG  D +L+ FS M      P+E+TF+GVL AC H GLV EG   F SM Q+  L+P 
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            +HYGCMVDLLGRAG+L+EA ELI+SM + PD   W ALL AC+ HG+ ++GE + ++L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL+P++   +VLLSNI++ + RW +V ++RGMM  RG+ K+PGCS IE N +++EF+A +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
              P+   I   LD + KKLK  GY   T    +DI++EEKE ++  HSEKLA+AFGL+ 
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLN 506

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                 +RI+KNLRIC DCH   K +S  + R IVVRDR+RFHHF  G CSC D+W
Sbjct: 507 SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 44/368 (11%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N+M+R Y+  N    ++ ++ LM   ++  D+ T+P + +A+A       GK+IH  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN---------- 209
            GF  DVY +  L+++Y  C  +S A +LFDE P  + V+WN+++ GY +          
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 210 -----ADNVEEA------------------------KFIYNKMPERNIIASNSMIVLFGR 240
                AD  + +                        +FIY+     N+    ++I ++ +
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G V E  ++F+E+ +K++ +W+ LIS Y  N   + AL  F  M+      DEV  + V
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 301 LSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNL 358
           L AC +  +V  G     ++  + G++  I     ++ +    G +  A +L  +     
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEP 357

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFM 415
           D I W +++      G+ +    +   +IE    +  ++  + + Y++  +++E   L  
Sbjct: 358 DPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRG 417

Query: 416 EMQHHGIR 423
            M   GIR
Sbjct: 418 MMSLRGIR 425



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 128/282 (45%), Gaps = 33/282 (11%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  S +++ L+    ++++A +LF EMP+++ V+W+ALI+ Y  N  + +A+  F  M+
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  E  VV VLSAC++L     G  +H       +   + +  ALI MY+ CG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
             EK+F+     ++ +WN +IS                               GYA + Q
Sbjct: 243 EVEKVFEEIREKNVYTWNVLIS-------------------------------GYAMNGQ 271

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGT 465
               L  F  M     +PDE T + V+ AC H   + +G+W    +++  GL+       
Sbjct: 272 GDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYG 331

Query: 466 TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
            ++D+  + G ++ ALE+      E     W AL+    ++G
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHG 373



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 15/261 (5%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           +I  G I D + ++ L+      L   + S   ++F  +   N   +N ++  Y      
Sbjct: 115 VIQMGFICDVYTSTALVHLYCTCLSISDAS---QLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
            +AI  ++ ML +       T  ++  A +   +  +GK IH+ +       +V+V   L
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI---- 228
           I+MYA CG +    K+F+E    ++ +WN +++GY      + A   +++M   N     
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFM 283
           +    ++     +G V E    F  M ++      +  +  ++    +  + EEAL L  
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 284 NMIDHRVMVDEVVVVSVLSAC 304
           +M    +  D ++  ++L AC
Sbjct: 352 SM---SIEPDPIIWRALLCAC 369


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/723 (35%), Positives = 376/723 (52%), Gaps = 104/723 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK---------------------- 187
           GK +H   +K+      Y +N  I +Y+ CG L+ ARK                      
Sbjct: 27  GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAK 86

Query: 188 ---------LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN----------- 227
                    LFD+ P  DLVS+N++++ Y +      A  +++ M E             
Sbjct: 87  ESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAV 146

Query: 228 --------------------------IIASNSMIVLFGRKGNVAEACRLFKEMPK-KDLV 260
                                     +  +N+++  +G+ G++ +A R+F  M   +D V
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++I  Y Q++   +AL LF  M+   + VD   + SVL+A   L  +  G   H   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           +K G     ++ + LI +YS CG                              G +   R
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCG------------------------------GGMSDCR 296

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPDEATLVSVISACTHL 439
            +F+ + E D+V W+TM+SGY+Q+++F E  L  F +MQ  G RP++ + V VISAC++L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 440 VALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
            +  QGK IH+   K+ +  N I +   LI MY K G + +A  +F    E    S N++
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+A +G+  +SL +F  M +  + P  ITF+ VL AC H G V+EG  +FN M ++  
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP ++HY CM+DLLGRAG L EAE LI  MP +P    W +LLGAC+ HG+ E+  +  
Sbjct: 477 IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++++L+P +   +V+LSN++AS GRW++V  VR  M  RGV K PGCS IE    IH F
Sbjct: 537 NQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE---EKETTLFRHSEKLA 735
           +A D +HP I EI   L+EM+ K+K  GY PD        D     EKE  L  HSEKLA
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLA 656

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AFGLI+     P+ ++KNLRIC DCH A KFIS    REI VRD HRFH FK G CSC 
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 796 DFW 798
           D+W
Sbjct: 717 DYW 719



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L  C     +  G S+H+L +K  I       N  I +YS CG +  A K F    + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           + S+N++I+ Y K      A  LFD + E D+VS++T+IS YA   + +  L LF  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+  D  TL +VI+AC   V L  G+ +H+    +G      +   L+  Y K G +D+
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 480 ALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           A  VF+G    +   SWN++I+ +  +    K+L +F EM + G+  +  T   VL A  
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA-- 249

Query: 539 HMGLVD-EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR-AGMLKEAEELIESMPMSPDVA 596
              L D  G   F+  + +     NS     ++DL  +  G + +  ++ E +   PD+ 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLV 308

Query: 597 TWGALL 602
            W  ++
Sbjct: 309 LWNTMV 314



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY Q     +A+ L++ M+   + VD +T   +  A      +  G   H  ++
Sbjct: 208 WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 159 KAGFDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEA 216
           K GF  + +V + LI++Y+ C G +S  RK+F+E    DLV WN++++GY  N + +E+A
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDA 327

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
              + +M                                        P   I   N++I 
Sbjct: 328 LECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIA 387

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + GN+ +A RLF  M + + VS +++I+ Y Q+ +  E+L LF  M++ ++    + 
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSIT 447

Query: 297 VVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DA 354
            +SVLSACA+   V+ G +  + +  K  IE      + +I +    G+++ AE L    
Sbjct: 448 FISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARM 507

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETL 411
             N   I W S++      G++E A    + +++    +   +  + + YA   ++ E  
Sbjct: 508 PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 412 SLFMEMQHHGIR 423
           ++   M+  G++
Sbjct: 568 TVRKFMRDRGVK 579



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 8/216 (3%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q   Q+I TG   ++   S LI   +       MS   K+F  +  P+  ++NTM+  Y 
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGG--GMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 108 Q-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD- 165
           Q     + A+  ++ M       ++ ++  +  A +   S  +GK IH   LK+   S+ 
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
           + V+N LI MY+ CG+L  AR+LFD     + VS NS++AGY       E+  ++  M E
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 226 RNIIASN----SMIVLFGRKGNVAEACRLFKEMPKK 257
           R I  ++    S++      G V E    F  M +K
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEK 474


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/541 (40%), Positives = 330/541 (60%), Gaps = 4/541 (0%)

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+A+I  Y    +  E+   +  M    V        ++  AC     +  G  VHA  +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 322 KIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            IG     + + N++I +Y  CG +  A K+FD     D++SW  +I  Y K G +E A 
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            LFD +  KD+V+W+ M++GYAQ+ +  E L  F +MQ  G+  DE TL  VISAC  L 
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 441 ALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           A+    WI     ++G     N ++G+ LIDMY K G  D A +VF   +E+ V S++++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I+G+AM+G A  +L++F +M K+ + PN++TF+G+L AC H GLV++G + F  M +   
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + P+  HY CMVDLLGRAG L+EA +L+++MPM P+   WGALLGAC+ HG+ ++ +   
Sbjct: 410 VAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAA 469

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA-NGIIHE 677
            +L +L+P+  G ++LLSNI+AS GRW++V ++R ++  +G  K PGCS  E  NG IH+
Sbjct: 470 NELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHD 529

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F AGD THP+ +EI   L ++ ++L+  GY P+     +D+  +EKE  L  HSEKLA+A
Sbjct: 530 FFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALA 589

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           +GL+     + I+IMKN+RIC DCH      S    REI+VRD  RFHHF +G+CSC +F
Sbjct: 590 YGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNF 649

Query: 798 W 798
           W
Sbjct: 650 W 650



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 268/596 (44%), Gaps = 112/596 (18%)

Query: 1   MTLATKLAHLSS-TIKSSVNAKPIFKPTINLSILETHL----QKCQSFKQFTQILSQMIL 55
           ++  +KL+HL +   + S N  P  +      +LE  L      C  F Q  Q+ + +I 
Sbjct: 8   LSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIR 67

Query: 56  TGLIADTFAASRLIKFSTDL-LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ 114
            GL   ++  ++LI+  T + +P    SY   +F  +  PN F++  M+R Y  + +  +
Sbjct: 68  NGLSQCSYVLTKLIRMLTKVDVPM--GSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSE 125

Query: 115 AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH-VLKAGFDSDVYVNNTLI 173
           +   Y  M  + VG  ++T+  L +A    L++  GK +H   +L  GF SD+YV N++I
Sbjct: 126 STNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMI 185

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           ++Y  CG L  ARK                               ++++M ER++++   
Sbjct: 186 DLYVKCGFLGCARK-------------------------------VFDEMSERDVVSWTE 214

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +IV + + G++  A  LF ++P KD+V+W+A+++ Y QN   +EAL  F  M D  +  D
Sbjct: 215 LIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETD 274

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKL 351
           EV +  V+SACA L  VK    +  +A + G     N  + +ALI MYS CG    A K+
Sbjct: 275 EVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F+     ++ S++SMI GY                               A H +    L
Sbjct: 335 FEVMKERNVFSYSSMILGY-------------------------------AMHGRAHSAL 363

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-NGLKINSILGTTLIDM 470
            LF +M    IRP++ T + ++SAC+H   ++QG+ + A + K  G+  +      ++D+
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDL 423

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
             + GC++ AL++                                  +K   + PN   +
Sbjct: 424 LGRAGCLEEALDL----------------------------------VKTMPMEPNGGVW 449

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEEL 585
             +LGACR  G  D      N +    +LEPN   +Y  + ++   AG  +E  +L
Sbjct: 450 GALLGACRIHGNPDIAQIAANELF---KLEPNGIGNYILLSNIYASAGRWEEVSKL 502



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 7/201 (3%)

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F ++QH   +  E  L+S++  CT      Q K +HA+I +NGL   S + T LI M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCT---LFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 474 LGCVDNA--LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           +     +  L VF          W A+I G+A+ GL  +S   ++ M++ GV P   TF 
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +  AC     +D G +     I       +      M+DL  + G L  A ++ + M  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS- 205

Query: 592 SPDVATWGALLGACKKHGDHE 612
             DV +W  L+ A  K+GD E
Sbjct: 206 ERDVVSWTELIVAYAKYGDME 226


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/591 (39%), Positives = 354/591 (59%), Gaps = 47/591 (7%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
            I++  P   I+  +S IV          A  +F  +P   +  ++ LIS     + +  
Sbjct: 37  LIFHTYPLSRILLISSTIVF-------THALSIFNHIPNPTIFLYNTLISSLANIKPHTH 89

Query: 278 -ALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            A  L+  ++ H  +  +     S+  AC +   ++ G ++H   +K             
Sbjct: 90  IAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKF------------ 137

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
             +  +C     A                ++++ Y KCG V   R LF+ + + D+ SW+
Sbjct: 138 --LEPTCDPFVQA----------------ALLNYYAKCGKVGACRYLFNQISKPDLASWN 179

Query: 396 TMISGYAQH-----DQFS---ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
           +++S Y  +     +  S   E L+LF+EMQ   I+ +E TLV++ISAC  L AL QG W
Sbjct: 180 SILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAW 239

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
            H Y+ K+ LK+N  +GT LIDMY K GC+D A ++F     +    +NA+I GFA++G 
Sbjct: 240 AHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGY 299

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             ++L++F +M   G+ P+++T V  + +C H+GLV+EG   F SM + + +EP  +HYG
Sbjct: 300 GHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYG 359

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
           C+VDLLGRAG L+EAEE + +MPM P+   W +LLGA + HG+ E+GE V + L++L+P+
Sbjct: 360 CLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPE 419

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
             G +VLLSN++AS  RWDDV  VR +M   G+ K+PG S++E  G +HEFL GD+THP+
Sbjct: 420 TSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPR 479

Query: 688 INEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN 747
             EI   L+EM+++L   G+ P TLEV FDI++EEKE  L  HSE+LAIAF LI      
Sbjct: 480 SKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCA 539

Query: 748 PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           PIRI+KNLR+C DCHT++K IS+ ++REI+VRDR+RFHHFK G+CSC D+W
Sbjct: 540 PIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 211/453 (46%), Gaps = 67/453 (14%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PT+ L      L+KC++     Q+ + MI TGLI  T+  SR++  S+ ++     +++ 
Sbjct: 11  PTLQL------LEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIV----FTHAL 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASAL 143
            IF  + +P  F++NT++ +    +     A  LY +++ +  +  + +T+P L +A   
Sbjct: 61  SIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGS 120

Query: 144 RLSVFEGKLIHDHVLK-AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +  +  G+ +H HVLK      D +V   L+N YA CG + A R LF++    DL SWNS
Sbjct: 121 QPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNS 180

Query: 203 ILAGYVN-----ADNVE---EAKFIYNKMPERNIIASN---------------------- 232
           IL+ YV+      ++V    E   ++ +M ++++I +N                      
Sbjct: 181 ILSAYVHNSGAICEDVSLSLEVLTLFIEM-QKSLIKANEVTLVALISACAELGALSQGAW 239

Query: 233 ------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                             ++I ++ + G +  AC+LF ++P +D + ++A+I  +  +  
Sbjct: 240 AHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGY 299

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQN 333
             +AL LF  M    +  D+V +V  + +C+++ +V+ G  V  ++    G+E  +    
Sbjct: 300 GHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYG 359

Query: 334 ALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKD 390
            L+ +    G +  A E++ +     + + W S++      G++E    +   +I  E +
Sbjct: 360 CLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPE 419

Query: 391 VVSWSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
                 ++S  YA  +++ +   +   M+ HGI
Sbjct: 420 TSGNYVLLSNMYASINRWDDVKRVRKLMKDHGI 452


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/653 (36%), Positives = 376/653 (57%), Gaps = 24/653 (3%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N++++ Y   G    AR+LFDE    ++VSWN +++GY+    + EA+ ++  MPERN++
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF------- 282
           +  +M+  + ++G V EA  LF  MP+++ VSW+ +      +   ++A  L+       
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKD 171

Query: 283 ----MNMI----------DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA--VKIGIE 326
                NMI          + R++ DE+   +V++    +T  +    V       ++  E
Sbjct: 172 VVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                  +++  Y+  G I  AE+ F+      +I+ N+MI G+ + G + KAR +FD M
Sbjct: 232 KTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLM 291

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            ++D  +W  MI  Y +     E L LF +MQ  G+RP   +L+S++S C  L +L  G+
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGR 351

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +HA++ +     +  + + L+ MY+K G +  A  VF     K +  WN++I G+A +G
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHG 411

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L +++L++F EM  SG  PN++T + +L AC + G ++EG   F SM  +  + P  +HY
Sbjct: 412 LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHY 471

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            C VD+LGRAG + +A ELIESM + PD   WGALLGACK H   ++ E   +KL E +P
Sbjct: 472 SCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEP 531

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTH 685
           D+ G +VLLS+I+AS+ +W DV  VR  M    V K PGCS IE    +H F  G  + H
Sbjct: 532 DNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNH 591

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           P+   I  ML++    L+  GY+PD   V  D+D+EEK  +L RHSE+LA+A+GL+ +  
Sbjct: 592 PEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPE 651

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIR+MKNLR+C DCH A K IS+  +REI++RD +RFHHF +G CSC D+W
Sbjct: 652 GVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 171/355 (48%), Gaps = 37/355 (10%)

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V E +LI D +     + +V    T+I  Y     +  ARKLF+  P    VSW S+L G
Sbjct: 188 VDEARLIFDEMR----ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLG 243

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y  +  +E+A+  +  MP + +IA N+MIV FG  G +++A R+F  M  +D  +W  +I
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             YE+     EAL LF  M    V      ++S+LS CA L  ++ G  VHA  V+   +
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + + L+ MY  CGE+  A+ +FD   + D+I WNS+ISG                 
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISG----------------- 406

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                         YA H    E L +F EM   G  P++ TL+++++AC++   L++G 
Sbjct: 407 --------------YASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452

Query: 447 WIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALI 499
            I   +        ++   +  +DM  + G VD A+E+    T +   + W AL+
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALL 507



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 24/295 (8%)

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I   S  G+I  A K FD+     + SWNS++SGY   G  ++AR LFD M E++VVSW+
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            ++SGY ++    E  ++F  M    +     +  +++        + + + +   + + 
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNV----VSWTAMVKGYMQEGMVGEAESLFWRMPER 139

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
               N +  T +    +  G +D A +++     K V +   +I G    G  D++  +F
Sbjct: 140 ----NEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIF 195

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            EM++  V    +T+  ++   R    VD   + F  M ++  +   S   G  +     
Sbjct: 196 DEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTL----- 246

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE-RVGRKLVELQPDHD 629
           +G +++AEE  E MPM P +A    ++G        E+GE    R++ +L  D D
Sbjct: 247 SGRIEDAEEFFEVMPMKPVIACNAMIVGF------GEVGEISKARRVFDLMEDRD 295



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+S + ++F  +E  +   +  M++AY ++    +A+ L+  M    V     +   +  
Sbjct: 280 EISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILS 339

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   S+  G+ +H H+++  FD DVYV + L+ MY  CG+L  A+ +FD     D++ 
Sbjct: 340 VCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIM 399

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFKEMP 255
           WNSI++GY +    EEA  I+++MP    + +   ++         G + E   +F+ M 
Sbjct: 400 WNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESME 459

Query: 256 KKDLVS-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            K  V+     +S  +    +    ++A+ L  +M    +  D  V  ++L AC
Sbjct: 460 SKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT---IKPDATVWGALLGAC 510



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           +R+  L    +  +  I    ++G ++ A + F   + K + SWN+++ G+  NGL  ++
Sbjct: 8   LRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEA 67

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
            ++F EM +  V    +++ G++       ++ E    F  M      E N   +  MV 
Sbjct: 68  RQLFDEMSERNV----VSWNGLVSGYIKNRMIVEARNVFELMP-----ERNVVSWTAMVK 118

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
              + GM+ EAE L   MP   +V +W  + G     G  +      RKL ++ P  D
Sbjct: 119 GYMQEGMVGEAESLFWRMPERNEV-SWTVMFGGLIDDGRIDK----ARKLYDMMPVKD 171


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/652 (38%), Positives = 372/652 (57%), Gaps = 48/652 (7%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA----------DNV 213
           +DV+  N++I   A  GD + A + F     L L    S     + A             
Sbjct: 39  TDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQT 98

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            +  F++    + +I  S+++IV++   G + +A ++F E+PK+++VSW+++I  Y+ N 
Sbjct: 99  HQQAFVFGY--QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNG 156

Query: 274 MYEEALVLFMNMI------DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
              +A+ LF +++      D  + +D + +VSV+SAC+ +       S+H+  +K G + 
Sbjct: 157 NALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDR 216

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            +++ N L+  Y+  GE                             G V  AR +FD ++
Sbjct: 217 GVSVGNTLLDAYAKGGE-----------------------------GGVAVARKIFDQIV 247

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGK 446
           +KD VS+++++S YAQ    +E   +F  + +   +  +  TL +V+ A +H  AL  GK
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGK 307

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH  + + GL+ + I+GT++IDMY K G V+ A   F   + K V SW A+I G+ M+G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            A K+LE+F  M  SGV PN ITFV VL AC H GL D G   FN+M     +EP  +HY
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHY 427

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDLLGRAG L++A +LI+ M M PD   W +LL AC+ H + E+ E    +L EL P
Sbjct: 428 GCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDP 487

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            + G+++LLS+I+A  GRW DV  VR  M  RG+VK PG S++E NG +H FL GD  HP
Sbjct: 488 SNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHP 547

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
           Q  +I   L E+ +KL   GY  +T  V  D+D+EEKE TL  HSEKLAIAFG++   P 
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPG 607

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + + ++KNLR+C+DCH   K IS+  DRE VVRD  RFHHFK G CSC D+W
Sbjct: 608 STVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/550 (23%), Positives = 236/550 (42%), Gaps = 118/550 (21%)

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
           +++  + F +N+++    +     +A+  +  M   ++     ++P   +A +  L +F 
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFS 94

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-- 207
           GK  H      G+ SD++V++ LI MY+ CG L  ARK+FDE P  ++VSW S++ GY  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 208 -----------------------------------------VNADNVEEA--KFIYNKMP 224
                                                    V A  + E+   F+  +  
Sbjct: 155 NGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGF 214

Query: 225 ERNIIASNSMIVLF--GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           +R +   N+++  +  G +G VA A ++F ++  KD VS+++++S Y Q+ M  EA  +F
Sbjct: 215 DRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVF 274

Query: 283 MNMIDHRVMVDEVVVVS-VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
             +I  +V+    + +S VL A ++   ++ G  +H   +++G+E  + +  ++I MY  
Sbjct: 275 RRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCK 334

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           CG + TA   FD   N ++ SW +MI+GY   G   KA  LF AMI+             
Sbjct: 335 CGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS------------ 382

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKIN 460
                              G+RP+  T VSV++AC+H    D G  W +A   + G+   
Sbjct: 383 -------------------GVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGV--- 420

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
                                       E G+  +  ++      G   K+ ++  +MK 
Sbjct: 421 ----------------------------EPGLEHYGCMVDLLGRAGFLQKAYDLIQKMK- 451

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579
             + P+ I +  +L ACR    V+       S+ +   L+P N  +Y  +  +   +G  
Sbjct: 452 --MEPDSIIWSSLLAACRIHKNVELAE---ISVARLFELDPSNCGYYMLLSHIYADSGRW 506

Query: 580 KEAEELIESM 589
           K+ E +  +M
Sbjct: 507 KDVERVRMTM 516



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 77/358 (21%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN---YTYPLLA--QA 140
           KIF  +   +   +N++M  Y Q  +  +A  +++ ++   V   N    +  LLA   +
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHS 300

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            ALR+    GK IHD V++ G + DV V  ++I+MY  CG +  AR  FD     ++ SW
Sbjct: 301 GALRI----GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSW 356

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
            +++AGY                               G  G+ A+A  LF         
Sbjct: 357 TAMIAGY-------------------------------GMHGHAAKALELFPA------- 378

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHAL 319
                                   MID  V  + +  VSVL+AC++  +   G    +A+
Sbjct: 379 ------------------------MIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAM 414

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEK 378
             + G+E  +     ++ +    G +  A  L        D I W+S+++      +VE 
Sbjct: 415 KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVEL 474

Query: 379 ARALFDAMIEKDV--VSWSTMISG-YAQHDQFSETLSLFMEMQHHG-IRPDEATLVSV 432
           A      + E D     +  ++S  YA   ++ +   + M M++ G ++P   +L+ +
Sbjct: 475 AEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLEL 532


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/723 (35%), Positives = 376/723 (52%), Gaps = 104/723 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK---------------------- 187
           GK +H   +K+      Y +N  I +Y+ CG L+ ARK                      
Sbjct: 27  GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAK 86

Query: 188 ---------LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN----------- 227
                    LFD+ P  DLVS+N++++ Y +      A  +++ M E             
Sbjct: 87  ESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAV 146

Query: 228 --------------------------IIASNSMIVLFGRKGNVAEACRLFKEMPK-KDLV 260
                                     +  +N+++  +G+ G++ +A R+F  M   +D V
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++I  Y Q++   +AL LF  M+   + VD   + SVL+A   L  +  G   H   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           +K G     ++ + LI +YS CG                              G +   R
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCG------------------------------GGMSDCR 296

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPDEATLVSVISACTHL 439
            +F+ + E D+V W+TM+SGY+Q+++F E  L  F +MQ  G RP++ + V VISAC++L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 440 VALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
            +  QGK IH+   K+ +  N I +   LI MY K G + +A  +F    E    S N++
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSM 416

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+A +G+  +SL +F  M +  + P  ITF+ VL AC H G V+EG  +FN M ++  
Sbjct: 417 IAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFN 476

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP ++HY CM+DLLGRAG L EAE LI  MP +P    W +LLGAC+ HG+ E+  +  
Sbjct: 477 IEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAA 536

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            ++++L+P +   +V+LSN++AS GRW++V  VR  M  RGV K PGCS IE    IH F
Sbjct: 537 NQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE---EKETTLFRHSEKLA 735
           +A D +HP I EI   L+EM+ K+K  GY PD        D     EKE  L  HSEKLA
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLA 656

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AFGLI+     P+ ++KNLRIC DCH A KFIS    REI VRD HRFH FK G CSC 
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 796 DFW 798
           D+W
Sbjct: 717 DYW 719



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L  C     +  G S+H+L +K  I       N  I +YS CG +  A K F    + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           + S+N++I+ Y K      A  LFD + E D+VS++T+IS YA   + +  L LF  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+  D  TL +VI+AC   V L  G+ +H+    +G      +   L+  Y K G +D+
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 480 ALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
           A  VF+G    +   SWN++I+ +  +    K+L +F EM + G+  +  T   VL A  
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA-- 249

Query: 539 HMGLVD-EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR-AGMLKEAEELIESMPMSPDVA 596
              L D  G   F+  + +     NS     ++DL  +  G + +  ++ E +   PD+ 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLV 308

Query: 597 TWGALL 602
            W  ++
Sbjct: 309 LWNTMV 314



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY Q     +A+ L++ M+   + VD +T   +  A      +  G   H  ++
Sbjct: 208 WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 159 KAGFDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEA 216
           K GF  + +V + LI++Y+ C G +S  RK+F+E    DLV WN++++GY  N + +E+A
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDA 327

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
              + +M                                        P   I   N++I 
Sbjct: 328 LECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIA 387

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + GN+ +A RLF  M + + VS +++I+ Y Q+ +  E+L LF  M++ ++    + 
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSIT 447

Query: 297 VVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DA 354
            +SVLSACA+   V+ G +  + +  K  IE      + +I +    G+++ AE L    
Sbjct: 448 FISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARM 507

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETL 411
             N   I W S++      G++E A    + +++    +   +  + + YA   ++ E  
Sbjct: 508 PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVA 567

Query: 412 SLFMEMQHHGIR 423
           ++   M+  G++
Sbjct: 568 TVRKFMRDRGVK 579



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 8/216 (3%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q   Q+I TG   ++   S LI   +       MS   K+F  +  P+  ++NTM+  Y 
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGG--GMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 108 Q-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSD- 165
           Q     + A+  ++ M       ++ ++  +  A +   S  +GK IH   LK+   S+ 
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
           + V+N LI MY+ CG+L  AR+LFD     + VS NS++AGY       E+  ++  M E
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 226 RNIIASN----SMIVLFGRKGNVAEACRLFKEMPKK 257
           R I  ++    S++      G V E    F  M +K
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEK 474


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/550 (41%), Positives = 328/550 (59%), Gaps = 32/550 (5%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF ++  KD++ ++ +   Y ++     A  LF  ++   ++ D+    S+L ACA+   
Sbjct: 86  LFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKA 145

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  +H  AVK+G+   I +   LI+MY+ C ++                        
Sbjct: 146 LREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNA---------------------- 183

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                    AR +FD M +  +VS++ +I+GYA+  Q +E LSLF E+Q   I P + T+
Sbjct: 184 ---------ARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTM 234

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +SVI +C  L ALD GKWIH Y++K G      + T LIDM+ K G + +A+ +F G   
Sbjct: 235 LSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRV 294

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   +W+A+I+ FA +G   K++ MF EMK+ GV P+EITF+G+L AC H GLV++G  +
Sbjct: 295 RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGY 354

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F SM + + + P  KHYGCMVDLLGRAG L EA   ++ + +      W  LL AC  HG
Sbjct: 355 FYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHG 414

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + EM +RV  ++ EL   H G +V+LSN++A  GRW+DV  +R +M  RGVVK+PGCS +
Sbjct: 415 NVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSV 474

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDIDQEEKETTLF 728
           E N ++HEF +GD  H    E+   LDE+ K++KL GY PDT L    D+++E KE  L 
Sbjct: 475 EVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLR 534

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AFGL+   P   IR+ KNLRIC DCH AAK IS  F R+IV+RD  RFH F+
Sbjct: 535 YHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFE 594

Query: 789 HGSCSCMDFW 798
            G CSC DFW
Sbjct: 595 DGKCSCGDFW 604



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 227/507 (44%), Gaps = 66/507 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KC S  +  QI +  I T L +D    ++LI F T       M ++  +F  +   + 
Sbjct: 36  LSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDI 95

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +FN M R Y + N P  A  L+  +L + +  D+YT+  L +A A   ++ EG  +H  
Sbjct: 96  ILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCF 155

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G + ++Y+  TLINMYA C D++AAR +FDE     +VS+N+I+ GY  +    EA
Sbjct: 156 AVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEA 215

Query: 217 KFIYNKMPERNIIASN---------------------------------------SMIVL 237
             ++ ++   NI  ++                                       ++I +
Sbjct: 216 LSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDM 275

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           F + G++ +A  +F+ M  +D  +WSA+I  +  +    +A+ +F  M    V  DE+  
Sbjct: 276 FAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITF 335

Query: 298 VSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + +L AC++  +V+ G    ++++   GI   I     ++ +    G +  A    D   
Sbjct: 336 LGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVD--- 392

Query: 357 NLDL----ISWNSMISGYLKCGSVEKARALFDAMIEKDVV---SWSTMISGYAQHDQFSE 409
            L++    I W +++S     G+VE A+ + + + E D      +  + + YA+  ++ +
Sbjct: 393 KLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWED 452

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
              L   M+  G        V  +  C+   +++    +H +   +G+   S+     +D
Sbjct: 453 VNHLRKLMKDRG--------VVKVPGCS---SVEVNNVVHEFFSGDGVHCVSVELRRALD 501

Query: 470 MYMK----LGCVDNALEVFHG-TEEKG 491
             MK    +G V +   V+H   EE+G
Sbjct: 502 ELMKEIKLVGYVPDTSLVYHADMEEEG 528



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 8/264 (3%)

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A  LFD +++KD++ ++ M  GYA+ +      SLF E+   G+ PD+ T  S++ A
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C    AL +G  +H +  K GL  N  +  TLI+MY +   ++ A  VF   E+  + S+
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           NA+I G+A +   +++L +F E++ S + P ++T + V+ +C  +G +D G +  +  ++
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG-KWIHEYVK 258

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH---- 611
           +   +   K    ++D+  + G L +A  + E M +  D   W A++ A   HGD     
Sbjct: 259 KKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFATHGDGLKAI 317

Query: 612 EMGERVGRKLVELQPDHDGFHVLL 635
            M E + R+ V  +PD   F  LL
Sbjct: 318 SMFEEMKREGV--RPDEITFLGLL 339


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/509 (44%), Positives = 326/509 (64%), Gaps = 6/509 (1%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      +L +   L +V     +HAL +K+G   +    NAL+  Y +      A ++F
Sbjct: 100 DHFTFPQILPSAQPLHLV---AQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVF 156

Query: 353 DAGHN-LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
             G   LD++SW +M+ G LK G  + AR LFD M E+++VSW+ M+SGY +  +F + L
Sbjct: 157 RGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDAL 216

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            +F EM+  G+  +     + + ACT   AL +G+ +H ++ ++G++++  L T ++DMY
Sbjct: 217 EVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMY 276

Query: 472 MKLGCVDNALEVFHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            K GCV+ A  VF       KG+++WN +I GFA++G    +L++F  M++ GV P+++T
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVT 336

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            V VL AC H G++ EG  +FN + Q + +EP  +HYGCMVDL GRAG L+EA+++I+ M
Sbjct: 337 LVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           PM PDV   GAL GA K HGD ++GE +G +++EL P + G +VLL+N+ A+ GRW+DV 
Sbjct: 397 PMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVA 456

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR +M  R V K  G S+IE  G + EF  G   HP+  E+  M  +M +K++ EGY P
Sbjct: 457 RVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVP 516

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           DT +V   I +EEKET L  HSEKLAIAFGL+   P + +RI KNLR+C DCH A KF+S
Sbjct: 517 DTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVS 576

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R F+R+IVVRDR+RFHHFK G CSC D+W
Sbjct: 577 RVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/603 (39%), Positives = 348/603 (57%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           +++ +     + N+E+A+ ++  +            NS+I L+ + G+V EA ++F EM 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +KD+VSW++LI+ Y QN+M EEA+ L   M+  R   +     S+L A         G  
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HALAVK      + + +AL+ MY+                               +CG 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYA-------------------------------RCGM 202

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +ISG+A+       L  F EM  +G      T  SV S+
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              L AL+QGKW+HA++ K+  K+ +  G TL+DMY K G + +A +VF   ++K + +W
Sbjct: 263 IARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTW 322

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N ++  FA  GL  +++  F EM+KSG+  N++TF+ +L AC H GLV EG R+F  M++
Sbjct: 323 NTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMK 381

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP   H+  +V LLGRAG+L  A   I  MP+ P  A WGALL AC+ H + ++G+
Sbjct: 382 EYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + EL PD  G  VLL NI+AS G+WD    VR +M   GV K P CS +E    +
Sbjct: 442 FAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSV 501

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI  M  +++KK++ EGY PD   V   +D +E+E  L  HSEKLA
Sbjct: 502 HMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLA 561

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A K+IS+ F REIVVRD +RFHHF +GSCSC 
Sbjct: 562 LAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCA 621

Query: 796 DFW 798
           D+W
Sbjct: 622 DYW 624



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 192/457 (42%), Gaps = 76/457 (16%)

Query: 94  PNGFIFNTMMRAYIQ---RNVPQQAICLYKLML--NNNVGVDNYTYPLLAQASALRLSVF 148
           PN  +     R Y       VP  +  L  L L     +      Y     A A   ++ 
Sbjct: 9   PNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLE 68

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           + + +H H+  + F  D +++N+LI++Y  CG +  ARK+FDE    D+VSW S++AGY 
Sbjct: 69  DARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYA 128

Query: 209 NADNVEEA----------KFIYNKMP-----------------------------ERNII 229
             D  EEA          +F  N                                  ++ 
Sbjct: 129 QNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVY 188

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             ++++ ++ R G +  A  +F ++  K+ VSW+ALIS + +    E AL+ F  M+ + 
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
                    SV S+ A L  ++ G  VHA  +K   +      N L+ MY+  G +  A 
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDAR 308

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           K+FD   + DL++WN+                               M++ +AQ+    E
Sbjct: 309 KVFDRVDDKDLVTWNT-------------------------------MLTAFAQYGLGKE 337

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            +S F EM+  GI  ++ T + +++AC+H   + +GK     +++  L+       T++ 
Sbjct: 338 AVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVA 397

Query: 470 MYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMN 505
           +  + G ++ AL  +F    E   + W AL+    M+
Sbjct: 398 LLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMH 434



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 135/284 (47%), Gaps = 39/284 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   +   + +++  Y Q ++P++AI L   ML      + +T+  L +A+    
Sbjct: 107 KVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA 166

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G+ IH   +K  +  DVYV + L++MYA CG +  A  +FD+    + VSWN++++
Sbjct: 167 DSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALIS 226

Query: 206 GYVNADN-----------------------------------VEEAKFIYNKM----PER 226
           G+    +                                   +E+ K+++  M     + 
Sbjct: 227 GFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM 286

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
              A N+++ ++ + G++ +A ++F  +  KDLV+W+ +++ + Q  + +EA+  F  M 
Sbjct: 287 TAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMR 346

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
              + +++V  + +L+AC++  +VK G     +  +  +E  I+
Sbjct: 347 KSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEID 390



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 4/183 (2%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  +  +F  L+S NG  +N ++  + ++   + A+  +  ML N     ++TY  +  +
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   ++ +GK +H H++K+      +  NTL++MYA  G +  ARK+FD     DLV+W
Sbjct: 263 IARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTW 322

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPK 256
           N++L  +      +EA   + +M +  I  +      ++      G V E  R F+ M +
Sbjct: 323 NTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE 382

Query: 257 KDL 259
            DL
Sbjct: 383 YDL 385



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 4/192 (2%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P      + I+AC     L+  + +HA++  +    ++ L  +LI +Y K G V  A 
Sbjct: 47  LAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEAR 106

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF     K + SW +LI G+A N + ++++ +   M K    PN  TF  +L A     
Sbjct: 107 KVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAG--A 164

Query: 542 LVDEG-HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
             D G  R  +++  +     +      ++D+  R GM+  A  + + +  S +  +W A
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLD-SKNGVSWNA 223

Query: 601 LLGACKKHGDHE 612
           L+    + GD E
Sbjct: 224 LISGFARKGDGE 235


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/720 (36%), Positives = 403/720 (55%), Gaps = 79/720 (10%)

Query: 26  PTINLSILE--THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI-EMS 82
           PT  LS     ++L+ C+S     QI +Q+   GL  D  + ++L+ F TD  PF   ++
Sbjct: 31  PTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTD--PFNGNLN 88

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+ K+F ++  P                     + +Y L++       NY          
Sbjct: 89  YAEKMFKYIRYP--------------------CLLIYNLIIKAFAKKGNYK--------- 119

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
            R  V   KL  D     G   D +    +       G++S A KL              
Sbjct: 120 -RTLVLFSKLRED-----GLWPDNFTYPFVFKAIGYLGEVSKAEKL-------------- 159

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
              G V    +E   ++            NS+I ++ +         LF EMP +D++SW
Sbjct: 160 --RGLVTKTGLEFDTYV-----------RNSLIDMYAQLALTDVMKMLFDEMPDRDVISW 206

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           + +IS Y +   +E+A+ +F  M +   +M DE  VVS LSAC  L  ++ G  +H   V
Sbjct: 207 NVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-V 265

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           +  ++    + NAL+ MY  CG ++ A  +F+   + ++I W +M+SGY  CG +E+AR 
Sbjct: 266 RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARE 325

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF+    +DVV W+ MI+GY Q ++F E ++LF EMQ   ++PD+  +VS+++ C    A
Sbjct: 326 LFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGA 385

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           ++QGKWIH +I +N + I++++GT LI+MY K G ++ ALE+F+G   K  +SW ++I G
Sbjct: 386 IEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICG 445

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            AMNG   K+LE+FS+MK++GV P++ITF+GVL AC H GLV+EG + FNSM  E++++P
Sbjct: 446 LAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKP 505

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALLGACKKHGDHEMGERVG 618
             +HYGC+VDLLGRAG+L EAEELI+ +P    +  V  +G+LL AC+ +G+ EMGERV 
Sbjct: 506 KVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVA 565

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           ++LV+ +      H LL+NI+A   RW+DV +VR  M   GV K PGCS IE + IIHEF
Sbjct: 566 KQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEF 625

Query: 679 LAGDRTHPQINEIDNMLDEMAKKL----KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
            +G  +HP++ EI  ML+ MAK L    K E    D + + FD   E+  ++ FR++E++
Sbjct: 626 FSGHPSHPEMREIYYMLNIMAKPLLGSAKNEMEGEDLVGMTFD---EQGCSSGFRYTEEI 682


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/572 (41%), Positives = 345/572 (60%), Gaps = 15/572 (2%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEV 295
           +   G +  A  L +  P    V +++ I  +    ++  AL L   M+   H ++    
Sbjct: 66  YAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAH 125

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            + + L AC  L V   G ++H  AVK+ +     +  AL+ MY+  GE   A  LFD G
Sbjct: 126 TLSASLPACGCLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFD-G 181

Query: 356 HNLD--LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
              D  ++S  +M+S Y K G ++ AR LFDA+  KD+V W+ M+ GY QH + SE L L
Sbjct: 182 MRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRL 241

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI----RKNGLKINSILGTTLID 469
           F +M   G+ PDE ++V  +SA   L   + G+W+H+++    R+  +++N+ +GT L+D
Sbjct: 242 FRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVD 301

Query: 470 MYMKLGCVDNALEVFH---GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           MY K G ++ A+ VF    G  ++ V +WNA+I G+AM+G + ++LE F +++  G+ P 
Sbjct: 302 MYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPT 361

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           +ITF+GVL AC H GLVDEG   F +M +E+ + P  +HYGCMVDLLGRAG ++EA +L+
Sbjct: 362 DITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLV 421

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           +SM   PD A W +LLGAC+ H +  +G+RV   LV     + G +VLLSN++A+ G+W 
Sbjct: 422 QSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWR 481

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V  VR MM   GV K PGCS +E    + EF+AGDR+HP+  EI   L+E+    +  G
Sbjct: 482 EVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARG 541

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           + P T  V  D+D   KE  L  HSEKLA+AFGLI+  P   I+I+KNLR C DCH   K
Sbjct: 542 HVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLK 601

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +S A  R+IV RDR+RFHHF  GSCSC D+W
Sbjct: 602 LVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 97/514 (18%), Positives = 193/514 (37%), Gaps = 96/514 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C S  +  +I +  +   +  D   A RL +          +  +  +      P  
Sbjct: 31  LAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYA---ASGRLDLAVALLRRTPDPTA 87

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR-LSVFEGKLIHD 155
             + + + A+  R + + A+ L   ML +  G+    + L A   A   L+V  G+ +H 
Sbjct: 88  VFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAV--GRALHG 145

Query: 156 HVLKAGFDSDVYVNNTLINMY--------------------------------AVCGDLS 183
           + +K     + YV   L+ MY                                A  G L 
Sbjct: 146 YAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLD 205

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER----------- 226
            AR LFD  P  DLV WN+++ GY       EA  ++ +M      P+            
Sbjct: 206 DARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVA 265

Query: 227 --------------------------NIIASNSMIVLFGRKGNVAEACRLFKEM---PKK 257
                                     N     +++ ++ + G++ EA  +F+++     +
Sbjct: 266 QLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDR 325

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV- 316
           D+V+W+A+I+ Y  +    EAL  F  +    +   ++  + VL+AC++  +V  G ++ 
Sbjct: 326 DVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALF 385

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL----DLISWNSMISGYLK 372
            A+  + GI   +     ++ +    G +   E+ FD   ++    D   W S++     
Sbjct: 386 AAMEEEYGIVPKVEHYGCMVDLLGRAGRV---EEAFDLVQSMKAKPDAAMWASLLGACRL 442

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHHGIRPDEA-T 428
             ++   + + D ++   + +  T +   + YA   ++ E   +   M+  G++ +   +
Sbjct: 443 HKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCS 502

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
            V V       VA D+     A I     ++NSI
Sbjct: 503 AVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSI 536


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 333/567 (58%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            S++ L+ + G +  A R+F EMP    V W+ALI+ Y       EA+ +  N   + + 
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D    V VL+ACA +  +  G +V   A + G+                      A+ +
Sbjct: 170 PDSFTAVRVLTACARIADLATGETVWRAAEQEGV----------------------AQSV 207

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F A   +DL         Y+KCG + KAR +FD M  KD V+W  M+ GYA +    E L
Sbjct: 208 FVATAAVDL---------YVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREAL 258

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF+ MQ  G++PD   +   +SACT L ALD G+     +  +    N +LGT LIDMY
Sbjct: 259 DLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMY 318

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G    A  VF    +K +  WNA+I+G  M G    +  +  +M+KSGV  N+ TF+
Sbjct: 319 AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 378

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G+L +C H GL+ +G R+F++M + + + P  +HYGCMVDLL RAG+L+EA +L++ MPM
Sbjct: 379 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 438

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             +    GALLG CK H + E+ E V ++L+ L+P + G +V+LSNI++++GRW+D  ++
Sbjct: 439 PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 498

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M  +GV K+P CS +E  G +HEF  GD++HP  ++I   LDE+  ++K  GY P T
Sbjct: 499 RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 558

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V FD++ EEKE TL  HSEKLAIAF L+   P   IR+ KNLR+C+DCHTA K +SR 
Sbjct: 559 EVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRI 618

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REI+VRD +RFH F+ GSCSC D+W
Sbjct: 619 THREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 149/356 (41%), Gaps = 75/356 (21%)

Query: 133 TYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           T P+ L  AS L   +  G+ +H   LK    ++ +V  +L+++YA CG L  A+++FDE
Sbjct: 72  TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 131

Query: 192 SPVLDLVSWNSILAGYVNADNVEEA------KFIYNKMPE-------------------- 225
            P    V W +++  Y++A ++ EA       F     P+                    
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 191

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                        +++  + + + L+ + G +A+A  +F +M  KD V+W A++  Y  N
Sbjct: 192 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 251

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF+ M    +  D   V   LSAC  L  +  G    A+ +    E   N  
Sbjct: 252 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR--QAIRMVDWDEFLDNPV 309

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  ALI MY+ CG    A  +F      D+I WN+MI G                     
Sbjct: 310 LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL-------------------- 349

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                    G   H++ +   +L  +M+  G++ ++ T + ++ +CTH   +  G+
Sbjct: 350 ---------GMTGHEKIA--FALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 394



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/386 (18%), Positives = 165/386 (42%), Gaps = 54/386 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+   +  ++ AY+     ++A+ + +    N +  D++T   +  A A   
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G+ +     + G    V+V    +++Y  CG+++ AR++FD+    D V+W +++ 
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 246

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY +  +  EA  ++  M                                          
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N +   ++I ++ + G+  EA  +F++M KKD++ W+A+I         + A  L   M 
Sbjct: 307 NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQME 366

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V +++   + +L +C +  +++ G    H +     I   I     ++ + S  G +
Sbjct: 367 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLL 426

Query: 346 TTAEKLFDAGHNLDL-ISWNSMISGYLKCG-SVEKARALFDAMIEKDVV--SWST----M 397
             A +L D     D+ +  N++I G L  G  + +   L + ++++ ++   W++    M
Sbjct: 427 QEAHQLVD-----DMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVM 481

Query: 398 ISG-YAQHDQFSETLSLFMEMQHHGI 422
           +S  Y+   ++ +   L ++M+  G+
Sbjct: 482 LSNIYSNRGRWEDAAKLRLDMKAKGV 507



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 424 PDEATLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           P   T+   + + + L   L  G+ +HA   K     N  + T+L+ +Y K G +  A  
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF          W ALI  +   G   +++ +      +G+ P+  T V VL AC  +  
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           +  G   + +  QE  +  +       VDL  + G + +A E+ + M    D   WGA++
Sbjct: 188 LATGETVWRAAEQEG-VAQSVFVATAAVDLYVKCGEMAKAREVFDKM-RHKDAVAWGAMV 245

Query: 603 GACKKHG 609
           G    +G
Sbjct: 246 GGYASNG 252


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 321/536 (59%), Gaps = 31/536 (5%)

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +++I  Y     +  +L +F  M    ++ D     +VL A A L     G  +H + ++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G  C +    AL+H+Y +C                                S+  A  L
Sbjct: 118 MGFICDVYTSTALVHLYCTCL-------------------------------SISDASQL 146

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
           FD M E++ V+W+ +I+GY  + +F + +  F  M   G +P E T+V V+SAC+HL A 
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
           +QGKWIH +I  N L++N  +GT LIDMY K G V    +VF    EK V +WN LI G+
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           AMNG  D +L+ FS M      P+E+TF+GVL AC H GLV EG   F SM Q+  L+P 
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            +HYGCMVDLLGRAG+L+EA ELI+SM + PD   W ALL AC+ HG+ ++GE + ++L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL+P++   +VLLSNI++ + RW +V ++RGMM  RG+ K+PGCS IE N +++EF+A +
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASN 446

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
              P+   I   LD + KKLK  GY   T    +DI++EEKE ++  HSEKLA+AFGL+ 
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLN 506

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                 +RI+KNLRIC DCH   K +S  + R IVVRDR+RFHHF  G CSC D+W
Sbjct: 507 SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 175/383 (45%), Gaps = 45/383 (11%)

Query: 86  KIFA-FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +IF+ +  S N    N+M+R Y+  N    ++ ++ LM   ++  D+ T+P + +A+A  
Sbjct: 43  RIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQL 102

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                GK+IH  V++ GF  DVY +  L+++Y  C  +S A +LFDE P  + V+WN+++
Sbjct: 103 CDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALI 162

Query: 205 AGYVN---------------ADNVEEA------------------------KFIYNKMPE 225
            GY +               AD  + +                        +FIY+    
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLR 222

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            N+    ++I ++ + G V E  ++F+E+ +K++ +W+ LIS Y  N   + AL  F  M
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +      DEV  + VL AC +  +V  G     ++  + G++  I     ++ +    G 
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 345 ITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISG 400
           +  A +L  +     D I W +++      G+ +    +   +IE    +  ++  + + 
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNI 402

Query: 401 YAQHDQFSETLSLFMEMQHHGIR 423
           Y++  +++E   L   M   GIR
Sbjct: 403 YSRERRWAEVGKLRGMMNLRGIR 425



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 68/360 (18%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++  S +++ L+    ++++A +LF EMP+++ V+W+ALI+ Y  N  + +A+  F  M+
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  E  VV VLSAC++L     G  +H       +   + +  ALI MY+ CG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
             EK+F+     ++ +WN +IS                               GYA + Q
Sbjct: 243 EVEKVFEEIREKNVYTWNVLIS-------------------------------GYAMNGQ 271

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
               L  F  M     +PDE T + V+ AC H   + +G+W                   
Sbjct: 272 GDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRW------------------Q 313

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            + M  + G             +  +  +  ++      GL +++LE+   M    + P+
Sbjct: 314 FMSMKQQFGL------------QPRIEHYGCMVDLLGRAGLLEEALELIQSM---SIEPD 358

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEEL 585
            I +  +L ACR  G    G      +I+   LEPN+ ++Y  + ++  R     E  +L
Sbjct: 359 PIIWRALLCACRVHGNTKLGEYIIKRLIE---LEPNNGENYVLLSNIYSRERRWAEVGKL 415



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 15/261 (5%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           +I  G I D + ++ L+      L   + S   ++F  +   N   +N ++  Y      
Sbjct: 115 VIQMGFICDVYTSTALVHLYCTCLSISDAS---QLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
            +AI  ++ ML +       T  ++  A +   +  +GK IH+ +       +V+V   L
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI---- 228
           I+MYA CG +    K+F+E    ++ +WN +++GY      + A   +++M   N     
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFM 283
           +    ++     +G V E    F  M ++      +  +  ++    +  + EEAL L  
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 284 NMIDHRVMVDEVVVVSVLSAC 304
           +M    +  D ++  ++L AC
Sbjct: 352 SM---SIEPDPIIWRALLCAC 369


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/718 (36%), Positives = 384/718 (53%), Gaps = 83/718 (11%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           ML + V  +NYT+P   +A +       G+ IH H + AG  +D++V+  L++MY  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA--KFIYNKM---------------- 223
           L  A  +F   P  DLV+WN++LAGY +      A    +  +M                
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 224 -------------------------PERN--------IIASNSMIVLFGRKGNVAEACRL 250
                                    P RN        ++   +++ ++ + G++  A R+
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTV 309
           F  MP ++ V+WSALI  +       +A +LF  M+   +  +    + S L ACA+L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  +HAL  K G+                               + DL + NS++S 
Sbjct: 241 LRMGEQLHALLAKSGV-------------------------------HADLTAGNSLLSM 269

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G +++A ALFD M  KD VS+S ++SGY Q+ +  E   +F +MQ   + PD AT+
Sbjct: 270 YAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATM 329

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VS+I AC+HL AL  G+  H  +   GL   + +   LIDMY K G +D + +VF+    
Sbjct: 330 VSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 389

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + + SWN +I G+ ++GL  ++  +F EM   G  P+ +TF+ +L AC H GLV EG   
Sbjct: 390 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 449

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F+ M   + L P  +HY CMVDLL R G L EA E I+SMP+  DV  W ALLGAC+ + 
Sbjct: 450 FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 509

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++G++V R + EL P+  G  VLLSNI+++ GR+D+  EVR +   +G  K PGCS I
Sbjct: 510 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 569

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E NG +H F+ GD++HPQ  EI   LD +   +K  GY PDT  V  D+++EEKE  L  
Sbjct: 570 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 629

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
           HSEKLAIA+G++++S    I + KNLR+C DCHT  K IS    R I+VRD +RFHHF
Sbjct: 630 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 48/275 (17%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+ ++F  + + N   ++ ++  ++  +   QA  L+K ML   +   + T    + ASA
Sbjct: 176 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT----SIASA 231

Query: 143 LRLS-----VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           LR       +  G+ +H  + K+G  +D+   N+L++MYA  G +  A  LFDE  V D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI----------------------------- 228
           VS++++++GYV     EEA  ++ KM   N+                             
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 229 -----IAS-----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                +AS     N++I ++ + G +  + ++F  MP +D+VSW+ +I+ Y  + + +EA
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
             LF+ M +     D V  + +LSAC++  +V  G
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEG 446


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/790 (33%), Positives = 421/790 (53%), Gaps = 86/790 (10%)

Query: 56  TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
           T +++D F  + LI        F+E +   K+F  +   N   +N++M A ++  V +++
Sbjct: 225 TKVLSDVFVGNALIAMYGKF-GFVESA--VKVFDKMPQRNLVSWNSVMYACLENGVFEES 281

Query: 116 ICLYKLMLNNNVGV--DNYTY----PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
             L+K +LN + G+  D  T     PL A+   +RL    G + H   LK G   ++ VN
Sbjct: 282 YGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRL----GMVFHGLALKLGLCGELKVN 337

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY---------------------V 208
           ++L++MY+ CG L  AR LFD +   +++SWNS++ GY                     V
Sbjct: 338 SSLLDMYSKCGYLCEARVLFDTNEK-NVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 209 NADNV----------EEAKFIYNK----------MPERNIIASNSMIVLFGRKGNVAEAC 248
             + V          EE +F+  K            + + + +N+ +  + + G++  A 
Sbjct: 397 KVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAE 456

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            +F  M  K + SW+ALI  + QN    +AL L++ M    +  D   + S+LSACA L 
Sbjct: 457 GVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLK 516

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G  +H   ++ G E                               LD     S++S
Sbjct: 517 SLSCGKEIHGSMLRNGFE-------------------------------LDEFICISLVS 545

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y++CG +  A+  FD M EK++V W+TMI+G++Q++   + L +F +M    I PDE +
Sbjct: 546 LYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           ++  + AC+ + AL  GK +H +  K+ L  +S +  +LIDMY K GC++ +  +F    
Sbjct: 606 IIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            KG  +WN LI G+ ++G   K++E+F  M+ +G  P+ +TF+ +L AC H GLV EG  
Sbjct: 666 LKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLE 725

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +   M     ++P  +HY C+VD+LGRAG L EA EL+  +P  PD   W +LL +C+ +
Sbjct: 726 YLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNY 785

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            D ++GE+V  KL+EL PD    +VL+SN +A  G+WD+V ++R  M   G+ K  GCS 
Sbjct: 786 RDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSW 845

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE  G +  FL GD +  Q  +I     E+ KK+   GY PDT  V  +++++EK   L 
Sbjct: 846 IEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILR 905

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLAI+FGL+  +    +R+ KNLRIC DCH A K +S+   REI+VRD  RFHHFK
Sbjct: 906 NHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFK 965

Query: 789 HGSCSCMDFW 798
           +G CSC D+W
Sbjct: 966 NGFCSCGDYW 975



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 158/621 (25%), Positives = 291/621 (46%), Gaps = 93/621 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALRL 145
           +F      N F++N ++  Y++ ++ + A+ ++  M++    V DN+T P + +A     
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  G+ +H   LK    SDV+V N LI MY   G + +A K+FD+ P  +LVSWNS++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 206 GYVNADNVEEAKFIYNK--------MPERNIIAS-------------------------- 231
             +     EE+  ++          MP+   + +                          
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  +S++ ++ + G + EA R+  +  +K+++SW+++I  Y ++  +  A  L   
Sbjct: 331 CGELKVNSSLLDMYSKCGYLCEA-RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRK 389

Query: 285 M-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
           M ++ +V V+EV +++VL  C           +H  A++ G      +Q+          
Sbjct: 390 MQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGF-----IQS---------- 434

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                          D +  N+ ++GY KCGS+  A  +F  M  K V SW+ +I G+ Q
Sbjct: 435 ---------------DELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +    + L L++ M+  G+ PD  T+ S++SAC  L +L  GK IH  + +NG +++  +
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFI 539

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +L+ +Y++ G +  A   F   EEK +  WN +I GF+ N     +L+MF +M  S +
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKI 599

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+EI+ +G LGAC  +  +  G       ++ H L  +S     ++D+  + G +++++
Sbjct: 600 WPDEISIIGALGACSQVSALRLGKELHCFAVKSH-LTEHSFVTCSLIDMYAKCGCMEQSQ 658

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL---------QPDHDGFHVL 634
            + + + +  +V TW  L+     HG        GRK +EL         +PD   F  L
Sbjct: 659 NIFDRVHLKGEV-TWNVLITGYGIHGH-------GRKAIELFKSMQNAGFRPDSVTFIAL 710

Query: 635 LSNIHASKGRWDDVLEVRGMM 655
           L+  + + G   + LE  G M
Sbjct: 711 LTACNHA-GLVAEGLEYLGQM 730


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/490 (43%), Positives = 316/490 (64%), Gaps = 32/490 (6%)

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           V+ G ++H++ ++ G    I +QN+L+H+Y++C                           
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC--------------------------- 36

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
               G V  A  +FD M EKD+V+W+++I+G+A++ +  E L+L+ EM   GI+PD  T+
Sbjct: 37  ----GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 92

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           VS++SAC  + AL  GK +H Y+ K GL  N      L+D+Y + G V+ A  +F    +
Sbjct: 93  VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 152

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHR 548
           K   SW +LI+G A+NG   +++E+F  M+ + G+ P EITFVG+L AC H G+V EG  
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 212

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +F  M +E+++EP  +H+GCMVDLL RAG +K+A E I+SMPM P+V  W  LLGAC  H
Sbjct: 213 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVH 272

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
           GD ++ E    ++++L+P+H G +VLLSN++AS+ RW DV ++R  M+R GV K+PG S+
Sbjct: 273 GDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSL 332

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           +E    +HEFL GD++HPQ + I   L EM  +L+ EGY P    V  D+++EEKE  + 
Sbjct: 333 VEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVV 392

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEK+AIAF LI+    +PI ++KNLR+C DCH A K +S+ ++REIVVRDR RFHHFK
Sbjct: 393 YHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFK 452

Query: 789 HGSCSCMDFW 798
           +GSCSC D+W
Sbjct: 453 NGSCSCQDYW 462



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 42/305 (13%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           I   NS++ L+   G+VA A ++F +MP+KDLV+W+++I+ + +N   EEAL L+  M  
Sbjct: 23  IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 82

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  D   +VS+LSACA +  +  G  VH   +K+G+   ++  N L+ +Y+ CG +  
Sbjct: 83  KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 142

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A+ LFD   + + +SW S+I G                            ++G+ +    
Sbjct: 143 AKTLFDEMVDKNSVSWTSLIVG--------------------------LAVNGFGK---- 172

Query: 408 SETLSLFMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHAYIR--KNGLKINSILG 464
            E + LF  M+   G+ P E T V ++ AC+H   + +G     Y R  +   KI   + 
Sbjct: 173 -EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG---FEYFRRMREEYKIEPRIE 228

Query: 465 --TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
               ++D+  + G V  A E       +  V  W  L+    ++G  D  L  F+ ++  
Sbjct: 229 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQIL 286

Query: 522 GVTPN 526
            + PN
Sbjct: 287 QLEPN 291



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 76/318 (23%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ IH  V+++GF S +YV N+L+++YA CGD+++A K+FD+ P  DLV+WNS++ G+  
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 210 ADNVEEAKFIYNKM------PE---------------------------------RNIIA 230
               EEA  +Y +M      P+                                 RN+ +
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 126

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           SN ++ L+ R G V EA  LF EM  K+ VSW++LI     N   +EA+ LF  M     
Sbjct: 127 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEG 186

Query: 291 MVD-EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           ++  E+  V +L AC+           H   VK G E +  ++           E     
Sbjct: 187 LLPCEITFVGILYACS-----------HCGMVKEGFEYFRRMRE----------EYKIEP 225

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHD--- 405
           ++   G  +DL++         + G V+KA     +M ++ +VV W T++     H    
Sbjct: 226 RIEHFGCMVDLLA---------RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 276

Query: 406 --QFSETLSLFMEMQHHG 421
             +F+    L +E  H G
Sbjct: 277 LAEFARIQILQLEPNHSG 294



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 72/127 (56%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ ++K+F  +   +   +N+++  + +   P++A+ LY  M +  +  D +T   L  
Sbjct: 38  DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLS 97

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++  GK +H +++K G   +++ +N L+++YA CG +  A+ LFDE    + VS
Sbjct: 98  ACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS 157

Query: 200 WNSILAG 206
           W S++ G
Sbjct: 158 WTSLIVG 164


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/439 (48%), Positives = 295/439 (67%)

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+S  +MI+ Y K G +++AR LFD + E+D + W+ MI GYAQH   +E L LF +M +
Sbjct: 6   LVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLN 65

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             +RP+E T+++V+SAC    AL+ G+W+H+YI  NG+ IN  +GT+LIDMY K G +++
Sbjct: 66  AKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLED 125

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A  VF     K V +WN++++G+AM+G +  +L +F EM   G  P +ITF+GVL AC H
Sbjct: 126 ARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSH 185

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV EG + F SM  E+ +EP  +HYGCMV+LLGRAG L+EA EL+++M +  D   WG
Sbjct: 186 AGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWG 245

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            LLGAC+ HG+  +GE++   LV     + G +VLLSNI+A+ G W+ V  VR +M   G
Sbjct: 246 TLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESG 305

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
             K PGCS IE N  +HEFLAGD  HP+  EI  ML+E+   LK  GY P T  V  D++
Sbjct: 306 FEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLE 365

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
             +KE +L  HSEKLA+AFGLIT  P   I+I+KNLR+C DCH   K IS+   R++V+R
Sbjct: 366 DAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMR 425

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR+RFHHF +G CSC D+W
Sbjct: 426 DRNRFHHFVNGLCSCGDYW 444



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 35/287 (12%)

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           MPE+++++  +MI  + + G + EA  LF  + ++D + W+ +I  Y Q+ +  E L+LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M++ +V  +EV V++VLSAC     ++ G  VH+     GI   + +  +LI MYS C
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +  A  +F+   N D+++WNSM+ G                               YA
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVG-------------------------------YA 149

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
            H    + L LF EM   G +P + T + V++AC+H   + +G W   Y  K+   I   
Sbjct: 150 MHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEG-WKFFYSMKDEYGIEPK 208

Query: 463 LG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
           +     ++++  + G ++ A E+    E ++    W  L+    ++G
Sbjct: 209 VEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHG 255



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 41/222 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  LE  +   +N M+  Y Q  +P + + L++ MLN  V  +  T   +  A     +
Sbjct: 28  LFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGA 87

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ +H ++   G   +V V  +LI+MY+ CG L  AR +F+     D+V+WNS++ G
Sbjct: 88  LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVG 147

Query: 207 YV-----------------------------------NADNVEEA-KFIYNKMPERNIIA 230
           Y                                    +A  V E  KF Y+   E  I  
Sbjct: 148 YAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEP 207

Query: 231 S----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                  M+ L GR G + EA  L K M   +D V W  L+ 
Sbjct: 208 KVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/553 (41%), Positives = 340/553 (61%), Gaps = 4/553 (0%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F ++   +   ++ALI  Y   E  +E+   +  M    V+       ++  AC     
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 310 VKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           V  G  +H   + +G     +++ N++I MY  CG +    K+FD   N D+ISW  +IS
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y+K G++E A  LFD +  KD+V+W+ M+SG+AQ+ +  E +  F +MQ  G+  DE T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKN--GLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           L+ VISAC  L A     WI     K+  G K + ++G+ LIDMY K G V +A  VF G
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            +E+ V S++++I+GFAM+G    ++++F EM K+ + PN +TF+GVL AC H G+V++G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            + F  M + + ++P++ HY CMVDLLGRAG L+EA EL+++MP+ P    WGALLGAC+
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACR 461

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H   ++       L EL+P   G ++LL+NI+AS GRW+DV  VR +M  RG+ K P  
Sbjct: 462 IHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAF 521

Query: 667 SMIEA-NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
           S IE+  G++HEF +GD THP+  EI   L+++  +L+ +GY P    V++D++ E+K  
Sbjct: 522 SWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRR 581

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLA+AFGLI+  P + IRI+KNLRIC DCH+     S+   REI+VRD  RFH
Sbjct: 582 ILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFH 641

Query: 786 HFKHGSCSCMDFW 798
           HF  G CSC +FW
Sbjct: 642 HFHDGICSCGNFW 654



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 223/474 (47%), Gaps = 68/474 (14%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           S + T L  C++  Q  Q+ ++++L GL    +  ++LI+  T L   ++  Y   IF  
Sbjct: 47  SQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVD-PYPLSIFNQ 105

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           +  PN F++N ++R Y+     +++   Y LM    V   ++T+  L +A   ++ V  G
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165

Query: 151 KLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           + IH   +L  GF  D++V N++I+MY  CG L   RK                      
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRK---------------------- 203

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                    ++++MP R++I+   +I  + + GN+  A  LF  +P KD+V+W+ ++S +
Sbjct: 204 ---------VFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGF 254

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK--IGIEC 327
            QN    EA++ F  M +  V  DE+ ++ V+SACA L   K    +  +A K   G + 
Sbjct: 255 AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            + + +ALI MYS CG +  A ++F      ++ S++SMI G+   G V  A  LFD M+
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMV 374

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
           + +                               I+P+  T + V++AC+H   ++QG  
Sbjct: 375 KTE-------------------------------IKPNRVTFIGVLTACSHAGMVEQGWQ 403

Query: 448 IHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           I   + K  G+K ++   T ++D+  + G +  A E+      E     W AL+
Sbjct: 404 IFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALL 457



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC-VDN-ALEV 483
           E+ +V+ +  C +L  + Q   +HA I  NGL  +  +   LI    KL   VD   L +
Sbjct: 46  ESQIVTTLDGCKNLTQIKQ---VHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSI 102

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F+         +NALI G+ +     +S E +S M+K GV P   TF  +  AC     V
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
             G +     I       +      M+D+  + G L+   ++ + MP + DV +W  L+ 
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP-NRDVISWTELIS 221

Query: 604 ACKKHGDHE 612
           A  K G+ E
Sbjct: 222 AYVKSGNME 230


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/598 (38%), Positives = 332/598 (55%), Gaps = 42/598 (7%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           +VA A ++F E+P+++++  + +I  Y  N  Y E + +F  M    V  D      VL 
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           AC+    +  G  +H  A K+G+   + + N L+ MY  CG ++ A  + D     D++S
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 208

Query: 363 WNSMISGYLK----------CGSVEKARALFDA--------------------------- 385
           WNS++ GY +          C  +E  +   DA                           
Sbjct: 209 WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFK 268

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +K +VSW+ MI  Y ++    E + L+  M+  G  PD  ++ SV+ AC    AL  G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K IH YI +  L  N +L   LIDMY K GC++ A +VF   + + V SW A+I  +  +
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G    ++ +FS+++ SG+ P+ I FV  L AC H GL++EG   F  M   +++ P  +H
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
             CMVDLLGRAG +KEA   I+ M M P+   WGALLGAC+ H D ++G     KL +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+  G++VLLSNI+A  GRW++V  +R +M  +G+ K PG S +E N IIH FL GDR+H
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ +EI   LD + KK+K  GY PD+     D+++E+KET L  HSEKLAI F L+    
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628

Query: 746 P-----NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                 N IRI KNLRIC DCH AAK IS+   REI++RD +RFH F+ G CSC D+W
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 247/563 (43%), Gaps = 77/563 (13%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           P   + +L   L      +    + S++IL  L  ++    +L++    L    +++ + 
Sbjct: 38  PQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK---DVASAR 94

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N  I N M+R+Y+      + + ++  M   NV  D+YT+P + +A +   
Sbjct: 95  KVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSG 154

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  G+ IH    K G  S ++V N L++MY  CG LS AR + DE    D+VSWNS++ 
Sbjct: 155 TIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVV 214

Query: 206 GYVNADNVEEAKFIYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           GY      ++A  +  +M    I      +AS    V      NV     +F +M KK L
Sbjct: 215 GYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL 274

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           VSW+ +I  Y +N M  EA+ L+  M       D V + SVL AC + + +  G  +H  
Sbjct: 275 VSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 334

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             +  +   + L+NALI MY+ CG +  A  +F+   + D++SW +MIS Y         
Sbjct: 335 IERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAY--------- 385

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                               G++   +  + ++LF ++Q  G+ PD    V+ ++AC+H 
Sbjct: 386 --------------------GFS--GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHA 423

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
             L++G+     +  +  KI   L          L C+ + L                  
Sbjct: 424 GLLEEGRSCFKLM-TDHYKITPRL--------EHLACMVDLL------------------ 456

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
                 G A K  E +  ++   + PNE  +  +LGACR     D G    + + Q   L
Sbjct: 457 ------GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ---L 507

Query: 560 EP-NSKHYGCMVDLLGRAGMLKE 581
            P  S +Y  + ++  +AG  +E
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEE 530



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 6/255 (2%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y     V  AR +FD + E++V+  + MI  Y  +  + E + +F  M    +RPD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ AC+    +  G+ IH    K GL     +G  L+ MY K G +  A  V  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + V SWN+L++G+A N   D +LE+  EM+   ++ +  T   +L A  +     E
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTE 257

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALL 602
              +   M  +   + +   +  M+ +  +  M  EA EL   M      PD  +  ++L
Sbjct: 258 NVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 603 GACKKHGDHEMGERV 617
            AC       +G+++
Sbjct: 317 PACGDTSALSLGKKI 331



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 31/311 (9%)

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           DQ S   ++F+  Q     PD  TL                + +H+ I    L+ NS LG
Sbjct: 34  DQKSPQETVFLLGQVLDTYPDIRTL----------------RTVHSRIILEDLRCNSSLG 77

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             L+  Y  L  V +A +VF    E+ V   N +I  +  NG   + +++F  M    V 
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+  TF  VL AC   G +  G R  +    +  L         +V + G+ G L EA  
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIG-RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           +++ M    DV +W +L+    ++   +    V R++  ++  HD   +       S   
Sbjct: 197 VLDEMSRR-DVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
            ++V+ V+ M  + G       S++  N +I  ++         N +     E+  +++ 
Sbjct: 256 TENVMYVKDMFFKMGKK-----SLVSWNVMIGVYMK--------NAMPVEAVELYSRMEA 302

Query: 705 EGYAPDTLEVA 715
           +G+ PD + + 
Sbjct: 303 DGFEPDAVSIT 313


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/832 (31%), Positives = 439/832 (52%), Gaps = 96/832 (11%)

Query: 57   GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
            GL  D F A  L+        F  +  +  +F  +   +  ++N MM+AY+   +  +A+
Sbjct: 757  GLQWDVFVAGALVNIYAK---FGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEAL 813

Query: 117  CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA-----------GFDSD 165
             L+       +  D+ T   LA+    + +V E +L     LKA              SD
Sbjct: 814  LLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQ---LKAYGTKLFMYDDDDDGSD 870

Query: 166  VYVNNTLINMYAVCGDLSAARKLF----DESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            V   N  ++ +   G+   A   F    +     D +++  +L+     + +E  K I+ 
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 222  KMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
             +     ++ +   N +I ++ + G+V+ A  +F +M + DLVSW+ +IS    + + E 
Sbjct: 931  IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC 990

Query: 278  ALVLFMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGI--ECYINLQ-- 332
            ++ +F++++   ++ D+  V SVL AC++L       T +HA A+K G+  + +++    
Sbjct: 991  SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI 1050

Query: 333  ---------------------------NALIHMYSSCGEITTAEKLF------------- 352
                                       NA++H Y   G+   A +L+             
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQI 1110

Query: 353  --------------------------DAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                                        G NLDL   + ++  YLKCG +E AR +F+ +
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEI 1170

Query: 387  IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
               D V+W+TMISG  ++ Q    L  +  M+   ++PDE T  +++ AC+ L AL+QG+
Sbjct: 1171 PSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGR 1230

Query: 447  WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
             IHA   K     +  + T+L+DMY K G +++A  +F  T    ++SWNA+I+G A +G
Sbjct: 1231 QIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHG 1290

Query: 507  LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             A+++L+ F EMK  GVTP+ +TF+GVL AC H GLV E + +F SM + + +EP  +HY
Sbjct: 1291 NAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHY 1350

Query: 567  GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
             C+VD L RAG ++EAE++I SMP     + +  LL AC+   D E G+RV  KL+ L+P
Sbjct: 1351 SCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEP 1410

Query: 627  DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
                 +VLLSN++A+  +W++V   R MM +  V K PG S ++    +H F+AGDR+H 
Sbjct: 1411 SDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHE 1470

Query: 687  QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
            + + I N ++ + K+++ EGY PDT     D+++E+KE +L+ HSEKLAIA+GL+   P 
Sbjct: 1471 ETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPS 1530

Query: 747  NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              +R++KNLR+C DCH A K+IS+ F+RE+V+RD +RFHHF+ G CSC D+W
Sbjct: 1531 TTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 139/556 (25%), Positives = 266/556 (47%), Gaps = 54/556 (9%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            +N ++ A+  +   +    L++L+  + V    +T   + +   L  S    + +H + +
Sbjct: 697  WNAILSAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAV 754

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            K G   DV+V   L+N+YA  G +  AR LFD   + D+V WN ++  YV+     EA  
Sbjct: 755  KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALL 814

Query: 219  IYNKMPERNIIASNSMIVLFGR----KGNVAE---------ACRLF---KEMPKKDLVSW 262
            ++++     +   +  +    R    K NV E           +LF    +    D+++W
Sbjct: 815  LFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAW 874

Query: 263  SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
            +  +S + Q     EA+  F++MI+ RV  D +  V +LS  A L  ++ G  +H + V+
Sbjct: 875  NKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVR 934

Query: 323  IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
             G++  +++ N LI+MY   G ++ A  +F   + +DL+SWN+MISG   C         
Sbjct: 935  SGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG---CA-------- 983

Query: 383  FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VA 441
                           +SG  +      ++ +F+++   G+ PD+ T+ SV+ AC+ L   
Sbjct: 984  ---------------LSGLEEC-----SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGG 1023

Query: 442  LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
                  IHA   K G+ ++S + TTLID+Y K G ++ A  +F   +   ++SWNA++ G
Sbjct: 1024 CHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHG 1083

Query: 502  FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            + ++G   K+L ++  M++SG   N+IT      A   +  + +G +   +++ +     
Sbjct: 1084 YIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQG-KQIQAVVVKRGFNL 1142

Query: 562  NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGR 619
            +      ++D+  + G ++ A  +   +P SPD   W  ++  C ++G  +H +      
Sbjct: 1143 DLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHM 1201

Query: 620  KLVELQPDHDGFHVLL 635
            +L ++QPD   F  L+
Sbjct: 1202 RLSKVQPDEYTFATLV 1217



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 4/183 (2%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE--KDVVSWSTMISGYAQHDQF 407
           ++  +GH+ D    N++I+ Y KCGS+  AR LFD   +  +D+V+W+ ++S +A  D+ 
Sbjct: 651 RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA--DKA 708

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            +   LF  ++   +     TL  V   C    +    + +H Y  K GL+ +  +   L
Sbjct: 709 RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGAL 768

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +++Y K G +  A  +F G   + V  WN ++  +   GL  ++L +FSE  ++G+ P++
Sbjct: 769 VNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDD 828

Query: 528 ITF 530
           +T 
Sbjct: 829 VTL 831



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 7/218 (3%)

Query: 43   FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
             KQ  QI + ++  G   D F  S ++      L   EM  + +IF  + SP+   + TM
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDM---YLKCGEMESARRIFNEIPSPDDVAWTTM 1181

Query: 103  MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
            +   ++    + A+  Y  M  + V  D YT+  L +A +L  ++ +G+ IH + +K   
Sbjct: 1182 ISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNC 1241

Query: 163  DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
              D +V  +L++MYA CG++  AR LF  +    + SWN+++ G     N EEA   + +
Sbjct: 1242 AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEE 1301

Query: 223  MPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPK 256
            M  R +         ++      G V+EA   F  M K
Sbjct: 1302 MKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQK 1339


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/671 (35%), Positives = 379/671 (56%), Gaps = 45/671 (6%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----- 226
           LI +    GD + AR+LFD  P  D  + +++++         EA  IY+ + ER     
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 227 ----------------------------------NIIASNSMIVLFGRKGNVAEACRLFK 252
                                             ++   N++I  +G+   V  A R+F 
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           ++  +D+VSW++L SCY +     + + +F  M    V  + + V S+L ACA L  +K+
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H  AV+ G+   + + +AL+ +Y+ C  +  A  +FD   + D++SWN +++ Y K
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 373 CGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
               EK  +LF  M    +  D  +W+ +I G  ++ +  E + +F +MQ  G +P+E T
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 403

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT-LIDMYMKLGCVDNALEVFHGT 487
           + S++ AC+    L  GK IH Y+ ++  K+  +  TT L+ MY K G ++ +  VF   
Sbjct: 404 ISSILPACSFSENLRMGKEIHCYVFRH-WKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 462

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             K V +WN +II  AM+G   ++L +F +M  S V PN +TF GVL  C H  LV+EG 
Sbjct: 463 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 522

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           + FNSM ++H +EP++ HY C+VD+  RAG L EA + I+ MPM P  + WGALL AC+ 
Sbjct: 523 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 582

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           + + E+ +   +KL E++P++ G +V L NI  +   W +  +VR +M  RG+ K PGCS
Sbjct: 583 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 642

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            ++    +H F+ GD+++ + ++I N LDE+ +K+K+ GY PDT  V  DIDQEEK  +L
Sbjct: 643 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESL 702

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSEKLA+AFG++ ++  + IR+ KNLRIC DCH A K++S+     IVVRD  RFHHF
Sbjct: 703 CNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHF 762

Query: 788 KHGSCSCMDFW 798
           K+G+CSC D W
Sbjct: 763 KNGNCSCKDLW 773



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 212/509 (41%), Gaps = 110/509 (21%)

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
           RLI+ + ++  F   + + ++F  +  P+    +T++ A     +  +AI +Y  +    
Sbjct: 103 RLIRVALNVGDF---NRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           +  D   +   A+A A+       K +HD   + G  SDV+V N LI+ Y  C  +  AR
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 219

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-------------- 226
           ++FD+  V D+VSW S+ + YV      +   ++ +M      P                
Sbjct: 220 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 279

Query: 227 -------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                              N+   ++++ L+ +  +V EA  +F  MP +D+VSW+ +++
Sbjct: 280 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 339

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVD---------------------------------- 293
            Y +N+ YE+   LF+ M    V  D                                  
Sbjct: 340 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 399

Query: 294 -EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            E+ + S+L AC+    ++ G  +H    +      +    AL++MY+ CG++  +  +F
Sbjct: 400 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 459

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     D+++WN+MI              + +AM                 H    E L 
Sbjct: 460 DMMRRKDVVAWNTMI--------------IANAM-----------------HGNGKEALF 488

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL-KINSILGTTLIDMY 471
           LF +M    ++P+  T   V+S C+H   +++G  I   + ++ L + ++   + ++D+Y
Sbjct: 489 LFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIY 548

Query: 472 MKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            + G ++ A +   G   E   S+W AL+
Sbjct: 549 SRAGRLNEAYKFIQGMPMEPTASAWGALL 577



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 96/217 (44%), Gaps = 29/217 (13%)

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           I S LG  LI + + +G  + A ++F    +   ++ + LI     +GL++++++++S +
Sbjct: 96  IPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 155

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL----- 573
           ++ G+ P+   F+    AC   G            ++   +  ++   G M D+      
Sbjct: 156 QERGIKPDMPVFLAAAKACAVSG----------DALRVKEVHDDATRCGVMSDVFVGNAL 205

Query: 574 ----GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPD 627
               G+   ++ A  + + + +  DV +W +L     K G    G  V R++    ++P+
Sbjct: 206 IHAYGKCKCVEGARRVFDDLVVR-DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 264

Query: 628 HDGFHVLLSNIHASKGRWDDV---LEVRGMMVRRGVV 661
                + +S+I  +     D+    E+ G  VR G+V
Sbjct: 265 ----PMTVSSILPACAELKDLKSGKEIHGFAVRHGMV 297


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/562 (39%), Positives = 345/562 (61%), Gaps = 4/562 (0%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +   G +  +  L         + +++ I  +    ++   L L  +M+   ++     +
Sbjct: 66  YAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTL 125

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            + L AC  L++   G ++HA A K+ +     +  AL+ MY+  G+   A  LFD   +
Sbjct: 126 SASLPACRGLSL---GRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPD 182

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             ++S  +M++ Y   G+++ AR LFD +  KD + W+ MI GY QH + +E L LF  M
Sbjct: 183 PHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRM 242

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGC 476
                 PDE T+V V+SA   L  ++ GKW+H+Y++ +  +++N  + T L+DMY K G 
Sbjct: 243 LRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGS 302

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +++A+ VFHG   K +  WNA+I G+AM+G + K+LEMF +++  G+ P +ITF+G+L A
Sbjct: 303 LEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNA 362

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV+EG   F SM  E+ ++P  +HYGCMVDLLGRAG+++EA  L++S+ ++PD  
Sbjct: 363 CSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAV 422

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W +LL AC+ H +  +G+R+   LV     + G ++LLSNI+A+ G+W++V  VR MM 
Sbjct: 423 MWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMK 482

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
             G+ K PGCS IE +  ++EF+AGD +HP  +EI  MLD+M   +K  G+ P T  V  
Sbjct: 483 ASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLH 542

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+D+  KE  L  HSEKLA+AFGLI+  P + I+I+KNLR C+DCH   K IS+   R+I
Sbjct: 543 DLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKI 602

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           V RDR+RFHHF  GSC+C D+W
Sbjct: 603 VFRDRNRFHHFVDGSCTCGDYW 624



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 419 HHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           HHG +  D A   S+++AC+      +   +HA + + GL  +  +   L   Y   G +
Sbjct: 18  HHGALTADRAA--SLLAACS---TARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRL 72

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           D++L +   T++     + + I   +  GL    L + S+M   G+ P   T    L AC
Sbjct: 73  DHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC 132

Query: 538 RHMGLVDEGHRHF-------NSMIQEHRL--------------------EPNSKHYGCMV 570
           R + L    H +        +S +    L                    +P+      M+
Sbjct: 133 RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAML 192

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
                 G L +A  L + +P   D   W A++    +HG      ++ R+++    + D 
Sbjct: 193 TCYANMGALDDARRLFDGLP-RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDE 251

Query: 631 FHVLL 635
             V+L
Sbjct: 252 VTVVL 256


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/688 (36%), Positives = 383/688 (55%), Gaps = 73/688 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--ESPVLDLVSWNSILAGYVNA 210
           IH  ++   + S  ++ N LIN+YA CG L+ A  LF         +V+W S++    + 
Sbjct: 164 IHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHF 223

Query: 211 DNVEEAKFIYNKM------PER---------------------------------NIIAS 231
           +   +A  ++N+M      P +                                 NI   
Sbjct: 224 NMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVG 283

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            +++ ++ +  ++  A R+F +MP+++LVSW+++I  +  N +Y+ A+ +F +++  + +
Sbjct: 284 TALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV 343

Query: 292 V-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           + +EV V SVLSACAN+  +  G  VH + VK G+     + N+L+ MY  C       +
Sbjct: 344 IPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKC-------R 396

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
            FD G                          LF  + ++DVV+W+ ++ G+ Q+D+F E 
Sbjct: 397 FFDEG------------------------VKLFQCVGDRDVVTWNVLVMGFVQNDKFEEA 432

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
            + F  M+  GI PDEA+  +V+ +   L AL QG  IH  I K G   N  +  +LI M
Sbjct: 433 CNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITM 492

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G + +A +VF G E+  V SW A+I  + ++G A++ +E+F  M   G+ P+ +TF
Sbjct: 493 YAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTF 552

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           V VL AC H G V+EG  HFNSM + H + P  +HY CMVDLLGRAG L EA+  IESMP
Sbjct: 553 VCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMP 612

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           M P  + WGALLGAC+K+G+ +MG     +L E++P + G +VLL+N+    GR ++  E
Sbjct: 613 MKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANE 672

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR +M   GV K PGCS I+   +   F A DR+H   +EI  ML+++ K +K +GY  +
Sbjct: 673 VRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAE 732

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V   +++ E+E  L+ HSEKLA+AFGL+T+   +PIRI KNLR C  CHT  K  S+
Sbjct: 733 TEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASK 792

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            FDREI+VRD +RFH F  G CSC D+W
Sbjct: 793 IFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 257/602 (42%), Gaps = 124/602 (20%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKF-------STDLLPFIEMSYS 84
           +L T +Q  +S K  TQI +Q+I+    +  F  + LI         +  LL F    + 
Sbjct: 148 LLNTAIQT-RSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHH 206

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           FK            + +++      N+  QA+ L+  M  +    + +T+  +  ASA  
Sbjct: 207 FKTIV--------TWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAAT 258

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           + V  G+ +H  + K GFD++++V   L++MYA C D+ +A ++FD+ P  +LVSWNS++
Sbjct: 259 MMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMI 318

Query: 205 AGY-----------VNADNVEEAKFIYNKMPERNIIAS---------------------- 231
            G+           V  D + E   I N++   +++++                      
Sbjct: 319 VGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGL 378

Query: 232 -------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  NS++ ++ +     E  +LF+ +  +D+V+W+ L+  + QN+ +EEA   F  
Sbjct: 379 VPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWV 438

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    ++ DE    +VL + A+L  +  GT++H   +K+G    + +  +LI MY+ CG 
Sbjct: 439 MRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGS 498

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +  A ++F+   + ++ISW +MIS Y   G   +   LF+ M+ +               
Sbjct: 499 LVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE--------------- 543

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
                           GI P   T V V+SAC+H   +++G         N +K      
Sbjct: 544 ----------------GIEPSHVTFVCVLSACSHTGRVEEG-----LAHFNSMK------ 576

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             + DM                    G   +  ++      G  D++      M    + 
Sbjct: 577 -KIHDM------------------NPGPEHYACMVDLLGRAGWLDEAKRFIESMP---MK 614

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAE 583
           P    +  +LGACR  G +  G      + +   +EP N  +Y  + ++  R+G L+EA 
Sbjct: 615 PTPSVWGALLGACRKYGNLKMGREAAERLFE---MEPYNPGNYVLLANMCTRSGRLEEAN 671

Query: 584 EL 585
           E+
Sbjct: 672 EV 673



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNAL 498
           +L     IH  I  N       L   LI++Y K GC++ AL +F  T    K + +W +L
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSL 216

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I   +   +  ++L +F++M+ SG  PN+ TF  +L A     +V  G +  +S+I +H 
Sbjct: 217 ITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG-QQLHSLIHKHG 275

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
            + N      +VD+  +   +  A  + + MP   ++ +W +++
Sbjct: 276 FDANIFVGTALVDMYAKCADMHSAVRVFDQMP-ERNLVSWNSMI 318


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 335/598 (56%), Gaps = 37/598 (6%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           +  +G  + A  +F    +K++V ++ +I  Y  N +Y EAL +F  M+      D    
Sbjct: 81  YSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTF 140

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
             VL AC+ L  ++ G  VH   VK+G++  + + NAL+ MY  CG +  A K+ D    
Sbjct: 141 PCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPY 200

Query: 358 LDLISWNSMISGYLKCGSVEKA-------------------------------------R 380
            D++SWNSM++GY + G  + A                                      
Sbjct: 201 RDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIH 260

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +F+ M +K+++SW+ MI+ Y  +   +E +SLF++M+  G++PD  T+ S++ AC  L 
Sbjct: 261 NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLS 320

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL  G+ +H YI K  L+ N +L   L+DMY K GC++ A +VF     + V SW +++ 
Sbjct: 321 ALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMS 380

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
            +  +G    ++ +F++M  SG  P+ I FV VL AC H GL+D+G  +F  M +++ + 
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIV 440

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P  +H+ CMVDL GRAG ++EA   I+ MPM P+   WGALL AC+ H   ++G      
Sbjct: 441 PRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADL 500

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L +L P   G++VLLSNI+A  G W DV+ VR  M + G+ K+PG S +E NG +H FLA
Sbjct: 501 LFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLA 560

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GD+ HPQ   I   LD +  K+K  GY P T     D++ E+KE  L  HSEKLAI F +
Sbjct: 561 GDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAI 620

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +      PIRI KNLR+C DCH A K IS+   R I+VRD +RFHHF +G CSC D+W
Sbjct: 621 LNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 246/510 (48%), Gaps = 76/510 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E S +  IF      N   FN M+R+Y+  N+  +A+ ++++ML+     D+YT+P + +
Sbjct: 86  ETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLK 145

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  G  +HD ++K G D+++++ N L+ MY  CG L  ARK+ D+ P  D+VS
Sbjct: 146 ACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVS 205

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKE 253
           WNS++AGY  +   ++A  I  +M   N+      +AS S +V +    NV     +F+ 
Sbjct: 206 WNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFER 265

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M KK+L+SW+ +I+ Y  N M  EA+ LF+ M +  +  D V + S+L AC +L+ +  G
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    K  ++  + L+NAL+ MY+ CG +  A  +FD     D++SW SM+S Y + 
Sbjct: 326 RRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G                         GY       + ++LF +M   G  PD    VSV+
Sbjct: 386 G------------------------QGY-------DAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 434 SACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           SAC+H   LDQG+ +      + G+         ++D++ + G V+              
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVE-------------- 460

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
                               E +S +K+  + PNE  +  +L ACR    +D G    + 
Sbjct: 461 --------------------EAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADL 500

Query: 553 MIQEHRLEP-NSKHYGCMVDLLGRAGMLKE 581
           + Q   L P  S +Y  + ++  +AGM K+
Sbjct: 501 LFQ---LAPKQSGYYVLLSNIYAKAGMWKD 527



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 13/314 (4%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y   G    AR +FD  +EK+VV ++ MI  Y  ++ + E LS+F  M      PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ AC+ L  L  G  +H  I K GL  N  +G  L+ MY K GC+  A +V  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + V SWN+++ G+A +G  D +LE+  EM    +  +  T   +     +  L  E
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--E 254

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGALL 602
             ++ ++M  E   + N   +  M+ +     M  EA  L   +E   M PD  T  +LL
Sbjct: 255 NVQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313

Query: 603 GACKKHGDHEMGERVGRKLVE---LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            AC       +G R+  K +E   LQP+    + LL +++A  G  ++  +V   M  R 
Sbjct: 314 PACGDLSALFLGRRL-HKYIEKGNLQPNLLLENALL-DMYAKCGCLEEARDVFDKMRLRD 371

Query: 660 VVKIPGCSMIEANG 673
           VV     SM+ A G
Sbjct: 372 VVSWT--SMMSAYG 383


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 363/636 (57%), Gaps = 35/636 (5%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           DV   N++I     CG+L  A +LFDE P  +++SW +++ GY+    VE A+ ++  M 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMH 132

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            +++ A N+M+  +   G V E  RLF+EMP +D++SW+++I   + N   EEAL +F  
Sbjct: 133 VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKK 192

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   V         VLSACAN      G  VH   VK+G   +  +  +LI  Y++C +
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           I  A K+F+     +++ W ++++ Y+                      W+         
Sbjct: 253 IEHAHKIFNETLTKNVVKWTALLTAYV----------------------WN--------- 281

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           ++  + L +F +M   G  P+++T    + AC  L ALD+GK IH    K GL+ +  +G
Sbjct: 282 NKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVG 341

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
            +L+ MY + G V++A+ VF    EK + SWN++I+G A +G    +L  F++M + GV 
Sbjct: 342 NSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVD 401

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFN--SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           PNEITF G+L AC   G++ +G   F   S  + + L P  +HY CMVD+LGR G L EA
Sbjct: 402 PNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRP--QHYACMVDILGRCGKLDEA 459

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
           EEL+  MP+  +   W ALL AC+ H + E+ ER  + +++L+P+    +VLLSNI+AS 
Sbjct: 460 EELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASA 519

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           GRW DV  +R  M + G+VK PG S +   G  HEFL+ DR+HP    I   LD + KKL
Sbjct: 520 GRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKL 579

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY PD      D++ E+KE  L  HSE+LAIAFGL++    + I +MKNLR+C DCH
Sbjct: 580 KEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCH 639

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +  K +S+   R+IVVRD  RFHHFK+G CSC D+W
Sbjct: 640 SVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 196/413 (47%), Gaps = 43/413 (10%)

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           +S+ + LA ++    +++A+ I++K+P  N+     MI  + R   + +A +LF  M  +
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 258 DLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           D+VSW+++I  C +   +   A  LF          DE+   +V+S              
Sbjct: 73  DVVSWNSMIKGCLDCGNL-GMATRLF----------DEMPEKNVIS-------------- 107

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
                             +++ Y   G +  A++LF   H  D+ +WN+M+ GY + G V
Sbjct: 108 ---------------WTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRV 152

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           E+   LF+ M  +DV+SW++MI G   + +  E L +F +M   G+ P  +T   V+SAC
Sbjct: 153 EEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSAC 212

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            + V  + G  +H ++ K G   +  +  +LI  Y     +++A ++F+ T  K V  W 
Sbjct: 213 ANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWT 272

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           AL+  +  N     +L +F +M K G  PN+ TF   L AC  +  +D+G +  ++M  +
Sbjct: 273 ALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG-KEIHTMAIK 331

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             LE +      +V +    G +  A  +  ++    D+ +W +++    +HG
Sbjct: 332 LGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHG 383



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 40/279 (14%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           ++A+ ++K ML + V     T+  +  A A  +    G  +H HV+K G     +++ +L
Sbjct: 184 EEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSL 243

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-------- 224
           I  YA C  +  A K+F+E+   ++V W ++L  YV  +  ++A  ++  M         
Sbjct: 244 ITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQ 303

Query: 225 -------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKE 253
                                          E ++   NS++V++   GNV  A  +F+ 
Sbjct: 304 STFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRN 363

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           + +KD+VSW+++I    Q+     AL+ F  MI   V  +E+    +LSAC+   ++  G
Sbjct: 364 INEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKG 423

Query: 314 TSVHALAVKIGIECYINLQNA-LIHMYSSCGEITTAEKL 351
                   +           A ++ +   CG++  AE+L
Sbjct: 424 RCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEEL 462



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L  C +  +F    Q+   ++  G     F +  LI F  + +   ++ ++ KIF    +
Sbjct: 209 LSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCM---KIEHAHKIFNETLT 265

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   +  ++ AY+  N  Q A+ ++  M       +  T+ +  +A     ++ +GK I
Sbjct: 266 KNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEI 325

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H   +K G ++DV+V N+L+ MY  CG++++A  +F      D+VSWNSI+ G       
Sbjct: 326 HTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFG 385

Query: 214 EEAKFIYNKMPERNI 228
             A   +N+M  R +
Sbjct: 386 LWALIFFNQMIRRGV 400


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/541 (40%), Positives = 330/541 (60%), Gaps = 4/541 (0%)

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+A+I  Y    +  E+   +  M    V        ++  AC     +  G  VHA  +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 322 KIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            IG     + + N++I +Y  CG +  A K+FD     D++SW  +I  Y K G +E A 
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            LFD +  KD+V+W+ M++GYAQ+ +  E L  F +MQ  G+  DE TL  VISAC  L 
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 441 ALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           A+    WI     ++G     N ++G+ LIDMY K G  D A +VF   +E+ V S++++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I+G+AM+G A  +L++F +M K+ + PN++TF+G+L AC H GLV++G + F  M +   
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           + P+  HY CMVDLLGRAG L+EA +L+++MPM P+   WGALLGAC+ HG+ ++ +   
Sbjct: 410 VAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAA 469

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA-NGIIHE 677
            +L +L+P+  G ++LLSNI+AS GRW++V ++R ++  +G  K PGCS  E  NG IH+
Sbjct: 470 NELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHD 529

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIA 737
           F AGD THP+ +EI   L ++ ++L+  GY P+     +D+  +EKE  L  HSEKLA+A
Sbjct: 530 FFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALA 589

Query: 738 FGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           +GL+     + I+IMKN+RIC DCH      S    REI+VRD  RFHHF +G+CSC +F
Sbjct: 590 YGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNF 649

Query: 798 W 798
           W
Sbjct: 650 W 650



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 268/596 (44%), Gaps = 112/596 (18%)

Query: 1   MTLATKLAHLSS-TIKSSVNAKPIFKPTINLSILETHL----QKCQSFKQFTQILSQMIL 55
           ++  +KL+HL +   + S N  P  +      +LE  L      C  F Q  Q+ + +I 
Sbjct: 8   LSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIR 67

Query: 56  TGLIADTFAASRLIKFSTDL-LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ 114
            GL   ++  ++LI+  T + +P    SY   +F  +  PN F++  M+R Y  + +  +
Sbjct: 68  NGLSQCSYVLTKLIRMLTKVDVPM--GSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSE 125

Query: 115 AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH-VLKAGFDSDVYVNNTLI 173
           +   Y  M  + VG  ++T+  L +A    L++  GK +H   +L  GF SD+YV N++I
Sbjct: 126 STNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMI 185

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           ++Y  CG L  ARK                               ++++M ER++++   
Sbjct: 186 DLYVKCGFLGCARK-------------------------------VFDEMSERDVVSWTE 214

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +IV + + G++  A  LF ++P KD+V+W+A+++ Y QN   +EAL  F  M D  +  D
Sbjct: 215 LIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETD 274

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKL 351
           EV +  V+SACA L  VK    +  +A + G     N  + +ALI MYS CG    A K+
Sbjct: 275 EVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F+     ++ S++SMI GY                               A H +    L
Sbjct: 335 FEVMKERNVFSYSSMILGY-------------------------------AMHGRAHSAL 363

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-NGLKINSILGTTLIDM 470
            LF +M    IRP++ T + ++SAC+H   ++QG+ + A + K  G+  +      ++D+
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDL 423

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
             + GC++ AL++                                  +K   + PN   +
Sbjct: 424 LGRAGCLEEALDL----------------------------------VKTMPMEPNGGVW 449

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEEL 585
             +LGACR  G  D      N +    +LEPN   +Y  + ++   AG  +E  +L
Sbjct: 450 GALLGACRIHGNPDIAQIAANELF---KLEPNGIGNYILLSNIYASAGRWEEVSKL 502



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 7/201 (3%)

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F ++QH   +  E  L+S++  CT      Q K +HA+I +NGL   S + T LI M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCT---LFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 474 LGCVDNA--LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           +     +  L VF          W A+I G+A+ GL  +S   ++ M++ GV P   TF 
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +  AC     +D G +     I       +      M+DL  + G L  A ++ + M  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS- 205

Query: 592 SPDVATWGALLGACKKHGDHE 612
             DV +W  L+ A  K+GD E
Sbjct: 206 ERDVVSWTELIVAYAKYGDME 226


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/786 (33%), Positives = 412/786 (52%), Gaps = 77/786 (9%)

Query: 56  TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
            G  +D F  + LI        F+E   + K+F  + + N   +N++M A  +     + 
Sbjct: 224 AGGFSDAFVGNALIAMYGKC-GFVE--SAVKVFETMRNRNLVSWNSVMYACSENGGFGEC 280

Query: 116 ICLYK-LMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
             ++K L+++   G+  D  T   +  A A    V  G ++H    K G   +V VNN+L
Sbjct: 281 CGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSL 340

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE-----------EAKFIYN 221
           ++MY+ CG L  AR LFD +   ++VSWN+I+ GY    +             E K   N
Sbjct: 341 VDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVN 400

Query: 222 KMPERNII-----------------------------ASNSMIVLFGRKGNVAEACRLFK 252
           ++   N++                              +N+ +  + +  ++  A R+F 
Sbjct: 401 EVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFC 460

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            M  K + SW+ALI  + QN    ++L LF+ M+D  +  D   + S+L ACA L  ++ 
Sbjct: 461 GMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRC 520

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H   ++ G+E                               LD     S++S Y++
Sbjct: 521 GKEIHGFMLRNGLE-------------------------------LDEFIGISLMSLYIQ 549

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           C S+   + +FD M  K +V W+ MI+G++Q++   E L  F +M   GI+P E  +  V
Sbjct: 550 CSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGV 609

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + AC+ + AL  GK +H++  K  L  ++ +   LIDMY K GC++ +  +F    EK  
Sbjct: 610 LGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDE 669

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
           + WN +I G+ ++G   K++E+F  M+  G  P+  TF+GVL AC H GLV EG ++   
Sbjct: 670 AVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQ 729

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M   + ++P  +HY C+VD+LGRAG L EA +L+  MP  PD   W +LL +C+ +GD E
Sbjct: 730 MQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLE 789

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           +GE V +KL+EL+P+    +VLLSN++A  G+WD+V +VR  M   G+ K  GCS IE  
Sbjct: 790 IGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIG 849

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G+++ FL  D +  +  +I     ++ KK+   GY PDT  V  ++++E K   L  HSE
Sbjct: 850 GMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSE 909

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAI+FGL+  +    +R+ KNLRIC DCH A K +S+   R+I+VRD  RFHHFK+G C
Sbjct: 910 KLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLC 969

Query: 793 SCMDFW 798
           +C DFW
Sbjct: 970 TCGDFW 975



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/572 (25%), Positives = 265/572 (46%), Gaps = 77/572 (13%)

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQA 140
           S S  +F   +  + F++N ++  Y +  + + AI L+ +L+   ++  DN+T P +A+A
Sbjct: 145 SDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKA 204

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A    V  G+ +H   LKAG  SD +V N LI MY  CG + +A K+F+     +LVSW
Sbjct: 205 CAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSW 264

Query: 201 NSILAGYVNADNVEEAKFIYNKM---------PE-------------------------- 225
           NS++          E   ++ ++         P+                          
Sbjct: 265 NSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGL 324

Query: 226 -------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                    +  +NS++ ++ + G + EA  LF     K++VSW+ +I  Y +   +   
Sbjct: 325 AFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGV 384

Query: 279 LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
             L   M  + +V V+EV V++VL AC+    + +   +H  A + G      L++ L+ 
Sbjct: 385 FELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGF-----LKDELVA 439

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
                                     N+ ++ Y KC S++ A  +F  M  K V SW+ +
Sbjct: 440 --------------------------NAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNAL 473

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I  +AQ+    ++L LF+ M   G+ PD  T+ S++ AC  L  L  GK IH ++ +NGL
Sbjct: 474 IGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGL 533

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +++  +G +L+ +Y++   +     +F   E K +  WN +I GF+ N L  ++L+ F +
Sbjct: 534 ELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQ 593

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M   G+ P EI   GVLGAC  +  +  G    +  ++ H L  ++     ++D+  + G
Sbjct: 594 MLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH-LSEDAFVTCALIDMYAKCG 652

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +++++ + + +    D A W  ++     HG
Sbjct: 653 CMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHG 683



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 197/427 (46%), Gaps = 75/427 (17%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           +DV ++  +I MY+ CG  S +R +FD +   DL  +N++L+GY       +A  ++ ++
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLEL 185

Query: 224 -------PER---------------------------------NIIASNSMIVLFGRKGN 243
                  P+                                  +    N++I ++G+ G 
Sbjct: 186 LSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGF 245

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI---DHRVMVDEVVVVSV 300
           V  A ++F+ M  ++LVSW++++    +N  + E   +F  ++   +  ++ D   +V+V
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           + ACA +  V+ G  VH LA K+GI   + + N+L+ MYS CG +  A  LFD     ++
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH- 419
           +SWN++I                          W     GY++   F     L  EMQ  
Sbjct: 366 VSWNTII--------------------------W-----GYSKEGDFRGVFELLQEMQRE 394

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             +R +E T+++V+ AC+    L   K IH Y  ++G   + ++    +  Y K   +D 
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A  VF G E K VSSWNALI   A NG   KSL++F  M  SG+ P+  T   +L AC  
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 540 MGLVDEG 546
           +  +  G
Sbjct: 515 LKFLRCG 521



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 40/335 (11%)

Query: 351 LFDAGHNL--DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           L  A H L  D++    +I+ Y  CGS   +R +FDA  EKD+  ++ ++SGY+++  F 
Sbjct: 117 LVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFR 176

Query: 409 ETLSLFME-MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           + +SLF+E +    + PD  TL  V  AC  +  ++ G+ +HA   K G   ++ +G  L
Sbjct: 177 DAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNAL 236

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM---KKSGVT 524
           I MY K G V++A++VF     + + SWN+++   + NG   +   +F  +   ++ G+ 
Sbjct: 237 IAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLV 296

Query: 525 PNEITFVGVLGACRHMGLVDEG----HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
           P+  T V V+ AC  +G V  G       F   I E     NS     +VD+  + G L 
Sbjct: 297 PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNS-----LVDMYSKCGYLG 351

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGD----HEMGERVGRK---------LVELQPD 627
           EA  L + M    +V +W  ++    K GD     E+ + + R+         ++ + P 
Sbjct: 352 EARALFD-MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
             G H LLS           + E+ G   R G +K
Sbjct: 411 CSGEHQLLS-----------LKEIHGYAFRHGFLK 434


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 352/582 (60%), Gaps = 18/582 (3%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           SN++   +   G +  A +LF E+P  +KD V W+ L+S + +  +   ++ LF+ M   
Sbjct: 46  SNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRK 105

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           RV +D+V VV +   CA L  +      H +AVK+G+   + + NAL+ MY  CG ++  
Sbjct: 106 RVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEV 165

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           +++F+      ++SW  ++   +K   +E+ R +F  M E++ V+W+ M++GY       
Sbjct: 166 KRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTR 225

Query: 409 ETLSLFMEMQH---HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS---- 461
           E L L  EM     HG+  +  TL S++SAC     L  G+W+H Y  K  + +      
Sbjct: 226 EVLELLAEMVFRCGHGL--NFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASY 283

Query: 462 ---ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
              ++GT L+DMY K G +D+++ VF    ++ V +WNAL  G AM+G     ++MF +M
Sbjct: 284 DDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQM 343

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +  V P+++TF  VL AC H G+VDEG R F+S+ + + LEP   HY CMVDLLGRAG+
Sbjct: 344 IRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGL 401

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           ++EAE L+  MP+ P+    G+LLG+C  HG  E+ ER+ R+L+++ P +  + +L+SN+
Sbjct: 402 IEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNM 461

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           + ++GR D    +RG + +RG+ KIPG S I  N  +H F +GDR+HP+  EI   L+E+
Sbjct: 462 YVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEV 521

Query: 699 AKKLKLEGYAPDT--LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
            ++++  GY PD   L    + D EEKE  L  HSEKLA+ FGL+   P  P+ + KNLR
Sbjct: 522 IERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLR 581

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCH+A K +S+ +DREI++RDR+RFH FK GSCSC D+W
Sbjct: 582 ICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 190/475 (40%), Gaps = 106/475 (22%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + T++ ++ +  +   ++ L+  M    V +D+ +   L    A    +   +  H   +
Sbjct: 79  WTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAV 138

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G  + V V N L++MY  CG +S  +++F+E     +VSW  +L   V  + +E  + 
Sbjct: 139 KMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGRE 198

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           ++++MPERN +A   M+  +   G   E   L  EM          +  C          
Sbjct: 199 VFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEM----------VFRCGHG------- 241

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK----IGIECY---INL 331
                        ++ V + S+LSACA    +  G  VH  A+K    +G E     + +
Sbjct: 242 -------------LNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMV 288

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             AL+ MY+ CG I ++  +F      ++++WN                ALF        
Sbjct: 289 GTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWN----------------ALF-------- 324

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                  SG A H +    + +F +M    ++PD+ T  +V+SAC+H   +D+G      
Sbjct: 325 -------SGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHS 376

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           +R                              F+G E K V  +  ++      GL +++
Sbjct: 377 LR------------------------------FYGLEPK-VDHYACMVDLLGRAGLIEEA 405

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             +  EM    V PNE+    +LG+C   G V+   R    +IQ   + P +  Y
Sbjct: 406 EILMREMP---VPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQ---MSPGNTEY 454



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 154/378 (40%), Gaps = 71/378 (18%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKLFDAGHN 357
           +L  CA+ + ++ G  +HA+    G++      L NAL   Y+S GE+ TA+KLFD    
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDE--- 68

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                                       + EKD V W+T++S ++++     ++ LF+EM
Sbjct: 69  --------------------------IPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEM 102

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +   +  D+ ++V +   C  L  L   +  H    K G+  +  +   L+DMY K G V
Sbjct: 103 RRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLV 162

Query: 478 -------------------------------DNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                                          +   EVFH   E+   +W  ++ G+   G
Sbjct: 163 SEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAG 222

Query: 507 LADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSK 564
              + LE+ +EM  + G   N +T   +L AC   G LV     H  ++ +E  +   + 
Sbjct: 223 FTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEAS 282

Query: 565 HYGCM-----VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           +   M     VD+  + G +  +  +   M    +V TW AL      HG   M   +  
Sbjct: 283 YDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRNVVTWNALFSGLAMHGKGRMVIDMFP 341

Query: 620 KLV-ELQPDHDGFHVLLS 636
           +++ E++PD   F  +LS
Sbjct: 342 QMIREVKPDDLTFTAVLS 359



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 124/288 (43%), Gaps = 37/288 (12%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC    +  +I  ++    +++ T     ++K+         +    ++F  +   N   
Sbjct: 158 KCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEG-------LERGREVFHEMPERNAVA 210

Query: 99  FNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           +  M+  Y+     ++ +  L +++     G++  T   +  A A   ++  G+ +H + 
Sbjct: 211 WTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYA 270

Query: 158 LK--------AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           LK        A +D DV V   L++MYA CG++ ++  +F      ++V+WN++ +G   
Sbjct: 271 LKKEMMMGEEASYD-DVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAM 329

Query: 210 ADNVEEAKFIYNKMPE--RNI----IASNSMIVLFGRKGNVAEACRLFKEM------PKK 257
                + + + +  P+  R +    +   +++      G V E  R F  +      PK 
Sbjct: 330 HG---KGRMVIDMFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKV 386

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           D   ++ ++    +  + EEA +L   M    V  +EVV+ S+L +C+
Sbjct: 387 D--HYACMVDLLGRAGLIEEAEILMREM---PVPPNEVVLGSLLGSCS 429


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/766 (33%), Positives = 417/766 (54%), Gaps = 48/766 (6%)

Query: 78   FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
            +  M+++  +F  +   N   ++TM+  Y++  + ++A+ L+  M    +GV+   + + 
Sbjct: 321  YGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG--LGVEPNGFMVA 378

Query: 138  AQASALRLSVF---EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
            +  +A   S +   EG  +H  V+K G   DVYV   L++ Y   G +  A+KLF+E P 
Sbjct: 379  SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPD 438

Query: 195  LDLVSWNSILAGYVNADNVEEAKFIYNKMP------------------------------ 224
             ++VSW S++ GY ++ N  E   +Y +M                               
Sbjct: 439  HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 498

Query: 225  ---------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                     E ++  +NS+I +F    +V EAC +F  M + D++SW+A+IS Y  + + 
Sbjct: 499  LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 558

Query: 276  EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
             E+L  F  M       +   + S+LS C+++  +K G  +H L VK+G++  + + N L
Sbjct: 559  RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 618

Query: 336  IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL---KCGSVEKARALFDAMIEKDVV 392
            + +YS  G    AE +F A    DLISWNSM++ Y+   KC    K  A    M + D V
Sbjct: 619  LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRV 678

Query: 393  SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
            +W+ +I G+A++++ +E +  +  ++  GI  +  T+VS ++A  +L  L++G+ +H  +
Sbjct: 679  TWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLV 737

Query: 453  RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
             K G + +  +    +DMY K G + + L++      +   SWN LI  FA +G   K+ 
Sbjct: 738  IKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKAR 797

Query: 513  EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            E F EM K G  P+ +TFV +L AC H GLVDEG  +++SM +E  + P  +H  C++DL
Sbjct: 798  ETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDL 857

Query: 573  LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
            LGR+G L  AE  I+ MP+ P+   W +LL AC+ HG+ E+  +    L+EL P  D  +
Sbjct: 858  LGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAY 917

Query: 633  VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
            VL SN+ A+ G+W+DV  +R  M    + K P CS ++    +H F  G++ HPQ + I 
Sbjct: 918  VLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRIS 977

Query: 693  NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
              L E+ K  K  GY PDT     D+D+E+KE  L+ HSE+LA+AFGLI     + +RI 
Sbjct: 978  AKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIF 1037

Query: 753  KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR+C DCH+  KF+S    R+IV+RD +RFHHF  G CSC D+W
Sbjct: 1038 KNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/543 (27%), Positives = 269/543 (49%), Gaps = 58/543 (10%)

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
           KL+ +N   +D   Y  + Q    + +  +G LIH H++  GF SD+++N  LI  Y   
Sbjct: 19  KLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKV 78

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG 239
           GD+ AAR +FD  P   +VSW ++++GY      E+A  +++ M    + A+++++    
Sbjct: 79  GDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHS 138

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G + +A  LF  M ++D+VSW+A+I  Y      +++  +F +M+   ++ D   + S
Sbjct: 139 KCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGS 198

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECY-------IN---------------------- 330
           VL A A    +     +H +  ++G   Y       IN                      
Sbjct: 199 VLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKD 258

Query: 331 ------------------LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
                             + NALI MY+  GEI  A++ FD     ++ISW S+ISGY K
Sbjct: 259 LFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAK 318

Query: 373 --CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
              G +  AR +FD M  ++  SWSTM+SGY +   + E + LF +M   G+ P+   + 
Sbjct: 319 HGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVA 378

Query: 431 SVISACTHLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           S+I+AC+    + D+G  +H ++ K G+  +  +GT L+  Y  +G V NA ++F    +
Sbjct: 379 SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPD 438

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE---G 546
             V SW +L++G++ +G   + L ++  M++ GV+ N+ TF  V  +C   GL+++   G
Sbjct: 439 HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLG 495

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
           ++    +IQ +  E +      ++ +      ++EA  + + M    D+ +W A++ A  
Sbjct: 496 YQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYA 553

Query: 607 KHG 609
            HG
Sbjct: 554 HHG 556



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 160/683 (23%), Positives = 307/683 (44%), Gaps = 66/683 (9%)

Query: 3   LATKLAHLSSTIKSSVNAKPIF-----KPTINLSILETHLQKCQSFKQFTQILSQMILTG 57
           L TKL      +   + A+ +F     +  ++ + + +   +   F++   + S M   G
Sbjct: 67  LNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG 126

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           + A+      L+ F +      + SY   +F  +   +   +N M+  Y  +     + C
Sbjct: 127 VKAN----HALVDFHSKCGKMEDASY---LFGTMMERDVVSWNAMIGGYAVQGFADDSFC 179

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           +++ ML   +  D YT   + +ASA    +     IH  + + G+ S   V   LIN YA
Sbjct: 180 MFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYA 239

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVN----------------ADNVEEAKFIYN 221
             G L +A+ L       DL S  +++ GY +                +  +E+AK  ++
Sbjct: 240 KNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFD 299

Query: 222 KMPERNIIASNSMIVLFGRKG--NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +M E+N+I+  S+I  + + G  ++A A  +F EM  ++  SWS ++S Y +  +YEEA+
Sbjct: 300 EMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAV 359

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNALIHM 338
            LF  M    V  +  +V S+++AC+    +   G  VH   VK GI   + +  AL+H 
Sbjct: 360 GLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHF 419

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y S G +  A+KL                               F+ M + +VVSW++++
Sbjct: 420 YGSIGLVYNAQKL-------------------------------FEEMPDHNVVSWTSLM 448

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            GY+      E L+++  M+  G+  ++ T  +V S+C  L     G  +  +I + G +
Sbjct: 449 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 508

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            +  +  +LI M+     V+ A  VF    E  + SWNA+I  +A +GL  +SL  F  M
Sbjct: 509 DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 568

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +      N  T   +L  C  +  +  G R  + ++ +  L+ N      ++ L   AG 
Sbjct: 569 RHLHNETNSTTLSSLLSVCSSVDNLKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAGR 627

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL-QPDHDGFHVLLSN 637
            ++AE + ++M    D+ +W +++    + G    G ++  +L+++ +PD   ++ L+  
Sbjct: 628 SEDAELVFQAMT-ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGG 686

Query: 638 IHASKGRWDDVLEVRGMMVRRGV 660
            HA     ++ ++   ++  +G+
Sbjct: 687 -HAENEEPNEAVKAYKLIREKGI 708


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/572 (39%), Positives = 338/572 (59%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++    +++  + + G + +A ++F +M  K++VSW+ +I    +   + EA+ LF  ++
Sbjct: 138 DVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLL 197

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  +  D  V+V VL ACA L  +++G  +     + G+   + +  +L+ MY+      
Sbjct: 198 ESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYT------ 251

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCGS+E+AR +FD M+EKD+V WS MI GYA +  
Sbjct: 252 -------------------------KCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGL 286

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E + LF EM+   +RPD   +V  +S+C  L AL+ G W    +       N +LGT+
Sbjct: 287 PREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTS 346

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LID Y K G ++ AL V+   +EK    +NA+I G AM G    +  +F +M K G+ PN
Sbjct: 347 LIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPN 406

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E TFVG+L  C H GLVD+G  +FNSM  +  + P  +HYGCMVDLL RAG L EA  LI
Sbjct: 407 EHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLI 466

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           + MPM  +V  WG+LLG C+ H + ++ E V ++L+EL+P + G +VLLSNI+++  RWD
Sbjct: 467 KGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWD 526

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +  ++R  +  +G+ K+PG S +E +G++HEFL GD +HP   +I   L+ + K LK  G
Sbjct: 527 EAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAG 586

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y P T  V FD+++EEKE  L  HSEKLA+AF LI+      IR++KNLR+C DCH A K
Sbjct: 587 YNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIK 646

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+   REIV+RD +RFH F  G+CSC D+W
Sbjct: 647 HISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 185/394 (46%), Gaps = 42/394 (10%)

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRK-----GNVAEACR 249
           L+L +W  I +G      ++ AK  + ++   N+   N ++ +  R       N      
Sbjct: 3   LELTNW-CIASGL---KCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPIL 58

Query: 250 LFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           +F + P   +   ++ +I      + +  A+ L+ +M    ++ D      VL ACA L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           +   G  +H+L  K G +C + ++  ++  YS                            
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYS---------------------------- 150

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
              KCG +  A  +FD M+ K+VVSW+ MI G  +  +F E + LF  +   G+RPD   
Sbjct: 151 ---KCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFV 207

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           +V V+ AC  L  L+ G+WI   +R+ GL  N  + T+L+DMY K G ++ A  VF G  
Sbjct: 208 IVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMV 267

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           EK +  W+A+I G+A NGL  +++E+F EM+K  V P+    VG L +C  +G ++ G+ 
Sbjct: 268 EKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNW 327

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
               M  E  L  N      ++D   + G ++EA
Sbjct: 328 AKGLMNYEEFLS-NPVLGTSLIDFYAKCGSMEEA 360



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 211/470 (44%), Gaps = 93/470 (19%)

Query: 85  FKIFAFLESP---NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           + I  F ++P   N F++NTM+R  + ++    A+ LY  M    +  D++T+  + +A 
Sbjct: 55  YPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKAC 114

Query: 142 ALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
           A RL++F  G +IH  V K GFD DV+V   ++  Y+ CG L  A K+FD+  V ++VSW
Sbjct: 115 A-RLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSW 173

Query: 201 NSILAGYVNADNVEEAKFIYNKMPE----------------------------------- 225
             ++ G +      EA  ++  + E                                   
Sbjct: 174 TGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE 233

Query: 226 ----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
               RN+  + S++ ++ + G++ EA  +F  M +KD+V WSA+I  Y  N +  EA+ L
Sbjct: 234 CGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIEL 293

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHM 338
           F  M    V  D   +V  LS+CA+L  ++ G     L   +  E +++   L  +LI  
Sbjct: 294 FFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGL---MNYEEFLSNPVLGTSLIDF 350

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y+ CG                               S+E+A  ++  M EKD V ++ +I
Sbjct: 351 YAKCG-------------------------------SMEEALGVYKMMKEKDRVVFNAVI 379

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           SG A + Q      +F +M   GI P+E T V ++  CTH   +D G+  H +   N + 
Sbjct: 380 SGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGR--HYF---NSMS 434

Query: 459 INSILGTT------LIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALIIG 501
            +  +  T      ++D+  + G +D A  +  G   K  V  W +L+ G
Sbjct: 435 HDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGG 484



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           ++TMI G    D+F+  + L+  M    I PD  T   V+ AC  L     G  IH+ + 
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVF 131

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K G   +  + T ++  Y K G + +A +VF     K V SW  +I G    G   ++++
Sbjct: 132 KTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVD 191

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F  + +SG+ P+    V VL AC  +G ++ G R  +  ++E  L  N      +VD+ 
Sbjct: 192 LFRGLLESGLRPDGFVIVRVLRACARLGDLESG-RWIDRCMRECGLSRNVFVATSLVDMY 250

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            + G ++EA  + + M +  D+  W A++     +G
Sbjct: 251 TKCGSMEEARFVFDGM-VEKDIVCWSAMIQGYASNG 285



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 175/408 (42%), Gaps = 23/408 (5%)

Query: 14  IKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFST 73
           + +S++   I   +   S +     +   F     I S +  TG   D F  + ++ F +
Sbjct: 91  LYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYS 150

Query: 74  DLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT 133
               F+  ++  K+F  +   N   +  M+   I+    ++A+ L++ +L + +  D + 
Sbjct: 151 KC-GFLRDAW--KVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFV 207

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
              + +A A    +  G+ I   + + G   +V+V  +L++MY  CG +  AR +FD   
Sbjct: 208 IVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMV 267

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI-------IASNSMIVLFG--RKGNV 244
             D+V W++++ GY +     EA  ++ +M + N+       + + S     G    GN 
Sbjct: 268 EKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNW 327

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           A+    ++E     ++  ++LI  Y +    EEAL ++  M +     D VV  +V+S  
Sbjct: 328 AKGLMNYEEFLSNPVLG-TSLIDFYAKCGSMEEALGVYKMMKEK----DRVVFNAVISGL 382

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLIS- 362
           A    V A   V     K GI    +    L+   +  G +      F++  H+  +   
Sbjct: 383 AMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPT 442

Query: 363 ---WNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQ 406
              +  M+    + G +++A  L   M ++ +V+ W +++ G   H +
Sbjct: 443 IEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRE 490


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/802 (33%), Positives = 418/802 (52%), Gaps = 79/802 (9%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++CQ  +   QI  + I     A+ F  + +++             +F   A     N 
Sbjct: 34  LRQCQDLESVRQIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIA---RKND 89

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           + + +M+ AY Q    + A+ LYK M L  N  V  YT  L A AS   L   EGK IH 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVV--YTTVLGACASIEALE--EGKAIHS 145

Query: 156 HVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNV 213
            +    G   DV + N+L+ MYA CG L  A++LF+  S    + SWN+++A Y  + + 
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF 205

Query: 214 EEAKFIYNKM------------------------------------PERNIIASNSMIVL 237
           EEA  +Y  M                                     E ++   N+++ +
Sbjct: 206 EEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTM 265

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + R   + +A ++F+ +P++D+VSWSA+I+ + + ++++EA+  +  M    V  +    
Sbjct: 266 YARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 325

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            SVL ACA++  ++AG +VH                               +++   G+ 
Sbjct: 326 ASVLLACASVGDLRAGRAVH-------------------------------DQILGNGYK 354

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           + L++  +++  Y   GS+++AR+LFD +  +D   W+ +I GY++    +  L L+ EM
Sbjct: 355 ITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM 414

Query: 418 QHHGIRPDEATLVS-VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           ++    P    + S VISAC  L A    +  H+ I  +G+  + +L T+L++MY + G 
Sbjct: 415 KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGN 474

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +++A +VF     +   +W  LI G+A +G    +L ++ EM+  G  P+E+TF+ VL A
Sbjct: 475 LESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 534

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL ++G + F S+  ++ + PN  HY C++DLL RAG L +AEELI +MP+ P+  
Sbjct: 535 CSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDV 594

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
           TW +LLGA + H D +       ++ +L P     +VLLSN+HA  G    +  VR  MV
Sbjct: 595 TWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMV 654

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            RGV K  G S IE    IHEF  GD +HP+  EI   L  ++ K+K  GY P++ EV  
Sbjct: 655 ARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLH 714

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+ ++EKE  L  HSEKLAIAFGLI  +P   +RI   LRIC+DCH+A KFIS    REI
Sbjct: 715 DVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREI 774

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           +VRD  RFH F+ G CSC D+W
Sbjct: 775 IVRDSSRFHKFRDGQCSCGDYW 796


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/509 (43%), Positives = 327/509 (64%), Gaps = 6/509 (1%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      +L +   L +V     +HAL +K+G   +    NAL+  Y +      A ++F
Sbjct: 100 DHFTFPQILPSAQPLHLV---AQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVF 156

Query: 353 DAGHN-LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
             G   LD++SW +M+ G LK G  + AR LFD M E+++VSW+ M+SGY +  +F + L
Sbjct: 157 RGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDAL 216

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            +F EM+  G+  +     + + ACT   AL +G+ +H ++ ++G++++  L T ++DMY
Sbjct: 217 EVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMY 276

Query: 472 MKLGCVDNALEVFHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            K GCV+ A  VF       KG+++WN +I GFA++G  + +L++F  M++ GV P+++T
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVT 336

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            V VL AC H G++ EG  +FN + Q + +EP  +HYGCMVDL GRAG L+EA+++I+ M
Sbjct: 337 LVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           PM PDV   GAL GA K HGD ++GE +G +++EL P + G +VLL+N+ A+ GRW+DV 
Sbjct: 397 PMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVA 456

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR +M  R V K  G S+IE  G + EF  G   HP+  E+  M  +M ++++ EGY P
Sbjct: 457 RVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVP 516

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           DT +V   I +EEKET L  HSEKLAIAFGL+   P + +RI KNLR+C DCH A KF+S
Sbjct: 517 DTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVS 576

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R F+R+IVVRDR+RFHHFK G CSC D+W
Sbjct: 577 RVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/503 (44%), Positives = 314/503 (62%), Gaps = 4/503 (0%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL +   L  V  G  VH L ++IG++  + +  +LI +Y  CGEI  A K+FD     D
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-- 417
           + SWN++++GY K G ++ A A+F+ M  +++VSW+TMISGY+Q     + LSLF EM  
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G+RP+  T++SV+ AC  L  L++G+ IH    + GL  N+ +   L  MY K G +
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSL 319

Query: 478 DNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +A   F      EK + +WN +I  +A  G   +++  F EM ++G+ P++ITF G+L 
Sbjct: 320 VDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 379

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C H GLVD G ++FN M   + + P  +HY C+ DLLGRAG L EA +L+  MPM    
Sbjct: 380 GCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGP 439

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           + WG+LL AC+KH + EM E   RKL  L+P++ G +VLLSN++A  GRW +V ++R ++
Sbjct: 440 SIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIV 499

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
             +G  K PGCS IE NG  H FL GD +HPQ  EI   L+ + +K+K  GY PDT  V 
Sbjct: 500 KSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVL 559

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            DI +EEKE  L  HSEKLA+AFG++       +R+ KNLRIC DCHTA  FIS  + RE
Sbjct: 560 HDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGRE 619

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           ++VRD +RFHHFK G CSC D+W
Sbjct: 620 VIVRDINRFHHFKGGCCSCGDYW 642



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 67/325 (20%)

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
           N +G D +T+P + ++S   LSV+ GK +H  +L+ G   D+YV  +LI +Y  CG+++ 
Sbjct: 129 NGIG-DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIND 187

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNV 244
           A K+FD   + D+ SW                               N+++  + + G +
Sbjct: 188 AGKVFDNMTIRDVSSW-------------------------------NALLAGYTKSGCI 216

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLS 302
             A  +F+ MP +++VSW+ +IS Y Q+ + ++AL LF  M+  D  V  + V ++SVL 
Sbjct: 217 DAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLP 276

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA--GHNLDL 360
           ACA L+ ++ G  +H LA ++G+    ++  AL  MY+ CG +  A   FD    +  +L
Sbjct: 277 ACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNL 336

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           I+WN+MI+ Y   G   +A + F  MI+                                
Sbjct: 337 IAWNTMITAYASYGHGLQAVSTFREMIQA------------------------------- 365

Query: 421 GIRPDEATLVSVISACTHLVALDQG 445
           GI+PD+ T   ++S C+H   +D G
Sbjct: 366 GIQPDDITFTGLLSGCSHSGLVDVG 390



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 134/303 (44%), Gaps = 44/303 (14%)

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           LK G    A  L   +    +V  S M++ YA       ++S+F     +GI  D  T  
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVG-SKMVAFYASSGDIDSSVSVF-----NGIG-DYFTFP 138

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
            V+ +   L+++  GK +H  I + GL+ +  + T+LI +Y K G +++A +VF     +
Sbjct: 139 FVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR 198

Query: 491 GVSSWNAL-------------------------------IIGFAMNGLADKSLEMFSEMK 519
            VSSWNAL                               I G++ +GLA ++L +F EM 
Sbjct: 199 DVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMV 258

Query: 520 K--SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           K  SGV PN +T + VL AC  +  ++ G R  + +     L  N+     +  +  + G
Sbjct: 259 KEDSGVRPNWVTIMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVLIALTAMYAKCG 317

Query: 578 MLKEAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVL 634
            L +A    + +  +  ++  W  ++ A   +G         R++++  +QPD   F  L
Sbjct: 318 SLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGL 377

Query: 635 LSN 637
           LS 
Sbjct: 378 LSG 380



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 45/240 (18%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASA 142
           +  IF  +   N   + TM+  Y Q  + QQA+ L+  M+  + GV  N+   +    + 
Sbjct: 219 ALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 278

Query: 143 LRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE--SPVLDLVS 199
            +LS  E G+ IH+   + G +S+  V   L  MYA CG L  AR  FD+      +L++
Sbjct: 279 AQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIA 338

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIA------------SNSMIV----------- 236
           WN+++  Y +  +  +A   + +M +  I              S+S +V           
Sbjct: 339 WNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMS 398

Query: 237 -----------------LFGRKGNVAEACRLFKEMPKKDLVS-WSALISCYEQNEMYEEA 278
                            L GR G +AEA +L  EMP     S W +L++   ++   E A
Sbjct: 399 TTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 458


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/753 (34%), Positives = 410/753 (54%), Gaps = 74/753 (9%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASA 142
           ++ +F  +   N F +N ++  Y ++    +AICLY  ML    V  D YT+P + +   
Sbjct: 148 AWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCG 207

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
               +  G+ +H HV++ G++ D+ V N LI MY  CGD+ +AR LFD  P  D++SWN+
Sbjct: 208 GIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNA 267

Query: 203 ILAGY--------------------VNAD------NVEEAKFIYNKMPERNIIA------ 230
           +++GY                    V+ D       +   + + ++   R+I A      
Sbjct: 268 MISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327

Query: 231 -------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                   NS+  ++   G+  EA +LF  M  KD+VSW+ +IS YE N + E+A+  + 
Sbjct: 328 FAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYR 387

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V  DE+ V +VLSACA L  +  G  +H LA+K  +  Y+ + N LI+MYS   
Sbjct: 388 MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYS--- 444

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                                       KC  ++KA  +F  +  K+V+SW+++I+G   
Sbjct: 445 ----------------------------KCKCIDKALDIFHNIPRKNVISWTSIIAGLRL 476

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +++  E L  F +M+   ++P+  TL + ++AC  + AL  GK IHA++ + G+ ++  L
Sbjct: 477 NNRCFEALIFFRQMKM-TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFL 535

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              L+DMY++ G ++ A   F+ +++K VSSWN L+ G++  G     +E+F  M K+ V
Sbjct: 536 PNALLDMYVRCGRMNIAWNQFN-SQKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARV 594

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+EITF+ +L  C    +V +G  +F+ M +E+ + PN KHY C+VDLLGRAG L+EA 
Sbjct: 595 RPDEITFISLLCGCGKSQMVRQGLMYFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           + I+ MP++PD A WGALL AC+ H + ++GE   +++ EL     G+++LL N++A  G
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCG 713

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +W +V +VR MM   G+    GCS +E  G +H FL+ D+ HPQ  EI+ +LD   +K+ 
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMS 773

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             G    +   + D  +  ++     HSE+ AIAFGLI   P  PI + KNL +C  CH 
Sbjct: 774 EVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHD 833

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             KFIS+   REI VRD   FHHFK G CSC D
Sbjct: 834 TVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 255/595 (42%), Gaps = 97/595 (16%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           ++A+ L   M    V VD   +  L +    + +  EG  ++   L +     V + N  
Sbjct: 76  EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAF 135

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--------- 223
           + M+   G+L  A  +F +    +L SWN ++ GY      +EA  +Y++M         
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPD 195

Query: 224 -------------------------------PERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E +I   N++I ++ + G+V  A  LF 
Sbjct: 196 VYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            MP++D++SW+A+IS Y +N M  E L LF  M    V  D + + SV+SAC  L   + 
Sbjct: 256 RMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +HA  +  G    I++ N+L  MY   G    AEKLF      D++SW +MISGY  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEY 375

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
               EKA                  I  Y   DQ S             ++PDE T+ +V
Sbjct: 376 NFLPEKA------------------IDTYRMMDQDS-------------VKPDEITVAAV 404

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +SAC  L  LD G  +H    K  L    I+   LI+MY K  C+D AL++FH    K V
Sbjct: 405 LSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNV 464

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV---DEGHRH 549
            SW ++I G  +N    ++L  F +MK + + PN IT    L AC  +G +    E H H
Sbjct: 465 ISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAH 523

Query: 550 -FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
              + +      PN+     ++D+  R G +  A     S     DV++W  LL    + 
Sbjct: 524 VLRTGVGLDDFLPNA-----LLDMYVRCGRMNIAWNQFNS--QKKDVSSWNILLTGYSER 576

Query: 609 GDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           G   +   +  ++V+  ++PD   F  LL     S+            MVR+G++
Sbjct: 577 GQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQ------------MVRQGLM 619



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 34/334 (10%)

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N   EEA+ L  +M + RV VDE V V+++  C      + G+ V+++A+       + L
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVEL 131

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NA + M+                               ++ G++  A  +F  M E+++
Sbjct: 132 GNAFLAMF-------------------------------VRFGNLVDAWYVFGKMSERNL 160

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            SW+ ++ GYA+   F E + L+  M    G++PD  T   V+  C  +  L +G+ +H 
Sbjct: 161 FSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHV 220

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           ++ + G +++  +   LI MY+K G V +A  +F     + + SWNA+I G+  NG+  +
Sbjct: 221 HVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHE 280

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
            L++F  M+   V P+ +T   V+ AC  +G    G R  ++ +       +      + 
Sbjct: 281 GLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLG-RDIHAYVITTGFAVDISVCNSLT 339

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            +   AG  +EAE+L   M    D+ +W  ++  
Sbjct: 340 QMYLYAGSWREAEKLFSRMD-CKDIVSWTTMISG 372


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/635 (37%), Positives = 364/635 (57%), Gaps = 34/635 (5%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           DV   N++I+    CGD++ A KLFDE P   +VSW +++ G   +  V++A+ ++ +MP
Sbjct: 96  DVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMP 155

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            ++  A NSM+  + + G V +A +LFK+MP K+++SW+ +I   +QNE   EAL LF N
Sbjct: 156 VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKN 215

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   +         V++ACAN      G  VH L +K+G          L   Y S   
Sbjct: 216 MLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGF---------LYEEYVSA-- 264

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                               S+I+ Y  C  +  +R +FD  + + V  W+ ++SGY+ +
Sbjct: 265 --------------------SLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLN 304

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
            +  + LS+F  M  + I P+++T  S +++C+ L  LD GK +H    K GL+ ++ +G
Sbjct: 305 KKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVG 364

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
            +L+ MY   G V++A+ VF    +K + SWN++I+G A +G    +  +F +M +    
Sbjct: 365 NSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKE 424

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           P+EITF G+L AC H G +++G + F  M    + ++   +HY CMVD+LGR G LKEAE
Sbjct: 425 PDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAE 484

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           ELIE M + P+   W ALL AC+ H D + GE+    +  L       +VLLSNI+AS G
Sbjct: 485 ELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAG 544

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RW +V ++R  M + G++K PG S +   G  HEF +GD+  P  + I   L+ + +KLK
Sbjct: 545 RWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLK 602

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GYAPD      D++ E+KE  L+ HSE+LAIAFGLI     + + +MKNLR+C DCHT
Sbjct: 603 ELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHT 662

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K IS    REIV+RD  RFHHFK+G+CSC D+W
Sbjct: 663 VIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 208/437 (47%), Gaps = 45/437 (10%)

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           ++  ++ +  ++EA+ ++N++P  ++     MI  + R   + +A  LF EMP +D+VSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 263 SALIS-CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           +++IS C E  +M   A+ LF          DE+   SV+S                   
Sbjct: 101 NSMISGCVECGDM-NTAVKLF----------DEMPERSVVS------------------- 130

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
                       A+++     G++  AE+LF      D  +WNSM+ GYL+ G V+ A  
Sbjct: 131 ----------WTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALK 180

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           LF  M  K+V+SW+TMI G  Q+++  E L LF  M    I+        VI+AC +  A
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              G  +H  I K G      +  +LI  Y     + ++ +VF     + V+ W AL+ G
Sbjct: 241 FHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSG 300

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +++N   + +L +FS M ++ + PN+ TF   L +C  +G +D G +  + +  +  LE 
Sbjct: 301 YSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG-KEMHGVAVKLGLET 359

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           ++     +V +   +G + +A  +   +     + +W +++  C +HG  +    +  ++
Sbjct: 360 DAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQM 418

Query: 622 VEL--QPDHDGFHVLLS 636
           + L  +PD   F  LLS
Sbjct: 419 IRLNKEPDEITFTGLLS 435



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 186/425 (43%), Gaps = 48/425 (11%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
           + DT A + ++      L F ++  + K+F  +   N   + TM+    Q     +A+ L
Sbjct: 156 VKDTAAWNSMVH---GYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDL 212

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           +K ML   +   +  +  +  A A   +   G  +H  ++K GF  + YV+ +LI  YA 
Sbjct: 213 FKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYAN 272

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS- 231
           C  +  +RK+FDE     +  W ++L+GY      E+A  I++ M      P ++  AS 
Sbjct: 273 CKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASG 332

Query: 232 --------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                                           NS++V++   GNV +A  +F ++ KK +
Sbjct: 333 LNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSI 392

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HA 318
           VSW+++I    Q+   + A V+F  MI      DE+    +LSAC++   ++ G  + + 
Sbjct: 393 VSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYY 452

Query: 319 LAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAG-HNLDLISWNSMISGYLKCGSV 376
           ++  I  I+  I     ++ +   CG++  AE+L +      + + W +++S       V
Sbjct: 453 MSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDV 512

Query: 377 ---EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
              EKA A    +  K   ++  + + YA   ++S    L ++M+ +GI     +   VI
Sbjct: 513 DRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVI 572

Query: 434 SACTH 438
               H
Sbjct: 573 RGKKH 577


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/592 (39%), Positives = 331/592 (55%), Gaps = 40/592 (6%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           +VA A ++F E+P+++++  + +I  Y  N  Y E + +F  M    V  D      VL 
Sbjct: 90  DVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLK 149

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           AC+    +  G  +H  A K+G+   + + N L+ MY  CG ++ A  + D     D++S
Sbjct: 150 ACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 209

Query: 363 WNSMISGYLK----------CGSVEKARALFDA--------------------------- 385
           WNS+++GY +          C  +E  +   DA                           
Sbjct: 210 WNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFK 269

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +K +VSW+ MI  Y ++    E + L+  M+  G  PD  ++ SV+ AC    AL  G
Sbjct: 270 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLG 329

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K IH YI +  L  N +L   LIDMY K GC+D A +VF   + + V SW A+I  +  +
Sbjct: 330 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFS 389

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G    ++ +FS+M+ SG+ P+ I FV  L AC H GL++EG   F  M   +++ P  +H
Sbjct: 390 GRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 449

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
             CMVDLLGRAG +KEA + I+ MPM P+   WGALLGAC+ H + ++G     KL +L 
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLA 509

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+  G++VLLSNI+A  GRW++V  +R +M  +G+ K PG S +E N IIH FL GDR+H
Sbjct: 510 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ  EI   LD + KK+K  GY PD+     D+++E+KET L  HSEKLAI F L+    
Sbjct: 570 PQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEE 629

Query: 746 P---NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
               N IRI KNLRIC DCH AAK IS+   REI++RD +RFH F+ G CSC
Sbjct: 630 EDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 229/509 (44%), Gaps = 74/509 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ + K+F  +   N  I N M+R+Y+     ++ I ++  M + +V  D+YT+P + +
Sbjct: 90  DVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLK 149

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  GK IH    K G  S ++V N L++MY  CG LS AR + DE    D+VS
Sbjct: 150 ACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 209

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKE 253
           WNS++AGY      ++A  +  +M    I      +AS    V      NV     +F +
Sbjct: 210 WNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFK 269

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M KK LVSW+ +I  Y +N M  EA+ L+  M       D V + SVL AC + + +  G
Sbjct: 270 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLG 329

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    +  +   + L+NALI MY+ CG +  A  +F+   + D++SW +MIS Y   
Sbjct: 330 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFS 389

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G                               +  + ++LF +MQ  G+ PD    V+ +
Sbjct: 390 G-------------------------------RGCDAVALFSKMQDSGLVPDSIAFVTTL 418

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           +AC+H   L++G+     +  +  KI   L          L C+ + L            
Sbjct: 419 AACSHAGLLEEGRSCFKLM-TDHYKITPRL--------EHLACMVDLL------------ 457

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
                       G A K  E +  +++  + PNE  +  +LGACR     D G    + +
Sbjct: 458 ------------GRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKL 505

Query: 554 IQEHRLEP-NSKHYGCMVDLLGRAGMLKE 581
            Q   L P  S +Y  + ++  +AG  +E
Sbjct: 506 FQ---LAPEQSGYYVLLSNIYAKAGRWEE 531



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 39/312 (12%)

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +K   +VH+  +   +    +L   L+  Y+S  ++ TA K+F                 
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVF----------------- 98

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                         D + E++V+  + MI  Y  +  + E + +F  M    ++PD  T 
Sbjct: 99  --------------DEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTF 144

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
             V+ AC+    +  GK IH    K GL     +G  L+ MY K G +  A  V      
Sbjct: 145 PCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 204

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V SWN+L+ G+A N   D +LE+  EM+   ++ +  T   +L A  +     E   +
Sbjct: 205 RDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMY 262

Query: 550 FNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALLGAC 605
              M    ++   S   +  M+ +  +  M  EA EL   M      PD  +  ++L AC
Sbjct: 263 VKDMF--FKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 606 KKHGDHEMGERV 617
                  +G+++
Sbjct: 321 GDTSALSLGKKI 332



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 6/216 (2%)

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + +H+ I    L+ NS LG  L+  Y  L  V  A +VF    E+ V   N +I  +  N
Sbjct: 60  RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G   + +++F  M    V P+  TF  VL AC   G +  G +   S     ++  +S  
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSAT---KVGLSSTL 176

Query: 566 Y--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +    +V + G+ G L EA  +++ M    DV +W +L+    ++   +    V R++  
Sbjct: 177 FVGNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVAGYAQNQRFDDALEVCREMES 235

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ++  HD   +       S    ++V+ V+ M  + G
Sbjct: 236 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 271


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/602 (39%), Positives = 354/602 (58%), Gaps = 36/602 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           ++S++       ++++A+ I+  +       S    NS+I L+ + G VA+A R+F  MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +D+ SW++LI+ Y QN+M +EAL L   M+  R   +     S+L A         G  
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HAL VK      + + +AL+ MY+                               +CG 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYA-------------------------------RCGR 215

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +I+G+A+      TL +F EMQ +G      T  SV SA
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              + AL+QGKW+HA++ K+G ++++ +G T++DMY K G + +A +VF   ++K V +W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N+++  FA  GL  +++  F EM+K GV  N+ITF+ +L AC H GLV EG ++F+ M++
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMK 394

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP   HY  +VDLLGRAG+L +A   I  MPM P  A WGALLG+C+ H + ++G+
Sbjct: 395 EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQ 454

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + EL PD  G  VLL NI+AS G+WD    VR MM   GV K P CS +E    +
Sbjct: 455 FAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 514

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI    +E++ +++  GY P+T  V   +D++E++  L  HSEK+A
Sbjct: 515 HMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIA 574

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A ++IS+ F REIVVRD +RFHHF  GSCSC 
Sbjct: 575 LAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCG 634

Query: 796 DF 797
           D+
Sbjct: 635 DY 636



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 181/406 (44%), Gaps = 71/406 (17%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  L  A A   S+ + + IH H+  + F   V+++N+LI++Y  CG ++ AR++FD  P
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 194 VLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP------------------- 224
             D+ SW S++AGY   D  +EA          +F  N                      
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 225 ----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALI+ + +   
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            E  L++F  M  +          SV SA A +  ++ G  VHA  +K G      + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           ++ MY+  G +  A K+FD     D+++WNS                             
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNS----------------------------- 337

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
             M++ +AQ+    E ++ F EM+  G+  ++ T +S+++AC+H   + +GK     +++
Sbjct: 338 --MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALI 499
             L+       T++D+  + G +++AL  +F    +   + W AL+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 145/302 (48%), Gaps = 39/302 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + + +   + +++  Y Q ++P +A+ L   ML      + +T+  L +A+    
Sbjct: 120 RVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASA 179

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S   G+ IH   +K  +  DVYV + L++MYA CG +  A  +FD+    + VSWN+++A
Sbjct: 180 SSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA 239

Query: 206 GYVNADN-----------------------------------VEEAKFIYNKM---PER- 226
           G+    +                                   +E+ K+++  M    ER 
Sbjct: 240 GFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERL 299

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +    N+++ ++ + G++ +A ++F  + KKD+V+W+++++ + Q  +  EA+  F  M 
Sbjct: 300 SAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMR 359

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V ++++  +S+L+AC++  +VK G     +  +  +E  I+    ++ +    G + 
Sbjct: 360 KCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLN 419

Query: 347 TA 348
            A
Sbjct: 420 DA 421



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  +  +F  LES NG  +N ++  + ++   +  + ++  M  N     ++TY  +  
Sbjct: 215 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 274

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +GK +H H++K+G     +V NT+++MYA  G +  ARK+FD     D+V+
Sbjct: 275 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVT 334

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           WNS+L  +       EA   + +M +     N I   S++      G V E  + F  M 
Sbjct: 335 WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK 394

Query: 256 KKDL 259
           + +L
Sbjct: 395 EYNL 398


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/763 (35%), Positives = 402/763 (52%), Gaps = 78/763 (10%)

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L+ F E+ +++++FA +   + F +N M+  Y +    ++A+ LY  ML   +  D YT+
Sbjct: 141 LVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTF 200

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + +          G+ +H HVL+ GF  +V V N L+ MYA CGD+ AARK+FD   V
Sbjct: 201 PCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAV 260

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI-----------IAS------------ 231
            D +SWN+++AG+      E    ++  M E  +           +AS            
Sbjct: 261 TDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEM 320

Query: 232 ----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                           NS+I ++   G + +A ++F  M  KD +SW+A+IS YE+N   
Sbjct: 321 HGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFP 380

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           ++AL ++  M  H V  D+V + S L+ACA L  +  G  +H LA   G   Y+ + NAL
Sbjct: 381 DKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANAL 440

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               K   ++KA  +F  M EKDVVSWS
Sbjct: 441 LEMYA-------------------------------KSKHIDKAIEVFKFMAEKDVVSWS 469

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +MI+G+  + +  E L  F  M  H ++P+  T ++ +SAC    AL  GK IHAY+ + 
Sbjct: 470 SMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRC 528

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+     +   L+D+Y+K G    A   F    EK V SWN ++ GF  +GL D +L +F
Sbjct: 529 GIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLF 588

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           ++M + G  P+E+TFV +L AC   G+V +G   F+ M ++  + PN KHY CMVDLL R
Sbjct: 589 NQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSR 648

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G L EA  LI  MP+ PD A WGALL  C+ H   E+GE   + ++EL+P+   +HVLL
Sbjct: 649 VGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLL 708

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            +++   G+W  V  VR  M  +G+ +  GCS +E  G+ H FL  D +HPQI EI+ +L
Sbjct: 709 CDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVL 768

Query: 696 DEMAKKLKLEGYAP-DTLEVAFDIDQEEKE-TTLFRHSEKLAIAFGLITISPPNPIRIMK 753
             + +++K  G+AP ++LE     D+E  E   L  HSE+LA+AFGLI  +P   I + K
Sbjct: 769 HGIYERMKACGFAPVESLE-----DKEVSEDDILCGHSERLAVAFGLINTTPGTTISVTK 823

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           N   C  CH   K IS    REI VRD  + H FK G CSC D
Sbjct: 824 NRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 224/505 (44%), Gaps = 64/505 (12%)

Query: 175 MYAVC--GDLSAARKLFDESP----------VLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           + A+C  G L+ A  L + SP          +  L  W   +   + A    +A+     
Sbjct: 71  LRALCSHGQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEH---- 126

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
            P   +   N+M+ +  R G +  A R+F +MP++D+ SW+ ++  Y +    EEAL L+
Sbjct: 127 -PSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLY 185

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M+   +  D      VL  C  +   + G  VHA  ++ G    +++ NAL+ MY+ C
Sbjct: 186 YRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKC 245

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G+I  A K+FD     D ISWN+MI+G+ +    E    LF  M+E +V           
Sbjct: 246 GDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEV----------- 294

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
                               +P+  T+ SV  A   L  +   K +H +  K G  I+  
Sbjct: 295 --------------------QPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVA 334

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
              +LI MY  LG + +A ++F   E K   SW A+I G+  NG  DK+LE+++ M+   
Sbjct: 335 FCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHN 394

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY------GCMVDLLGRA 576
           V+P+++T    L AC  +G +D G       I+ H L  N            ++++  ++
Sbjct: 395 VSPDDVTIASALAACACLGRLDVG-------IKLHELAQNKGFIRYVVVANALLEMYAKS 447

Query: 577 GMLKEAEELIESMPMSPDVATWGALL-GACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
             + +A E+ + M    DV +W +++ G C  H   E        L  ++P+   F   L
Sbjct: 448 KHIDKAIEVFKFM-AEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAAL 506

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGV 660
           S   A+ G      E+   ++R G+
Sbjct: 507 SAC-AATGALRSGKEIHAYVLRCGI 530


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/727 (36%), Positives = 388/727 (53%), Gaps = 76/727 (10%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           Q  I + KL +   +        L+ Q   ++ S+ +   I  H LK GF   +   N L
Sbjct: 60  QSNIKIRKLCITETIQSTKLYSSLIQQCIGIK-SITDITKIQSHALKRGFHHSL--GNKL 116

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER 226
           I+ Y  CG +  ARK+FDE P   +V+WNS++A Y+     +EA  IY +M      P+ 
Sbjct: 117 IDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDE 176

Query: 227 ----------------------------------NIIASNSMIVLFGRKGNVAEACRLFK 252
                                             N+   ++++ ++ + G + +A  +  
Sbjct: 177 FTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSD 236

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           ++  KD+V ++ALI  Y  +    E+L +F NM    +  +E  + SVL  C NL  + +
Sbjct: 237 QVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTS 296

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H L VK G+E  +  Q +L+ MY  CG +  + K+F    N + ++W S+I G ++
Sbjct: 297 GRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQ 356

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G  E A                               L  F +M    I P+  TL SV
Sbjct: 357 NGREEIA-------------------------------LLKFRQMLRSSITPNSFTLSSV 385

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + AC+ L  L+QGK IHA + K GL I+  +G  LID Y K G  + A  VF+G  E  V
Sbjct: 386 LRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDV 445

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            S N++I  +A NG   ++L++FS MK +G+ PN +T++GVL AC + GL++EG   F+S
Sbjct: 446 VSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSS 505

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
                 +E    HY CMVDLLGRAG LKEAE LI  + +S DV  W  LL AC+ HGD E
Sbjct: 506 ARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVE 564

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           M +RV  ++++L P+  G HVLLSN++AS G W  V+E++  M    + K P  S ++  
Sbjct: 565 MAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVE 624

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             IH F+AGD +HP   +I   L+E+ +K+K  GY PDT  V  D+D+E+K  +L+ HSE
Sbjct: 625 REIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSE 684

Query: 733 KLAIAFGLITISPPN-PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           KLA+AF L   +  N  IRI+KNLR+C DCHT  KF+S+   R+I+ RD  RFHHF++G 
Sbjct: 685 KLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGL 744

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 745 CSCGDYW 751



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 116/511 (22%), Positives = 223/511 (43%), Gaps = 74/511 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           +Q+C   K  T I    I +  +   F  S   K     L    + Y+ K+F  +   + 
Sbjct: 84  IQQCIGIKSITDITK--IQSHALKRGFHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHI 141

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N+M+ +YI+    ++AI +Y+ M+ + +  D +T+  + +A +    V EG+  H  
Sbjct: 142 VAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQ 201

Query: 157 VLKAGFD-SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            +  G   S+V+V + L++MYA  G +  AR + D+    D+V + +++ GY +     E
Sbjct: 202 SVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGE 261

Query: 216 AKFIYNKMPERNIIAS---------------------------------------NSMIV 236
           +  ++  M ++ I A+                                        S++ 
Sbjct: 262 SLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLT 321

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ R G V ++ ++FK+    + V+W+++I    QN   E AL+ F  M+   +  +   
Sbjct: 322 MYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFT 381

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + SVL AC++L +++ G  +HA+ +K G++    +  ALI  Y  CG    A  +F+   
Sbjct: 382 LSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLL 441

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
            +D++S NSMI  Y                               AQ+    E L LF  
Sbjct: 442 EVDVVSVNSMIYSY-------------------------------AQNGFGHEALQLFSG 470

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLG 475
           M+  G+ P+  T + V+SAC +   L++G  I +  R +G +++       ++D+  + G
Sbjct: 471 MKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAG 530

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +  A  + +      V  W  L+    ++G
Sbjct: 531 RLKEAEMLINQVNISDVVIWRTLLSACRIHG 561


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/525 (43%), Positives = 320/525 (60%), Gaps = 27/525 (5%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL LF +++      D V     L  CA     +A   +H+ A K G   +  + N LIH
Sbjct: 62  ALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIH 121

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            Y+ CG +  A K+FD GH  D ++WNS++ GY   G V   R  F  M  +D VSW+T+
Sbjct: 122 AYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTI 181

Query: 398 ISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I+   ++ ++ E +++F EM       PD  TL               GK         G
Sbjct: 182 IAWCVENGEYEEAIAVFREMLASMECLPDRVTLFP-------------GK---------G 219

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           +++   L + LI+MY K  C++ A+ VF     +  V +WNA++ GF  NG ++K+LE+F
Sbjct: 220 IEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELF 279

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           + M+ +G+ PN+ITF  VL AC H G V+EG   F  M + + +EP+  HYGCMVDL  R
Sbjct: 280 ARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCR 339

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP-DHDGFHVL 634
           AG+  +AE++I+ MPM PD A W AL+GACK H + E+G + G  L+E  P DH G+ VL
Sbjct: 340 AGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGY-VL 398

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A  G W  V +VR +M+ RGV K+PG S IE +G+IHEF++GD++H    +I  M
Sbjct: 399 LSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEM 458

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           L EM ++LK+ GY PDT  V  DID E+ KE++L  HSEKLAIAFGLI+ +P  PIRI K
Sbjct: 459 LSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAK 518

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH A K +S+ + R I+VRD +RFHHF+ GSCSC DFW
Sbjct: 519 NLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 150/340 (44%), Gaps = 39/340 (11%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           PQ A+ L+  +L +    D+  Y L     A          +H H  K G  S   V N 
Sbjct: 59  PQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNG 118

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           LI+ YAVCG L  ARK+FD     D V+WNS+L GY  A +V   +  +  M  R+ ++ 
Sbjct: 119 LIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSW 178

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM---IDH 288
           N++I      G   EA  +F+EM    L S   L           + + LF      ++ 
Sbjct: 179 NTIIAWCVENGEYEEAIAVFREM----LASMECL----------PDRVTLFPGKGIEVEE 224

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           R+      ++++ S CA +       +VH     +G +  ++  NA++  +++ G    A
Sbjct: 225 RL---SSALINMYSKCACIE-----GAVHVFE-NLGAQMNVDTWNAMLAGFTANGCSEKA 275

Query: 349 EKLFD----AGHNLDLISWNSMISGYLKCGSVEKARALFDAM-----IEKDVVSWSTMIS 399
            +LF      G   + I++N++++     G VE+    F+ M     IE D+  +  M+ 
Sbjct: 276 LELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVD 335

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC-TH 438
            + +   F +   +   M    ++PD A   +++ AC TH
Sbjct: 336 LFCRAGLFDKAEKMIQMMP---MKPDAAVWKALVGACKTH 372


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/646 (38%), Positives = 367/646 (56%), Gaps = 41/646 (6%)

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADNV 213
           D++ K      ++  N +I      GD+  A ++F      + ++WNS+L G   +   +
Sbjct: 50  DYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRM 109

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
            EA  +++++PE +  + N M+  + R  N  +A   F  MP KD  SW+ +I+ Y +  
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             E+A  LF +M++     +EV                                     N
Sbjct: 170 EMEKARELFYSMMEK----NEVS-----------------------------------WN 190

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF-DAMIEKDVV 392
           A+I  Y  CG++  A   F       +++W +MI+GY+K   VE A A+F D  + K++V
Sbjct: 191 AMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLV 250

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           +W+ MISGY ++ +  + L LF  M   GIRP+ + L S +  C+ L AL  G+ IH  +
Sbjct: 251 TWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV 310

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K+ L  +    T+LI MY K G + +A ++F   ++K V +WNA+I G+A +G ADK+L
Sbjct: 311 SKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F EM  + + P+ ITFV VL AC H GLV+ G  +F SM++++++EP   HY CMVDL
Sbjct: 371 CLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG L+EA +LI SMP  P  A +G LLGAC+ H + E+ E    KL++L   +   +
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGY 490

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           V L+NI+ASK RW+DV  VR  M    VVK+PG S IE    +H F + DR HP+++ I 
Sbjct: 491 VQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L E+ KK+KL GY P+      ++++E+KE  L  HSEKLA+AFG I +   + I++ 
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC DCH A KFIS    REI+VRD  RFHHFK GSCSC D+W
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 185/378 (48%), Gaps = 37/378 (9%)

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A  +R    +G L   H ++A   + +  N+ LI +      +  A +LFDE P  D  S
Sbjct: 69  ARCVRSGDIDGALRVFHGMRA--KNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFS 126

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           +N +L+ YV   N E+A+  +++MP ++  + N+MI  + R+G + +A  LF  M +K+ 
Sbjct: 127 YNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNE 186

Query: 260 VSWSALISCYEQNEMYEEA-----------LVLFMNMIDHRVMVDEVVVVSV----LSAC 304
           VSW+A+IS Y +    E+A           +V +  MI   +   +V +       ++  
Sbjct: 187 VSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVN 246

Query: 305 ANLTVVKAGTS--VHALAVKIGIECYINLQNALIHMYSS--------CGEITTAEKLFDA 354
            NL    A  S  V     + G++ +  +    I   SS        C E+ +A +L   
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL-SALQLGRQ 305

Query: 355 GHNL--------DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            H +        D+ +  S+IS Y KCG +  A  LF+ M +KDVV+W+ MISGYAQH  
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGN 365

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
             + L LF EM  + IRPD  T V+V+ AC H   ++ G  +  + +R   ++      T
Sbjct: 366 ADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYT 425

Query: 466 TLIDMYMKLGCVDNALEV 483
            ++D+  + G ++ AL++
Sbjct: 426 CMVDLLGRAGKLEEALKL 443



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 48/205 (23%)

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN--YTYPLL--AQASALRLSVFEG 150
           N   +N M+  Y++ + P+  + L++ ML   +  ++   +  LL  ++ SAL+L    G
Sbjct: 248 NLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL----G 303

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + IH  V K+   +DV    +LI+MY  CG+L  A KLF+     D+V+WN++++GY   
Sbjct: 304 RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQH 363

Query: 211 DNVEEAKFIYNKMPERNI-----------IASN--------------------------- 232
            N ++A  ++ +M +  I           +A N                           
Sbjct: 364 GNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH 423

Query: 233 --SMIVLFGRKGNVAEACRLFKEMP 255
              M+ L GR G + EA +L + MP
Sbjct: 424 YTCMVDLLGRAGKLEEALKLIRSMP 448



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 21/236 (8%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           + L   Q  +Q  QI+S+   + L  D  A + LI          E+  ++K+F  ++  
Sbjct: 295 SELSALQLGRQIHQIVSK---STLCNDVTALTSLISMYCKCG---ELGDAWKLFEVMKKK 348

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLLAQASA----LRLSVF 148
           +   +N M+  Y Q     +A+CL++ M++N +  D  T+   LLA   A    + ++ F
Sbjct: 349 DVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYF 408

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           E  ++ D+  K     D Y    ++++    G L  A KL    P     +    L G  
Sbjct: 409 ES-MVRDY--KVEPQPDHYT--CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGAC 463

Query: 209 NA-DNVEEAKFIYNKMPERNIIASNSMIVL---FGRKGNVAEACRLFKEMPKKDLV 260
               NVE A+F   K+ + N   +   + L   +  K    +  R+ K M + ++V
Sbjct: 464 RVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVV 519


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/654 (37%), Positives = 372/654 (56%), Gaps = 39/654 (5%)

Query: 154 HDHVLKAGFD-------SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            +H L+   D        DV   N++I     CGD+  ARKLFDE P   +VSW +++ G
Sbjct: 98  QNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDG 157

Query: 207 YVNADNVEEAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
            +    V+EA+ ++  M   +R++ A N+MI  +   G V +A +LF +MP +D++SWS+
Sbjct: 158 LLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSS 217

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+  + N   E+ALVLF +M+   V +   V+V  LSA A +   + G  +H    K+G
Sbjct: 218 MIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLG 277

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
                                   +  FD     + +S  S+++ Y  C  +E A  +F 
Sbjct: 278 ------------------------DWHFD-----EFVS-ASLVTFYAGCKQMEAACRVFG 307

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            ++ K VV W+ +++GY  +D+  E L +F EM    + P+E++  S +++C  L  +++
Sbjct: 308 EVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIER 367

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK IHA   K GL+    +G +L+ MY K G V +A+ VF G  EK V SWN++I+G A 
Sbjct: 368 GKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQ 427

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G    +L +F++M + GV P+ IT  G+L AC H G++ +    F    Q+  +    +
Sbjct: 428 HGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIE 487

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY  MVD+LGR G L+EAE ++ SMPM  +   W ALL AC+KH + ++ +R   ++ E+
Sbjct: 488 HYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEI 547

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +PD    +VLLSN++AS  RW +V  +R  M   GVVK PG S +   G  H+FL+ DR+
Sbjct: 548 EPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRS 607

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP   +I   L+ +  KLK  GY PD      D++ E+KE  L  HSE+LAIAFGL++  
Sbjct: 608 HPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTV 667

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             + I +MKNLR+C DCH A K +++  DREIVVRD  RFH FK+G CSC D+W
Sbjct: 668 EGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGDYW 721


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/636 (37%), Positives = 351/636 (55%), Gaps = 40/636 (6%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           N +L  Y     + +A+ +++KM +R+I + N+++  + + G++      F  MP +D V
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           S++  I+ +  N   +E+L LF  M        E  +VS+L+A A L+ ++ G  +H   
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK-------- 372
           +       + + NAL  MY+ CGEI  A  LFD     +L+SWN MISGY K        
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 373 ---------------------------CGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                      CG V++AR +F    EKD+V W+ M+ GYA++ 
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNG 301

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  + L LF EM    I PD  TL SV+S+C  L +L  G+ +H      GL  N ++ +
Sbjct: 302 REEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSS 361

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LIDMY K G +D+A  VF+    + V SWNA+I+G A NG    +LE+F  M +    P
Sbjct: 362 ALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKP 421

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +TF+G+L AC H   +++G  +F+S+  +H + P   HY CMV+LLGR G +++A  L
Sbjct: 422 DNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVAL 481

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I++M   PD   W  LL  C   GD    E   R L EL P     +++LSN++AS GRW
Sbjct: 482 IKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRW 541

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            DV  VR +M  + V K  G S IE +  +H F + DRTHP+  +I   L+ +  KL+ E
Sbjct: 542 KDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEE 601

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN---PIRIMKNLRICNDCH 762
           G+ P+T  V  D+ ++EK  ++  HSEKLA+AFGL  I  PN   PIRI+KN+RICNDCH
Sbjct: 602 GFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGL--IKKPNGISPIRIIKNIRICNDCH 659

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              KF SR   R+I++RD +RFHHF  G CSC D W
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 177/354 (50%), Gaps = 39/354 (11%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +NT +  +   + PQ+++ L+K M         YT   +  ASA    +  GK IH  ++
Sbjct: 123 YNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSII 182

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
              F  +V++ N L +MYA CG++  AR LFD     +LVSWN +++GY      E+   
Sbjct: 183 VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIG 242

Query: 219 IYNK------MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           + ++      MP++  +  +++I  + + G V EA R+F E  +KD+V W+A++  Y +N
Sbjct: 243 LLHQMRLSGHMPDQ--VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
              E+AL+LF  M+   +  D   + SV+S+CA L  +  G +VH  ++  G+   + + 
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           +ALI MYS CG I  A  +F+     +++SWN+MI G  + G                  
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNG------------------ 402

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                      HD+  + L LF  M     +PD  T + ++SAC H   ++QG+
Sbjct: 403 -----------HDK--DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 173/342 (50%), Gaps = 7/342 (2%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L N L+H+Y+  G++  A+ LFD     D+ SWN+++S Y K GS++  +A FD M  +D
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            VS++T I+G++ +    E+L LF  MQ  G  P E T+VS+++A   L  L  GK IH 
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHG 179

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            I       N  +   L DMY K G ++ A  +F    +K + SWN +I G+A NG  +K
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
            + +  +M+ SG  P+++T   ++ A    G VDE  R F+   ++  +   +   G   
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV-GRKLVELQPDHD 629
           +      +L   E L+E   + PD  T  +++ +C K      G+ V G+ ++    ++ 
Sbjct: 300 NGREEDALLLFNEMLLEH--IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK----IPGCS 667
                L ++++  G  DD   V  +M  R VV     I GC+
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCA 399



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 44/260 (16%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           +L QM L+G + D    S +I          E   + ++F+  +  +   +  MM  Y +
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDE---ARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
               + A+ L+  ML  ++  D+YT   +  + A   S+  G+ +H   + AG ++++ V
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           ++ LI+MY+ CG +  AR +F+  P  ++VSWN+++ G     + ++A  ++  M ++  
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 229 IASN----------------------------------------SMIVLFGRKGNVAEAC 248
              N                                         M+ L GR G + +A 
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 249 RLFKEMP-KKDLVSWSALIS 267
            L K M    D + WS L+S
Sbjct: 480 ALIKNMAHDPDFLIWSTLLS 499


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/773 (31%), Positives = 412/773 (53%), Gaps = 74/773 (9%)

Query: 69  IKFSTDLLPFIEMSY---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           +  +  L  ++E  Y   +  +F  +   + FI+N M+R ++   +   A+  Y  M   
Sbjct: 61  VSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFG 120

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
            V  DN+TYP + +A      + EG+ +H  V+K+G D D+Y+ N+LI MYA  G + +A
Sbjct: 121 GVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESA 180

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADN--------------------------------- 212
             +F E PV DLVSWNS+++GYV+  +                                 
Sbjct: 181 EMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLE 240

Query: 213 --VEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
             +   K I+ +M     E +++   S++ ++ + G +  A RLF ++  K +V+W+A+I
Sbjct: 241 GFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMI 300

Query: 267 SCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
             Y  N    E+      M +  ++  D + ++++L  CA L  +  G SVH  A++ G 
Sbjct: 301 GGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGF 360

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
             ++ L+ AL+ MY  CG++                               + A  LF  
Sbjct: 361 LPHLVLETALVDMYGECGKL-------------------------------KPAECLFGQ 389

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M E++++SW+ MI+ Y ++ +  + ++LF ++ +  ++PD  T+ S++ A   L +L + 
Sbjct: 390 MNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREA 449

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + IH Y+ K  L  N+ +  +++ MY K G +  A E+F     K V SWN +I+ +A++
Sbjct: 450 EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIH 509

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G    S+E+FSEM++ G  PN  TFV +L +C   GLV+EG  +FNSM +++ + P  +H
Sbjct: 510 GFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEH 569

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           YGC++DL+GR G L  A+  IE MP++P    WG+LL A +  GD E+ E     ++ L+
Sbjct: 570 YGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLE 629

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
            D+ G +VLLSN++A  GRW+DV  ++  M + G+ K  GCS+++ +     F+  DR+ 
Sbjct: 630 HDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSD 689

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
            +IN + ++LD ++KK+  + Y     +      ++++  +   HS +LAI FGLI+ + 
Sbjct: 690 NEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTI 749

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            NP+ + KN+RIC  CH  AK IS    REI+VRD   FHHF  G CSC D+W
Sbjct: 750 GNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 195/406 (48%), Gaps = 36/406 (8%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           ERN ++    +  +  +G +  A  LF+ M + D   W+ +I  +  N ++ +A+  +  
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    V  D      V+ AC  L  +  G  VH   +K G++  I + N+LI MY+  G 
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           I +AE +F      DL+SWNSMISGY+  G                   W          
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGD-----------------GW---------- 209

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
                +LS F EMQ  GI+ D  +++ ++ AC+    L  GK IH  + ++ L+++ ++ 
Sbjct: 210 ----RSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQ 265

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-V 523
           T+L+DMY K G +D A  +F    +K + +WNA+I G+++N  + +S     +M++ G +
Sbjct: 266 TSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKL 325

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+ IT + +L  C  +  +  G       I+   L P+      +VD+ G  G LK AE
Sbjct: 326 HPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL-PHLVLETALVDMYGECGKLKPAE 384

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPD 627
            L   M    ++ +W A++ +  K+G++     + + L    L+PD
Sbjct: 385 CLFGQMN-ERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPD 429


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/671 (35%), Positives = 379/671 (56%), Gaps = 45/671 (6%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----- 226
           LI +    GD + AR+LFD  P  D  + +++++         EA  IY+ + ER     
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 227 ----------------------------------NIIASNSMIVLFGRKGNVAEACRLFK 252
                                             ++   N++I  +G+   V  A R+F 
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           ++  +D+VSW++L SCY +     + + +F  M    V  + + V S+L ACA L  +K+
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H  AV+ G+   + + +AL+ +Y+ C  +  A  +FD   + D++SWN +++ Y K
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 373 CGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
               EK  +LF  M    +  D  +W+ +I G  ++ +  E + +F +MQ  G +P+E T
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 317

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT-LIDMYMKLGCVDNALEVFHGT 487
           + S++ AC+    L  GK IH Y+ ++  K+  +  TT L+ MY K G ++ +  VF   
Sbjct: 318 ISSILPACSFSENLRMGKEIHCYVFRH-WKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 376

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             K V +WN +II  AM+G   ++L +F +M  S V PN +TF GVL  C H  LV+EG 
Sbjct: 377 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 436

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           + FNSM ++H +EP++ HY C+VD+  RAG L EA + I+ MPM P  + WGALL AC+ 
Sbjct: 437 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           + + E+ +   +KL E++P++ G +V L NI  +   W +  +VR +M  RG+ K PGCS
Sbjct: 497 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 556

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            ++    +H F+ GD+++ + ++I N LDE+ +K+K+ GY PDT  V  DIDQEEK  +L
Sbjct: 557 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESL 616

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSEKLA+AFG++ ++  + IR+ KNLRIC DCH A K++S+     IVVRD  RFHHF
Sbjct: 617 CNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHF 676

Query: 788 KHGSCSCMDFW 798
           K+G+CSC D W
Sbjct: 677 KNGNCSCKDLW 687



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 212/509 (41%), Gaps = 110/509 (21%)

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
           RLI+ + ++  F   + + ++F  +  P+    +T++ A     +  +AI +Y  +    
Sbjct: 17  RLIRVALNVGDF---NRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           +  D   +   A+A A+       K +HD   + G  SDV+V N LI+ Y  C  +  AR
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER-------------- 226
           ++FD+  V D+VSW S+ + YV      +   ++ +M      P                
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 227 -------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                              N+   ++++ L+ +  +V EA  +F  MP +D+VSW+ +++
Sbjct: 194 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 253

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVD---------------------------------- 293
            Y +N+ YE+   LF+ M    V  D                                  
Sbjct: 254 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 313

Query: 294 -EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            E+ + S+L AC+    ++ G  +H    +      +    AL++MY+ CG++  +  +F
Sbjct: 314 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 373

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     D+++WN+MI              + +AM                 H    E L 
Sbjct: 374 DMMRRKDVVAWNTMI--------------IANAM-----------------HGNGKEALF 402

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL-KINSILGTTLIDMY 471
           LF +M    ++P+  T   V+S C+H   +++G  I   + ++ L + ++   + ++D+Y
Sbjct: 403 LFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIY 462

Query: 472 MKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            + G ++ A +   G   E   S+W AL+
Sbjct: 463 SRAGRLNEAYKFIQGMPMEPTASAWGALL 491



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 33/219 (15%)

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           I S LG  LI + + +G  + A ++F    +   ++ + LI     +GL++++++++S +
Sbjct: 10  IPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL 69

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL----- 573
           ++ G+ P+   F+    AC   G            ++   +  ++   G M D+      
Sbjct: 70  QERGIKPDMPVFLAAAKACAVSG----------DALRVKEVHDDATRCGVMSDVFVGNAL 119

Query: 574 ----GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL----VELQ 625
               G+   ++ A  + + + +  DV +W +L     K G    G  V R++    V+  
Sbjct: 120 IHAYGKCKCVEGARRVFDDLVVR-DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 178

Query: 626 PDHDGFHVLLSNIHASKGRWDDV---LEVRGMMVRRGVV 661
           P      + +S+I  +     D+    E+ G  VR G+V
Sbjct: 179 P------MTVSSILPACAELKDLKSGKEIHGFAVRHGMV 211


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 351/552 (63%), Gaps = 1/552 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F+     ++  ++ALI  +  +  Y +A+ L+  M+   ++ D  ++ S+L AC +
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGS 159

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              ++ G  VH+ A+K+G+     ++  ++ +Y  CGE+  A ++F+     D+++   M
Sbjct: 160 QLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVM 218

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           IS Y   G VE+A A+F  +  KD V W+ MI G+ ++++ +  L  F  MQ   +RP+E
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNE 278

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T+V V+SAC+ L AL+ G+W+H+Y+RK  +++N  +G  LI+MY + G +D A  VF  
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            +++ V ++N +I G +MNG + +++E+F  M    + P  +TFVGVL AC H GLVD G
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            + F+SM +++ +EP  +HYGCMVDLLGR G L+EA +LI +M M+PD    G LL ACK
Sbjct: 399 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+GE+V + L +      G +VLLS+++AS G+W +  +VR  M   G+ K PGC
Sbjct: 459 MHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGC 518

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE N  IHEFL GD  HP+   I   L+E+ + L+LEGY P+   V  DI+  EKE  
Sbjct: 519 SSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWA 578

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSE+LAI +GLI+  P   IR+MKNLR+C DCH+A K I++   R++VVRDR+RFH+
Sbjct: 579 LAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHY 638

Query: 787 FKHGSCSCMDFW 798
           F++G+CSC D+W
Sbjct: 639 FENGACSCGDYW 650



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 224/486 (46%), Gaps = 69/486 (14%)

Query: 1   MTLATKLAHLSSTIKS--SVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL 58
           MT A  L     + K   + N+ P    +++   + + LQ+ +   Q   I +Q+I  G 
Sbjct: 18  MTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGH 77

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
             D F    L++  +       + Y+ +IF +  +PN +++  ++  ++       AI L
Sbjct: 78  SQDPFMVFELLRSCSKCHA---IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQL 134

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           Y  ML++++  DNY    + +A   +L++ EG+ +H   LK G  S+  V   ++ +Y  
Sbjct: 135 YSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGK 194

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238
           CG+L  AR++F+E                               MPE +++AS  MI  +
Sbjct: 195 CGELGDARRVFEE-------------------------------MPE-DVVASTVMISSY 222

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
             +G V EA  +F  + +KD V W+A+I  + +NE    AL  F  M    V  +E  +V
Sbjct: 223 SDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 282

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
            VLSAC+ L  ++ G  VH+   K  IE  + + NALI+MYS CG I  A+ +FD   + 
Sbjct: 283 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D+I++N+MISG    G   +A  LF  MI +                             
Sbjct: 343 DVITYNTMISGLSMNGKSRQAIELFRVMIGRR---------------------------- 374

Query: 419 HHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              +RP   T V V++AC+H   +D G K  H+  R  G++        ++D+  ++G +
Sbjct: 375 ---LRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRL 431

Query: 478 DNALEV 483
           + A ++
Sbjct: 432 EEAYDL 437



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D+  ++S++    H+   +Q   IHA + +NG   +  +   L+    K   +D A  +F
Sbjct: 48  DQKQIISLLQRSKHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 104

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
             T    V  + ALI GF  +G    +++++S M    + P+      +L AC     + 
Sbjct: 105 QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 164

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           EG R  +S   +  L  N      +++L G+ G L +A  + E MP
Sbjct: 165 EG-REVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/752 (32%), Positives = 398/752 (52%), Gaps = 70/752 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   +   +N+M+ AY       +A  +++ M       D  T+  +  A     
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK + + + +  F+ D++V   LI MYA C     A ++F      +L++W++I+ 
Sbjct: 276 TLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIIT 335

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
            + +  +  EA   +  M +  I+ +                                  
Sbjct: 336 AFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDD 395

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N+++ ++GR  +  +A  +F ++   +L+SW+++I  Y Q E +++AL LF  M 
Sbjct: 396 TTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQ 455

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D V  +++L AC   +  +    VH    + G+     +Q +L++MY+  GE+ 
Sbjct: 456 QQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGEL- 514

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                         + A  +   M E+ + +W+ +I+GYA H +
Sbjct: 515 ------------------------------DVAEVILQEMDEQQITAWNVLINGYALHGR 544

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L  + ++Q   I  D+ T +SV++ACT   +L +GK IH+   + GL  + I+   
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L +MY K G ++NA  +F     +   SWN ++  +A +G +++ L++  +M++ GV  N
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLN 664

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITFV VL +C H GL+ EG ++F+S+  +  +E  ++HYGC+VDLLGRAG L+EAE+ I
Sbjct: 665 GITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYI 724

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP+ P + TW +LLGAC+   D + G+    KL+EL P +    V+LSNI++ +G W 
Sbjct: 725 SKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWK 784

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +  ++R  M  R V K+PG S I+    +HEF   D +HP+  EI + ++E+   ++  G
Sbjct: 785 NAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAG 844

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  D+D+E+KE+ L  HSEKLAIAFGLI+    + + I KNLR+C DCHTA K
Sbjct: 845 YVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATK 904

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           FIS+   REIVVRD HRFHHF+ GSCSC D+W
Sbjct: 905 FISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/628 (24%), Positives = 292/628 (46%), Gaps = 79/628 (12%)

Query: 37  LQKCQSFKQFTQILSQMILT---GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L  C SF++    +    L+   G   +T  A+ L+         ++      +F  +  
Sbjct: 65  LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQ---SVFEEMAE 121

Query: 94  PNGFIFNTMMRAY-IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
            N   +N M+  Y +Q    + A+ L+  ML   V  +  T+  +  +     ++ +GK 
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKF 181

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  V ++    DV+VN  L+N Y  CG L+ ARK+FD  P   + +WNS+++ Y  ++ 
Sbjct: 182 IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 241

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
             EA FI+ +M                                        E ++    +
Sbjct: 242 SGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTA 301

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ R  +  +A ++F  M + +L++WSA+I+ +  +    EAL  F  M    ++ +
Sbjct: 302 LITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPN 361

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V  +S+L+     + ++  + +H L  + G++    ++NAL+++Y  C     A  +FD
Sbjct: 362 RVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFD 421

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                +LISWNSMI  Y++C                             +HD   + L L
Sbjct: 422 QLELPNLISWNSMIGIYVQC----------------------------ERHD---DALQL 450

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  MQ  GI+PD    ++++ ACT        K +H  + ++GL  + ++ T+L++MY K
Sbjct: 451 FRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAK 510

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +D A  +    +E+ +++WN LI G+A++G + ++LE + +++   +  +++TF+ V
Sbjct: 511 AGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISV 570

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC     + EG +  +S   E  L+ +      + ++  + G ++ A  + +SMP+  
Sbjct: 571 LNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS 629

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKL 621
            V +W  +L A  +HG+ E   ++ RK+
Sbjct: 630 AV-SWNGMLQAYAQHGESEEVLKLIRKM 656



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 244/562 (43%), Gaps = 73/562 (12%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  + + N   +N M+ AY      Q+A+ L+  ML   V  +  T   +  +      +
Sbjct: 15  FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFREL 74

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
            +G L+H   L+ GF  +  V   L+NMY  CG L  A+ +F+E    ++V+WN++L  Y
Sbjct: 75  RDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVY 134

Query: 208 ------------------------------------VNADNVEEAKFIYNKMPER----N 227
                                               V+ D + + KFI++ + E     +
Sbjct: 135 SLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLD 194

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +  + +++  + + G++ +A ++F  MP + + +W+++IS Y  +E   EA  +F  M  
Sbjct: 195 VFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQ 254

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
                D V  +S+L AC N   ++ G  V     +   E  + +  ALI MY+ C     
Sbjct: 255 EGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPED 314

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++F      +LI+W                               S +I+ +A H   
Sbjct: 315 AAQVFGRMKQTNLITW-------------------------------SAIITAFADHGHC 343

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L  F  MQ  GI P+  T +S+++  T    L++   IH  I ++GL   + +   L
Sbjct: 344 GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNAL 403

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +++Y +    D+A  VF   E   + SWN++I  +      D +L++F  M++ G+ P+ 
Sbjct: 404 VNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDR 463

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           + F+ +LGAC  +G      +  +  ++E  L  +      +V++  +AG L  AE +++
Sbjct: 464 VNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQ 522

Query: 588 SMPMSPDVATWGALLGACKKHG 609
            M     +  W  L+     HG
Sbjct: 523 EMD-EQQITAWNVLINGYALHG 543



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/505 (24%), Positives = 241/505 (47%), Gaps = 79/505 (15%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE--- 225
           MY+ CG L  A   F +    ++VSWN +++ Y +  + +EA  +++ M      P    
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 226 ------------------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                         +N + + +++ ++G+ G + +A  +F+EM 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 256 KKDLVSWSALISCYE-QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           +K++V+W+A++  Y  Q   ++ A+ LF  M+   V  + +  ++VL++  +   ++ G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +H                       SC        + ++ H+LD+    ++++ Y KCG
Sbjct: 181 FIH-----------------------SC--------VRESEHSLDVFVNTALVNTYTKCG 209

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S+  AR +FD M  + V +W++MIS Y+  ++  E   +F  MQ  G R D  T +S++ 
Sbjct: 210 SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILD 269

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC +   L  GK +   I +   +++  +GT LI MY +    ++A +VF   ++  + +
Sbjct: 270 ACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLIT 329

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRHFNSM 553
           W+A+I  FA +G   ++L  F  M++ G+ PN +TF+ +L G     GL +    H   +
Sbjct: 330 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--L 387

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG---ACKKHGD 610
           I EH L+  +     +V++ GR     +A  + + + + P++ +W +++G    C++H D
Sbjct: 388 ITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDD 446

Query: 611 HEMGERVGRKLVELQPDHDGFHVLL 635
                R  ++   +QPD   F  +L
Sbjct: 447 ALQLFRTMQQQ-GIQPDRVNFMTIL 470



 Score = 43.1 bits (100), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 111/272 (40%), Gaps = 10/272 (3%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI 69
           L +  K  + A P+ K T  +S+L        S  +   I S  +  GL +D    + L 
Sbjct: 549 LEAYQKLQLEAIPVDKVTF-ISVLNA-CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALT 606

Query: 70  KFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129
              +       M  + +IF  +   +   +N M++AY Q    ++ + L + M    V +
Sbjct: 607 NMYSKCGS---MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKL 663

Query: 130 DNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +  T+  +L+  S   L     +  H      G +        L+++    G L  A K 
Sbjct: 664 NGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKY 723

Query: 189 FDESPV-LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL---FGRKGNV 244
             + P+   +V+W S+L       +++  K    K+ E +   S++ +VL   +  +G+ 
Sbjct: 724 ISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDW 783

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
             A +L + M  + +     + S   +N+++E
Sbjct: 784 KNAAKLRRAMASRRVKKVPGISSIQVKNKVHE 815


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/559 (39%), Positives = 339/559 (60%), Gaps = 32/559 (5%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           + +++ A  LF+ M + D+V ++++   Y +     E   LF+ +++  ++ D     S+
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA    ++ G  +H L++K+G++  + +   LI+MY+ C +                
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED---------------- 179

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                          V+ AR +FD ++E  VV ++ MI+GYA+ ++ +E LSLF EMQ  
Sbjct: 180 ---------------VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK 224

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            ++P+E TL+SV+S+C  L +LD GKWIH Y +K+       + T LIDM+ K G +D+A
Sbjct: 225 YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           + +F     K   +W+A+I+ +A +G A+KS+ MF  M+   V P+EITF+G+L AC H 
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           G V+EG ++F+ M+ +  + P+ KHYG MVDLL RAG L++A E I+ +P+SP    W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL AC  H + ++ E+V  ++ EL   H G +V+LSN++A   +W+ V  +R +M  R  
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDID 719
           VK+PGCS IE N ++HEF +GD       ++   LDEM K+LKL GY PDT + V  +++
Sbjct: 465 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMN 524

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            +EKE TL  HSEKLAI FGL+   P   IR++KNLR+C DCH AAK IS  F R++V+R
Sbjct: 525 DQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHF+ G CSC DFW
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 173/357 (48%), Gaps = 41/357 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + KC S ++  QI +  I +  I D    ++LI F T+      MSY+  +F  +  P+ 
Sbjct: 36  ISKCNSLRELMQIQAYAIKSH-IEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDI 94

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            IFN+M R Y +   P +   L+  +L + +  DNYT+P L +A A+  ++ EG+ +H  
Sbjct: 95  VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G D +VYV  TLINMY  C D+ +AR +FD      +V +N+++ GY   +   EA
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214

Query: 217 KFIYNKMPER----------NIIAS-----------------------------NSMIVL 237
             ++ +M  +          ++++S                              ++I +
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           F + G++ +A  +F++M  KD  +WSA+I  Y  +   E+++++F  M    V  DE+  
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334

Query: 298 VSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           + +L+AC++   V+ G    +  V K GI   I    +++ + S  G +  A +  D
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFID 391


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/775 (33%), Positives = 406/775 (52%), Gaps = 78/775 (10%)

Query: 31  SILETHLQKCQSFK---QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           ++ +T LQ   S K   Q  Q+ +Q++ T L + +  ++ L  +S   L    +  S  I
Sbjct: 6   NLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNL----LHDSLLI 61

Query: 88  FAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           F  L SP     + +++R Y    +   ++  +  ML +    D+  +P + ++  L   
Sbjct: 62  FNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKD 121

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL---SAARKLFDESPVLDLVSWNSI 203
           +  G+ +H  +++ G   D+Y  N L+NMY+    L   +  +K+FDE    D+ S    
Sbjct: 122 LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS---- 177

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                             K  E   + S                 ++F+ MPK+D+VSW+
Sbjct: 178 -----------------KKEKESYYLGSLR---------------KVFEMMPKRDIVSWN 205

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +IS   QN M+E+AL++   M +  +  D   + SVL   A    +  G  +H  A++ 
Sbjct: 206 TVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN 265

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G +  + + ++LI MY+                               KC  V+ +  +F
Sbjct: 266 GYDADVFIGSSLIDMYA-------------------------------KCTRVDDSCRVF 294

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
             + + D +SW+++I+G  Q+  F E L  F +M    I+P+  +  S++ AC HL  L 
Sbjct: 295 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 354

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            GK +H YI ++    N  + + L+DMY K G +  A  +F   E   + SW A+I+G+A
Sbjct: 355 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA 414

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           ++G A  ++ +F  M+  GV PN + F+ VL AC H GLVDE  ++FNSM Q++R+ P  
Sbjct: 415 LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGL 474

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HY  + DLLGR G L+EA E I  M + P  + W  LL AC+ H + E+ E+V +KL  
Sbjct: 475 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 534

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           + P + G +VLLSNI+++ GRW D  ++R  M  +G+ K P CS IE    +H F+AGD+
Sbjct: 535 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 594

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP  + I+  L  + ++++ EGY  DT EV  D+++E+K   L  HSE+LAI FG+I+ 
Sbjct: 595 SHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIST 654

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                IR+ KNLR+C DCHTA KFIS+   REIVVRD  RFHHFK G CSC DFW
Sbjct: 655 PAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/426 (49%), Positives = 302/426 (70%), Gaps = 1/426 (0%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G  + A  LF  M  +DVVSW++M++ YAQ  + +E L+LF +M+  G++P EAT+VS++
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SAC HL ALD+G  +H YI  N +++NSI+GT L+DMY K G +  A +VF+  E K V 
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           +WN +I G A++G   ++  +F EMK++GV PN+ITFV +L AC H G+VDEG +  + M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
              + +EP  +HYGC++DLL RAG+L+EA ELI +MPM P+    GALLG C+ HG+ E+
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE VG++L+ LQP H G ++LLSNI+A+  +WDD  +VR +M   G+ K+PG S+IE  G
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE-GYAPDTLEVAFDIDQEEKETTLFRHSE 732
           ++H F+AGD +HP+ N+I   L+E+  +LK   G++ DT +V  D+++E+KE  L  HSE
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSE 521

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIA+GL+ +     IRI+KNLR+C DCH   K IS+ + REI+VRDR+RFHHF+ G C
Sbjct: 522 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGEC 581

Query: 793 SCMDFW 798
           SC+DFW
Sbjct: 582 SCLDFW 587



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 142/304 (46%), Gaps = 67/304 (22%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           FG++    +A  LF EMP +D+VSW+++++CY Q     EAL LF  M    V   E  V
Sbjct: 161 FGKRD---DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 217

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+LSACA+L  +  G  +H          YIN                      D    
Sbjct: 218 VSLLSACAHLGALDKGLHLHT---------YIN----------------------DNRIE 246

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           ++ I   +++  Y KCG +  A  +F+AM  KDV++W+T+I+G A H    E   LF EM
Sbjct: 247 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEM 306

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G+ P++ T V+++SAC+H   +D+G+ +                         L C+
Sbjct: 307 KEAGVEPNDITFVAMLSACSHAGMVDEGQKL-------------------------LDCM 341

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            ++    +G E K V  +  +I   A  GL ++++E+   M    + PN      +LG C
Sbjct: 342 SSS----YGIEPK-VEHYGCVIDLLARAGLLEEAMELIGTMP---MEPNPCALGALLGGC 393

Query: 538 RHMG 541
           R  G
Sbjct: 394 RIHG 397



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 13/219 (5%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F +   +F +F+ +   +   +N+M+  Y Q   P +A+ L+  M    V     T   L
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             A A   ++ +G  +H ++     + +  V   L++MYA CG +S A ++F+     D+
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKE 253
           ++WN+I+AG     +V+EA+ ++ +M E  +  ++    +M+      G V E  +L   
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 254 M-------PKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           M       PK +   +  +I    +  + EEA+ L   M
Sbjct: 341 MSSSYGIEPKVE--HYGCVIDLLARAGLLEEAMELIGTM 377



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 45/243 (18%)

Query: 155 DHVLKAGFDSDVYVNNTLINMYA-----VCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           D  L A F ++V V+  ++ ++        G    A  LF E P  D+VSWNS+LA Y  
Sbjct: 132 DEELVAEFCNEVGVDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQ 191

Query: 210 ADNVEEAKFIYNKMP---------------------------------------ERNIIA 230
                EA  ++++M                                        E N I 
Sbjct: 192 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 251

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
             +++ ++ + G ++ A ++F  M  KD+++W+ +I+    +   +EA  LF  M +  V
Sbjct: 252 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGV 311

Query: 291 MVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
             +++  V++LSAC++  +V  G   +  ++   GIE  +     +I + +  G +  A 
Sbjct: 312 EPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAM 371

Query: 350 KLF 352
           +L 
Sbjct: 372 ELI 374


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/588 (39%), Positives = 355/588 (60%), Gaps = 37/588 (6%)

Query: 216 AKFIYNKMPERNIIASNSMIVLF---GRKGNVAEACRLFKEMPKKDLVSWSALI-SCYEQ 271
           A+ + + MP  +I      I+ F      G++  A +LF ++ + ++ SW+++I  C + 
Sbjct: 9   ARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQS 68

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVS-VLSACANLTVVKAGTSVHALAVKIGIECYIN 330
               +E ++LF  M+           ++ VL AC+ ++ ++ G  VHA  +K G      
Sbjct: 69  QTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF 128

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           ++ AL++ Y+ C +I  A K+                               FD + +++
Sbjct: 129 VETALVNFYAKCEDIVLASKV-------------------------------FDEITDRN 157

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           +V+WSTMISGYA+    +E L LF +MQ  G+ PDE T+VSVISAC    ALD GKW+HA
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           YI K  ++ +  L T L++MY K GC++ A EVF     K   +W+++I+G A+NGLA+ 
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE F  M+++ V PN +TF+GVL AC H GLV EG R+++SM+ E  + P+ + YGCMV
Sbjct: 278 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMV 336

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLL RA ++++A  L+E+MP+SP+   W  LL  CKK  + +  E V ++L+EL+P +  
Sbjct: 337 DLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAE 396

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++LLSN++AS  +W+ + +VR  M   G+  +PGCS IE +G++HEF+ GD +HP+  E
Sbjct: 397 NYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAME 456

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           +  +L +++K++   G+ P   +V  ++  EEKE  L  HSE+LAIA+GL+    P  IR
Sbjct: 457 VREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIR 516

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+KNLR+C DCH   K IS  + REI+VRDR RFH F +GSCSC DFW
Sbjct: 517 IVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 194/407 (47%), Gaps = 46/407 (11%)

Query: 62  TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP-QQAICLYK 120
           +F   ++I F   L P+ ++ Y+ K+F+ ++ PN F +N+M+R   Q   P ++ + L++
Sbjct: 22  SFGLCKIIGFCA-LSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFR 80

Query: 121 LMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
            M+       N +T   + +A ++  ++ EG+ +H +VLK+GF S  +V   L+N YA C
Sbjct: 81  KMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC 140

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA----------------------- 216
            D+  A K+FDE    +LV+W+++++GY     V EA                       
Sbjct: 141 EDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVI 200

Query: 217 ----------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                            +I  ++ E ++  S +++ ++ + G +  A  +F  MP KD  
Sbjct: 201 SACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK 260

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +WS++I     N + E+AL  F  M + +V  + V  + VLSACA+  +V  G    +  
Sbjct: 261 AWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSM 320

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKA 379
           ++ GI   + L   ++ +      +  A  L +    + + + W +++ G  K  +++K+
Sbjct: 321 LEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKS 380

Query: 380 RALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
             +   ++E    +  ++  + + YA   Q+ +   +  +M+  GI+
Sbjct: 381 EVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIK 427


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/679 (37%), Positives = 372/679 (54%), Gaps = 75/679 (11%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA----------DNVE 214
           +V+  NTLIN YA    +  AR++FDE P  D+VS+N+++A Y +           + V 
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 215 EAKFIYNKMPERNIIAS---------------------------NSMIVLFGRKGNVAEA 247
           E +   +      +I +                           N+++  + RKG ++EA
Sbjct: 134 ELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEA 193

Query: 248 CRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            R+F+EM +   +D VSW+A+I    Q+    EA+ LF  M+   + VD   + SVL+A 
Sbjct: 194 RRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAF 253

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
             +  +  G   H + +K G     ++ + LI +YS C                      
Sbjct: 254 TCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCA--------------------- 292

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET-LSLFMEMQHHGIR 423
                    GS+ + R +F+ +   D+V W+TMISG++ ++  SE  L  F EMQ +G R
Sbjct: 293 ---------GSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFR 343

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALE 482
           PD+ + V V SAC++L +   GK +HA   K+ +  N + +   L+ MY K G V +A  
Sbjct: 344 PDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARR 403

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF    E    S N++I G+A +G+  +SL +F  M +  + PN ITF+ VL AC H G 
Sbjct: 404 VFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGK 463

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           V+EG ++FN M +   +EP ++HY CM+DLLGRAG LKEAE +IE+MP +P    W  LL
Sbjct: 464 VEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLL 523

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
           GAC+KHG+ E+  +   + + L+P +   +V+LSN++AS  RW++   V+ +M  RGV K
Sbjct: 524 GACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKK 583

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD---TLEVAFDID 719
            PGCS IE +  +H F+A D +HP I EI   + +M KK+K  GY PD    L    +++
Sbjct: 584 KPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVE 643

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            +E+E  L  HSEKLA+AFGLI+     PI ++KNLRIC DCH A K IS    REI VR
Sbjct: 644 PDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVR 703

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D HRFH FK G CSC D+W
Sbjct: 704 DTHRFHCFKEGHCSCRDYW 722



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/530 (24%), Positives = 239/530 (45%), Gaps = 90/530 (16%)

Query: 133 TYPL-------LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           TYPL       L +A   +  +  GK++H    K+      Y++N    +Y+ CG L  A
Sbjct: 4   TYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNA 63

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVA 245
           +  F  +   ++ S+N+++  Y                      A +S+I +        
Sbjct: 64  QTSFHLTQYPNVFSYNTLINAY----------------------AKHSLIHI-------- 93

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A R+F E+P+ D+VS++ LI+ Y         L LF  + + R+ +D   +  V++AC 
Sbjct: 94  -ARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACG 152

Query: 306 -NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF---DAGHNLDLI 361
            ++ +V+    +H   V  G +CY ++ NA++  YS  G ++ A ++F     G   D +
Sbjct: 153 DDVGLVR---QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEV 209

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           SWN+MI   + CG                            QH +  E + LF EM   G
Sbjct: 210 SWNAMI---VACG----------------------------QHREGMEAVGLFREMVRRG 238

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-GCVDNA 480
           ++ D  T+ SV++A T +  L  G+  H  + K+G   NS +G+ LID+Y K  G +   
Sbjct: 239 LKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVEC 298

Query: 481 LEVFHGTEEKGVSSWNALIIGFAM-NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
            +VF       +  WN +I GF++   L++  L  F EM+++G  P++ +FV V  AC +
Sbjct: 299 RKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358

Query: 540 MGLVDEGHR----HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           +     G +       S +  +R+  N+     +V +  + G + +A  + ++MP   + 
Sbjct: 359 LSSPSLGKQVHALAIKSDVPYNRVSVNNA----LVAMYSKCGNVHDARRVFDTMP-EHNT 413

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSN-IHASK 642
            +  +++    +HG      R+   ++E  + P+   F  +LS  +H  K
Sbjct: 414 VSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGK 463



 Score = 39.7 bits (91), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 18/191 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N    N+M+  Y Q  V  +++ L++LML  ++  ++ T+  +  A     
Sbjct: 403 RVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTG 462

Query: 146 SVFEGKLIHDHVLKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNS 202
            V EG+   + ++K  F  + +    + +I++    G L  A ++ +  P     + W +
Sbjct: 463 KVEEGQKYFN-MMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWAT 521

Query: 203 ILAGYVNADNVEEA-----KFI----YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           +L       NVE A     +F+    YN  P   ++ SN M     R    A   RL +E
Sbjct: 522 LLGACRKHGNVELAVKAANEFLRLEPYNAAP--YVMLSN-MYASAARWEEAATVKRLMRE 578

Query: 254 --MPKKDLVSW 262
             + KK   SW
Sbjct: 579 RGVKKKPGCSW 589


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/759 (34%), Positives = 404/759 (53%), Gaps = 72/759 (9%)

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L+ F E  +++K+FA +   + F +N M+  Y +    ++A+ LY  ML      D YT+
Sbjct: 139 LVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTF 198

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + ++      +  G+ +H HVL+ G   +V V N L+ MYA CGD+ AARK+FD   +
Sbjct: 199 PCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSL 258

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI-----------IAS------------ 231
            D +SWN+++AG+      E    ++  M E  +           +AS            
Sbjct: 259 TDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEI 318

Query: 232 ----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                           NS+I ++   G + EAC +F  M  +D +SW+A+IS YE+N   
Sbjct: 319 HALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFP 378

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           ++AL ++  M  + V  D+V V S L+ACA+L  +  G  +H LA   G   YI + NAL
Sbjct: 379 DKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANAL 438

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               K   +EKA  +F  M +KDV+SWS
Sbjct: 439 VEMYA-------------------------------KSKIIEKAIEVFKYMPDKDVISWS 467

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +MI+G+  + +  E L  F  M    ++P+  T ++ ++AC    +L  GK IHA++ + 
Sbjct: 468 SMIAGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQ 526

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+     +   L+D+Y+K G    A   F     K V SWN ++ GF  +G  D +L  F
Sbjct: 527 GIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFF 586

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           +EM ++G  P+E+TFV +L  C   G+V +G   F+SM +++ + PN KHY CMVDLL R
Sbjct: 587 NEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSR 646

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G L E    I  MP++PD A WGALL  C+ H + E+GE   + ++EL+P+  G+HVLL
Sbjct: 647 VGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLL 706

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           S+++A  G W +V +VR  M  +G+    GCS +E  G IH FL  D +HPQI EI+++L
Sbjct: 707 SDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVL 766

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           D + +++K  G+AP     + +  +  K+  L  HSE+LA+AFGLI  +P   I + KN 
Sbjct: 767 DGIYERMKASGFAP-VESYSLEDKEVSKDDVLCGHSERLAVAFGLINTTPGTSICVTKNQ 825

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
             C  CH   + IS+   REI VRD   FHHF+ GSCSC
Sbjct: 826 YTCESCHGILRMISKIVRREITVRDTKEFHHFRDGSCSC 864



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 193/405 (47%), Gaps = 48/405 (11%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+M+ +  R G    A ++F +MP++D+ SW+ ++  Y +    EEAL L+  M+    
Sbjct: 132 GNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGA 191

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             D      VL +C  +  +  G  VHA  ++ G+   +++ NAL+ MY+ CG++  A K
Sbjct: 192 RPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARK 251

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD     D ISWN+MI+G+ +    E    LF  M+E +V                   
Sbjct: 252 VFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEV------------------- 292

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
                        P+  T+ SV  A   L  LD  K IHA   K G   +     +LI M
Sbjct: 293 ------------EPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQM 340

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y  LG +  A  VF   E +   SW A+I G+  NG  DK+LE+++ M+ + V+P+++T 
Sbjct: 341 YSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTV 400

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-------GCMVDLLGRAGMLKEAE 583
              L AC  +G +D G       I+ H L   SK +         +V++  ++ ++++A 
Sbjct: 401 ASALAACASLGRLDVG-------IKLHELA-TSKGFIRYIVVANALVEMYAKSKIIEKAI 452

Query: 584 ELIESMPMSPDVATWGALL-GACKKHGDHEMGERVGRKLVELQPD 627
           E+ + MP   DV +W +++ G C  H + E        L +++P+
Sbjct: 453 EVFKYMP-DKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPN 496



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 137/513 (26%), Positives = 225/513 (43%), Gaps = 83/513 (16%)

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           + N +++M    G+   A K+F + P  D+ SWN ++ GY  A  +EEA  +Y++M    
Sbjct: 131 LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG 190

Query: 224 --PE--------------------RNIIAS-------------NSMIVLFGRKGNVAEAC 248
             P+                    R + A              N+++ ++ + G+V  A 
Sbjct: 191 ARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAAR 250

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++F  M   D +SW+A+I+ + +N   E  L LF++M++  V  + + + SV  A   L+
Sbjct: 251 KVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLS 310

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +     +HALAVK G    +   N+LI MYSS G +  A  +F      D +SW +MIS
Sbjct: 311 DLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMIS 370

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           GY K G  +KA                               L ++  M+ + + PD+ T
Sbjct: 371 GYEKNGFPDKA-------------------------------LEVYALMEVNNVSPDDVT 399

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           + S ++AC  L  LD G  +H      G     ++   L++MY K   ++ A+EVF    
Sbjct: 400 VASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMP 459

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG-- 546
           +K V SW+++I GF  N    ++L  F  M  + V PN +TF+  L AC   G +  G  
Sbjct: 460 DKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNSVTFIAALAACAATGSLRCGKE 518

Query: 547 -HRH-FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            H H     I      PN+     ++DL  + G    A     +   + DV +W  +L  
Sbjct: 519 IHAHVLRQGIASEGYVPNA-----LLDLYVKCGQTGYAWAQFGAHG-TKDVVSWNIMLAG 572

Query: 605 CKKHGDHEMGERVGRKLVEL--QPDHDGFHVLL 635
              HG  ++      +++E    PD   F  LL
Sbjct: 573 FVAHGHGDIALSFFNEMLETGEHPDEVTFVALL 605



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 125/278 (44%), Gaps = 8/278 (2%)

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           + A  H   +CG    A   F       L   N+M+S  ++ G    A  +F  M E+DV
Sbjct: 107 RRAAEHGLRACGHADAAHGTFG------LRLGNAMLSMLVRFGETWHAWKVFAKMPERDV 160

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
            SW+ M+ GY +     E L L+  M   G RPD  T   V+ +C  +  L  G+ +HA+
Sbjct: 161 FSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAH 220

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + + GL +   +   L+ MY K G V+ A +VF G       SWNA+I G   N   +  
Sbjct: 221 VLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAG 280

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           LE+F  M +  V PN +T   V  A   +  +D   +  +++  +     +      ++ 
Sbjct: 281 LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFA-KEIHALAVKRGFATDVAFCNSLIQ 339

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +    G + EA  +   M  + D  +W A++   +K+G
Sbjct: 340 MYSSLGRMGEACTVFSRME-TRDAMSWTAMISGYEKNG 376


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/691 (35%), Positives = 376/691 (54%), Gaps = 73/691 (10%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H   +K GF  DV V  +L++MY     +    ++FDE  V ++VSW S+LAGY  
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 210 ADNVEEAKFIYNKMP---------------------------------------ERNIIA 230
               E+A  ++++M                                        +  I  
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            NSM+ ++ +   V++A  +F  M  ++ VSW+++I+ +  N +  EA  LF  M    V
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            + + +  +V+  CAN+  +     +H   +K G +  +N++ AL+  YS          
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYS---------- 340

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSE 409
                                KC  ++ A  LF  M   ++VVSW+ +ISGY Q+ +   
Sbjct: 341 ---------------------KCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDR 379

Query: 410 TLSLFMEMQHH-GIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILGTTL 467
            ++LF +M+   G+ P+E T  SV++AC    A ++QGK  H+   K+G      + + L
Sbjct: 380 AMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSAL 439

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + MY K G +++A EVF    ++ + SWN++I G+A +G   KSL++F EM+   +  + 
Sbjct: 440 VTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDG 499

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           ITF+GV+ AC H GLV+EG R+F+ M++++ + P  +HY CMVDL  RAGML++A +LI 
Sbjct: 500 ITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLIN 559

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP       W  LL AC+ H + ++GE    KL+ LQP     +VLLSNI+A+ G W +
Sbjct: 560 KMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQE 619

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
             +VR +M  + V K  G S IE       F+AGD +HPQ + I   L+E++ +LK  GY
Sbjct: 620 RAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGY 679

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PDT  V  D+++E KE  L +HSE+LAIAFGLI   P  PI+I+KNLR+C DCHT  K 
Sbjct: 680 YPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKL 739

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+   R+IVVRD +RFHHFK GSCSC D+W
Sbjct: 740 ISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 208/468 (44%), Gaps = 77/468 (16%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE------------------- 225
           +++LFDE+P   L   N +L  +   D  +EA  ++  +                     
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 226 --------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                ++    S++ ++ +  +V +  R+F EM  K++VSW++L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ++ Y QN + E+AL LF  M    +  +     +VL   A    V+ G  VH + +K G+
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +  I + N++++MYS    ++ A+ +FD+  N + +SWNSMI+G++  G         D 
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG--------LDL 276

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                                  E   LF  M+  G++  +    +VI  C ++  +   
Sbjct: 277 -----------------------EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF---HGTEEKGVSSWNALIIGF 502
           K +H  + KNG   +  + T L+  Y K   +D+A ++F   HG +   V SW A+I G+
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN--VVSWTAIISGY 371

Query: 503 AMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
             NG  D+++ +F +M++  GV PNE TF  VL AC       E  + F+S   +     
Sbjct: 372 VQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 431

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
                  +V +  + G ++ A E+ +   +  D+ +W +++    +HG
Sbjct: 432 ALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHG 478



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 228/496 (45%), Gaps = 78/496 (15%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+  Q I  G + D    + L+      +    +    ++F  +   N   + +++  Y 
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDM---YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q  + +QA+ L+  M    +  + +T+  +    A   +V +G  +H  V+K+G DS ++
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEAKFIYNKMPE- 225
           V N+++NMY+    +S A+ +FD     + VSWNS++AG+V N  ++E  +  Y    E 
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 226 ----RNIIAS---------------------------------NSMIVLFGRKGNVAEAC 248
               + I A+                                  +++V + +   + +A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 249 RLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACAN 306
           +LF  M   +++VSW+A+IS Y QN   + A+ LF  M  +  V  +E    SVL+ACA 
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 307 LTV-VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            T  V+ G   H+ ++K G    + + +AL+ MY+  G I +A ++F    + DL+SWNS
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           MISGY                               AQH    ++L +F EM+   +  D
Sbjct: 470 MISGY-------------------------------AQHGCGKKSLKIFEEMRSKNLELD 498

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG-TTLIDMYMKLGCVDNALEVF 484
             T + VISACTH   +++G+     + K+   + ++   + ++D+Y + G ++ A+++ 
Sbjct: 499 GITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 558

Query: 485 HGTE-EKGVSSWNALI 499
           +      G + W  L+
Sbjct: 559 NKMPFPAGATIWRTLL 574



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 128/271 (47%), Gaps = 20/271 (7%)

Query: 31  SILETHLQKCQSFKQFT---QILSQMILTGLIAD-TFAASRLIKFSTDLLPFIEMSYSFK 86
           +I  T ++ C + K+ +   Q+  Q+I  G   D     + ++ +S       E+  +FK
Sbjct: 295 TIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYS----KCSEIDDAFK 350

Query: 87  IFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYP-LLAQASAL 143
           +F  +      + +  ++  Y+Q     +A+ L+ ++     V  + +T+  +L   +A 
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAP 410

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             SV +GK  H   +K+GF + + V++ L+ MYA  G++ +A ++F      DLVSWNS+
Sbjct: 411 TASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSM 470

Query: 204 LAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKK-- 257
           ++GY      +++  I+ +M  +N+    I    +I      G V E  R F  M K   
Sbjct: 471 ISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYH 530

Query: 258 ---DLVSWSALISCYEQNEMYEEALVLFMNM 285
               +  +S ++  Y +  M E+A+ L   M
Sbjct: 531 IVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 561


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 377/700 (53%), Gaps = 75/700 (10%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           Q+ A   ++ EG+ IH  + + G  SDVYV+N L+ MY  CG L  AR +F+ +P  ++ 
Sbjct: 42  QSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVF 101

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNI------------------------------ 228
           SW  ++         +EA  ++ +M ++ I                              
Sbjct: 102 SWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHAL 161

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                     +A+ S++ ++ + G++ E+ + F+ M + + VSW+A+I+ + ++    EA
Sbjct: 162 LRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEA 221

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L     M    +    V  ++++SA    + +K+   +H   ++ G +   ++ N +++M
Sbjct: 222 LRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFD--QDVVNVILNM 279

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y                                KCG ++ A A+F +M + DV++W+TMI
Sbjct: 280 YG-------------------------------KCGCLQDAEAMFKSMSQPDVIAWNTMI 308

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           + Y+QH   SE L  +  MQ  G+ PD+ T VSVI AC  L  ++ GK +H  +     +
Sbjct: 309 AAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQ 368

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           +   L  +L++MY K G +D A  +F  T  KG  +WNA+I  +A +    ++ E+F  M
Sbjct: 369 VTE-LANSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMIGAYAQHSHEQQAFELFLLM 426

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +  G  P+ ITF+ VL AC + GL +E H +F  M Q+H + P   HYGCMV+ LG+AG 
Sbjct: 427 RLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGR 486

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L +AE LI+ MP  PDV TW + L  C+ HGD + G+   +  + + P+    +V L+ I
Sbjct: 487 LSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARI 546

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           HA  G + +   +R +M+ RG+ K  G S+I+    ++EF AGD+++P+  EI + L  +
Sbjct: 547 HADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRL 606

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K++K  GY PD   VA D++  +KE  LF HSE+LAIAFG+I+ S   P+RIMKNLR+C
Sbjct: 607 DKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLRVC 666

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH   K  S+   REI+VRD +RFHHFK+GSCSC DFW
Sbjct: 667 GDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 148/328 (45%), Gaps = 36/328 (10%)

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           ++ +  R   D    V V+ +CA L  +  G  +H L  ++G+   + + N L+ MY  C
Sbjct: 23  IDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKC 82

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +  A  +F+A    ++ SW  +I+   + G  ++A                       
Sbjct: 83  GSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEA----------------------- 119

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINS 461
                   L+LF EM   GI+P   +  + I+AC+     L  G+ +HA +R+ G +   
Sbjct: 120 --------LALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAV 171

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           +  T+L+ MY K G ++ +++ F    E    SWNA+I  FA +    ++L    +M   
Sbjct: 172 VATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLE 231

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+    +T++ ++ A      +    R+ +  I     + +      ++++ G+ G L++
Sbjct: 232 GIRACSVTYITLMSAYDQPSQLKSA-RYIHDCILRTGFDQDV--VNVILNMYGKCGCLQD 288

Query: 582 AEELIESMPMSPDVATWGALLGACKKHG 609
           AE + +SM   PDV  W  ++ A  +HG
Sbjct: 289 AEAMFKSMS-QPDVIAWNTMIAAYSQHG 315



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 160/405 (39%), Gaps = 47/405 (11%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S K F  +   N   +N M+ A+ +     +A+   + M    +   + TY  L  A   
Sbjct: 190 SVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQ 249

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              +   + IHD +L+ GFD DV   N ++NMY  CG L  A  +F      D+++WN++
Sbjct: 250 PSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTM 307

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIA--------------------------------- 230
           +A Y    +  EA   Y  M E  ++                                  
Sbjct: 308 IAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAF 367

Query: 231 -----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                +NS++ ++G+ G +  A  +F +  K   V+W+A+I  Y Q+   ++A  LF+ M
Sbjct: 368 QVTELANSLVNMYGKCGILDVARSIFDKTAKGS-VTWNAMIGAYAQHSHEQQAFELFLLM 426

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCGE 344
                    +  +SVLSACAN  + +   S    +    G+         ++      G 
Sbjct: 427 RLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGR 486

Query: 345 ITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISG 400
           ++ AE L        D+++W S ++     G +++ +      I  D      +  +   
Sbjct: 487 LSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARI 546

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACTHLVALDQ 444
           +A    F E   +   M   GIR +   +++ + ++     A DQ
Sbjct: 547 HADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQ 591



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           ST++S   Q  Q +  +    + +      D    V VI +C  L AL +G+ IH  IR+
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRKD----ADLKECVRVIQSCARLGALAEGRRIHQLIRR 62

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            GL  +  +   L+ MY K G ++ A  VF  T  K V SW  LI   A +G + ++L +
Sbjct: 63  VGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALAL 122

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F EM K G+ P+ ++F   + AC          R  +++++ +  +        +V +  
Sbjct: 123 FYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYS 182

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           + G L+E+ +  ESM    +  +W A++ A  +H
Sbjct: 183 KCGSLEESVKTFESM-TELNAVSWNAMIAAFAEH 215


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/753 (34%), Positives = 407/753 (54%), Gaps = 74/753 (9%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASA 142
           ++ +F  +   N F +N ++  Y ++    +A+CLY  ML    V  D YT+P + +   
Sbjct: 148 AWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCG 207

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
               +  GK +H HV++ G++ D+ V N LI MY  CGD+ +AR LFD  P  D++SWN+
Sbjct: 208 GIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNA 267

Query: 203 ILAGYVNADNVEEAKFIYNKM------PE--------------------RNIIA------ 230
           +++GY       E   ++  M      P+                    R+I A      
Sbjct: 268 MISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327

Query: 231 -------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                   NS+  ++   G+  EA +LF  M +KD+VSW+ +IS YE N + ++A+  + 
Sbjct: 328 FAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYR 387

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V  DE+ V +VLSACA L  +  G  +H LA+K  +  Y+ + N LI+MYS   
Sbjct: 388 MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYS--- 444

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                                       KC  ++KA  +F  +  K+V+SW+++I+G   
Sbjct: 445 ----------------------------KCKCIDKALDIFHNIPRKNVISWTSIIAGLRL 476

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +++  E L +F+      ++P+  TL + ++AC  + AL  GK IHA++ + G+ ++  L
Sbjct: 477 NNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFL 535

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
              L+DMY++ G ++ A   F+ +++K V+SWN L+ G++  G     +E+F  M KS V
Sbjct: 536 PNALLDMYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRV 594

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+EITF+ +L  C    +V +G  +F+ M +++ + PN KHY C+VDLLGRAG L+EA 
Sbjct: 595 RPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           + I+ MP++PD A WGALL AC+ H   ++GE   + + EL     G+++LL N++A  G
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCG 713

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +W +V +VR MM   G+    GCS +E  G +H FL+ D+ HPQ  EI+ +L+   +K+ 
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMS 773

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             G    +   + D  +  ++     HSE+ AIAFGLI   P  PI + KNL +C +CH 
Sbjct: 774 EVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHD 833

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             KFIS+   REI VRD   FHHFK G CSC D
Sbjct: 834 TVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 163/595 (27%), Positives = 254/595 (42%), Gaps = 97/595 (16%)

Query: 113 QQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172
           ++A+ L   M    V VD   +  L +    + +  EG  ++   L +     V + N  
Sbjct: 76  EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAF 135

Query: 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--------- 223
           + M+   G+L  A  +F +    +L SWN ++ GY      +EA  +Y++M         
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 224 -------------------------------PERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E +I   N++I ++ + G+V  A  LF 
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            MP++D++SW+A+IS Y +N M  E L LF  M    V  D + + SV+SAC  L   + 
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +HA  +  G    I++ N+L  MY + G    AEKLF      D++SW +MISGY  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
               +KA                  I  Y   DQ S             ++PDE T+ +V
Sbjct: 376 NFLPDKA------------------IDTYRMMDQDS-------------VKPDEITVAAV 404

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +SAC  L  LD G  +H    K  L    I+   LI+MY K  C+D AL++FH    K V
Sbjct: 405 LSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNV 464

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV---DEGHRH 549
            SW ++I G  +N    ++L    +MK + + PN IT    L AC  +G +    E H H
Sbjct: 465 ISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAH 523

Query: 550 -FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
              + +      PN+     ++D+  R G +  A     S     DV +W  LL    + 
Sbjct: 524 VLRTGVGLDDFLPNA-----LLDMYVRCGRMNTAWSQFNS--QKKDVTSWNILLTGYSER 576

Query: 609 GDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
           G   M   +  ++V+  ++PD   F  LL     S+            MVR+G++
Sbjct: 577 GQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQ------------MVRQGLM 619



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 42/341 (12%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           I + +I TG   D    + L +   +   + E     K+F+ +E  +   + TM+  Y  
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLNAGSWREAE---KLFSRMERKDIVSWTTMISGYEY 375

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
             +P +AI  Y++M  ++V  D  T   +  A A    +  G  +H   +KA   S V V
Sbjct: 376 NFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
            N LINMY+ C  +  A  +F   P  +++SW SI+AG    +   EA     +M     
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQ 495

Query: 225 ---------------------ERNIIA-------------SNSMIVLFGRKGNVAEACRL 250
                                 + I A              N+++ ++ R G +  A   
Sbjct: 496 PNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQ 555

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F    KKD+ SW+ L++ Y +       + LF  M+  RV  DE+  +S+L  C+   +V
Sbjct: 556 FNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMV 614

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           + G    +     G+   +     ++ +    GE+  A K 
Sbjct: 615 RQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKF 655


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/662 (35%), Positives = 370/662 (55%), Gaps = 43/662 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS------ 233
           GD   A++LFD  P  D  + +++++ +       EA  +Y  +  R I   NS      
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 234 ---------------------------------MIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                            +I  +G+   V  A R+F ++  KD+V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++ SCY    +    L +F  M  + V  + V + S+L AC+ L  +K+G ++H  A
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFA 259

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           V+ G+   + + +AL+ +Y+ C  +  A  +FD   + D++SWN +++ Y      +K  
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGL 319

Query: 381 ALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           ALF  M    +E D  +W+ +I G  ++ Q  + + +  +MQ+ G +P++ T+ S + AC
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPAC 379

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           + L +L  GK +H Y+ ++ L  +    T L+ MY K G ++ +  VF     K V +WN
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWN 439

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
            +II  AM+G   + L +F  M +SG+ PN +TF GVL  C H  LV+EG + FNSM ++
Sbjct: 440 TMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRD 499

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           H +EP++ HY CMVD+  RAG L EA E I+ MPM P  + WGALLGAC+ + + E+ + 
Sbjct: 500 HLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKI 559

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              KL E++P++ G +V L NI  +   W +  E R +M  RG+ K PGCS ++    +H
Sbjct: 560 SANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVH 619

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
            F+ GD+ + + ++I N LDE+ +K+K  GY PDT  V  DIDQEEK  +L  HSEKLA+
Sbjct: 620 TFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAV 679

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AFG++ ++  + IR+ KNLRIC DCH A K++S+     I+VRD  RFHHF++G+CSC D
Sbjct: 680 AFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQD 739

Query: 797 FW 798
            W
Sbjct: 740 LW 741



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/490 (22%), Positives = 197/490 (40%), Gaps = 107/490 (21%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +  P+    +T++ A+  R +P +AI LY  +    +   N  +  +A+A     
Sbjct: 87  QLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASG 146

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
                K +HD  ++ G  SD ++ N LI+ Y  C  +  AR++FD+  V D+VSW S+ +
Sbjct: 147 DASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSS 206

Query: 206 GYVNADNVEEAKFIYNKM------PE---------------------------------R 226
            YVN         ++ +M      P                                   
Sbjct: 207 CYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE 266

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N+   ++++ L+ R  +V +A  +F  MP +D+VSW+ +++ Y  N  Y++ L LF  M 
Sbjct: 267 NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMS 326

Query: 287 DHRVMVDE-----------------------------------VVVVSVLSACANLTVVK 311
              V  DE                                   + + S L AC+ L  ++
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLR 386

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH    +  +   +    AL++MY+ CG++  +  +FD     D+++WN       
Sbjct: 387 MGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWN------- 439

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                   TMI   A H    E L LF  M   GI+P+  T   
Sbjct: 440 ------------------------TMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTG 475

Query: 432 VISACTHLVALDQGKWIHAYIRKNGL-KINSILGTTLIDMYMKLGCVDNALEVFHGTE-E 489
           V+S C+H   +++G  I   + ++ L + ++     ++D++ + G +  A E       E
Sbjct: 476 VLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPME 535

Query: 490 KGVSSWNALI 499
              S+W AL+
Sbjct: 536 PTASAWGALL 545



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++   L  G   +A+ LFD + + D  + ST+IS +      +E + L+  ++  GI+P 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
            +  ++V  AC       + K +H    + G+  ++ LG  LI  Y K  CV+ A  VF 
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K V SW ++   +   GL    L +F EM  +GV PN +T   +L AC  +  +  
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G R  +     H +  N      +V L  R   +K+A  + + MP   DV +W  +L A 
Sbjct: 252 G-RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR-DVVSWNGVLTAY 309

Query: 606 KKHGDHEMG 614
             + +++ G
Sbjct: 310 FTNREYDKG 318


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 366/672 (54%), Gaps = 69/672 (10%)

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           +D ++ N L+++YA  G+LS AR LFD+    D+ SWN++L+ Y  + NVE+ + ++++M
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
              + ++ N++I  F   G  ++A   F  M                Q E +E       
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRM----------------QEEGFEST----- 154

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
                     +   VSVL AC+ L  +K G  +H   V   +   + + NAL +MY+ CG
Sbjct: 155 ----------DYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCG 204

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYL-------------------------------- 371
            +  A  LFD   N +++SWNSMISGYL                                
Sbjct: 205 ALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILS 264

Query: 372 ---KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
              +CG +++A   F  + EKD V W+TM+ G AQ+ +  + L LF EM    +RPD  T
Sbjct: 265 AYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFT 324

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           + SV+S+C  L +L QG+ +H      G+  + ++ + L+DMY K G   +A  VF    
Sbjct: 325 ISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRML 384

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V SWN++I+G+A NG   ++L ++ EM    + P+ ITFVGVL AC H GLV+ G  
Sbjct: 385 TRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQG 444

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +F S+ + H + P   HY CM++LLGRAG + +A +LI+SM   P+   W  LL  C+ +
Sbjct: 445 YFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRIN 504

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            D   GE   R L EL P + G +++LSNI+A+ GRW DV  VR +M    + K    S 
Sbjct: 505 CDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSW 564

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE +  +H+F+A DRTH +  +I   L+ + KKL+  G+ PDT  V  D+ +EEK  ++ 
Sbjct: 565 IEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSIC 624

Query: 729 RHSEKLAIAFGLITISP--PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
            HSEKLA+AF LI   P    PIRIMKN+R+C DCH   KF+S+   R I++RD +RFHH
Sbjct: 625 YHSEKLALAFWLIK-KPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHH 683

Query: 787 FKHGSCSCMDFW 798
           F  G CSC D W
Sbjct: 684 FIEGRCSCKDSW 695



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 204/419 (48%), Gaps = 37/419 (8%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   +NT++  +       QA+  +  M        +YT+  +  A +  L 
Sbjct: 111 VFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLD 170

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK IH  ++       V+V N L NMYA CG L  AR LFD     ++VSWNS+++G
Sbjct: 171 IKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISG 230

Query: 207 YVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           Y+     E    ++ +M    ++      ++++  + + G + EAC+ F+E+ +KD V W
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCW 290

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + ++    QN   E+AL+LF  M+   V  D   + SV+S+CA L  +  G +VH  AV 
Sbjct: 291 TTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G++  + + +AL+ MYS CGE   A  +F      ++ISWNSMI GY            
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGY------------ 398

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                              AQ+ +  E L+L+ EM H  ++PD  T V V+SAC H   +
Sbjct: 399 -------------------AQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLV 439

Query: 443 DQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALI 499
           ++G+ + ++  + +G+       + +I++  + G +D A+++    T E     W+ L+
Sbjct: 440 ERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLL 498



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 10/209 (4%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY---SFKI 87
           S++  +LQ  Q  +  T++  +M  +GL+ D    S +      L  + +  Y   + K 
Sbjct: 226 SMISGYLQNGQP-ETCTKLFCEMQSSGLMPDQVTISNI------LSAYFQCGYIDEACKT 278

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  ++  +   + TMM    Q    + A+ L++ ML  NV  DN+T   +  + A   S+
Sbjct: 279 FREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASL 338

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
            +G+ +H   +  G D D+ V++ L++MY+ CG+ + A  +F      +++SWNS++ GY
Sbjct: 339 CQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGY 398

Query: 208 VNADNVEEAKFIYNKMPERNIIASNSMIV 236
                  EA  +Y +M   N+   N   V
Sbjct: 399 AQNGKDLEALALYEEMLHENLKPDNITFV 427


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/756 (34%), Positives = 408/756 (53%), Gaps = 81/756 (10%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  ++  N   + T++  Y + ++ ++ + L+  M +     +++T+       A    
Sbjct: 154 VFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGV 213

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G  +H  V+K G D  + V+N+LIN+Y  CG++  AR LFD++ V  +V+WNS+++G
Sbjct: 214 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 273

Query: 207 YVN--------------------------------ADNVEEAKFI---------YNKMPE 225
           Y                                    N++E +F          Y  + +
Sbjct: 274 YAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFD 333

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMN 284
           +NI    +++V + +   + +A RLFKE     ++VSW+A+IS + QN+  EEA+ LF  
Sbjct: 334 QNI--RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    V  +E     +L+A   L V+ + + VHA  VK                Y     
Sbjct: 392 MKRKGVRPNEFTYSVILTA---LPVI-SPSEVHAQVVKTN--------------YERSST 433

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           + TA  L DA               Y+K G V++A  +F  +  KD+V+WS M++GYAQ 
Sbjct: 434 VGTA--LLDA---------------YVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQA 476

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSIL 463
            +    + +F E+   G++P+E T  S+++ C    A + QGK  H +  K+ L  +  +
Sbjct: 477 GETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCV 536

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
            + L+ MY K G +++A EVF    EK + SWN++I G+A +G A K+L++F EMKK  V
Sbjct: 537 SSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 596

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             + +TF+GV  AC H GLV+EG ++F+ M+++ ++ P  +H  CMVDL  RAG L++A 
Sbjct: 597 KMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 656

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           ++I++MP       W  +L AC+ H   E+G     K++ + P+    +VLLSN++A  G
Sbjct: 657 KVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESG 716

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
            W +  +VR +M  R V K PG S IE     + FLAGDR+HP  ++I   L++++ +LK
Sbjct: 717 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLK 776

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY PDT  V  DID E KE  L +HSE+LAIAFGLI     +P+ I+KNLR+C DCH 
Sbjct: 777 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHV 836

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKH-GSCSCMDFW 798
             K I++  +REIVVRD +RFHHF   G CSC DFW
Sbjct: 837 VIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 257/551 (46%), Gaps = 76/551 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++  + +    Q+A  L+  + +  + +D   +  + + SA       G+ +H   +
Sbjct: 65  YTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 124

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K GF  DV V  +L++ Y    +    R +FDE    ++V+W ++++GY      EE   
Sbjct: 125 KFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLT 184

Query: 219 IYNKMP---------------------------------------ERNIIASNSMIVLFG 239
           ++ +M                                        ++ I  SNS+I L+ 
Sbjct: 185 LFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 244

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + GNV +A  LF +   K +V+W+++IS Y  N +  EAL +F +M  + V + E    S
Sbjct: 245 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFAS 304

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNL 358
           ++  CANL  ++    +H   VK G     N++ AL+  YS C  +  A +LF + G   
Sbjct: 305 IIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLG 364

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           +++SW +MISG+L                               Q+D   E + LF EM+
Sbjct: 365 NVVSWTAMISGFL-------------------------------QNDGKEEAVGLFSEMK 393

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G+RP+E T   +++A   +   +    +HA + K   + +S +GT L+D Y+KLG VD
Sbjct: 394 RKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVD 449

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A +VF G + K + +W+A++ G+A  G  + ++++FSE+ K GV PNE TF  +L  C 
Sbjct: 450 EAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
                    + F+    + RL+ +      ++ +  + G ++ AEE+ +      D+ +W
Sbjct: 510 ATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQ-REKDLVSW 568

Query: 599 GALLGACKKHG 609
            +++    +HG
Sbjct: 569 NSMISGYAQHG 579



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 31/291 (10%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF + P +D  S+++L+  + ++   +EA  LF+N+    + +D  +  SVL   A L  
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +H   +K G    +++  +L+  Y           +FD     ++++W ++I  
Sbjct: 113 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLI-- 170

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                        SGYA++    E L+LFM MQ  G +P+  T 
Sbjct: 171 -----------------------------SGYARNSLNEEVLTLFMRMQDEGTQPNSFTF 201

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            + +          +G  +H  + KNGL     +  +LI++Y+K G V  A  +F  TE 
Sbjct: 202 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 261

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           K V +WN++I G+A NGL  ++L MF  M+ + V  +E +F  ++  C ++
Sbjct: 262 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANL 312



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 2/231 (0%)

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A  LFD   ++D  S+++++ G+++  +  E   LF+ +QH G+  D +   SV+     
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L     G+ +H    K G   +  +GT+L+D YMK     +   VF   +E+ V +W  L
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+A N L ++ L +F  M+  G  PN  TF   LG     G+   G    ++++ ++ 
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG-LQVHTVVVKNG 228

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           L+        +++L  + G +++A  L +   +   V TW +++     +G
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISGYAANG 278



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 143/349 (40%), Gaps = 74/349 (21%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALR 144
           K+F+ +++ +   ++ M+  Y Q    + AI ++  +    V  + +T+  +L   +A  
Sbjct: 453 KVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATT 512

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S+ +GK  H   +K+  DS + V++ L+ MYA  G + +A ++F      DLVSWNS++
Sbjct: 513 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMI 572

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +GY                                + G   +A  +FKEM K+       
Sbjct: 573 SGY-------------------------------AQHGQAMKALDVFKEMKKR------- 594

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
                                   +V +D V  + V +AC +  +V+ G     + V+  
Sbjct: 595 ------------------------KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVR-- 628

Query: 325 IECYI----NLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKA 379
            +C I       + ++ +YS  G++  A K+ D   NL   + W ++++        E  
Sbjct: 629 -DCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELG 687

Query: 380 RALFD---AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           R   +   AMI +D  ++  + + YA+   + E   +   M    ++ +
Sbjct: 688 RLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKE 736


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/700 (36%), Positives = 386/700 (55%), Gaps = 86/700 (12%)

Query: 151 KLIHDHVLKAGFDSDV-YVNNTLINMYAVCGDLSAARKLFD----------ESPVLDLVS 199
           KLIH  +   GF     +    LI +Y+  GDL +AR LFD          ++P   L  
Sbjct: 42  KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLC- 100

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASN--------------------------- 232
            N++L  Y NA    EA  +Y  M    +  +N                           
Sbjct: 101 -NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 233 ------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                       +++ ++ + G + +A  +F  M  +D+V W+A+I+ YEQ E   +AL+
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF  M +   + DE+  +SV SA   L   +   SVH  AV  G    +++ N+++ MY+
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYA 279

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          KCG+VE+AR +FD M E++ +SW++M+SG
Sbjct: 280 -------------------------------KCGNVERARLVFDRMEERNGISWNSMLSG 308

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           Y Q+ + ++ LSLF +MQ     P+  T + ++SAC++L +   G+ +H ++  + + I+
Sbjct: 309 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDID 368

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           + L   ++DMYMK G +D A+E+F+  E  E+ VSSWN LI G+ ++G   ++LE+FS M
Sbjct: 369 TTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM 428

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +  GV PN+ITF  +L AC H GL+DEG + F  M +   + P  KHY CMVD+LGRAG 
Sbjct: 429 QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGF 487

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L EA  LI+ +P  P    WGALL AC+ HG+ E+GE     L +L+P+H G++VL+SNI
Sbjct: 488 LNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNI 547

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +A+  +W +V  VR  M  RG+ K    S+IE    +H F   D++ P   E+   ++ +
Sbjct: 548 YAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESL 607

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           A ++K+ GY PD   V  D++ E+KE  L  HSEKLA+AFG++ +    PI++ KNLR+C
Sbjct: 608 AIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVC 667

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +DCH A KFIS  + R+I+VRD +RFHHF+ G CSC D+W
Sbjct: 668 SDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +E  NG  +N+M+  Y Q   P  A+ L+  M  +    +  T  ++  A +   S
Sbjct: 290 VFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGS 349

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSIL 204
              G+ +H+ V+ +  D D  + N +++MY  CGDL  A ++F+   +   D+ SWN ++
Sbjct: 350 KHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLI 409

Query: 205 AGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           +GY    + +EA  ++++M     E N I   S++      G + E  + F +M K
Sbjct: 410 SGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK 465


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/798 (33%), Positives = 418/798 (52%), Gaps = 109/798 (13%)

Query: 53  MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN-- 110
           ++ TGL+ D F  + L+ F      F+  S + K+F  +   N   +N+M+R +      
Sbjct: 213 VVKTGLVEDLFVGNALVSF-YGTHGFV--SDALKLFDIMPERNLVSWNSMIRVFSDNGDD 269

Query: 111 ---VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
              +P  A  +  L             P+ A+   + +    GK +H   +K   D ++ 
Sbjct: 270 GAFMPDVATVVTVL-------------PVCAREREIGV----GKGVHGWAVKLSLDKELV 312

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------------------- 207
           VNN L++MY+  G +  ++ +F  +   ++VSWN+++ G+                    
Sbjct: 313 VNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGS 372

Query: 208 --VNADNVE-------------------------EAKFIYNKMPERNIIASNSMIVLFGR 240
             V AD V                          + +F+Y+++       +N+ +  + +
Sbjct: 373 EDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDEL------LANAFVASYAK 426

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G+++ A R+F  +  K L SW+ALI  Y Q+     +L   + M +  ++ D   V S+
Sbjct: 427 CGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSL 486

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           LSAC+ L  ++ G  VH   ++  +E                                DL
Sbjct: 487 LSACSKLKSLRLGKEVHGFIIRNWLE-------------------------------RDL 515

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
             + S++S Y+ CG +   + LFDAM +  +VSW+T+I+G+ Q+      L LF +M  +
Sbjct: 516 FVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLY 575

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           GI+P   ++++V  AC+ L +L  G+  HAY  K+ L+ N+ +  ++IDMY K G +  +
Sbjct: 576 GIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQS 635

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            +VF+G +EK  +SWNA+I+G+ M+G A +++++F EM+++G  P+++TF+GVL AC H 
Sbjct: 636 SKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHS 695

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GL+ EG R+ + M     L+PN KHY C++D+LGRAG L  A  +   M   PDV  W +
Sbjct: 696 GLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNS 755

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL  C+ H + EMGE+V  KL  L+P+    +VLLSN++A  G+WDDV +VR  M    +
Sbjct: 756 LLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSL 815

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K  GCS IE NG +  F+ G+R      EI ++   +  K+   GY PDT  V  D+ +
Sbjct: 816 RKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSE 875

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK   L  HSEKLAI +GLI  S    +R+ KNLRIC DCH AAK IS+  +REIVVRD
Sbjct: 876 EEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRD 935

Query: 781 RHRFHHFKHGSCSCMDFW 798
             RFHHF  G CSC D+W
Sbjct: 936 NKRFHHFNKGFCSCGDYW 953



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 261/554 (47%), Gaps = 67/554 (12%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLS 146
           F  L S N F +N ++ +Y +  +  + + ++ K++   ++  DN+T+P + +A A    
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISD 202

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V  G  +H  V+K G   D++V N L++ Y   G +S A KLFD  P  +LVSWNS++  
Sbjct: 203 VGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIR- 261

Query: 207 YVNADNVEEAKF------IYNKMP-----------------------ERNIIASNSMIVL 237
            V +DN ++  F      +   +P                       ++ ++ +N+++ +
Sbjct: 262 -VFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEV 295
           + + G + ++  +FK    K++VSW+ ++  +           L   M+     V  DEV
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEV 380

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +++ +  C + +V+ +   +H  ++K        L NA +  Y+ CG ++ A+++F   
Sbjct: 381 TILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGI 440

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
            +  L SWN+                               +I GYAQ      +L   +
Sbjct: 441 RSKTLNSWNA-------------------------------LIGGYAQSSDPRLSLDAHL 469

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M++ G+ PD  T+ S++SAC+ L +L  GK +H +I +N L+ +  +  +++ +Y+  G
Sbjct: 470 QMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 529

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +     +F   E+  + SWN +I G   NG  +++L +F +M   G+ P  I+ + V G
Sbjct: 530 ELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC  +  +  G R  ++   +H LE N+     ++D+  + G + ++ ++   +      
Sbjct: 590 ACSLLPSLRLG-REAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK-EKSA 647

Query: 596 ATWGALLGACKKHG 609
           A+W A++     HG
Sbjct: 648 ASWNAMIMGYGMHG 661



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/535 (24%), Positives = 230/535 (42%), Gaps = 88/535 (16%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAG--FDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           LL QAS  R  +  G+ IH H++       SD  +   +I MYA+CG    +R  FD   
Sbjct: 89  LLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALR 147

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--------------------------- 226
             +L  WN++++ Y   +   E   ++ KM  +                           
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 227 -------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                        ++   N+++  +G  G V++A +LF  MP+++LVSW+++I  +  N 
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
                        D   M D   VV+VL  CA    +  G  VH  AVK+ ++  + + N
Sbjct: 268 ------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNN 315

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MYS  G I  ++ +F   +N +++SWN+M+ G+   G +      FD + +     
Sbjct: 316 ALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIH---GTFDLLRQ----- 367

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
              M++G                     ++ DE T+++ +  C     L   K +H Y  
Sbjct: 368 ---MLAG------------------SEDVKADEVTILNAVPVCFDESVLPSLKELHCYSL 406

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K     + +L    +  Y K G +  A  VFHG   K ++SWNALI G+A +     SL+
Sbjct: 407 KQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLD 466

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
              +MK SG+ P+  T   +L AC  +  +  G +  +  I  + LE +   Y  ++ L 
Sbjct: 467 AHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLG-KEVHGFIIRNWLERDLFVYLSVLSLY 525

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQP 626
              G L   + L ++M     + +W  ++    ++G  E    + R++V   +QP
Sbjct: 526 IHCGELCTVQVLFDAME-DNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQP 579



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 174/393 (44%), Gaps = 59/393 (15%)

Query: 18  VNAKPI-FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL 76
           +NA P+ F  ++  S+ E H   C S KQ      + +   L+A+ F AS     S    
Sbjct: 383 LNAVPVCFDESVLPSLKELH---CYSLKQ------EFVYDELLANAFVASYAKCGS---- 429

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
               +SY+ ++F  + S     +N ++  Y Q + P+ ++  +  M N+ +  DN+T   
Sbjct: 430 ----LSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCS 485

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           L  A +   S+  GK +H  +++   + D++V  +++++Y  CG+L   + LFD      
Sbjct: 486 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNS 545

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMP-------------------------------- 224
           LVSWN+++ G++     E A  ++ +M                                 
Sbjct: 546 LVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHA 605

Query: 225 -------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                  E N   + S+I ++ + G + ++ ++F  + +K   SW+A+I  Y  +   +E
Sbjct: 606 YALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKE 665

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALI 336
           A+ LF  M       D++  + VL+AC +  ++  G   +  +    G++  +     +I
Sbjct: 666 AIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVI 725

Query: 337 HMYSSCGEITTAEKL-FDAGHNLDLISWNSMIS 368
            M    G++  A ++  +     D+  WNS++S
Sbjct: 726 DMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 360/610 (59%), Gaps = 37/610 (6%)

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM----PERNIIASNSMIVLFGRKGNVAEACRL 250
           ++   ++S+L   ++   + E + ++  M     E  +     +IVL+ +   + +A R+
Sbjct: 8   VEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRV 67

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
             EMP++++VSW+A+IS Y Q     EAL LF+ M+      +E    +VL++C + +  
Sbjct: 68  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 127

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           + G  +H+L +K   E +I + ++L+ MY+  G+I  A ++FD     D++S  ++ISGY
Sbjct: 128 QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 187

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            + G  E+A                               L LF  +Q  G+R +  T  
Sbjct: 188 AQLGLDEEA-------------------------------LDLFRRLQREGMRSNYVTYA 216

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           SV++A + L ALD G+ +H+++ +  L    +L  +LIDMY K G +  +  +F    E+
Sbjct: 217 SVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER 276

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRH 549
            V SWNA+++G++ +GL  +++E+F  MK+   V P+ +TF+ VL  C H G+ D G   
Sbjct: 277 TVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI 336

Query: 550 FNSMI-QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           F  M+ Q+   EP  +HYGC+VDL GRAG ++EA E I+ MP  P  A WG+LLGAC+ H
Sbjct: 337 FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            +  +GE V R+L+E++ ++ G +V+LSN++AS GRWDDV  VR +M  + V+K PG S 
Sbjct: 397 QNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSW 456

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           IE +  +H F A DR+HP+  E+   + E++ K+K  GY P+   V +D+D E+KE  L 
Sbjct: 457 IELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQ 516

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AFGLI      P+RI+KNLRIC DCH  AKF+SR + RE+ +RD++RFHH  
Sbjct: 517 GHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIV 576

Query: 789 HGSCSCMDFW 798
            G+CSC D+W
Sbjct: 577 GGTCSCGDYW 586



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 42/292 (14%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  M+  Y QR    +A+ L+  ML +    + +T+  +  +         G+ IH  V+
Sbjct: 79  WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVI 138

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K  F+S ++V ++L++MYA  G +  AR++FD  P  D+VS  +I++GY      EEA  
Sbjct: 139 KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALD 198

Query: 219 IYNKMPERN---------------------------------------IIASNSMIVLFG 239
           ++ ++                                           ++  NS+I ++ 
Sbjct: 199 LFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYS 258

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVV 298
           + G++  + R+F  MP++ ++SW+A++  Y ++ +  EA+ LF  M  +++V  D V  +
Sbjct: 259 KCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 318

Query: 299 SVLSACANLTVVKAGTSVHALAV--KIGIECYINLQNALIHMYSSCGEITTA 348
           +VLS C++  +   G  +    V  K G E  I     ++ ++   G +  A
Sbjct: 319 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 370



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 49/278 (17%)

Query: 35  THLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T L  C S   F+   QI S +I T   +  F  S L+          E     ++F  L
Sbjct: 116 TVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEAR---RVFDGL 172

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              +      ++  Y Q  + ++A+ L++ +    +  +  TY  +  A +   ++  G+
Sbjct: 173 PERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGR 232

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H HVL+A     V + N+LI+MY+ CG L+ +R++FD  P   ++SWN++L GY    
Sbjct: 233 QVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHG 292

Query: 212 NVEEAKFIYNKMPERNIIASNS-------------------------------------- 233
              EA  ++  M E N +  +S                                      
Sbjct: 293 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE 352

Query: 234 ----MIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
               ++ LFGR G V EA    K+MP +   + W +L+
Sbjct: 353 HYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 390


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/720 (35%), Positives = 375/720 (52%), Gaps = 101/720 (14%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            GK +H  +LK G   D++  N L+NMY     L  A KLFDE P  + +S+ +++ GY 
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 209 NADNVEEA---------------KFIYNKM------------------------PERNII 229
            +    EA                F++  +                         E N  
Sbjct: 116 ESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAF 175

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              ++I  +   G V  A  +F  +  KD+VSW+ +++C+ +N+ ++EAL LF  M    
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              +     SV  AC  L     G SVH  A+K                           
Sbjct: 236 FKPNNFTFASVFKACLGLEAFDVGKSVHGCALK--------------------------- 268

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
               + + LDL    +++  Y K G ++ AR  F+ + +KDV+ WS MI+ YAQ DQ  E
Sbjct: 269 ----SRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKE 324

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            + +F +M+   + P++ T  SV+ AC  +  L+ G  IH ++ K GL  +  +   L+D
Sbjct: 325 AVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD 384

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF----------SEMK 519
           +Y K G ++N++E+F  +  +   +WN +I+G    G  +K+L +F          +E+ 
Sbjct: 385 VYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVT 444

Query: 520 KSG---------------------VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
            S                      V P+++TFVGVL AC + GL+D+G  +F SMIQ+H 
Sbjct: 445 YSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHG 504

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +EP  +HY CMV LLGR G L +A +LI+ +P  P V  W ALLGAC  H D E+G    
Sbjct: 505 IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISA 564

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           ++++E++P     HVLLSN++A+  RWD+V  VR  M R+GV K PG S IE+ G +H F
Sbjct: 565 QRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSF 624

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
             GD +HP++  I+ ML+ +  K K  GY P+   V  D++ EEKE  L+ HSE+LA++F
Sbjct: 625 TVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSF 684

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           G+I     +PIRIMKNLRIC DCH A K IS+   REIVVRD +RFHHF+ G CSC D+W
Sbjct: 685 GIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/563 (40%), Positives = 331/563 (58%), Gaps = 32/563 (5%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G + +AC++F+EMP KD VSW+A+I  Y +   +EEAL+ F  MID  V +D+ V
Sbjct: 85  MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 144

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + S L AC  L   K G SVH+  VK+G E  I + NAL  MYS                
Sbjct: 145 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS---------------- 188

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFM 415
                          K G +E A  +F    E ++VVS++ +I GY + +Q  + LS+F+
Sbjct: 189 ---------------KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 233

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E++  GI P+E T  S+I AC +  AL+QG  +HA + K     +  + + L+DMY K G
Sbjct: 234 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 293

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            ++ A++ F    +    +WN+L+  F  +GL   ++++F  M   GV PN ITF+ +L 
Sbjct: 294 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 353

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C H GLV+EG  +F SM + + + P  +HY C++DLLGRAG LKEA+E I  MP  P+ 
Sbjct: 354 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 413

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             W + LGAC+ HGD EMG+    KLV+L+P + G  VLLSNI+A++ +W+DV  VR  M
Sbjct: 414 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 473

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
               V K+PG S ++     H F A D +HP+ + I   LD +  ++K  GY P T  V 
Sbjct: 474 RDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVP 533

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+D   KE  L RHSE++A+AF LI++    PI + KNLR+C DCH+A KFIS+   R+
Sbjct: 534 LDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRK 593

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I+VRD  RFHHF  GSCSC D+W
Sbjct: 594 IIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 194/387 (50%), Gaps = 36/387 (9%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MP+++LVSW+A+IS   QN  + EA+  F  M     +  +    S + ACA+L  ++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H LA+K GI   + + + L  MYS CG       +FDA                  C
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCG------AMFDA------------------C 96

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                   +F+ M  KD VSW+ MI GY++  +F E L  F +M    +  D+  L S +
Sbjct: 97  -------KVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 149

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH-GTEEKGV 492
            AC  L A   G+ +H+ + K G + +  +G  L DMY K G +++A  VF   +E + V
Sbjct: 150 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 209

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            S+  LI G+      +K L +F E+++ G+ PNE TF  ++ AC +   +++G    ++
Sbjct: 210 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQG-TQLHA 268

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            + +   + +      +VD+ G+ G+L++A +  + +    ++A W +L+    +HG  +
Sbjct: 269 QVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIA-WNSLVSVFGQHGLGK 327

Query: 613 MGERVGRKLVE--LQPDHDGFHVLLSN 637
              ++  ++V+  ++P+   F  LL+ 
Sbjct: 328 DAIKIFERMVDRGVKPNAITFISLLTG 354



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 45/348 (12%)

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
            + +    +A A   S+  GK +H   LK G  S+++V + L +MY+ CG +  A K+F+
Sbjct: 41  QFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFE 100

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP-------------------------- 224
           E P  D VSW +++ GY      EEA   + KM                           
Sbjct: 101 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 160

Query: 225 -------------ERNIIASNSMIVLFGRKGNVAEACRLFK-EMPKKDLVSWSALISCYE 270
                        E +I   N++  ++ + G++  A  +F  +   +++VS++ LI  Y 
Sbjct: 161 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 220

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           + E  E+ L +F+ +    +  +E    S++ ACAN   ++ GT +HA  +KI  +    
Sbjct: 221 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 280

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + + L+ MY  CG +  A + FD   +   I+WNS++S + + G  + A  +F+ M+++ 
Sbjct: 281 VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG 340

Query: 391 V----VSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVI 433
           V    +++ ++++G +      E L  F  M + +G+ P E     VI
Sbjct: 341 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVI 388



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 9/237 (3%)

Query: 27  TINLSILETHLQKCQSFK--QFTQ-ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           TI+  +L + L  C + K  +F + + S ++  G  +D F  + L    +        S 
Sbjct: 139 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 198

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
            F I +  E  N   +  ++  Y++    ++ + ++  +    +  + +T+  L +A A 
Sbjct: 199 VFGIDS--ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN 256

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           + ++ +G  +H  V+K  FD D +V++ L++MY  CG L  A + FDE      ++WNS+
Sbjct: 257 QAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSL 316

Query: 204 LAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           ++ +      ++A  I+ +M +R    N I   S++      G V E    F  M K
Sbjct: 317 VSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 373


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 351/582 (60%), Gaps = 36/582 (6%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
             Y+     N++AS ++     R G++  AC +F+++ +     ++ +I     +   EE
Sbjct: 59  LFYDSFCGSNLVASCAL----SRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEE 114

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL+L++ M++  +  D      VL AC+ L  +K G  +HA                   
Sbjct: 115 ALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHA------------------- 155

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
                        +F+AG  +D+   N +IS Y KCG++E A  +F+ M EK V SWS++
Sbjct: 156 ------------HVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSI 203

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I  +A  + + E L L  +M   G  R +E+ LVS +SACTHL + + G+ IH  + +N 
Sbjct: 204 IGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNI 263

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            ++N ++ T+LIDMY+K G ++  L VF     K   S+  +I G A++G   ++L +FS
Sbjct: 264 SELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFS 323

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M + G+TP+++ +VGVL AC H GLV EG + FN M  EH ++P  +HYGCMVDL+GRA
Sbjct: 324 DMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRA 383

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           GMLKEA +LI+SMP+ P+   W +LL ACK H + E+GE     + +L   + G +++L+
Sbjct: 384 GMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLA 443

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A   +W +V  +R  MV + +V+ PG S++EAN  +++F++ D++ PQ   I +M+ 
Sbjct: 444 NMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQ 503

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           +M  +LK EGY PD  +V  D+D++EK   L  HS+KLAIAF LI  S  +P+RI +NLR
Sbjct: 504 QMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLR 563

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +CNDCHT  KFIS  ++REI VRD +RFHHFK G+CSC D+W
Sbjct: 564 MCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 162/336 (48%), Gaps = 52/336 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C+S ++F ++ + ++  GL  D+F  S L+  S  L  +  M Y+  IF  +E P  
Sbjct: 38  LKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVA-SCALSRWGSMEYACSIFRQIEEPGS 96

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F +NTM+R  +     ++A+ LY  ML   +  DN+TYP + +A +L +++ EG  IH H
Sbjct: 97  FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAH 156

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V  AG + DV+V N LI+MY  CG +  A  +F++     + SW+SI+  + + +   E 
Sbjct: 157 VFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
             +   M                                         E N++   S+I 
Sbjct: 217 LMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G++ +   +F+ M  K+  S++ +I+    +    EAL +F +M++  +  D+VV
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVV 336

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            V VLSAC+           HA  VK G +C+  +Q
Sbjct: 337 YVGVLSACS-----------HAGLVKEGFQCFNRMQ 361



 Score = 40.8 bits (94), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 12/164 (7%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ IH  +L+   + +V V  +LI+MY  CG L     +F      +  S+  ++AG   
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMP-----KKDLV 260
                EA  +++ M E  +   + + V         G V E  + F  M      K  + 
Sbjct: 312 HGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQ 371

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            +  ++    +  M +EA  L  +M    +  ++VV  S+LSAC
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSM---PIKPNDVVWRSLLSAC 412


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 337/573 (58%), Gaps = 32/573 (5%)

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           ++++ +N ++  + +   + +A  LF  +  +D  +WS ++  + +   +      F  +
Sbjct: 33  QDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFREL 92

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +   V  D   +  V+  C + T ++ G  +H + +K G          L+  +  C   
Sbjct: 93  LRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHG----------LLSDHFVCA-- 140

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                              S++  Y KC  VE A+ LF+ M+ KD+V+W+ MI  YA  +
Sbjct: 141 -------------------SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN 181

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
            + E+L LF  M+  G+ PD+  +V+V++AC  L A+ + ++ + YI +NG  ++ ILGT
Sbjct: 182 AY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGT 240

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            +IDMY K G V++A EVF   +EK V SW+A+I  +  +G    ++++F  M    + P
Sbjct: 241 AMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILP 300

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N +TFV +L AC H GL++EG R FNSM +EH + P+ KHY CMVDLLGRAG L EA  L
Sbjct: 301 NRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRL 360

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           IE+M +  D   W ALLGAC+ H   E+ E+    L+ELQP + G +VLLSNI+A  G+W
Sbjct: 361 IEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKW 420

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           + V + R MM +R + KIPG + IE +   ++F  GDR+HPQ  EI  ML  + KKL++ 
Sbjct: 421 EKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMA 480

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  V  D+++E K+  L+ HSEKLAIAFGLI I    PIRI KNLR+C DCHT +
Sbjct: 481 GYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFS 540

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S    R I+VRD +RFHHF  G+CSC D+W
Sbjct: 541 KMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 195/454 (42%), Gaps = 86/454 (18%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L +C++     Q+ + ++  G + D   A++L+ ++      I+ +YS  +F  L   + 
Sbjct: 10  LLRCRNVFHIRQVHAHVVANGTLQDLVIANKLL-YTYAQHKAIDDAYS--LFDGLTMRDS 66

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             ++ M+  + +          ++ +L   V  DNYT P + +    R  +  G++IHD 
Sbjct: 67  KTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G  SD +V  +L++MYA C  +  A++LF+     DLV+W  ++  Y +  N  E+
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADC-NAYES 185

Query: 217 KFIYNKMPER---------------------------------------NIIASNSMIVL 237
             ++++M E                                        ++I   +MI +
Sbjct: 186 LVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDM 245

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G+V  A  +F  M +K+++SWSA+I+ Y  +   ++A+ LF  M+   ++ + V  
Sbjct: 246 YAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTF 305

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+L AC++  +++ G                      +  ++S  E             
Sbjct: 306 VSLLYACSHAGLIEEG----------------------LRFFNSMWEEHAVRP------- 336

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGYAQHDQF---SETLSL 413
            D+  +  M+    + G +++A  L +AM +EKD   WS ++     H +     +  + 
Sbjct: 337 -DVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANS 395

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
            +E+Q     P    L+S I A         GKW
Sbjct: 396 LLELQPQN--PGHYVLLSNIYA-------KAGKW 420



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + +HA++  NG   + ++   L+  Y +   +D+A  +F G   +   +W+ ++ GFA  
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G        F E+ + GVTP+  T   V+  CR    +  G R  + ++ +H L   S H
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG-RVIHDVVLKHGLL--SDH 136

Query: 566 YGC--MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           + C  +VD+  +  ++++A+ L E M +S D+ TW  ++GA
Sbjct: 137 FVCASLVDMYAKCIVVEDAQRLFERM-LSKDLVTWTVMIGA 176


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 360/610 (59%), Gaps = 37/610 (6%)

Query: 195  LDLVSWNSILAGYVNADNVEEAKFIYNKM----PERNIIASNSMIVLFGRKGNVAEACRL 250
            ++   ++S+L   ++   + E + ++  M     E  +     +IVL+ +   + +A R+
Sbjct: 475  VEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRV 534

Query: 251  FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
              EMP++++VSW+A+IS Y Q     EAL LF+ M+      +E    +VL++C + +  
Sbjct: 535  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 594

Query: 311  KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
            + G  +H+L +K   E +I + ++L+ MY+  G+I  A ++FD     D++S  ++ISGY
Sbjct: 595  QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 654

Query: 371  LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
             + G  E+A                               L LF  +Q  G+R +  T  
Sbjct: 655  AQLGLDEEA-------------------------------LDLFRRLQREGMRSNYVTYA 683

Query: 431  SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
            SV++A + L ALD G+ +H+++ +  L    +L  +LIDMY K G +  +  +F    E+
Sbjct: 684  SVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER 743

Query: 491  GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRH 549
             V SWNA+++G++ +GL  +++E+F  MK+   V P+ +TF+ VL  C H G+ D G   
Sbjct: 744  TVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI 803

Query: 550  FNSMI-QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            F  M+ Q+   EP  +HYGC+VDL GRAG ++EA E I+ MP  P  A WG+LLGAC+ H
Sbjct: 804  FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863

Query: 609  GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
             +  +GE V R+L+E++ ++ G +V+LSN++AS GRWDDV  VR +M  + V+K PG S 
Sbjct: 864  QNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSW 923

Query: 669  IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
            IE +  +H F A DR+HP+  E+   + E++ K+K  GY P+   V +D+D E+KE  L 
Sbjct: 924  IELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQ 983

Query: 729  RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
             HSEKLA+AFGLI      P+RI+KNLRIC DCH  AKF+SR + RE+ +RD++RFHH  
Sbjct: 984  GHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIV 1043

Query: 789  HGSCSCMDFW 798
             G+CSC D+W
Sbjct: 1044 GGTCSCGDYW 1053



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 42/292 (14%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  M+  Y QR    +A+ L+  ML +    + +T+  +  +         G+ IH  V+
Sbjct: 546 WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVI 605

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K  F+S ++V ++L++MYA  G +  AR++FD  P  D+VS  +I++GY      EEA  
Sbjct: 606 KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALD 665

Query: 219 IYNKMPERN---------------------------------------IIASNSMIVLFG 239
           ++ ++                                           ++  NS+I ++ 
Sbjct: 666 LFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYS 725

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVV 298
           + G++  + R+F  MP++ ++SW+A++  Y ++ +  EA+ LF  M  +++V  D V  +
Sbjct: 726 KCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 785

Query: 299 SVLSACANLTVVKAGTSVHALAV--KIGIECYINLQNALIHMYSSCGEITTA 348
           +VLS C++  +   G  +    V  K G E  I     ++ ++   G +  A
Sbjct: 786 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 837



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 5/216 (2%)

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           Q  E L   +EM   G+  +     SV++ C    A+ +G+ +HA++ K   +    L T
Sbjct: 460 QLKEAL---LEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRT 516

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LI +Y K  C+ +A  V     E+ V SW A+I G++  G A ++L +F EM  SG  P
Sbjct: 517 RLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAP 576

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE TF  VL +C        G R  +S++ +   E +      ++D+  +AG + EA  +
Sbjct: 577 NEFTFATVLTSCTSSSGFQLG-RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRV 635

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
            + +P   DV +  A++    + G  E    + R+L
Sbjct: 636 FDGLP-ERDVVSCTAIISGYAQLGLDEEALDLFRRL 670



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 49/278 (17%)

Query: 35  THLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T L  C S   F+   QI S +I T   +  F  S L+          E     ++F  L
Sbjct: 583 TVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEAR---RVFDGL 639

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              +      ++  Y Q  + ++A+ L++ +    +  +  TY  +  A +   ++  G+
Sbjct: 640 PERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGR 699

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H HVL+A     V + N+LI+MY+ CG L+ +R++FD  P   ++SWN++L GY    
Sbjct: 700 QVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHG 759

Query: 212 NVEEAKFIYNKMPERNIIASNS-------------------------------------- 233
              EA  ++  M E N +  +S                                      
Sbjct: 760 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIE 819

Query: 234 ----MIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
               ++ LFGR G V EA    K+MP +   + W +L+
Sbjct: 820 HYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 857


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/824 (31%), Positives = 437/824 (53%), Gaps = 79/824 (9%)

Query: 17  SVNAKPIFK--PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           SV+  P F   P++  S+L    Q   +      I +Q+I   +  ++F A++LI+  +D
Sbjct: 35  SVHHAPFFNQAPSVFSSLLH---QFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSD 91

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L  F  + ++  +F     P   + N M+  +++     +   L+++M + ++ +++YT 
Sbjct: 92  L-GF--LGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTC 148

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
               +A    L    G  I    ++ GF   +YV ++++N     G L+ A+K+FD  P 
Sbjct: 149 MFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPE 208

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM------PE----------------------- 225
            D+V WNSI+ GYV      E+  ++ +M      P                        
Sbjct: 209 KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCA 268

Query: 226 ----------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
                      ++    S++ ++   G+   A  +F  M  + L+SW+A+IS Y QN M 
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
            E+  LF  ++      D   +VS++  C+  + ++ G  +H+  ++  +E ++ L  A+
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAI 388

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MYS                               KCG++++A  +F  M +K+V++W+
Sbjct: 389 VDMYS-------------------------------KCGAIKQATIVFGRMGKKNVITWT 417

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            M+ G +Q+    + L LF +MQ   +  +  TLVS++  C HL +L +G+ +HA+  ++
Sbjct: 418 AMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRH 477

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEM 514
           G   ++++ + LIDMY K G + +A ++F+     K V   N++I+G+ M+G    +L +
Sbjct: 478 GYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGV 537

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           +S M +  + PN+ TFV +L AC H GLV+EG   F+SM ++H + P  KHY C+VDL  
Sbjct: 538 YSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHS 597

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG L+EA+EL++ MP  P      ALL  C+ H +  MG ++  +L+ L   + G +V+
Sbjct: 598 RAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVM 657

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A   +W+ V  +RG+M  +G+ KIPG S+IE    ++ F A D +HP   +I  +
Sbjct: 658 LSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQL 717

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L+ +  +++ EGY PDT  V  D+++  K   L+ HSE+LAIAFGL++    + I+I KN
Sbjct: 718 LENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKN 777

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C DCH   K+IS+   REI+VRD +RFHHF +G CSC DFW
Sbjct: 778 LRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/757 (32%), Positives = 408/757 (53%), Gaps = 75/757 (9%)

Query: 84  SFKIFAFLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           + ++F +L+     +  +N+++   +Q     +A+ L++ M +    +++YT   + Q  
Sbjct: 218 ALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVC 277

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           A    +  G+ +H  +LK G + ++  N  L+ MYA  G + +A ++F +    D +SWN
Sbjct: 278 AELGLLSLGRELHAALLKCGSELNIQCNALLV-MYAKYGRVDSALRVFGQIAEKDYISWN 336

Query: 202 SILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------------ 231
           S+L+ YV      EA   + +M      P+   + S                        
Sbjct: 337 SMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQ 396

Query: 232 ---------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                    N+++ ++ + G++  + ++F+ M  +D +SW+ +++C+ Q+  + EAL + 
Sbjct: 397 RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMI 456

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           + +    +MVD +++ S+L  C  L  +     VH  A++ G+                 
Sbjct: 457 LELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL----------------- 499

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                          LDLI  N +I  Y +CG  + +  LF  + +KD+VSW++MI+   
Sbjct: 500 ---------------LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCT 544

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
            + + +  + LF EMQ   I+PD   LVS++ A   L +L +GK +H ++ +    I   
Sbjct: 545 NNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGP 604

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + ++L+DMY   G ++ A+ VF   + K V  W A+I    M+G   +++++F  M ++G
Sbjct: 605 VVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTG 664

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           +TP+ ++F+ +L AC H  LV+EG  + + M+ ++RL+P  +HY C+VD+LGR+G  +EA
Sbjct: 665 LTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEA 724

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            E I++MPM P  A W ALLGAC+ H ++ +      KL+EL+PD+ G ++L+SN+ A  
Sbjct: 725 YEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEM 784

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G+W++  E R  M  RG+ K P CS IE    IH F +GD  H     I   L E+ + L
Sbjct: 785 GKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEML 844

Query: 703 KLE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           + E GY  DT  V  D  +EEK   L +HSE++AIAFGLI+  P  PIRI KNLR+C DC
Sbjct: 845 RREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDC 904

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H   K +S+ F+R+IVVRD +RFHHF  GSCSC DFW
Sbjct: 905 HEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 145/572 (25%), Positives = 259/572 (45%), Gaps = 111/572 (19%)

Query: 149 EGKLIHDHVLKAGF---DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           EG+ +H H +  G    D D ++   L+ MY  CG +  AR+LF+  P   + SWN+++ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 206 GYVNADNVEEAKFIYNKMP----------------------------------------- 224
            Y+++ +  EA  +Y  M                                          
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVL 281
            +++ + +N++I ++ + G +  A R+F+ + +  +D+ SW++++S   QN    EAL L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ-NALIHMYS 340
           F  M      ++    V+VL  CA L ++  G  +HA  +K G E  +N+Q NAL+ MY+
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE--LNIQCNALLVMYA 312

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          K G V+ A  +F  + EKD +SW++M+S 
Sbjct: 313 -------------------------------KYGRVDSALRVFGQIAEKDYISWNSMLSC 341

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           Y Q+  ++E +  F EM  HG +PD A +VS+ SA  HL  L+ G+  HAY  K  L  +
Sbjct: 342 YVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTD 401

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             +G TL+DMY+K G ++ + +VF     +   SW  ++  FA +    ++LEM  E++K
Sbjct: 402 LQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQK 461

Query: 521 SGVTPNEITFVGVLGAC---RHMGLVDEGHRH-----FNSMIQEHRLEPNSKHYGCMVDL 572
            G+  + +    +L  C   + + L+ + H +        +I E+RL          +D+
Sbjct: 462 EGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRL----------IDI 511

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDG 630
            G  G    +  L + +    D+ +W +++  C  +G       +  ++    +QPD   
Sbjct: 512 YGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVA 570

Query: 631 FHVLLSNIHA----SKGRWDDVLEVRGMMVRR 658
              +L  I      +KG+     +V G ++RR
Sbjct: 571 LVSILVAIAGLSSLTKGK-----QVHGFLIRR 597



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 31  SILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKI 87
           SILET    C   K  +   Q+    I  GL+ D    +RLI    +   F    +S  +
Sbjct: 473 SILET----CCGLKSISLLKQVHCYAIRNGLL-DLILENRLIDIYGECGEF---DHSLNL 524

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  +E  +   + +M+           A+ L+  M   N+  D+     +  A A   S+
Sbjct: 525 FQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSL 584

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +GK +H  +++  F  +  V ++L++MY+ CG ++ A ++F+ +   D+V W +++
Sbjct: 585 TKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMI 641


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 285/835 (34%), Positives = 438/835 (52%), Gaps = 107/835 (12%)

Query: 38  QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE---SP 94
           Q+C++  Q   +  Q I+ G + +++        +  +  +I  +        LE   +P
Sbjct: 32  QQCKTLTQAKLLHQQYIINGHLLNSYT-----NVTNLIYTYISSNSITNAILLLEKNVTP 86

Query: 95  NG---FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-G 150
           +    + +N ++R  +  N P  A+ L++ M   +   D+YT+P + +A    +S FE G
Sbjct: 87  SHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACG-EISNFELG 145

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE---SPVLDLVSWNSILAGY 207
             IH  V++ GF+S+V+V N +I+MY  C  +  ARK+FDE     + D V+WNSI++ Y
Sbjct: 146 ASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVY 205

Query: 208 -------VNADNVEEAKFIYNKMPE---------------------------------RN 227
                  V      E    Y  +P+                                  +
Sbjct: 206 SHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVED 265

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N+++ ++ + G + +A ++F+ M  KD+V+W+A+++ Y QN  +E+AL LF  M +
Sbjct: 266 VFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMRE 325

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV---KIGIECYINLQNALIHMYSSCGE 344
            ++  D V   SV+S  A     + G    A+ V     G  C  N+   L+ + S+C  
Sbjct: 326 EKIESDVVTWSSVISGYA-----QRGFGCEAMDVFRQMCGCRCRPNVVT-LMSLLSACAS 379

Query: 345 IT-----------TAEKLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFDAMI--E 388
           +            + + +    HN D   L   N++I  Y KC S+E ARA+FD +   +
Sbjct: 380 VGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKD 439

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVALDQGK 446
           +DVV+W+ MI GYAQH   +  L LF EM    + I P++ T+  V+ AC  L AL  GK
Sbjct: 440 RDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGK 499

Query: 447 WIHAYIRKNGLKINS---ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            IHAY+ +   +I+S    +   LIDMY K G VD A  VF    ++   SW +L+ G+ 
Sbjct: 500 QIHAYVLRRS-RIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYG 558

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           M+G ++ +  +F EM+K  +  + ITF+ VL AC H G+ D G            ++P  
Sbjct: 559 MHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-DFG------------VDPGV 605

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HY CMVDLLGRAG L EA  LI  MP+ P    W ALL AC+ H + E+ E   +KL+E
Sbjct: 606 EHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLE 665

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L+ D+DG + LLSNI+A+  RW DV  +  +M R G+ KIPG S ++    +  F  GDR
Sbjct: 666 LKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDR 725

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           TH Q  +I   L ++ K++K    A  +L    D+D EEK   L  HSEKLA+A+ ++T+
Sbjct: 726 THLQSQKIYETLADLIKRIK----ANFSLH---DVDDEEKGDQLSEHSEKLALAYAILTL 778

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P  PIRI KNLRIC D H+A  +IS   + EI++RD  RFH FK+GSCSC  +W
Sbjct: 779 PPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 30/381 (7%)

Query: 329 INLQNALIHMYSS-----CGEITTAEKLFDA----GHNLD-LISWNSMISGYLKCGSVEK 378
           IN  N L++  S+     C  +T A+ L       GH L+   +  ++I  Y+   S+  
Sbjct: 16  INTHNLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITN 75

Query: 379 ARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           A  L +  +      V  W+ +I      +  +  L LF  M+     PD  T   V  A
Sbjct: 76  AILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKA 135

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS-- 493
           C  +   + G  IH  + + G + N  +   +I MY K   V +A +VF     +G+   
Sbjct: 136 CGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDS 195

Query: 494 -SWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
            +WN+++  ++   + + ++ +F EM    G+ P+ +  V +L  C ++GL   G R  +
Sbjct: 196 VTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCG-RQVH 254

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
                  L  +      +VD+  + G +++A ++ E M    DV TW A++    ++G  
Sbjct: 255 GFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK-DVVTWNAMVTGYSQNGRF 313

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNI---HASKGRWDDVLEVR----GMMVRRGVVKIP 664
           E    +  K+ E + + D   V  S++   +A +G   + ++V     G   R  VV + 
Sbjct: 314 EDALSLFGKMREEKIESDV--VTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLM 371

Query: 665 GCSMIEANGIIHEFLAGDRTH 685
             S++ A   +   L G  TH
Sbjct: 372 --SLLSACASVGALLHGKETH 390


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/603 (40%), Positives = 351/603 (58%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP 255
           + S+L   V    +E  K ++ ++ +  I    + +  ++ L+    ++  A  LF  + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           K++L  W+ +I  Y  N  YE A+ L+  M D+ ++ D+     VL AC+ L+ ++ G  
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   ++ G+E  + +  ALI MY+                               KCG 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYA-------------------------------KCGC 152

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           VE AR +FD + E+DVV W++M++ Y+Q+ Q  E+L+L   M  +G++P E T V  I+A
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
                 L QGK +H Y  ++G + N  + T L+DMY K G V+ A  +F   EEK V SW
Sbjct: 213 SADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSW 272

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           NA+I G+AM+G A+++L++F EMK   V P+ ITFVGVL AC H GL++EG  HF SMI 
Sbjct: 273 NAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEGKMHFRSMIS 331

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           +  + P  +HY CM+DLLG  G L+EA +LI  M + PD   WGALL +CK HG+ EMGE
Sbjct: 332 DFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGE 391

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
               KLVEL+PD  G +V+LSN++A  G+WD V  +R +M+ +G+ K   CS IE    +
Sbjct: 392 LALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKV 451

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H FL+ D +HP+   I   L    K +K  GYAP    V  D++ +EK   +  HSE+LA
Sbjct: 452 HAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLA 511

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFGLI+ S    + I+KNLRIC DCH A KFIS+  +REI +RD +R+HHFK G CSC 
Sbjct: 512 IAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCG 571

Query: 796 DFW 798
           DFW
Sbjct: 572 DFW 574



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 201/447 (44%), Gaps = 63/447 (14%)

Query: 30  LSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           +S   + LQ C   ++ +   Q+ +++   G+  +   A++L+           ++ +  
Sbjct: 1   MSYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNL---YCICNSLTNAHL 57

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N F++N M+R Y      + AI LY  M +  +  D +T+P + +A +   +
Sbjct: 58  LFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSA 117

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + EGK IH  V+++G +SDV+V   LI+MYA CG + +AR++FD+    D+V WNS+LA 
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177

Query: 207 Y---------------------------------VNADN------VEEAKFIYNKMPERN 227
           Y                                  +ADN       E   + +    E N
Sbjct: 178 YSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESN 237

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
                +++ ++ + G+V  A  LF+ + +K +VSW+A+I+ Y  +    EAL LF  M  
Sbjct: 238 DKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-K 296

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
            +V+ D +  V VL+AC++  ++  G     ++     I   +     +I +   CG + 
Sbjct: 297 GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLE 356

Query: 347 TAEKLF-------DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWST 396
            A KL        DAG       W +++      G+VE      + ++E    D  ++  
Sbjct: 357 EAYKLIMEMRVEPDAG------VWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVI 410

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIR 423
           + + YAQ  ++     L   M + G++
Sbjct: 411 LSNMYAQAGKWDGVARLRDLMMNKGLK 437


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/756 (33%), Positives = 408/756 (53%), Gaps = 97/756 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNN--------VGVDNYTYPLLAQASALRLSVFEG 150
           +N+M+R +      +++  L   M+  N        V       P+ A+   + L    G
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL----G 61

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY--- 207
           K +H   +K   D ++ +NN L++MY+ CG ++ A+ +F  +   ++VSWN+++ G+   
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 208 -------------------VNADNVE-------------------------EAKFIYNKM 223
                              V AD V                          + +F+YN++
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL 181

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                  +N+ +  + + G+++ A R+F  +  K + SW+ALI  + Q+     +L   +
Sbjct: 182 ------VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 235

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    ++ D   V S+LSAC+ L  ++ G  VH   ++  +E                 
Sbjct: 236 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLE----------------- 278

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                          DL  + S++S Y+ CG +   +ALFDAM +K +VSW+T+I+GY Q
Sbjct: 279 --------------RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 324

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +      L +F +M  +GI+    +++ V  AC+ L +L  G+  HAY  K+ L+ ++ +
Sbjct: 325 NGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFI 384

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +LIDMY K G +  + +VF+G +EK  +SWNA+I+G+ ++GLA +++++F EM+++G 
Sbjct: 385 ACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGH 444

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+++TF+GVL AC H GL+ EG R+ + M     L+PN KHY C++D+LGRAG L +A 
Sbjct: 445 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 504

Query: 584 ELI-ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            ++ E M    DV  W +LL +C+ H + EMGE+V  KL EL+P+    +VLLSN++A  
Sbjct: 505 RVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGL 564

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G+W+DV +VR  M    + K  GCS IE N  +  F+ G+R      EI ++   +  K+
Sbjct: 565 GKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKI 624

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
              GY PDT+ V  D+ +EEK   L  HSEKLA+ +GLI  S    IR+ KNLRIC DCH
Sbjct: 625 SKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCH 684

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            AAK IS+  +REIVVRD  RFHHFK+G CSC D+W
Sbjct: 685 NAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 170/370 (45%), Gaps = 35/370 (9%)

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMI----DHRVMVDEVVVVSVLSACANLTVVKA 312
           ++ VSW+++I  +  N   EE+ +L   M+    D   M D   +V+VL  CA    +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VH  AVK+ ++  + L NAL+ MYS CG IT A+ +F   +N +++SWN+M+ G+  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G        FD + +        M++G                     ++ DE T+++ 
Sbjct: 121 EGDT---HGTFDVLRQ--------MLAG------------------GEDVKADEVTILNA 151

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +  C H   L   K +H Y  K     N ++    +  Y K G +  A  VFHG   K V
Sbjct: 152 VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTV 211

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
           +SWNALI G A +     SL+   +MK SG+ P+  T   +L AC  +  +  G +  + 
Sbjct: 212 NSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG-KEVHG 270

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            I  + LE +   Y  ++ L    G L   + L ++M     + +W  ++    ++G  +
Sbjct: 271 FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPD 329

Query: 613 MGERVGRKLV 622
               V R++V
Sbjct: 330 RALGVFRQMV 339



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 173/394 (43%), Gaps = 60/394 (15%)

Query: 18  VNAKPI-FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL 76
           +NA P+ F  +   S+ E H   C S KQ      + +   L+A+ F AS     S    
Sbjct: 149 LNAVPVCFHESFLPSLKELH---CYSLKQ------EFVYNELVANAFVASYAKCGS---- 195

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
               +SY+ ++F  + S     +N ++  + Q N P+ ++  +  M  + +  D++T   
Sbjct: 196 ----LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 251

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           L  A +   S+  GK +H  +++   + D++V  +++++Y  CG+L   + LFD      
Sbjct: 252 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 311

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMP-------------------------------- 224
           LVSWN+++ GY+     + A  ++ +M                                 
Sbjct: 312 LVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA 371

Query: 225 -------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                  E +   + S+I ++ + G++ ++ ++F  + +K   SW+A+I  Y  + + +E
Sbjct: 372 YALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKE 431

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALI 336
           A+ LF  M       D++  + VL+AC +  ++  G   +  +    G++  +     +I
Sbjct: 432 AIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVI 491

Query: 337 HMYSSCGEITTAEKLF--DAGHNLDLISWNSMIS 368
            M    G++  A ++   +     D+  W S++S
Sbjct: 492 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 525



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 12/248 (4%)

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHH----GIRPDEATLVSVISACTHLVALDQ 444
           ++ VSW++MI  ++ +    E+  L  EM          PD ATLV+V+  C     +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK +H +  K  L    +L   L+DMY K GC+ NA  +F     K V SWN ++ GF+ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 505 NGLADKSLEMFSEMKKSG--VTPNEITFVGVLGACRHMGLVDE-GHRHFNSMIQEHRLEP 561
            G    + ++  +M   G  V  +E+T +  +  C H   +      H  S+ QE     
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE--FVY 178

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG--ERVGR 619
           N       V    + G L  A+ +   +  S  V +W AL+G   +  D  +     +  
Sbjct: 179 NELVANAFVASYAKCGSLSYAQRVFHGIR-SKTVNSWNALIGGHAQSNDPRLSLDAHLQM 237

Query: 620 KLVELQPD 627
           K+  L PD
Sbjct: 238 KISGLLPD 245


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/697 (35%), Positives = 376/697 (53%), Gaps = 56/697 (8%)

Query: 157 VLKAGFDSDVYVNNTL-INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           +L   + +   VNN+  I+  +  G ++ ARK FD      + SWNSI++GY       E
Sbjct: 7   ILHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPRE 66

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A+ ++++MPERNI++ N ++  + +   + EA  +F+ MP++++VSW+A++  Y Q  M 
Sbjct: 67  ARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMV 126

Query: 276 EEALVLFMNM-----IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY-- 328
            EA +LF  M     +   VM   ++    +     L  +  G  V A    IG  C   
Sbjct: 127 VEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREG 186

Query: 329 ----------------INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
                           +     +I  Y     +  A KLF+       +SW SM+ GY  
Sbjct: 187 RVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTL 246

Query: 373 CGSVE-------------------------------KARALFDAMIEKDVVSWSTMISGY 401
            G +E                               KAR +FD M ++D  +W  MI  Y
Sbjct: 247 SGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAY 306

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
            +     E L LF +MQ  G+RP   +L+S++S C  L +L  G+ +HA++ +     + 
Sbjct: 307 ERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDV 366

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            + + L+ MY+K G +  A  VF     K +  WN++I G+A +GL +++L++F EM  S
Sbjct: 367 YVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLS 426

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G  PN++T + +L AC + G ++EG   F SM  +  + P  +HY C VD+LGRAG + +
Sbjct: 427 GTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDK 486

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A ELI SM + PD   WGALLGACK H   ++ E   +KL E++P++ G ++LLS+I+AS
Sbjct: 487 AMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINAS 546

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD-RTHPQINEIDNMLDEMAK 700
           + +W DV E+R  M  + V K PGCS IE    +H F  G  R HP+   I  ML++   
Sbjct: 547 RSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDG 606

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
            L+  GY+PD   V  D+D+EEK  +L RHSE+LA+A+GL+ +    PIR+MKNLR+C D
Sbjct: 607 LLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGD 666

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
           CH A K IS+  +REI++RD +RFHHF +G CSC D+
Sbjct: 667 CHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  + ++F  +E  +   +  M++AY ++    +A+ L+  M    V     +   +  
Sbjct: 280 EIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILS 339

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   S+  G+ +H H+++  FD DVYV + L+ MY  CG+L  A+ +FD  P  D++ 
Sbjct: 340 VCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIM 399

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFKEMP 255
           WNSI++GY +    EEA  ++++MP    + +   ++         G + E   +F+ M 
Sbjct: 400 WNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESME 459

Query: 256 KKDLVS-----WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            K  V+     +S  +    +    ++A+ L  +M    +  D  V  ++L AC
Sbjct: 460 SKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMT---IKPDATVWGALLGAC 510


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/558 (41%), Positives = 338/558 (60%), Gaps = 32/558 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  AC +F++M +     ++ ++  + ++   EEAL+ +  M +  V  D     ++L
Sbjct: 79  GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA L  V+ G  VHA  +K+G+E  + +QN+LI M                       
Sbjct: 139 KACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISM----------------------- 175

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                   Y KCG +    A+F+ M E+ V SWS +I+ +A    +S+ L L  +M + G
Sbjct: 176 --------YGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEG 227

Query: 422 I-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
             R +E+ LVSV+SACTHL ALD G+ +H ++ +N   +N I+ T+LI+MY+K G +   
Sbjct: 228 YWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKG 287

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           + +F    +K   S++ +I G AM+G   + L +F+EM + G+ P++I +VGVL AC H 
Sbjct: 288 MCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHA 347

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV EG + FN M  EH +EP  +HYGCMVDL+GRAG + EA ELI+SMPM P+   W +
Sbjct: 348 GLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRS 407

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL A K H + + GE   ++L +L       +V+LSN++A   RW+DV + R  M  +G+
Sbjct: 408 LLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGL 467

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            + PG S++E    +H F++ D  HPQ   +  ML +M  +LK EGY+PDT +V  D+D+
Sbjct: 468 SQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDE 527

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK+  L  HS+KLAIA+ LI  S  +PIRI++NLR+CNDCHT  K IS  FDREI VRD
Sbjct: 528 EEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRD 587

Query: 781 RHRFHHFKHGSCSCMDFW 798
           RHRFHHFK G+CSC D+W
Sbjct: 588 RHRFHHFKDGACSCRDYW 605



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 226/479 (47%), Gaps = 61/479 (12%)

Query: 22  PIFKPTINLSILETH----LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
           P   P ++  + E      L+KC + ++F Q  ++++  GL  D+F AS L+  +  L  
Sbjct: 19  PPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVA-TCALSD 77

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           +  M Y+  IF  ++    F FNTMMR +++    ++A+  YK M    V  DN+TYP L
Sbjct: 78  WGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTL 137

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +A A   +V EG  +H H+LK G ++DV+V N+LI+MY  CG++     +F++     +
Sbjct: 138 LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 198 VSWNSILA---------------------GYVNAD-----NVEEA--------------K 217
            SW++++                      GY  A+     +V  A               
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
           F+   +   N+I   S+I ++ + G++ +   LF++M KK+ +S+S +IS    +    E
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALI 336
            L +F  M++  +  D++V V VL+AC++  +V+ G    + + ++ GIE  I     ++
Sbjct: 318 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMV 377

Query: 337 HMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGY-----LKCGSVEKARALF--DAMIE 388
            +    G+I  A +L  +     + + W S++S       L+ G +  A+ LF  D+   
Sbjct: 378 DLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEI-AAKQLFKLDSQKA 436

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI--RPDEATLVSVISACTHLVALDQG 445
            D V  S M   YAQ  ++ +       M   G+  RP   +LV V       V+ D G
Sbjct: 437 SDYVVLSNM---YAQAQRWEDVAKTRTNMFSKGLSQRPG-FSLVEVKRKMHRFVSQDAG 491


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 368/708 (51%), Gaps = 74/708 (10%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+  L +  A R  +  G+ +H  +   G  S+   +  L NMY  C   + AR++FD  
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 193 PVLDLVSWNSILAGYVN----------------------ADNV----------------- 213
           P  D V+WN+++AGY                         D+V                 
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 214 --EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
             E   F      +  +  S +++  + + G V  A  +F  MP ++ VSW+A+I  Y  
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N    EA+ LF  M+   V V +  V++ L AC  L  +     VH L V++G+   +++
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NALI  Y+                               KC   + A  +F+ +  K  
Sbjct: 258 TNALITTYA-------------------------------KCKRADLAAQVFNELGNKKT 286

Query: 392 -VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            +SW+ MI G+ Q++   +   LF  MQ   +RPD  TLVSVI A   +    Q +WIH 
Sbjct: 287 RISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHG 346

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y  ++ L  +  + T LIDMY K G V  A  +F    ++ V +WNA+I G+  +G    
Sbjct: 347 YSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQA 406

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E+F EMK +G  PNE TF+ VL AC H GLVDEG ++F SM +++ LEP  +HYG MV
Sbjct: 407 AVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMV 466

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA   I++MP+ P ++ +GA+LGACK H + E+ E   + + EL P+   
Sbjct: 467 DLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGV 526

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
           +HVLL+NI+A+   W DV  VR  M ++G+ K PG S+I+    +H F +G   H    +
Sbjct: 527 YHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKD 586

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I   L ++ +++K  GY PDT  +  D++ + K   L  HSEKLAIA+GLI  +P   I+
Sbjct: 587 IYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQ 645

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR+CNDCH A K IS    REI++RD  RFHHFK G CSC D+W
Sbjct: 646 IKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 220/480 (45%), Gaps = 78/480 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASAL 143
           ++F  + S +   +N ++  Y +  +P  A+     M     G   D+ T   +  A A 
Sbjct: 72  RVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD 131

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++   + +H   L+AG D  V V+  +++ Y  CG + AAR +FD  PV + VSWN++
Sbjct: 132 ARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAM 191

Query: 204 LAGYVNADNVEEAKFIYNKMPER------------------------------------- 226
           + GY +  N  EA  ++ +M +                                      
Sbjct: 192 IDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGL 251

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFM 283
             N+  +N++I  + +      A ++F E+  KK  +SW+A+I  + QNE  E+A  LF 
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V  D   +VSV+ A A+++       +H  +++  ++  + +  ALI MYS CG
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCG 371

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            ++ A +LFD+  +  +I+WN+MI GY   GS                        G+ Q
Sbjct: 372 RVSIARRLFDSARDRHVITWNAMIHGY---GS-----------------------HGFGQ 405

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSI 462
                  + LF EM+  G  P+E T +SV++AC+H   +D+G+   A ++K+ GL+    
Sbjct: 406 -----AAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGME 460

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG---LADKSLEMFSEM 518
              T++D+  + G +D A         E G+S + A++    ++    LA++S ++  E+
Sbjct: 461 HYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFEL 520


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/656 (36%), Positives = 383/656 (58%), Gaps = 10/656 (1%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV----LDLVSWNSILAGYV 208
           +  ++L  G   D  V  T+I   A    L   +++   + V    LD V  +S+L  YV
Sbjct: 61  VFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYV 120

Query: 209 NADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----KKDLVSWSA 264
             D++++A+ +++K+P+  ++ S+++I  F RKG V E   LF +      + +LVSW+ 
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNG 180

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS + ++  Y +A+++F NM    +  D   V SVL A  +L +   G  +H   +K G
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG 240

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +     + +ALI MY  C   +    +F+    +D+ + N++++G  + G V+ A  +F 
Sbjct: 241 LGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFK 300

Query: 385 AM--IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
               ++ +VVSW++MI+  +Q+ +  E L LF EMQ  G++P+  T+  ++ AC ++ AL
Sbjct: 301 QFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAAL 360

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
             GK  H +  +NG+  +  +G+ LIDMY K G +  +   F     + + SWN+L+ G+
Sbjct: 361 LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGY 420

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
           AM+G   +++ +F  M++ G  P+ ++F  VL AC   GL +EG  +F+SM + H +E  
Sbjct: 421 AMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEAR 480

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            +HY CMV LLGR+G L+EA  +I+ MP  PD   WGALL +C+ H   ++GE   +++ 
Sbjct: 481 MEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVF 540

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL+P + G ++LLSNI+ASK  W +V  VR MM  RG+ K PG S IE    +H  LAGD
Sbjct: 541 ELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGD 600

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
            +HPQ+ +I   L ++  ++K  GY P T  V  D+++++KE  L  HSEKLA+  GL+ 
Sbjct: 601 SSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLN 660

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             P  P++++KNLRIC DCH   KFIS    REI VRD +RFH FK G CSC D+W
Sbjct: 661 TKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 194/426 (45%), Gaps = 55/426 (12%)

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           K  +S    I  + +   +   + +F  M+   ++ D  V+ +V+  CA L+ ++ G  +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H  A+  G+     + ++L+HMY     +  A  +FD      +++ +++IS + + G V
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 377 EKARALF----DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           ++ + LF    D  +E ++VSW+ MISG+ +   + + + +F  M   G++PD  ++ SV
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + A   L     G  IH Y+ K GL  +  + + LIDMY K  C      VF+  +E  V
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDV 276

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            + NAL+ G + NGL D +LE+F + K  G+  N +++  ++ +C   G   E    F  
Sbjct: 277 GACNALVTGLSRNGLVDNALEVFKQFK--GMDLNVVSWTSMIASCSQNGKDMEALELFRE 334

Query: 553 MIQEHRLEPNSKHYGC-----------------------------------MVDLLGRAG 577
           M Q   ++PNS    C                                   ++D+  + G
Sbjct: 335 M-QIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCG 393

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGD-------HEMGERVGRKLVELQPDHDG 630
            +  +    + MP + ++ +W +L+     HG         E+ +R G+K     PDH  
Sbjct: 394 RMLASRLCFDMMP-NRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQK-----PDHVS 447

Query: 631 FHVLLS 636
           F  +LS
Sbjct: 448 FTCVLS 453



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 41/210 (19%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +M+ +  Q     +A+ L++ M    V  ++ T P L  A     ++  GK  H   L
Sbjct: 312 WTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSL 371

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV---------- 208
           + G  +DVYV + LI+MYA CG + A+R  FD  P  +LVSWNS++AGY           
Sbjct: 372 RNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAIN 431

Query: 209 ----------NADNV---------------EEAKFIYNKMPERNIIAS-----NSMIVLF 238
                       D+V               EE  F ++ M   + + +     + M+ L 
Sbjct: 432 IFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLL 491

Query: 239 GRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
           GR G + EA  + K+MP + D   W AL+S
Sbjct: 492 GRSGRLEEAYAMIKQMPFEPDSCVWGALLS 521



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%)

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           C + + + +   A I K  +S    I  +++ + F   + +F  M   GI PD   L +V
Sbjct: 21  CSATKASLSQAHAHILKTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTV 80

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           I  C  L AL  GK +H +   +GL ++S++ ++L+ MY++   + +A  VF    + GV
Sbjct: 81  IKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGV 140

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            + +ALI  FA  G   ++ E+F + +  GV  N +++ G++      G
Sbjct: 141 VTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSG 189


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 268/761 (35%), Positives = 406/761 (53%), Gaps = 73/761 (9%)

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L+ F E  +++++FA +   + F +N M+  Y +  +  +A+ LY  M+   V  D YT+
Sbjct: 133 LVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTF 192

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + ++         G+ +H HVL+ GF  +V V N L+ MYA CGD+ AARK+FD   V
Sbjct: 193 PCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTV 252

Query: 195 LDLVSWNSILAGY-----VNA------------------------------DNVEEAKFI 219
           +D +SWN+++AG+      NA                               +V  AK +
Sbjct: 253 MDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEM 312

Query: 220 YNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           +    +R    ++   NS+I ++   G + +A  +F  M  +D ++W+A+IS YE+N   
Sbjct: 313 HGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFP 372

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           ++AL ++  M  + V  D++ + S L+ACA L  +  G  +H LA   G   YI + NA+
Sbjct: 373 DKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAI 432

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               K   ++KA  +F  M EKDVVSWS
Sbjct: 433 LEMYA-------------------------------KSKRIDKAIEVFKCMHEKDVVSWS 461

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +MI+G+  + +  E L  F  M    ++P+  T ++ ++AC    AL  GK IHA++ + 
Sbjct: 462 SMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRC 520

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G++    L   LID+Y+K G    A   F     K V SWN +I GF  +G  D +L  F
Sbjct: 521 GIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFF 580

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           ++M K G  P+E+TFV +L AC   G+V EG   F+SM +++ + PN KHY CMVDLL R
Sbjct: 581 NQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSR 640

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG L EA   I  MP++PD A WGALL  C+ H   E+GE   + ++ L+P+  G+HVLL
Sbjct: 641 AGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLL 700

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            +++A    WD +  VR  M  +G+    GCS +E  G++H FL  D +HPQI EI+ +L
Sbjct: 701 CDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVL 760

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           + + +++K  GYAP  +E     D+  K+     HSE+LA+AFGLI  +P   I + KN 
Sbjct: 761 EGIYERMKASGYAP--VESHCPEDEVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQ 818

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             C  CH   K IS    R+I+VRD  + HHFK GSCSC D
Sbjct: 819 YTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 194/409 (47%), Gaps = 48/409 (11%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+M+ +  R G    A R+F +MP++D+ SW+ ++  Y ++ + +EAL L+  M+   V
Sbjct: 126 GNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGV 185

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             D      VL +C  +   + G  VHA  ++ G    +++ NAL+ MY+ CG++  A K
Sbjct: 186 RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARK 245

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD+   +D ISWN+MI+G+ + G                                    
Sbjct: 246 VFDSMTVMDCISWNAMIAGHFENGECNAG------------------------------- 274

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L LF+ M H  ++P+  T+ SV  A   L  +   K +H    K G   +     +LI M
Sbjct: 275 LELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQM 334

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y  LG +  A  VF   + +   +W A+I G+  NG  DK+LE+++ M+ + V+P++IT 
Sbjct: 335 YASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITI 394

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-------GCMVDLLGRAGMLKEAE 583
              L AC  +G +D G       ++ H L   SK +         ++++  ++  + +A 
Sbjct: 395 ASALAACACLGSLDVG-------VKLHELA-ESKGFISYIVVTNAILEMYAKSKRIDKAI 446

Query: 584 ELIESMPMSPDVATWGALL-GACKKHGDHEMGERVGRKLVELQPDHDGF 631
           E+ + M    DV +W +++ G C  H + E        L +++P+   F
Sbjct: 447 EVFKCM-HEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTF 494



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 125/317 (39%), Gaps = 33/317 (10%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           DE   V++   C     V+ G    A A        + L NA++ M    GE   A ++F
Sbjct: 87  DEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAWRVF 146

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 D+ SWN M+ GY K G ++                               E L 
Sbjct: 147 AKMPERDVFSWNVMVGGYGKSGLLD-------------------------------EALD 175

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           L+  M   G+RPD  T   V+ +C  +     G+ +HA++ + G      +   L+ MY 
Sbjct: 176 LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYA 235

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G V  A +VF         SWNA+I G   NG  +  LE+F  M    V PN +T   
Sbjct: 236 KCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITS 295

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           V  A   +  V    +  + +  +     +      ++ +    GM+++A  +   M  +
Sbjct: 296 VTVASGLLSDVTFA-KEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMD-T 353

Query: 593 PDVATWGALLGACKKHG 609
            D  TW A++   +K+G
Sbjct: 354 RDAMTWTAMISGYEKNG 370



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 14/270 (5%)

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           ST +     H Q ++ L L   ++     PDE   V++   C    A++ G    A+   
Sbjct: 60  STELRALCSHGQLAQALWL---LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADD 116

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
                   LG  ++ M ++ G   +A  VF    E+ V SWN ++ G+  +GL D++L++
Sbjct: 117 RHAWFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDL 176

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           +  M  +GV P+  TF  VL +C  +     G R  ++ +              ++ +  
Sbjct: 177 YHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMG-REVHAHVLRFGFGEEVDVLNALMTMYA 235

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFH 632
           + G +  A ++ +SM +  D  +W A++    ++G+   G  +   ++  E+QP+     
Sbjct: 236 KCGDVMAARKVFDSMTVM-DCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPN----L 290

Query: 633 VLLSNIHASKGRWDDVL---EVRGMMVRRG 659
           + ++++  + G   DV    E+ G+ V+RG
Sbjct: 291 MTITSVTVASGLLSDVTFAKEMHGLAVKRG 320


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 344/572 (60%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++ A  S++ ++   G + +A +LF E+P + +V+W+AL S Y  +  + EA+ LF  M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  D   +V VLSAC ++  + +G  +     ++ ++     +N+ +          
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQ-----KNSFVR--------- 250

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                             ++++ Y KCG +EKAR++FD+M+EKD+V+WSTMI GYA +  
Sbjct: 251 -----------------TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSF 293

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E + LF++M    ++PD+ ++V  +S+C  L ALD G+W  + I ++    N  +   
Sbjct: 294 PKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANA 353

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G +    EVF   +EK +   NA I G A NG    S  +F + +K G++P+
Sbjct: 354 LIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPD 413

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF+G+L  C H GL+ +G R FN++   + L+   +HYGCMVDL GRAGML +A  LI
Sbjct: 414 GSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLI 473

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MPM P+   WGALL  C+   D ++ E V ++L+ L+P + G +V LSNI++  GRWD
Sbjct: 474 CDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWD 533

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +  EVR MM ++G+ KIPG S IE  G +HEFLA D++HP  ++I   L+++  +++L G
Sbjct: 534 EAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           + P T  V FD+++EEKE  L  HSEKLA+A GLI+      IR++KNLR+C DCH   K
Sbjct: 594 FVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMK 653

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+   REIVVRD +RFH F +GSCSC D+W
Sbjct: 654 LISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/617 (22%), Positives = 266/617 (43%), Gaps = 119/617 (19%)

Query: 13  TIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFS 72
           T+ S+ +     K  I+++    HL+         QI   +I   L  DTF  + L+K +
Sbjct: 5   TVPSATSKVQQIKTLISVACTVNHLK---------QIHVSLINHHLHHDTFLVNLLLKRT 55

Query: 73  TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132
              L F +  YS+ +F+  + PN F++N+++  ++  ++  + + L+  +  + + +  +
Sbjct: 56  ---LFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGF 112

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           T+PL+ +A     S   G  +H  V+K GF+ DV    +L+++Y+  G L+ A KLFDE 
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE--------------------------- 225
           P   +V+W ++ +GY  +    EA  ++ KM E                           
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGE 232

Query: 226 ------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                       +N     +++ L+ + G + +A  +F  M +KD+V+WS +I  Y  N 
Sbjct: 233 WIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNS 292

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             +E + LF+ M+   +  D+  +V  LS+CA+L  +  G    +L  +      + + N
Sbjct: 293 FPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMAN 352

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           ALI MY+ CG +    ++F      D++  N+ ISG  K G V+ + A+F          
Sbjct: 353 ALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG--------- 403

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                 + +  GI PD +T + ++  C           +HA + 
Sbjct: 404 ----------------------QTEKLGISPDGSTFLGLLCGC-----------VHAGLI 430

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           ++GL+            +  + CV  AL       ++ V  +  ++  +   G+ D +  
Sbjct: 431 QDGLRF-----------FNAISCV-YAL-------KRTVEHYGCMVDLWGRAGMLDDAYR 471

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572
           +  +M    + PN I +  +L  CR   LV +       + +   LEP N+ +Y  + ++
Sbjct: 472 LICDMP---MRPNAIVWGALLSGCR---LVKDTQLAETVLKELIALEPWNAGNYVQLSNI 525

Query: 573 LGRAGMLKEAEELIESM 589
               G   EA E+ + M
Sbjct: 526 YSVGGRWDEAAEVRDMM 542


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 356/622 (57%), Gaps = 42/622 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNA-DNVEEAKFIYNKMPERNIIASNSMIVLF 238
           GDL+ A + F  +P     ++N +LAGY  A   + +A+ +++++P  + ++ N+++   
Sbjct: 80  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCH 139

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
              G+   A RLF  MP +D+VSW+ ++S   ++   EEA  +F+               
Sbjct: 140 FASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFL--------------- 184

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHN 357
                              A+ V+  +       NA++  ++   +++ AE+ F +A   
Sbjct: 185 -------------------AMPVRNSVS-----WNAMVSGFACSRDMSAAEEWFRNAPEK 220

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D + W +M+SGY+  G+V KA   F+AM  +++VSW+ +++GY ++    + L LF  M
Sbjct: 221 GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 280

Query: 418 -QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
            +   ++P+ +TL SV+  C++L AL  GK IH +  K  L  N  +GT+L+ MY K G 
Sbjct: 281 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 340

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A ++F     + V +WNA+I G+A +G   +++ +F  MK  GV PN ITFV VL A
Sbjct: 341 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 400

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL D G R F  M + + +EP   HY CMVDLL RAG L+ A +LI SMP  P  +
Sbjct: 401 CIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPS 460

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            +G LL AC+ + + E  E    KL+E  P   G +V L+NI+A   +WDDV  VR  M 
Sbjct: 461 AYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMK 520

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
              VVK PG S IE  G++HEF + DR HPQ+  I   L ++A+++K  GY PD   V  
Sbjct: 521 DNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLH 580

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+D+  K   L RHSEKLAI+FGLI+ +P   +RI KNLR+C DCH AAK IS+  DREI
Sbjct: 581 DVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREI 640

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           ++RD  RFHHF+ G CSC D+W
Sbjct: 641 ILRDTTRFHHFRGGHCSCGDYW 662



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 152/314 (48%), Gaps = 64/314 (20%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D    NTL++ +   GD   AR+LF   PV D+VSWN++++G   +  VEEAK ++  MP
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 225 ERNIIASNSMIVLFGRK--------------------------------GNVAEACRLFK 252
            RN ++ N+M+  F                                   GNV +A   F+
Sbjct: 188 VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFE 247

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVK 311
            MP ++LVSW+A+++ Y +N   ++AL LF  M+ +  V  +   + SVL  C+NL+ + 
Sbjct: 248 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 307

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H   +K+ +   + +  +L+ MY  CG++++A KLF   H  D+++WN+MISGY 
Sbjct: 308 FGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY- 366

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                         AQH    E ++LF  M+  G+ P+  T V+
Sbjct: 367 ------------------------------AQHGDGKEAINLFERMKDEGVEPNWITFVA 396

Query: 432 VISACTHLVALDQG 445
           V++AC H    D G
Sbjct: 397 VLTACIHTGLCDFG 410



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYP-LLAQAS 141
           + + F  +   N   +N ++  Y++ +    A+ L++ M+   NV  +  T   +L   S
Sbjct: 242 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 301

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            L    F GK IH   +K     ++ V  +L++MY  CGDLS+A KLF E    D+V+WN
Sbjct: 302 NLSALGF-GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWN 360

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNI 228
           ++++GY    + +EA  ++ +M +  +
Sbjct: 361 AMISGYAQHGDGKEAINLFERMKDEGV 387



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF--AMNGLADKSLEMFSEMKK 520
           L T  +   ++ G +  A E F  T  K  +++N L+ G+  A+  LAD +  +F  +  
Sbjct: 68  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLAD-ARHLFDRIP- 125

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
              TP+ +++  +L      G  D   R F SM     +  N+     MV  L ++G ++
Sbjct: 126 ---TPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNT-----MVSGLSKSGAVE 177

Query: 581 EAEELIESMPMSPDVATWGALLG--ACKK 607
           EA+ +  +MP+   V +W A++   AC +
Sbjct: 178 EAKAVFLAMPVRNSV-SWNAMVSGFACSR 205


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 369/628 (58%), Gaps = 39/628 (6%)

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFKEMPKKDLVSWSAL 265
           +++  + + I+ ++   N+ +S+ ++  F        +V  A  +F+    K+   ++AL
Sbjct: 52  SNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNAL 111

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I    +N  +E ++  F+ M+  ++  D +    VL + A L+    G ++H   +K G+
Sbjct: 112 IRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGL 171

Query: 326 E-----------CYINLQ------------------------NALIHMYSSCGEITTAEK 350
           E            Y+ ++                        N LIH Y   G++  A +
Sbjct: 172 EFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATE 231

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LFD+    D  SWNS+I+G++K G + +A+ LF  M EK+VVSW+TM++G++Q+    + 
Sbjct: 232 LFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKA 291

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L  F  M   G RP++ T+VS +SAC  + ALD G  IH Y+  NG K+N ++GT L+DM
Sbjct: 292 LETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDM 351

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G +++A +VFH T+EKG+  W+ +I G+A++G   K+L+ F  MK +G  P+ + F
Sbjct: 352 YAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVF 411

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           + VL AC H G V+EG + F++M + + +EP+ KHY  +VD+LGRAG L EA + I +MP
Sbjct: 412 LAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMP 471

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           ++PD   WGAL  AC+ H + EM E   +KL++L+P H G +V LSN +AS GRWDD   
Sbjct: 472 ITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAER 531

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR  M   G  K PG S IE +  +H F+AGD TH +  EI + LDE++   + +GY  +
Sbjct: 532 VRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKE 591

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
              V  +I++EEKE  L  HSEKLA+AFG+++  P   +RI+KNLR+C DCH+  K+ S+
Sbjct: 592 IECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASK 651

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              REI++RD  RFHHF  G CSC D+W
Sbjct: 652 MSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 118/303 (38%), Gaps = 54/303 (17%)

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           E   + +I A      L Q   IH  + +  +  +S + T  I     L  VD A+ +F 
Sbjct: 42  ETHFIDLIHASNSTHKLRQ---IHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQ 98

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL----------- 534
             E K    +NALI G A N   + S+  F  M K  ++P+ +TF  VL           
Sbjct: 99  RFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGV 158

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLE------------------PNSKHYG------CMV 570
           G   H G++  G   F+S ++   ++                  P S   G       ++
Sbjct: 159 GRALHCGILKFG-LEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLI 217

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
               R G L +A EL +SMP   D  +W +L+    K GD  MG R     V++   +  
Sbjct: 218 HGYCRMGDLVKATELFDSMP-KKDTGSWNSLINGFMKMGD--MG-RAKELFVKMPEKNVV 273

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRG--------VVKIPGCSMI---EANGIIHEFL 679
               + N  +  G  +  LE    M+  G        V  +  C+ I   +A   IH +L
Sbjct: 274 SWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL 333

Query: 680 AGD 682
           +G+
Sbjct: 334 SGN 336


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/717 (34%), Positives = 394/717 (54%), Gaps = 42/717 (5%)

Query: 86   KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            ++F  + +P   ++N  +   +Q    Q+ + L++ M  + +  +  T   + QA     
Sbjct: 730  QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 789

Query: 146  SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            ++   K IH +V + G DSDV + N LI+MY+  G L  AR++FD     +  SWNS+++
Sbjct: 790  ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMIS 849

Query: 206  GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
             Y     + +A  ++ ++   ++                           K D+V+W+ L
Sbjct: 850  SYAALGFLNDAWSLFYELESSDM---------------------------KPDIVTWNCL 882

Query: 266  ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
            +S +  +   EE L +   M       +   + SVL A + L  +  G   H   ++ G 
Sbjct: 883  LSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGF 942

Query: 326  ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
            +C + +  +LI MY     + +A+ +FD   N ++ +WNS++SGY   G  E A  L + 
Sbjct: 943  DCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQ 1002

Query: 386  M----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
            M    I+ D+V+W+ MISGYA    +      FM        P+ A++  ++ AC  L  
Sbjct: 1003 MEKEGIKPDLVTWNGMISGYA---MWGCARKAFM--------PNSASITCLLRACASLSL 1051

Query: 442  LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
            L +GK IH    +NG   +  + T LIDMY K   + NA +VF   + K ++SWN +I+G
Sbjct: 1052 LQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMG 1111

Query: 502  FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            FA+ GL  +++ +F+EM+K GV P+ ITF  +L AC++ GL+ EG ++F+SMI ++R+ P
Sbjct: 1112 FAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVP 1171

Query: 562  NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
              +HY CMVDLLGRAG L EA +LI +MP+ PD   WGALLG+C+ H +    E   + L
Sbjct: 1172 RLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNL 1231

Query: 622  VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
             +L+P++   ++L+ N+++   RW+D+  +R +M   GV      S I+ N  +H F + 
Sbjct: 1232 FKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSD 1291

Query: 682  DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
            ++ HP   +I   L ++  ++K  GY PD   V  ++D+ EK+  L  H+EKLAI +GLI
Sbjct: 1292 EKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLI 1351

Query: 742  TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             +    PIR++KN RIC+DCH+AAK+IS    RE+ +RD  RFHHF+ G CSC DFW
Sbjct: 1352 KMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 213/438 (48%), Gaps = 61/438 (13%)

Query: 233  SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
            +++  +GR   + +A ++F EMP  + + W+  I    Q+E  ++ + LF  M    +  
Sbjct: 714  ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKA 773

Query: 293  DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            +   +V VL AC  +  + A   +H    + G++  ++L N LI MYS  G++  A ++F
Sbjct: 774  ETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVF 833

Query: 353  DAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFS 408
            D+  N +  SWNSMIS Y   G +  A +LF  +    ++ D+V+W+ ++SG+  H    
Sbjct: 834  DSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 893

Query: 409  ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            E L++   MQ  G +P+ +++ SV+ A + L  L+ GK  H Y+ +NG   +  +GT+LI
Sbjct: 894  EVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLI 953

Query: 469  DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            DMY+K   + +A  VF   + + + +WN+L+ G++  G+ + +L + ++M+K G+ P+ +
Sbjct: 954  DMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLV 1013

Query: 529  TFVG------------------------VLGACRHMGLVDEG------------------ 546
            T+ G                        +L AC  + L+ +G                  
Sbjct: 1014 TWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFV 1073

Query: 547  -------HRHFNSMIQEHRLEPNSKH-----YGCMVDLLGRAGMLKEAEELIESMP---M 591
                   +   +S+   H++    ++     + CM+      G+ KEA  +   M    +
Sbjct: 1074 ATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGV 1133

Query: 592  SPDVATWGALLGACKKHG 609
             PD  T+ ALL ACK  G
Sbjct: 1134 GPDAITFTALLSACKNSG 1151



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 152/356 (42%), Gaps = 33/356 (9%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE-MYEEALVLFMNMIDH 288
           A+ ++I  +   G+   A  +F     ++ + W++ +  ++ +       L +F  +   
Sbjct: 609 AAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGK 668

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V+ D  V    L  C  +  +  G  +H   +K G +  + L+ AL++ Y         
Sbjct: 669 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYG-------- 720

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  +C  +EKA  +F  M   + + W+  I    Q ++  
Sbjct: 721 -----------------------RCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQ 757

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           + + LF +MQ   ++ + AT+V V+ AC  + AL+  K IH Y+ + GL  +  L   LI
Sbjct: 758 KGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLI 817

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY K G ++ A  VF   E +  SSWN++I  +A  G  + +  +F E++ S + P+ +
Sbjct: 818 SMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIV 877

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           T+  +L      G  +E       M Q    +PNS     ++  +   G L   +E
Sbjct: 878 TWNCLLSGHFLHGYKEEVLNILQRM-QGEGFKPNSSSMTSVLQAISELGFLNMGKE 932



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 50/295 (16%)

Query: 363 WN------SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY-AQHDQFSETLSLFM 415
           WN      ++IS YL  G    A  +F   + ++ + W++ +  + +        L +F 
Sbjct: 604 WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 663

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E+   G+  D       +  CT ++ +  G  IH  + K G  ++  L   L++ Y +  
Sbjct: 664 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            ++ A +VFH         WN  II    +    K +E+F +M+ S +     T V VL 
Sbjct: 724 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 536 ACRHMGLVDE-----------------------------------GHRHFNSMIQEHRLE 560
           AC  MG ++                                      R F+SM  E+R  
Sbjct: 784 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM--ENR-- 839

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGALLGACKKHGDHE 612
            N+  +  M+      G L +A  L   +ES  M PD+ TW  LL     HG  E
Sbjct: 840 -NTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 893


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/704 (35%), Positives = 378/704 (53%), Gaps = 76/704 (10%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--ESP 193
           LL  A+ L+ S+     IH  ++     + +   NTL+ +YA CG +     LF+    P
Sbjct: 103 LLNNAAKLK-SLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHP 161

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI------------------------- 228
             ++V+W +++     ++   +A   +N+M    I                         
Sbjct: 162 STNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQ 221

Query: 229 --------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                           + +++ ++ + G++  A  +F EMP ++LVSW+++I  + +N++
Sbjct: 222 IHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKL 281

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           Y  A+ +F  ++   +  D+V + SVLSACA L  +  G  VH   VK G+   + ++N+
Sbjct: 282 YGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNS 339

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY                                KCG  E A  LF    ++DVV+W
Sbjct: 340 LVDMYC-------------------------------KCGLFEDATKLFCGGGDRDVVTW 368

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           + MI G  +   F +  + F  M   G+ PDEA+  S+  A   + AL QG  IH+++ K
Sbjct: 369 NVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G   NS + ++L+ MY K G + +A +VF  T+E  V  W A+I  F  +G A++++++
Sbjct: 429 TGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKL 488

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F EM   GV P  ITFV VL AC H G +D+G ++FNSM   H ++P  +HY CMVDLLG
Sbjct: 489 FEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLG 548

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           R G L+EA   IESMP  PD   WGALLGAC KH + EMG  V  +L +L+PD+ G ++L
Sbjct: 549 RVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+   G  ++  EVR +M   GV K  GCS I+       F A DR+H +  EI  M
Sbjct: 609 LSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGM 668

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           L ++ + +K  GY  +T + A +  +  +E +L+ HSEKLA+AFGL+ + P +P+RI KN
Sbjct: 669 LQKLKELIKRRGYVAET-QFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKN 727

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR C DCHT  KF S  F REI+VRD +RFH F +GSCSCMD+W
Sbjct: 728 LRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 141/621 (22%), Positives = 260/621 (41%), Gaps = 118/621 (19%)

Query: 9   HLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRL 68
            L ++ +S V     F    +L  L  +  K +S K  TQI SQ++ T   A       L
Sbjct: 79  QLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHAS------L 132

Query: 69  IKFSTDLLPFIE---MSYSFKIFAFLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLML 123
              +T LL + +   + ++  +F     P  N   + T++    + N P QA+  +  M 
Sbjct: 133 ANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMR 192

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
              +  +++T+  +  A A    + EG+ IH  + K  F +D +V   L++MYA CG + 
Sbjct: 193 TTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSML 252

Query: 184 AARKLFDESPVLDLVSWNSILAGYV------------------NADNV------------ 213
            A  +FDE P  +LVSWNS++ G+V                    D V            
Sbjct: 253 LAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGL 312

Query: 214 ---EEAKFIYNKMPERNIIA----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
              +  K ++  + +R ++      NS++ ++ + G   +A +LF     +D+V+W+ +I
Sbjct: 313 VELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMI 372

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
               +   +E+A   F  MI   V  DE    S+  A A++  +  GT +H+  +K G  
Sbjct: 373 MGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHV 432

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               + ++L+ MY  CG +  A ++F      +++ W +MI+ + + G   +A       
Sbjct: 433 KNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEA------- 485

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG- 445
                                   + LF EM + G+ P+  T VSV+SAC+H   +D G 
Sbjct: 486 ------------------------IKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGF 521

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K+ ++    + +K        ++D+  ++G ++ A                         
Sbjct: 522 KYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRF---------------------- 559

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSK 564
                       ++     P+ + +  +LGAC     V+ G      +    +LEP N  
Sbjct: 560 ------------IESMPFEPDSLVWGALLGACGKHANVEMGREVAERLF---KLEPDNPG 604

Query: 565 HYGCMVDLLGRAGMLKEAEEL 585
           +Y  + ++  R GML+EA+E+
Sbjct: 605 NYMLLSNIYIRHGMLEEADEV 625


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/604 (38%), Positives = 353/604 (58%), Gaps = 38/604 (6%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS-----NSMIVLFGRKGNVAEACRLFKEM 254
           ++SI+A      N+  A+ I+  +  R+ +A      NS+I ++ + G V++A  +F +M
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHL-SRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKM 121

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P +D+VSW+ LI+ Y QN M  EA+ L  +M+  R   +     S+L A         G 
Sbjct: 122 PSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGE 181

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +HALAVK   +  + + +AL+ MY+                               +C 
Sbjct: 182 QMHALAVKYNWDEDVYVGSALLDMYA-------------------------------RCE 210

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            ++ A  +FD ++ K+ VSW+ +I+G+A+      TL  F EMQ +G      T  S+ S
Sbjct: 211 QMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 270

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           A   + AL+QG+W+HA++ K+G K+ + +G T++ MY K G + +A +VF   +++ + +
Sbjct: 271 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 330

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN ++   A  GL  +++  F E++K G+  N+ITF+ VL AC H GLV EG +H+  M+
Sbjct: 331 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG-KHYFDMM 389

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +++ ++P   HY   VDLLGRAG+LKEA   +  MPM P  A WGALLGAC+ H + +MG
Sbjct: 390 KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMG 449

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           +     + EL PD  G  VLL NI+AS G+W+D   VR MM   GV K P CS ++    
Sbjct: 450 QYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENS 509

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           +H F+A D THP+  +I  M +E+  ++K  GY P+T  V   I+++E+ET L  HSEK+
Sbjct: 510 VHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKI 569

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+AF LI +     IRIMKN+RIC DCH+A K++S+ F REIVVRD +RFHHF  GSCSC
Sbjct: 570 ALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSC 629

Query: 795 MDFW 798
            D+W
Sbjct: 630 GDYW 633



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 167/390 (42%), Gaps = 71/390 (18%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + IH H+ ++    D ++ N+LI+MY  CG +S AR +FD+ P  D+VSW  ++AGY  
Sbjct: 79  ARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQ 138

Query: 210 ----------ADNVEEAKFIYNKMP-----------------------------ERNIIA 230
                       ++  A+F  N                                + ++  
Sbjct: 139 NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYV 198

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            ++++ ++ R   +  A  +F  +  K+ VSW+ALI+ + +    E  L+ F  M  +  
Sbjct: 199 GSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGF 258

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
                   S+ SA A +  ++ G  VHA  +K G +    + N ++ MY+  G +  A K
Sbjct: 259 GATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARK 318

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD     DL++WN                               TM++  AQ+    E 
Sbjct: 319 VFDRMDKRDLVTWN-------------------------------TMLTALAQYGLGKEA 347

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           ++ F E++  GI+ ++ T +SV++AC+H   + +GK     ++   ++       + +D+
Sbjct: 348 VAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDL 407

Query: 471 YMKLGCVDNAL-EVFHGTEEKGVSSWNALI 499
             + G +  AL  VF    E   + W AL+
Sbjct: 408 LGRAGLLKEALIFVFKMPMEPTAAVWGALL 437



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 39/266 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  + S +   +  ++  Y Q  +P +AI L   ML      + +T+  L +A+     
Sbjct: 117 VFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGG 176

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ +H   +K  +D DVYV + L++MYA C  +  A  +FD     + VSWN+++AG
Sbjct: 177 CSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAG 236

Query: 207 YVNADNVEE---------------AKFIYNKM------------------------PERN 227
           +    + E                  F Y+ M                         +  
Sbjct: 237 FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLT 296

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               N+M+ ++ + G++ +A ++F  M K+DLV+W+ +++   Q  + +EA+  F  +  
Sbjct: 297 AFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRK 356

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAG 313
             + ++++  +SVL+AC++  +VK G
Sbjct: 357 CGIQLNQITFLSVLTACSHGGLVKEG 382



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 25/246 (10%)

Query: 415 MEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           +++ H G + P      S+I+AC     L   + IHA++ ++ L  ++ L  +LI MY K
Sbjct: 48  LDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCK 107

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G V +A  VF     + V SW  LI G+A N +  +++ +  +M ++   PN  TF  +
Sbjct: 108 CGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSL 167

Query: 534 L---GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           L   GAC    + ++ H    ++  ++  + +      ++D+  R   +  A  + + + 
Sbjct: 168 LKATGACGGCSIGEQMH----ALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL- 222

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHAS------ 641
           +S +  +W AL+    +  D   GE    K  E+Q   +GF   H   S++ ++      
Sbjct: 223 VSKNEVSWNALIAGFARKAD---GETTLMKFAEMQ--RNGFGATHFTYSSMFSAFARIGA 277

Query: 642 --KGRW 645
             +GRW
Sbjct: 278 LEQGRW 283



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 40/227 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  +  +F  L S N   +N ++  + ++   +  +  +  M  N  G  ++TY  +  
Sbjct: 211 QMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 270

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +G+ +H H++K+G     +V NT++ MYA  G +  ARK+FD     DLV+
Sbjct: 271 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 330

Query: 200 WN-----------------------------------SILAGYVNADNVEEAKFIYNKMP 224
           WN                                   S+L    +   V+E K  ++ M 
Sbjct: 331 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK 390

Query: 225 ERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALI 266
           + N+        S + L GR G + EA     +MP +   + W AL+
Sbjct: 391 DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 437


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/481 (46%), Positives = 307/481 (63%), Gaps = 31/481 (6%)

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           A A L  V+ G  VH++A++ G E  + +QN L+HMY++C                    
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC-------------------- 43

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
                      G  E A  LF+ M E+++V+W+++I+GYA + + +E L+LF EM   G+
Sbjct: 44  -----------GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV 92

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
            PD  T+VS++SAC  L AL  G+  H Y+ K GL  N   G  L+D+Y K G +  A +
Sbjct: 93  EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHK 152

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   EEK V SW +LI+G A+NG   ++LE+F E+++ G+ P+EITFVGVL AC H G+
Sbjct: 153 VFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGM 212

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           VDEG  +F  M +E+ + P  +HYGCMVDLLGRAG++K+A E I++MPM P+   W  LL
Sbjct: 213 VDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLL 272

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
           GAC  HG   +GE    +L++L+P H G +VLLSN++AS+ RW DV +VR  M+R GV K
Sbjct: 273 GACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKK 332

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PG S++E    +HEF+ GDR+HPQ  EI   L E+ K LKLEGY P    V  DI++EE
Sbjct: 333 TPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEE 392

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           KET L  HSEK+AIAF LI  +   PIR++KNLR+C DCH A K IS+ FDREIVVRDR 
Sbjct: 393 KETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRS 452

Query: 783 R 783
           R
Sbjct: 453 R 453



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 31/218 (14%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N+++ ++   G+   A +LF+ M +++LV+W+++I+ Y  N    EAL LF  M  
Sbjct: 30  VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 89

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  D   +VS+LSACA L  +  G   H   VK+G++  ++  NAL+ +Y+ CG I  
Sbjct: 90  RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 149

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A K+FD      ++SW S+I G                            ++G+ +    
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVGL--------------------------AVNGFGK---- 179

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
            E L LF E++  G+ P E T V V+ AC+H   +D+G
Sbjct: 180 -EALELFKELERKGLMPSEITFVGVLYACSHCGMVDEG 216



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 150/334 (44%), Gaps = 50/334 (14%)

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           + +A A  + V EG+ +H   ++ GF+S V+V NTL++MYA CG   +A KLF+     +
Sbjct: 1   MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPER------------------------------ 226
           LV+WNS++ GY       EA  ++ +M  R                              
Sbjct: 61  LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120

Query: 227 ---------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                    N+ A N+++ L+ + G++ +A ++F EM +K +VSW++LI     N   +E
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 180

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALI 336
           AL LF  +    +M  E+  V VL AC++  +V  G      +  + GI   I     ++
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 240

Query: 337 HMYSSCGEITTAEKLF-DAGHNLDLISWNSM-----ISGYLKCGSVEKARAL-FDAMIEK 389
            +    G +  A +   +     + + W ++     I G+L  G V +A+ L  +     
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 300

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           D V  S +   YA   ++S+   +   M   G++
Sbjct: 301 DYVLLSNL---YASEQRWSDVHKVRRTMLREGVK 331


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 356/622 (57%), Gaps = 42/622 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNA-DNVEEAKFIYNKMPERNIIASNSMIVLF 238
           GDL+ A + F  +P     ++N +LAGY  A   + +A+ +++++P  + ++ N+++   
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCH 90

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
              G+   A RLF  MP +D+VSW+ ++S   ++   EEA  +F+               
Sbjct: 91  FASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFL--------------- 135

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHN 357
                              A+ V+  +       NA++  ++   +++ AE+ F +A   
Sbjct: 136 -------------------AMPVRNSVS-----WNAMVSGFACSRDMSAAEEWFRNAPEK 171

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D + W +M+SGY+  G+V KA   F+AM  +++VSW+ +++GY ++    + L LF  M
Sbjct: 172 GDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 231

Query: 418 -QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
            +   ++P+ +TL SV+  C++L AL  GK IH +  K  L  N  +GT+L+ MY K G 
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A ++F     + V +WNA+I G+A +G   +++ +F  MK  GV PN ITFV VL A
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL D G R F  M + + +EP   HY CMVDLL RAG L+ A +LI SMP  P  +
Sbjct: 352 CIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPS 411

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            +G LL AC+ + + E  E    KL+E  P   G +V L+NI+A   +WDDV  VR  M 
Sbjct: 412 AYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMK 471

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
              VVK PG S IE  G++HEF + DR HPQ+  I   L ++A+++K  GY PD   V  
Sbjct: 472 DNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLH 531

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+D+  K   L RHSEKLAI+FGLI+ +P   +RI KNLR+C DCH AAK IS+  DREI
Sbjct: 532 DVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREI 591

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           ++RD  RFHHF+ G CSC D+W
Sbjct: 592 ILRDTTRFHHFRGGHCSCGDYW 613



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 152/314 (48%), Gaps = 64/314 (20%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D    NTL++ +   GD   AR+LF   PV D+VSWN++++G   +  VEEAK ++  MP
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 225 ERNIIASNSMIVLFGRK--------------------------------GNVAEACRLFK 252
            RN ++ N+M+  F                                   GNV +A   F+
Sbjct: 139 VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFE 198

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVK 311
            MP ++LVSW+A+++ Y +N   ++AL LF  M+ +  V  +   + SVL  C+NL+ + 
Sbjct: 199 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 258

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H   +K+ +   + +  +L+ MY  CG++++A KLF   H  D+++WN+MISGY 
Sbjct: 259 FGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY- 317

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                         AQH    E ++LF  M+  G+ P+  T V+
Sbjct: 318 ------------------------------AQHGDGKEAINLFERMKDEGVEPNWITFVA 347

Query: 432 VISACTHLVALDQG 445
           V++AC H    D G
Sbjct: 348 VLTACIHTGLCDFG 361



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASA 142
           + + F  +   N   +N ++  Y++ +    A+ L++ M+   NV  +  T   +    +
Sbjct: 193 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++  GK IH   +K     ++ V  +L++MY  CGDLS+A KLF E    D+V+WN+
Sbjct: 253 NLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNA 312

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI 228
           +++GY    + +EA  ++ +M +  +
Sbjct: 313 MISGYAQHGDGKEAINLFERMKDEGV 338



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF--AMNGLADKSLEMFSEMKK 520
           L T  +   ++ G +  A E F  T  K  +++N L+ G+  A+  LAD +  +F  +  
Sbjct: 19  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLAD-ARHLFDRIP- 76

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
              TP+ +++  +L      G  D   R F SM     +  N+     MV  L ++G ++
Sbjct: 77  ---TPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNT-----MVSGLSKSGAVE 128

Query: 581 EAEELIESMPMSPDVATWGALLG--ACKK 607
           EA+ +  +MP+   V +W A++   AC +
Sbjct: 129 EAKAVFLAMPVRNSV-SWNAMVSGFACSR 156


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/636 (37%), Positives = 349/636 (54%), Gaps = 40/636 (6%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           N +L  Y     + +A+ +++KM +R+  + N+++  + + G++      F  MP +D V
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           S++  I+ +  N   +E+L LF  M        E  +VS+L+A A L  ++ G  +H   
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK-------- 372
           +       + + NAL  MY+ CGEI  A  LFD     +L+SWN MISGY K        
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 373 ---------------------------CGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                      CG V++AR +F    EKD+V W+ M+ GYA++ 
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNG 301

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  + L LF EM    I PD  TL SV+S+C  L +L  G+ +H      GL  N ++ +
Sbjct: 302 REEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSS 361

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LIDMY K G +D+A  VF+    + V SWNA+I+G A NG    +LE+F  M +    P
Sbjct: 362 ALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKP 421

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +TF+G+L AC H   +++G  +F+S+  +H + P   HY CMV+LLGR G +++A  L
Sbjct: 422 DNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVAL 481

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I++M   PD   W  LL  C   GD    E   R L EL P     +++LSN++AS GRW
Sbjct: 482 IKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRW 541

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            DV  VR +M  + V K  G S IE +  +H F + DRTHP+  +I   L+ +  KL+ E
Sbjct: 542 KDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEE 601

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN---PIRIMKNLRICNDCH 762
           G+ P+T  V  D+ ++EK  ++  HSEKLA+AFGL  I  PN   PIRI+KN+RICNDCH
Sbjct: 602 GFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGL--IKKPNGISPIRIIKNIRICNDCH 659

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              KF SR   R+I++RD +RFHHF  G CSC D W
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 178/354 (50%), Gaps = 39/354 (11%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +NT +  +   + PQ+++ L+K M         YT   +  ASA  L +  GK IH  ++
Sbjct: 123 YNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSII 182

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
              F  +V++ N L +MYA CG++  AR LFD     +LVSWN +++GY      E+   
Sbjct: 183 VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIG 242

Query: 219 IYNK------MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           + ++      MP++  +  +++I  + + G V EA R+F E  +KD+V W+A++  Y +N
Sbjct: 243 LLHQMRLSGHMPDQ--VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
              E+AL+LF  M+   +  D   + SV+S+CA L  +  G +VH  ++  G+   + + 
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           +ALI MYS CG I  A  +F+     +++SWN+MI G  + G                  
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNG------------------ 402

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                      HD+  + L LF  M     +PD  T + ++SAC H   ++QG+
Sbjct: 403 -----------HDK--DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 44/260 (16%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ 108
           +L QM L+G + D    S +I          E   + ++F+  +  +   +  MM  Y +
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDE---ARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
               + A+ L+  ML  ++  D+YT   +  + A   S+  G+ +H   + AG ++++ V
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           ++ LI+MY+ CG +  AR +F+  P  ++VSWN+++ G     + ++A  ++  M ++  
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 229 IASN----------------------------------------SMIVLFGRKGNVAEAC 248
              N                                         M+ L GR G + +A 
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 249 RLFKEMP-KKDLVSWSALIS 267
            L K M    D + WS L+S
Sbjct: 480 ALIKNMAHDPDFLIWSTLLS 499


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 269/761 (35%), Positives = 406/761 (53%), Gaps = 73/761 (9%)

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L+ F E  +++++FA +   + F +N M+  Y +  + ++A+ LY  M+   V  D YT+
Sbjct: 139 LVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTF 198

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P + ++         G+ +H HVL+ GF  +V V N L+ MYA CGD+ AARK+FD   V
Sbjct: 199 PCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAV 258

Query: 195 LDLVSWNSILAGY-----VNA----------DNVEE--------------------AKFI 219
           +D +SWN+++AG+      NA          D V+                     AK +
Sbjct: 259 MDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEM 318

Query: 220 YNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           +    +R    ++   NS+I ++   G + +A  +F  M  +D +SW+A+IS YE+N   
Sbjct: 319 HGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFP 378

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           ++AL ++  M  + V  D++ + S L+ACA L  +  G  +H LA   G   Y+ + NAL
Sbjct: 379 DKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNAL 438

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MY+                               K   ++KA  +F  M EKDVVSWS
Sbjct: 439 LEMYA-------------------------------KSKRIDKAIEVFKCMPEKDVVSWS 467

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           +MI+G+  + +  E L  F  M    ++P+  T ++ ++AC    AL  GK IHA++ + 
Sbjct: 468 SMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRC 526

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+     L   LID+Y+K G    A   F     K V SWN +I GF  +G  + +L  F
Sbjct: 527 GIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFF 586

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           ++M K G  P+E+TFV +L AC   G+V EG   F+SM  ++ + PN KHY CMVDLL R
Sbjct: 587 NQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSR 646

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
            G L EA   I  MP++PD A WGALL  C+ H   E+GE   + ++EL+P+  G+HVLL
Sbjct: 647 VGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLL 706

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            +++A  G WD +  VR  M  +G+    GCS +E  G++H FL  D +HPQI EI+ +L
Sbjct: 707 CDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVL 766

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           + + +++K  G AP  +E     D+  K+     HSE+LA+AFGLI  +P   I + KN 
Sbjct: 767 EGIYERMKASGCAP--VESHSPEDKVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQ 824

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
             C  CH   K IS    R+I+VRD  + HHFK GSCSC D
Sbjct: 825 YTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 193/409 (47%), Gaps = 48/409 (11%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+M+ +  R G    A R+F +MP++D+ SW+ ++  Y +  + EEAL L+  M+   V
Sbjct: 132 GNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGV 191

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             D      VL +C  +   + G  VHA  ++ G    +++ NAL+ MY+ CG++  A K
Sbjct: 192 RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARK 251

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD+   +D ISWN+MI+G+ + G                                    
Sbjct: 252 VFDSMAVMDCISWNAMIAGHFENGECNAG------------------------------- 280

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L LF+ M    ++P+  T+ SV  A   L  +   K +H    K G   +     +LI M
Sbjct: 281 LELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQM 340

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y  LG +  A  VF   + +   SW A+I G+  NG  DK+LE+++ M+ + V+P++IT 
Sbjct: 341 YASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITI 400

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-------GCMVDLLGRAGMLKEAE 583
              L AC  +G +D G       ++ H L   SK +         ++++  ++  + +A 
Sbjct: 401 ASALAACACLGSLDVG-------VKLHEL-AESKGFMSYVVVTNALLEMYAKSKRIDKAI 452

Query: 584 ELIESMPMSPDVATWGALL-GACKKHGDHEMGERVGRKLVELQPDHDGF 631
           E+ + MP   DV +W +++ G C  H + E        L +++P+   F
Sbjct: 453 EVFKCMP-EKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTF 500



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 127/319 (39%), Gaps = 37/319 (11%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           DE   V++   C     V+ G    A A        + L NA++ M    GE   A ++F
Sbjct: 93  DEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAWRVF 152

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 D+ SWN M+ GY K G +E                               E L 
Sbjct: 153 AKMPERDVFSWNVMVGGYGKAGLLE-------------------------------EALD 181

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           L+  M   G+RPD  T   V+ +C  +     G+ +HA++ + G      +   L+ MY 
Sbjct: 182 LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYA 241

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G V  A +VF         SWNA+I G   NG  +  LE+F  M +  V PN +T   
Sbjct: 242 KCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITS 301

Query: 533 VLGACRHMGLVDE--GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           V  A    GL+ +    +  + +  +     +      ++ +    GM+ +A  +   M 
Sbjct: 302 VTVAS---GLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMD 358

Query: 591 MSPDVATWGALLGACKKHG 609
            + D  +W A++   +K+G
Sbjct: 359 -TRDAMSWTAMISGYEKNG 376



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 16/263 (6%)

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
            H Q ++ L L   ++     PDE   V++   C    A++ G    A+           
Sbjct: 74  SHGQLAQALWL---LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLR 130

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           LG  ++ M ++ G   +A  VF    E+ V SWN ++ G+   GL +++L+++  M  +G
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 523 VTPNEITFVGVLGACRHMGLVD-EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           V P+  TF  VL +C   G+ D    R  ++ +              ++ +  + G +  
Sbjct: 191 VRPDVYTFPCVLRSCG--GVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVA 248

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSNIH 639
           A ++ +SM +  D  +W A++    ++G+   G  +   ++  E+QP+     + ++++ 
Sbjct: 249 ARKVFDSMAVM-DCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPN----LMTITSVT 303

Query: 640 ASKGRWDDVL---EVRGMMVRRG 659
            + G   D+    E+ G+ V+RG
Sbjct: 304 VASGLLSDITFAKEMHGLAVKRG 326


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/799 (32%), Positives = 430/799 (53%), Gaps = 84/799 (10%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+L+++  +G + D +  S L+        +  M  +  IF  +   N    N +M    
Sbjct: 372  QMLTRIEKSGFLRDLYVGSALV---NGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLA 428

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLL----AQASALRLSVFEGKLIHDHVLKAGF- 162
            +++  ++A  ++K M  + V +++ +  +L     + S L+    +G+ +H ++ ++G  
Sbjct: 429  RQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLV 487

Query: 163  DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
            D+ + + N L+NMY  C  +  A  +F   P  D VSWNS+++G  + +  EEA   ++ 
Sbjct: 488  DARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHT 547

Query: 223  MPERNII---------------------------------------ASNSMIVLFGRKGN 243
            M    ++                                        SN+++ L+    +
Sbjct: 548  MKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDS 607

Query: 244  VAEACRLFKEMPKKDLVSWSALISCYEQNEM-YEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            + E  ++F +MP+ D VSW++ I    + E    +AL  F+ M+      + V  +++L+
Sbjct: 608  INECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILA 667

Query: 303  ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
            A ++ +V+  G  +HAL +K  +     ++NAL+  Y                       
Sbjct: 668  AVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYG---------------------- 705

Query: 363  WNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                     KC  +E    +F  M E+ D VSW++MISGY       + + L   M   G
Sbjct: 706  ---------KCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRG 756

Query: 422  IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
             + D  T  +V+SAC  +  L++G  +HA   +  L+ + ++G+ L+DMY K G +D A 
Sbjct: 757  QKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYAS 816

Query: 482  EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
              F     + + SWN++I G+A +G   K+L++F+ MK+ G +P+ +TFVGVL AC H+G
Sbjct: 817  RFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVG 876

Query: 542  LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            LVDEG++HF SM + + L P  +H+ CMVDLLGRAG +K+ E+ I++MPM P++  W  +
Sbjct: 877  LVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTV 936

Query: 602  LGA-CKKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            LGA C+ +G + E+G+R  + L+EL+P +   +VLLSN+HA+ G W+DV+E R  M +  
Sbjct: 937  LGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAA 996

Query: 660  VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
            V K  GCS +     +H F+AGD+THP+  +I   L E+  K++  GY P+T    +D++
Sbjct: 997  VKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLE 1056

Query: 720  QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
             E KE  L  HSEKLAIAF ++T     PIRIMKNLR+C DCHTA K+IS+   R+I++R
Sbjct: 1057 LENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILR 1115

Query: 780  DRHRFHHFKHGSCSCMDFW 798
            D +RFHHF  G CSC D+W
Sbjct: 1116 DSNRFHHFGGGMCSCGDYW 1134



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 157/682 (23%), Positives = 296/682 (43%), Gaps = 101/682 (14%)

Query: 20  AKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL-----------IADTFAASRL 68
           A  +FK  I+  +L  H     + +   Q  S  I  G+           ++D   ++ L
Sbjct: 225 ACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVL 284

Query: 69  IKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM----LN 124
           +   +D    I+ ++  ++F  ++  N   +N+++  Y +R     A  L+ +M    + 
Sbjct: 285 MSMYSDCSGSIDDAH--RVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVE 342

Query: 125 NNVGVDNYTYPLLAQASA----LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            N+  + YT   L  A+       L + E  L    + K+GF  D+YV + L+N +A  G
Sbjct: 343 LNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR--IEKSGFLRDLYVGSALVNGFARYG 400

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG- 239
            +  A+ +F +    + V+ N ++ G       EEA  ++ +M +   I S S++VL   
Sbjct: 401 LMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLST 460

Query: 240 -----------RKGN-------------------------------VAEACRLFKEMPKK 257
                      RKG                                +  AC +F+ MP K
Sbjct: 461 FTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D VSW+++IS  + NE +EEA+  F  M  + ++     V+S LS+C++L  +  G  +H
Sbjct: 521 DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIH 580

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
               K G++  +++ NAL+ +Y+    I   +K+F      D +SWNS I          
Sbjct: 581 GEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIG--------- 631

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            A A ++A +                     + L  F+EM   G RP+  T +++++A +
Sbjct: 632 -ALAKYEASV--------------------LQALKYFLEMMQAGWRPNRVTFINILAAVS 670

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF-HGTEEKGVSSWN 496
               L  G  IHA I K  +  ++ +   L+  Y K   +++   +F   +E +   SWN
Sbjct: 671 SFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWN 730

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           ++I G+  +G+  K++++   M + G   +  TF  VL AC  +  ++ G       ++ 
Sbjct: 731 SMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRA 790

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
             LE +      +VD+  + G +  A    E MP+  ++ +W +++    +HG  +   +
Sbjct: 791 C-LESDVVVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGHGQKALK 848

Query: 617 VGRKLVE--LQPDHDGFHVLLS 636
           +  ++ +    PDH  F  +LS
Sbjct: 849 IFTRMKQHGQSPDHVTFVGVLS 870



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 140/611 (22%), Positives = 266/611 (43%), Gaps = 98/611 (16%)

Query: 52  QMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
           Q+  TG   D F  + LI     +   +    + K+F  +   N   ++ ++  Y Q  +
Sbjct: 165 QLYKTGFTDDVFFCNTLINIYVRIGNLVS---ARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALR-------LSVFEGKLIHDHVLKAGFDS 164
           P +A  L+K ++++ +  +++     A  SALR         +  G  IH  + K    S
Sbjct: 222 PDEACSLFKGVISSGLLPNHF-----AVGSALRACQQCGSTGIKLGMQIHAFICKLPCVS 276

Query: 165 DVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           D+ ++N L++MY+ C G +  A ++FDE    + V+WNSI++ Y    +   A  +++ M
Sbjct: 277 DMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVM 336

Query: 224 ----------PE-----------------------------------RNIIASNSMIVLF 238
                     P                                    R++   ++++  F
Sbjct: 337 QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGF 396

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE--VV 296
            R G +  A  +FK+M  ++ V+ + L+    +    EEA  +F  M D   +  E  VV
Sbjct: 397 ARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVV 456

Query: 297 VVSVLSACANLTVVK-AGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDA 354
           ++S  +  +NL   K  G  VHA   + G ++  I++ NAL++MY  C  I  A  +F  
Sbjct: 457 LLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQL 516

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
             + D +SWNSM                               ISG   +++F E +S F
Sbjct: 517 MPSKDTVSWNSM-------------------------------ISGLDHNERFEEAVSCF 545

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             M+ +G+ P   +++S +S+C+ L  L  G+ IH    K GL ++  +   L+ +Y + 
Sbjct: 546 HTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAET 605

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFA-MNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
             ++   +VF    E    SWN+ I   A       ++L+ F EM ++G  PN +TF+ +
Sbjct: 606 DSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINI 665

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L A     ++  GH+  +++I ++ +  ++     ++   G+   +++ E +   M    
Sbjct: 666 LAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERR 724

Query: 594 DVATWGALLGA 604
           D  +W +++  
Sbjct: 725 DEVSWNSMISG 735



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 135/546 (24%), Positives = 219/546 (40%), Gaps = 147/546 (26%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+++   +H  + K GF  DV+  NTLIN+Y   G+L +ARKLFDE P  +LVSW+ +++
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           GY             N+MP+                    EAC LFK             
Sbjct: 215 GYTQ-----------NRMPD--------------------EACSLFK------------- 230

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL--TVVKAGTSVHALAVKI 323
                              +I   ++ +   V S L AC     T +K G  +HA   K+
Sbjct: 231 ------------------GVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKL 272

Query: 324 GIECYINLQNALIHMYSSC-GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
                + L N L+ MYS C G I  A ++FD     + ++WNS+IS Y + G    A  L
Sbjct: 273 PCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKL 332

Query: 383 FDAM----------------------------------------IEK-----DVVSWSTM 397
           F  M                                        IEK     D+   S +
Sbjct: 333 FSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSAL 392

Query: 398 ISGYAQHDQFSETLSLFMEM-----------------QHHG-------------IRPDEA 427
           ++G+A++        +F +M                 QH G             +  +  
Sbjct: 393 VNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE 452

Query: 428 TLVSVISACTHLVALDQGKW----IHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALE 482
           +LV ++S  T    L +GK     +HAY+ ++GL    I +G  L++MY K   +DNA  
Sbjct: 453 SLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACS 512

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF     K   SWN++I G   N   ++++  F  MK++G+ P+  + +  L +C  +G 
Sbjct: 513 VFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGW 572

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           +  G R  +    +  L+ +      ++ L      + E +++   MP   D  +W + +
Sbjct: 573 LTLG-RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFI 630

Query: 603 GACKKH 608
           GA  K+
Sbjct: 631 GALAKY 636


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/552 (40%), Positives = 337/552 (61%), Gaps = 6/552 (1%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF ++   +   +SALI  Y +N  +  ++ L+ +M+++ V        ++ S   N ++
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G+ +H  A   G    + + N +IHMY   G +  A K+FD   + D+++W  +I  
Sbjct: 128 ---GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA 184

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y + G ++ A  LF  +  KD+V+W++M++GY+Q+    + L  F +M+  G+  DE TL
Sbjct: 185 YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITL 244

Query: 430 VSVISACTHLVALDQGKWIH--AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           V  ISAC  L       WI   A   + G   N  +G+ LIDMY K G V+ A  VF G 
Sbjct: 245 VGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
           +E  V S++++I+GFA++G A  ++++F EM ++G+ PN +TFVG+  AC H G+V++G 
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQ 364

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           + F +M + + + P + HY CM DLLGRAG L++A +L+++MPM P+   WGALLGA   
Sbjct: 365 QLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHI 424

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG+ ++ E   R L EL+PD+ G ++LLS  +A   +WDDV  VR +M  + + K PGCS
Sbjct: 425 HGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCS 484

Query: 668 MIEA-NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
            +EA NGIIHEF AGD  HP+INEI   LD++ ++LK  GY P    V +DID E K   
Sbjct: 485 WVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCL 544

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLA+A+GL++    + I+IMKNLRIC DCH      S+   R+I+VRD  RFHH
Sbjct: 545 LVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHH 604

Query: 787 FKHGSCSCMDFW 798
           F +G+CSC +FW
Sbjct: 605 FLNGACSCNNFW 616



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 227/484 (46%), Gaps = 72/484 (14%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           + I+E+H   C +     Q+ + +    L   ++  + L++F T L      +Y   +F+
Sbjct: 14  VRIIESH---CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFS 70

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            + SPN F+++ ++RAY +      +I LY  MLNNNV   ++T+  L    +L  +   
Sbjct: 71  QVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSL 127

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G  +H H    GF +D+YV NT+I+MY   G L  ARK                      
Sbjct: 128 GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARK---------------------- 165

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                    ++++MP R+++    +IV + R G++  AC LF  +P KD+V+W+++++ Y
Sbjct: 166 ---------VFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGY 216

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA--VKIGIEC 327
            QN M ++AL  F  M +  V+ DE+ +V  +SACA L V      +  +A   + G   
Sbjct: 217 SQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGS 276

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            + + +ALI MYS CG +  A  +F     +++ S++SMI G                  
Sbjct: 277 NVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVG------------------ 318

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
                        +A H +    + LF EM  +GI+P+  T V + +AC+H   ++QG+ 
Sbjct: 319 -------------FAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQ 365

Query: 448 IHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMN 505
           +   +++  G+   +     + D+  + G ++ AL++      E     W AL+    ++
Sbjct: 366 LFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIH 425

Query: 506 GLAD 509
           G  D
Sbjct: 426 GNPD 429


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/558 (41%), Positives = 336/558 (60%), Gaps = 32/558 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  AC +F++M +     ++ ++  + ++   EEAL+ +  M +  V  D     ++L
Sbjct: 36  GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 95

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA L  V+ G  VHA  +K+G+E  + +QN+LI M                       
Sbjct: 96  KACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISM----------------------- 132

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                   Y KCG +    A+F+ M E+ V SWS +I+ +A    +S+ L L  +M + G
Sbjct: 133 --------YGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEG 184

Query: 422 I-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
             R +E+ LVSV+SACTHL ALD G+ +H ++ +N   +N I+ T+LI+MY+K G +   
Sbjct: 185 YWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKG 244

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           + +F    +K   S++ +I G AM+G   + L +F+EM + G+ P++I +VGVL AC H 
Sbjct: 245 MCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHA 304

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV EG + FN M  EH +EP  +HYGCMVDL+GRAG + EA ELI+SMPM P+   W +
Sbjct: 305 GLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRS 364

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL A K H + + GE   ++L +L       +V+LSN++A   RW+DV   R  M  +G+
Sbjct: 365 LLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGL 424

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            + PG S++E    +H F++ D  HPQ   +  ML +M  +LK EGY PDT +V  D+D+
Sbjct: 425 SQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDE 484

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK+  L  HS+KLAIA+ LI  S  +P+RI++NLR+CNDCHT  K IS  FDREI VRD
Sbjct: 485 EEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRD 544

Query: 781 RHRFHHFKHGSCSCMDFW 798
           RHRFHHFK G+CSC D+W
Sbjct: 545 RHRFHHFKDGACSCRDYW 562



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 215/453 (47%), Gaps = 57/453 (12%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           ++F Q  ++++  GL  D+F AS L+  +  L  +  M Y+  IF  ++ P  F FNTMM
Sbjct: 2   EEFKQSHARILKXGLFXDSFCASNLVA-TCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           R +++    ++A+  YK M    V  DN+TYP L +A A   +V EG  +H H+LK G +
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA------------------ 205
           +DV+V N+LI+MY  CG++     +F++     + SW++++                   
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 206 ---GYVNAD-----NVEEA--------------KFIYNKMPERNIIASNSMIVLFGRKGN 243
              GY  A+     +V  A               F+   +   N+I   S+I ++ + G 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           + +   LF++M KK+ +S+S +IS    +    E L +F  M++  +  D++V V VL+A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 304 CANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLI 361
           C++  +V+ G    + + ++ GIE  I     ++ +    G+I  A +L  +     + +
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360

Query: 362 SWNSMISGY-----LKCGSVEKARALF--DAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
            W S++S       L+ G +  A+ LF  D+    D V  S M   YAQ  ++ +     
Sbjct: 361 LWRSLLSASKVHNNLQAGEI-AAKQLFKLDSQKASDYVVLSNM---YAQAQRWEDVARTR 416

Query: 415 MEMQHHGI--RPDEATLVSVISACTHLVALDQG 445
             M   G+  RP   +LV V       V+ D G
Sbjct: 417 TNMFSKGLSQRPG-FSLVEVKRKMHRFVSQDAG 448


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 337/559 (60%), Gaps = 32/559 (5%)

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
           + +++ A  LF+ M + D+V ++++   Y +     E   LF+ +++  ++ D     S+
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA    ++ G  +H L++K+G++  + +   LI+MY+ C +                
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED---------------- 179

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                          V+ AR +FD ++E  VV ++ MI+GYA+ ++ +E LSLF EMQ  
Sbjct: 180 ---------------VDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK 224

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            ++P+E TL+SV+S+C  L +LD GKWIH Y +K+       + T LIDM+ K G +D+A
Sbjct: 225 YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           + +F     K   +W+A+I+ +A +G A+KS+ MF  M+   V P+EITF+G+L AC H 
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           G V+EG ++F+ M+ +  + P+ KHYG MVDLL  AG L++A E I+ +P+SP    W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL AC  H + ++ E+V  ++ EL   H G +V+LSN++A   +W+ V  +R +M  R  
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT-LEVAFDID 719
           VK+PGCS IE N ++HEF +GD       ++   LDEM K+LKL GY PDT + V  +++
Sbjct: 465 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMN 524

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            +EKE TL  HSEKLAI FGL+   P   IR++KNLR+C DCH AAK IS  F R++V R
Sbjct: 525 DQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXR 584

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHF+ G CSC DFW
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 195/447 (43%), Gaps = 95/447 (21%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + KC S ++  QI +  I +  I D    ++LI F T+      MSY+  +F  +  P+ 
Sbjct: 36  ISKCNSLRELMQIQAYAIKSH-IEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDI 94

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            IFN+M R Y +   P +   L+  +L + +  DNYT+P L +A A+  ++ EG+ +H  
Sbjct: 95  VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G D +VYV  TLINM                               Y   ++V+ A
Sbjct: 155 SMKLGLDDNVYVCPTLINM-------------------------------YTECEDVDSA 183

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
           + ++++                     + E C          +V ++A+I+ Y +     
Sbjct: 184 RXVFDR---------------------IVEPC----------VVCYNAMITGYARRNRPN 212

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EAL LF  M    +  +E+ ++SVLS+CA L  +  G  +H  A K     Y+ +  ALI
Sbjct: 213 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALI 272

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            M++ CG +  A  +F+     D  +W++MI  Y   G  EK+  +F+            
Sbjct: 273 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE------------ 320

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKN 455
                               M+   ++PDE T + +++AC+H   +++G K+    + K 
Sbjct: 321 -------------------RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKF 361

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALE 482
           G+  +     +++D+    G +++A E
Sbjct: 362 GIVPSIKHYGSMVDLLSXAGNLEDAYE 388


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 349/603 (57%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           ++SI+     + N+  A+ I++ +    +       NS+I ++ + G V++A  +F  +P
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +D+VSW+ LI+ Y QN+M  EAL L  +M+  R         S L A         G  
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HALAVK  ++  + + +AL+ MY+ C ++  A ++                        
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRV------------------------ 220

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
                  FD +  K+ VSW+ +I+G+A+      TL  F EMQ +G      T  SV SA
Sbjct: 221 -------FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSA 273

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              + AL+QG+W+HA++ K+G K+ + +  T++ MY K G + +A +VF   +++ + +W
Sbjct: 274 LARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTW 333

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N ++  FA  GL  +++  F E++K G+  N+ITF+ VL AC H GLV EG ++F+ M++
Sbjct: 334 NTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMK 392

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           ++ +EP   HY   VDLLGRAG+LKEA   +  MPM P  A WGALLGAC+ H + ++G+
Sbjct: 393 DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQ 452

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + EL P+  G  VLL NI+AS G+WDD   VR MM   GV K P CS +E    +
Sbjct: 453 YAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSV 512

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI  M +E+  ++K  GY P+T  V   I ++E+ET L  HSEK+A
Sbjct: 513 HMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIA 572

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           +AF LI +     IRIMKN+RIC DCH+A +++S  F REIVVRD +RFHHF +GSCSC 
Sbjct: 573 LAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCG 632

Query: 796 DFW 798
           D+W
Sbjct: 633 DYW 635



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 178/419 (42%), Gaps = 71/419 (16%)

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
           L+L   +      Y  +  A A   ++   + IH H+ ++    D ++ N+LI+MY  CG
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------P---------- 224
            +S AR +FD  P  D+VSW  ++ GY   D   EA  +   M      P          
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 225 -----------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                                  + ++   ++++ ++ R   +  A R+F  +  K+ VS
Sbjct: 172 AAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVS 231

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+ALI+ + +    E  L+ F  M  +          SV SA A +  ++ G  VHA  +
Sbjct: 232 WNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMI 291

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K G +    + N ++ MY+  G +  A K+FD     DL++WN+                
Sbjct: 292 KSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNT---------------- 335

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
                          M++ +AQ+    E ++ F E++ +GI+ ++ T +SV++AC+H   
Sbjct: 336 ---------------MLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGL 380

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL-EVFHGTEEKGVSSWNALI 499
           + +GK     ++   ++       + +D+  + G +  AL  VF    E   + W AL+
Sbjct: 381 VKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 439



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 133/289 (46%), Gaps = 39/289 (13%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +  ++  Y Q ++P +A+ L   ML        +T+    +A+        G+ +H   +
Sbjct: 131 WTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAV 190

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN------ 212
           K   D DVYV + L++MYA C  +  A ++FD     + VSWN+++AG+    +      
Sbjct: 191 KYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLM 250

Query: 213 -----------------------------VEEAKFIYNKM----PERNIIASNSMIVLFG 239
                                        +E+ ++++  M     +     +N+++ ++ 
Sbjct: 251 KFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYA 310

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A ++F  + ++DLV+W+ +++ + Q  + +EA+  F  +  + + ++++  +S
Sbjct: 311 KSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLS 370

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           VL+AC++  +VK G     +     +E  I+   + + +    G +  A
Sbjct: 371 VLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEA 419



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 29/252 (11%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P      S+I+AC     L   + IH+++ ++ L  +  L  +LI MY K G V +A 
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACR 538
            VF G   + V SW  LI G+A N +  ++L +  +M ++   P+  TF   L   GAC 
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
             G+ ++ H    ++  ++ L+ +      ++D+  R   +  A  + + +    +V +W
Sbjct: 178 GRGIGEQMH----ALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV-SW 232

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHAS--------KGRWDD 647
            AL+    + GD   GE    K  E+Q   +GF   H   S++ ++        +GRW  
Sbjct: 233 NALIAGFARKGD---GETTLMKFAEMQ--RNGFGATHFTYSSVFSALARIGALEQGRW-- 285

Query: 648 VLEVRGMMVRRG 659
              V   M++ G
Sbjct: 286 ---VHAHMIKSG 294



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 103/214 (48%), Gaps = 8/214 (3%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  + ++F +L+S N   +N ++  + ++   +  +  +  M  N  G  ++TY  +  
Sbjct: 213 QMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFS 272

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +G+ +H H++K+G     +V NT++ MYA  G +  ARK+FD     DLV+
Sbjct: 273 ALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVT 332

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP 255
           WN++L  +      +EA   + ++ +  I    I   S++      G V E  + F  M 
Sbjct: 333 WNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMK 392

Query: 256 ----KKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               + ++  + + +    +  + +EAL+    M
Sbjct: 393 DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKM 426


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 287/879 (32%), Positives = 441/879 (50%), Gaps = 144/879 (16%)

Query: 18  VNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL-- 75
           V A+P   P+  +S L +  Q   +F Q     + M+  G+  D FA   ++K +  +  
Sbjct: 42  VAAEPRL-PSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQD 100

Query: 76  -----------------LPFI-------------EMSYSFKIFAFLESPNGFIFNTMMRA 105
                            LP               ++  + ++F  + + +   +N+M+ A
Sbjct: 101 LNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINA 160

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA-SALRLSVFEGKLIHDHVLKAGFDS 164
             +    + A+ L++LML  NVG  ++T   +A A S L   +  GK +H  VL+ G D 
Sbjct: 161 ACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DW 219

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
             + NN L+ MYA  G +  A+ LFD     DLVSWN+I++     D  EEA    + M 
Sbjct: 220 RTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVML 279

Query: 225 ER----------NIIASNSMIVLFGRKGNV-----------------------------A 245
           +           +++ + S + + G    +                              
Sbjct: 280 QSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQP 339

Query: 246 EACRL-FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSA 303
           E  RL F  M ++ +  W+A+I+ Y +NE   EA+ LF+ M+ +  +  + V + SVL A
Sbjct: 340 EKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPA 399

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C           +H+  VK G E    +QNAL+ MYS                       
Sbjct: 400 CVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYS----------------------- 436

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ----- 418
                   + G +E AR++F +M  KD+VSW+TMI+GY    +  + L+L  +MQ     
Sbjct: 437 --------RMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAE 488

Query: 419 -------------HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                        +  ++P+  TL++V+  C  L AL +GK IHAY  K  L  +  +G+
Sbjct: 489 HRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGS 548

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG--- 522
            L+DMY K GC++ +  VF     + V +WN LI+ + M+G  +++L++F  M + G   
Sbjct: 549 ALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNN 608

Query: 523 --VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
             + PNE+T++ +  +  H G+VDEG   F +M  +H +EP S HY C+VDLLGR+G ++
Sbjct: 609 REIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIE 668

Query: 581 EAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
           EA  LI++MP +   V  W +LLGACK H + E+GE   + L  L P+   +    S + 
Sbjct: 669 EAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVLDYGTKQSML- 727

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
              GR          M  +GV K PGCS IE    +H+FLAGD +HPQ  E+   L+ ++
Sbjct: 728 ---GR---------KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLS 775

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            ++K EGY PDT  V  ++ +EEKET L  HSE+LAIAFGL+  SP   IR+ KNLR+CN
Sbjct: 776 LRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCN 835

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH A KFIS+  DREI++RD  RFHHF++G+CSC D+W
Sbjct: 836 DCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/646 (35%), Positives = 362/646 (56%), Gaps = 39/646 (6%)

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEA-KFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           ++PVL L     +L  Y +   ++     ++N     N      ++  +  +G    A  
Sbjct: 29  QNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARN 88

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F  +P+++++ ++ +I  Y  N +Y++AL++F +M+      D      VL AC+    
Sbjct: 89  VFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDN 148

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  +H    K+G++  + + N LI +Y  CG +  A  + D   + D++SWNSM++G
Sbjct: 149 LRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAG 208

Query: 370 YLK----------CGSVEKARALFDA---------------------------MIEKDVV 392
           Y +          C  ++  R   DA                           + +K +V
Sbjct: 209 YAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLV 268

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MIS Y ++    +++ L+++M    + PD  T  SV+ AC  L AL  G+ IH Y+
Sbjct: 269 SWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYV 328

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L  N +L  +LIDMY + GC+++A  VF   + + V+SW +LI  + M G    ++
Sbjct: 329 ERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAV 388

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F+EM+ SG +P+ I FV +L AC H GL++EG  +F  M  ++++ P  +H+ C+VDL
Sbjct: 389 ALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDL 448

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGR+G + EA  +I+ MPM P+   WGALL +C+ + + ++G     KL++L P+  G++
Sbjct: 449 LGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYY 508

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLLSNI+A  GRW +V  +R +M RR + K+PG S +E N  +H FLAGD  HPQ  EI 
Sbjct: 509 VLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIY 568

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L  +  K+K  GY P T     D+++E+KE  L  HSEKLAI F ++  +  +PIRI 
Sbjct: 569 EELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILN-TQESPIRIT 627

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCH AAK IS+   REIV+RD +RFHHFK G CSC D+W
Sbjct: 628 KNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  189 bits (480), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 232/504 (46%), Gaps = 78/504 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   +N M+R+Y+  ++   A+ +++ M++     D+YTYP + +A +   +
Sbjct: 89  VFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDN 148

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G  +H  V K G D +++V N LI +Y  CG L  AR + DE    D+VSWNS++AG
Sbjct: 149 LRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAG 208

Query: 207 YVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           Y      ++A  I  +M      P+   +AS    V      NV     +F  + KK LV
Sbjct: 209 YAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLV 268

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+ +IS Y +N M  +++ L++ M    V  D +   SVL AC +L+ +  G  +H   
Sbjct: 269 SWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYV 328

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            +  +   + L+N+LI MY+                               +CG +E A+
Sbjct: 329 ERKKLCPNMLLENSLIDMYA-------------------------------RCGCLEDAK 357

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +FD M  +DV SW+++IS Y    Q    ++LF EMQ+ G  PD    V+++SAC+H  
Sbjct: 358 RVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSG 417

Query: 441 ALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
            L++GK+    +  +  KI  I+     L+D+  + G VD A  +               
Sbjct: 418 LLNEGKFYFKQM-TDDYKITPIIEHFACLVDLLGRSGRVDEAYNI--------------- 461

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
                              +K+  + PNE  +  +L +CR    +D G    + ++Q   
Sbjct: 462 -------------------IKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQ--- 499

Query: 559 LEP-NSKHYGCMVDLLGRAGMLKE 581
           L P  S +Y  + ++  +AG   E
Sbjct: 500 LAPEESGYYVLLSNIYAKAGRWTE 523



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 41/226 (18%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y  ++F  LE  +   +N M+  Y++ ++P +++ LY  M    V  D  T   + +A  
Sbjct: 254 YVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACG 313

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++  G+ IH++V +     ++ + N+LI+MYA CG L  A+++FD     D+ SW S
Sbjct: 314 DLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTS 373

Query: 203 ILAGY--------------------VNADNV---------------EEAKFIYNKMPERN 227
           +++ Y                     + D++                E KF + +M +  
Sbjct: 374 LISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDY 433

Query: 228 IIAS-----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            I         ++ L GR G V EA  + K+MP K +   W AL+S
Sbjct: 434 KITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLS 479


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/637 (35%), Positives = 353/637 (55%), Gaps = 40/637 (6%)

Query: 201 NSILAGYVNADNVEE--AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           N IL  Y + + +++   K + ++    N      ++ ++   G    A  +F E+  K+
Sbjct: 25  NRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKN 84

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           +V ++ +I  Y  N +Y++AL+++  M     + D      VL A +    +  G  +H 
Sbjct: 85  VVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHG 144

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             +KIG++  + + N LI MY  C  +  A+++ D     D++SWNSM+S Y + G    
Sbjct: 145 AVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFND 204

Query: 379 A-------------------------------------RALFDAMIEKDVVSWSTMISGY 401
           A                                     + +F  + +K V+SW+ MI+ Y
Sbjct: 205 ALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMY 264

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
             +    E + L+ +M+ +G+ PD  ++VSV+ A   L AL  G+ +H +  +  L  N 
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNL 324

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           +L   LIDMY K GC+ +A  VF+  + + V SW ++I  +   G    ++ +F+EM+ S
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ P+ I FV VL AC H GL+D+G  +FN ++ E  + P  +H+ C+VDLLGRAG + E
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDGRYYFN-LMAECGITPKLEHFACVVDLLGRAGKIDE 443

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A   I  MP+ PD   WG LL AC+ + +  +G     KL+ L P+H G++VLLSNI+A 
Sbjct: 444 AYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAK 503

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
            GRW DV  +R +M R+G+ K+PG S +E N  +H FLAGD +HPQ  +I   LD +  K
Sbjct: 504 AGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGK 563

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           +K  GY P+T     D+++E+KE  L  HSEKLA+AF +I   P  PIR+ KNLR+C DC
Sbjct: 564 MKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDC 623

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H AAK IS+  +REI++RD HRFHHF+ G CSC D+W
Sbjct: 624 HVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN-----SMISGYLKCGSVEKARALFD 384
           +L N ++  Y    +I T +KL     N   + WN      ++  Y  CG    AR +FD
Sbjct: 22  DLCNRILDQYP---DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFD 78

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            + +K+VV ++ MI  Y  +  + + L ++  M   G  PD  T   V+ A +   +L  
Sbjct: 79  EITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWV 138

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  IH  + K GL +N  +G  LI MY K   +  A +V      + V SWN+++  +A 
Sbjct: 139 GLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQ 198

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           NG  + +LE+  EM+   + PN+ T   +L A      V          ++E  L+   K
Sbjct: 199 NGRFNDALELCREMEALNLKPNDCTMASLLPA------VTNTTSDNVLYVKEMFLKLTKK 252

Query: 565 ---HYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGALLGACKKHGDHEMGERV 617
               +  M+ +     M KEA  L   +E+  + PDV +  ++L A        +G RV
Sbjct: 253 SVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 48/229 (20%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT----YPLLA 138
           Y  ++F  L   +   +N M+  Y+  ++P++A+ LY  M  N V  D  +     P   
Sbjct: 241 YVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYG 300

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
             SAL L    G+ +H    +     ++ + N LI+MYA CG L  AR +F++    D+V
Sbjct: 301 DLSALSL----GRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVV 356

Query: 199 SWNSILAGY--------------------VNADNV---------------EEAKFIYNKM 223
           SW SI++ Y                    +N D++               ++ ++ +N M
Sbjct: 357 SWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLM 416

Query: 224 PERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            E  I         ++ L GR G + EA    ++MP + D   W  L+S
Sbjct: 417 AECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLS 465


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/613 (39%), Positives = 363/613 (59%), Gaps = 9/613 (1%)

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYN---KMPERN---IIASNSMIVLFGRKGNVAEAC 248
           LD V + +++     A+ +  A+ +++    +P  N      +N +I ++G+ G +  A 
Sbjct: 58  LDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYAR 117

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            LF+ MP +++ +W+  ++ +  N  + EALV F  M       D V    +L+A A + 
Sbjct: 118 ELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMG 177

Query: 309 V--VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              +  G  +H  A   G+   + +  A+I MY  CG +  A   F+     + ++WN+M
Sbjct: 178 AAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAM 237

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPD 425
           ++ Y   G   +A  LF  M + D V W+ MI+ YAQH +  + L L+  M     + P 
Sbjct: 238 MTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 297

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           + T V+VI  C  L AL QG+ IHA +R      N ++   L+ MY K GC+D AL+VFH
Sbjct: 298 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 357

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             + K   SWN +I  +A +G +D++L ++ EM   GV P E+TFVG+L AC H GLV +
Sbjct: 358 SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 417

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F  M  +HR++P+  H+GC++DLLGR G L EAE +++SMP+  +   W +LLGAC
Sbjct: 418 GLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 477

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           K HGD + G R   ++V+  P   G +VLLSNI+A+ GRW DV ++R +M  RGV K PG
Sbjct: 478 KTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPG 537

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S IE   ++HEF++GD +HPQ  EI   L +M +++K  GY PDT  V  D+++EEKE 
Sbjct: 538 KSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKED 597

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HSEKLAI +G + +   + +RI+KNLR+C DCHTA KF+SR   R+IVVRD  RFH
Sbjct: 598 LLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFH 657

Query: 786 HFKHGSCSCMDFW 798
            F++GSCSC D+W
Sbjct: 658 LFENGSCSCRDYW 670



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 207/518 (39%), Gaps = 110/518 (21%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP--LL 137
            + Y+ ++F  + S N   +   M A+       +A+  ++ M  +    D  T+   L 
Sbjct: 112 RLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILA 171

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A A     ++ +G+ IH +   +G   +V V   +I+MY  CG L  AR  F+E    + 
Sbjct: 172 AIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNS 231

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
           V+WN+++  Y       EA  ++ +M + + +  N+MI  + + G   +A  L++ M   
Sbjct: 232 VTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSM--- 288

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
                      ++  ++  +                +   V+V+  CA L+ +K G ++H
Sbjct: 289 -----------HDTTDLAPK----------------QGTFVTVIDVCAELSALKQGRAIH 321

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           A       +  + + NAL+HMY  CG +  A  +F +    D ISWN++I          
Sbjct: 322 ARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTII---------- 371

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
                                S YA H    + L L+ EM   G++P E T V ++SAC+
Sbjct: 372 ---------------------SSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS 410

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-----KGV 492
           H                                    G V + L+ F+  ++       V
Sbjct: 411 H-----------------------------------GGLVADGLDYFYRMQDDHRIKPSV 435

Query: 493 SSWNALIIGFAMNG-LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             +  +I      G LA+  L     +K   +  N + ++ +LGAC+  G +  G R  +
Sbjct: 436 PHFGCIIDLLGRGGRLAEAEL----VLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAAD 491

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            ++   R+   S  Y  + ++   AG  K+ E++ + M
Sbjct: 492 QVVD--RVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIM 527


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/690 (35%), Positives = 376/690 (54%), Gaps = 70/690 (10%)

Query: 149 EGKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG- 206
            G+L+H   VL     +  ++ N LI MY+ C DL++A +LF   P  + VSW ++++G 
Sbjct: 188 RGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGL 247

Query: 207 --------------YVNADNVEEAKFIYNKMPE-----------RNIIASNS-------- 233
                          +    V   +F  +               R+  AS S        
Sbjct: 248 SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELF 307

Query: 234 ----MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DH 288
               +  ++ + G ++EACR+F +MP+KD V+W+A+I  Y +N   E A++ F +M  + 
Sbjct: 308 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 367

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  D+ V  SVLSA   L       S+H    K G E  + ++NALI MY+   ++ +A
Sbjct: 368 LVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESA 427

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            ++      +D   WN                          VVS ++MI GY + D   
Sbjct: 428 SRVL----KIDPGGWN--------------------------VVSGTSMIDGYIETDCVE 457

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E L +++E++  G+ P+E T  S+I  C     L+QG  +HA + K  L  +S +G+TL+
Sbjct: 458 EALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLV 517

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K G +  ++++F+  E +   +WNA+I  FA +G   ++++ F  M  SG+ PN I
Sbjct: 518 DMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHI 577

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
            FV +L AC H GLVDEG ++F SM + H +EP  +HY C++D  GRAG L EA + I  
Sbjct: 578 AFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE 637

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+ P+   W +LLGAC+  G  E+GE   + L++L+P + G HV LS I+AS G+W+DV
Sbjct: 638 MPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDV 697

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR +M    + K+PG S +++N   H F + D +HPQ  +I   L+E+  ++K EGY 
Sbjct: 698 KAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYI 757

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT  +  +++   KE  L  HSE++A+AF LI++    PI + KNLRIC DCHTA KFI
Sbjct: 758 PDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFI 817

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +   R+I+VRD  RFHHF +G CSC D+W
Sbjct: 818 CKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 134/634 (21%), Positives = 262/634 (41%), Gaps = 124/634 (19%)

Query: 2   TLATKLAHLSSTIKSSVNAKPIFKP-------TINLSILETHLQKCQSFKQFTQILSQMI 54
           TLA    H   T+      + +++P       T++L+ L     +    ++   + ++++
Sbjct: 138 TLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLV 197

Query: 55  LTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           L+G  A  TF A+ LI   +      +++ + ++FA +   N   + T++    Q  +  
Sbjct: 198 LSGAAAASTFLANHLITMYSHC---ADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHA 254

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
            A+  +  M    V    +     A+A+A   +    +         GFD++++V + L 
Sbjct: 255 DALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASA-SVGFDTELFVASNLA 313

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-- 231
           +MY+ CG LS A ++FD+ P  D V+W +++ GY    ++E A   +  M    ++ +  
Sbjct: 314 DMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQ 373

Query: 232 --------------------------------------NSMIVLFGRKGNVAEACRLFKE 253
                                                 N++I ++ +  +V  A R+ K 
Sbjct: 374 HVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKI 433

Query: 254 MPKK-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            P   ++VS +++I  Y + +  EEALV+++ +    V  +E    S++  CA   +++ 
Sbjct: 434 DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQ 493

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +HA  +K  +     + + L+ MY  CG I+ + +LF+       I+WN+       
Sbjct: 494 GAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNA------- 546

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
                                   +I+ +AQH    E +  F  M + GIRP+    VS+
Sbjct: 547 ------------------------VINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSL 582

Query: 433 ISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++AC+H   +D+G K+ ++    +G++      + +ID Y + G +D A           
Sbjct: 583 LTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEA----------- 631

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
                                +  SEM    + PN   +  +LGACR  G  + G     
Sbjct: 632 --------------------YKFISEMP---IKPNAYGWCSLLGACRMRGSKELGEVAAQ 668

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +++   +LEP +   G  V L G    L + E++
Sbjct: 669 NLM---KLEPGNT--GIHVSLSGIYASLGQWEDV 697



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 152/351 (43%), Gaps = 20/351 (5%)

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           AG +    +  A+ + +     +   +N +I ++    ++A A RLF  MP+++ VSW+ 
Sbjct: 33  AGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTT 92

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA---LAV 321
           L+S   QN M+ +AL  F  M    V    ++  +            A +  H+   L V
Sbjct: 93  LVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMV 152

Query: 322 KI-GIECYINLQNA---LIHMYS---SC--------GEITTAEKLFDAGHNLDLISWNSM 366
           K  G   +     A    +H+ S   SC        G +  A  +            N +
Sbjct: 153 KYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHL 212

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+ Y  C  +  A  LF AM  ++ VSW+T++SG +Q+   ++ L+ F  M+  G+ P  
Sbjct: 213 ITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTR 272

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L S   A   L A  + +   A     G      + + L DMY K G +  A  VF  
Sbjct: 273 FALSSAARAAAALGAPLRARSCTASA-SVGFDTELFVASNLADMYSKCGLLSEACRVFDQ 331

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGA 536
             +K   +W A+I G+A NG  + ++  F +MK+ G V  ++  F  VL A
Sbjct: 332 MPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 382



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 150/377 (39%), Gaps = 28/377 (7%)

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIHMYSSCGEITTAEKLFD 353
           V + S+L +C     ++ G  +HA  V  G       L N LI MYS C ++ +A +LF 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 354 AGHNLDLISWNSMISG---------------YLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           A    + +SW +++SG                ++   V   R +++      +    T+ 
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLA 140

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEAT---LVSVISACTHLVALDQGKWIHAYIRKN 455
           + +  H   +  +  + +       P  AT   L S++ +C     L +G+ +HA +  +
Sbjct: 141 ASHC-HSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLS 199

Query: 456 GLKINS-ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           G    S  L   LI MY     + +AL +F     +   SW  L+ G + N +   +L  
Sbjct: 200 GAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAA 259

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY--GCMVDL 572
           F+ M+++GV P          A   +G          S      +  +++ +    + D+
Sbjct: 260 FAAMRRAGVAPTRFALSSAARAAAALGAPLR----ARSCTASASVGFDTELFVASNLADM 315

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
             + G+L EA  + + MP   D   W A++    K+G  E      R +          H
Sbjct: 316 YSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 374

Query: 633 VLLSNIHASKGRWDDVL 649
           V  S + AS G  D  L
Sbjct: 375 VFCSVLSASGGLKDGWL 391


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/740 (32%), Positives = 399/740 (53%), Gaps = 71/740 (9%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++  +M  Y +    ++ + L++ M    V  D YT   + +  A   S+ +G+++H  +
Sbjct: 163 VWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLL 222

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG----------- 206
            K GF S   V N L+  YA       A  +FD  P  D++SWNS+++G           
Sbjct: 223 EKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAI 282

Query: 207 ------YVNADNVEEA------------------KFIYNKMPERNIIASNSMI-VLFGRK 241
                 ++  + ++ A                  + ++    +   I+  S+  VL    
Sbjct: 283 ELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMY 342

Query: 242 GNVAE---ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            N ++     ++F+ M +K++VSW+A+I+ Y +  +Y++   LF  M       D   + 
Sbjct: 343 SNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAIT 402

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           S L A A   ++K G SVH  A++ G+E  + + NAL+ MY                   
Sbjct: 403 SALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMY------------------- 443

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                       +KCG++E+A+ +FD ++ KD++SW+T+I GY++++  +E  SLF EM 
Sbjct: 444 ------------VKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
              +RP+  T+  ++ A   L +L++G+ +HAY  + G   +  +   LIDMY+K G + 
Sbjct: 492 LQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALL 550

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A  +F     K + SW  ++ G+ M+G    ++ +F +M+ SG+ P+  +F  +L AC 
Sbjct: 551 LARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H GL DEG R F++M +EH++EP  KHY CMVDLL   G LKEA E I+SMP+ PD + W
Sbjct: 611 HSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
            +LL  C+ H + ++ E V  ++ EL+P++ G++VLL+NI+A   RW+ V +++  +  R
Sbjct: 671 VSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGR 730

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
           G+ +  GCS IEA G +H F+A +R HPQ   I   L+E+AK+++ EG+ P         
Sbjct: 731 GLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGA 790

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           D       L  HS KLA+AFG++ +S    IR+ KN R+C+ CH AAKFIS+   REI++
Sbjct: 791 DNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIIL 850

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RD +RFHHF+ G CSC  +W
Sbjct: 851 RDSNRFHHFEQGRCSCRGYW 870



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 149/565 (26%), Positives = 244/565 (43%), Gaps = 108/565 (19%)

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN---NTLINMYAVCGDLSA 184
           GVD+ +Y  + Q  +   S+  GK  H  V  +    D   N     L+ MY  CGDL  
Sbjct: 88  GVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLEN 147

Query: 185 ARKLFDESP-VLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIA------- 230
           AR++FDE P V D+  W ++++GY  A ++ E   ++ KM      P+   I+       
Sbjct: 148 ARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIA 207

Query: 231 --------------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                      N+++  + +     +A  +F  MP +D++SW++
Sbjct: 208 GLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNS 267

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS    N +Y++A+ LF+ M      +D   ++SVL ACA L ++  G  VH  +VK G
Sbjct: 268 MISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTG 327

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
                +L N L+ MYS+C +  +  K+F      +++SW +MI+ Y + G       L+D
Sbjct: 328 FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAG-------LYD 380

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                                   +   LF EM   G RPD   + S + A      L  
Sbjct: 381 ------------------------KVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKH 416

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK +H Y  +NG++    +   L++MY+K G ++ A  +F G   K + SWN LI G++ 
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSR 476

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE---- 560
           N LA+++  +F+EM    + PN +T   +L A   +  ++ G       ++   LE    
Sbjct: 477 NNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV 535

Query: 561 --------------------------PNSKHYGCMVDLLGRAGMLKEAEELIESMPMS-- 592
                                      N   +  MV   G  G  ++A  L E M +S  
Sbjct: 536 ANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGI 595

Query: 593 -PDVATWGALLGACKKHGDHEMGER 616
            PD A++ A+L AC   G  + G R
Sbjct: 596 APDAASFSAILYACSHSGLRDEGWR 620



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/445 (19%), Positives = 187/445 (42%), Gaps = 57/445 (12%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + TG I+ T  A+ L+   ++   +   +   KIF  +   N   +  M+ +Y +  +  
Sbjct: 324 VKTGFISQTSLANVLLDMYSNCSDWRSTN---KIFRNMVQKNVVSWTAMITSYTRAGLYD 380

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +   L++ M       D +       A A    +  GK +H + ++ G +  + V N L+
Sbjct: 381 KVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALM 440

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---------- 223
            MY  CG++  A+ +FD     D++SWN+++ GY   +   EA  ++ +M          
Sbjct: 441 EMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVT 500

Query: 224 -----PERNIIAS-----------------------NSMIVLFGRKGNVAEACRLFKEMP 255
                P    ++S                       N++I ++ + G +  A RLF  + 
Sbjct: 501 MTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLS 560

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            K+L+SW+ +++ Y  +    +A+ LF  M    +  D     ++L AC++  +   G  
Sbjct: 561 NKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWR 620

Query: 316 -VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKC 373
              A+  +  IE  +     ++ +  + G +  A +  D+     D   W S++ G    
Sbjct: 621 FFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIH 680

Query: 374 GSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            +V+ A  + + + E   ++   +  + + YA+ +++     L  ++   G+R +     
Sbjct: 681 RNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLREN----- 735

Query: 431 SVISACTHLVALDQGKWIHAYIRKN 455
              + C+ + A  +GK +H +I  N
Sbjct: 736 ---TGCSWIEA--KGK-VHVFIADN 754


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 354/623 (56%), Gaps = 44/623 (7%)

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADN---VEEAKFIYNKMPERNIIASNSMIVL 237
           DL+ A + F  + +    ++N +LAGY  A     + +A+ +++ +P  + ++ N+++  
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
               G++  A R+F  MP +D+ SW+ ++S   +N   EEA  +F  M     +      
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVS----- 136

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGH 356
                                              NA++   +S G++  AE LF +A  
Sbjct: 137 ----------------------------------WNAMVAARASSGDMGAAENLFRNAPE 162

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             D I W +M+SGY+  G+V+KA   F AM  +++VSW+ +++GY ++ +  + L +F  
Sbjct: 163 KTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKT 222

Query: 417 MQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           M    I +P+ +TL SV+  C++L AL  G+ +H +  K  L  +  +GT+L+ MY K G
Sbjct: 223 MVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCG 282

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +D+A ++F     K + +WNA+I G+A +G   K++++F +MK  GV P+ IT + VL 
Sbjct: 283 DLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLT 342

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GL D G + F +M + + +EP   HY CMVDLL RAG+L+ A  +I SMP  P  
Sbjct: 343 ACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHP 402

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           + +G LL AC+ + + E  E   RKL+E  P + G +V L+NI+A   RWDDV  VR  M
Sbjct: 403 SAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWM 462

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
               VVK PG S +E  G+ HEF + DR HPQ++ I + LD + K +K  GY+PD     
Sbjct: 463 KDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFAL 522

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            D+++  K   L RHSEKLAIAFGLI+ SP   +RI KNLRIC DCH AAK IS+  DRE
Sbjct: 523 HDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDRE 582

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I++RD  RFHHF+ G CSC D+W
Sbjct: 583 IILRDTTRFHHFRGGHCSCGDYW 605



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 153/321 (47%), Gaps = 68/321 (21%)

Query: 162 FDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           FDS    D    NTL++ +  CGD+  A ++F   PV D+ SWN++++G      +EEA+
Sbjct: 64  FDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAE 123

Query: 218 FIYNKMPERNIIASNSMIVL--------------------------------FGRKGNVA 245
            ++  MP RN ++ N+M+                                  +   GNV 
Sbjct: 124 AMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQ 183

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSAC 304
           +A   F+ MP ++LVSW+A+++ Y +N    +AL +F  M+ D  V  +   + SVL  C
Sbjct: 184 KAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           +NL+ +  G  VH   +K+ +   I +  +L+ MY  CG++  A KLFD  H  D+++WN
Sbjct: 244 SNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWN 303

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +MISGY + G   KA  LF+                               +M+  G+ P
Sbjct: 304 AMISGYAQHGGGRKAIKLFE-------------------------------KMKDEGVVP 332

Query: 425 DEATLVSVISACTHLVALDQG 445
           D  TL++V++AC H    D G
Sbjct: 333 DWITLLAVLTACIHTGLCDFG 353



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 58/291 (19%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           ++++F+ +   +   +NTM+    +    ++A  +++ M   N    ++   + A+AS+ 
Sbjct: 91  AWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV--SWNAMVAARASSG 148

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            +   E     +    A   +D  +   +++ Y   G++  A + F   PV +LVSWN++
Sbjct: 149 DMGAAE-----NLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAV 203

Query: 204 LAGYVNADNVEEAKFIYNKMPE-------------------------------------- 225
           +AGYV      +A  ++  M E                                      
Sbjct: 204 VAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLP 263

Query: 226 --RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
             R+I    S++ ++ + G++ +AC+LF EM  KD+V+W+A+IS Y Q+    +A+ LF 
Sbjct: 264 LGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFE 323

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            M D  V+ D + +++VL+AC           +H      GI+C+  +Q A
Sbjct: 324 KMKDEGVVPDWITLLAVLTAC-----------IHTGLCDFGIQCFETMQEA 363


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/586 (37%), Positives = 329/586 (56%), Gaps = 38/586 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F E+  K++V ++ +I  Y  N +Y++AL++F  M +     D      VL AC+    
Sbjct: 93  IFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGN 152

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           +  G  +H   VK+G++  + + N L+ MY  C  +  A ++ D     D++SWNSM++G
Sbjct: 153 LWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAG 212

Query: 370 YLK-------------------------------------CGSVEKARALFDAMIEKDVV 392
           Y +                                     C +V   + +F  + EK ++
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLI 272

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ MI+ Y  +   +E + L+++MQ HG+ PD  ++ SV+ AC  L A   G+ IH Y+
Sbjct: 273 SWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYV 332

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +  L+ N +L   LIDMY K GC+  A  VF     + V SW ++I  + M+G    ++
Sbjct: 333 ERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAV 392

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +F +M+ SG TP+ I FV VL AC H GLVDEG   FN ++ E+ + P  +HY CMVDL
Sbjct: 393 ALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFN-LMAEYGITPGIEHYNCMVDL 451

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGRAG + EA  L   MPM P+   WG+LL AC+ +    +       L +L P+  G++
Sbjct: 452 LGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYY 511

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           VLLSNI+A  GRW DV  VR +M  +G+ KIPG S +E N  ++ FLAGD++H Q  EI 
Sbjct: 512 VLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIY 571

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             L  +  ++K  GY P+T     D+++E+KE  L  HSEKLAI F ++   P + IRI 
Sbjct: 572 KALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRIT 631

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KN+R+C DCH A K IS+  +REI++RD HRFHHF+ G CSC D+W
Sbjct: 632 KNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 204/416 (49%), Gaps = 40/416 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E  Y+  IF  +   N   FN M+R+Y+   + Q A+ ++K M N     DNYTYP + +
Sbjct: 86  EPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLK 145

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A ++  +++ G  IH  V+K G D ++Y+ N L++MY  C  L AAR++ DE P  D+VS
Sbjct: 146 ACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVS 205

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           WNS++AGY       +A  +  +M      P+   + S    V      NV     +F +
Sbjct: 206 WNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVK 265

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           + +K L+SW+ +I+ Y  N M  EA+ L++ M  H V  D V + SVL AC +L+    G
Sbjct: 266 LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    +  +   + L+NALI MY+ CG +  A  +FD     D++SW SMIS Y   
Sbjct: 326 RRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMS 385

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G                               Q  + ++LF +M+  G  PD    VSV+
Sbjct: 386 G-------------------------------QGKDAVALFKKMRDSGFTPDWIAFVSVL 414

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           +AC+H   +D+G++    + + G+         ++D+  + G +D   E +H T +
Sbjct: 415 AACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKID---EAYHLTRQ 467



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 23/320 (7%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y  CG     R +FD + +K+VV ++ MI  Y  +  + + L +F  M + G  PD
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ AC+    L  G  IH  + K GL +N  +G  L+ MY K   +D A  V  
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + + SWN+++ G+A NG  + +L++  EM+   + P+  T   +L A  +     +
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSC--D 254

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGALL 602
              +   M  + + E +   +  M+ +     M  EA +L   M    + PD  +  ++L
Sbjct: 255 NVLYVKDMFVKLK-EKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVL 313

Query: 603 GACKKHGDHEMGER----VGRKLVELQPDHDGFHVLLSN----IHASKGRWDDVLEVRGM 654
            AC       +G R    V RK  +L+P+     +LL N    ++A  G   +   V   
Sbjct: 314 PACGDLSAAVLGRRIHEYVERK--KLRPN-----LLLENALIDMYAKCGCLKEARAVFDQ 366

Query: 655 MVRRGVVKIPGCSMIEANGI 674
           M+ R VV     SMI A G+
Sbjct: 367 MMFRDVVS--WTSMISAYGM 384



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 40/225 (17%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y   +F  L+  +   +N M+  Y+   +P +A+ LY  M  + V  D  +   +  A  
Sbjct: 258 YVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACG 317

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +   G+ IH++V +     ++ + N LI+MYA CG L  AR +FD+    D+VSW S
Sbjct: 318 DLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTS 377

Query: 203 ILAGY-----------------------------------VNADNVEEAKFIYNKMPERN 227
           +++ Y                                    +A  V+E ++ +N M E  
Sbjct: 378 MISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYG 437

Query: 228 IIAS----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
           I       N M+ L GR G + EA  L ++MP + +   W +L+S
Sbjct: 438 ITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLS 482



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 19/261 (7%)

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L  N  LG  L+  Y   G       +F    +K V  +N +I  +  NGL   +L +F 
Sbjct: 67  LHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFK 126

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            M   G  P+  T+  VL AC   G +  G +   ++++   L+ N      +V + G+ 
Sbjct: 127 TMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLG-LDMNLYIGNGLVSMYGKC 185

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDGFHVL 634
             L  A  +++ MP   D+ +W +++    ++G      ++ R++  ++L+PD      L
Sbjct: 186 KWLDAARRVLDEMP-GRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSL 244

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           L  +  +    D+VL V+ M      VK+   S+I  N +I  ++         N + N 
Sbjct: 245 LPAV--TNTSCDNVLYVKDMF-----VKLKEKSLISWNVMIAVYVN--------NAMPNE 289

Query: 695 LDEMAKKLKLEGYAPDTLEVA 715
             ++  ++++ G  PD + ++
Sbjct: 290 AVDLYLQMQVHGVEPDAVSIS 310


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 329/594 (55%), Gaps = 42/594 (7%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           +VA A ++F E+P+++++  + +I  Y  N  Y E + +F  M    V  D      VL 
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           AC+    +  G  +H  A K+G+   + + N L+ MY  CG ++ A  + D     D++S
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 208

Query: 363 WNSMISGYLK----------CGSVEKARALFDA--------------------------- 385
           WNS++ GY +          C  +E  +   DA                           
Sbjct: 209 WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFK 268

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M +K +VSW+ MI  Y ++    E + L+  M+  G  PD  ++ SV+ AC    AL  G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           K IH YI +  L  N +L   LIDMY K GC++ A +VF   + + V SW A+I  +  +
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G    ++ +FS+++ SG+ P+ I FV  L AC H GL++EG   F  M   +++ P  +H
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
             CMVDLLGRAG +KEA   I+ M M P+   WGALLGAC+ H D ++G     KL +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+  G++VLLSNI+A  GRW++V  +R +M  +G+ K PG S +E N IIH FL GDR+H
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQ +EI   LD + KK+K  GY PD+     D+++E+KET L  HSEKLAI F L+    
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKE 628

Query: 746 P-----NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
                 N IRI KNLRIC DCH AAK IS+   REI++RD +RFH F+ G CSC
Sbjct: 629 EEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 245/563 (43%), Gaps = 77/563 (13%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           P   + +L   L      +    + S++IL  L  ++    +L++    L    +++ + 
Sbjct: 38  PQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK---DVASAR 94

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N  I N M+R+Y+      + + ++  M   NV  D+YT+P + +A +   
Sbjct: 95  KVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSG 154

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  G+ IH    K G  S ++V N L++MY  CG LS AR + DE    D+VSWNS++ 
Sbjct: 155 TIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVV 214

Query: 206 GYVNADNVEEAKFIYNKMPERNI------IASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           GY      ++A  +  +M    I      +AS    V      NV     +F +M KK L
Sbjct: 215 GYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL 274

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           VSW+ +I  Y +N M  EA+ L+  M       D V + SVL AC + + +  G  +H  
Sbjct: 275 VSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 334

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             +  +   + L+NALI MY+ CG +  A  +F+   + D++SW +MIS Y   G     
Sbjct: 335 IERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG----- 389

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                                     +  + ++LF ++Q  G+ PD    V+ ++AC+H 
Sbjct: 390 --------------------------RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHA 423

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
             L++G+     +  +  KI   L          L C+ + L                  
Sbjct: 424 GLLEEGRSCFKLM-TDHYKITPRL--------EHLACMVDLL------------------ 456

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
                 G A K  E +  ++   + PNE  +  +LGACR     D G    + + Q   L
Sbjct: 457 ------GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ---L 507

Query: 560 EP-NSKHYGCMVDLLGRAGMLKE 581
            P  S +Y  + ++  +AG  +E
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEE 530



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 8/256 (3%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y     V  AR +FD + E++V+  + MI  Y  +  + E + +F  M    +RPD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ AC+    +  G+ IH    K GL     +G  L+ MY K G +  A  V  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + V SWN+L++G+A N   D +LE+  EM+   ++ +  T   +L A  +     E
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTE 257

Query: 546 GHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGAL 601
              +   M    ++   S   +  M+ +  +  M  EA EL   +E+    PD  +  ++
Sbjct: 258 NVMYVKDMF--FKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSV 315

Query: 602 LGACKKHGDHEMGERV 617
           L AC       +G+++
Sbjct: 316 LPACGDTSALSLGKKI 331



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 31/311 (9%)

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           DQ S   ++F+  Q     PD  TL                + +H+ I    L+ NS LG
Sbjct: 34  DQKSPQETVFLLGQVLDTYPDIRTL----------------RTVHSRIILEDLRCNSSLG 77

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             L+  Y  L  V +A +VF    E+ V   N +I  +  NG   + +++F  M    V 
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+  TF  VL AC   G +  G R  +    +  L         +V + G+ G L EA  
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIG-RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           +++ M    DV +W +L+    ++   +    V R++  ++  HD   +       S   
Sbjct: 197 VLDEMSRR-DVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
            ++V+ V+ M  + G       S++  N +I  ++         N +     E+  +++ 
Sbjct: 256 TENVMYVKDMFFKMG-----KKSLVSWNVMIGVYMK--------NAMPVEAVELYSRMEA 302

Query: 705 EGYAPDTLEVA 715
           +G+ PD + + 
Sbjct: 303 DGFEPDAVSIT 313


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/751 (33%), Positives = 399/751 (53%), Gaps = 101/751 (13%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F E+P  +   +++++  Y +     +A+ L+  M       + +T+  + +  ++ + +
Sbjct: 95  FYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLL 154

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-VLDLVSWNSILAG 206
            +GK IH H +K  FDS+ +V   L++MYA C  +  A  LF+ +P   + V W +++ G
Sbjct: 155 EKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTG 214

Query: 207 Y---------------VNADNVEEAKFIYNKMPER------------------------N 227
           Y               +  + +E  +F +  +                           N
Sbjct: 215 YSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGAN 274

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   ++++ ++ + G+++ A R+ + M   D VSW+++I    +  + EEAL LF  M  
Sbjct: 275 VFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHL 334

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             + +DE    SVL+  + +  ++   SVH+L VK G E Y  + NAL+ MY+       
Sbjct: 335 RHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYA------- 387

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                   K G  + A  +F+ M +KDV+SW+++++G   +  +
Sbjct: 388 ------------------------KRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSY 423

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF EM+  GI PD+  + +V+SAC  L  L+ GK +HA   K+GL  +  +  +L
Sbjct: 424 EEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSL 483

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + MY K GC+++A +VF   E + V +W ALI+G+A NG                     
Sbjct: 484 VSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD----------------- 526

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
                      H GLV+ G  +F SM + + ++P  +HY CM+DLLGR+G L EA+EL+ 
Sbjct: 527 -----------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLN 575

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            M + PD   W ALL AC+ HG+ E+GER    L EL+P +   +VLLSN++++ G+W++
Sbjct: 576 QMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEE 635

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
             + R +M  RGV K PGCS IE +  +H F++ DR+HP+  EI + +DE+   +K  GY
Sbjct: 636 AAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGY 695

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PD      D+D+E KE  L  HSEKLA+AFGL+T+ P  PIRI KNLRIC DCHTA K+
Sbjct: 696 VPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKY 755

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +S  F R +++RD + FHHF+ G+CSC D+W
Sbjct: 756 VSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 146/278 (52%), Gaps = 3/278 (1%)

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           N ++   S CG +  A KLFD   + D  SWN+MI  Y   G + +AR LF     +  +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           +WS++ISGY ++    E L LF EMQ+ G RP++ T  SV+  C+  V L++GK IHA+ 
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFH-GTEEKGVSSWNALIIGFAMNGLADKS 511
            K     N+ + T L+DMY K  C+  A  +F    +++    W A++ G++ NG   K+
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           +E F +M+  G+  N+ TF  +L AC  +     G +    +++      N      +VD
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG-FGANVFVGSALVD 283

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  + G L  A  ++E+M +  D  +W +++  C + G
Sbjct: 284 MYSKCGDLSNARRMLETMEVD-DPVSWNSMIVGCVRQG 320



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 201/463 (43%), Gaps = 67/463 (14%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           +N +++  + CG +  ARKLFD  P  D  SWN+++  Y N+  + EA+ ++ + P R+ 
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           I  +S+I  + R G   EA  LF EM              YE                  
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQ-------------YEGER--------------- 135

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
               ++    SVL  C+   +++ G  +HA A+K   +    +   L+ MY+ C  I  A
Sbjct: 136 ---PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEA 192

Query: 349 EKLFD-AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           E LF+ A    + + W +M++GY + G   KA                            
Sbjct: 193 EYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA---------------------------- 224

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              +  F +M+  GI  ++ T  S+++AC  + A   G  +H  I ++G   N  +G+ L
Sbjct: 225 ---IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSAL 281

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G + NA  +    E     SWN++I+G    GL +++L +F  M    +  +E
Sbjct: 282 VDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDE 341

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
            T+  VL  C    +        +S+I +   E        +VD+  + G    A ++ E
Sbjct: 342 FTYPSVLN-CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFE 400

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERV--GRKLVELQPDH 628
            M    DV +W +L+  C  +G +E   R+    +++ + PD 
Sbjct: 401 KMT-DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQ 442



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 130/265 (49%), Gaps = 42/265 (15%)

Query: 47  TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAY 106
            Q+   ++ +G  A+ F  S L+   +      ++S + ++   +E  +   +N+M+   
Sbjct: 260 AQVHGCIVRSGFGANVFVGSALVDMYSKCG---DLSNARRMLETMEVDDPVSWNSMIVGC 316

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           +++ + ++A+ L+++M   ++ +D +TYP +    +  + +     +H  ++K GF++  
Sbjct: 317 VRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYK 376

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
            VNN L++MYA  G    A  +F++    D++SW S++ G V+  + EEA  ++ +M   
Sbjct: 377 LVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 436

Query: 224 ---PERNIIAS---------------------------------NSMIVLFGRKGNVAEA 247
              P++ +IA+                                 NS++ ++ + G + +A
Sbjct: 437 GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 496

Query: 248 CRLFKEMPKKDLVSWSALISCYEQN 272
            ++F  M  +D+++W+ALI  Y QN
Sbjct: 497 NKVFDSMEIQDVITWTALIVGYAQN 521


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/603 (38%), Positives = 347/603 (57%), Gaps = 36/603 (5%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           + S+L   ++A  +E  K ++ ++ +     N+  +  ++  +    ++  A  LF ++P
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           K +L  W+ LI  Y  N  +E A+ L+  M+++ +  D   +  VL AC+ L+ +  G  
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   ++ G E  + +  AL+ MY+                               KCG 
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYA-------------------------------KCGC 209

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           V  AR +FD ++++D V W++M++ YAQ+    E+LSL  EM   G+RP EATLV+VIS+
Sbjct: 210 VVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISS 269

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              +  L  G+ IH +  ++G + N  + T LIDMY K G V  A  +F    EK V SW
Sbjct: 270 SADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSW 329

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           NA+I G+AM+GLA ++L++F  M K    P+ ITFVG L AC    L+DEG   +N M++
Sbjct: 330 NAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVR 388

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           + R+ P  +HY CMVDLLG  G L EA +LI  M + PD   WGALL +CK HG+ E+ E
Sbjct: 389 DCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAE 448

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
               KL+EL+PD  G +V+L+N++A  G+W+ V  +R +M+ +G+ K   CS IE    +
Sbjct: 449 VALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKV 508

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           + FL+GD +HP    I   L  +   ++  GY PDT  V  D++++EK   +  HSE+LA
Sbjct: 509 YAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLA 568

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCM 795
           IAFGLI+  P   + I KNLRIC DCH A KFIS+  +REI VRD +R+HHF+HG CSC 
Sbjct: 569 IAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCG 628

Query: 796 DFW 798
           D+W
Sbjct: 629 DYW 631



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 229/506 (45%), Gaps = 70/506 (13%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C S K      Q+ +++   G+  +   A++L+ F +       +  +  +F  +  
Sbjct: 65  LESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVC---NSLRNAHHLFDKIPK 121

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N F++N ++RAY      + AI LY  ML   +  DN+T P + +A +   ++ EG++I
Sbjct: 122 GNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVI 181

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H+ V+++G++ DV+V   L++MYA CG +  AR +FD+    D V WNS+LA Y    + 
Sbjct: 182 HERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHP 241

Query: 214 EEAKFIYNKMPERNIIASNSMIV------------------------------------- 236
           +E+  +  +M  + +  + + +V                                     
Sbjct: 242 DESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTAL 301

Query: 237 --LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
             ++ + G+V  AC LF+ + +K +VSW+A+I+ Y  + +  EAL LF  M+      D 
Sbjct: 302 IDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK-EAQPDH 360

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ----NALIHMYSSCGEITTAEK 350
           +  V  L+AC+   ++  G +++ L V+   +C IN        ++ +   CG++  A  
Sbjct: 361 ITFVGALAACSRGRLLDEGRALYNLMVR---DCRINPTVEHYTCMVDLLGHCGQLDEA-- 415

Query: 351 LFDAGHNLDLIS----WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQ 403
            +D    +D++     W ++++     G+VE A    + +IE    D  ++  + + YAQ
Sbjct: 416 -YDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQ 474

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             ++     L   M   GI+ + A   S I     + A   G   H     N   I + L
Sbjct: 475 SGKWEGVARLRQLMIDKGIKKNIA--CSWIEVKNKVYAFLSGDVSH----PNSGAIYAEL 528

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEE 489
              L  +  + G V +   VFH  EE
Sbjct: 529 -KRLEGLMREAGYVPDTGSVFHDVEE 553



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 219/505 (43%), Gaps = 95/505 (18%)

Query: 62  TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKL 121
           +F++ R  + ++ +L  +    SF +  F  SP  F+     +++  + +PQ  +  +  
Sbjct: 2   SFSSIRKTQETSRILSIL----SFSLNLFPVSPYYFLH----QSFATQLIPQHKVDSFPS 53

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
             +N+     Y Y  L ++     ++  GK +H  + + G   ++ +   L+N Y+VC  
Sbjct: 54  SPSNH-----YYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNS 108

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------------P----- 224
           L  A  LFD+ P  +L  WN ++  Y      E A  +Y++M            P     
Sbjct: 109 LRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKA 168

Query: 225 ----------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
                                 ER++    +++ ++ + G V +A  +F ++  +D V W
Sbjct: 169 CSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLW 228

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           +++++ Y QN   +E+L L   M    V   E  +V+V+S+ A++  +  G  +H    +
Sbjct: 229 NSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWR 288

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G +    ++ ALI MY+ CG +  A  LF+      ++SWN++I+G             
Sbjct: 289 HGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITG------------- 335

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                             YA H    E L LF  M     +PD  T V  ++AC+    L
Sbjct: 336 ------------------YAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLL 376

Query: 443 DQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE---EKGVSSWNA 497
           D+G+ ++  + ++  +IN  +   T ++D+    G +D A ++    +   + GV  W A
Sbjct: 377 DEGRALYNLMVRD-CRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGV--WGA 433

Query: 498 LIIGFAMNG---LADKSLEMFSEMK 519
           L+     +G   LA+ +LE   E++
Sbjct: 434 LLNSCKTHGNVELAEVALEKLIELE 458


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 343/572 (59%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++ A  S++ ++   G + +A ++F+E+P++ +V+W+AL S Y     + EA+ LF  M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV 204

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  D   +V VLSAC ++  + +G  +     ++ ++     +N+ +          
Sbjct: 205 EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQ-----KNSFVR--------- 250

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                             ++++ Y KCG +EKAR++FD+M EKD+V+WSTMI GYA +  
Sbjct: 251 -----------------TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSF 293

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E +  F++M    ++PD+ ++V  +S+C  L ALD G+W  + I ++    N  +   
Sbjct: 294 PKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANA 353

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G +    EVF   +EK +   NA I G A NG    S  +F + +K G++P+
Sbjct: 354 LIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPD 413

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF+G+L  C H GL+ +G R FN++   + L+   +HYGCMVDL GRAGML +A  LI
Sbjct: 414 GSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLI 473

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MPM P+   WGALL  C+   D ++ E V ++L+ L+P + G +V LSNI++  GRWD
Sbjct: 474 CDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWD 533

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +  EVR MM R+G+ KIPG S IE  G +HEFLA D++HP  ++I   L+++  +++L G
Sbjct: 534 EAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           + P T  V FD++ EEKE  L  HSEKLA+AFGLI+      IR++KNLR+C DCH   K
Sbjct: 594 FVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMK 653

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+   REIVVRD +RFH F +GSCSC D+W
Sbjct: 654 LISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/603 (22%), Positives = 261/603 (43%), Gaps = 110/603 (18%)

Query: 27  TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           T  +  ++T +    +F    Q+   +I   L  DTF  + L+K +   L F +  YSF 
Sbjct: 10  TSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRT---LFFRQTHYSFL 66

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F+  + PN F++NT++  ++  ++  + + L+  +  + + +  +T+PL+ +A     +
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G  +H  V+K GF+ DV    +L+++Y+  G L+ A K+F+E P   +V+W ++ +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 207 YVNADNVEEAKFIYNKMPE---------------------------------------RN 227
           Y  A    EA  ++ KM E                                       +N
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKN 246

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
                +++ L+ + G + +A  +F  M +KD+V+WS +I  Y  N   +E +  F+ M+ 
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQ 306

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  D+  +V  LS+CA+L  +  G    +L  +      + + NALI MY+ CG +  
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
             ++F      D++  N+ ISG  K G V+ + A+F                        
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG----------------------- 403

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
                   + +  GI PD +T + ++  C           +HA + ++GL+         
Sbjct: 404 --------QTEKLGISPDGSTFLGLLCGC-----------VHAGLIQDGLRF-------- 436

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
              +  + CV  AL       ++ V  +  ++  +   G+ D +  +  +M    + PN 
Sbjct: 437 ---FNAISCV-YAL-------KRTVEHYGCMVDLWGRAGMLDDAYRLICDMP---MRPNA 482

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELI 586
           I +  +L  CR   LV +       + +   LEP N+ +Y  + ++   +G   EA E+ 
Sbjct: 483 IVWGALLSGCR---LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVR 539

Query: 587 ESM 589
           + M
Sbjct: 540 DMM 542



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           TL+SV S   HL  +     IH ++  +   +N +L  TL            +  +F  T
Sbjct: 18  TLISVASTFNHLKQV-HVSLIHHHLHHDTFLVNLLLKRTLF-----FRQTHYSFLLFSHT 71

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC-----RHMGL 542
           +   +  +N LI GF  N L  ++L++F  ++K G+  +  TF  VL AC     R +G+
Sbjct: 72  QFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGI 131

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
                   +S++ +     +      ++ +   +G L +A ++ E +P    V TW AL 
Sbjct: 132 ------DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIP-ERSVVTWTALF 184

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHAS---KGRW 645
                 G H     + +K+VE+    D +    VL + +H      G W
Sbjct: 185 SGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEW 233


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 336/565 (59%), Gaps = 34/565 (6%)

Query: 234  MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
            M V F R   +  A  +F+++P      W+ +I  +  +  +  +L L+  M++  +  D
Sbjct: 761  MYVSFNR---IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPD 817

Query: 294  EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            +      L +CA L+ ++ G  +H   V  G    + +  AL+ MY+             
Sbjct: 818  KFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYA------------- 864

Query: 354  AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                              KCG +E AR +FD M  +D+VSW++MISGYA +   SETL  
Sbjct: 865  ------------------KCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGF 906

Query: 414  FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
            F  M+  G+ P+  +++SV+ AC +L AL +G+W H+Y+ + G + + ++ T ++DMY K
Sbjct: 907  FDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK 966

Query: 474  LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
             G +D A  +F  T  K +  W+A+I  + ++G   K++++F +M K+GV P+ +TF  V
Sbjct: 967  CGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCV 1026

Query: 534  LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
            L AC H GL++EG  +F  M +E  +     +Y CMVDLLGRAG L EA +LIE+MP+ P
Sbjct: 1027 LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEP 1086

Query: 594  DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
            D + WG+LLGAC+ H + ++ E++   L  L P H G+HVLLSNI+A+K RW++V +VR 
Sbjct: 1087 DASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRK 1146

Query: 654  MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            MM RRG  KI G S++E +  +H+F  GDR+HPQ  ++   L+E+A  +K  GY P T  
Sbjct: 1147 MMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDF 1206

Query: 714  VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
            V  DI++E KE  L  HSE+LAIAFGLI  SP   +RI KNLRIC DCH A K IS+  +
Sbjct: 1207 VLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVN 1266

Query: 774  REIVVRDRHRFHHFKHGSCSCMDFW 798
            R I+VRD HRFH F+ G CSC D+W
Sbjct: 1267 RVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/722 (32%), Positives = 382/722 (52%), Gaps = 77/722 (10%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +L    Q C + +  +Q+ SQ+  TG++ DTF A++L            +  + K+F   
Sbjct: 6   VLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKC---ASLQAARKVFDET 62

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEG 150
             PN  ++N+ +R+Y +    ++ + L+ LM+       DN+T P+  +A A    +  G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 151 KLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           K+IH    K     SD++V + L+ +Y+ CG +  A K+F+E    D V W S++ GY  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 210 ADNVEEAKFIYNKMPERNIIA--------------------------------------- 230
            ++ EEA  ++++M   + +                                        
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 231 -SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             NS++ L+ + G    A  LF +MP+KD++SWS +I+CY  NE   EAL LF  MI+ R
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              + V VVS L ACA    ++ G  +H +AV  G E   ++  ALI MY          
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMY---------- 352

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                                +KC   ++A  LF  + +KDVVSW  ++SGYAQ+    +
Sbjct: 353 ---------------------MKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYK 391

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           ++ +F  M   GI+PD   +V +++A + L    Q   +H Y+ ++G   N  +G +LI+
Sbjct: 392 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIE 451

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEI 528
           +Y K G + +A+++F G   + V  W+++I  + ++G   ++LE+F +M K S V PN +
Sbjct: 452 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNV 511

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+ +L AC H GLV+EG + F+ M+ +++L P+S+H+G MVDLLGR G L +A ++I  
Sbjct: 512 TFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINR 571

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+      WGALLGAC+ H + EMGE   + L  L P H G+++LLSNI+A  G+WD+V
Sbjct: 572 MPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNV 631

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            E+R  +  RG+ K+ G SM+E  G +H FLA DR HP   +I  +L ++  ++  E Y 
Sbjct: 632 AELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYI 691

Query: 709 PD 710
           PD
Sbjct: 692 PD 693



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 166/380 (43%), Gaps = 70/380 (18%)

Query: 68   LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
            L KF+   + F  +  +  +F  + +P  F++N M+R +        ++ LY  M+   +
Sbjct: 755  LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGL 814

Query: 128  GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
              D + +P   ++ A    +  GK+IH H++  G  +D++V+  L++MYA CGD+ AAR 
Sbjct: 815  KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARL 874

Query: 188  LFDESPVLDLVSWNSILAGYV-NADNVEEAKF---------IYNKMP------------- 224
            +FD+  V DLVSW S+++GY  N  N E   F         I N++              
Sbjct: 875  VFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGA 934

Query: 225  ----------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
                            E +I+ + +++ ++ + G++  A  LF E   KDLV WSA+I+ 
Sbjct: 935  LRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIAS 994

Query: 269  YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY 328
            Y  +    +A+ LF  M+   V    V    VLSAC++  +++ G     L  +      
Sbjct: 995  YGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTE------ 1048

Query: 329  INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-I 387
                           E   A KL +    +DL+          + G + +A  L + M +
Sbjct: 1049 ---------------EFVIARKLSNYACMVDLLG---------RAGQLSEAVDLIENMPV 1084

Query: 388  EKDVVSWSTMISGYAQHDQF 407
            E D   W +++     H+  
Sbjct: 1085 EPDASIWGSLLGACRIHNNL 1104



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 141/627 (22%), Positives = 269/627 (42%), Gaps = 55/627 (8%)

Query: 43   FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            F+Q   +   ++ +G  ++ F  + LI+  +       +  + K+F  +   +  I+++M
Sbjct: 424  FQQALCLHGYVVRSGFNSNVFVGASLIELYSKC---GSLGDAVKLFKGMIVRDVVIWSSM 480

Query: 103  MRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEG-----KLIHDH 156
            + AY       +A+ ++  M+ N+ V  +N T+  +  A +    V EG     +++HD+
Sbjct: 481  IAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 157  VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVSWNSILAGYVNADNVE- 214
             L+   DS+ +    ++++    G L  A  + +  P+      W ++L       N+E 
Sbjct: 541  QLRP--DSEHF--GIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEM 596

Query: 215  ---EAKFIYNKMPERN---IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS----- 263
                AK ++   P      I+ SN +  + G+  NVAE     KE   K +   S     
Sbjct: 597  GEAAAKNLFWLDPSHAGYYILLSN-IYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVR 655

Query: 264  -ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT--VVKAGTSVHALA 320
              + S    +  + ++  ++  +      + + V +  L    + T  V++    + A  
Sbjct: 656  GGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQFWQRIKATE 715

Query: 321  VKIGIECYINLQNALIHMYSSCGEI--TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             K     Y  + +A      SC      T  K+F  G   D          Y+    ++ 
Sbjct: 716  SK-----YKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDA 770

Query: 379  ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
            A  +F+ +       W+ MI G+A   +F  +L L+ +M   G++PD+      + +C  
Sbjct: 771  ASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAG 830

Query: 439  LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
            L  L +GK IH ++   G   +  +   L+DMY K G ++ A  VF     + + SW ++
Sbjct: 831  LSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSM 890

Query: 499  IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
            I G+A NG   ++L  F  M+ SGV PN ++ + VL AC ++G + +G   F+S + +  
Sbjct: 891  ISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTG 949

Query: 559  LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
             E +      ++D+  + G L  A  L +      D+  W A++ +   HG        G
Sbjct: 950  FEFDILVATAIMDMYSKCGSLDLARCLFDETA-GKDLVCWSAMIASYGIHGH-------G 1001

Query: 619  RKLVEL---------QPDHDGFHVLLS 636
            RK ++L         +P H  F  +LS
Sbjct: 1002 RKAIDLFDQMVKAGVRPSHVTFTCVLS 1028



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 157/390 (40%), Gaps = 72/390 (18%)

Query: 151  KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
            K  H  +   G   D  +      MY     + AA  +F++ P      WN ++ G+   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 211  DNVEEAKFIYNKMPER---------------------------------------NIIAS 231
                 +  +Y+KM E+                                       ++   
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 232  NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             +++ ++ + G++  A  +F +M  +DLVSW+++IS Y  N    E L  F  M    V+
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 292  VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             + V ++SVL AC NL  ++ G   H+  ++ G E  I +  A++ MYS CG +  A  L
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
            FD     DL+ W++MI+ Y   G   KA  LFD M++                       
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKA---------------------- 1014

Query: 412  SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG-TTLIDM 470
                     G+RP   T   V+SAC+H   L++GK     + +  +    +     ++D+
Sbjct: 1015 ---------GVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDL 1065

Query: 471  YMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
              + G +  A+++      E   S W +L+
Sbjct: 1066 LGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 47/239 (19%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            + +M+  Y       + +  + LM ++ V  +  +   +  A     ++ +G+  H +V+
Sbjct: 887  WTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVI 946

Query: 159  KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----------- 207
            + GF+ D+ V   +++MY+ CG L  AR LFDE+   DLV W++++A Y           
Sbjct: 947  QTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAID 1006

Query: 208  ---------VNADNV---------------EEAKFIYNKMPERNIIASN-----SMIVLF 238
                     V   +V               EE K  +  M E  +IA        M+ L 
Sbjct: 1007 LFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLL 1066

Query: 239  GRKGNVAEACRLFKEMP-KKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            GR G ++EA  L + MP + D   W +L+ +C   N      L L   + DH   +D V
Sbjct: 1067 GRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNN-----LDLAEKIADHLFHLDPV 1120


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 333/572 (58%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I+  N+++ ++ + G++ EA ++F++MP++D V+W+ LIS Y Q++   +AL+ F  M+
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                 +E  + SV+ A A       G  +H   VK G +  +++ +AL+ +Y+      
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT------ 207

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    + G ++ A+ +FDA+  ++ VSW+ +I+G+A+   
Sbjct: 208 -------------------------RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             + L LF  M   G RP   +  S+  AC+    L+QGKW+HAY+ K+G K+ +  G T
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G + +A ++F    ++ V SWN+L+  +A +G   +++  F EM++ G+ PN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EI+F+ VL AC H GL+DEG  H+  ++++  + P + HY  +VDLLGRAG L  A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E MP+ P  A W ALL AC+ H + E+G      + EL PD  G HV+L NI+AS GRW+
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   VR  M   GV K P CS +E    IH F+A D  HPQ  EI    +E+  K+K  G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V   +DQ+E+E  L  HSEK+A+AF L+   P + I I KN+R+C DCHTA K
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S+   REI+VRD +RFHHFK G+CSC D+W
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 190/404 (47%), Gaps = 72/404 (17%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           LL + +  +L + +G+++H H+L++ F  D+ + NTL+NMYA CG L  ARK+F++ P  
Sbjct: 66  LLKKCTVFKL-LIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKM--------------------PER--------- 226
           D V+W ++++GY   D   +A   +N+M                     ER         
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 227 ----------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                     N+   ++++ L+ R G + +A  +F  +  ++ VSW+ALI+ + +    E
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           +AL LF  M+            S+  AC++   ++ G  VHA  +K G +      N L+
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+  G I  A K+FD     D++SWNS                               
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKRDVVSWNS------------------------------- 333

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +++ YAQH    E +  F EM+  GIRP+E + +SV++AC+H   LD+G   +  ++K+G
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG 393

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +   +    T++D+  + G ++ AL        E   + W AL+
Sbjct: 394 IVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 35/321 (10%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D     ++L  C    ++  G  VHA  ++      I + N L++MY+ CG +  A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           K+F+     D ++W ++I                               SGY+QHD+  +
Sbjct: 116 KVFEKMPQRDFVTWTTLI-------------------------------SGYSQHDRPCD 144

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L  F +M   G  P+E TL SVI A         G  +H +  K G   N  +G+ L+D
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           +Y + G +D+A  VF   E +   SWNALI G A     +K+LE+F  M + G  P+  +
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           +  + GAC   G +++G      MI+   +L   + +   ++D+  ++G + +A ++ + 
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN--TLLDMYAKSGSIHDARKIFDR 322

Query: 589 MPMSPDVATWGALLGACKKHG 609
           +    DV +W +LL A  +HG
Sbjct: 323 LAKR-DVVSWNSLLTAYAQHG 342



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 146/333 (43%), Gaps = 45/333 (13%)

Query: 35  THLQKCQSFKQFTQ--ILSQMILTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T L+KC  FK   Q  I+   IL  +   D    + L+          E     K+F  +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR---KVFEKM 121

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              +   + T++  Y Q + P  A+  +  ML      + +T   + +A+A       G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   +K GFDS+V+V + L+++Y   G +  A+ +FD     + VSWN+++AG+    
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 212 NVEEAKFIYNKMPERNI---------------------------------------IASN 232
             E+A  ++  M                                             A N
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ ++ + G++ +A ++F  + K+D+VSW++L++ Y Q+   +EA+  F  M    +  
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRP 361

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +E+  +SVL+AC++  ++  G   + L  K GI
Sbjct: 362 NEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  LES N   +N ++  + +R+  ++A+ L++ ML +     +++Y  L  A +    
Sbjct: 218 VFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGF 277

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H +++K+G     +  NTL++MYA  G +  ARK+FD     D+VSWNS+L  
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN---------------------------------- 232
           Y      +EA + + +M    I  +                                   
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPE 397

Query: 233 -----SMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
                +++ L GR G++  A R  +EMP +   + W AL++
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 128/267 (47%), Gaps = 18/267 (6%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           I  D     +++  CT    L QG+ +HA+I ++  + + ++G TL++MY K G ++ A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF    ++   +W  LI G++ +     +L  F++M + G +PNE T   V+ A     
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
               GH+  +    +   + N      ++DL  R G++ +A+ + +++    DV +W AL
Sbjct: 176 RGCCGHQ-LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SWNAL 233

Query: 602 L-GACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMM 655
           + G  ++ G  +  E     L +  +P H  +  L     ++    +G+W     V   M
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW-----VHAYM 288

Query: 656 VRRG--VVKIPGCSMIE---ANGIIHE 677
           ++ G  +V   G ++++    +G IH+
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHD 315


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/686 (35%), Positives = 366/686 (53%), Gaps = 68/686 (9%)

Query: 153 IHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           +H HV   G    + Y+   L   YAVCG +  A+ +FD+  + +   WNS++ GY   +
Sbjct: 44  LHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNN 103

Query: 212 NVEEAKFIYNKM------------P---------------------------ERNIIASN 232
           +   A F+Y KM            P                           E ++   N
Sbjct: 104 SPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGN 163

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           S++ ++ + G+V  A  +F  M  +DL SW+ ++S + +N     A  +F +M     + 
Sbjct: 164 SILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVG 223

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D   ++++LSAC ++  +K G  +H   V+ G                            
Sbjct: 224 DRTTLLALLSACGDVMDLKVGKEIHGYVVRNG---------------------------- 255

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           ++G   +    NS+I  Y  C SV  AR LF+ +  KDVVSW+++ISGY +     + L 
Sbjct: 256 ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALE 315

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF  M   G  PDE T++SV++AC  + AL  G  + +Y+ K G  +N ++GT LI MY 
Sbjct: 316 LFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYA 375

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
             G +  A  VF    EK + +   ++ GF ++G   +++ +F EM   GVTP+E  F  
Sbjct: 376 NCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTA 435

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC H GLVDEG   F  M +++ +EP   HY C+VDLLGRAG L EA  +IE+M + 
Sbjct: 436 VLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLK 495

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P+   W ALL AC+ H + ++     +KL EL PD    +V LSNI+A++ RW+DV  VR
Sbjct: 496 PNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVR 555

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            ++ +R + K P  S +E N ++H+F  GD +H Q ++I   L ++ ++LK  GY PDT 
Sbjct: 556 ALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTS 615

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            V +D+++E KE  L+ HSE+LA+AF LI   P   IRI KNLR+C DCHT  K IS+  
Sbjct: 616 LVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLT 675

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           +REI++RD  RFHHF+ G CSC  +W
Sbjct: 676 NREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 155/555 (27%), Positives = 254/555 (45%), Gaps = 85/555 (15%)

Query: 21  KPIFKPTINLSILETHLQKCQSFKQFTQILS--QMILTG--LIADTFAASRLIKFSTDLL 76
           KP    T +     T LQ   + K  TQ L     + TG  L  +T+ A++L   +    
Sbjct: 13  KPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKL---AACYA 69

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
               M Y+  IF  +   N F++N+M+R Y   N P +A+ LY  ML+     DN+TYP 
Sbjct: 70  VCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPF 129

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           + +A    L    G+ +H  V+  G + DVYV N++++MY   GD+ AAR +FD   V D
Sbjct: 130 VLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRD 189

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS------------------------- 231
           L SWN++++G+V       A  ++  M     +                           
Sbjct: 190 LTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHG 249

Query: 232 -----------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                            NS+I ++    +V+ A +LF+ +  KD+VSW++LIS YE+   
Sbjct: 250 YVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGD 309

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
             +AL LF  M+    + DEV V+SVL+AC  ++ ++ G +V +  VK G    + +  A
Sbjct: 310 AFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTA 369

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           LI MY++CG +  A ++F                               D M EK++ + 
Sbjct: 370 LIGMYANCGSLVCACRVF-------------------------------DEMPEKNLPAC 398

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIR 453
           + M++G+  H +  E +S+F EM   G+ PDE    +V+SAC+H   +D+GK I +   R
Sbjct: 399 TVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTR 458

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMN---GLAD 509
              ++      + L+D+  + G +D A  V    + K     W AL+    ++    LA 
Sbjct: 459 DYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAV 518

Query: 510 KSLEMFSEMKKSGVT 524
            S +   E+   GV+
Sbjct: 519 ISAQKLFELNPDGVS 533


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 341/553 (61%), Gaps = 15/553 (2%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLF----DESPVLDLVSWNSILAGYVNADNVEEAK- 217
           D  ++V N ++ MYA  G L     LF    ++    D  ++  +L       +V + + 
Sbjct: 205 DPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEK 264

Query: 218 ---FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
              FI     + +    NS+I ++    NV  A +LF EM  +D VSW+ +IS Y +   
Sbjct: 265 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRR 324

Query: 275 YEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQ 332
           +E+A+  F  M        DE  VVS LSAC  L  ++ G  +H    K +G    I+  
Sbjct: 325 FEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID-- 382

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           NAL+ MY+ CG +  A  +FD     ++I W SMISGY+ CG + +AR LFD    +DVV
Sbjct: 383 NALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVV 442

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
            W+ MI+GY Q   F + ++LF EMQ   ++PD+ T+V++++ C  L AL+QGKWIH Y+
Sbjct: 443 LWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYL 502

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            +N + ++ ++GT LI+MY K GCVD +LE+F+  E+K  +SW ++I G AMNG   ++L
Sbjct: 503 DENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEAL 562

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +FSEM++ G  P++ITF+GVL AC H GLV+EG R FNSM + HR+EP  +HYGC++DL
Sbjct: 563 RLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDL 622

Query: 573 LGRAGMLKEAEELIESMPMSP---DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629
           LGRAG+L EAEELI+ +P+      V  +GALL AC+ H + +MGER+ +KL  ++    
Sbjct: 623 LGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDS 682

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
             H LL+NI+AS  RW+D  +VR  M   GV K+PGCS+IE +GI+HEFL GD +HP++ 
Sbjct: 683 SIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMM 742

Query: 690 EIDNMLDEMAKKL 702
           EI +ML+ +  +L
Sbjct: 743 EICSMLNRVTGQL 755



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 151/621 (24%), Positives = 263/621 (42%), Gaps = 136/621 (21%)

Query: 1   MTLATKLAHLSSTIKSSVNAKPIFKPTINL---SILETHLQKCQSFKQFTQILSQMILTG 57
           +++  ++  +S    SS +  P+      L   S +E  L+ C+S  Q  QI SQ+   G
Sbjct: 112 LSIIRRVQFISRHFSSSPHLVPVLLRISKLTKKSCIEC-LRNCKSMDQLKQIQSQIFRIG 170

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           L  D    ++L+ F  D      + Y+ KIF +++ P+ F++N M++ Y +R + ++ + 
Sbjct: 171 LEGDRDTINKLMAFCADS-SLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLL 229

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L++ +  + +  D +TYP + +A      V +G+ +   ++K G D D YV N+LI+MY 
Sbjct: 230 LFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYY 289

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-------PERNIIA 230
              ++  A+KLFDE    D VSWN +++GYV     E+A   + +M       P+   + 
Sbjct: 290 ELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVV 349

Query: 231 S--------------------------------NSMIVLFGRKGNVAEACRLFKEM---- 254
           S                                N+++ ++ + G +  A  +F EM    
Sbjct: 350 STLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKN 409

Query: 255 ---------------------------PKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
                                      P +D+V W+A+I+ Y Q   +++A+ LF  M  
Sbjct: 410 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQI 469

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            RV  D+  VV++L+ CA L  ++ G  +H    +  I   + +  ALI MYS CG +  
Sbjct: 470 QRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDK 529

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           + ++F    + D  SW S+I                                G A + + 
Sbjct: 530 SLEIFYELEDKDTASWTSII-------------------------------CGLAMNGKT 558

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           SE L LF EM+  G +PD+ T + V+SAC+H   +++G+                     
Sbjct: 559 SEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFF------------------ 600

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
                      N+++  H  E K V  +  +I      GL D++ E+  E+         
Sbjct: 601 -----------NSMKKVHRIEPK-VEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVV 648

Query: 528 ITFVGVLGACRHMGLVDEGHR 548
             +  +L ACR    VD G R
Sbjct: 649 PLYGALLSACRIHNNVDMGER 669


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/777 (33%), Positives = 409/777 (52%), Gaps = 73/777 (9%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           DTF A+ L+     L P   ++ + ++F  +   N   F T+++ Y  R   ++A  L++
Sbjct: 83  DTFCANVLLNLYAKLGP---LAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFR 139

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            +      V+++    + +      +      IH    K G D + +V ++LI+ Y++CG
Sbjct: 140 RLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCG 199

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS--- 231
            +S AR +FD     D V+W ++++ Y   D  E+A   ++KM      P   ++ S   
Sbjct: 200 AVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLK 259

Query: 232 ------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                                          +++ ++ + G + +A  +F+ +P  D++ 
Sbjct: 260 AAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVIL 319

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           WS LIS Y Q+   E+A  +F+ M+   V+ +E  +  VL ACAN+  +  G  +H L +
Sbjct: 320 WSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           K+G E  + + NAL+ +Y+                               KC ++E +  
Sbjct: 380 KLGYESELFVGNALMDVYA-------------------------------KCRNMENSLE 408

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +F ++ + + VSW+T+I GY Q     + LS+F EM+   +   + T  SV+ AC +  +
Sbjct: 409 IFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTAS 468

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           +     IH+ I K+    ++I+  +LID Y K GC+ +AL+VF    +  V SWNA+I G
Sbjct: 469 IKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISG 528

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +A++G A  +LE+F+ M KS   PN++TFV +L  C   GLV++G   FNSM  +HR++P
Sbjct: 529 YALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKP 588

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           +  HY C+V LLGRAG L +A + I  +P +P    W ALL +C  H +  +G+    K+
Sbjct: 589 SMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKV 648

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
           +E++P  +  +VLLSN++A+ G  D V  +R  M   GV K  G S +E  G +H F  G
Sbjct: 649 LEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVG 708

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
              HP +  I+ ML+ +  K   EGY PD   V  D+D+EEK   L+ HSE+LA+A+GL 
Sbjct: 709 SADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLS 768

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              P +PIRIMKNLR C DCHT  K IS+   REIVVRD +RFHHF  G CSC D+W
Sbjct: 769 MTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 195/422 (46%), Gaps = 42/422 (9%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA------SNSMIVLFGRKGNVAE 246
           P LD  +   +L   +   +    + ++ ++ +R  +A      +N ++ L+ + G +A 
Sbjct: 43  PKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAA 102

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A RLF  MP++++VS+  L+  Y     +EEA  LF  +      V+  V+ ++L     
Sbjct: 103 ARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVA 162

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           +        +HA A K+G +    + ++LI  YS CG ++ A  +FD       I W   
Sbjct: 163 MDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDG------IIWKDA 216

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           ++                         W+ M+S Y+++D   + L+ F +M+  G +P+ 
Sbjct: 217 VT-------------------------WTAMVSCYSENDIPEDALNTFSKMRMAGAKPNP 251

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L SV+ A   L +   GK IH    K        +G  L+DMY K G +++A  VF  
Sbjct: 252 FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEI 311

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
                V  W+ LI  +A +   +++ EMF  M +S V PNE +  GVL AC ++  +D G
Sbjct: 312 IPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLG 371

Query: 547 HRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            +  N +I   +L   S+ +    ++D+  +   ++ + E+  S+  + +V+    ++G 
Sbjct: 372 QQIHNLVI---KLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428

Query: 605 CK 606
           C+
Sbjct: 429 CQ 430


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/691 (35%), Positives = 376/691 (54%), Gaps = 71/691 (10%)

Query: 149 EGKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG- 206
            G+L+H   VL     +  ++ N LI MY+ C DL++A +LF   P  + VSW ++++G 
Sbjct: 38  RGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGL 97

Query: 207 --------------YVNADNVEEAKFIYNKMP------------------------ERNI 228
                          +    V   +F  +                           +  +
Sbjct: 98  SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTEL 157

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-D 287
             ++++  ++ + G ++EACR+F +MP+KD V+W+A+I  Y +N   E A++ F +M  +
Sbjct: 158 FVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKRE 217

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  D+ V  SVLSA   L       S+H    K G E  + ++NALI MY+   ++ +
Sbjct: 218 GLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVES 277

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++      +D   WN                          VVS ++MI GY + D  
Sbjct: 278 ASRVL----KIDPGGWN--------------------------VVSGTSMIDGYIETDCV 307

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L +++E++  G+ P+E T  S+I  C     L+QG  +HA + K  L  +S +G+TL
Sbjct: 308 EEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTL 367

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G +  ++++F+  E +   +WNA+I  FA +G   ++++ F  M  SG+ PN 
Sbjct: 368 VDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNH 427

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           I FV +L AC H GLVDEG ++F SM + H +EP  +HY C++D  GRAG L EA + I 
Sbjct: 428 IAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFIS 487

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP+ P+   W +LLGAC+  G  E+GE   + L++L+P + G HV LS I+AS G+W+D
Sbjct: 488 EMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWED 547

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M    + K+PG S +++N   H F + D +HPQ  +I   L+E+  ++K EGY
Sbjct: 548 VKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGY 607

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PDT  +  +++   KE  L  HSE++A+AF LI++    PI + KNLRIC DCHTA KF
Sbjct: 608 IPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKF 667

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I +   R+I+VRD  RFHHF +G CSC D+W
Sbjct: 668 ICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/607 (21%), Positives = 256/607 (42%), Gaps = 116/607 (19%)

Query: 22  PIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIA-DTFAASRLIKFSTDLLPFIE 80
           P    T++L+ L     +    ++   + ++++L+G  A  TF A+ LI   +      +
Sbjct: 15  PDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHC---AD 71

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           ++ + ++FA +   N   + T++    Q  +   A+  +  M    V    +     A+A
Sbjct: 72  LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARA 131

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
           +A   +   G  +H   ++ GFD++++V + L +MY+ CG LS A ++FD+ P  D V+W
Sbjct: 132 AAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAW 191

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------------------- 231
            +++ GY    ++E A   +  M    ++ +                             
Sbjct: 192 TAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVT 251

Query: 232 -----------NSMIVLFGRKGNVAEACRLFKEMPKK-DLVSWSALISCYEQNEMYEEAL 279
                      N++I ++ +  +V  A R+ K  P   ++VS +++I  Y + +  EEAL
Sbjct: 252 KAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEAL 311

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
           V+++ +    V  +E    S++  CA   +++ G  +HA  +K  +     + + L+ MY
Sbjct: 312 VIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMY 371

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
             CG I+ + +LF+       I+WN+                               +I+
Sbjct: 372 GKCGLISLSMQLFNEIEYRTDIAWNA-------------------------------VIN 400

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLK 458
            +AQH    E +  F  M + GIRP+    VS+++AC+H   +D+G K+ ++    +G++
Sbjct: 401 VFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIE 460

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                 + +ID Y + G +D A                                +  SEM
Sbjct: 461 PKEEHYSCIIDTYGRAGRLDEA-------------------------------YKFISEM 489

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
               + PN   +  +LGACR  G  + G     +++   +LEP +   G  V L G    
Sbjct: 490 P---IKPNAYGWCSLLGACRMRGSKELGEVAAQNLM---KLEPGNT--GIHVSLSGIYAS 541

Query: 579 LKEAEEL 585
           L + E++
Sbjct: 542 LGQWEDV 548



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 204/437 (46%), Gaps = 39/437 (8%)

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           AG +    +  A+ + +     +   +N +I ++    ++A A RLF  MP+++ VSW+ 
Sbjct: 33  AGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTT 92

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           L+S   QN M+ +AL  F  M    V      + S   A A L     G  +H + V++G
Sbjct: 93  LVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLG 152

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  + + + L  MYS CG ++ A ++FD     D ++W +MI GY K GS+E A     
Sbjct: 153 FDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAA----- 207

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALD 443
                 V+S                    F +M+  G +  D+    SV+SA   L    
Sbjct: 208 ------VLS--------------------FRDMKREGLVGADQHVFCSVLSASGGLKDGW 241

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG--VSSWNALIIG 501
             K IH  + K G ++   +   LIDMY K   V++A  V    +  G  V S  ++I G
Sbjct: 242 LSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK-IDPGGWNVVSGTSMIDG 300

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +      +++L ++ E+++ GV PNE TF  ++  C    L+++G +  ++ + +  L  
Sbjct: 301 YIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIR 359

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
           +S     +VD+ G+ G++  + +L   +    D+A W A++    +HG      +   ++
Sbjct: 360 DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQHGHGREAIQAFDRM 418

Query: 622 V--ELQPDHDGFHVLLS 636
           +   ++P+H  F  LL+
Sbjct: 419 IYSGIRPNHIAFVSLLT 435


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/570 (39%), Positives = 343/570 (60%), Gaps = 3/570 (0%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+++  +G+ G + +A +LF  +P++D V+W++L++    +     AL +  +++     
Sbjct: 42  NTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFH 101

Query: 292 VDEVVVVSVLSACANLTV--VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
            D  V  S++ ACANL V  VK G  VHA            ++++LI MY+  G      
Sbjct: 102 PDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGR 161

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD+  +L+ ISW +MISGY + G   +A  LF     +++ +W+ +ISG  Q     +
Sbjct: 162 AVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVD 221

Query: 410 TLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
              LF+EM+H GI   D   L SV+ AC +L   + GK +H  +   G +    +   LI
Sbjct: 222 AFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALI 281

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K   +  A  +F     K V SW ++I+G A +G A+++L ++ EM  +GV PNE+
Sbjct: 282 DMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEV 341

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TFVG++ AC H GLV +G   F +M+++H + P+ +HY C++DL  R+G L EAE LI +
Sbjct: 342 TFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRT 401

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP++PD  TW ALL +CK+HG+ +M  R+   L+ L+P+    ++LLSNI+A  G W+DV
Sbjct: 402 MPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDV 461

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            +VR +M+     K PG S I+     H F AG+ +HP  +EI  ++ E+ ++++  GYA
Sbjct: 462 SKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYA 521

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT  V  D+DQ+EKE  LF HSE+LA+A+GL+   P   IRI+KNLR+C DCHT  K I
Sbjct: 522 PDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLI 581

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S   +REI VRD  R+HHFK G+CSC DFW
Sbjct: 582 SAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/509 (22%), Positives = 219/509 (43%), Gaps = 100/509 (19%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + ++F  L   +   + +++ A    N P +A+ + + +L+     D++ +  L +A A 
Sbjct: 57  ALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACAN 116

Query: 144 R--LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
              L V +GK +H     + F  D  V ++LI+MYA  G     R +FD    L+ +SW 
Sbjct: 117 LGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWT 176

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
           ++++GY  +    EA  ++ + P RN+ A  ++I    + GN  +A  LF EM  + +  
Sbjct: 177 TMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGI-- 234

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
                                        + D +V+ SV+ ACANL + + G  +H + +
Sbjct: 235 ----------------------------SVTDPLVLSSVVGACANLALWELGKQMHGVVI 266

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
            +G E  + + NALI MY+ C ++  A+ +F      D++SW S+I G  + G  E+A A
Sbjct: 267 TLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALA 326

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           L+D M+                                 G++P+E T V +I AC+H   
Sbjct: 327 LYDEMVLA-------------------------------GVKPNEVTFVGLIHACSHAGL 355

Query: 442 LDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           + +G+ +    +  +G+  +    T L+D++ + G +D A  +                 
Sbjct: 356 VSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENL----------------- 398

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
                            ++   V P+E T+  +L +C+  G      R  + ++     +
Sbjct: 399 -----------------IRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPED 441

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           P+S  Y  + ++   AGM ++  ++ + M
Sbjct: 442 PSS--YILLSNIYAGAGMWEDVSKVRKLM 468



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 67/331 (20%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HA  +K G+  +  + N L++ Y  CG I  A +LFD                      
Sbjct: 25  LHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFD---------------------- 62

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
                    A+  +D V+W+++++     ++    LS+   +   G  PD     S++ A
Sbjct: 63  ---------ALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKA 113

Query: 436 CTHLVAL--DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD--------------- 478
           C +L  L   QGK +HA    +    + ++ ++LIDMY K G  D               
Sbjct: 114 CANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSI 173

Query: 479 ----------------NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
                            A  +F  T  + + +W ALI G   +G    +  +F EM+  G
Sbjct: 174 SWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEG 233

Query: 523 VT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           ++  + +    V+GAC ++ L + G +  + ++     E        ++D+  +   L  
Sbjct: 234 ISVTDPLVLSSVVGACANLALWELG-KQMHGVVITLGYESCLFISNALIDMYAKCSDLVA 292

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHE 612
           A+ +   M    DV +W +++    +HG  E
Sbjct: 293 AKYIFCEM-CRKDVVSWTSIIVGTAQHGQAE 322



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFA-FLESP--NGFIFNTMMRAYIQRNVPQQA 115
           + D+ ++   I ++T +  +      F+ F  F ++P  N F +  ++   +Q      A
Sbjct: 163 VFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDA 222

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQA---SALRLSVFE-GKLIHDHVLKAGFDSDVYVNNT 171
             L+  M +  + V   T PL+  +   +   L+++E GK +H  V+  G++S ++++N 
Sbjct: 223 FHLFVEMRHEGISV---TDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNA 279

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----PERN 227
           LI+MYA C DL AA+ +F E    D+VSW SI+ G       EEA  +Y++M     + N
Sbjct: 280 LIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPN 339

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS-----WSALISCYEQNEMYEEALVLF 282
            +    +I      G V++   LF+ M +   +S     ++ L+  + ++   +EA  L 
Sbjct: 340 EVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLI 399

Query: 283 MNMIDHRVMVDEVVVVSVLSAC 304
             M    V  DE    ++LS+C
Sbjct: 400 RTM---PVNPDEPTWAALLSSC 418



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            K +HA I K GL  +  +  TL++ Y K G + +AL++F     +   +W +L+    +
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL--VDEGH----RHFNSMIQEHR 558
           +    ++L +   +  +G  P+   F  ++ AC ++G+  V +G     R F S   +  
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +  +S     ++D+  + G+      + +S+  S +  +W  ++    + G      R+ 
Sbjct: 142 VVKSS-----LIDMYAKFGLPDYGRAVFDSIS-SLNSISWTTMISGYARSGRKFEAFRLF 195

Query: 619 RK 620
           R+
Sbjct: 196 RQ 197


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/559 (42%), Positives = 340/559 (60%), Gaps = 38/559 (6%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSA 303
           +A R F E+P  + V  +A+ S Y +N +   +L LF  MI  D   +VDE   +   SA
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            A +       S+HAL  KIG E     +NA +                           
Sbjct: 62  SARVPDRGVTASLHALIAKIGFE-----RNAGV--------------------------V 90

Query: 364 NSMISGYLKCGS--VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-- 419
           N+M+  Y K GS  +E AR +FD M E+DVVSW++MI+ YAQ+   +E + L+ +M +  
Sbjct: 91  NTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 149

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI+ +   L +V+ AC H  A+  GK IH  + + GL+ N  +GT+++DMY K G V+ 
Sbjct: 150 GGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEM 209

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A   F   +EK + SW+A+I G+ M+G   ++LE+F+EMK+SG+ PN ITF+ VL AC H
Sbjct: 210 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 269

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL+DEG   +N+M QE  +E   +HYGCMVDLLGRAG L EA  LI+ M + PD A WG
Sbjct: 270 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 329

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC+ H + E+ E   ++L EL   + G++VLLSNI+A  G W DV  +R ++  R 
Sbjct: 330 ALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRR 389

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K PG S  E  G I+ F  GD++HPQ  EI + L+++ ++++  GY P+T  V  D+D
Sbjct: 390 IEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLD 449

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEKE+ L  HSEKLA+AF L+   P + I I+KNLR+C+DCHTA KFI++  +REI++R
Sbjct: 450 EEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIR 509

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK G CSC D+W
Sbjct: 510 DLQRFHHFKDGLCSCRDYW 528



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 195/447 (43%), Gaps = 114/447 (25%)

Query: 185 ARKLFDESPVLDLVSWNSILAGYV-------------------NADNVEEAKFIY----- 220
           AR+ FDE P  + V   ++ +GYV                   +A  V+EA  +      
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 221 NKMPERNIIAS-----------------NSMIVLFGRKG--NVAEACRLFKEMPKKDLVS 261
            ++P+R + AS                 N+M+  + + G  ++  A ++F  M ++D+VS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 262 WSALISCYEQNEMYEEALVLFMNMID--HRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           W+++I+ Y QN M  EA+ L+  M++    +  + V + +VL ACA+   ++ G  +H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            V++G+E  + +  +++ MYS CG +  A + F      +++SW++MI            
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMI------------ 229

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                              +GY  H +  E L +F EM+  G+RP+  T +SV++AC+H 
Sbjct: 230 -------------------TGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA 270

Query: 440 VALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
             LD+G+ W +A  ++ G++        ++D+  + GC+D                    
Sbjct: 271 GLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLD-------------------- 310

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
                         E +S +K+  V P+   +  +L ACR    V+        + +   
Sbjct: 311 --------------EAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD- 355

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEEL 585
              NS +Y  + ++   AGM K+ E +
Sbjct: 356 -ASNSGYYVLLSNIYAEAGMWKDVERI 381



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 48/352 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASAL 143
           + F  +  PN  I   M   Y++ N+   ++ L++ M+ ++    VD     +   ASA 
Sbjct: 5   RAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASAR 64

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWN 201
                    +H  + K GF+ +  V NT+++ YA  G  DL  ARK+FD +   D+VSWN
Sbjct: 65  VPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWN 123

Query: 202 SILAGYVNADNVEEAKFIYNKMP------------------------------------- 224
           S++A Y       EA  +Y+KM                                      
Sbjct: 124 SMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVV 183

Query: 225 ----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
               E N+    S++ ++ + G V  A R F+++ +K+++SWSA+I+ Y  +   +EAL 
Sbjct: 184 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 243

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           +F  M    +  + +  +SVL+AC++  ++  G    +A+  + GIE  +     ++ + 
Sbjct: 244 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLL 303

Query: 340 SSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
              G +  A  L  +     D   W +++S      +VE A      + E D
Sbjct: 304 GRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 355


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/565 (40%), Positives = 344/565 (60%), Gaps = 35/565 (6%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEV 295
           ++ + G   +  ++F EM  KDLV W+A+I+ YEQ E  EEAL+LF  M     ++ D +
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            VVSV SA   L  VK   +VH  A           + +LI                   
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYA----------FRKSLIE------------------ 92

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              +L   NS+++ + KCG+ EKAR +FD M+E+DV+SW++M+SGY Q+ Q +E L LF 
Sbjct: 93  ---ELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFD 149

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EM+    +P   T + ++SAC +L     G+  H +I  + ++I++ L   L+DMY K G
Sbjct: 150 EMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCG 209

Query: 476 CVDNALEVFHG--TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            ++ A+++F+G    E+   SWN LI G+ M+G   ++LE+FS M++ GV PN  TF  +
Sbjct: 210 DLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSI 269

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GL+DEG + F  M +   +    KH+ C+VD+LGRAG+L+EA +LI+ MP  P
Sbjct: 270 LSACSHAGLIDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPP 328

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
               WGALL ACK HG+ E+G+     L++L+P+H G++VL+SNI+A+  +W +V ++R 
Sbjct: 329 SDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQ 388

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M  +G+ K    SMIE    I  F   D+ +P  +E+   ++ +A ++K+ GY PD   
Sbjct: 389 DMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSC 448

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
              D+++E+KE  L  HSEKLA+AFG++ I P   IR+ KNLR+CNDCH+A K+IS  + 
Sbjct: 449 ALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQ 508

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           R+I+VRD +RFHHF+ G+CSC D+W
Sbjct: 509 RKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 157/377 (41%), Gaps = 78/377 (20%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE--------- 225
           MYA CG     RK+FDE    DLV W +++  Y  A+  EEA  ++ KM +         
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 226 -------------------------------RNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                            +   NS++ +  + GN  +A  +F  M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
            ++D++SW++++S Y QN    EAL+LF  M D       V  + ++SACA L     G 
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA--GHNLDLISWNSMISGYLK 372
             H   V   +E   NL NAL+ MY+ CG++  A  LF+       +  SWN +ISG   
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG--- 237

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
                                       Y  H    E L LF  MQ  G+ P+  T  S+
Sbjct: 238 ----------------------------YGMHGHGKEALELFSRMQEEGVEPNHFTFTSI 269

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH---GTEE 489
           +SAC+H   +D+G+   A +++  + +       ++DM  + G +  A ++         
Sbjct: 270 LSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPS 329

Query: 490 KGVSSWNALIIGFAMNG 506
            GV  W AL++   ++G
Sbjct: 330 DGV--WGALLLACKIHG 344



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 164/400 (41%), Gaps = 70/400 (17%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALR 144
           KIF  + + +   +  M+ AY Q   P++A+ L+K M     +  D+     +A A    
Sbjct: 13  KIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQL 72

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             V     +H +  +     ++ V N+++ M+  CG+   AR +FD     D++SWNS+L
Sbjct: 73  GDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSML 132

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIA---------------------------------- 230
           +GY       EA  ++++M + +                                     
Sbjct: 133 SGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRME 192

Query: 231 -----SNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFM 283
                SN+++ ++ + G++ +A  LF  +P  +++  SW+ LIS Y  +   +EAL LF 
Sbjct: 193 IDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFS 252

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M +  V  +     S+LSAC++  ++  G    A   ++ +         ++ M    G
Sbjct: 253 RMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAG 312

Query: 344 EITTAEKLFDAGHNLDLIS----------WNSM-----ISGYLKCGSVEKARALFDAMIE 388
            +  A          DLI           W ++     I G ++ G    +  L    +E
Sbjct: 313 LLQEA---------FDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL---QLE 360

Query: 389 KDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPDEA 427
            +   +  ++S  YA  +++ E   L  +M++ G++   A
Sbjct: 361 PNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAA 400


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/635 (37%), Positives = 361/635 (56%), Gaps = 34/635 (5%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           DV   N++I+    CGD+  A K+FDE P   +VSW +++ G      V++A+ ++ +MP
Sbjct: 96  DVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMP 155

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            ++I A N+M+  + + G V +A +LFK+MP+K+++SW+ +I   +QNE   EAL LF N
Sbjct: 156 VKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKN 215

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+   +         V++ACAN      GT VH   +K G             +Y    E
Sbjct: 216 MLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGF------------LYE---E 260

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
             TA                S+I+ Y  C   E +R +F  M+ + V  W+ ++SGY+ +
Sbjct: 261 YVTA----------------SLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLN 304

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
            +  + L++F EM  + I P+++T  S +++C+ L  LD GK IH    K GL   + +G
Sbjct: 305 RKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVG 364

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
            +L+ MY   G V++A+ VF    +K + SWN++I+G A +G    +  +F +M +    
Sbjct: 365 NSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKE 424

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAE 583
           P+EITF G+L AC H G + +G + F  +    + ++   +HY CMVD+LGR G LKEAE
Sbjct: 425 PDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAE 484

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           +LIESM + P+   W ALL AC+ H D + GE+    +  L       +VLLSNI+AS G
Sbjct: 485 KLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAG 544

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RW  V ++R  M ++G++K PG S +   G  HEF +GDR  P    I   L+ + +KLK
Sbjct: 545 RWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDR--PHCLRIFEKLEFLREKLK 602

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY PD      D++ E+KE  L+ HSE+LAIAFGLI     + + +MKNLR+C DCHT
Sbjct: 603 ELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHT 662

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K ISR    +IV+RD  RFHHFK+G CSC D+W
Sbjct: 663 VIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 206/428 (48%), Gaps = 47/428 (10%)

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS-CYEQ 271
           ++EA+ +++++P  ++     MI  + R   + +A  LF EMP +D+VSW+++IS C E 
Sbjct: 51  LDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVEC 110

Query: 272 NEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            +            ID  V M DE+   SV+S                            
Sbjct: 111 GD------------IDTAVKMFDEMPERSVVS---------------------------- 130

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
              A+++     G +  AE+LF      D+ +WN+M+ GYL+ G V+ A  LF  M  K+
Sbjct: 131 -WTAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKN 189

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           V+SW+TMI G  Q+++  E L+LF  M    I+    T   VI+AC +  A   G  +H 
Sbjct: 190 VISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHG 249

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           +I K+G      +  +LI +Y      +++ +VF     + V+ W AL+ G+++N   + 
Sbjct: 250 FIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHED 309

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +L +FSEM ++ + PN+ TF   L +C  +G +D G +  + +  +  L   +     +V
Sbjct: 310 ALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWG-KEIHGVAVKLGLGTVAFVGNSLV 368

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL--QPDH 628
            +   +G + +A  +   +     + +W +++  C +HG  +    +  +++ L  +PD 
Sbjct: 369 VMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDE 427

Query: 629 DGFHVLLS 636
             F  LLS
Sbjct: 428 ITFTGLLS 435



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 180/408 (44%), Gaps = 45/408 (11%)

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
           L F ++  + K+F  +   N   + TM+    Q     +A+ L+K ML   +   + T+ 
Sbjct: 170 LQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFT 229

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            +  A A   +   G  +H  ++K+GF  + YV  +LI +YA C     +RK+F E    
Sbjct: 230 CVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHE 289

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS------------------ 231
            +  W ++L+GY      E+A  ++++M      P ++  AS                  
Sbjct: 290 KVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIH 349

Query: 232 ---------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                          NS++V++   GNV +A  +F E+ KK +VSW+++I    Q+   +
Sbjct: 350 GVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGK 409

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIG-IECYINLQNA 334
            A V+F  MI      DE+    +LSAC++   ++ G  + + ++  +  I+  I     
Sbjct: 410 WAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTC 469

Query: 335 LIHMYSSCGEITTAEKLFDAG-HNLDLISWNSMISGYLKCGSV---EKARALFDAMIEKD 390
           ++ +   CGE+  AEKL ++     + + W +++S       V   EKA A    +  K 
Sbjct: 470 MVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKS 529

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
             ++  + + YA   ++S    L ++M+  GI     +   VI    H
Sbjct: 530 SAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKH 577



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 134/329 (40%), Gaps = 46/329 (13%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +I  +L    +++AR +FD +    V  ++ MISGY + ++  + L+LF EM       D
Sbjct: 41  LICNHLLNRRLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLR----D 96

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGL-----KINSILGTTLIDM---------- 470
             +  S+IS C     +D    +   + +  +      +N      ++D           
Sbjct: 97  VVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPV 156

Query: 471 ------------YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
                       Y++ G VD+AL++F     K V SW  +I G   N  + ++L +F  M
Sbjct: 157 KDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNM 216

Query: 519 KKSGVTPNEITFVGVLGACR-----HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
            +  +     TF  V+ AC      HMG    G    +  + E  +  +      ++ L 
Sbjct: 217 LRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTAS------LITLY 270

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGF 631
                 +++ ++   M +   VA W ALL     +  HE    V  +++   + P+   F
Sbjct: 271 ANCKRTEDSRKVFGEM-VHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTF 329

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
              L++  A  G  D   E+ G+ V+ G+
Sbjct: 330 ASGLNSCSA-LGTLDWGKEIHGVAVKLGL 357



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 140/323 (43%), Gaps = 23/323 (7%)

Query: 42  SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           +F   TQ+   +I +G + + +  + LI    +         S K+F  +      ++  
Sbjct: 240 AFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCK---RTEDSRKVFGEMVHEKVAVWTA 296

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++  Y      + A+ ++  M+ N++  +  T+     + +   ++  GK IH   +K G
Sbjct: 297 LLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLG 356

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             +  +V N+L+ MY+  G+++ A  +F E     +VSWNSI+ G       + A  I+ 
Sbjct: 357 LGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFG 416

Query: 222 KM----PERNIIASNSMIVLFGRKGNVAEACRLFKEMPK------KDLVSWSALISCYEQ 271
           +M     E + I    ++      G + +  +LF  +        + +  ++ ++    +
Sbjct: 417 QMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGR 476

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE---CY 328
               +EA  L  +M+   V  +E+V +++LSAC   + V  G    A    +  +    Y
Sbjct: 477 CGELKEAEKLIESMV---VKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAY 533

Query: 329 INLQNALIHMYSSCGEITTAEKL 351
           + L N    +Y+S G  ++  KL
Sbjct: 534 VLLSN----IYASAGRWSSVSKL 552


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/812 (31%), Positives = 422/812 (51%), Gaps = 76/812 (9%)

Query: 27  TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           +++L I    L K +S  +  QI+ Q++ +GL +     + LI     L     + Y+  
Sbjct: 162 SMSLVISSCGLLKDESLGR--QIIGQVVKSGLESKLAVENSLISM---LGSMGNVDYANY 216

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  +   +   +N++  AY Q    +++  ++ LM   +  V++ T   L         
Sbjct: 217 IFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDH 276

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ IH  V+K GFDS V V NTL+ MYA  G    A  +F + P  DL+SWNS++A 
Sbjct: 277 QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMAS 336

Query: 207 YVN-----------------------------------ADNVEEAKFIYNKMPER----N 227
           +VN                                    D  E+ + ++  +       N
Sbjct: 337 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYN 396

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
            I  N+++ ++G+ G ++E+ R+  +MP++D+V+W+ALI  Y ++E  ++AL  F  M  
Sbjct: 397 QIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRV 456

Query: 288 HRVMVDEVVVVSVLSACA-NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
             V  + + VVSVLSAC     +++ G  +HA  V  G E   +++N+LI MY+      
Sbjct: 457 EGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA------ 510

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG +  ++ LF+ +  +++++W+ M++  A H  
Sbjct: 511 -------------------------KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 545

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L L  +M+  G+  D+ +    +SA   L  L++G+ +H    K G + +S +   
Sbjct: 546 GEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNA 605

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
             DMY K G +   +++   +  + + SWN LI     +G  ++    F EM + G+ P 
Sbjct: 606 AADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPG 665

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TFV +L AC H GLVD+G  +++ + ++  LEP  +H  C++DLLGR+G L EAE  I
Sbjct: 666 HVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFI 725

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MPM P+   W +LL +CK HG+ + G +    L +L+P+ D  +VL SN+ A+ GRW+
Sbjct: 726 SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWE 785

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           DV  VR  M  + + K   CS ++    +  F  GDRTHPQ  EI   L+++ K +K  G
Sbjct: 786 DVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESG 845

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  DT +   D D+E+KE  L+ HSE+LA+A+ L++    + +RI KNLRIC+DCH+  K
Sbjct: 846 YVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYK 905

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           F+SR   R IV+RD++RFHHF+ G CSC D+W
Sbjct: 906 FVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 157/640 (24%), Positives = 302/640 (47%), Gaps = 86/640 (13%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F++  Q+   +  +GL++D + ++ ++        +  +S S K+F  +   N   + ++
Sbjct: 75  FREGVQVHGFVAKSGLLSDVYVSTAILHLYG---VYGLVSCSRKVFEEMPDRNVVSWTSL 131

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           M  Y  +  P++ I +YK M    VG +  +  L+  +  L      G+ I   V+K+G 
Sbjct: 132 MVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGL 191

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +S + V N+LI+M    G++  A  +FD+    D +SWNSI A Y    ++EE+  I++ 
Sbjct: 192 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 251

Query: 223 M----PERN-----------------------------------IIASNSMIVLFGRKGN 243
           M     E N                                   +   N+++ ++   G 
Sbjct: 252 MRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 311

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
             EA  +FK+MP KDL+SW++L++ +  +    +AL L  +MI     V+ V   S L+A
Sbjct: 312 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAA 371

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C      + G  +H L V  G+     + NAL+ MY   GE++ + ++       D+++W
Sbjct: 372 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 431

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N++I G                               YA+ +   + L+ F  M+  G+ 
Sbjct: 432 NALIGG-------------------------------YAEDEDPDKALAAFQTMRVEGVS 460

Query: 424 PDEATLVSVISACTHLVA---LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            +  T+VSV+SAC  L+    L++GK +HAYI   G + +  +  +LI MY K G + ++
Sbjct: 461 SNYITVVSVLSAC--LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSS 518

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F+G + + + +WNA++   A +G  ++ L++ S+M+  GV+ ++ +F   L A   +
Sbjct: 519 QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKL 578

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATW 598
            +++EG +  + +  +   E +S  +    D+  + G   E  E+++ +P S +  + +W
Sbjct: 579 AVLEEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSW 634

Query: 599 GALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
             L+ A  +HG  E       +++E+  +P H  F  LL+
Sbjct: 635 NILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLT 674



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 202/476 (42%), Gaps = 73/476 (15%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNI 228
           MY   G +  AR LFD  PV + VSWN++++G V      E    + KM      P   +
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 229 IA----------------------------------SNSMIVLFGRKGNVAEACRLFKEM 254
           IA                                  S +++ L+G  G V+ + ++F+EM
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P +++VSW++L+  Y      EE + ++  M    V  +E  +  V+S+C  L     G 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +    VK G+E  + ++N+LI M  S G +  A  +FD     D ISWNS+ + Y + G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            +E++  +F  M                 HD+ + T                 T+ +++S
Sbjct: 241 HIEESFRIFSLMRR--------------FHDEVNST-----------------TVSTLLS 269

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
              H+     G+ IH  + K G      +  TL+ MY   G    A  VF     K + S
Sbjct: 270 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 329

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN+L+  F  +G +  +L +   M  SG + N +TF   L AC      ++G R  + ++
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLV 388

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
               L  N      +V + G+ G + E+  ++  MP   DV  W AL+G   +  D
Sbjct: 389 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNALIGGYAEDED 443



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 128/251 (50%), Gaps = 7/251 (2%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K G V+ AR LFD M  ++ VSW+TM+SG  +   + E +  F +M   GI+P    +
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 430 VSVISACTHLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
            S+++AC    ++  +G  +H ++ K+GL  +  + T ++ +Y   G V  + +VF    
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV-DEG- 546
           ++ V SW +L++G++  G  ++ ++++  M+  GV  NE +   V+ +C   GL+ DE  
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESL 178

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            R     + +  LE        ++ +LG  G +  A  + + M    D  +W ++  A  
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYA 237

Query: 607 KHGDHEMGERV 617
           ++G  E   R+
Sbjct: 238 QNGHIEESFRI 248



 Score = 47.0 bits (110), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 1/143 (0%)

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G V  A  +F     +   SWN ++ G    GL  + +E F +M   G+ P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
              ++ AC   G +       +  + +  L  +      ++ L G  G++  + ++ E M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 590 PMSPDVATWGALLGACKKHGDHE 612
           P   +V +W +L+      G+ E
Sbjct: 121 P-DRNVVSWTSLMVGYSDKGEPE 142


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/545 (42%), Positives = 319/545 (58%), Gaps = 30/545 (5%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MP    VSW+ALI+ Y       EA+ +        +  D    V VL+ACA +  ++ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            +V A A +                     E   AE +F A   LDL         Y+KC
Sbjct: 61  EAVWAAARQ---------------------EEGVAESVFVATAALDL---------YVKC 90

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +EKAR++FD M  +D V+W  M+ GYA +    E L LF  MQ  G +PD  T+V  +
Sbjct: 91  GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL 150

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SACT L ALD G+     +  + +  N +LGT LIDMY K G    A  VF    E+ + 
Sbjct: 151 SACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
            WNA+I+G  M G    +  +  +MKKSGV  N+ TF+G+L +C H GLV++G ++F++M
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNM 270

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
              +R+ P  +HYGCMVDL  RAG+L+EA +LI  MPM  +   WGALLG CK H + ++
Sbjct: 271 THVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADL 330

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
            E   ++L+ L+P + G +V+LSNI+++ GRW+D  ++R  M  +G+ K+P  S +E +G
Sbjct: 331 AEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDG 390

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +H+F  GD +HP  ++I   LDE+  ++K  GY P T  V FD++ EEKE TL  HSEK
Sbjct: 391 KVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEK 450

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           +AIAF LIT  P   IR+ KNLR+C DCH+A K ISR   REIVVRD +RFH F+ G CS
Sbjct: 451 IAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCS 510

Query: 794 CMDFW 798
           C D+W
Sbjct: 511 CNDYW 515



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 181/467 (38%), Gaps = 117/467 (25%)

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRK 241
            +A R L   + V DL +  ++ A     + V E+ F+           + + + L+ + 
Sbjct: 42  FTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFV-----------ATAALDLYVKC 90

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G + +A  +F EM  +D V+W A++  Y  N    EAL LF  M       D   VV  L
Sbjct: 91  GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL 150

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           SAC  L  +  G     +     +     L  ALI MY+ CG  + A  +F      D+I
Sbjct: 151 SACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
            WN+MI G                              G   H++ +   +L  +M+  G
Sbjct: 211 VWNAMILGL-----------------------------GMTGHEKIA--FALVGQMKKSG 239

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           ++ ++ T + ++ +CTH                                    G V++  
Sbjct: 240 VKLNDNTFIGLLCSCTH-----------------------------------TGLVNDGR 264

Query: 482 EVFHGTE-----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + FH           +  +  ++  F+  GL +++ ++  +M    +  N + +  +LG 
Sbjct: 265 QYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMP---MLANAVVWGALLGG 321

Query: 537 CRHMGLVDEGHRHFNSMIQEH------RLEP-NSKHYGCMVDLLGRAGMLKEAEEL---- 585
           C+          H N+ + EH      RLEP NS +Y  + ++   +G  ++A +L    
Sbjct: 322 CK---------IHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEM 372

Query: 586 ----IESMPMSPDVATWGALLGACKKH--GD--HEMGERVGRKLVEL 624
               IE +P S    +W  L G   K   GD  H + +++  KL EL
Sbjct: 373 KAKGIEKVPAS----SWVELDGKVHKFYVGDDSHPLSDKIYAKLDEL 415



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/382 (18%), Positives = 156/382 (40%), Gaps = 49/382 (12%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   +  ++ AY+      +AI + +    + +  D++T   +  A A    +  G+ +
Sbjct: 4   PSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAV 63

Query: 154 HDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
                +  G    V+V    +++Y  CG++  AR +FDE    D V+W +++ GY +  +
Sbjct: 64  WAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGH 123

Query: 213 VEEAKFIYNKM------PE---------------------------------RNIIASNS 233
             EA  ++  M      P+                                  N +   +
Sbjct: 124 PREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTA 183

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ + G+ +EA  +F++M ++D++ W+A+I         + A  L   M    V ++
Sbjct: 184 LIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLN 243

Query: 294 EVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           +   + +L +C +  +V  G    H +     I   I     ++ ++S  G +  A +L 
Sbjct: 244 DNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLI 303

Query: 353 -DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST----MISG-YAQHDQ 406
            D     + + W +++ G     + + A      +I  +   W++    M+S  Y+   +
Sbjct: 304 GDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLE--PWNSGNYVMLSNIYSNSGR 361

Query: 407 FSETLSLFMEMQHHGIRPDEAT 428
           + +   L +EM+  GI    A+
Sbjct: 362 WEDAAKLRLEMKAKGIEKVPAS 383


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/791 (32%), Positives = 412/791 (52%), Gaps = 74/791 (9%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            QI+ Q++ +GL +     + LI     L     + Y+  IF  +   +   +N++  AY 
Sbjct: 271  QIIGQVVKSGLESKLAVENSLISM---LGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 327

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
            Q    +++  ++ LM   +  V++ T   L            G+ IH  V+K GFDS V 
Sbjct: 328  QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 387

Query: 168  VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN------------------ 209
            V NTL+ MYA  G    A  +F + P  DL+SWNS++A +VN                  
Sbjct: 388  VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 447

Query: 210  -----------------ADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEAC 248
                              D  E+ + ++  +       N I  N+++ ++G+ G ++E+ 
Sbjct: 448  KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 507

Query: 249  RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA-NL 307
            R+  +MP++D+V+W+ALI  Y ++E  ++AL  F  M    V  + + VVSVLSAC    
Sbjct: 508  RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 567

Query: 308  TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             +++ G  +HA  V  G E   +++N+LI MY+                           
Sbjct: 568  DLLERGKPLHAYIVSAGFESDEHVKNSLITMYA--------------------------- 600

Query: 368  SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                KCG +  ++ LF+ +  +++++W+ M++  A H    E L L  +M+  G+  D+ 
Sbjct: 601  ----KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQF 656

Query: 428  TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +    +SA   L  L++G+ +H    K G + +S +     DMY K G +   +++   +
Sbjct: 657  SFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPS 716

Query: 488  EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
              + + SWN LI     +G  ++    F EM + G+ P  +TFV +L AC H GLVD+G 
Sbjct: 717  VNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 776

Query: 548  RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             +++ + ++  LEP  +H  C++DLLGR+G L EAE  I  MPM P+   W +LL +CK 
Sbjct: 777  AYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKI 836

Query: 608  HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
            HG+ + G +    L +L+P+ D  +VL SN+ A+ GRW+DV  VR  M  + + K   CS
Sbjct: 837  HGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACS 896

Query: 668  MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
             ++    +  F  GDRTHPQ  EI   L+++ K +K  GY  DT +   D D+E+KE  L
Sbjct: 897  WVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNL 956

Query: 728  FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            + HSE+LA+A+ L++    + +RI KNLRIC+DCH+  KF+SR   R IV+RD++RFHHF
Sbjct: 957  WNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHF 1016

Query: 788  KHGSCSCMDFW 798
            + G CSC D+W
Sbjct: 1017 ERGLCSCKDYW 1027



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 262/572 (45%), Gaps = 54/572 (9%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   +NTMM   ++  +  + +  ++ M +  +   ++    L  A     S
Sbjct: 129 LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGS 188

Query: 147 VF-EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +F EG  +H  V K+G  SDVYV+  ++++Y V G +S +RK+F+E P  ++VSW S++ 
Sbjct: 189 MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 248

Query: 206 GYVNADNVEEAKFIYNKMP--------------ERNIIASNSMIVLFGRKGNVAEACRLF 251
           GY +    EE   IY                  E  +   NS+I + G  GNV  A  +F
Sbjct: 249 GYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIF 308

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            +M ++D +SW+++ + Y QN   EE+  +F  M      V+   V ++LS   ++   K
Sbjct: 309 DQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQK 368

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H L VK+G +  + + N L+ MY+  G    A  +F      DLISWNS+++ + 
Sbjct: 369 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASF- 427

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
               V   R+L                          + L L   M   G   +  T  S
Sbjct: 428 ----VNDGRSL--------------------------DALGLLCSMISSGKSVNYVTFTS 457

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            ++AC      ++G+ +H  +  +GL  N I+G  L+ MY K+G +  +  V      + 
Sbjct: 458 ALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRD 517

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V +WNALI G+A +   DK+L  F  M+  GV+ N IT V VL AC   G + E  +  +
Sbjct: 518 VVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLH 577

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           + I     E +      ++ +  + G L  +++L   +  + ++ TW A+L A   HG  
Sbjct: 578 AYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGH- 635

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
                 G ++++L      F V L     S+G
Sbjct: 636 ------GEEVLKLVSKMRSFGVSLDQFSFSEG 661



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 153/640 (23%), Positives = 294/640 (45%), Gaps = 111/640 (17%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F++  Q+   +  +GL++D + ++ ++        +  +S S K+F  +   N   + ++
Sbjct: 190 FREGVQVHGFVAKSGLLSDVYVSTAILHLYG---VYGLVSCSRKVFEEMPDRNVVSWTSL 246

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           M  Y  +  P++ I +YK         D                   G+ I   V+K+G 
Sbjct: 247 MVGYSDKGEPEEVIDIYK---------DESL----------------GRQIIGQVVKSGL 281

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +S + V N+LI+M    G++  A  +FD+    D +SWNSI A Y    ++EE+  I++ 
Sbjct: 282 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 341

Query: 223 M----PERN-----------------------------------IIASNSMIVLFGRKGN 243
           M     E N                                   +   N+++ ++   G 
Sbjct: 342 MRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 401

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
             EA  +FK+MP KDL+SW++L++ +  +    +AL L  +MI     V+ V   S L+A
Sbjct: 402 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAA 461

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C      + G  +H L V  G+     + NAL+ MY   GE++ + ++       D+++W
Sbjct: 462 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 521

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N++I G                               YA+ +   + L+ F  M+  G+ 
Sbjct: 522 NALIGG-------------------------------YAEDEDPDKALAAFQTMRVEGVS 550

Query: 424 PDEATLVSVISACTHLVA---LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            +  T+VSV+SAC  L+    L++GK +HAYI   G + +  +  +LI MY K G + ++
Sbjct: 551 SNYITVVSVLSAC--LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSS 608

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F+G + + + +WNA++   A +G  ++ L++ S+M+  GV+ ++ +F   L A   +
Sbjct: 609 QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKL 668

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATW 598
            +++EG +  + +  +   E +S  +    D+  + G   E  E+++ +P S +  + +W
Sbjct: 669 AVLEEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSW 724

Query: 599 GALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
             L+ A  +HG  E       +++E+  +P H  F  LL+
Sbjct: 725 NILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLT 764



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 207/501 (41%), Gaps = 98/501 (19%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H   +K      V   NTLINMY   G +  AR LFD  PV + VSWN++++G V 
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 210 ADNVEEAKFIYNKM------PERNIIA--------------------------------- 230
                E    + KM      P   +IA                                 
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 231 -SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S +++ L+G  G V+ + ++F+EMP +++VSW++L+  Y      EE + ++ +    R
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGR 270

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
            ++ +V                         VK G+E  + ++N+LI M  S G +  A 
Sbjct: 271 QIIGQV-------------------------VKSGLESKLAVENSLISMLGSMGNVDYAN 305

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD     D ISWNS+ + Y + G +E++  +F  M                 HD+ + 
Sbjct: 306 YIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRR--------------FHDEVNS 351

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           T                 T+ +++S   H+     G+ IH  + K G      +  TL+ 
Sbjct: 352 T-----------------TVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLR 394

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY   G    A  VF     K + SWN+L+  F  +G +  +L +   M  SG + N +T
Sbjct: 395 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 454

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F   L AC      ++G R  + ++    L  N      +V + G+ G + E+  ++  M
Sbjct: 455 FTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM 513

Query: 590 PMSPDVATWGALLGACKKHGD 610
           P   DV  W AL+G   +  D
Sbjct: 514 PRR-DVVAWNALIGGYAEDED 533


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/510 (44%), Positives = 307/510 (60%), Gaps = 35/510 (6%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D      VL ACA L   + G  +H+L  K+G +  + +QN LIH Y          
Sbjct: 83  VSPDHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGC-------- 131

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                                  CG ++ A  +F+ M E+D+VSWS+MI+ +A++    E
Sbjct: 132 -----------------------CGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 410 TLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            L+LF  MQ  G ++PDE  ++SV+SA + L  L+ GKWI  +I +NGL+    LGT L+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DM+ + GC++ ++ VF    E+ V +W ALI G A++G + ++L MF EM+  G  P+ +
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF GVL AC H GLV EG   F S+  E+ +EP  +HYGCMVDLLGRAG+L EA + ++ 
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDG 348

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+ P+   W  LLGAC  H   E+ E+V  K+ EL   HDG +VLLSN++   GRW + 
Sbjct: 349 MPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEK 408

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR  M  + + K PGCS+I  N +IHEF+AGD  HPQ   I   L  M   LK+ GY 
Sbjct: 409 AGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYT 468

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PD   V FDI++EEKE+TL  HSEKLA+AF L+       IR+MKNLRIC+DCH   K+ 
Sbjct: 469 PDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYA 528

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S  F+REI++RDR+RFHHF  GSCSC D+W
Sbjct: 529 SDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 175/385 (45%), Gaps = 47/385 (12%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ ++++ TG      A  RL+       P   +SY+  IF  +  P+ F FNT++RA+ 
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAP-ASLSYARSIFDLIAFPDTFAFNTIIRAHA 64

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
             +         K+ +   V  D++T+P + +A A RL    G  +H  + K GFDSDVY
Sbjct: 65  DSSPSFSLSLFSKMAMAG-VSPDHFTFPFVLKACA-RLQT--GLDLHSLLFKLGFDSDVY 120

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           V N LI+ Y  CG L  A K+F+E P  DLVSW+S++A +       EA  ++ +M    
Sbjct: 121 VQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVG 180

Query: 224 ---PERNIIAS---------------------------------NSMIVLFGRKGNVAEA 247
              P+  I+ S                                  +++ +F R G + E+
Sbjct: 181 TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEES 240

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            R+F EM ++++++W+ALI+    +    EAL +F  M +H    D V    VL AC++ 
Sbjct: 241 MRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 308 TVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNS 365
            +V  G  V  ++  + G+E        ++ +    G +  A K  D      + I W +
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 366 MISGYLKCGSVEKARALFDAMIEKD 390
           ++   +    +E A  + + + E D
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELD 385



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
            S+  AR++FD +   D  +++T+I  +A             +M   G+ PD  T   V+
Sbjct: 36  ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMAMAGVSPDHFTFPFVL 94

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC  L     G  +H+ + K G   +  +   LI  Y   G +D AL+VF    E+ + 
Sbjct: 95  KACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLV 151

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
           SW+++I  FA NG   ++L +F  M+  G V P+E+  + V+ A   +G ++ G +    
Sbjct: 152 SWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRG 210

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            I  + LE        +VD+  R G ++E+  + + M    +V TW AL+     HG   
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHGRSA 269

Query: 613 MGERVGRKLVE--LQPDHDGF 631
              R+  ++     QPDH  F
Sbjct: 270 EALRMFYEMRNHGFQPDHVTF 290


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/775 (33%), Positives = 402/775 (51%), Gaps = 92/775 (11%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P+   ++ ++  Y+Q    ++A+  Y  M       + +T+  + +  +L  ++  GK I
Sbjct: 111 PDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQI 170

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H    +    +++       N +++   L+A   L DE+       +   + GY+     
Sbjct: 171 H----RVALVTEMISTGISPNEFSLSTVLNACAGLEDEN-------YGMKVHGYL----- 214

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
              K  Y+  P     ++N+++ ++ + G    A  +F E+PK D+VSW+A+I+    +E
Sbjct: 215 --IKLGYDSDP----FSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE------- 326
             + AL L   M  +RV      + S L ACA + +VK G  +H+  +K+ +E       
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 327 --------CY----------------INLQNALIHMYSSCGEITTAEKLF---------- 352
                   C                 + + N++I  YS+CG    A  LF          
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 353 -----------------------------DAGHNLDLISWNSMISGYLKCGSVEKARALF 383
                                         +G+  D    NS++  Y KC  +E A  +F
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
           +    +D+V++++MI+ Y+Q+    E L +++ MQ   I+PD     S+ +AC +L A +
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYE 508

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           QGK IH ++ K GL  +   G +L++MY K G +D+A  +F+    +G+ SW+A+I G A
Sbjct: 509 QGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLA 568

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            +G   K+L++F +M K+G+ PN IT V VL AC H GLV E  R F  M +   + P  
Sbjct: 569 QHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQ 628

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HY CMVD+LGR G L EA  L++ MP     A WGALLGA + H + E+G      L+ 
Sbjct: 629 EHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLT 688

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L+P+  G H+LL+NI+AS G WD+V +VR  M    V K PG S IE    ++ F+ GDR
Sbjct: 689 LEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDR 748

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP+  EI   LD++ ++L   GY P       D++Q EKE  L+ HSEKLA+AFGLI  
Sbjct: 749 SHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIAT 808

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P  PIR+ KNLR+C DCHTA KFIS+   REI+VRD +RFHHF+ GSCSC D+W
Sbjct: 809 PPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 150/606 (24%), Positives = 260/606 (42%), Gaps = 108/606 (17%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLSVFEGKLIHD 155
           FI NT ++ YI    P     +   +L+++    + +YP LL Q +A +  V  G  IH 
Sbjct: 20  FIVNTSVK-YISNLRPND---VSGFILDSSSNPSSISYPKLLLQFTASK-DVSSGMAIHA 74

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            +++      + + N L+N+Y+ C     ARKL  +S   DLVSW+++++GYV     EE
Sbjct: 75  RIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEE 131

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGN------VAEACRLFKEMPKKDLVSWSALISCY 269
           A   Y +M             L G KGN      V + C L + +     +   AL++  
Sbjct: 132 ALLTYYEM------------YLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVT-- 177

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
                          MI   +  +E  + +VL+ACA L     G  VH   +K+G +   
Sbjct: 178 --------------EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDP 223

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
              NAL+ MY+  G    A  +F      D++SWN++I+G +                  
Sbjct: 224 FSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCV------------------ 265

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                         H++    L L  +M  + + P   TL S + AC  +  +  G+ +H
Sbjct: 266 -------------LHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLH 312

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           + + K  ++ +S +G  LIDMY K G + +A  VF     K V  WN++I G++  G   
Sbjct: 313 SALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDI 372

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVL---------GACR--HMGLVDEGHRH----FNSMI 554
           +++ +F+ M K G+  N+ T   +L         G C   H   +  G+++     NS++
Sbjct: 373 EAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLL 432

Query: 555 QEHR----LEPNSK-----------HYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVA 596
             +     LE  +K            Y  M+    + G+ +EA ++   ++   + PD  
Sbjct: 433 DSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAF 492

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV-LLSNIHASKGRWDDVLEVRGMM 655
            + +L  AC     +E G+++   +++     D F    L N++A  G  DD   +   +
Sbjct: 493 IFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEI 552

Query: 656 VRRGVV 661
             RG+V
Sbjct: 553 SWRGIV 558


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/528 (42%), Positives = 317/528 (60%), Gaps = 22/528 (4%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D V +V+VL ACA++     G +VH +AV+ G    + + NAL+ MY+ CG +  A K+F
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQFS 408
           D     D++SWN+M++GY + G  E A  LF+ M    IE +VVSWS +I+ +AQ     
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131

Query: 409 ETLSLFMEMQHHG-----------------IRPDEATLVSVISACTHLVALDQGKWIHAY 451
           ETL +F EMQH                   ++P+  T+   + AC  L AL  G+ IHAY
Sbjct: 132 ETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAY 191

Query: 452 IRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           I +N      + +   LIDMY K G +D A  VF   ++K   SW +L+ G+ M+G   +
Sbjct: 192 ILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKE 251

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+F EM++ G+ P+ +T + VL AC H G++D+G   FNSM +E  + P  +HY CMV
Sbjct: 252 ALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMV 311

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGRAG L EA ELIE M M P    W ALL  C+ H + E+GE   ++L+EL  ++DG
Sbjct: 312 DLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDG 371

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            + LLSNI+A+  RW DV  VR +M   G+ K PGCS ++       F   D+THPQ  +
Sbjct: 372 SYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQ 431

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           I  +L  + +++K+ GY P+T     D+D EEK   LF HSEKLA+A+G++  +P  PIR
Sbjct: 432 IYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIR 491

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I KNLR+C DCH A  +IS   D EI++RD  RFHHFK GSCSC  +W
Sbjct: 492 ITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 56/361 (15%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H   +++G   D++V N L++MYA CG +  A K+FD     D+VSWN+++ GY  
Sbjct: 32  GKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQ 91

Query: 210 ADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
               E+A  ++ KM E NI    ++ +++I  F ++G   E   +F+EM           
Sbjct: 92  IGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREM----------- 140

Query: 266 ISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
                Q+    +AL LF  M   D  V  +   +   L ACA L  ++ G  +HA  ++ 
Sbjct: 141 -----QHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRN 195

Query: 324 GIE-CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
             +  ++ + N LI MY+  G+I  A  +FD     + +SW S+++G             
Sbjct: 196 HFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTG------------- 242

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                             Y  H +  E L +F EM+  G++PD  TL+ V+ AC+H   +
Sbjct: 243 ------------------YGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMI 284

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALII 500
           DQG ++ ++  ++ G+         ++D+  + G ++ A+E+  G + E     W AL+ 
Sbjct: 285 DQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLS 344

Query: 501 G 501
           G
Sbjct: 345 G 345



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           +RPD  +LV+V+ AC  + A   GK +H    ++G   +  +G  L+DMY K G VD A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF   +EK V SWNA++ G++  G  + +L +F +M++  +  N +++  V+ A    G
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 542 L 542
           L
Sbjct: 129 L 129


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/702 (34%), Positives = 380/702 (54%), Gaps = 75/702 (10%)

Query: 138 AQASALRLSVFEGKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
            +A  LRL    G+ +H   VL     +  ++ N LI MY+ C D+ +A +LFD  P  +
Sbjct: 28  GRAGDLRL----GRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS------------------------- 231
           LVSW ++++G        +A   ++ M    ++ +                         
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHC 143

Query: 232 --------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                         +++  ++ + G + EACR+F +MP+KD V+W+A+I  Y +N   E 
Sbjct: 144 VGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEA 203

Query: 278 ALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           A++ F +M  +  V  D+ V+ SVLSA   L       ++H+  +K G E  + ++NAL 
Sbjct: 204 AVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALT 263

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+   ++  A ++      +D  S N                          VVS ++
Sbjct: 264 DMYAKAADMDNAARVV----KIDQGSLN--------------------------VVSATS 293

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +I GY + D   + L +F+E++  G+ P+E T  S+I  C     L+QG  +HA + K  
Sbjct: 294 LIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTS 353

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L  +S + +TL+DMY K G +  ++++F   E     +WNA I   A +G   +++  F 
Sbjct: 354 LISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFD 413

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            M  SG+ PN ITFV +L AC H GLVDEG ++F SM   H +EP  +HY C++D+ GRA
Sbjct: 414 RMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRA 473

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G L EAE+ I  MP+ P+   W +LLGAC+  G+ E+GE     +++L+PD+ G HV LS
Sbjct: 474 GRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLS 533

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
            I+AS G+W+DV  VR +M    + K+PG S +++N   H F + D +HPQ  +I   L+
Sbjct: 534 GIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLE 593

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           E+ +++K EGY PDT  +  +++   K+  L  HSE++A+AF LI++    PI + KNLR
Sbjct: 594 ELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLR 653

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCH+A KFIS+  +R+I+VRD  RFHHF  G CSC D+W
Sbjct: 654 ICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 129/578 (22%), Positives = 244/578 (42%), Gaps = 116/578 (20%)

Query: 51  SQMILTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
           ++++L+G  A  TF A+ LI   +      ++  + ++F  +  PN   + T++    Q 
Sbjct: 41  ARLVLSGAAAASTFLANHLITMYSHC---ADVPSAVRLFDAMPRPNLVSWTTLVSGLTQN 97

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
           ++ + A+  +  M    +    +     A+A+A   +   G  +H   ++ GFD++++V 
Sbjct: 98  SMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVA 157

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----- 224
           + L +MY+  G L  A ++FD+ P  D V+W +++ GY    N+E A   +  M      
Sbjct: 158 SNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLV 217

Query: 225 -----------------------------------ERNIIASNSMIVLFGRKGNVAEACR 249
                                              E+ +   N++  ++ +  ++  A R
Sbjct: 218 GADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAAR 277

Query: 250 LFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           + K +    ++VS ++LI  Y + +  E+AL++F+ +    V  +E    S++  CA   
Sbjct: 278 VVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQA 337

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           +++ G  +HA  +K  +     + + L+ MY  CG I+ + +LF        I+WN+   
Sbjct: 338 LLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNA--- 394

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
                                        I+  AQH    E +  F  M   GIRP+  T
Sbjct: 395 ----------------------------AINVLAQHGHGREAIRAFDRMTSSGIRPNHIT 426

Query: 429 LVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            VS+++AC+H   +D+G K+ ++    +G++      + +IDMY + G +D A E F G 
Sbjct: 427 FVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEA-EKFIG- 484

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
                                        EM    V PN   +  +LGACR  G  + G 
Sbjct: 485 -----------------------------EMP---VKPNAYGWCSLLGACRMRGNKELGE 512

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
              ++M+   +LEP++   G  V L G    L + E++
Sbjct: 513 IAADNMM---KLEPDNT--GVHVSLSGIYASLGQWEDV 545



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 5/183 (2%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            +Q  Q+ +++I T LI+D+F +S L+           +S S ++F  +E      +N  
Sbjct: 339 LEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGL---ISLSIQLFKEIEYHTDIAWNAA 395

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG-KLIHDHVLKAG 161
           +    Q    ++AI  +  M ++ +  ++ T+  L  A +    V EG K  +      G
Sbjct: 396 INVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHG 455

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGYVNADNVEEAKFIY 220
            +      + +I+MY   G L  A K   E PV  +   W S+L       N E  +   
Sbjct: 456 IEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAA 515

Query: 221 NKM 223
           + M
Sbjct: 516 DNM 518


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/673 (34%), Positives = 370/673 (54%), Gaps = 44/673 (6%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE---- 225
           +TL++     G ++AA     +    DL     ++        + E + I+  M      
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLMRRVGLG 66

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            ++  SN +++++G+ G++ EA  +F+  P K++ SW+ LI+   Q+   +EAL LF  M
Sbjct: 67  SDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEM 126

Query: 286 IDHRVMVDEVVVVSVLSAC-ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +   +    V   + ++AC A    + AG ++HAL  + G +  +    +L+ MYS CG 
Sbjct: 127 LKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGS 186

Query: 345 ITTAEKLFDAGHNLDLISWNSMISG----------------------------------- 369
           +  + + F++    + +SWN+MI+                                    
Sbjct: 187 LEESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSDVVVGTTLV 246

Query: 370 --YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
             Y KC  +  A A F  + E ++++W+ +IS Y QH  F E + LF  M   G+  DE 
Sbjct: 247 NMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEV 306

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKIN-SILGTTLIDMYMKLGCVDNALEVFHG 486
           T ++++ AC   VAL+ G+ IHA +R++ L  N + L   +++MY K G + +A  +F  
Sbjct: 307 TFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKS 366

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA-CRHMGLVDE 545
             +  V +WN +I  +  +G   ++L  +  M++ GV P++ T+V V+ A C + GL +E
Sbjct: 367 MSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEE 426

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
            H +F SM Q+H + P   HYGCMV+ LG+AG L +AE LI+ MP  PDV TW + L  C
Sbjct: 427 AHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANC 486

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + HGD + G+   +  + + P+    +V L+ IHA  G + +   +R +M+ RG+ K  G
Sbjct: 487 RSHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAG 546

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S+I+    ++EF AGD+++P+  EI + L  + K++K  GY PD   VA D++  +KE 
Sbjct: 547 RSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEP 606

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            LF HSE+LAIAFG+I+ SP  P+RIMKNLR+C DCHT  K  S+   REI+VRD +RFH
Sbjct: 607 LLFAHSERLAIAFGIISTSPGTPLRIMKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFH 666

Query: 786 HFKHGSCSCMDFW 798
           HFK+GSCSC DFW
Sbjct: 667 HFKNGSCSCKDFW 679



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  L+ PN   +N ++ AY+Q    ++A+ L++ ML   + +D  T+  +  A  + +++
Sbjct: 262 FVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVAL 321

Query: 148 FEGKLIHDHVLKAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            +G+ IH  V +    S+   + N ++NMY  CG L  A  +F      D+++WN+++A 
Sbjct: 322 EDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAA 381

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIV 236
           Y    +  EA   Y  M E  ++  +   V
Sbjct: 382 YGQHGHTSEALRFYELMQEEGVVPDDYTYV 411



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +  P+   +NTM+ AY Q     +A+  Y+LM    V  D+YTY  +  AS     
Sbjct: 363 MFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAG 422

Query: 147 VFEG------KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDLVS 199
           + E        +  DH ++ G          ++      G LS A  L    P   D+++
Sbjct: 423 LPEEAHAYFVSMQQDHGVRPGGGH----YGCMVESLGKAGRLSDAETLIQCMPFEPDVLT 478

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL---FGRKGNVAEACRLFKEM 254
           W S LA   +  +++  K         +  AS   + L       G+  EA R+ K M
Sbjct: 479 WTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLM 536


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/668 (35%), Positives = 363/668 (54%), Gaps = 72/668 (10%)

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------P- 224
           +++ Y+  G++ A RK FDE PV D+VSWN+++A Y+   + +     +  M      P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 225 --------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFK 252
                                           E   I   +++ ++G+ G+  +A  +F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            M  +D+V+WSA+++ Y +N    EAL LF  M    V  ++V +VS L ACA+L  +++
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  +H      GI+  + +  AL+++Y                                K
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYG-------------------------------K 209

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           CG +E A   F  ++EK+VV+WS + + YA++D+  + + +   M   G+ P+  T VSV
Sbjct: 210 CGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSV 269

Query: 433 ISACTHLVALDQGKWIH--AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           + AC  + AL QG+ IH    +   GL+ +  + T L++MY K G +  A ++F      
Sbjct: 270 LDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHL 329

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            +  WN+LI   A +G  +K+LE+F  M+  G+ P  ITF  VL AC H G++D+G +HF
Sbjct: 330 DLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHF 389

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            S I +H + P ++H+GCMVDLLGRAG + ++E+L+  MP  P    W A LGAC+ + +
Sbjct: 390 VSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRN 449

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            +        L +L P     +VLLSN++A  GRW DV  +R  M     VK  G S IE
Sbjct: 450 MDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIE 509

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
               +HEF++GD  HP+I EI   L  + K +K  GY PDT  V  D+ QE KE  +  H
Sbjct: 510 VKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYH 569

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SEKLA+AF L+T    +PIR++KNLR+CNDCHTA+KFIS+  +REIVVRD +RFH F++G
Sbjct: 570 SEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNG 629

Query: 791 SCSCMDFW 798
           +CSC D+W
Sbjct: 630 ACSCGDYW 637



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 41/256 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ M+ AY +   P++A+ L++ M  + V  +  T      A A    +  G L+H  V 
Sbjct: 130 WSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVE 189

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
             G  S V V   L+N+Y  CG + AA + F +    ++V+W++I A Y   D   +A  
Sbjct: 190 AQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIR 249

Query: 219 IYNKMP-----------------------------------------ERNIIASNSMIVL 237
           + ++M                                          E ++    +++ +
Sbjct: 250 VLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNM 309

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + GN+A A  +F ++   DLV W++LI+   Q+   E+AL LF  M    +    +  
Sbjct: 310 YSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITF 369

Query: 298 VSVLSACANLTVVKAG 313
            SVL AC++  ++  G
Sbjct: 370 TSVLFACSHAGMLDQG 385


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/729 (35%), Positives = 391/729 (53%), Gaps = 76/729 (10%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYI-----------QRNVPQQAICLYKLMLNNNVGV 129
           + ++ +IFA +   N   ++ M++ YI            R +PQQ   L+  ML+     
Sbjct: 249 LGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLS----- 303

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
                     A +    V E + I D   +A    D    N L++ YA  G L  AR  F
Sbjct: 304 ----------AYSRHGLVEEARRIFD---RAARRDDEVSWNALLSAYAQAGHLHLARSTF 350

Query: 190 DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           +  P  D+V+W +++A       +EEA+ +Y+ +PER+++A  ++I  +G  G + E+ R
Sbjct: 351 ERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKR 410

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           ++  MP+++ VS +A+I  Y QN            ++  R M+D              T+
Sbjct: 411 VYALMPERNRVSHTAMIIAYSQNG----------EVVQARKMLD--------------TL 446

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
                S                + ++I  Y+  G I  A ++FD+  N D+I+ N+M+  
Sbjct: 447 PDPDQST---------------RTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEA 491

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y     ++ A+A+FD++ +K +VSW+TM++ YAQ     E  S+F  + H  +      +
Sbjct: 492 YSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMI 551

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           V    A  H + L + + I   + +     +++  T ++ M  + G +  A E+F     
Sbjct: 552 V----AYAHNMDLAEARRIFYSMDEK----DTVTWTAMVAMVAQHGRLAEAQELFAKMPY 603

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + V SWN+LI G A  G    ++     M+  G  P+ ITF+G+L AC H+GLV+EG  H
Sbjct: 604 RNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTH 663

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F SM  +H L P  +HY  MVD+LGRAG L  A EL+E+MP  PDV  WG+LLG+CK H 
Sbjct: 664 FTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHS 723

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           D ++G R    L++      G +VLL+N+++S GR  D L VR  M  RGV K PG S+I
Sbjct: 724 DVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLI 783

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
             +G++H F+AG+ +HP+  EI + L  + + +K  GY PDT  V   I  EEKE  L  
Sbjct: 784 RVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSILDEEKEVLLSY 843

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLAIAF  I   P  PIRIMKNLR+C+DCHTA KF+S+   REI+VRD +RFH+F++
Sbjct: 844 HSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHNFEN 903

Query: 790 GSCSCMDFW 798
           G+CSC D+W
Sbjct: 904 GTCSCGDYW 912



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 225/528 (42%), Gaps = 103/528 (19%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVC----------------------------- 179
           +G+ IH+ +       ++++ N +I MY  C                             
Sbjct: 30  QGRKIHNQIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYS 89

Query: 180 --GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
             GDL +A+ +FD+ P  ++VSWNS++AG+     +  A  I+ +MP  +  + NSMI  
Sbjct: 90  ENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITG 149

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF--------------- 282
           + + G++A A  +F   P+ +++SW+ALI+ Y  N M  EA  +F               
Sbjct: 150 YAQSGDLASATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAML 209

Query: 283 ------------MNMIDHRVMVDEVVVVSVLSACA-------NLTVVKAGTSVHALAVKI 323
                         + D     D V    ++ ACA        + +  A    +A++   
Sbjct: 210 TAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSF 269

Query: 324 GIECYIN--------------------LQNALIHMYSSCGEITTAEKLFD-AGHNLDLIS 362
            I+ YI+                    L  +++  YS  G +  A ++FD A    D +S
Sbjct: 270 MIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVS 329

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WN+++S Y + G +  AR+ F+ M   DVV+W+ +I+   Q+ Q  E   L+  +     
Sbjct: 330 WNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPER-- 387

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
             D     ++I A      L + K ++A + +     N +  T +I  Y + G V  A +
Sbjct: 388 --DLVAWTALIQAYGVNGKLTESKRVYALMPER----NRVSHTAMIIAYSQNGEVVQARK 441

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +     +   S+  ++I+ +A NG    + EMF  +K     P+ I    ++ A     +
Sbjct: 442 MLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIK----NPDVIACNAMMEAYSSAQM 497

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           +D     F+S+ Q+  +  N+     MV    +AG L EA+ + +S+P
Sbjct: 498 LDHAKAMFDSIKQKTLVSWNT-----MVAAYAQAGNLDEAKSIFDSIP 540



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 156/334 (46%), Gaps = 24/334 (7%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ S +++A +   N      M+ AY Q     QA    + ML+     D  T   +  
Sbjct: 404 KLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQA----RKMLDTLPDPDQSTRTSMIV 459

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A    + + + + D +     + DV   N ++  Y+    L  A+ +FD      LVS
Sbjct: 460 AYAQNGYIKDAREMFDSIK----NPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVS 515

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           WN+++A Y  A N++EAK I++ +P +N+++ N MIV +    ++AEA R+F  M +KD 
Sbjct: 516 WNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMIVAYAHNMDLAEARRIFYSMDEKDT 575

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V+W+A+++   Q+    EA  LF  M  +R +V    +++ +++C +   + A   ++ +
Sbjct: 576 VTWTAMVAMVAQHGRLAEAQELFAKM-PYRNVVSWNSLIAGMASCGH--GMAAVRYLYVM 632

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD----LISWNS----MISGYL 371
             +     +I     LI    +C  +   E+ +    ++     LI W      M+    
Sbjct: 633 RNEGAKPDHITFMGILI----ACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLG 688

Query: 372 KCGSVEKARALFDAM-IEKDVVSWSTMISGYAQH 404
           + G +  AR L + M    DV +W +++     H
Sbjct: 689 RAGQLGAARELLETMPFIPDVGAWGSLLGSCKTH 722



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 150/354 (42%), Gaps = 19/354 (5%)

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           M+++  +V   +  + + + +C     +  G  +H           + LQN +I MY  C
Sbjct: 1   MSLLKTQVRELQNALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKC 60

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
             I  A+ +F+     ++ S   ++  Y + G +  A+A+FD +   +VVSW+++I+G++
Sbjct: 61  SRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFS 120

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           QH   S    +F  M     R   ++  S+I+       L     +     ++    N I
Sbjct: 121 QHGFMSNADEIFARMP----RWSSSSWNSMITGYAQSGDLASATAMFDRTPEH----NVI 172

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
               LI  Y     +  A  VF     +   SWNA++  +A +G  D + E+F    +  
Sbjct: 173 SWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQD 232

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           +    ++   ++ AC    ++      F +M      + N+  Y  M+ +    G + EA
Sbjct: 233 I----VSCTLMIKACAVQEILGHAVEIFAAMP-----DRNAVSYSFMIQIYIDQGKIGEA 283

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           E L   MP   D   W ++L A  +HG  E   R+  +    + D   ++ LLS
Sbjct: 284 ENLSRRMPQQ-DPTLWTSMLSAYSRHGLVEEARRIFDRAAR-RDDEVSWNALLS 335


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/575 (40%), Positives = 344/575 (59%), Gaps = 32/575 (5%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           + NI    +++ ++ +  ++  A R+F +MP+++LVSW+++I  +  N +Y+ A+ +F +
Sbjct: 42  DANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKD 101

Query: 285 MIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
           ++  + ++ +EV V SVLSACAN+  +  G  VH + VK G+     + N+L+ MY  C 
Sbjct: 102 VLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKC- 160

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                 + FD G                          LF  + ++DVV+W+ ++ G+ Q
Sbjct: 161 ------RFFDEG------------------------VKLFQCVGDRDVVTWNVLVMGFVQ 190

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           +D+F E  + F  M+  GI PDEA+  +V+ +   L AL QG  IH  I K G   N  +
Sbjct: 191 NDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCI 250

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +LI MY K G + +A +VF G E+  V SW A+I  + ++G A++ +E+F  M   G+
Sbjct: 251 LGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGI 310

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+ +TFV VL AC H G V+EG  HFNSM + H + P  +HY CMVDLLGRAG L EA+
Sbjct: 311 EPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAK 370

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
             IESMPM P  + WGALLGAC+K+G+ +MG     +L E++P + G +VLL+N+    G
Sbjct: 371 RFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSG 430

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           R ++  EVR +M   GV K PGCS I+   +   F A DR+H   +EI  ML+++ K +K
Sbjct: 431 RLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVK 490

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            +GY  +T  V   +++ E+E  L+ HSEKLA+AFGL+T+   +PIRI KNLR C  CHT
Sbjct: 491 KKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHT 550

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K  S+ FDREI+VRD +RFH F  G CSC D+W
Sbjct: 551 VMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 216/499 (43%), Gaps = 112/499 (22%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           + +T+  +  ASA  + V  G+ +H  + K GFD++++V   L++MYA C D+ +A ++F
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 190 DESPVLDLVSWNSILAGY-----------VNADNVEEAKFIYNKMPERNIIAS------- 231
           D+ P  +LVSWNS++ G+           V  D + E   I N++   +++++       
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 232 ----------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                 NS++ ++ +     E  +LF+ +  +D+V+W+ L+  +
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 188

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            QN+ +EEA   F  M    ++ DE    +VL + A+L  +  GT++H   +K+G    +
Sbjct: 189 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 248

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            +  +LI MY+ CG +  A ++F+   + ++ISW +MIS Y   G   +   LF+ M+ +
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 308

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                                          GI P   T V V+SAC+H   +++G    
Sbjct: 309 -------------------------------GIEPSHVTFVCVLSACSHTGRVEEGLAHF 337

Query: 450 AYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNGL 507
             ++K + +         ++D+  + G +D A         K   S W AL         
Sbjct: 338 NSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL--------- 388

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHY 566
                                     LGACR  G +  G      + +   +EP N  +Y
Sbjct: 389 --------------------------LGACRKYGNLKMGREAAERLFE---MEPYNPGNY 419

Query: 567 GCMVDLLGRAGMLKEAEEL 585
             + ++  R+G L+EA E+
Sbjct: 420 VLLANMCTRSGRLEEANEV 438



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 172/347 (49%), Gaps = 36/347 (10%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           ++    S+LSA A   +V  G  +H+L  K G +  I +  AL+ MY+            
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYA------------ 56

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                              KC  +  A  +FD M E+++VSW++MI G+  ++ +   + 
Sbjct: 57  -------------------KCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVG 97

Query: 413 LFME-MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           +F + ++   + P+E ++ SV+SAC ++  L+ G+ +H  + K GL   + +  +L+DMY
Sbjct: 98  VFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMY 157

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K    D  +++F    ++ V +WN L++GF  N   +++   F  M++ G+ P+E +F 
Sbjct: 158 FKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFS 217

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL +   +  + +G    + +I+   ++ N    G ++ +  + G L +A ++ E +  
Sbjct: 218 TVLHSSASLAALHQGTAIHDQIIKLGYVK-NMCILGSLITMYAKCGSLVDAYQVFEGIE- 275

Query: 592 SPDVATWGALLGACKKHG-DHEMGERVGRKLVE-LQPDHDGFHVLLS 636
             +V +W A++ A + HG  +++ E     L E ++P H  F  +LS
Sbjct: 276 DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLS 322



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+  G  P++ T  S++SA    + +  G+ +H+ I K+G   N  +GT L+DMY K   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE-MKKSGVTPNEITFVGVLG 535
           + +A+ VF    E+ + SWN++I+GF  N L D+++ +F + +++  V PNE++   VL 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC +MG ++ G R  + ++ +  L P +     ++D+  +     E  +L + +    DV
Sbjct: 121 ACANMGGLNFG-RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG-DRDV 178

Query: 596 ATWGALL 602
            TW  L+
Sbjct: 179 VTWNVLV 185



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 127/297 (42%), Gaps = 43/297 (14%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
           G  A+ F  + L+          +M  + ++F  +   N   +N+M+  +   N+  +A+
Sbjct: 40  GFDANIFVGTALVDMYAKC---ADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAV 96

Query: 117 CLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
            ++K +L     + N  +   +  A A    +  G+ +H  V+K G     YV N+L++M
Sbjct: 97  GVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDM 156

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS---- 231
           Y  C       KLF      D+V+WN ++ G+V  D  EEA   +  M    I+      
Sbjct: 157 YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASF 216

Query: 232 -----------------------------------NSMIVLFGRKGNVAEACRLFKEMPK 256
                                               S+I ++ + G++ +A ++F+ +  
Sbjct: 217 STVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 276

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
            +++SW+A+IS Y+ +    + + LF +M+   +    V  V VLSAC++   V+ G
Sbjct: 277 HNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG 333



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 109/260 (41%), Gaps = 44/260 (16%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+   ++  GL+  T+  + L+        F E     K+F  +   +   +N ++  ++
Sbjct: 133 QVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDE---GVKLFQCVGDRDVVTWNVLVMGFV 189

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q +  ++A   + +M    +  D  ++  +  +SA   ++ +G  IHD ++K G+  ++ 
Sbjct: 190 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMC 249

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------------------- 207
           +  +LI MYA CG L  A ++F+     +++SW ++++ Y                    
Sbjct: 250 ILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG 309

Query: 208 ---------------VNADNVEEAKFIYNKMPERNIIASNS-----MIVLFGRKGNVAEA 247
                           +   VEE    +N M + + +         M+ L GR G + EA
Sbjct: 310 IEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEA 369

Query: 248 CRLFKEMPKKDLVS-WSALI 266
            R  + MP K   S W AL+
Sbjct: 370 KRFIESMPMKPTPSVWGALL 389


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/586 (40%), Positives = 344/586 (58%), Gaps = 35/586 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV-MVDEVVVVSVLSACA 305
           A RLF ++   D+  ++ LI     ++    AL LF+ M    V + D      +L A A
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD--------AGHN 357
           N   +  G  +H LAV  G++ ++ +   LI MY+ C  +  A K+FD        A + 
Sbjct: 118 NCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNA 177

Query: 358 L-----------------------DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +                       +L SWN M++GY K G ++ AR +F  M  KD VSW
Sbjct: 178 IVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSW 237

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           STMI G+A +  F++  + F E++  G+RP+E +L  V+SAC    A + G+ +H ++ K
Sbjct: 238 STMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEK 297

Query: 455 NG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           +G L+I S+    LID Y K G +D A  VF     +   SW A+I G AM+G  ++++ 
Sbjct: 298 SGFLQIISV-NNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIR 356

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F+EM++S + P+ ITF+ +L AC H GLVD G  +F+ M+  + +EP  +HYGCMVDL 
Sbjct: 357 LFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLY 416

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG L++A + +  MP+SP+   W  LLGAC  HG+  +  +V R+L EL P++ G HV
Sbjct: 417 GRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHV 476

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A  G+W DV  +R  M  + + K PG SMIE N II+ F+AG++ +    E   
Sbjct: 477 LLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQ 536

Query: 694 MLDEMAKKLKLE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            L E+  +L++E GY P+   V  DI+ EEKE ++ +HSEKLA+AFG+  +     IR++
Sbjct: 537 KLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVV 596

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC DCHT  K IS+ ++ EIVVRDR RFH F HGSCSC D+W
Sbjct: 597 KNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 379/714 (53%), Gaps = 64/714 (8%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML--NNNVGVDNYTYPLLAQASALR 144
           +FA +   +   +N ++  +       QA+ +Y  +L  +++V     T   +  A++  
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                GK  H  +L+ GF ++ +V + L++MYA    +  A++ FDE             
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDE------------- 200

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                             +  +N++  N+MI    R   V EA RLF+ M  +D ++W+ 
Sbjct: 201 ------------------VDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTT 242

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +++ + QN +  EAL +F  M    + +D+    S+L+AC  L+ ++ G  +HA  ++  
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTR 302

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  + + +AL+ MYS                               KC S++ A  +F 
Sbjct: 303 YDDNVFVGSALVDMYS-------------------------------KCRSIKLAETVFR 331

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  K+++SW+ +I GY Q+    E + +F EMQ  GI PD+ TL SVIS+C +L +L++
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H     +GL     +   L+ +Y K G +++A  +F         SW AL+ G+A 
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A +++++F +M   GV P+ +TF+GVL AC   G V++G  +F+SM ++H + P   
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DL  R+G LKEAEE I+ MPM PD   WG LL AC+  GD E+G+     L+E+
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEI 571

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P +   +VLL ++HA+KG+W++V ++R  M  R V K PGCS I+    +H F A D++
Sbjct: 572 DPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQS 631

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP    I   L+ +  K+  EGY PD   V  D+   +K   +  HSEKLAIAFGLI + 
Sbjct: 632 HPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVP 691

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PIRI+KNLR+C DCH A KFIS+   R+I+VRD  RFH F  G CSC DFW
Sbjct: 692 QEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 176/384 (45%), Gaps = 44/384 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   + TM+  + Q  +  +A+ +++ M    + +D YT+  +  A     
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ +GK IH ++++  +D +V+V + L++MY+ C  +  A  +F      +++SW +++ 
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
           GY      EEA  ++++M                                          
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 228 -IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            I  SN+++ L+G+ G++ +A RLF EM   D VSW+AL+S Y Q    +E + LF  M+
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKML 466

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V  D V  + VLSAC+    V+ G S  H++    GI    +    +I +YS  G++
Sbjct: 467 AKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKL 526

Query: 346 TTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGY 401
             AE+       + D I W +++S     G +E  +   + ++E D     S+  + S +
Sbjct: 527 KEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMH 586

Query: 402 AQHDQFSETLSLFMEMQHHGIRPD 425
           A   Q++E   L   M+   ++ +
Sbjct: 587 AAKGQWNEVAQLRRGMRDRQVKKE 610



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 152/330 (46%), Gaps = 38/330 (11%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L N L+  Y   G    A ++FDA  + +L ++N+++S       +    ALF +M ++D
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRD 102

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVALDQGKWI 448
           +VS++ +I+G++     ++ + +++ +      +RP   T+ +++ A + L     GK  
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS--------------- 493
           H  I + G   N+ +G+ L+DMY K+  V +A   F   + K V                
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMV 222

Query: 494 ----------------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
                           +W  ++ GF  NGL  ++LE+F  M+  G+  ++ TF  +L AC
Sbjct: 223 EEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTAC 282

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +  +++G +  ++ I   R + N      +VD+  +   +K AE +   M    ++ +
Sbjct: 283 GALSALEQG-KQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM-TCKNIIS 340

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPD 627
           W AL+    ++G  E   RV     E+Q D
Sbjct: 341 WTALIVGYGQNGCSEEAVRV---FSEMQRD 367


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/717 (34%), Positives = 383/717 (53%), Gaps = 43/717 (5%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           ++ ++F+ +E P  F  N+M+  Y +      AI  ++ M   +V   N     L+Q+  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +R ++  G ++  H      DS  Y ++           L+A  +LF        + W  
Sbjct: 251 VREAL--GLVVEMHRKGVRLDSTTYTSS-----------LTACARLFS-------LGWGK 290

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
            L           AK I   +P+ +   ++++I L+ + G+  EA R+F  +  ++ VSW
Sbjct: 291 QL----------HAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + LI    Q E + +++ LF  M    + +D+  + +++S C N   +  G  +H+L +K
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 399

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G    I + N+LI +Y+ CG++  AE +F +    D++SW SMI+ Y + G++ KAR  
Sbjct: 400 SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREF 459

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVA 441
           FD M  ++ ++W+ M+  Y QH    + L ++  M     + PD  T V++   C  + A
Sbjct: 460 FDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGA 519

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              G  I  +  K GL +N  +    I MY K G +  A ++F     K V SWNA+I G
Sbjct: 520 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 579

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           ++ +G+  ++ + F +M   G  P+ I++V VL  C H GLV EG  +F+ M + H + P
Sbjct: 580 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 639

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG+ E+ E   + +
Sbjct: 640 GLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHV 699

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            EL     G ++LL+ I++  G+ DD  +VR +M  +G+ K PG S +E    +H F A 
Sbjct: 700 FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKAD 759

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D +HPQ+  I N LDE+ +K+   GY            + E   +   HSEKLA+AFG++
Sbjct: 760 DVSHPQVIAIRNKLDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIM 808

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++    PI IMKNLRIC DCHT  K IS   DRE V+RD  RFHHFK GSCSC D+W
Sbjct: 809 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 228/492 (46%), Gaps = 64/492 (13%)

Query: 138 AQASALRLSVFEGKL-----IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           A A ALR     G L     +H  ++  G  S V++ NTL++ Y  CG LS AR+L    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRL---- 61

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
                          + AD           + E N+I  N M+  + ++G++++A  LF 
Sbjct: 62  ---------------LRAD-----------IKEPNVITHNIMMNGYAKQGSLSDAEELFD 95

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV---MVDEVVVVSVLSACANLTV 309
            MP++D+ SW+ L+S Y Q   + + L  F++M  HR    + +      V+ +C  L  
Sbjct: 96  RMPRRDVASWNTLMSGYFQARRFLDGLETFVSM--HRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +    +  L  K       +++ AL+ M+  CG +  A +LF       +   NSM++G
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K   ++ A   F+ M E+DVVSW+ MI+  +Q  +  E L L +EM   G+R D  T 
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            S ++AC  L +L  GK +HA + ++  +I+  + + LI++Y K G    A  VF+  ++
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SW  LI G        KS+E+F++M+   +  ++     ++  C            
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC------------ 381

Query: 550 FNSM-----IQEHRLEPNSKH------YGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           FN M      Q H L   S H         ++ L  + G L+ AE +  SM    D+ +W
Sbjct: 382 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSW 440

Query: 599 GALLGACKKHGD 610
            +++ A  + G+
Sbjct: 441 TSMITAYSQIGN 452


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/715 (32%), Positives = 384/715 (53%), Gaps = 68/715 (9%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S ++F  +  P    + +++R Y    +P Q++  +  ML + +  D+  +P + ++ AL
Sbjct: 59  SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            + +  G+ +H ++++ G D D+Y  N L+NMY+         +  +ES    L      
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYS-------KLRFLEESGRQRL------ 165

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
                       A  ++++M ER        ++      +     ++F+ MP+KDLVSW+
Sbjct: 166 -----------GAGEVFDEMTERTRSVRTVSVL------SEDSVRKIFEMMPEKDLVSWN 208

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +I+   +N +YEE L +   M    +  D   + SVL   A    +  G  +H  +++ 
Sbjct: 209 TIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ 268

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G++  I + ++LI MY+                               KC  V  +  +F
Sbjct: 269 GLDADIYVASSLIDMYA-------------------------------KCTRVADSCRVF 297

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
             + E+D +SW+++I+G  Q+  F E L  F +M    I+P   +  S++ AC HL  L 
Sbjct: 298 TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            GK +H YI +NG   N  + ++L+DMY K G +  A ++F     + + SW A+I+G A
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCA 417

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
           ++G A  ++E+F +M+  G+         VL AC H GLVDE  ++FNSM ++  + P  
Sbjct: 418 LHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGV 470

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +HY  + DLLGRAG L+EA + I  M + P  + W  LL AC+ H + +M E+V  +++E
Sbjct: 471 EHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILE 530

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           + P++ G ++LL+NI+++  RW +  + R  M R G+ K P CS IE    ++ F+AGD 
Sbjct: 531 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDE 590

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP   +I   ++ + + ++ EGY PDT EV  D+++E+K+  +  HSE+LAI FG+I  
Sbjct: 591 SHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINT 650

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
                IR+ KNLR+C DCHTA KFIS+   REIVVRD  RFHHFK+G+CSC D+W
Sbjct: 651 PAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 189/365 (51%), Gaps = 3/365 (0%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           ++ RLF  +     ++W ++I CY  + +  ++L  F+ M+   +  D  V  SVL +CA
Sbjct: 58  DSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT-TAEKLFDAGHNLDLISWN 364
            L  +  G S+H   +++G++  +   NAL++MYS    +  +  +   AG   D ++  
Sbjct: 118 LLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTER 177

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +     +   S +  R +F+ M EKD+VSW+T+I+G A++  + ETL +  EM    ++P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  TL SV+      V + +GK IH    + GL  +  + ++LIDMY K   V ++  VF
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               E+   SWN++I G   NGL D+ L  F +M  + + P   +F  ++ AC H+  + 
Sbjct: 298 TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            G +  +  I  +  + N      +VD+  + G ++ A+++ + M +  D+ +W A++  
Sbjct: 358 LG-KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMG 415

Query: 605 CKKHG 609
           C  HG
Sbjct: 416 CALHG 420



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 103/203 (50%), Gaps = 6/203 (2%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           I  GL AD + AS LI           ++ S ++F  L   +G  +N+++   +Q  +  
Sbjct: 266 IRQGLDADIYVASSLIDMYAKC---TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD 322

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           + +  ++ ML   +   +Y++  +  A A   ++  GK +H ++ + GFD ++++ ++L+
Sbjct: 323 EGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 382

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           +MYA CG++  A+++FD   + D+VSW +++ G        +A  ++ +M    I A   
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA--- 439

Query: 234 MIVLFGRKGNVAEACRLFKEMPK 256
           ++      G V EA + F  M +
Sbjct: 440 VLTACSHGGLVDEAWKYFNSMTR 462


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/717 (34%), Positives = 383/717 (53%), Gaps = 43/717 (5%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           ++ ++F+ +E P  F  N+M+  Y +      AI  ++ M   +V   N     L+Q+  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +R ++  G ++  H      DS  Y ++           L+A  +LF        + W  
Sbjct: 251 VREAL--GLVVEMHRKGVRLDSTTYTSS-----------LTACARLFS-------LGWGK 290

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
            L           AK I   +P+ +   ++++I L+ + G+  EA R+F  +  ++ VSW
Sbjct: 291 QL----------HAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + LI    Q E + +++ LF  M    + +D+  + +++S C N   +  G  +H+L +K
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 399

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G    I + N+LI +Y+ CG++  AE +F +    D++SW SMI+ Y + G++ KAR  
Sbjct: 400 SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREF 459

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVA 441
           FD M  ++ ++W+ M+  Y QH    + L ++  M     + PD  T V++   C  + A
Sbjct: 460 FDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGA 519

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              G  I  +  K GL +N  +    I MY K G +  A ++F     K V SWNA+I G
Sbjct: 520 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 579

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           ++ +G+  ++ + F +M   G  P+ I++V VL  C H GLV EG  +F+ M + H + P
Sbjct: 580 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 639

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG+ E+ E   + +
Sbjct: 640 GLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHV 699

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            EL     G ++LL+ I++  G+ DD  +VR +M  +G+ K PG S +E    +H F A 
Sbjct: 700 FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKAD 759

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D +HPQ+  I N +DE+ +K+   GY            + E   +   HSEKLA+AFG++
Sbjct: 760 DVSHPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIM 808

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++    PI IMKNLRIC DCHT  K IS   DRE V+RD  RFHHFK GSCSC D+W
Sbjct: 809 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 228/492 (46%), Gaps = 64/492 (13%)

Query: 138 AQASALRLSVFEGKL-----IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           A A ALR     G L     +H  ++  G  S V++ NTL++ Y  CG LS AR+L    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRL---- 61

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
                          + AD           + E N+I  N M+  + ++G++++A  LF 
Sbjct: 62  ---------------LRAD-----------IKEPNVITHNIMMNGYAKQGSLSDAEELFD 95

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV---MVDEVVVVSVLSACANLTV 309
            MP++D+ SW+ L+S Y Q   + + L  F++M  HR    + +      V+ +C  L  
Sbjct: 96  RMPRRDVASWNTLMSGYFQARRFLDGLETFVSM--HRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +    +  L  K       +++ AL+ M+  CG +  A +LF       +   NSM++G
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y K   ++ A   F+ M E+DVVSW+ MI+  +Q  +  E L L +EM   G+R D  T 
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            S ++AC  L +L  GK +HA + ++  +I+  + + LI++Y K G    A  VF+  ++
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           +   SW  LI G        KS+E+F++M+   +  ++     ++  C            
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC------------ 381

Query: 550 FNSM-----IQEHRLEPNSKH------YGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           FN M      Q H L   S H         ++ L  + G L+ AE +  SM    D+ +W
Sbjct: 382 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSW 440

Query: 599 GALLGACKKHGD 610
            +++ A  + G+
Sbjct: 441 TSMITAYSQIGN 452


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 348/582 (59%), Gaps = 36/582 (6%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
             Y+     N++AS ++     R G++  AC +F ++ +     ++ +I     +   EE
Sbjct: 59  LFYDSFCGSNLVASCAL----SRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEE 114

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL+L++ M++  +  D      VL AC+ L  +K G  +HA                   
Sbjct: 115 ALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHA------------------- 155

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
                        +F AG  +D+   N +IS Y KCG++E A  +F+ M EK V SWS++
Sbjct: 156 ------------HVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSI 203

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I  +A  + + E L L  +M   G  R +E+ LVS +SACTHL + + G+ IH  + +N 
Sbjct: 204 IGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNI 263

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            ++N ++ T+LIDMY+K G ++  L VF     K   S+  +I G A++G   +++ +FS
Sbjct: 264 SELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFS 323

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M + G+TP+++ +VGVL AC H GLV+EG + FN M  EH ++P  +HYGCMVDL+GRA
Sbjct: 324 DMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRA 383

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           GMLKEA +LI+SMP+ P+   W +LL ACK H + E+GE     +  L   + G +++L+
Sbjct: 384 GMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLA 443

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A   +W +V  +R  M  + +V+ PG S++EAN  +++F++ D++ P    I +M+ 
Sbjct: 444 NMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQ 503

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           +M  +LK EGY PD  +V  D+D++EK   L  HS+KLAIAF LI  S  +PIRI +NLR
Sbjct: 504 QMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLR 563

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +CNDCHT  KFIS  ++REI VRDR+RFHHFK G+CSC D+W
Sbjct: 564 MCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 164/336 (48%), Gaps = 52/336 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C+S ++F Q+ + ++  GL  D+F  S L+  S  L  +  M Y+  IF+ +E P  
Sbjct: 38  LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVA-SCALSRWGSMEYACSIFSQIEEPGS 96

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F +NTM+R  +     ++A+ LY  ML   +  DN+TYP + +A +L +++ EG  IH H
Sbjct: 97  FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAH 156

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V KAG + DV+V N LI+MY  CG +  A  +F++     + SW+SI+  + + +   E 
Sbjct: 157 VFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
             +   M                                         E N++   S+I 
Sbjct: 217 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G++ +   +F+ M  K+  S++ +I+    +    EA+ +F +M++  +  D+VV
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVV 336

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            V VLSAC+           HA  V  G++C+  +Q
Sbjct: 337 YVGVLSACS-----------HAGLVNEGLQCFNRMQ 361



 Score = 41.2 bits (95), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 12/164 (7%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ IH  +L+   + +V V  +LI+MY  CG L     +F      +  S+  ++AG   
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMP-----KKDLV 260
                EA  +++ M E  +   + + V         G V E  + F  M      K  + 
Sbjct: 312 HGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQ 371

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            +  ++    +  M +EA  L  +M    +  ++VV  S+LSAC
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSM---PIKPNDVVWRSLLSAC 412


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/717 (34%), Positives = 383/717 (53%), Gaps = 43/717 (5%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           ++ ++F+ +E P  F  N+M+  Y +      AI  ++ M   +V   N     L+Q+  
Sbjct: 181 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 240

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +R ++  G ++  H      DS  Y ++           L+A  +LF        + W  
Sbjct: 241 VREAL--GLVVEMHRKGVRLDSTTYTSS-----------LTACARLFS-------LGWGK 280

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
            L           AK I   +P+ +   ++++I L+ + G+  EA R+F  +  ++ VSW
Sbjct: 281 QL----------HAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 329

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + LI    Q E + +++ LF  M    + +D+  + +++S C N   +  G  +H+L +K
Sbjct: 330 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 389

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G    I + N+LI +Y+ CG++  AE +F +    D++SW SMI+ Y + G++ KAR  
Sbjct: 390 SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREF 449

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVA 441
           FD M  ++ ++W+ M+  Y QH    + L ++  M     + PD  T V++   C  + A
Sbjct: 450 FDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGA 509

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              G  I  +  K GL +N  +    I MY K G +  A ++F     K V SWNA+I G
Sbjct: 510 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 569

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           ++ +G+  ++ + F +M   G  P+ I++V VL  C H GLV EG  +F+ M + H + P
Sbjct: 570 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 629

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG+ E+ E   + +
Sbjct: 630 GLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHV 689

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            EL     G ++LL+ I++  G+ DD  +VR +M  +G+ K PG S +E    +H F A 
Sbjct: 690 FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKAD 749

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D +HPQ+  I N +DE+ +K+   GY            + E   +   HSEKLA+AFG++
Sbjct: 750 DVSHPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIM 798

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++    PI IMKNLRIC DCHT  K IS   DRE V+RD  RFHHFK GSCSC D+W
Sbjct: 799 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 214/489 (43%), Gaps = 84/489 (17%)

Query: 138 AQASALRLSVFEGKL-----IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           A A ALR     G L     +H  ++  G  S V++ NTL++ Y  CG LS AR+L    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRL---- 77

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
                          + AD           + E N+I  N M+  + ++G++++A  LF 
Sbjct: 78  ---------------LRAD-----------IKEPNVITHNIMMNGYAKQGSLSDAEELFD 111

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
            MP++D+ SW+ L+S                         D         +C  L   + 
Sbjct: 112 RMPRRDVASWNTLMS-------------------------DTSRPAGSWMSCGALGCREL 146

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
              +  L  K       +++ AL+ M+  CG +  A +LF       +   NSM++GY K
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
              ++ A   F+ M E+DVVSW+ MI+  +Q  +  E L L +EM   G+R D  T  S 
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           ++AC  L +L  GK +HA + ++  +I+  + + LI++Y K G    A  VF+  +++  
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 326

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW  LI G        KS+E+F++M+   +  ++     ++  C            FN 
Sbjct: 327 VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC------------FNR 374

Query: 553 M-----IQEHRLEPNSKH------YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           M      Q H L   S H         ++ L  + G L+ AE +  SM    D+ +W ++
Sbjct: 375 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSM 433

Query: 602 LGACKKHGD 610
           + A  + G+
Sbjct: 434 ITAYSQIGN 442



 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/560 (22%), Positives = 240/560 (42%), Gaps = 124/560 (22%)

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG---------------- 206
           + +V  +N ++N YA  G LS A +LFD  P  D+ SWN++++                 
Sbjct: 84  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 207 -----------------------------YVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
                                        +V    V+ A  +++++    I   NSM+  
Sbjct: 144 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 203

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + +   +  A   F++M ++D+VSW+ +I+   Q+    EAL L + M    V +D    
Sbjct: 204 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 263

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S L+ACA L  +  G  +HA  ++   +    + +ALI +Y+ CG    A+++F++  +
Sbjct: 264 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 323

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            + +SW  +I G L                               Q++ FS+++ LF +M
Sbjct: 324 RNSVSWTVLIGGSL-------------------------------QYECFSKSVELFNQM 352

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +   +  D+  L ++IS C + + L  G+ +H+   K+G     ++  +LI +Y K G +
Sbjct: 353 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 412

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            NA  VF    E+ + SW ++I  ++  G   K+ E F  M     T N IT+  +LGA 
Sbjct: 413 QNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAY 468

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHY-----GC------------------------ 568
              G  ++G + +++M+ +  + P+   Y     GC                        
Sbjct: 469 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 528

Query: 569 ------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
                  + +  + G + EA++L + +    DV +W A++    +HG   MG++  +   
Sbjct: 529 VSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQHG---MGKQAAKTFD 584

Query: 623 EL-----QPDHDGFHVLLSN 637
           ++     +PD+  +  +LS 
Sbjct: 585 DMLSKGAKPDYISYVAVLSG 604


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/648 (36%), Positives = 351/648 (54%), Gaps = 62/648 (9%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + +H     +G  +D +  N L+  YA  GDL+AAR+LF+  P  +++SWN +  GY+  
Sbjct: 123 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 182

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
            ++  A+ ++++MPERN+                                +W+A+++   
Sbjct: 183 GDLGGARKLFDEMPERNV-------------------------------ATWNAMVAGLT 211

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
                EE+L  F++M    +  DE  + SV   CA L  V  G  VHA  V+ G++  + 
Sbjct: 212 NLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMC 271

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + ++L HMY  CG +   E +     +L ++S N++I+G  + G  E A           
Sbjct: 272 VGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGA----------- 320

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                               L  F  M+  G+  D  T VS IS+C+ L AL QG+ IH 
Sbjct: 321 --------------------LEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHG 360

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + K G+     + T L+ MY + GC+ ++  VF G         +A+I  +  +G   K
Sbjct: 361 QVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQK 420

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E+F +M   G  P+++TF+ +L AC H GL +EG   F  M + + ++P+ KHY C+V
Sbjct: 421 AIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVV 480

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G L EAE LI SMP++PD   W  LL ACK   + +M ER+ ++++EL P    
Sbjct: 481 DLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSA 540

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI A+  RW DV EVR  M    V K PG S +E  G IH+F  GD +HP+  E
Sbjct: 541 SYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKE 600

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           ID  L+EM  K++  GY+PD   V  D++ EEKE +L  HSEKLAIAF  +++    PIR
Sbjct: 601 IDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIR 660

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +MKNLR+C+DCH A K +S+   REIVVRD  RFHHFK G CSC D+W
Sbjct: 661 VMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 170/432 (39%), Gaps = 78/432 (18%)

Query: 33  LETHL-QKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           L +HL + C++ +   Q+ +    +G   D F A+ L+    DL    +++ + ++F  +
Sbjct: 108 LFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADL---GDLTAARELFERI 164

Query: 92  ESPNGFIFNTMMRAYIQRN-----------VPQQAICLYKLMLN--NNVGVDNYT----- 133
              N   +N +   YI+             +P++ +  +  M+    N+G D  +     
Sbjct: 165 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 224

Query: 134 -------YP-------LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
                  +P       +    + LR  V  G+ +H +V+++G D D+ V ++L +MY  C
Sbjct: 225 DMRREGMHPDEFGLGSVFRCCAGLR-DVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC 283

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-------- 231
           G L     +    P L +VS N+I+AG     + E A   +  M    + A         
Sbjct: 284 GCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAI 343

Query: 232 -------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                            ++ ++ R G + ++ R+F      D  
Sbjct: 344 SSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTF 403

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
             SA+IS Y  +   ++A+ LF  M++      +V  +++L AC++  + + G     L 
Sbjct: 404 LLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELM 463

Query: 321 VKI-GIECYINLQNALIHMYSSCGEITTAEKL-FDAGHNLDLISWNSMISGYLKCGSVEK 378
            K  G++  +     ++ +    G +  AE L        D + W +++S      + + 
Sbjct: 464 TKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDM 523

Query: 379 ARALFDAMIEKD 390
           A  +   +IE D
Sbjct: 524 AERIAKRVIELD 535


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 337/568 (59%), Gaps = 32/568 (5%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +  ++ L+    ++  A  LF ++PK++L  W+ LI  Y  N  ++ A++L+  M+D+ +
Sbjct: 85  ATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGL 144

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             D   +  VL AC+ L+ +  G S+H   +K G E  + +  ALI MY+          
Sbjct: 145 RPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYA---------- 194

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                KCG V  A  +FD ++ +D V W++M++ YAQ+    E+
Sbjct: 195 ---------------------KCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDES 233

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           +SL  EM  +G+RP EATLV+VIS+   +  L  G+ IH +  ++G + N  + T LIDM
Sbjct: 234 ISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDM 293

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G V  AL +F    EK V SWNA+I G+AM+GLA  +L++F +M+K    P+ ITF
Sbjct: 294 YAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITF 352

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           VGVL AC    L+DEG   +N M++++ + P  +HY CM+DLLG  G L EA +LI +M 
Sbjct: 353 VGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMS 412

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           + PD   WGALL +CK HG+ E+ E    KL+EL+PD  G +V+L+N++A  G+W+ V +
Sbjct: 413 VKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEK 472

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           +R +M+ + + K   CS IE    ++ FLAGD +H   + I   L  +   +   GYAPD
Sbjct: 473 LRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPD 532

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  D++++EK + +  HSE+LAIAFGLI+ SP   + I KNLRIC DCH A KFIS+
Sbjct: 533 TGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISK 592

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             +REI VRD +R+H FKHG CSC D W
Sbjct: 593 IMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 189/433 (43%), Gaps = 76/433 (17%)

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           +Y Y  L Q+     ++  GK +H      G   +  +   L+++YAV   L  AR LFD
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------P-------------------- 224
           + P  +L  WN ++ GY      + A  +Y+KM      P                    
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 225 -------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                        ER++    ++I ++ + G V +A R+F ++  +D V W+++++ Y Q
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N   +E++ L   M  + V   E  +V+V+S+ A++  +  G  +H    + G +    +
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
           + ALI MY+ CG +  A  LF+      ++SWN++I+GY   G    A  LFD M ++D 
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED- 345

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                                          RPD  T V V++AC+    LD+G+ ++  
Sbjct: 346 -------------------------------RPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 452 -IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG--- 506
            +R  G+       T +ID+    G +D A ++      K  S  W AL+    ++G   
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 507 LADKSLEMFSEMK 519
           LA+ +LE   E++
Sbjct: 435 LAELALEKLIELE 447



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 205/448 (45%), Gaps = 59/448 (13%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFT---QILSQMILTGLIADTFAAS 66
           L++   +SV++ P  +PT +       LQ C   K      Q+ +Q    G+  +   A+
Sbjct: 29  LATHQTASVDSFPP-QPTTHYGYTSL-LQSCIDSKALNPGKQLHAQFYHLGIAYNQDLAT 86

Query: 67  RLIKF---STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML 123
           +L+     S  LL       +  +F  +   N F++N ++R Y        AI LY  ML
Sbjct: 87  KLVHLYAVSNSLLN------ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKML 140

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           +  +  DN+T P + +A +   ++ EG+ IH++V+K+G++ D++V   LI+MYA CG + 
Sbjct: 141 DYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVM 200

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV------- 236
            A ++FD+  V D V WNS+LA Y    + +E+  +  +M    +  + + +V       
Sbjct: 201 DAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSA 260

Query: 237 --------------------------------LFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                           ++ + G+V  A  LF+ + +K +VSW+A
Sbjct: 261 DVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNA 320

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-I 323
           +I+ Y  + +   AL LF  M       D +  V VL+AC+   ++  G +++ L V+  
Sbjct: 321 IITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDY 379

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           GI   +     +I +   CG++  A  L  +     D   W ++++     G+VE A   
Sbjct: 380 GITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELA 439

Query: 383 FDAMIE---KDVVSWSTMISGYAQHDQF 407
            + +IE    D  ++  + + YAQ  ++
Sbjct: 440 LEKLIELEPDDSGNYVILANMYAQSGKW 467



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            S++ +C    AL+ GK +HA     G+  N  L T L+ +Y     + NA  +F    +
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPK 110

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
           + +  WN LI G+A NG  D ++ ++ +M   G+ P+  T   VL AC  +  + EG R 
Sbjct: 111 QNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG-RS 169

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +  + +   E +      ++D+  + G + +A  + + + +  D   W ++L A  ++G
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWNSMLAAYAQNG 228


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 334/559 (59%), Gaps = 33/559 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A ++F EM K  +  W+ L   Y +N++  E+L+L+  M D  V  DE     V+
Sbjct: 57  GDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVV 116

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            A + L     G ++HA  VK G  C   +   L+ MY   GE+++AE LF++    DL+
Sbjct: 117 KAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLV 176

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           +WN+ ++  ++ G+   A   F+ M    V           Q D F              
Sbjct: 177 AWNAFLAVCVQTGNSAIALEYFNKMCADAV-----------QFDSF-------------- 211

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
                 T+VS++SAC  L +L+ G+ I+   RK  +  N I+    +DM++K G  + A 
Sbjct: 212 ------TVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F   +++ V SW+ +I+G+AMNG + ++L +F+ M+  G+ PN +TF+GVL AC H G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 542 LVDEGHRHFNSMIQ--EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           LV+EG R+F+ M+Q  +  LEP  +HY CMVDLLGR+G+L+EA E I+ MP+ PD   WG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC  H D  +G++V   LVE  PD   +HVLLSNI+A+ G+WD V +VR  M + G
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
             K+   S +E  G IH F  GD++HPQ   I   LDE+ KK++  GY PDT  V  D++
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            EEKE +L  HSEKLAIAFGLI   P +PIR+MKNLR C+DCH  +KF+S     EI++R
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D++RFHHF++G CSC +FW
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 165/392 (42%), Gaps = 74/392 (18%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH  VL+ GF     +   L+    V GD+  AR++FDE     +  WN++  GYV  
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 211 DNVEEAKFIYNKMPERNI---------------------------------------IAS 231
               E+  +Y KM +  +                                       I +
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             +++++ + G ++ A  LF+ M  KDLV+W+A ++   Q      AL  F  M    V 
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D   VVS+LSAC  L  ++ G  ++  A K  I+C I ++NA + M+  CG    A  L
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVL 267

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F+     +++SW++MI G                               YA +    E L
Sbjct: 268 FEEMKQRNVVSWSTMIVG-------------------------------YAMNGDSREAL 296

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKN--GLKINSILGTTLI 468
           +LF  MQ+ G+RP+  T + V+SAC+H   +++GK +    ++ N   L+        ++
Sbjct: 297 TLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMV 356

Query: 469 DMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           D+  + G ++ A E       E     W AL+
Sbjct: 357 DLLGRSGLLEEAYEFIKKMPVEPDTGIWGALL 388



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 42/318 (13%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           KQ  +I + ++ TG        S L +   +L+   +M Y+ ++F  +  P  F++NT+ 
Sbjct: 25  KQLKKIHAIVLRTGFSEKN---SLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLF 81

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           + Y++  +P +++ LYK M +  V  D +TYP + +A +       G  +H HV+K GF 
Sbjct: 82  KGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
               V   L+ MY   G+LS+A  LF+   V DLV+WN+ LA  V   N   A   +NKM
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201

Query: 224 P---------------------------------------ERNIIASNSMIVLFGRKGNV 244
                                                   + NII  N+ + +  + GN 
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNT 261

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             A  LF+EM ++++VSWS +I  Y  N    EAL LF  M +  +  + V  + VLSAC
Sbjct: 262 EAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSAC 321

Query: 305 ANLTVVKAGTSVHALAVK 322
           ++  +V  G    +L V+
Sbjct: 322 SHAGLVNEGKRYFSLMVQ 339



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 16/198 (8%)

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           Q K IHA + + G    + L T L++  + +G +  A +VF    +  +  WN L  G+ 
Sbjct: 26  QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            N L  +SL ++ +M+  GV P+E T+  V+ A   +G    G       +  H ++   
Sbjct: 86  RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGF-----ALHAHVVKYG- 139

Query: 564 KHYGC-------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
             +GC       +V +  + G L  AE L ESM +  D+  W A L  C + G+  +   
Sbjct: 140 --FGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQTGNSAIALE 196

Query: 617 VGRKLVELQPDHDGFHVL 634
              K+       D F V+
Sbjct: 197 YFNKMCADAVQFDSFTVV 214



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 18/243 (7%)

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
           + F E+S +  +F  ++  +   +N  +   +Q      A+  +  M  + V  D++T  
Sbjct: 155 MKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVV 214

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            +  A     S+  G+ I+D   K   D ++ V N  ++M+  CG+  AAR LF+E    
Sbjct: 215 SMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQR 274

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLF 251
           ++VSW++++ GY    +  EA  ++  M       N +    ++      G V E  R F
Sbjct: 275 NVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYF 334

Query: 252 KEM---------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
             M         P+K+   ++ ++    ++ + EEA      M    V  D  +  ++L 
Sbjct: 335 SLMVQSNDKNLEPRKE--HYACMVDLLGRSGLLEEAYEFIKKM---PVEPDTGIWGALLG 389

Query: 303 ACA 305
           ACA
Sbjct: 390 ACA 392


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 315/523 (60%), Gaps = 30/523 (5%)

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNAL 335
            A   F  M+   V+ ++     +L ACA L      G   HA A+K G      + N L
Sbjct: 109 RAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTL 168

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           IHMYS  G                         G+L       AR +FD M ++  V+WS
Sbjct: 169 IHMYSCFG------------------------GGFLG-----DARNVFDRMPKESAVTWS 199

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI GY +    S+ + LF EMQ +G++ DE T++ V++A T L AL+  +W+  ++ + 
Sbjct: 200 AMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE 259

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+  +  L   LID   K G VD A+ VF G +++ V SW ++I   AM G   +++ +F
Sbjct: 260 GIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVF 319

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            EMK +GV P+++ F+GVL AC H G+VDEG  +F++M  E+ +EP  +HYGCMVD+ GR
Sbjct: 320 EEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGR 379

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AGM++ A E + +MP+ P+   W +L+ AC+ HG  E+GE + R L+   P H+  +++L
Sbjct: 380 AGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIML 439

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN+ A   RW +  E+R  M +RG+ K+PGCS++E +G +HEF+AGD +HPQ  +I  M+
Sbjct: 440 SNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMV 499

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +EMA++L+  G+   T EV  D+D+E+KE  L  HSEKLAIAF L+   P   +R++KNL
Sbjct: 500 EEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNL 559

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C+DCH A K IS+ + REIVVRDR RFH FK GSCSC DFW
Sbjct: 560 RVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 66/329 (20%)

Query: 231 SNSMIVLFG--RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           SN++I ++     G + +A  +F  MPK+  V+WSA+I  Y +  +  +A+ LF  M  +
Sbjct: 165 SNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQAN 224

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  DEV V+ VL+A  +L  ++    V     + GI   + L NALI   +        
Sbjct: 225 GVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLA-------- 276

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  KCG V+ A A+F+ M ++ VVSW+++I   A   +  
Sbjct: 277 -----------------------KCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGK 313

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E + +F EM+  G+ PD+   + V++AC+H   +D+G                       
Sbjct: 314 EAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG----------------------- 350

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
                 G  D A++V +G E K +  +  ++  F   G+ ++++E    M    + PN +
Sbjct: 351 -----CGYFD-AMKVEYGIEPK-IEHYGCMVDMFGRAGMVERAMEFVRTMP---IQPNPV 400

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
            +  ++ ACR  G ++ G     S++ E+
Sbjct: 401 IWRSLVSACRAHGRLELGESITRSLLHEY 429



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 171/379 (45%), Gaps = 50/379 (13%)

Query: 95  NGFIFNTMMRAYIQRNVPQ---QAICLYKLMLNNNVGVDNYTYPLLAQA-SALRLSVFEG 150
           + F+ NT++RA+    +     +A   + LML   V  + +T+P L +A +AL  S   G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGD--LSAARKLFDESPVLDLVSWNSILAGYV 208
              H   LK GF +D YV+NTLI+MY+  G   L  AR +FD  P    V+W++++ GYV
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206

Query: 209 ----NADNVE-----------------------------------EAKFIYNKMPERNII 229
               ++D VE                                     +F+  +   +++ 
Sbjct: 207 RGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVT 266

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N++I    + G+V  A  +F+ M ++ +VSW+++I         +EA+ +F  M    
Sbjct: 267 LCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAG 326

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           V  D+V  + VL+AC++  +V  G     A+ V+ GIE  I     ++ M+   G +  A
Sbjct: 327 VPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERA 386

Query: 349 -EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQH 404
            E +       + + W S++S     G +E   ++  +++ +     +  I   + +A  
Sbjct: 387 MEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALT 446

Query: 405 DQFSETLSLFMEMQHHGIR 423
            ++ E   +  EM   GI+
Sbjct: 447 QRWKEKSEIRREMSKRGIK 465



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 381 ALFDAMIEKDVVSWSTMISGYAQ---HDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           AL    +  D    +T+I  +A    H       + F  M    + P++ T   ++ AC 
Sbjct: 78  ALLRPSVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACA 137

Query: 438 HLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC--VDNALEVFHGTEEKGVSS 494
            L  + D G   HA   K G   +  +  TLI MY   G   + +A  VF    ++   +
Sbjct: 138 ALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVT 197

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W+A+I G+   GL+  ++E+F EM+ +GV  +E+T +GVL A   +G + E  R     +
Sbjct: 198 WSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGAL-ELARWVRRFV 256

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +   +  +      ++D L + G +  A  + E M     V +W +++ A    G  +  
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQR-SVVSWTSVIDALAMEGRGKEA 315

Query: 615 ERVGR--KLVELQPDHDGF-HVLLSNIHA 640
            RV    K+  + PD   F  VL +  HA
Sbjct: 316 VRVFEEMKVAGVPPDDVAFIGVLTACSHA 344


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/570 (40%), Positives = 345/570 (60%), Gaps = 2/570 (0%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR- 289
           SN++I ++G+ G + +A  LF ++P +D +SW+++++   Q  +    L +F  M     
Sbjct: 41  SNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDG 100

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D  V   ++ ACA L  +K G  VHA  +   +     ++++L+ MY+ CG      
Sbjct: 101 LQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGR 160

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD+  + + ISW +MISGY + G    A  LF  M  K+++SW+ +ISG  Q   + +
Sbjct: 161 VVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVD 220

Query: 410 TLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           +  LFMEM+  GI   D   L S+I A  +L  L  GK IH  +   G + +  +   L+
Sbjct: 221 SFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALV 280

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K   V  A ++F    ++ + SW ++I+G A +GLA+++L +++ M  +G+ PNE+
Sbjct: 281 DMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEV 340

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TFVG++ AC H+GLV +G   FNSMI+++ + P+ +HY C++DLL R+G L+EAE LI++
Sbjct: 341 TFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKA 400

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP  PD ATW ALL AC  H +  +G RV   L+ L+P+    ++LLSNI+AS   W+ V
Sbjct: 401 MPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESV 460

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            +VR +M    V K PG S I        FLAG+ +HP   EI  +L+E+  ++K  GY 
Sbjct: 461 SKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYI 520

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT  V  D++Q+EKE  LF HSE+LA+A+GL+   P   + I+KNLR+C DCHT  KFI
Sbjct: 521 PDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFI 580

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S    REIVVRD +R+HHFK G CSC +FW
Sbjct: 581 SIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 194/419 (46%), Gaps = 64/419 (15%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASA 142
           +  +F  L   +   + +++ A  Q N+P   + ++  M   + +  D+Y +  L +A A
Sbjct: 57  ALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACA 116

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           +  ++ +GK +H   + +    D  V ++L++MYA CG     R +FD     + +SW +
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTA 176

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           +++GY  +    +A  ++ KMP +N+++  ++I    + GN  ++  LF EM  K     
Sbjct: 177 MISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKG---- 232

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
                                  ID   +VD  ++ S++ A ANL V+  G  +H L + 
Sbjct: 233 -----------------------ID---IVDPFILSSIIGASANLAVLGLGKQIHCLVIL 266

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G E  + + NAL+ MY+ C ++  A+K+F      D++SW S+I G             
Sbjct: 267 LGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVG------------- 313

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                              AQH    E LSL+  M   G++P+E T V +I AC+H+  +
Sbjct: 314 ------------------TAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLV 355

Query: 443 DQGKW-IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALI 499
            +G++  ++ I+  G+  +    T L+D+  + G ++ A  +      K   ++W AL+
Sbjct: 356 SKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALL 414



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 30/222 (13%)

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           +V  L ACA       G  +H   +K GI+   +L N LI+MY  CG I  A  LF+   
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           + D ISW S+++   +        ++F AM ++D                          
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQD-------------------------- 99

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
               G++PD      ++ AC  L A+ QGK +HA    + +  + ++ ++L+DMY K G 
Sbjct: 100 ----GLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGL 155

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            D    VF     K   SW A+I G+A +G    ++++F +M
Sbjct: 156 PDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/732 (33%), Positives = 405/732 (55%), Gaps = 42/732 (5%)

Query: 27  TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           ++  +IL        S  Q  Q  + ++ TGL  DT  A++L+    + + F + +    
Sbjct: 13  SVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATL--- 69

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +   +  PN F F+T++ A+ + +    A+  +  ML   +  DN   P   +A A   +
Sbjct: 70  VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +   + +H     +GFDSD +V ++L++MY  C                           
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKC--------------------------- 162

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----KKDLVSW 262
               + + +A  ++++M E ++++ ++++  + R+G V EA RLF EM     + +L+SW
Sbjct: 163 ----NQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISW 218

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + +I+ +  + +Y EA+++F++M       D   + SVL A  +L  +  G  +H   +K
Sbjct: 219 NGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIK 278

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G+     + +ALI MY  C   +   ++FD   ++D+ S N+ I G  + G VE +  L
Sbjct: 279 QGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRL 338

Query: 383 F----DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           F    D  +E +VVSW++MI+  +Q+ +  E L LF EMQ  G++P+  T+  ++ AC +
Sbjct: 339 FRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGN 398

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           + AL  GK  H +  + G+  +  +G+ LIDMY K G +  +   F G   K +  WNA+
Sbjct: 399 IAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAV 458

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G+AM+G A +++E+F  M++SG  P+ I+F  VL AC   GL +EG  +FNSM  ++ 
Sbjct: 459 IAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYG 518

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +E   +HY CMV LL RAG L++A  +I  MP++PD   WGALL +C+ H +  +GE   
Sbjct: 519 IEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAA 578

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            KL EL+P + G ++LLSNI+ASKG W++V  VR MM  +G+ K PGCS IE    +H  
Sbjct: 579 EKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHML 638

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
           LAGD++HPQ+ +I   LD+++ ++K  GY P+   V  D+++++KE  L  HSEKLA+ F
Sbjct: 639 LAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVF 698

Query: 739 GLITISPPNPIR 750
           GL+   P  P++
Sbjct: 699 GLLNTPPGYPLQ 710


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/693 (35%), Positives = 369/693 (53%), Gaps = 71/693 (10%)

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + + + IH  V ++G +  + V+  L + YA  G L  A+++FD +   D+VSWN++L  
Sbjct: 241 IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGA 300

Query: 207 YVNADNVEEAKFIYNKM------P------------------------------ERNIIA 230
           Y    ++ EA  ++ +M      P                              +R+I+ 
Sbjct: 301 YAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVL 360

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N+++ ++ R G+  EA  LF+ +P  + VSW+ +I+   Q    + AL LF  M    +
Sbjct: 361 GNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGM 419

Query: 291 MVDEVVVVSVLSACAN----LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  +++L A A+       +  G  +H+  V  G      +  A++ MY+SCG I 
Sbjct: 420 APVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAID 479

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A   F  G   D                              DVVSW+ +IS  +QH  
Sbjct: 480 EAAASFQRGAMED----------------------------RHDVVSWNAIISSLSQHGH 511

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
               L  F  M  HG+ P++ T V+V+ AC    AL +G  +H ++R +G++ N  + T 
Sbjct: 512 GKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATA 571

Query: 467 LIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           L  MY + G +++A E+F     E+ V  +NA+I  ++ NGLA ++L++F  M++ G  P
Sbjct: 572 LASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRP 631

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +E +FV VL AC H GL DEG   F SM Q + + P+  HY C VD+LGRAG L +AEEL
Sbjct: 632 DEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEEL 691

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           I  M + P V  W  LLGAC+K+ D + G      + EL P  +  +V+LSNI A  G+W
Sbjct: 692 IRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKW 751

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           D+  EVR  M  RG+ K  G S IE    +HEF+AGDR+HP+  EI   L+ +  +++  
Sbjct: 752 DEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREI 811

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT  V   +D+ EKE  L +HSE+LAIA G+++ S  + +R+MKNLR+C DCH A 
Sbjct: 812 GYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNAT 870

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KFIS+  ++EIVVRD HRFHHF  GSCSC D+W
Sbjct: 871 KFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 263/570 (46%), Gaps = 86/570 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F+ LE  +   + T++ AY +    ++AI ++  M    V  D  T+  + +A A   
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + +G+ IH  ++++G +    + N L+++Y  CG +++A  LF E    DLVSWN+ +A
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLF-ERMERDLVSWNAAIA 201

Query: 206 GYVNADNVEEAKFIYNKMP------------------------------------ERNII 229
               + +++ A  ++ +M                                     E+ ++
Sbjct: 202 ANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLV 261

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S ++   + R G++ +A  +F    ++D+VSW+A++  Y Q+    EA +LF  M+   
Sbjct: 262 VSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +   +V +V+  + C++L   + G  +HA A++ G++  I L NAL+ MY+ CG    A 
Sbjct: 322 IPPSKVTLVNASTGCSSL---RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEAR 378

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            LF+ G   + +SWN+MI+G                                +Q  Q   
Sbjct: 379 HLFE-GIPGNAVSWNTMIAG-------------------------------SSQKGQMKR 406

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGT 465
            L LF  MQ  G+ P  AT ++++ A         A+ +G+ +H+ I   G      +GT
Sbjct: 407 ALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT 466

Query: 466 TLIDMYMKLGCVDNALEVFH--GTEEK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
            ++ MY   G +D A   F     E++  V SWNA+I   + +G   ++L  F  M   G
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 523 VTPNEITFVGVLGACRHMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           V PN+IT V VL AC     + EG   H H    ++   +E N      +  + GR G L
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGVIVHDH----LRHSGMESNVFVATALASMYGRCGSL 582

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHG 609
           + A E+ E + +  DV  + A++ A  ++G
Sbjct: 583 ESAREIFEKVAVERDVVIFNAMIAAYSQNG 612



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 49/382 (12%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N ++ L+ +  ++ +   +F  +  +D  SW+ +I+ Y ++   + A+ +F  M    V 
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D V  ++VL ACA L  +  G S+HA  V+ G+E    L N L+H+Y SCG + +A  L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F+     DL+SWN+ I+   + G ++ A                               L
Sbjct: 186 FERMER-DLVSWNAAIAANAQSGDLDMA-------------------------------L 213

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF  MQ  G+RP   TLV  +S C     + Q + IH+ +R++GL+   ++ T L   Y
Sbjct: 214 ELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAY 270

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            +LG +D A EVF    E+ V SWNA++  +A +G   ++  +F+ M   G+ P+++T V
Sbjct: 271 ARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLV 330

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH----YGCMVDLLGRAGMLKEAEELIE 587
                C  +         F  MI    LE            ++D+  R G  +EA  L E
Sbjct: 331 NASTGCSSL--------RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFE 382

Query: 588 SMPMSPDVATWGALLGACKKHG 609
            +P   +  +W  ++    + G
Sbjct: 383 GIP--GNAVSWNTMIAGSSQKG 402



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 7/191 (3%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RP  A LV ++ A      L QG+ IHA I   GL+    LG  L+ +Y+K   + +  E
Sbjct: 28  RP--AHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEE 83

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   E +  +SW  +I  +  +G A +++ MF  M++ GV  + +TF+ VL AC  +G 
Sbjct: 84  VFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGD 143

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           + +G R  ++ I E  LE  S     ++ + G  G +  A  L E M    D+ +W A +
Sbjct: 144 LSQG-RSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER--DLVSWNAAI 200

Query: 603 GACKKHGDHEM 613
            A  + GD +M
Sbjct: 201 AANAQSGDLDM 211



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/457 (19%), Positives = 186/457 (40%), Gaps = 87/457 (19%)

Query: 22  PIFKPTINL-SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           P+    +NL   + ++ ++ ++  +  ++ S+++  G  ++    + ++K         E
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDE 480

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
            + SF+  A  +  +   +N ++ +  Q    ++A+  ++ M  + V  +  T   +  A
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDA 540

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   ++ EG ++HDH+  +G +S+V+V   L +MY  CG L +AR++F++  V      
Sbjct: 541 CAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAV------ 594

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                   ER+++  N+MI  + + G   EA +LF  M ++   
Sbjct: 595 ------------------------ERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEG-- 628

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HAL 319
                                           DE   VSVLSAC++  +   G  +  ++
Sbjct: 629 -----------------------------SRPDEQSFVSVLSACSHGGLADEGWEIFRSM 659

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEK 378
               GI    +     + +    G +  AE+L         ++ W +++    K   V++
Sbjct: 660 RQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDR 719

Query: 379 ARALFDAMI-------EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLV 430
            R L ++M+       E   V  S +++G  + D+ +E  +   EM+  G+R     + +
Sbjct: 720 GR-LANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRT---EMESRGLRKQAGKSWI 775

Query: 431 SVISACTHLVALDQG-----------KWIHAYIRKNG 456
            + S     VA D+            + +HA IR+ G
Sbjct: 776 EIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/624 (37%), Positives = 354/624 (56%), Gaps = 44/624 (7%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNV---EEAKFIYNKMPERNIIASNSMIV 236
           GDL+ A + F  + +    ++N +LAGY  A  +    +A+ +++ +P  + ++ N+++ 
Sbjct: 26  GDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLS 85

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
                G++  A R+F  MP KD+ SW+ ++S   +N   EEA  +F      R+M     
Sbjct: 86  CHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMF------RIMP---- 135

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAG 355
                        V+   S                 NA++   +  G++  AE LF +A 
Sbjct: 136 -------------VRNAVS----------------WNAMVAALACSGDMGAAEDLFRNAP 166

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D I W +M+SGY+  G+V+KA   F AM  +++VSW+ +++GY ++ +  + L +F 
Sbjct: 167 EKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFK 226

Query: 416 EMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M    I +P+ +TL SV+  C++L AL  G+ +H +  K  L  N  +GT+L+ MY K 
Sbjct: 227 TMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKC 286

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +++A +VF     K + +WNA+I G+A +G   +++++F +MK  GV P+ IT + VL
Sbjct: 287 GDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVL 346

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GL D G + F +M + +++EP   HY CMVDLL RAG+L+ A  +I SMP  P 
Sbjct: 347 TACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPH 406

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            + +G LL AC+ + + E  E   RKL+E  P + G +V L+NI+A   +W DV  VR  
Sbjct: 407 PSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRW 466

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M    VVK PG S +E  G+ HEF + DR HPQ+  I + LD +   +K  GY PD    
Sbjct: 467 MKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFA 526

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D++   K   L RHSEKLAIAFGLI+ SP   +RI KNLRIC DCH AAK IS+  DR
Sbjct: 527 LHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDR 586

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EI++RD  RFHHF+ G CSC D+W
Sbjct: 587 EIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 169/364 (46%), Gaps = 73/364 (20%)

Query: 162 FDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           FDS    D    NTL++ +  CGD+  AR++F   PV D+ SWN++++G       EEA 
Sbjct: 69  FDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAA 128

Query: 218 FIYNKMPERNIIASNSMIVLFG--------------------------------RKGNVA 245
            ++  MP RN ++ N+M+                                      GNV 
Sbjct: 129 AMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQ 188

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSAC 304
           +A   F  MP ++LVSW+A+++ Y +N   ++AL +F  M+ D  V  +   + SVL  C
Sbjct: 189 KAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGC 248

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           +NL+ +  G  VH   +K+ +   + +  +L+ MY  CG++  A K+FD     D+++WN
Sbjct: 249 SNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWN 308

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +MISGY + G   +A  LF+                               +M+  G+ P
Sbjct: 309 AMISGYAQHGGGMQAIKLFE-------------------------------KMKDEGVVP 337

Query: 425 DEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILG--TTLIDMYMKLGCVDNAL 481
           D  TL++V++AC H    D G  I  +   +   KI   +   + ++D+  + G ++ A+
Sbjct: 338 DWITLLAVLTACIHTGLCDFG--IQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAV 395

Query: 482 EVFH 485
            + H
Sbjct: 396 NMIH 399



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLLAQAS 141
           + + F  +   N   +N ++  Y++ +    A+ ++K M+ +++   N +    +L   S
Sbjct: 190 AMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCS 249

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            L    F G+ +H   +K     +V V  +L++MY  CGDL+ A K+FDE    D+V+WN
Sbjct: 250 NLSALGF-GRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWN 308

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNII 229
           ++++GY       +A  ++ KM +  ++
Sbjct: 309 AMISGYAQHGGGMQAIKLFEKMKDEGVV 336



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 104/250 (41%), Gaps = 25/250 (10%)

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG----L 507
           +R + L +   L T  +   ++ G +  A E F  T+ K  +++N L+ G+A       L
Sbjct: 3   LRPSLLAVARPLSTVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRL 62

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
           AD +  +F  +      P+ +++  +L      G +D   R F++M  +     +   + 
Sbjct: 63  AD-ARRLFDSIPH----PDTVSYNTLLSCHFACGDIDGARRVFSTMPVK-----DVTSWN 112

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
            MV  L + G  +EA  +   MP+  +  +W A++ A    GD    E + R   E + D
Sbjct: 113 TMVSGLSKNGASEEAAAMFRIMPVR-NAVSWNAMVAALACSGDMGAAEDLFRNAPE-KTD 170

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
              +  ++S  +   G     +E  G M  R        +++  N ++  ++   R    
Sbjct: 171 AILWTAMVSG-YMDTGNVQKAMEFFGAMPVR--------NLVSWNAVVAGYVKNSRADDA 221

Query: 688 INEIDNMLDE 697
           +     M+++
Sbjct: 222 LRVFKTMVED 231


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 338/576 (58%), Gaps = 38/576 (6%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           +  +  SNS+I ++G+      + ++F EMP K+ VSWSA+I    Q++  +E   LF  
Sbjct: 42  QSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQ 101

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M+            ++L+A A +   +    V+ + V+ G++   ++Q+A   M++    
Sbjct: 102 MLSEGSRPSRG---AILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFA---- 154

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      +CG VE AR LFD ++ KD+V+W+T I  Y + 
Sbjct: 155 ---------------------------RCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
           D   E L L  +M   GI PD  TL+ VI AC+ L +      +H  I   G   N +L 
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII-TTGFFYNQLLA 246

Query: 465 --TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
             T LID+Y+K G +  A +VF G +E+ + +W+A+I G+ M+G   ++L +F +MK S 
Sbjct: 247 VETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS- 305

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V P+ ITFV +L AC H GLV EG   FNSM ++  + P  +HY CMVD+LGRAG L EA
Sbjct: 306 VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEA 365

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            + IE MP+ P+ A WGALLGAC+ H + ++ E V R L +L P + G +V+L NI+   
Sbjct: 366 CDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLT 425

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G+  +   +R +M  RGV KI G S+IE    ++ F+AGDR+HPQ + I + L+ +  ++
Sbjct: 426 GKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRI 485

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           + EGY PD   V  D+D+E KE+ L+ HSEKLAI FGL+ + P + IRI KNLR+C DCH
Sbjct: 486 RQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCH 545

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           TA KFIS+   REIVVRD HRFHHFK+G+CSC D+W
Sbjct: 546 TATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 187/419 (44%), Gaps = 75/419 (17%)

Query: 122 MLNNNVGVDNYTYPLLAQA-SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG 180
           ML   +  DN+T+P + +A S LR   F G  IH  V+K G+ S V+++N+LI MY  C 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEF-GIRIHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIASNSM 234
               +R++FDE P  + VSW++I+   +  D  +E   ++ +M      P R  I +   
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMA 119

Query: 235 IV------------------------------LFGRKGNVAEACRLFKEMPKKDLVSWSA 264
            V                              +F R G V  A +LF  +  KDLV+W+ 
Sbjct: 120 CVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
            I  Y + +M  EAL L   M+   +  D + ++ V+ AC+ L   +    VH + +  G
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGI-ITTG 238

Query: 325 I--ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
                 + ++ ALI +Y  CG +T A K+FD     ++I+W++MISGY            
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGY------------ 286

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                                H    E L+LF +M+   ++PD  T VS++SAC+H   +
Sbjct: 287 -------------------GMHGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGLV 326

Query: 443 DQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALI 499
            +G +  ++  R  G+         ++D+  + G +D A +       +   + W AL+
Sbjct: 327 AEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 56/348 (16%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           ++ AC+ L   + G  +H   VK G +  + + N+LI MY                    
Sbjct: 16  IIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYG------------------- 56

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                       KC   E +R +FD M +K+ VSWS +I    Q D+  E  SLF +M  
Sbjct: 57  ------------KCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLS 104

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G RP    +++ + AC    + ++   ++  + +NGL  +  + +    M+ + G V+ 
Sbjct: 105 EGSRPSRGAILNAM-ACVR--SHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEV 161

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A ++F G   K + +W   I  +    +  ++L +  +M   G+ P+ IT +GV+ AC  
Sbjct: 162 ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACST 221

Query: 540 M----------GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           +          G++  G  +   +  E  L          +DL  + G L  A ++ + M
Sbjct: 222 LASFQLAHIVHGIITTGFFYNQLLAVETAL----------IDLYVKCGSLTYARKVFDGM 271

Query: 590 PMSPDVATWGALLGACKKHG-DHEMGERVGRKLVELQPDHDGFHVLLS 636
               ++ TW A++     HG   E      +    ++PDH  F  +LS
Sbjct: 272 -QERNIITWSAMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILS 318



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 135/324 (41%), Gaps = 58/324 (17%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           ++ C   + F    +I   ++  G  +  F ++ LI        +     S ++F  +  
Sbjct: 17  IKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKY---ELSRQVFDEMPD 73

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N   ++ ++ A +Q +  ++   L++ ML+        +   +  A A   S  E   +
Sbjct: 74  KNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG---SRPSRGAILNAMACVRSHEEADDV 130

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           +  V++ G D D  V +    M+A CG +  ARKLFD     DLV+W + +  YV AD  
Sbjct: 131 YRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMP 190

Query: 214 EEA--------------------------------------------KFIYNKMPERNII 229
            EA                                             F YN++    + 
Sbjct: 191 LEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQL----LA 246

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              ++I L+ + G++  A ++F  M ++++++WSA+IS Y  +    EAL LF  M    
Sbjct: 247 VETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KAS 305

Query: 290 VMVDEVVVVSVLSACANLTVVKAG 313
           V  D +  VS+LSAC++  +V  G
Sbjct: 306 VKPDHITFVSILSACSHSGLVAEG 329



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           GI+PD  T   +I AC+ L   + G  IH  + K G +    +  +LI MY K    + +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            +VF    +K   SW+A+I     +    +   +F +M   G  P+    +  +   R  
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSH 124

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
              D+ +R    ++ E+ L+ +         +  R G ++ A +L + + MS D+ TW  
Sbjct: 125 EEADDVYR----VVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGI-MSKDLVTWAT 179

Query: 601 LLGA 604
            + A
Sbjct: 180 TIEA 183


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 350/575 (60%), Gaps = 41/575 (7%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RV 290
           S I+ F    ++  A R+F ++   +   W+ALI +C    +  + A+ L+  M++   V
Sbjct: 65  SRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSV 124

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           M D+     VL ACA L  +  G  +HA  +K+G +  + + N+L+H Y++         
Sbjct: 125 MQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYAT--------- 175

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                 C  ++ A+ +FD M E+ +VSW+ +I  + +  +F   
Sbjct: 176 ----------------------CDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK--NGLKINSIL-GTTL 467
           L+LF EMQ     PD  T+ S+ +AC  + +L  G W H ++ K  +  ++N +L  T+L
Sbjct: 214 LNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSL 272

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPN 526
           +DMY K G ++ AL++FH   ++ V+SWN++I+GF+ +G    +LE F  M ++  + PN
Sbjct: 273 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPN 332

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITFVGVL AC H GLV EG R+F+ M+ E++++P  +HYGC+VDLL RAG++ EA +++
Sbjct: 333 AITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVV 392

Query: 587 ESMPMSPDVATWGALLGAC-KKHGDHEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGR 644
            +MPM PD+  W +LL AC K++   E+ E + R+++E +     G +VLLS ++AS  R
Sbjct: 393 SNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASR 452

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W+DV  VR +M  +GVVK PGCS IE +G+ HEF AGD +HPQ  EI + LD + ++++ 
Sbjct: 453 WNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVER 512

Query: 705 EGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            GY+PD+ +    D   + K+ +L  HSE+LAIAFGL+   P  PIRI KNLR+CN+CH 
Sbjct: 513 VGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQ 572

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K ISR F+REI+VRDR RFHHFK G+CSCMD+W
Sbjct: 573 VTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 189/406 (46%), Gaps = 64/406 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADT---FAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L  C    Q  Q+ +Q I T         F  SR++ FS+      ++ Y+F++F  +E+
Sbjct: 33  LNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSS----LHDLRYAFRVFHQIEN 88

Query: 94  PNGFIFNTMMRAYIQR-NVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEGK 151
           PN F++N ++RA  +  +  Q AI LY  ML   +V  D +T+P + +A A   ++ EG+
Sbjct: 89  PNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGE 148

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH  +LK GFDSDVY+NN+L++ YA C  L  A+ +FD      LVSWN ++  +V   
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208

Query: 212 NVEEAKFIYNKMPE-----------------------------------------RNIIA 230
             + A  ++ +M +                                          +++ 
Sbjct: 209 EFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLL 268

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHR 289
           + S++ ++ + G++  A +LF  MPK+D+ SW+++I  +  +     AL  F  M+   +
Sbjct: 269 NTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEK 328

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTA 348
           +M + +  V VLSAC +  +V  G     + V +  I+  +     L+ + +  G I  A
Sbjct: 329 LMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEA 388

Query: 349 EKLFDAGHNL----DLISWNSMISGYLKCG-----SVEKARALFDA 385
               D   N+    DL+ W S++    K       S E AR + +A
Sbjct: 389 ---LDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEA 431


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 315/523 (60%), Gaps = 30/523 (5%)

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNAL 335
            A   F  M+   V+ ++     +L ACA L      G   HA A+K G      + N L
Sbjct: 109 RAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTL 168

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           IHMYS  G                         G+L       AR +FD M ++  V+WS
Sbjct: 169 IHMYSCFG------------------------GGFLG-----DARNVFDRMPKESAVTWS 199

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI GY +    S+ + LF EMQ +G++ DE T++ V++A T L AL+  +W+  ++ + 
Sbjct: 200 AMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE 259

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+  +  L   LID   K G VD A+ VF G +++ V SW ++I   AM G   +++ +F
Sbjct: 260 GIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVF 319

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            EMK +GV P+++ F+GVL AC H G+VDEG  +F++M  E+ +EP  +HYGCMVD+ GR
Sbjct: 320 EEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGR 379

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AGM++ A E + +MP+ P+   W +L+ AC+ HG  E+GE + R L+   P H+  +++L
Sbjct: 380 AGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIML 439

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN+ A   RW +  E+R  M +RG+ K+PGCS++E +G +HEF+AGD +HPQ  +I  M+
Sbjct: 440 SNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMV 499

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +EMA++L+  G+   T EV  D+D+E+KE  L  HSEKLAIAF L+   P   +R++KNL
Sbjct: 500 EEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNL 559

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C+DCH A K IS+ + REIVVRDR RFH FK GSCSC DFW
Sbjct: 560 RVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 66/329 (20%)

Query: 231 SNSMIVLFG--RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           SN++I ++     G + +A  +F  MPK+  V+WSA+I  Y +  +  +A+ LF  M  +
Sbjct: 165 SNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQAN 224

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  DEV V+ VL+A  +L  ++    V     + GI   + L NALI   +        
Sbjct: 225 GVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLA-------- 276

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  KCG V+ A A+F+ M ++ VVSW+++I   A   +  
Sbjct: 277 -----------------------KCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGK 313

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E + +F EM+  G+ PD+   + V++AC+H   +D+G                       
Sbjct: 314 EAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG----------------------- 350

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
                 G  D A++V +G E K +  +  ++  F   G+ ++++E    M    + PN +
Sbjct: 351 -----CGYFD-AMKVEYGIEPK-IEHYGCMVDMFGRAGMVERAMEFVRTMP---IQPNPV 400

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
            +  ++ ACR  G ++ G     S++ E+
Sbjct: 401 IWRSLVSACRAHGRLELGESITRSLLHEY 429



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 50/379 (13%)

Query: 95  NGFIFNTMMRAYIQRNVPQ---QAICLYKLMLNNNVGVDNYTYPLLAQA-SALRLSVFEG 150
           + F+ NT++RA+    +     +A   + LML   V  + +T+P L +A +AL  S   G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGD--LSAARKLFDESPVLDLVSWNSILAGYV 208
              H   LK GF +D YV+NTLI+MY+  G   L  AR +FD  P    V+W++++ GYV
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206

Query: 209 NADNVEEAKFIYNKMPERNIIAS------------------------------------- 231
                 +A  ++ +M    + A                                      
Sbjct: 207 RGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVT 266

Query: 232 --NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N++I    + G+V  A  +F+ M ++ +VSW+++I         +EA+ +F  M    
Sbjct: 267 LCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAG 326

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           V  D+V  + VL+AC++  +V  G     A+ V+ GIE  I     ++ M+   G +  A
Sbjct: 327 VPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERA 386

Query: 349 -EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQH 404
            E +       + + W S++S     G +E   ++  +++ +     +  I   + +A  
Sbjct: 387 MEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALT 446

Query: 405 DQFSETLSLFMEMQHHGIR 423
            ++ E   +  EM   GI+
Sbjct: 447 QRWKEKSEIRREMSKRGIK 465



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 381 ALFDAMIEKDVVSWSTMISGYAQ---HDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           AL    +  D    +T+I  +A    H       + F  M    + P++ T   ++ AC 
Sbjct: 78  ALLRPSVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACA 137

Query: 438 HLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC--VDNALEVFHGTEEKGVSS 494
            L  + D G   HA   K G   +  +  TLI MY   G   + +A  VF    ++   +
Sbjct: 138 ALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVT 197

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W+A+I G+   GL+  ++++F EM+ +GV  +E+T +GVL A   +G + E  R     +
Sbjct: 198 WSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGAL-ELARWVRRFV 256

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
           +   +  +      ++D L + G +  A  + E M     V +W +++ A    G  +  
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQR-SVVSWTSVIDALAMEGRGKEA 315

Query: 615 ERVGR--KLVELQPDHDGF-HVLLSNIHA 640
            RV    K+  + PD   F  VL +  HA
Sbjct: 316 VRVFEEMKVAGVPPDDVAFIGVLTACSHA 344


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/559 (42%), Positives = 339/559 (60%), Gaps = 38/559 (6%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSA 303
           +A R F E+P  + V  +A+ S Y +N +   +L LF  MI  D   +VDE   +   SA
Sbjct: 147 DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 206

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            A +       S+HAL  KIG E     +NA +                           
Sbjct: 207 SARVPDRGVTASLHALIAKIGFE-----RNAGV--------------------------V 235

Query: 364 NSMISGYLKCGS--VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-- 419
           N+M+  Y K GS  +E AR +FD M E+DVVSW++MI+ YAQ+   +E + L+ +M +  
Sbjct: 236 NTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 294

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI+ +   L +V+ AC H  A+  GK IH  + + GL+ N  +GT+++DMY K G V+ 
Sbjct: 295 GGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEM 354

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A   F   +EK + SW+A+I G+ M+G   ++LE+F+EMK+SG+ PN ITF+ VL AC H
Sbjct: 355 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 414

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL+DEG   +N+M QE  +E   +HYGCMVDLLGRAG L EA  LI+ M + PD A WG
Sbjct: 415 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 474

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC+ H + E+ E   ++L EL   + G++VLLSNI+A    W DV  +R ++  R 
Sbjct: 475 ALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRR 534

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K PG S  E  G I+ F  GD++HPQ  EI + L+++ ++++  GY P+T  V  D+D
Sbjct: 535 IEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLD 594

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEKE+ L  HSEKLA+AF L+   P + I I+KNLR+C+DCHTA KFI++  +REI++R
Sbjct: 595 EEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIR 654

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK G CSC D+W
Sbjct: 655 DLQRFHHFKDGLCSCRDYW 673



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 189/395 (47%), Gaps = 80/395 (20%)

Query: 153 IHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV--- 208
           +H   L++G F SD Y  + L++MY  C     AR+ FDE P  + V   ++ +GYV   
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNN 174

Query: 209 ----------------NADNVEEAKFIY-----NKMPERNIIAS---------------- 231
                           +A  V+EA  +       ++P+R + AS                
Sbjct: 175 LVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGV 234

Query: 232 -NSMIVLFGRKG--NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID- 287
            N+M+  + + G  ++  A ++F  M ++D+VSW+++I+ Y QN M  EA+ L+  M++ 
Sbjct: 235 VNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNV 293

Query: 288 -HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  + V + +VL ACA+   ++ G  +H   V++G+E  + +  +++ MYS CG + 
Sbjct: 294 GGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVE 353

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A + F      +++SW++MI                               +GY  H +
Sbjct: 354 MASRAFRKIKEKNILSWSAMI-------------------------------TGYGMHGR 382

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGT 465
             E L +F EM+  G+RP+  T +SV++AC+H   LD+G+ W +A  ++ G++       
Sbjct: 383 GQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYG 442

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALI 499
            ++D+  + GC+D A  +    + K  ++ W AL+
Sbjct: 443 CMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 477



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 48/352 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASAL 143
           + F  +  PN  I   M   Y++ N+   ++ L++ M+ ++    VD     +   ASA 
Sbjct: 150 RAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASAR 209

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWN 201
                    +H  + K GF+ +  V NT+++ YA  G  DL  ARK+FD +   D+VSWN
Sbjct: 210 VPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWN 268

Query: 202 SILAGYVNADNVEEAKFIYNKMP------------------------------------- 224
           S++A Y       EA  +Y+KM                                      
Sbjct: 269 SMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVV 328

Query: 225 ----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
               E N+    S++ ++ + G V  A R F+++ +K+++SWSA+I+ Y  +   +EAL 
Sbjct: 329 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 388

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMY 339
           +F  M    +  + +  +SVL+AC++  ++  G    +A+  + GIE  +     ++ + 
Sbjct: 389 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLL 448

Query: 340 SSCGEITTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
              G +  A  L  +     D   W +++S      +VE A      + E D
Sbjct: 449 GRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 500



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 17/261 (6%)

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D  S ++++  Y  C     AR  FD + + + V  + M SGY +++    +L LF  M 
Sbjct: 128 DPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM- 186

Query: 419 HHGIRPDEATLVSVISACTHLVA----LDQG--KWIHAYIRKNGLKINSILGTTLIDMYM 472
              I  D A++V   +A     A     D+G    +HA I K G + N+ +  T++D Y 
Sbjct: 187 ---IASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYA 243

Query: 473 KLGCVD--NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK--SGVTPNEI 528
           K G  D   A +VF  T E+ V SWN++I  +A NG++ +++ ++S+M     G+  N +
Sbjct: 244 KGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAV 302

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
               VL AC H G +  G R  N +++   LE N      +VD+  + G ++ A      
Sbjct: 303 ALSAVLLACAHAGAIQTGKRIHNQVVRMG-LEENVYVGTSIVDMYSKCGRVEMASRAFRK 361

Query: 589 MPMSPDVATWGALLGACKKHG 609
           +    ++ +W A++     HG
Sbjct: 362 I-KEKNILSWSAMITGYGMHG 381


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/648 (36%), Positives = 351/648 (54%), Gaps = 62/648 (9%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + +H     +G  +D +  N L+  YA  GDL+AAR+LF+  P  +++SWN +  GY+  
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
            ++  A+ ++++MPERN+                                +W+A+++   
Sbjct: 121 GDLGGARKLFDEMPERNV-------------------------------ATWNAMVAGLT 149

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
                EE+L  F++M    +  DE  + SV   CA L  V  G  VHA  V+ G++  + 
Sbjct: 150 NLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMC 209

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + ++L HMY  CG +   E +     +L ++S N++I+G  + G  E A           
Sbjct: 210 VGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGA----------- 258

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                               L  F  M+  G+  D  T VS IS+C+ L AL QG+ IH 
Sbjct: 259 --------------------LEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHG 298

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + K G+     + T L+ MY + GC+ ++  VF G         +A+I  +  +G   K
Sbjct: 299 QVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQK 358

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           ++E+F +M   G  P+++TF+ +L AC H GL +EG   F  M + + ++P+ KHY C+V
Sbjct: 359 AIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVV 418

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+G L EAE LI SMP++PD   W  LL ACK   + +M ER+ ++++EL P    
Sbjct: 419 DLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSA 478

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            +VLLSNI A+  RW DV EVR  M    V K PG S +E  G IH+F  GD +HP+  E
Sbjct: 479 SYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKE 538

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           ID  L+EM  K++  GY+PD   V  D++ EEKE +L  HSEKLAIAF  +++    PIR
Sbjct: 539 IDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIR 598

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +MKNLR+C+DCH A K +S+   REIVVRD  RFHHFK G CSC D+W
Sbjct: 599 VMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/466 (19%), Positives = 181/466 (38%), Gaps = 80/466 (17%)

Query: 2   TLATK--LAHLSSTIKSSVNAKPIFKPTI--NLSILETHL-QKCQSFKQFTQILSQMILT 56
           T+ATK     L +T +     +  F+  +  + + L +HL + C++ +   Q+ +    +
Sbjct: 11  TVATKDEFVRLCATGRLRDALRRPFRGVLWSDAARLFSHLFRACRALRPLRQLHAFAATS 70

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN------ 110
           G   D F A+ L+    DL    +++ + ++F  +   N   +N +   YI+        
Sbjct: 71  GAATDRFTANHLMLAYADL---GDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGAR 127

Query: 111 -----VPQQAICLYKLMLN--NNVGVDNYTYPLL-------------AQASALRL----- 145
                +P++ +  +  M+    N+G D  +                    S  R      
Sbjct: 128 KLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLR 187

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  G+ +H +V+++G D D+ V ++L +MY  CG L     +    P L +VS N+I+A
Sbjct: 188 DVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIA 247

Query: 206 GYVNADNVEEAKFIYNKMPERNIIAS---------------------------------- 231
           G     + E A   +  M    + A                                   
Sbjct: 248 GRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDK 307

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                  ++ ++ R G + ++ R+F      D    SA+IS Y  +   ++A+ LF  M+
Sbjct: 308 VVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMM 367

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEI 345
           +      +V  +++L AC++  + + G     L  K  G++  +     ++ +    G +
Sbjct: 368 NGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCL 427

Query: 346 TTAEKL-FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
             AE L        D + W +++S      + + A  +   +IE D
Sbjct: 428 DEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD 473


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/590 (38%), Positives = 345/590 (58%), Gaps = 33/590 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++ Y+ ++F  +       + TM+  + Q     QA+ L+K M N  V  +  T   L  
Sbjct: 147 QLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVS 206

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +    ++  +++H  V+K  F+  V V+  L+ MY VC  L  AR LFDE P  ++VS
Sbjct: 207 AYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVS 266

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           WN +L GY  A  V+ A+ ++ ++P ++                               L
Sbjct: 267 WNVMLNGYSKAGFVDSARVVFERIPNKD-------------------------------L 295

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V+W  +I  Y + E   EAL+++ +MI      ++V++V ++S C     +  G  + + 
Sbjct: 296 VTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSA 355

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            VK+G +CY  +Q+ +IH+Y++CG I  A   F  G   ++ SWN++I+GY++   +++A
Sbjct: 356 VVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRA 415

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
             LF+ M E+DV SWSTMISGY Q++Q +  L LF +M   GI+P+E T+VSV+SA    
Sbjct: 416 MELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATS 475

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG--VSSWNA 497
             L +G+W H Y+  N + ++  L   +IDMY K G ++NALEVF+   EK   VS WNA
Sbjct: 476 GTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNA 535

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G A++G A+ SL++FS++++  +  N ITF+GVL AC H+GLV+ G RHF SM  EH
Sbjct: 536 IICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEH 595

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            ++P+ KHYGCMVDLLGRAG L+EAEE+I SMPM  DV  WG LL AC+ HG+ ++GER 
Sbjct: 596 SIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERA 655

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
              L  L+P H    VLLSN++A  G+W+D   VR  M    + ++PG S
Sbjct: 656 AENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGYS 705



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/533 (27%), Positives = 259/533 (48%), Gaps = 70/533 (13%)

Query: 122 MLNNNVGVDNYTYPLLAQASALR-----LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMY 176
           +LN   G  ++ Y L+   SAL+     L + +GK IH  V K+G  S+ ++ N+LINMY
Sbjct: 53  LLNPKTGQRHFNYELVL-VSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMY 111

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236
             CG L  A+ +FD                                 P  + ++ N MI 
Sbjct: 112 GKCGLLVDAKSIFDVC-------------------------------PRSDPVSYNVMIS 140

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
            + + G +  AC LF EMP K  VS++ +I  + QNE + +A+ LF  M +  V+ +EV 
Sbjct: 141 GYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVT 200

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + +++SA ++   + A   +H L +K+  E ++ +   L+ MY  C  +  A  LFD   
Sbjct: 201 IATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMP 260

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             +++SWN M++GY K G V+ AR +F+ +  KD+V+W T+I GY + ++ +E L ++  
Sbjct: 261 EKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRS 320

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M   G  P++  +V +IS C   +A+ +G+ + + + K G      + +T+I +Y   G 
Sbjct: 321 MISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGR 380

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK---------------- 520
           ++ A   F    ++ V+SWNALI G+  N + D+++E+F+EM +                
Sbjct: 381 INEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQN 440

Query: 521 ---------------SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
                          SG+ PNE+T V VL A    G + EG R  +  +  + +  +   
Sbjct: 441 EQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG-RWAHEYVHNNSITVSDNL 499

Query: 566 YGCMVDLLGRAGMLKEAEELI-ESMPMSPDVATWGALLGACKKHGDHEMGERV 617
              ++D+  + G +  A E+  E    +  V+ W A++     HG   +  ++
Sbjct: 500 SAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKI 552


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 360/639 (56%), Gaps = 77/639 (12%)

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-------- 195
           +LS    + +H  V+K+GF +++++ N LI+ Y+ CG L   R++FD+ P          
Sbjct: 33  KLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSV 92

Query: 196 -----------------------DLVSWNSILAGYVNADNVEEA----------KFIYNK 222
                                  D  +WNS+++G+   D  EEA           F+ N+
Sbjct: 93  VTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNE 152

Query: 223 MPERNIIAS-----------------------------NSMIVLFGRKGNVAEACRLFKE 253
               +++++                             ++++ ++ + GNV +A R+F E
Sbjct: 153 YSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDE 212

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M  +++VSW++LI+C+EQN    EAL +F  M++ RV  DEV + SV+SACA+L+ +K G
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

Query: 314 TSVHALAVK-IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
             VH   VK   +   I L NA + MY+ C  I  A  +FD+    ++I+  SMISGY  
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
             S + AR +F  M E++VVSW+ +I+GY Q+ +  E LSLF  ++   + P   +  ++
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINS------ILGTTLIDMYMKLGCVDNALEVFHG 486
           + AC  L  L  G   H ++ K+G K  S       +G +LIDMY+K GCV+    VF  
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+   SWNA+IIGFA NG  +++LE+F EM +SG  P+ IT +GVL AC H G V+EG
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG 512

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             +F+SM ++  + P   HY CMVDLLGRAG L+EA+ +IE MPM PD   WG+LL ACK
Sbjct: 513 RHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACK 572

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H +  +G+ V  KL+E++P + G +VLLSN++A  G+W+DV+ VR  M + GV K PGC
Sbjct: 573 VHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGC 632

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           S I+  G  H F+  D++HP+  +I ++LD +  +++ E
Sbjct: 633 SWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 134/557 (24%), Positives = 243/557 (43%), Gaps = 120/557 (21%)

Query: 10  LSSTIKSSVNAKPIFKPTINLSILETHLQ--------------KCQSFKQFTQILSQMIL 55
           L S IKS ++A  I+   ++ S++++                 KC S +   Q+  +M  
Sbjct: 26  LDSCIKSKLSA--IYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQ 83

Query: 56  TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
             +       + L K     L F++ + S  +F  +   +   +N+M+  + Q +  ++A
Sbjct: 84  RNIYTWNSVVTGLTK-----LGFLDEADS--LFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           +C + +M      ++ Y++  +  A +    + +G  +H  + K+ F SDVY+ + L++M
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGY--------------------VNADNVEE 215
           Y+ CG+++ A+++FDE    ++VSWNS++  +                    V  D V  
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 216 A--------------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           A                    + + N     +II SN+ + ++ +   + EA  +F  MP
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 256 -------------------------------KKDLVSWSALISCYEQNEMYEEALVLFMN 284
                                          ++++VSW+ALI+ Y QN   EEAL LF  
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +    V        ++L ACA+L  +  G   H   +K G +                  
Sbjct: 377 LKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK------------------ 418

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                  F +G   D+   NS+I  Y+KCG VE+   +F  M+E+D VSW+ MI G+AQ+
Sbjct: 419 -------FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSIL 463
              +E L LF EM   G +PD  T++ V+SAC H   +++G+ +  +  R  G+      
Sbjct: 472 GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531

Query: 464 GTTLIDMYMKLGCVDNA 480
            T ++D+  + G ++ A
Sbjct: 532 YTCMVDLLGRAGFLEEA 548



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 62/280 (22%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK----IFAFLESP 94
           KC   K+   I   M +  +IA+T            ++    M+ S K    +F  +   
Sbjct: 301 KCSRIKEARFIFDSMPIRNVIAET-----------SMISGYAMAASTKAARLMFTKMAER 349

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +N ++  Y Q    ++A+ L+ L+   +V   +Y++  + +A A    +  G   H
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAH 409

Query: 155 DHVLKAGF------DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            HVLK GF      + D++V N+LI+MY  CG +     +F +    D VSWN+++ G+ 
Sbjct: 410 VHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFA 469

Query: 209 -----------------------------------NADNVEEAKFIYNKMPERNIIAS-- 231
                                              +A  VEE +  ++ M     +A   
Sbjct: 470 QNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLR 529

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                M+ L GR G + EA  + +EMP + D V W +L++
Sbjct: 530 DHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/812 (32%), Positives = 420/812 (51%), Gaps = 76/812 (9%)

Query: 27   TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
            +++L I    L K +S  +  QI+ Q+I +GL +     + LI    ++     + Y+  
Sbjct: 263  SMSLVISSCGLLKDESLGR--QIIGQVIKSGLESKLAVENSLISMFGNMG---NVDYANY 317

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
            IF  +   +   +N+++ AY Q    +++  ++ LM   +  V++ T   L         
Sbjct: 318  IFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDH 377

Query: 147  VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
               G+ IH  V+K GFDS V V NTL+ MYA  G    A  +F + P  DL+SWNS++A 
Sbjct: 378  QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMAS 437

Query: 207  YVNADNVEEAKFIYNKM---------------------PE------------------RN 227
            +VN     +A  I   M                     PE                   N
Sbjct: 438  FVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDN 497

Query: 228  IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
             I  N+++ ++G+ G ++ + R+  +MP++D+V+W+ALI  Y +NE  ++AL  F  +  
Sbjct: 498  QIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRV 557

Query: 288  HRVMVDEVVVVSVLSAC-ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V  + + VVSVLSAC     +++ G  +HA  V  G E   +++N+LI MY+      
Sbjct: 558  EGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA------ 611

Query: 347  TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                     KCG +  ++ LF+ +  + +++W+ +++  A H  
Sbjct: 612  -------------------------KCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGH 646

Query: 407  FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
              E L L  +M+  G+  D+ +    +SA   L  L++G+ +H    K G +++  +   
Sbjct: 647  GEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNA 706

Query: 467  LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
              DMY K G +   +++   +  + + SWN LI     +G  ++  E F EM + G+ P 
Sbjct: 707  AADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPG 766

Query: 527  EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             +TFV +L AC H GLVD+G  +++ + ++  LEP  +H  C++DLLGR+G L EAE  I
Sbjct: 767  HVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFI 826

Query: 587  ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
              MPM P+   W +LL +CK H D + G +    L +L+P+ D   VL SN+ A+ GRW+
Sbjct: 827  SKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWE 886

Query: 647  DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            DV  VR  M  + + K   CS ++    +  F  GDRTHPQ  EI   L+++ K +K  G
Sbjct: 887  DVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESG 946

Query: 707  YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
            Y  DT +   D D+E+KE  L+ HSE+LA+A+ L++    + +RI KNLRIC+DCH+  K
Sbjct: 947  YVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYK 1006

Query: 767  FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            F+SR   R IV+RD++RFHHF+ G CSC D+W
Sbjct: 1007 FVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 146/566 (25%), Positives = 254/566 (44%), Gaps = 72/566 (12%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   +NTMM   ++  +  + +  ++ M +  +   ++    L  A     S
Sbjct: 115 LFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGS 174

Query: 147 VF-EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +F EG  +H  V K+G  SDVYV+  ++++Y V G +S +RK+F+E P  ++VSW S++ 
Sbjct: 175 MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 234

Query: 206 GYVNADNVEEAKFIYNKMP---------------------------------------ER 226
           GY +    EE   IY  M                                        E 
Sbjct: 235 GYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLES 294

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +   NS+I +FG  GNV  A  +F ++ ++D +SW+++++ Y QN   EE+  +F  M 
Sbjct: 295 KLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMR 354

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                V+   V ++LS   ++   K G  +H L VK+G +  + + N L+ MY+  G   
Sbjct: 355 RFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR-- 412

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                         E+A  +F  M  KD++SW+++++ +    +
Sbjct: 413 -----------------------------SEEADLVFKQMPTKDLISWNSLMASFVNDGR 443

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             + L +   M   G   +  T  S ++AC      D+G+ +H  +  +GL  N I+G  
Sbjct: 444 SLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNA 503

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ MY K+G +  +  V      + V +WNALI G+A N   DK+L  F  ++  GV+ N
Sbjct: 504 LVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSAN 563

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            IT V VL AC   G + E  +  ++ I     E +      ++ +  + G L  +++L 
Sbjct: 564 YITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 623

Query: 587 ESMPMSPDVATWGALLGACKKHGDHE 612
             +  +  + TW A+L A   HG  E
Sbjct: 624 NGLD-NRSIITWNAILAANAHHGHGE 648



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/640 (23%), Positives = 303/640 (47%), Gaps = 86/640 (13%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F++  Q+   +  +GL++D + ++ ++        +  +S S K+F  +   N   + ++
Sbjct: 176 FREGVQVHGFVAKSGLLSDVYVSTAILHLYG---VYGLVSCSRKVFEEMPDRNVVSWTSL 232

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           M  Y  +  P++ I +YK M    V  +  +  L+  +  L      G+ I   V+K+G 
Sbjct: 233 MVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGL 292

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +S + V N+LI+M+   G++  A  +F++    D +SWNSI+A Y    ++EE+  I+N 
Sbjct: 293 ESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNL 352

Query: 223 M----PERN-----------------------------------IIASNSMIVLFGRKGN 243
           M     E N                                   +   N+++ ++   G 
Sbjct: 353 MRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 412

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
             EA  +FK+MP KDL+SW++L++ +  +    +AL +  +MI     V+ V   S L+A
Sbjct: 413 SEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAA 472

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C +      G  +H L V  G+     + NAL+ MY   G ++T+ ++       D+++W
Sbjct: 473 CFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAW 532

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N++I G                               YA+++   + L+ F  ++  G+ 
Sbjct: 533 NALIGG-------------------------------YAENEDPDKALAAFQTLRVEGVS 561

Query: 424 PDEATLVSVISACTHLVA---LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            +  T+VSV+SAC  LV    L++GK +HAYI   G + +  +  +LI MY K G + ++
Sbjct: 562 ANYITVVSVLSAC--LVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSS 619

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F+G + + + +WNA++   A +G  ++ L++ S+M+  G++ ++ +F   L A   +
Sbjct: 620 QDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKL 679

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATW 598
            +++EG +  + +  +   E +   +    D+  + G   E  E+++ +P S +  + +W
Sbjct: 680 AVLEEG-QQLHGLAVKLGFELDCFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSW 735

Query: 599 GALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
             L+ A  +HG  E       +++E+  +P H  F  LL+
Sbjct: 736 NILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLT 775



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
           L ++  N++I+ Y K G V+ AR LFD M  ++ VSW+TM+SG  +   + E +  F +M
Sbjct: 91  LSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKM 150

Query: 418 QHHGIRPDEATLVSVISACTHLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
              GI+P    + S+++AC    ++  +G  +H ++ K+GL  +  + T ++ +Y   G 
Sbjct: 151 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGL 210

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           V  + +VF    ++ V SW +L++G++  G  ++ ++++  M+  GV  NE +   V+ +
Sbjct: 211 VSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISS 270

Query: 537 CRHMGLV-DEG-HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
           C   GL+ DE   R     + +  LE        ++ + G  G +  A  +   +    D
Sbjct: 271 C---GLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQIS-ERD 326

Query: 595 VATWGALLGACKKHGDHEMGERV 617
             +W +++ A  ++G  E   R+
Sbjct: 327 TISWNSIVAAYAQNGHIEESSRI 349


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/571 (40%), Positives = 328/571 (57%), Gaps = 33/571 (5%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + TM+    Q N   +AI ++K M    V  +  T   +  A +    +   +++H    
Sbjct: 152 YTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSF 211

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G ++   V   L++MY VC  L  AR LFDE                           
Sbjct: 212 KLGLEALNIVATNLVHMYCVCSSLGNARVLFDE--------------------------- 244

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
               +PERN++  N M+  + + G V  A  LF+ +P KD+VSW  +I  Y Q E   EA
Sbjct: 245 ----IPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEA 300

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           L ++ +M+   V  +EV++V ++SAC     V  G   H + V+ G +CY  +Q  +IH 
Sbjct: 301 LRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHF 360

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y++CGEI  A   F+ G    + SWN++ISG+++ G +E+AR LFD M E+DV SWS+MI
Sbjct: 361 YAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMI 420

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           SGY+Q++Q    L LF EM   G++P+E T+VSV SA   L  L +G+W H YI  N + 
Sbjct: 421 SGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIP 480

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK--GVSSWNALIIGFAMNGLADKSLEMFS 516
           +N  L   LIDMY K G +  AL++F+  +++   VS WNA+I G AM+G A+ SL++FS
Sbjct: 481 LNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFS 540

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           ++++  + PN ITF+GVL AC H GLVD G ++F  M   + +EPN KHYGCM+DLLGRA
Sbjct: 541 QLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRA 600

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G LKEA E+I  MPM  DV  WG LL AC+ HG+ E+GER    L +L   H    VLLS
Sbjct: 601 GRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLS 660

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           NI+A  GRWDD   VR  M  + + K PGCS
Sbjct: 661 NIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 203/419 (48%), Gaps = 68/419 (16%)

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E+ +VS L +C++L  +  G  +H+L  K G+   I ++N+LI  Y  C  I+ A  LFD
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
               LD +S N M++GY+K GS++ AR LF+ M  K  VS++TM+ G AQ++ + E + +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F +M+  G+ P+E TL SVISA +H+  +   + +HA   K GL+  +I+ T L+ MY  
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCV 231

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD------------------------ 509
              + NA  +F    E+ V +WN ++ G++ +GL D                        
Sbjct: 232 CSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGY 291

Query: 510 -------KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-------------- 548
                  ++L M+  M ++GV PNE+  V ++ AC     V EG +              
Sbjct: 292 VQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYD 351

Query: 549 -------HFNSMIQEHRL-----EPNSK----HYGCMVDLLGRAGMLKEAEELIESMPMS 592
                  HF +   E  L     E  SK     +  ++    R GM+++A +L + MP  
Sbjct: 352 FIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMP-E 410

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHA----SKGRW 645
            DV +W +++    ++   ++  ++  ++V   +QP+      + S I       +GRW
Sbjct: 411 RDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRW 469


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/689 (34%), Positives = 378/689 (54%), Gaps = 71/689 (10%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +G ++H +++K GF +   V N LI+ YA    +  A  +FDE P  D++SWNSI+ G  
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 209 NADNVEEAKFIYNKM-PERNIIASNSMI----------------VLFG---RKGNVAEAC 248
           +    ++A  ++ +M  E   + S +++                V+ G   R G ++E  
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 249 -------------------RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
                              ++F+ M +K++VSW+A+I+ Y +   +++   LF  M    
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D   + S L A A    +K G SVH  A++ GIE  + + NAL+ MY          
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMY---------- 231

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                                +KCG +E+AR +FD + +KD +SW+T+I GY++ +  +E
Sbjct: 232 ---------------------VKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANE 270

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
             +LF EM    +RP+  T+  ++ A   L +L++G+ +HAY  + G   ++ +   L+D
Sbjct: 271 AFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVD 329

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY+K G +  A  +F     K + SW  +I G+ M+G    ++ +F +MK SG+ P+  +
Sbjct: 330 MYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGS 389

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F  +L AC H GL DEG R FN+M  EHR+EP  KHY CMVDLL   G LKEA E IE+M
Sbjct: 390 FSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETM 449

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P+ PD + W +LL  C+ H + ++ E+V   + EL+P++ G++VLL+NI+A   RW+ V 
Sbjct: 450 PIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVR 509

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           +++  +  RG+ +  GCS IE  G  H F A +R HPQ   I   LD++A++++ EG+ P
Sbjct: 510 KLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDP 569

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
                    D    +  L  HS KLA+AFG++ +S   PIR+ KN R+C+ CH AAKFIS
Sbjct: 570 KKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFIS 629

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   REI++RD +RFHHF+ G CSC  +W
Sbjct: 630 KMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 210/480 (43%), Gaps = 80/480 (16%)

Query: 87  IFAFLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +  F E P   I  +N+++       +  +A+ L+  M      +D+ T   +  A    
Sbjct: 39  LMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQS 98

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
              F G ++H + ++ G  S+  + N L++MY+ C D  +  K+F      ++VSW +++
Sbjct: 99  HYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMI 158

Query: 205 AGYVNADNVEEAKFIYNKM------PE----------------------------RNII- 229
             Y  A + ++   ++ +M      P+                            RN I 
Sbjct: 159 TSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIE 218

Query: 230 ----ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                +N+++ ++ + G + EA  +F  + KKD +SW+ LI  Y ++ +  EA  LF  M
Sbjct: 219 EVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM 278

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +  ++  + V +  +L A A+L+ ++ G  +HA AV+ G      + NAL+ MY  CG +
Sbjct: 279 L-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGAL 337

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A +LFD   N +LISW  MI+GY                                 H 
Sbjct: 338 LLARRLFDMLTNKNLISWTIMIAGY-------------------------------GMHG 366

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG- 464
           +  + ++LF +M+  GI+PD  +  +++ AC+H    D+G W      +N  +I   L  
Sbjct: 367 RGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG-WRFFNAMRNEHRIEPKLKH 425

Query: 465 -TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMN---GLADKSLEMFSEMK 519
              ++D+    G +  A E       E   S W +L+ G  ++    LA+K  EM  E++
Sbjct: 426 YACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELE 485



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 43/292 (14%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + TGLI++T   + L+   ++   +   +   KIF  +E  N   +  M+ +Y +     
Sbjct: 112 VRTGLISETSLGNALLDMYSNCSDWRSTN---KIFRNMEQKNVVSWTAMITSYTRAGHFD 168

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +   L++ M    +  D +       A A   S+  GK +H + ++ G +  + V N L+
Sbjct: 169 KVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALM 228

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-----P---- 224
            MY  CG +  AR +FD     D +SWN+++ GY  ++   EA  ++N+M     P    
Sbjct: 229 EMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVT 288

Query: 225 ------------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                         E N +A N+++ ++ + G +  A RLF  +
Sbjct: 289 MACILPAAASLSSLERGREMHAYAVRRGYLEDNFVA-NALVDMYVKCGALLLARRLFDML 347

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
             K+L+SW+ +I+ Y  +    +A+ LF  M    +  D     ++L AC++
Sbjct: 348 TNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSH 399


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/792 (33%), Positives = 402/792 (50%), Gaps = 90/792 (11%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
           G  +D F  + LI     +   +    + K+F  +   NG  +  ++  Y Q  +P+ A 
Sbjct: 30  GFDSDLFLCNTLINVYVRIGDCVS---ARKLFDEMPDRNGVTWACLISGYTQNGMPEDAC 86

Query: 117 CLYKLMLNNNVGVDNYTYPLLAQASALR------LSVFEGKLIHDHVLKAGF-DSDVYVN 169
            + K M+      + +     A  SA+R      L   +G+ +H + ++ G  D+ V V 
Sbjct: 87  GVLKEMI-----FEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N LINMYA CGD+  AR +F      D VSWNS++ G       E+A   YN M +  ++
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 230 ---------------------------------------ASNSMIVLFGRKGNVAEACRL 250
                                                   SN+++ L+     +AE  ++
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 251 FKEMPKKDLVSWSALISCY-EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           F  M ++D VSW+ +I    +      EA+ +F+ M+      + V  +++L+  ++L+ 
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            K    +HAL +K  ++    ++NAL+  Y   GE+                        
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIENALLACYGKSGEM------------------------ 357

Query: 370 YLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
                  E    +F  M E+ D VSW++MISGY  ++   + + L   M   G R D  T
Sbjct: 358 -------ENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFT 410

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             +V+SAC  +  L+ G  +HA   +  L+ + ++G+ L+DMY K G +D A   F+   
Sbjct: 411 FATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMP 470

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + + SWN++I G+A +G  D +L +F+ MK SG  P+ ITFVGVL AC H+GLVDEG  
Sbjct: 471 VRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFE 530

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
           +F SM + + L P  +HY CMVDLLGRAG L + E  I  MP+ P++  W  +LGAC + 
Sbjct: 531 YFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRG 590

Query: 609 GDH--EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
                E+G R    L  + P +   +VLLSN++AS G+W+D+   R  M    V K  GC
Sbjct: 591 NGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGC 650

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S +     +H F+AGD +HP+   I   L E+ KK++  GY P      +D++ E KE  
Sbjct: 651 SWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEEL 710

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLA+AF ++T +   PIRIMKNLR+C DCH+A K+IS+  DR IV+RD +RFHH
Sbjct: 711 LSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHH 769

Query: 787 FKHGSCSCMDFW 798
           F+ G CSC D+W
Sbjct: 770 FEDGKCSCRDYW 781



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 135/532 (25%), Positives = 241/532 (45%), Gaps = 76/532 (14%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           +  L H +VLK GFDSD+++ NTLIN+Y   GD  +ARKLFDE P  + V+W  +++GY 
Sbjct: 18  DANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYT 77

Query: 209 NADNVEEAKFIYNKM------PER-----------------------------------N 227
                E+A  +  +M      P R                                    
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N +I ++ + G++  A  +F  M  KD VSW+++I+  +QN+ +E+A+  + +M  
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +M     ++S LS+CA+L  +  G   H   +K+G++  +++ N L+ +Y+    +  
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
            +K+F      D +SWN++I      G+                                
Sbjct: 258 CQKVFSWMLERDQVSWNTVIGALADSGA------------------------------SV 287

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           SE + +F+EM   G  P+  T +++++  + L        IHA I K  +K ++ +   L
Sbjct: 288 SEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENAL 347

Query: 468 IDMYMKLGCVDNALEVFHG-TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           +  Y K G ++N  E+F   +E +   SWN++I G+  N L  K++++   M + G   +
Sbjct: 348 LACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLD 407

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF  VL AC  +  ++ G       I+   LE +      +VD+  + G +  A    
Sbjct: 408 CFTFATVLSACATVATLECGMEVHACAIRAC-LESDVVIGSALVDMYSKCGRIDYASRFF 466

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKLVELQPDHDGFHVLLS 636
             MP+  ++ +W +++    +HG  +   R+    KL    PDH  F  +LS
Sbjct: 467 NLMPVR-NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLS 517


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/743 (35%), Positives = 396/743 (53%), Gaps = 80/743 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+++  Y       Q   L+ LM       D YT   +  A A + +V  G  IH  V+
Sbjct: 171 WNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVV 230

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K GF+++  V N+LI+M +  G L  AR +FD     D VSWNS++AG+V      EA  
Sbjct: 231 KLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFE 290

Query: 219 IYNKM------PERNIIAS---------------------------------NSMIVLFG 239
            +N M      P     AS                                  +++V   
Sbjct: 291 TFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALT 350

Query: 240 RKGNVAEACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           +   + +A  LF  M   + +VSW+A+IS Y QN   ++A+ LF  M    V  +     
Sbjct: 351 KCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYS 410

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++L+    + +    + +HA  +K                Y     + TA  L DA    
Sbjct: 411 TILTVQHAVFI----SEIHAEVIKTN--------------YEKSSSVGTA--LLDA---- 446

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
                      ++K G++  A  +F+ +  KDV++WS M++GYAQ  +  E   +F ++ 
Sbjct: 447 -----------FVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLT 495

Query: 419 HHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSIL--GTTLIDMYMKLG 475
             GI+P+E T  S+I+ACT   A ++QGK  HAY  K  L++N+ L   ++L+ +Y K G
Sbjct: 496 REGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAKRG 553

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +++A E+F   +E+ + SWN++I G+A +G A K+LE+F EM+K  +  + ITF+GV+ 
Sbjct: 554 NIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVIS 613

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H GLV +G  +FN MI +H + P  +HY CM+DL  RAGML +A ++I  MP  P  
Sbjct: 614 ACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAA 673

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
             W  +L A + H + E+G+    K++ L+P H   +VLLSNI+A+ G W + + VR +M
Sbjct: 674 TVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLM 733

Query: 656 VRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVA 715
            +R V K PG S IE     + FLAGD +HP  + I + L E+  +L+  GY PDT  V 
Sbjct: 734 DKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVF 793

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            DI+ E+KET L  HSE+LAIAFGLI   P  P++I+KNLR+C DCH+  K +S    R 
Sbjct: 794 HDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRY 853

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           IVVRD +RFHHFK G CSC D+W
Sbjct: 854 IVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/550 (24%), Positives = 250/550 (45%), Gaps = 76/550 (13%)

Query: 100 NTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLK 159
           N ++  Y + +  Q+A+ L+  +  + +  D+YT   +    A   +   G+ +H   +K
Sbjct: 71  NQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK 130

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-NADN------ 212
            G    + V N+L++MY   G++   R++FDE    D+VSWNS+L GY  N  N      
Sbjct: 131 CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWEL 190

Query: 213 -----VEEAKFIYNKMP---------------------------ERNIIASNSMIVLFGR 240
                VE  +  Y  +                            E   +  NS+I +  +
Sbjct: 191 FCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSK 250

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G + +A  +F  M  KD VSW+++I+ +  N    EA   F NM             SV
Sbjct: 251 SGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASV 310

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD- 359
           + +CA+L  +     +H   +K G+    N+  AL+   + C EI  A  LF   H +  
Sbjct: 311 IKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQS 370

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           ++SW +MISGYL+ G  ++A                               ++LF  M+ 
Sbjct: 371 VVSWTAMISGYLQNGDTDQA-------------------------------VNLFSLMRR 399

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G++P+  T  ++++   H V + +   IHA + K   + +S +GT L+D ++K+G + +
Sbjct: 400 EGVKPNHFTYSTILTV-QHAVFISE---IHAEVIKTNYEKSSSVGTALLDAFVKIGNISD 455

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A++VF   E K V +W+A++ G+A  G  +++ ++F ++ + G+ PNE TF  ++ AC  
Sbjct: 456 AVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTA 515

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
                E  + F++   + RL         +V L  + G ++ A E+ +      D+ +W 
Sbjct: 516 PTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWN 574

Query: 600 ALLGACKKHG 609
           +++    +HG
Sbjct: 575 SMISGYAQHG 584



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 199/425 (46%), Gaps = 42/425 (9%)

Query: 221 NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
           N + + +++A N+  +L  R  +   A +LF + P +DL   + L+  Y + +  +EAL 
Sbjct: 31  NPLLQSHVVALNARTLL--RDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALH 88

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF+++    +  D   +  VLS CA       G  VH   VK G+  ++++ N+L+ MY+
Sbjct: 89  LFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYT 148

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          K G+V   R +FD M ++DVVSW+++++G
Sbjct: 149 -------------------------------KTGNVRDGRRVFDEMGDRDVVSWNSLLTG 177

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           Y+ +    +   LF  MQ  G RPD  T+ +VI+A  +  A+  G  IHA + K G +  
Sbjct: 178 YSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETE 237

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
            ++  +LI M  K G + +A  VF   E K   SWN++I G  +NG   ++ E F+ M+ 
Sbjct: 238 RLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQL 297

Query: 521 SGVTPNEITFVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           +G  P   TF  V+ +C   + +GLV    R  +    +  L  N      ++  L +  
Sbjct: 298 AGAKPTHATFASVIKSCASLKELGLV----RVLHCKTLKSGLSTNQNVLTALMVALTKCK 353

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
            + +A  L   M     V +W A++    ++GD +    +   +    ++P+H  +  +L
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 636 SNIHA 640
           +  HA
Sbjct: 414 TVQHA 418



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 131/275 (47%), Gaps = 45/275 (16%)

Query: 80  EMSYSFKIFAFLESPNGFI-FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
           E+  +F +F+ +      + +  M+  Y+Q     QA+ L+ LM    V  +++TY  + 
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
               ++ +VF  + IH  V+K  ++    V   L++ +   G++S A K+F+     D++
Sbjct: 414 ---TVQHAVFISE-IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVI 469

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNI------------------------------ 228
           +W+++LAGY  A   EEA  I++++    I                              
Sbjct: 470 AWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAY 529

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                       S+S++ L+ ++GN+  A  +FK   ++DLVSW+++IS Y Q+   ++A
Sbjct: 530 AIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKA 589

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           L +F  M    + VD +  + V+SACA+  +V  G
Sbjct: 590 LEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKG 624


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/835 (31%), Positives = 427/835 (51%), Gaps = 116/835 (13%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI-KFSTDLLPFIEMSYSFKIFA 89
           S+L+T L   ++  Q   + S +I +GL      + +LI K++    P   +S    +F 
Sbjct: 24  SLLKT-LSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS----VFR 78

Query: 90  FLESPNG-FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
            +   N  +++N+++RA     +  QA+  Y  M    +  D +T+P +  + A  L + 
Sbjct: 79  SISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE 138

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            G ++H+H ++ GF+SD+Y+ N LI+MY+   DL  AR +F+E    D VSWNS+++GY 
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198

Query: 209 NADNVEEAKFIYNK------MPE---------------------------------RNII 229
           +    E+A  +Y+K      +P+                                  ++I
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N ++ ++ +   + EA R+F +M  KD V+W+ +I  Y Q   +E ++ LFM+MID  
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGF 318

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D + + S + AC     ++ G  VH   +  G EC     N LI MY+ CG++  A+
Sbjct: 319 V-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQ 377

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----------------------- 386
           ++FD     D ++WNS+I+GY + G  ++    F  M                       
Sbjct: 378 EVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 387 ---------------IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH----------- 420
                           E +++  ++++  YA+  +  + L +F  M  H           
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 421 --------------------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
                               G+ PDEAT++ ++  C+ L    QGK IH YI K+G + N
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESN 557

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             +G  LI+MY K G ++N ++VF   +EK V +W ALI  F M G   K+L+ F +M+ 
Sbjct: 558 VPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMEL 617

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
           SGV P+ + F+  + AC H G+V EG R F+ M  ++ LEP  +HY C+VDLL R+G+L 
Sbjct: 618 SGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLA 677

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           +AEE I SMPM PD + WGALL AC+  G+  + +RV +K++EL  D  G++VL+SNI+A
Sbjct: 678 QAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYA 737

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + G+WD V  VR  M  +G+ K PG S IE    ++ F  GD++  Q +++ ++L+ + +
Sbjct: 738 TLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVR 797

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
            +  EGY  D      D+++++K   L  HSE+LAIAFGL+   P +P+ I   L
Sbjct: 798 LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLIFPTL 852


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/607 (38%), Positives = 356/607 (58%), Gaps = 53/607 (8%)

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           +AGY       EA+ +++KMPE N I+ N ++  + + G ++EA ++F +MP++++VSW+
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           A+I  Y Q  + EEA +LF  M +  V+              + TV+  G          
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVV--------------SWTVMLGG---------- 96

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
                      LI      G +  A +LFD     D+++  +MI G    G + +AR +F
Sbjct: 97  -----------LIE----DGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIF 141

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFS-------------ETLSLFMEMQHHGIRPDEATLV 430
           D M +++VV+W++MISG      +S             E L+LF  MQ  G+RP   +++
Sbjct: 142 DEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVI 201

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           SV+S C  L +LD G+ +H+ + ++   I+  + + LI MY+K G +  A  VF     K
Sbjct: 202 SVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK 261

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            +  WN++I G+A +G  +K+LE+F +M  S + P+EITF+GVL AC + G V EG   F
Sbjct: 262 DIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIF 321

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            SM  +++++P ++HY CMVDLLGRAG L EA  LIE+MP+  D   WGALLGAC+ H +
Sbjct: 322 ESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKN 381

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            ++ E   +KL++L+P++ G ++LLSN+++S+ RW DV+E+R  M  + + K PGCS IE
Sbjct: 382 LDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIE 441

Query: 671 ANGIIHEFLAGDRT-HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
            +  +H F  G  T HP+   I   L ++   L+  GY PD   V  D+D+EEK  +L  
Sbjct: 442 VDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRD 501

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLA+A+GL+ +    PIR+MKNLR+C D H+  K I++   REI++RD +RFHHFK 
Sbjct: 502 HSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKD 561

Query: 790 GSCSCMD 796
           G CSC D
Sbjct: 562 GLCSCSD 568



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 155/320 (48%), Gaps = 75/320 (23%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-- 227
           N L++ Y   G +S ARK+FD+ P  ++VSW +++ GYV    +EEA+ ++ +MPERN  
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 228 -----------------------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                        ++AS +MI     +G + EA  +F EMP+++
Sbjct: 89  SWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRN 148

Query: 259 LVSWSALIS-------------CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +V+W+++IS              YE+     EAL LF  M    V      V+SVLS C 
Sbjct: 149 VVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCG 208

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
           +L  +  G  VH+  V+   +  I + + LI MY  CG++ TA+++FD   + D++ WNS
Sbjct: 209 SLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNS 268

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +I+GY + G  EKA  +F                    HD FS +++           PD
Sbjct: 269 IIAGYAQHGFGEKALEVF--------------------HDMFSSSIA-----------PD 297

Query: 426 EATLVSVISACTHLVALDQG 445
           E T + V+SAC++   + +G
Sbjct: 298 EITFIGVLSACSYTGKVKEG 317



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 20/219 (9%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP----LLAQASALRLSVFEGKLIH 154
           ++TM++ Y ++    +A+ L+ LM    V     ++P    +L+   +L  S+  G+ +H
Sbjct: 165 WSTMIKIYERKGFELEALALFSLMQREGV---RPSFPSVISVLSVCGSL-ASLDHGRQVH 220

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             ++++ FD D+YV++ LI MY  CGDL  A+++FD     D+V WNSI+AGY      E
Sbjct: 221 SQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGE 280

Query: 215 EAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS-----WSAL 265
           +A  +++ M   +I    I    ++      G V E   +F+ M  K  V      ++ +
Sbjct: 281 KALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACM 340

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +    +     EA+ L  NM    V  D +V  ++L AC
Sbjct: 341 VDLLGRAGKLNEAMNLIENM---PVEADAIVWGALLGAC 376


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 356/622 (57%), Gaps = 42/622 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADN-VEEAKFIYNKMPERNIIASNSMIVLF 238
           GDL+ A + F  +P     ++N +LAGY  A   + +A+ +++++P  ++++ N++++  
Sbjct: 31  GDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCH 90

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
              G+   A RLF  MP +D+ SW+ ++S   ++   EEA V+F+               
Sbjct: 91  FASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFL--------------- 135

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHN 357
                              A+ V+  +       NA++  ++  G+++TAE+ F +A   
Sbjct: 136 -------------------AMPVRNSVS-----WNAMVSGFACSGDMSTAEEWFRNAPEK 171

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D + W +M+SGY+  G+V KA   F+AM  +++VSW+ +++GY ++    + L LF  M
Sbjct: 172 EDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM 231

Query: 418 -QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
            +   ++P+ +TL SV+  C++L AL  GK IH +  K  L  N  +GT+L+ MY K G 
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGD 291

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A  +F     + V +WNA+I G+A +G   +++ +F  MK  GV PN ITFV VL A
Sbjct: 292 LSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTA 351

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL D G + F  M + + +EP   HY CMVDLL RAG L+ A + I SMP  P  +
Sbjct: 352 CIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPS 411

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            +G LL AC+ + + E  E    KL+E  P   G +V L+NI+A   +WDDV  VR  M 
Sbjct: 412 AYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMK 471

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
              VVK PG S IE  G++HEF + DR HPQ+  I   L ++A+++K  GY PD   V  
Sbjct: 472 DNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLH 531

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D+D+  K   L RHSEKLAIAFGLI+ +    +RI KNLR+C DCH AAK IS   DREI
Sbjct: 532 DVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREI 591

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           ++RD  RFHHF+ G CSC D+W
Sbjct: 592 ILRDTTRFHHFRGGHCSCDDYW 613



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 150/314 (47%), Gaps = 64/314 (20%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           DV   NTL+  +   GD   AR+LF   PV D+ SWN++++G   +  VEEAK ++  MP
Sbjct: 79  DVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP 138

Query: 225 ERNIIASNSMIVLFGRK--------------------------------GNVAEACRLFK 252
            RN ++ N+M+  F                                   GNV +A + F+
Sbjct: 139 VRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFE 198

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVK 311
            MP ++LVSW+A+++ Y +N   ++AL LF  M+ +  V  +   + SVL  C+NL+ + 
Sbjct: 199 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 258

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H   +K+ +   + +  +L+ MY  CG++++A  LF   H  D+++WN+MISGY 
Sbjct: 259 FGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGY- 317

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                         AQH    E ++LF  M+  G+ P+  T V 
Sbjct: 318 ------------------------------AQHGDGKEAINLFERMKDEGVEPNWITFVV 347

Query: 432 VISACTHLVALDQG 445
           V++AC H    D G
Sbjct: 348 VLTACIHTGLCDFG 361



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYP-LLAQAS 141
           + K F  +   N   +N ++  Y++ +    A+ L++ M+   NV  +  T   +L   S
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            L    F GK IH   +K     ++ V  +L++MY  CGDLS+A  LF E    D+V+WN
Sbjct: 253 NLSALGF-GKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWN 311

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNI 228
           ++++GY    + +EA  ++ +M +  +
Sbjct: 312 AMISGYAQHGDGKEAINLFERMKDEGV 338


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 339/562 (60%), Gaps = 38/562 (6%)

Query: 243 NVAEACRLFKEMPKK-DLVSWSALISCYEQNEMY----EEALVLFMNMIDHRVMVDEVVV 297
           ++A A ++F  +P   D+V ++ L+  Y +        EEA  +F+ M++  V  D    
Sbjct: 82  HLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTF 141

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+L ACA+    + G   H +AVK G   +  +   LI+MY+                 
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA----------------- 184

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                         +CG V  AR +FD M  + VVS++ MI+   +     E L LF EM
Sbjct: 185 --------------ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM 230

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q  G++P   TL+SV+SAC  L AL+ G+WIH YIRK  L     + T LIDMY K G +
Sbjct: 231 QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSL 290

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A+ VF   E +   +W+ +++ +A +G   +++ MF EMKK G+ P+++TF+GVL AC
Sbjct: 291 EDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYAC 350

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H G+V EG ++F+SM +E+ +    KHYGC+ DLL R+G L+ A + I+ +P+ P    
Sbjct: 351 SHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAIL 409

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           W  LL AC  HGD +MG+RV  +++EL   H G +V+ SN+ A+ GRW+++  VR +M  
Sbjct: 410 WRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSE 469

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV-AF 716
           +GVVK+PGCS IE + ++HEF AGD +HP   E   M+DE+ ++LKL GY P+T  V   
Sbjct: 470 KGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHV 529

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           ++ +EEK T+L  HSEKLAI+FGL+  +P   +RI+KNLR+C DCH+ AK +S  F+R I
Sbjct: 530 EMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRI 589

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           ++RD +RFHHF+ G CSC D+W
Sbjct: 590 ILRDLNRFHHFEDGVCSCGDYW 611



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 219/524 (41%), Gaps = 78/524 (14%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTG--LIADTFAASRLIKFSTDL---LPFIEMSYSFKI 87
           L  +L  C S +   Q+ +  +  G  L A     +RL+   T+     P   ++Y+ ++
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAP-AHLAYARQV 89

Query: 88  FAFLESPNGFI-FNTMMRAYIQRN----VPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           F  +  P   + +NT++R Y +        ++A  ++  M+   V  D YT+  L +A A
Sbjct: 90  FDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACA 149

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +  EG+  H   +KAG     YV  TLINMYA CGD+ AAR +FD      +VS+N+
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASN------------------------------ 232
           ++   V +    EA  ++ +M  + +  ++                              
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 233 ---------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                    ++I ++ + G++ +A  +F++M  +D  +WS ++  Y  +    EA+ +F 
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFE 329

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  D+V  + VL AC++  +V  G        + GI   I     +  + +  G
Sbjct: 330 EMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSG 389

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWST 396
           ++  A K  D        I W +++S     G V+  + +F+ ++E       D V +S 
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           + +   + ++ +    L  E             V  +  C+   +++    +H +   +G
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKG-----------VVKVPGCS---SIEIDNMVHEFFAGDG 495

Query: 457 LKINSILGTTLIDMYMK----LGCVDNALEVFH---GTEEKGVS 493
              +S     ++D  ++    +G V N   VFH   G EEK  S
Sbjct: 496 SHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/694 (35%), Positives = 371/694 (53%), Gaps = 71/694 (10%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ + + IH  V ++G +  + V+  L + YA  G L  A+++FD +   D+VSWN++L 
Sbjct: 240 TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLG 299

Query: 206 GYVNADNVEEAKFIYNKM------P------------------------------ERNII 229
            Y    ++ EA  ++ +M      P                              +R+I+
Sbjct: 300 AYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIV 359

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N+++ ++ R G+  EA  LFK +P  + VSW+ +I+   Q    + A+ LF  M    
Sbjct: 360 LGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEG 418

Query: 290 VMVDEVVVVSVLSACAN----LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +       +++L A A+       +  G  +H+  V  G      +  A++ MY+SCG I
Sbjct: 419 MAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAI 478

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A   F  G   D                              DVVSW+ +IS  +QH 
Sbjct: 479 DEAAASFQRGAMED----------------------------RHDVVSWNAIISSLSQHG 510

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
                L  F  M  HG+ P++ T V+V+ AC    AL +G+ +H ++R +G++ N  + T
Sbjct: 511 HGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVAT 570

Query: 466 TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
            L  MY + G +++A E+F     E+ V  +NA+I  ++ NGLA ++L++F  M++ G  
Sbjct: 571 ALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSR 630

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+E +FV VL AC H GL DEG   F SM Q + + P+  HY C VD+LGRAG L +AEE
Sbjct: 631 PDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEE 690

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LI  M + P V  W  LLGAC+K+ D + G      + EL P  +  +V+LSNI A  G+
Sbjct: 691 LIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGK 750

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD+  EVR  M  RG+ K  G S IE    +HEF+AGDR+HP+  EI   L+ +  +++ 
Sbjct: 751 WDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIRE 810

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GY PDT  V   +D+ EKE  L +HSE+LAIA G+++ S  + +R+MKNLR+C DCH A
Sbjct: 811 IGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNA 869

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KFIS+  ++EIVVRD HRFHHF  GSCSC D+W
Sbjct: 870 TKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 258/570 (45%), Gaps = 86/570 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F+ LE  +   + T++ AY +    ++AI ++  M    V  D  T+  + +A A   
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            + +G+ IH  ++++G      + N L+++Y  CG +++A  LF E    DLVSWN+ +A
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLF-EKMERDLVSWNAAIA 201

Query: 206 GYVNADNVEEAKFIYNKMP------------------------------------ERNII 229
               + ++  A  ++ +M                                     E+ ++
Sbjct: 202 ANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLV 261

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            S ++   + R G++ +A  +F    ++D+VSW+A++  Y Q+    EA +LF  M+   
Sbjct: 262 VSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +   +V +V+  + C++L   + G  +H  A++ G++  I L NAL+ MY+ CG    A 
Sbjct: 322 ISPSKVTLVNASTGCSSL---RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEAR 378

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            LF      + +SWN+MI+G                                +Q  Q   
Sbjct: 379 HLFKR-IPCNAVSWNTMIAG-------------------------------SSQKGQMKR 406

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGT 465
            + LF  MQ  G+ P  AT ++++ A         A+ +G+ +H+ I   G      +GT
Sbjct: 407 AVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT 466

Query: 466 TLIDMYMKLGCVDNALEVFH--GTEEK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
            ++ MY   G +D A   F     E++  V SWNA+I   + +G   ++L  F  M   G
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 523 VTPNEITFVGVLGACRHMGLVDEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           V PN+IT V VL AC     + EG   H H    ++   +E N      +  + GR G L
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGEIVHDH----LRHSGMESNLFVATALASMYGRCGSL 582

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHG 609
           + A E+ E + +  DV  + A++ A  ++G
Sbjct: 583 ESAREIFEKVAVERDVVIFNAMIAAYSQNG 612



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 175/382 (45%), Gaps = 49/382 (12%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N ++ L+ +  ++ +   +F  +  +D  SW+ +I+ Y ++   + A+ +F  M    V 
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D V  ++VL ACA L  +  G S+HA  V+ G++    L N L+H+Y SCG + +A  L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F+     DL+SWN+                                I+  AQ       L
Sbjct: 186 FEKMER-DLVSWNA-------------------------------AIAANAQSGDLGIAL 213

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF  MQ  G+RP   TLV  ++ C     + Q + IH  +R++GL+   ++ T L   Y
Sbjct: 214 ELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAY 270

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            +LG +  A EVF    E+ V SWNA++  +A +G   ++  +F+ M   G++P+++T V
Sbjct: 271 ARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLV 330

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQ----EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
                C  +         F  MI     E  L+ +      ++D+  R G  +EA  L +
Sbjct: 331 NASTGCSSL--------RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFK 382

Query: 588 SMPMSPDVATWGALLGACKKHG 609
            +P   +  +W  ++    + G
Sbjct: 383 RIPC--NAVSWNTMIAGSSQKG 402



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RP  A LV ++ A      L QG+ IHA I   GL+    LG  L+ +Y+K   + +  E
Sbjct: 28  RP--AHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEE 83

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   E +  +SW  +I  +  +G A +++ MF  M++ GV  + +TF+ VL AC  +G 
Sbjct: 84  VFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGD 143

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           + +G R  ++ I E  L+  S     ++ + G  G +  A  L E   M  D+ +W A +
Sbjct: 144 LSQG-RSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFE--KMERDLVSWNAAI 200

Query: 603 GACKKHGD 610
            A  + GD
Sbjct: 201 AANAQSGD 208



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/457 (19%), Positives = 188/457 (41%), Gaps = 87/457 (19%)

Query: 22  PIFKPTINL-SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE 80
           P+    +NL   + ++ ++ ++  +  ++ S+++  G  ++    + ++K         E
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDE 480

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
            + SF+  A  +  +   +N ++ +  Q    ++A+  ++ M  + V  +  T   +  A
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDA 540

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   ++ EG+++HDH+  +G +S+++V   L +MY  CG L +AR++F++  V      
Sbjct: 541 CAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAV------ 594

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                   ER+++  N+MI  + + G   EA +LF  M ++   
Sbjct: 595 ------------------------ERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEG-- 628

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HAL 319
                                           DE   VSVLSAC++  +   G  +  ++
Sbjct: 629 -----------------------------SRPDEQSFVSVLSACSHGGLADEGWEIFRSM 659

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEK 378
               GI    +     + +    G +  AE+L         ++ W +++    K   V++
Sbjct: 660 RQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDR 719

Query: 379 ARALFDAMI-------EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLV 430
            R L ++M+       E   V  S +++G  + D+ +E  +   EM+  G+R +   + +
Sbjct: 720 GR-LANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRT---EMESRGLRKEAGKSWI 775

Query: 431 SVISACTHLVALDQG-----------KWIHAYIRKNG 456
            + S     VA D+            + +HA IR+ G
Sbjct: 776 EIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 335/572 (58%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +++ +N+++ ++ + G++ EA ++F +MP++D V+W+ LIS Y Q++   +ALVLF  M+
Sbjct: 85  DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQML 144

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                 +E  + SV+ A A       G  +H   VK G +  +++ +AL+ +Y+      
Sbjct: 145 RFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT------ 198

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    + G ++ A+ +FDA+  ++ VSW+ +I+G+A+   
Sbjct: 199 -------------------------RYGLMDDAQLVFDALESRNDVSWNALIAGHARRCG 233

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             + L LF  M   G RP   +  S+  AC+    L+QGKW+HAY+ K+G K+ +  G T
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 293

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G + +A ++F    ++ V SWN+L+  +A +G  ++++  F EM++ G+ PN
Sbjct: 294 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EI+F+ VL AC H GL+DEG  H+  ++++  +   + HY  +VDLLGRAG L  A   I
Sbjct: 354 EISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFI 412

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E MP+ P  A W ALL AC+ H + E+G      + EL PD  G HV+L NI+AS GRW+
Sbjct: 413 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 472

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   VR  M   GV K P CS +E    IH F+A D  HPQ  EI    +E+  K+K  G
Sbjct: 473 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 532

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V   +DQ+E+E  L  HSEK+A+AF L+   P + I I KN+R+C DCH+A K
Sbjct: 533 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIK 592

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S+A  REI+VRD +RFHHFK G+CSC D+W
Sbjct: 593 LASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 195/413 (47%), Gaps = 71/413 (17%)

Query: 127 VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186
           + VD   Y  L +   +   + +G+++H H++++ F  D+ +NNTL+NMYA CG L  AR
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEAR 106

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--------------------PER 226
           K+FD+ P  D V+W ++++GY   D   +A  ++N+M                     ER
Sbjct: 107 KVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAER 166

Query: 227 -------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS 267
                              N+   ++++ L+ R G + +A  +F  +  ++ VSW+ALI+
Sbjct: 167 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 226

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            + +    E+AL LF  M+            S+  AC++   ++ G  VHA  +K G + 
Sbjct: 227 GHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 286

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
                N L+ MY+  G I  A K+FD     D++SWNS                      
Sbjct: 287 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS---------------------- 324

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
                    +++ YAQH   +E +  F EM+  GIRP+E + +SV++AC+H   LD+G  
Sbjct: 325 ---------LLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWH 375

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            +  ++K+G+ + +    T++D+  + G ++ AL        E   + W AL+
Sbjct: 376 YYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 153/340 (45%), Gaps = 45/340 (13%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE---MSYS 84
           ++     T L+KC  FK  TQ     I+ G +  +     L+  +T L  + +   +  +
Sbjct: 49  VDRRFYNTLLKKCTVFKLLTQ---GRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEA 105

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            K+F  +   +   + T++  Y Q + P  A+ L+  ML      + +T   + +A+A  
Sbjct: 106 RKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAE 165

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                G  +H   +K GFDS+V+V + L+++Y   G +  A+ +FD     + VSWN+++
Sbjct: 166 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 225

Query: 205 AGYVNADNVEEAKFIYNKMPERNI------------------------------------ 228
           AG+      E+A  ++  M                                         
Sbjct: 226 AGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               A N+++ ++ + G++ +A ++F  + K+D+VSW++L++ Y Q+    EA+  F  M
Sbjct: 286 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEM 345

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
               +  +E+  +SVL+AC++  ++  G   + L  K GI
Sbjct: 346 RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 385



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 125/258 (48%), Gaps = 18/258 (6%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           +++  CT    L QG+ +H ++ ++  + + ++  TL++MY K G ++ A +VF    E+
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
              +W  LI G++ +     +L +F++M + G +PNE T   V+ A         GH+  
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ-L 174

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL-GACKKHG 609
           +    +   + N      ++DL  R G++ +A+ + +++    DV +W AL+ G  ++ G
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SWNALIAGHARRCG 233

Query: 610 DHEMGERVGRKLVE-LQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRG--VVK 662
             +  E     L E  +P H  +  L     ++    +G+W     V   M++ G  +V 
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKW-----VHAYMIKSGEKLVA 288

Query: 663 IPGCSMIE---ANGIIHE 677
             G ++++    +G IH+
Sbjct: 289 FAGNTLLDMYAKSGSIHD 306



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 42/222 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  LES N   +N ++  + +R   ++A+ L++ ML       +++Y  L  A +    
Sbjct: 209 VFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGF 268

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H +++K+G     +  NTL++MYA  G +  ARK+FD     D+VSWNS+L  
Sbjct: 269 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 328

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN---------------------------------- 232
           Y       EA   + +M  R  I  N                                  
Sbjct: 329 YAQHGFGNEAVCWFEEM-RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVL 387

Query: 233 ------SMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
                 +++ L GR G++  A R  +EMP +   + W AL++
Sbjct: 388 EAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 429



 Score = 41.2 bits (95), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 9/186 (4%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           KIF  L   +   +N+++ AY Q     +A+C ++ M    +  +  ++  +  A +   
Sbjct: 309 KIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSG 368

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS-WNSIL 204
            + EG   ++ + K G   + +   T++++    GDL+ A +  +E P+    + W ++L
Sbjct: 369 LLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF------GRKGNVAEACRLFKE--MPK 256
                  N E   +    + E +       ++L+      GR  + A   +  KE  + K
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 257 KDLVSW 262
           +   SW
Sbjct: 489 EPACSW 494


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/510 (44%), Positives = 306/510 (60%), Gaps = 35/510 (6%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  D      VL ACA L   + G  +H+L  K+G +  + +QN LIH            
Sbjct: 83  VSPDHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHF----------- 128

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                               Y  CG ++ A   F+ M E+D+VSWS+MI+ +A++    E
Sbjct: 129 --------------------YGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 410 TLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            L+LF  MQ  G ++PDE  ++SV+SA + L  L+ GKWI  +I +NGL+    LGT L+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DM+ + GC++ ++ VF    E+ V +W ALI G A++G + ++L MF EM+  G  P+ +
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF GVL AC H GLV EG   F S+  E+ +EP  +HYGCMVDLLGRAG+L EA + ++ 
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDG 348

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+ P+   W  LLGAC  H   E+ E+V  K+ EL   HDG +VLLSN++   GRW + 
Sbjct: 349 MPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEK 408

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR  M  + + K PGCS+I  N +IHEF+AGD  HPQ   I   L  M   LK+ GY 
Sbjct: 409 AGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYT 468

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PD   V FDI++EEKE+TL  HSEKLA+AF L+       IR+MKNLRIC+DCH   K+ 
Sbjct: 469 PDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYA 528

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S  F+REI++RDR+RFHHF  GSCSC D+W
Sbjct: 529 SDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 174/385 (45%), Gaps = 47/385 (12%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ ++++ TG      A  RL+       P   +SY+  IF  +  P+ F FNT++RA+ 
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAP-ASLSYARSIFDLIAFPDTFAFNTIIRAHA 64

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
             +         K+ +   V  D++T+P + +A A RL    G  +H  + K GFDSDVY
Sbjct: 65  DSSPSFSLSLFSKMTMAG-VSPDHFTFPFVLKACA-RLQT--GLDLHSLLFKLGFDSDVY 120

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           V N LI+ Y  CG L  A K F+E P  DLVSW+S++A +       EA  ++ +M    
Sbjct: 121 VQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVG 180

Query: 224 ---PERNIIAS---------------------------------NSMIVLFGRKGNVAEA 247
              P+  I+ S                                  +++ +F R G + E+
Sbjct: 181 TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEES 240

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            R+F EM ++++++W+ALI+    +    EAL +F  M +H    D V    VL AC++ 
Sbjct: 241 MRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 308 TVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNS 365
            +V  G  V  ++  + G+E        ++ +    G +  A K  D      + I W +
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 366 MISGYLKCGSVEKARALFDAMIEKD 390
           ++   +    +E A  + + + E D
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELD 385



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 9/261 (3%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
            S+  AR++FD +   D  +++T+I  +A             +M   G+ PD  T   V+
Sbjct: 36  ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMTMAGVSPDHFTFPFVL 94

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC  L     G  +H+ + K G   +  +   LI  Y   G +D AL+ F    E+ + 
Sbjct: 95  KACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLV 151

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
           SW+++I  FA NG   ++L +F  M+  G V P+E+  + V+ A   +G ++ G +    
Sbjct: 152 SWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRG 210

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            I  + LE        +VD+  R G ++E+  + + M    +V TW AL+     HG   
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHGRSA 269

Query: 613 MGERVGRKLVE--LQPDHDGF 631
              R+  ++     QPDH  F
Sbjct: 270 EALRMFYEMRNHGFQPDHVTF 290


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/754 (33%), Positives = 399/754 (52%), Gaps = 72/754 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  ++  N F ++ ++  Y+Q  + Q+A+ +YK M+   + +D YT   +  A    L
Sbjct: 23  QVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTKLL 82

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSIL 204
            V EG+++     + GF+ DV V  +LI+++A CG L  A  +F     + D++S  +++
Sbjct: 83  DVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMI 142

Query: 205 AGYVNADNVEEAKFIYNKMPER-------------------------------------- 226
             YV     + A   Y KM  +                                      
Sbjct: 143 GAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHF 202

Query: 227 -NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            NI   N++I ++ + G++ ++  LF  M  KD+VSW+A+I+ Y      ++A  LF  M
Sbjct: 203 GNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRM 262

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                  D     S+L ACA+   ++ G  +H      G +    +QN LI M++     
Sbjct: 263 CTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFT----- 317

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     +CGS+E AR  F ++ +K++ +W+TM++ YAQ D
Sbjct: 318 --------------------------RCGSLESARRYFYSIEKKELGAWNTMLAAYAQFD 351

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
           +  + L L+  M   G  PD  T  SV+ +C  L AL +GK+IH      G + + ILGT
Sbjct: 352 KGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGT 411

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L++MY K G + +A + F G   K V SW+A+I   A +G A+++LE+   M   G+  
Sbjct: 412 ALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQ 471

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE+T   VL AC H G + EG  +F  + Q+  +E + ++    +DLLGRAG LKEAE +
Sbjct: 472 NEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHV 531

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           + +MP          LLG CK HGD   G+ + +++V L+P++ G +VLL+N++A+ GRW
Sbjct: 532 LHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRW 591

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK-L 704
           DDV ++R  M ++GV +  GCS IE    I+EF  GD ++P+  EI   L+ +  ++K  
Sbjct: 592 DDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEE 651

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
           EGY PDT +V  D+  ++KE  L  HSEK+A+ FGLIT  P + +RI+KNLR+C+DCHT 
Sbjct: 652 EGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTV 711

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K  S+   R I+VRD  RFHHF+ G CSC D+W
Sbjct: 712 GKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 214/488 (43%), Gaps = 73/488 (14%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D ++ N +I MY  C     AR++FD     +  SW+ ++  YV     +EA  +Y +M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 225 ---------------------------------------ERNIIASNSMIVLFGRKGNVA 245
                                                  E++++ + S+I LF + G + 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 246 EACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           EA  +F+ M   +D++S +A+I  Y ++   + AL  +  M    +  D     ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           ++   +  G  +H   ++      I+++NALI MY+                        
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYA------------------------ 216

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
                  KCGS++ +++LF  M  KDVVSW+ MI+ Y  +    +  SLF  M   G  P
Sbjct: 217 -------KCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTP 269

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  T  S++ AC     L+ G+ +H  I   G   +  +   LI M+ + G +++A   F
Sbjct: 270 DIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYF 329

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
           +  E+K + +WN ++  +A       +L ++  M   G TP+  TF  V+ +C  +G + 
Sbjct: 330 YSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALR 389

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG +  +        E +      +V++  + G L +A++  + +  + DV +W A++ A
Sbjct: 390 EG-KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAA 447

Query: 605 CKKHGDHE 612
             +HG  E
Sbjct: 448 SAQHGHAE 455



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 166/384 (43%), Gaps = 44/384 (11%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S  +F  ++  +   +N M+ AY      + A  L+  M       D YT+  +  A A 
Sbjct: 224 SKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACAS 283

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              + +G+++H  +   GFD D  + N LI+M+  CG L +AR+ F      +L +WN++
Sbjct: 284 PKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTM 343

Query: 204 LAGYVNADNVEEAKFIYNKM------PER------------------------------- 226
           LA Y   D  ++A F+Y  M      P+R                               
Sbjct: 344 LAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGF 403

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
             ++I   +++ ++ + G++A+A + F  +  KD+VSWSA+I+   Q+   EEAL L   
Sbjct: 404 EKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHL 463

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCG 343
           M    +  +EV   SVL AC++   +  G      L+   GIE         I +    G
Sbjct: 464 MNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAG 523

Query: 344 EITTAEK-LFDAGHNLDLISWNSMISGYLKCGSVEKARALFD---AMIEKDVVSWSTMIS 399
            +  AE  L      +  ++  +++ G    G V + +AL     A+  ++  S+  + +
Sbjct: 524 WLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNN 583

Query: 400 GYAQHDQFSETLSLFMEMQHHGIR 423
            YA   ++ +   L   M+  G++
Sbjct: 584 MYAAAGRWDDVAKLRRYMRKKGVK 607



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           ++ L   +I MY K    ++A +VF   +++   SW+ L+  +  N +  ++LE++ EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           +  ++ +  T   VL AC  +  V+EG R      +E   E +      ++ L  + G L
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCL 119

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPD 627
           +EAE +  SM    D+ +  A++GA  +HG +++      K+    L+PD
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPD 169


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/794 (32%), Positives = 423/794 (53%), Gaps = 100/794 (12%)

Query: 53   MILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
            ++ TGL+ D F  + L+ F      F+  + + ++F  +   N   +N+M+R +      
Sbjct: 568  VVKTGLVEDVFVGNALVSF-YGTHGFV--TDALQLFDIMPERNLVSWNSMIRVFSDNGFS 624

Query: 113  QQAICLYKLMLNNN--------VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS 164
            +++  L   M+  N        V       P+ A+   + L    GK +H   +K   D 
Sbjct: 625  EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL----GKGVHGWAVKLRLDK 680

Query: 165  DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----------------- 207
            ++ +NN L++MY+ CG ++ A+ +F  +   ++VSWN+++ G+                 
Sbjct: 681  ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 740

Query: 208  -----VNADNVE-------------------------EAKFIYNKMPERNIIASNSMIVL 237
                 V AD V                          + +F+YN++       +N+ +  
Sbjct: 741  AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL------VANAFVAS 794

Query: 238  FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
            + + G+++ A R+F  +  K + SW+ALI  + Q+     +L   + M    ++ D   V
Sbjct: 795  YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 854

Query: 298  VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
             S+LSAC+ L  ++ G  VH   ++  +E                               
Sbjct: 855  CSLLSACSKLKSLRLGKEVHGFIIRNWLE------------------------------- 883

Query: 358  LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             DL  + S++S Y+ CG +   +ALFDAM +K +VSW+T+I+GY Q+      L +F +M
Sbjct: 884  RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 943

Query: 418  QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
              +GI+    +++ V  AC+ L +L  G+  HAY  K+ L+ ++ +  +LIDMY K G +
Sbjct: 944  VLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSI 1003

Query: 478  DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
              + +VF+G +EK  +SWNA+I+G+ ++GLA +++++F EM+++G  P+++TF+GVL AC
Sbjct: 1004 TQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 1063

Query: 538  RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI-ESMPMSPDVA 596
             H GL+ EG R+ + M     L+PN KHY C++D+LGRAG L +A  ++ E M    DV 
Sbjct: 1064 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 1123

Query: 597  TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
             W +LL +C+ H + EMGE+V  KL EL+P+    +VLLSN++A  G+W+DV +VR  M 
Sbjct: 1124 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMN 1183

Query: 657  RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
               + K  GCS IE N  +  F+ G+R      EI ++   +  K+   GY PDT+ V  
Sbjct: 1184 EMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQH 1243

Query: 717  DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
            D+ +EEK   L  HSEKLA+ +GLI  S    IR+ KNLRIC DCH AAK IS+  +REI
Sbjct: 1244 DLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREI 1303

Query: 777  VVRDRHRFHHFKHG 790
            VVRD  RFHHFK+G
Sbjct: 1304 VVRDNKRFHHFKNG 1317



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 235/532 (44%), Gaps = 76/532 (14%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           LL QAS  R  +  G+ IH  V  +    +D  +   +I MYA+CG    +R +FD    
Sbjct: 444 LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 503

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM-------PE---------------------- 225
            +L  WN++++ Y   +  +E    + +M       P+                      
Sbjct: 504 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 563

Query: 226 -----------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                       ++   N+++  +G  G V +A +LF  MP+++LVSW+++I  +  N  
Sbjct: 564 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 623

Query: 275 YEEALVLFMNMI----DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            EE+ +L   M+    D   M D   +V+VL  CA    +  G  VH  AVK+ ++  + 
Sbjct: 624 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 683

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L NAL+ MYS CG IT A+ +F   +N +++SWN+M+ G+   G        FD + +  
Sbjct: 684 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH---GTFDVLRQ-- 738

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                 M++G                     ++ DE T+++ +  C H   L   K +H 
Sbjct: 739 ------MLAG------------------GEDVKADEVTILNAVPVCFHESFLPSLKELHC 774

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           Y  K     N ++    +  Y K G +  A  VFHG   K V+SWNALI G A +     
Sbjct: 775 YSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRL 834

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           SL+   +MK SG+ P+  T   +L AC  +  +  G +  +  I  + LE +   Y  ++
Sbjct: 835 SLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG-KEVHGFIIRNWLERDLFVYLSVL 893

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            L    G L   + L ++M     + +W  ++    ++G  +    V R++V
Sbjct: 894 SLYIHCGELCTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALGVFRQMV 944



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/569 (22%), Positives = 258/569 (45%), Gaps = 79/569 (13%)

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALRL 145
            +F  L S N F +N ++ +Y +  +  + +  +  M++  ++  D++TYP + +A A   
Sbjct: 497  VFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMS 556

Query: 146  SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
             V  G  +H  V+K G   DV+V N L++ Y   G ++ A +LFD  P  +LVSWNS++ 
Sbjct: 557  DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 616

Query: 206  GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
             + +    EE+  +  +M E N                                      
Sbjct: 617  VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKL 676

Query: 228  -----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                 ++ +N+++ ++ + G +  A  +FK    K++VSW+ ++  +           + 
Sbjct: 677  RLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVL 736

Query: 283  MNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
              M+     V  DEV +++ +  C + + + +   +H  ++K        + NA +  Y+
Sbjct: 737  RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYA 796

Query: 341  SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
             CG ++ A+++F    +  + SWN+                               +I G
Sbjct: 797  KCGSLSYAQRVFHGIRSKTVNSWNA-------------------------------LIGG 825

Query: 401  YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
            +AQ +    +L   ++M+  G+ PD  T+ S++SAC+ L +L  GK +H +I +N L+ +
Sbjct: 826  HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 885

Query: 461  SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
              +  +++ +Y+  G +     +F   E+K + SWN +I G+  NG  D++L +F +M  
Sbjct: 886  LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 945

Query: 521  SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
             G+    I+ + V GAC  +  +  G R  ++   +H LE ++     ++D+  + G + 
Sbjct: 946  YGIQLCGISMMPVFGACSLLPSLRLG-REAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 1004

Query: 581  EAEELIESMPMSPDVATWGALLGACKKHG 609
            ++ ++   +      A+W A++     HG
Sbjct: 1005 QSSKVFNGLK-EKSTASWNAMIMGYGIHG 1032



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 182/409 (44%), Gaps = 36/409 (8%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMV 292
           +I ++   G+  ++  +F  +  K+L  W+A+IS Y +NE+Y+E L  F+ MI    ++ 
Sbjct: 481 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 540

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      V+ ACA ++ V  G +VH L VK G+   + + NAL+  Y + G +T A +LF
Sbjct: 541 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 600

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     +L+SWNSMI  +   G  E++  L   M+E                        
Sbjct: 601 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME------------------------ 636

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
              E       PD ATLV+V+  C     +  GK +H +  K  L    +L   L+DMY 
Sbjct: 637 ---ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYS 693

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG--VTPNEITF 530
           K GC+ NA  +F     K V SWN ++ GF+  G    + ++  +M   G  V  +E+T 
Sbjct: 694 KCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI 753

Query: 531 VGVLGACRHMGLVDE-GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           +  +  C H   +      H  S+ QE     N       V    + G L  A+ +   +
Sbjct: 754 LNAVPVCFHESFLPSLKELHCYSLKQEFVY--NELVANAFVASYAKCGSLSYAQRVFHGI 811

Query: 590 PMSPDVATWGALLGACKKHGDHEMG--ERVGRKLVELQPDHDGFHVLLS 636
             S  V +W AL+G   +  D  +     +  K+  L PD      LLS
Sbjct: 812 -RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 859



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 174/394 (44%), Gaps = 60/394 (15%)

Query: 18   VNAKPI-FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLL 76
            +NA P+ F  +   S+ E H   C S KQ      + +   L+A+ F AS     S    
Sbjct: 754  LNAVPVCFHESFLPSLKELH---CYSLKQ------EFVYNELVANAFVASYAKCGS---- 800

Query: 77   PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
                +SY+ ++F  + S     +N ++  + Q N P+ ++  +  M  + +  D++T   
Sbjct: 801  ----LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 856

Query: 137  LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
            L  A +   S+  GK +H  +++   + D++V  +++++Y  CG+L   + LFD      
Sbjct: 857  LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 916

Query: 197  LVSWNSILAGYVNADNVEEAKFIYNK-------------MP------------------- 224
            LVSWN+++ GY+     + A  ++ +             MP                   
Sbjct: 917  LVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHA 976

Query: 225  -------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                   E +   + S+I ++ + G++ ++ ++F  + +K   SW+A+I  Y  + + +E
Sbjct: 977  YALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKE 1036

Query: 278  ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALI 336
            A+ LF  M       D++  + VL+AC +  ++  G   +  +    G++  +     +I
Sbjct: 1037 AIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVI 1096

Query: 337  HMYSSCGEITTAEKLF--DAGHNLDLISWNSMIS 368
             M    G++  A ++   +     D+  W S++S
Sbjct: 1097 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 1130


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/480 (43%), Positives = 309/480 (64%), Gaps = 6/480 (1%)

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DL 360
           SAC+ L     G+ VHALAVK G    + ++NAL+H Y   G++    ++FD    + D+
Sbjct: 159 SACSFL-----GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN +++GY++ G +  AR +FD M  +D +SWST++ GY + ++    L +F  M   
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+RP++A +V+ +SA   L  L+ GK++H  ++++G+ +   +G  L+DMY K GCV  A
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            EVF G   + V +WNA+I G A +GL   ++E+F      G++P  +TFVGVL  C   
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV EG R+F  +++++R+EP  +HYGCMVDLLGRAG++ EA ELIE M ++PD   WG 
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           +L +CK HG  ++G  VG KL+EL P H G++VLLS I+A   +WD+V EVR +M  RG 
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K  G S++EA+G +H+FL GD  H    +I + LD + K+L   GY PD   V  DI +
Sbjct: 514 NKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGE 573

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK   +  HSE+LAIA+G I +   +PIRI+KNLR+C DCH  +K ++  F REI+VRD
Sbjct: 574 EEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/582 (23%), Positives = 235/582 (40%), Gaps = 131/582 (22%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP-------------F 78
           +L   L    + +Q  Q  +++ + GL A + A   L+     LLP              
Sbjct: 34  LLAALLPPSPTVRQVQQAHARLAVLGLAA-SRAMPHLLAVLPRLLPDKPRHRGDDGGGDG 92

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--------VGVD 130
              +Y   +F    S + F  N ++R  +   +P   + L+      N          + 
Sbjct: 93  DHYAYPLALFRRANSTSAFASNNLLRV-LPHPLP---LTLFSRFRRRNPHSFTFLLASIS 148

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           N+       ASA     F G  +H   +KAG   D++V N L++ Y V GD+ A R++FD
Sbjct: 149 NHLNAAGPSASACS---FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFD 205

Query: 191 ESP-VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           E P V D+++WN +LAGYV                               R G +  A  
Sbjct: 206 ELPRVRDVLTWNEVLAGYV-------------------------------RAGMMTVARE 234

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F EMP +D +SWS L+  Y + E  E AL +F NM++  V  ++  VV+ LSA A L +
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  VH +  + G+   +N+  AL+ MY+ CG +  A ++FD     D+ +WN+M   
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAM--- 351

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                       I G A H    + + LF      G+ P   T 
Sbjct: 352 ----------------------------ICGLAAHGLGRDAVELFERFISEGLSPTNVTF 383

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           V V++ C+    + +G ++    + K  ++        ++D+  + G V  A+E+  G  
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMH 443

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
                                             + P+ + +  +L +C+  GLVD G  
Sbjct: 444 ----------------------------------IAPDPVLWGTILSSCKTHGLVDLGVS 469

Query: 549 HFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
             N +I+   L+P +S +Y  +  +  +A    E  E+ + M
Sbjct: 470 VGNKLIE---LDPTHSGYYVLLSGIYAKANKWDEVREVRKLM 508


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/749 (34%), Positives = 411/749 (54%), Gaps = 54/749 (7%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N + ++ M+ AY +  + ++ +  +  M+ + +  D +  P + QA     
Sbjct: 140 KVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCG 199

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               GKLIH  V++ G + ++ V+N+++ +YA CG LS AR+ F+     D VSWNSI+ 
Sbjct: 200 DAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIIT 259

Query: 206 GYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPK----K 257
           GY     +E++  ++ KM E  I    +  N +I  + + G   +A  L K+M       
Sbjct: 260 GYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVP 319

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           D+ +W+++IS + QN    +AL LF  M+   +  + V V S +SACA+L  +K G  +H
Sbjct: 320 DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELH 379

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           ++AVKIG    + + N+LI MYS  GE+  A ++FD     D+ +WNSMI GY + G   
Sbjct: 380 SVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCG 439

Query: 378 KARALF----------------------------------------DAMIEKDVVSWSTM 397
           KA  LF                                        D +I++D  SW+++
Sbjct: 440 KAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSL 499

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I+GY Q+   ++ L +F +MQ   IRP+  T++S++ AC +LVA  + K IH  I +  L
Sbjct: 500 IAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNL 559

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
                +   LID Y K G +  A  +F G   K + SWN+LI G+ ++G +D +L++F +
Sbjct: 560 GSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQ 619

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M K GV P+  TF+ ++ A    G+VD+G + F+SM++++++ P  +H+  M+DLLGR+G
Sbjct: 620 MTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSG 679

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L EA E IE M + PD   W ALL A K HG+  +  R G  L+EL+P +   H  +  
Sbjct: 680 KLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQ 739

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++A  G+++DV ++R    R    +  GCS IEA  I+H F+A DR+ P  + + + ++ 
Sbjct: 740 MYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIEN 799

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS-PPNPIRIMKNLR 756
           +A+K+K    APD  +  F I++EEKE     HSEKLA+AF LI  S  P  +RI+KNLR
Sbjct: 800 VARKVK----APDQHDRLF-IEEEEKEEIGGVHSEKLALAFALIDPSCAPRSVRIVKNLR 854

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFH 785
           +C DCH  AKF+S  +  EI + D    H
Sbjct: 855 MCGDCHGTAKFLSMLYSCEIYLSDSKCLH 883



 Score =  208 bits (530), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 223/430 (51%), Gaps = 52/430 (12%)

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           + E N      ++ ++ + G++ EA ++F EM +++L +WSA+I  Y + +M+ E +  F
Sbjct: 114 LEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHF 173

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M++  ++ DE ++  +L AC N    + G  +H+L ++ G+   I + N+++ +Y+ C
Sbjct: 174 FFMMEDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKC 233

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK------------- 389
           G ++ A + F+     D +SWNS+I+GY + G +EK+  LF+ M E+             
Sbjct: 234 GRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILI 293

Query: 390 --------------------------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
                                     DV +W++MISG+AQ+++ S+ L LF EM   GI 
Sbjct: 294 NSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIE 353

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+  T+ S ISAC  L AL +G  +H+   K G   + ++G +LIDMY K G +++A  V
Sbjct: 354 PNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRV 413

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F    +K V +WN++I G+   G   K+ ++F +M +S V PN +T+  ++      G  
Sbjct: 414 FDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDE 473

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE--------LIESMPMSPDV 595
           D+    F+ M ++  ++ ++  +  ++     AG L+   +         ++S  + P+ 
Sbjct: 474 DQAMDLFHRMEKDGLIKRDTASWNSLI-----AGYLQNGHKNKALGIFRQMQSFCIRPNS 528

Query: 596 ATWGALLGAC 605
            T  ++L AC
Sbjct: 529 VTMLSILPAC 538


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/701 (36%), Positives = 370/701 (52%), Gaps = 75/701 (10%)

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           P  A ++ALR        +H   + +GF +D +V + L  +Y      + ARK+FD  P 
Sbjct: 134 PPSAASAALRP-------LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPS 186

Query: 195 LDLVSWNSILAGYVNADNVE-------------EAKFIYNKMPERNIIASNSM------- 234
            D V WN++LAG   ++ +E             ++  + + +P    +A+ +M       
Sbjct: 187 PDTVLWNTLLAGLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAF 246

Query: 235 ----------------IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                           I L+ + G++  A  LF  M   DLV+++ALIS Y  N M   +
Sbjct: 247 GEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSS 306

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
           + LF  ++   +      +V+++   +          +HA  VK G++    +  AL  +
Sbjct: 307 VELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTL 366

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y                       +N M          + AR  FDAM EK + SW+ MI
Sbjct: 367 Y---------------------CRFNDM----------DSARRAFDAMPEKTMESWNAMI 395

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           SGYAQ+      ++LF +MQ   +RP+  T+ S +SAC  L AL  GKW+H  I    L+
Sbjct: 396 SGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLE 455

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           +N  + T LIDMY+K G +  A  +F   + K V SWN +I G+ ++G   ++L+++ +M
Sbjct: 456 LNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDM 515

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
             + + P   TF+ VL AC H GLV EG   F SM  ++ + P  +H  CMVDLLGRAG 
Sbjct: 516 MDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQ 575

Query: 579 LKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
           LKEA ELI   P S      WGALLGAC  H D ++ +   +KL EL+P++ G++VLLSN
Sbjct: 576 LKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSN 635

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++ SK ++ +   VR     R +VK PGC++IE     H F+AGDR HPQ + I   L++
Sbjct: 636 LYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEK 695

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           +  K+   GY PDT    +D+++EEKE  +  HSEKLAIAFGL+   P   IRI+KNLR+
Sbjct: 696 LTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRV 755

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH A K IS+   R IVVRD  RFHHF+ G CSC D+W
Sbjct: 756 CLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 210/488 (43%), Gaps = 79/488 (16%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + +G  AD F AS L K    L      + + K+F  + SP+  ++NT++         +
Sbjct: 150 VASGFAADNFVASALAKLYFTL---SRGNDARKVFDAVPSPDTVLWNTLLAGLSGSEALE 206

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
             +   ++    +V  D+ T   +  A+A   +   G+ +H    K G     +V   LI
Sbjct: 207 AFV---RMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLI 263

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-VN---ADNVEEAKFI---------- 219
           ++YA CGD+  AR LFD     DLV++N++++GY +N     +VE  K +          
Sbjct: 264 SLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSS 323

Query: 220 -----------YNKMP--------------ERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                      +   P              + N   S ++  L+ R  ++  A R F  M
Sbjct: 324 TLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAM 383

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P+K + SW+A+IS Y QN + E A+ LF  M    V  + + + S LSACA L  +  G 
Sbjct: 384 PEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGK 443

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            VH +     +E  + +  ALI MY  CG I  A  +FD+  N +++SWN MIS      
Sbjct: 444 WVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMIS------ 497

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                    GY  H Q +E L L+ +M    + P  +T +SV+ 
Sbjct: 498 -------------------------GYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLY 532

Query: 435 ACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           AC+H   + +G  +   +  + G+       T ++D+  + G +  A E+     +  V 
Sbjct: 533 ACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVG 592

Query: 494 S--WNALI 499
              W AL+
Sbjct: 593 PGIWGALL 600


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 350/582 (60%), Gaps = 36/582 (6%)

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
             Y+     N++A+ ++     R G++  AC +F+++ +     ++ +I     +   EE
Sbjct: 58  LFYDSFCGSNLVATCAL----SRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEE 113

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL+L++ M++  +  D      VL AC+ L  +K G  +HA   K G+E  + +QN LI+
Sbjct: 114 ALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLIN 173

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           M                               Y KCG++E A  +F+ M EK V SWS++
Sbjct: 174 M-------------------------------YGKCGAIEHASVVFEQMDEKSVASWSSI 202

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I  +A  + + E L L  +M   G  R +E+ LVS +SACTHL + + G+ IH  + +N 
Sbjct: 203 IGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNI 262

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            ++N  + T+LIDMY+K G ++  L VF    +K   S+  +I G A++G   ++L +FS
Sbjct: 263 SELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFS 322

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M + G+ P+++ +VGVL AC H GLV+EG + FN +  EH+++P  +HYGCMVDL+GRA
Sbjct: 323 DMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRA 382

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           GMLK A +LI+SMP+ P+   W +LL ACK H + E+GE     + +L   + G +++L+
Sbjct: 383 GMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLA 442

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A   +W DV  +R  M  + +V+ PG S++EAN  +++F++ D++ PQ   I +M+ 
Sbjct: 443 NMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQ 502

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           +M  +LK EGY PD  +V  D+D++EK   L  HS+KLAIAF LI  S  + IRI +N+R
Sbjct: 503 QMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIR 562

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +CNDCHT  KFIS  ++REI VRDR+RFHHFK G+CSC D+W
Sbjct: 563 MCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 162/336 (48%), Gaps = 52/336 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++C+S ++F Q+ + ++  GL  D+F  S L+  +  L  +  M Y+  IF  +E P  
Sbjct: 37  LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVA-TCALSRWGSMEYACSIFRQIEEPGS 95

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F +NTM+R  +     ++A+ LY  ML   +  DN+TYP + +A +L  ++ EG  IH H
Sbjct: 96  FEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAH 155

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V KAG + DV+V N LINMY  CG +  A  +F++     + SW+SI+  + + +   E 
Sbjct: 156 VFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHEC 215

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
             +   M                                         E N+    S+I 
Sbjct: 216 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLID 275

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G++ +   +F+ M +K+  S++ +I+    +    EAL +F +M++  +  D+VV
Sbjct: 276 MYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVV 335

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            V VLSAC+           HA  V  G++C+  LQ
Sbjct: 336 YVGVLSACS-----------HAGLVNEGLQCFNRLQ 360


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/533 (41%), Positives = 325/533 (60%), Gaps = 37/533 (6%)

Query: 272 NEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANL-TVVKA---GTSVHALAVKIGIE 326
           +++ +  +VLF  M   +  + D + +++    C  L + VKA   G  +H  AVK+G+ 
Sbjct: 85  DQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVS 144

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + +   LI+MY++C                               G ++ +R +FD +
Sbjct: 145 DNMYVVPTLINMYTAC-------------------------------GDIDASRRVFDKI 173

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            E  VV+++ +I   A++++ +E L+LF E+Q  G++P + T++ V+S+C  L +LD G+
Sbjct: 174 DEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGR 233

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
           W+H Y++K G      + TTLIDMY K G +D+A+ VF    ++   +W+A+I+ +A +G
Sbjct: 234 WMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHG 293

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              +++ M +EMKK  V P+EITF+G+L AC H GLV+EG  +F+ M  E+ + P+ KHY
Sbjct: 294 DGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHY 353

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
           GCMVDLLGRAG L EA + I+ +P+ P    W  LL AC  HG+ EMG+RV  ++ EL  
Sbjct: 354 GCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDD 413

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            H G +V+ SN+ A  G+WDDV  +R  M+ +G VKIPGCS IE N ++HEF AG+  H 
Sbjct: 414 SHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHS 473

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISP 745
               +   LDE+ K+LK  GY PDT  V + D++ EEKE  L  HSEKLAI FGL+   P
Sbjct: 474 TSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPP 533

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              IR++KNLR+C DCH AAKFIS  F R+I++RD  RFHHFK G CSC D+W
Sbjct: 534 GTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 184/416 (44%), Gaps = 62/416 (14%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           + KC + K+  QI +  I T    +T   ++ I F T       M ++ ++F  +  PN 
Sbjct: 33  IPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNI 92

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
            +FNTM R Y + N P + I  ++  L            L+++  AL     EGK +H  
Sbjct: 93  VLFNTMARGYARLNDPLRMITHFRRCLR-----------LVSKVKALA----EGKQLHCF 137

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K G   ++YV  TLINMY  CGD+ A+R++FD+     +V++N+I+      +   EA
Sbjct: 138 AVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEA 197

Query: 217 KFIYNKMPE---------------------------------------RNIIASNSMIVL 237
             ++ ++ E                                       R +  + ++I +
Sbjct: 198 LALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDM 257

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++ +A  +F++MPK+D  +WSA+I  Y  +    +A+ +   M   +V  DE+  
Sbjct: 258 YAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITF 317

Query: 298 VSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-G 355
           + +L AC++  +V+ G    H +  + GI   I     ++ +    G +  A K  D   
Sbjct: 318 LGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELP 377

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWSTMISGYAQHD 405
                I W +++S     G+VE  + + + + E       D V +S + + Y + D
Sbjct: 378 IKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWD 433



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 25/241 (10%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
            S+E A  LFD + + ++V ++TM  GYA+ +                   D   +++  
Sbjct: 75  ASMEHAHQLFDQITQPNIVLFNTMARGYARLN-------------------DPLRMITHF 115

Query: 434 SACTHLV----ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
             C  LV    AL +GK +H +  K G+  N  +  TLI+MY   G +D +  VF   +E
Sbjct: 116 RRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDE 175

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
             V ++NA+I+  A N  A+++L +F E+++ G+ P ++T + VL +C  +G +D G R 
Sbjct: 176 PCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG-RW 234

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +  ++++  +   K    ++D+  + G L +A  +   MP   D   W A++ A   HG
Sbjct: 235 MHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKR-DTQAWSAIIVAYATHG 293

Query: 610 D 610
           D
Sbjct: 294 D 294



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 185/476 (38%), Gaps = 109/476 (22%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYA---VCGDLSAARKLFDESPVLDLVSWNSILA 205
           E K I  + +K  + ++  V    IN          +  A +LFD+    ++V +N++  
Sbjct: 41  ELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMAR 100

Query: 206 GYVNADN--------------------VEEAK----FIYNKMPERNIIASNSMIVLFGRK 241
           GY   ++                    + E K    F        N+    ++I ++   
Sbjct: 101 GYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTAC 160

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  + R+F ++ +  +V+++A+I    +N    EAL LF  + +  +   +V ++ VL
Sbjct: 161 GDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVL 220

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           S+CA L  +  G  +H    K G + Y+ +   LI MY+ CG +  A  +F         
Sbjct: 221 SSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF--------- 271

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                                   M ++D  +WS +I  YA H    + +S+  EM+   
Sbjct: 272 ----------------------RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEK 309

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           ++PDE T + ++ AC+H                NGL                   V+   
Sbjct: 310 VQPDEITFLGILYACSH----------------NGL-------------------VEEGF 334

Query: 482 EVFHG-TEEKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           E FHG T E G    +  +  ++      G  D++ +   E+    + P  I +  +L A
Sbjct: 335 EYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELP---IKPTPILWRTLLSA 391

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV---DLLGRAGMLKEAEELIESM 589
           C   G V+ G R     + E   E +  H G  V   +L  R G   +   L ++M
Sbjct: 392 CSTHGNVEMGKR-----VIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTM 442


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/817 (31%), Positives = 426/817 (52%), Gaps = 78/817 (9%)

Query: 26  PTINLSILETHLQKCQS---FKQFTQILSQMILTGLIA--DTFAASRLIKFSTDLLPFIE 80
           P ++       LQ+C +    +    + ++++  G +A  DTF A+ L+ F   L P   
Sbjct: 41  PKLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGP--- 97

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           ++ + ++F  +   N   F T+M+ Y  R   ++A+ L++ +      V+++    + + 
Sbjct: 98  LATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKV 157

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +      IH    K G D + +V   LI+ Y++CG +  AR +FD     D V+W
Sbjct: 158 LVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTW 217

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PERNIIAS----------------------- 231
            ++++ Y   D  E A   ++KM      P   ++ S                       
Sbjct: 218 TAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVK 277

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                      +++ ++ + G++ +A  +F+ +P  D++ WS LIS Y Q+   E+A  +
Sbjct: 278 TLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEM 337

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F+ M+   V+ +E  +  VL ACAN+  ++ G  +H LA+K+G E  + + NAL+ MY+ 
Sbjct: 338 FLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYA- 396

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
                                         KC ++E +  +F ++ + + VSW+T+I GY
Sbjct: 397 ------------------------------KCRNMENSLEIFSSLQDANEVSWNTIIVGY 426

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
            Q     + LS+F EM+   +   + T  SV+ AC +  ++     IH+ I K+    ++
Sbjct: 427 CQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDT 486

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           I+  +LID Y K G + +AL+VF    E  V SWN++I  +A++G A  +LE+F  M KS
Sbjct: 487 IVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKS 546

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            +  N++TFV +L  C   GLV++G   FNSM+ +HR++P+ +HY C+V LLGRAG L +
Sbjct: 547 DIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTD 606

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A + I  +P +P    W ALL +C  H +  +G     K+++++P  +  +VLLSN++A+
Sbjct: 607 ALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAA 666

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
            G  D+V   R  M   GV K  G S +E  G +H F  G   HP +  I+ ML+ +  K
Sbjct: 667 AGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLK 726

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
              EGY PD   V  D+D+EEK   L+ HSE+LA+A+GL    P +PIRIMKNLR C DC
Sbjct: 727 ASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDC 786

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           HT  K IS+   REI+VRD +RFHHF+ G CSC D+W
Sbjct: 787 HTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 361/614 (58%), Gaps = 37/614 (6%)

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAE 246
           + P +    +N +L   VN   V E + ++  M +      +  S  +I+L+ +   +  
Sbjct: 4   QGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGC 63

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A  +F EM ++++VSW+A+IS Y Q     EAL LF+ M+      +E    +VLS+C  
Sbjct: 64  ARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTG 123

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
            +  + G  +H+   K   E +I + ++L+ MY+                          
Sbjct: 124 FSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYA-------------------------- 157

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                K G + +AR +F+ + E+DVVS + +ISGYAQ     E L LF  +Q  G+  + 
Sbjct: 158 -----KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNY 212

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T  S+++A + L ALD GK +H+++ +  L    +L  +LIDMY K G ++ A ++F+ 
Sbjct: 213 VTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNN 272

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDE 545
              + V SWNA+++G++ +G   + +++F  M++   V P+ +TF+ VL  C H GL D+
Sbjct: 273 MPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDK 332

Query: 546 GHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           G   F+ M+     +E   +HYGC++DLLGRAG ++EA ELI+ MP  P  A WG+LLGA
Sbjct: 333 GLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGA 392

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+ H +  +GE VG +L+E++P++ G +V+LSN++AS GRW+DV  VR +M+ + V+K P
Sbjct: 393 CRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEP 452

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S IE +  IH F A DR+HP+  E+   + E+  K K  GY PD   V +D+D+E+KE
Sbjct: 453 GRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKE 512

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L  HSEKLA+AFGLI+ S   P+R++KNLRIC DCH  AKF+S+ + R++ +RD++RF
Sbjct: 513 KILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRF 572

Query: 785 HHFKHGSCSCMDFW 798
           HH   G CSC D+W
Sbjct: 573 HHVAGGICSCGDYW 586



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 49/279 (17%)

Query: 35  THLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T L  C  F  F    QI S +         F  S L+          E   +  +F  L
Sbjct: 116 TVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHE---ARGVFECL 172

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              +      ++  Y Q  + ++A+ L+  +    +  +  TY  L  A +   ++  GK
Sbjct: 173 PERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGK 232

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H HVL+      V + N+LI+MY+ CG+L+ ARK+F+  PV  ++SWN++L GY    
Sbjct: 233 QVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHG 292

Query: 212 NVEEAKFIYNKMPERNIIASNS-------------------------------------- 233
              E   ++  M E N +  +S                                      
Sbjct: 293 KGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIE 352

Query: 234 ----MIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
               +I L GR G V EA  L K+MP +   + W +L+ 
Sbjct: 353 HYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLG 391


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 345/606 (56%), Gaps = 8/606 (1%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----K 256
           +S+L  Y+       A+ ++++MPE+N++  +++I  +  +G+   A  L ++M     +
Sbjct: 56  SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVE 115

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
            ++++W+ L+S   ++    +A+   + M       D   V   LSA  ++  V  G  V
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H   VK G      +  ALI MY  CG      ++F    ++D+ S N++++G  +   V
Sbjct: 176 HGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQV 235

Query: 377 EKARALFDAMI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            +A  LF   I    E +VVSW+++++   Q+ +  E + LF  MQ  G+ P+  T+  V
Sbjct: 236 SEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCV 295

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + A  ++ AL  G+  H +  + G   +  +G+ L+DMY K G   +A  +F     + V
Sbjct: 296 LPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNV 355

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SWNA+I G+AM+G A  ++++F  M+K    P+ +TF  VLGAC   GL +EG R+FN 
Sbjct: 356 VSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNE 415

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M Q H + P  +HY CMV LLGR+G L EA +LI  MP  PD   WG+LLG+C+ +G+  
Sbjct: 416 MQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVL 475

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           + E    KL +L+P + G +VLLSNI+ASK  WD V  VR  M   G+ K  GCS IE  
Sbjct: 476 LAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIK 535

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H  LAGD +HP +  I   L+++  ++   G+AP    V  D++++EK+  L  HSE
Sbjct: 536 NKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSE 595

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLA+A GLI+  P  P+R++KNLRIC DCH A KFIS    REI VRD +RFHHFK G C
Sbjct: 596 KLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKC 655

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 656 SCGDYW 661



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 188/445 (42%), Gaps = 80/445 (17%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY 83
           F P  +L  L + L+ C +      + +  +++GL  D F AS L+      +       
Sbjct: 16  FPPDPHL--LPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLH---SYIRLGATGA 70

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV------------GVDN 131
           +  +F  +   N   ++ ++  Y  R   + A  L + M +  V            G++ 
Sbjct: 71  ARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNR 130

Query: 132 YTYPLLAQASALRL-----------------------SVFEGKLIHDHVLKAGFDSDVYV 168
               L A  + +R+                        V  GK +H +V+KAG   D  V
Sbjct: 131 SGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACV 190

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
              LI+MY  CG      ++F ES  +D+ S N+++AG                      
Sbjct: 191 VTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAG---------------------- 228

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISCYEQNEMYEEALVLFMN 284
                      R   V+EA  LF+E   +    ++VSW+++++C  QN    EA+ LF  
Sbjct: 229 ---------LSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRT 279

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    V  + V +  VL A AN+  +  G S H  +++ G    + + +AL+ MY+ CG+
Sbjct: 280 MQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGK 339

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISG 400
              A  +FDA  + +++SWN+MI GY   G    A  LF +M     + D+V+++ ++  
Sbjct: 340 ARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGA 399

Query: 401 YAQHDQFSETLSLFMEMQH-HGIRP 424
            +Q     E    F EMQ  HGI P
Sbjct: 400 CSQAGLTEEGRRYFNEMQQGHGISP 424



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 42/212 (19%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++   +Q     +A+ L++ M +  V  ++ T P +  A A   ++  G+  H   L
Sbjct: 257 WTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSL 316

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV---------- 208
           + GF  DVYV + L++MYA CG    AR +FD  P  ++VSWN+++ GY           
Sbjct: 317 RKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQ 376

Query: 209 -------------------------NADNVEEAKFIYNKMPERNIIASN-----SMIVLF 238
                                     A   EE +  +N+M + + I+        M+ L 
Sbjct: 377 LFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL 436

Query: 239 GRKGNVAEACRLFKEMP-KKDLVSWSALI-SC 268
           GR G + EA  L  EMP + D   W +L+ SC
Sbjct: 437 GRSGKLDEAYDLINEMPFEPDSCIWGSLLGSC 468



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           S + SL+  ++H    PD   L S + +C    A    + +HA    +GL  +  + ++L
Sbjct: 2   SHSNSLYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSL 58

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +  Y++LG    A  VF    EK V  W+ALI G++  G A+ +  +  +M+ +GV PN 
Sbjct: 59  LHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNV 118

Query: 528 ITFVGVLGACRHMG 541
           IT+ G++      G
Sbjct: 119 ITWNGLVSGLNRSG 132


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/435 (47%), Positives = 288/435 (66%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           NS+IS Y + G +E AR  FD + EK++VS++ ++ GYA++ +  E   LF E+   GI 
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 122

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
               T  S++S    + A+ +G+ IH  + K G K N  +   LI MY + G ++ A +V
Sbjct: 123 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 182

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F+  E++ V SW ++I GFA +G A ++LEMF +M ++G  PNEIT+V VL AC H+G++
Sbjct: 183 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 242

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            EG +HFNSM +EH + P  +HY CMVDLLGR+G+L EA E I SMP+  D   W  LLG
Sbjct: 243 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 302

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC+ HG+ E+G      ++E +PD    ++LLSN+HAS G+W DV+++R  M  R ++K 
Sbjct: 303 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE 362

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
            GCS IE    +H F  G+ +HPQ  +I   LD++A K+K  GY PDT  V  DI++E+K
Sbjct: 363 AGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQK 422

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  LF+HSEK+A+AFGLI+ S   PIRI KNLR+C DCHTA K+IS A  REIVVRD +R
Sbjct: 423 EQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNR 482

Query: 784 FHHFKHGSCSCMDFW 798
           FHH K+G CSC D+W
Sbjct: 483 FHHIKNGVCSCNDYW 497



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 198/421 (47%), Gaps = 73/421 (17%)

Query: 175 MYAVC---GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE-EAKFIYNKMPERNI-I 229
           MYA C   G +  +RK+F++ P  +++SW +I+  YV +   + EA  ++ KM   ++  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             NS+I ++ R G + +A + F  + +K+LVS++A++  Y +N   EEA +LF  + D  
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           + +      S+LS  A++  +  G  +H   +K G +    + NALI MYS CG I  A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++F+   + ++ISW SMI+G+ K G   +A  +F  M+E                     
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET-------------------- 220

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
                      G +P+E T V+V+SAC+H+  + +G+             NS        
Sbjct: 221 -----------GTKPNEITYVAVLSACSHVGMISEGQ----------KHFNS-------- 251

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY + G V              +  +  ++     +GL  +++E  + M    +  + + 
Sbjct: 252 MYKEHGIVPR------------MEHYACMVDLLGRSGLLVEAMEFINSMP---LMADALV 296

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEELIES 588
           +  +LGACR  G  + G RH   MI E   EP+    Y  + +L   AG  K+  ++ +S
Sbjct: 297 WRTLLGACRVHGNTELG-RHAAEMILEQ--EPDDPAAYILLSNLHASAGQWKDVVKIRKS 353

Query: 589 M 589
           M
Sbjct: 354 M 354



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 124/264 (46%), Gaps = 41/264 (15%)

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V N+LI+MYA  G +  ARK FD     +LVS+N+I+ GY      EEA  ++N++ +  
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 228 IIAS---------------------------------------NSMIVLFGRKGNVAEAC 248
           I  S                                       N++I ++ R GN+  A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++F EM  ++++SW+++I+ + ++     AL +F  M++     +E+  V+VLSAC+++ 
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 309 VVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSM 366
           ++  G    +++  + GI   +     ++ +    G +  A +  ++   + D + W ++
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 367 ISGYLKCGSVEKARALFDAMIEKD 390
           +      G+ E  R   + ++E++
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQE 324



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 115/233 (49%), Gaps = 12/233 (5%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + K F  L   N   +N ++  Y +    ++A  L+  + +  +G+  +T+  L   
Sbjct: 75  MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 134

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
           +A   ++ +G+ IH  +LK G+ S+  + N LI+MY+ CG++ AA ++F+E    +++SW
Sbjct: 135 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISW 194

Query: 201 NSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
            S++ G+        A  +++KM E     N I   +++      G ++E  + F  M K
Sbjct: 195 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 254

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           +      +  ++ ++    ++ +  EA+    +M    +M D +V  ++L AC
Sbjct: 255 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTLLGAC 304



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 52/248 (20%)

Query: 370 YLKC---GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF-SETLSLFMEMQHHGIRPD 425
           Y KC   GSV+ +R +F+ M E +V+SW+ +I+ Y Q  +   E + LF +M        
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-------- 53

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
                  ISA  + V                       G +LI MY + G +++A + F 
Sbjct: 54  -------ISASVNCV-----------------------GNSLISMYARSGRMEDARKAFD 83

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
              EK + S+NA++ G+A N  ++++  +F+E+  +G+  +  TF  +L     +G + +
Sbjct: 84  ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 143

Query: 546 GHRHFNSMIQEHRLEPNSKHYGC----MVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           G +     I    L+   K   C    ++ +  R G ++ A ++   M    +V +W ++
Sbjct: 144 GEQ-----IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSM 197

Query: 602 LGACKKHG 609
           +    KHG
Sbjct: 198 ITGFAKHG 205


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/701 (37%), Positives = 380/701 (54%), Gaps = 64/701 (9%)

Query: 150 GKLIHDHVLKAGF---DSDVYVNNTLINMYAVCGDLSAARKLFDESP--VLDLVSWNSIL 204
           G+  H   LK GF     + +  N L++MYA  G +  A++LF  S   V DLV+WN+++
Sbjct: 173 GREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 205 AGYVNADNVEEA-KFIYN---------------KMP-------------------ERNII 229
           +  V     EEA + +Y+                +P                   + + +
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDL 292

Query: 230 ASNSMIV-----LFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNE-MYEEALVL 281
           A+NS +      ++     V+ A R+F  +P+  + L  W+A+I  Y Q+  M EEA+ L
Sbjct: 293 AANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIEL 352

Query: 282 FMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F  M  +      E  +  VL ACA   V     +VH   VK  +     +QNAL+ MY+
Sbjct: 353 FSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYA 412

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMIS 399
             G +  A  +F      D++SWN++I+G +  G + +A  L   M +     S  TM+ 
Sbjct: 413 RLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLE 472

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           G    D  S      M        P+  TL++++  C  L A  +GK IH Y  ++ L+ 
Sbjct: 473 G----DDTSVDGQRCM--------PNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALES 520

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           +  +G+ L+DMY K GC+  A  VF     + V +WN LI+ + M+GL D++L +F  M 
Sbjct: 521 DLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMV 580

Query: 520 KSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            +G  TPNE+TF+  L AC H GLVD G   F  M +++  EP    + C+VD+LGRAG 
Sbjct: 581 ANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGR 640

Query: 579 LKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
           L EA  +I SM P    V+ W  +LGAC+ H + ++G     +L EL+PD    +VLL N
Sbjct: 641 LDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCN 700

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           I+++ G W++  EVRGMM +RGV K PGCS IE +G IH F+AG+  HP+  ++   +D 
Sbjct: 701 IYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDA 760

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           + ++++ EGY PDT  V  D+D+ EK   L  HSEKLAIAFGL+   P   IR+ KNLR+
Sbjct: 761 LWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRV 820

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CNDCH AAKFISR   REIV+RD  RFHHF+ G+CSC D+W
Sbjct: 821 CNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 186/391 (47%), Gaps = 44/391 (11%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMI-D 287
           SN+++  + R G++  A  LF   P   +D VS+++LIS       +  AL    +M+ D
Sbjct: 88  SNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLAD 147

Query: 288 HRVMVDEVVVVSVLSACANLTVV--KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           H V      +VSVL AC++L     + G   HA A+K G                     
Sbjct: 148 HEV--SSFTLVSVLLACSHLADQGHRLGREAHAFALKHG--------------------- 184

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF--DAMIEKDVVSWSTMISGYAQ 403
                  D G   +   +N+++S Y + G V+ A+ LF        D+V+W+TMIS   Q
Sbjct: 185 -----FLDKGR--ERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQ 237

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK-NGLKINSI 462
             +  E + +  +M   G+RPD  T  S + AC+ L  L  G+ +HA++ K + L  NS 
Sbjct: 238 GGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSF 297

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKG--VSSWNALIIGFAMN-GLADKSLEMFSEMK 519
           + + L+DMY     V +A  VF    E G  +  WNA+I G+A + G+ ++++E+FS M+
Sbjct: 298 VASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRME 357

Query: 520 -KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
            ++G  P+E T  GVL AC     V  G    +  + +  +  N      ++D+  R G 
Sbjct: 358 AEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGR 416

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHG 609
           + EA  +   + +  D+ +W  L+  C   G
Sbjct: 417 MDEAHTIFAMIDLR-DIVSWNTLITGCIVQG 446



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 187/449 (41%), Gaps = 82/449 (18%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI--FNTMMRAYIQRN-VPQQ 114
           L A++F AS L+          ++S++ ++F  +      +  +N M+  Y Q   + ++
Sbjct: 292 LAANSFVASALVDMYAS---NEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEE 348

Query: 115 AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK-LIHDHVLKAGFDSDVYVNNTLI 173
           AI L+  M        + T       +  R  VF GK  +H +V+K    S+ +V N L+
Sbjct: 349 AIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALM 408

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS 233
           +MYA  G +  A  +F    + D+VSWN+++ G +                         
Sbjct: 409 DMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIV------------------------ 444

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
                  +G ++EA +L +EM          L S     E   E     ++    R M +
Sbjct: 445 -------QGLISEAFQLVREM---------QLPSSAASGETMLEGDDTSVD--GQRCMPN 486

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + ++++L  CA L     G  +H  AV+  +E  + + +AL+ MY+ CG +  A  +FD
Sbjct: 487 NITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFD 546

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                ++I+WN +I  Y   G  ++A ALFD M+     +                    
Sbjct: 547 RLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEAT-------------------- 586

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYM 472
                     P+E T ++ ++AC+H   +D+G +      R  G +    L   ++D+  
Sbjct: 587 ----------PNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLG 636

Query: 473 KLGCVDNALEVFH--GTEEKGVSSWNALI 499
           + G +D A  +       E  VS+W+ ++
Sbjct: 637 RAGRLDEAYGIISSMAPGEHQVSAWSTML 665


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/645 (36%), Positives = 357/645 (55%), Gaps = 77/645 (11%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           LL     L+LS  + + +H  V+K+GF ++V++ N LI+ YA CG L   R+LFD+ P  
Sbjct: 25  LLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQR 84

Query: 196 -------------------------------DLVSWNSILAGYVNADNVEEAKFIYNKMP 224
                                          D  +WNS+++G+   D  EEA + +  M 
Sbjct: 85  NVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH 144

Query: 225 ER---------------------------------------NIIASNSMIVLFGRKGNVA 245
           +                                        ++   ++++ ++ + GNV 
Sbjct: 145 KEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVN 204

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +A ++F EM  +++VSW++LI+CYEQN    EAL +F  M++  V  DEV + SV+SACA
Sbjct: 205 DAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACA 264

Query: 306 NLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           +L+ +K G  VHA  VK+  +   I L NA + MY+ C  I  A  +FD+    ++I+  
Sbjct: 265 SLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           SM+SGY    S + AR +F  M E++VVSW+ +I+GY Q+ +  E LSLF  ++   + P
Sbjct: 325 SMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS------ILGTTLIDMYMKLGCVD 478
              T  +++ AC  L  L  G   H ++ K+G K  S       +G +LIDMY+K GCV+
Sbjct: 385 THYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
               VF    E+   SWNA+IIGFA NG  +++LE+F EM  SG  P+ IT +GVL AC 
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACG 504

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H G V+EG  +F+SM ++  + P   HY CMVDLLGRAG L+EA+ +IE MP+ PD   W
Sbjct: 505 HAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIW 564

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           G+LL ACK H +  +G+ V  KL E++  + G +VLLSN++A  G+W D + VR +M + 
Sbjct: 565 GSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKE 624

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           GV K PGCS I+  G  H F+  D++HP+  +I ++LD +  +++
Sbjct: 625 GVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMR 669



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 222/514 (43%), Gaps = 104/514 (20%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC S +   Q+  +M    +       + L K     L F++ + S  +F  +   +   
Sbjct: 67  KCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTK-----LGFLDEADS--LFRSMPERDQCT 119

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+  + Q +  ++A+  + +M      ++ YT+     A +    +  G  IH  + 
Sbjct: 120 WNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIA 179

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K+   SDVY+ + L++MY+ CG+++ A+++FDE    ++VSWNS++  Y       EA  
Sbjct: 180 KSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALK 239

Query: 219 IYNKMPE---------------------------------------RN-IIASNSMIVLF 238
           ++  M E                                       RN II SN+ + ++
Sbjct: 240 VFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMY 299

Query: 239 GRKGNVAEACRLFKEMP-------------------------------KKDLVSWSALIS 267
            +   + EA  +F  MP                               ++++VSW+ALI+
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIA 359

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
            Y QN   EEAL LF  +    V        ++L ACA+L  +  G   H   +K G + 
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFK- 418

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
                                   F +G   D+   NS+I  Y+KCG VE+   +F  M+
Sbjct: 419 ------------------------FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK- 446
           E+D VSW+ MI G+AQ+   +E L LF EM   G +PD  T++ V+SAC H   +++G+ 
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRH 514

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           +  +  R  G+       T ++D+  + G ++ A
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 62/280 (22%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK----IFAFLESP 94
           KC   K+   I   M +  +IA+T            ++    M+ S K    +F  +   
Sbjct: 301 KCSRIKEARFIFDSMPIRNVIAET-----------SMVSGYAMAASTKAARLMFTKMAER 349

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +N ++  Y Q    ++A+ L+ L+   +V   +YT+  + +A A    +  G   H
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAH 409

Query: 155 DHVLKAGF------DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            HVLK GF      + D++V N+LI+MY  CG +     +F +    D VSWN+++ G+ 
Sbjct: 410 VHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFA 469

Query: 209 -----------------------------------NADNVEEAKFIYNKMPERNIIAS-- 231
                                              +A  VEE +  ++ M     +A   
Sbjct: 470 QNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLR 529

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                M+ L GR G + EA  + +EMP + D V W +L++
Sbjct: 530 DHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLA 569


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/688 (35%), Positives = 363/688 (52%), Gaps = 72/688 (10%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
            + +H   + AG+ +D +V + L  +Y        ARK+FD  P  D + WN++LAG   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 210 ADNVEEAKFIYNK---MPERNIIASN---------------------------------S 233
           ++ +E    + +     P+   +AS+                                  
Sbjct: 193 SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG 252

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ + G++  A  LF  M   DLV+++ALIS Y  N M E ++ LF  +       +
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPN 312

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              +V+V+   +          +HA  VK  ++                           
Sbjct: 313 SSTLVAVIPVYSPFGHELLARCLHAFVVKARLDA-------------------------- 346

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D +   ++ + Y +   +E AR++FDAM+EK + SW+ MISGYAQ+      ++L
Sbjct: 347 -----DALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVAL 401

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  MQ   ++P+  T+ S +SAC HL AL  GKW+H  I K  L++N  + T LIDMY K
Sbjct: 402 FQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAK 461

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +  A  +F   + K V SWNA+I G+ ++G   ++L+++ +M  + + P   TF+ V
Sbjct: 462 CGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSV 521

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS- 592
           + AC H GLVDEG + F  M  E+R+ P  +H  CMVDLLGRAG L EA ELI   P S 
Sbjct: 522 IYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSA 581

Query: 593 --PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
             P V  WGALLGAC  H + ++ +   +KL EL  ++ G++VLLSN++ SK  + +   
Sbjct: 582 IGPGV--WGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAV 639

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR     R +VK PGC++IE     H F+AGD  HPQ   I + L+ +  K+   GY P 
Sbjct: 640 VRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPV 699

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T    +D+++EEKE  +  HSEKLAIAFGL++  P   IRI+KNLR+C DCH A KFIS+
Sbjct: 700 TEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISK 759

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R IVVRD  RFHHF+ G CSC D+W
Sbjct: 760 VTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 220/492 (44%), Gaps = 87/492 (17%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSY---SFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +  G  ADTF AS L K       + ++S    + K+F  + SP+  ++NT++       
Sbjct: 141 VAAGYAADTFVASALAKL------YFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSE 194

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
             +  +   +++    V  D+ T     +A+A    +  G+ +H + +K G     +V  
Sbjct: 195 ALEAFV---RMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVT 251

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA-------------- 216
            L+++Y+ CGD+ +A+ LFD     DLV++N++++GY     VE +              
Sbjct: 252 GLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRP 311

Query: 217 -------------------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251
                                     F+     + + + S ++  L+ R  ++  A  +F
Sbjct: 312 NSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
             M +K + SW+A+IS Y QN + E A+ LF  M +  V  + + + S LSACA+L  + 
Sbjct: 372 DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALS 431

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VH +  K  +E  + +  ALI MY+ CG I  A  +FD   N +++SWN+MISG  
Sbjct: 432 LGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISG-- 489

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                        Y  H Q +E L L+ +M    I P  +T +S
Sbjct: 490 -----------------------------YGLHGQGAEALKLYKDMLDARILPTSSTFLS 520

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTEE 489
           VI AC+H   +D+G+ +   +  N  +I   +   T ++D+  + G ++ ALE+     +
Sbjct: 521 VIYACSHGGLVDEGQKVF-RVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQ 579

Query: 490 KGVSS--WNALI 499
             +    W AL+
Sbjct: 580 SAIGPGVWGALL 591



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 40/319 (12%)

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
           A  ++H L+V  G      + +AL  +Y        A K+FD   + D I WN++++G  
Sbjct: 132 AARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAG-- 189

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLV 430
                                     + G       SE L  F+ M   G +RPD  TL 
Sbjct: 190 --------------------------LPG-------SEALEAFVRMVDAGRVRPDSTTLA 216

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S + A      +  G+ +H Y  K GL  +  + T L+ +Y K G +D+A  +F   +  
Sbjct: 217 SSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNP 276

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            + ++NALI G+++NG+ + S+E+F E+  SG  PN  T V V+      G  +   R  
Sbjct: 277 DLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGH-ELLARCL 335

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           ++ + + RL+ ++     +  L  R   ++ A  + ++M +   + +W A++    ++G 
Sbjct: 336 HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAM-LEKTMESWNAMISGYAQNGL 394

Query: 611 HEMGERVGRKLVEL--QPD 627
            EM   + + + EL  QP+
Sbjct: 395 TEMAVALFQLMQELNVQPN 413


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/775 (33%), Positives = 400/775 (51%), Gaps = 72/775 (9%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PT  L+ L T   K     +  ++  +M    L       S L    + L+P +E     
Sbjct: 47  PTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAH--SRLVPDME----- 99

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTY-PLLAQASAL 143
           ++FA +   +   +N ++  +     P +++ LY+ +L   +V     T   ++  ASAL
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
                 G  +H  VL+ GF +  +V + L++MYA  G +  AR++F E     +V +N++
Sbjct: 160 SDRAL-GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           + G +    +E+A                        KG       LF+ M  +D ++W+
Sbjct: 219 ITGLLRCKMIEDA------------------------KG-------LFQLMVDRDSITWT 247

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +++   QN +  EAL +F  M    V +D+    S+L+AC  L  ++ G  +HA   + 
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
             E  + + +AL+ MYS                               KC S+  A A+F
Sbjct: 308 WYEDNVFVGSALVDMYS-------------------------------KCRSIRLAEAVF 336

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
             M  ++++SW+ MI GY Q+    E +  F EMQ  GI+PD+ TL SVIS+C +L +L+
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLE 396

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           +G   H     +GL     +   L+ +Y K G +++A  +F         SW AL+ G+A
Sbjct: 397 EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYA 456

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
             G A +++++F +M  +G+ P+ +TF+GVL AC   GLV++G  +F+SM ++H + P  
Sbjct: 457 QFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPID 516

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
            HY CM+DL  R+G  KEAEE I+ MP SPD   W  LL +C+  G+ E+G+     L+E
Sbjct: 517 DHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLE 576

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
             P +   +VLL ++HA+KG+W +V  +R  M  R V K PGCS I+    +H F A D+
Sbjct: 577 TDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 636

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP  + I   L+ +  K+  EGY PD   V  D+   +K   +  HSEKLAIAFGLI +
Sbjct: 637 SHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFV 696

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               PIRI+KNLR+C DCH A KFIS+   R+I+VRD  RFH F  G+CSC DFW
Sbjct: 697 PQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 240/453 (52%), Gaps = 7/453 (1%)

Query: 187 KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAE 246
           K F ++P   L+  N +L  Y  +  +  A+ ++++MP+ N+   N+++        V +
Sbjct: 40  KTFLQAPPTFLL--NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPD 97

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACA 305
             RLF  MP++D VS++ALI+ +        ++ L+  ++ +  V    + + +++   +
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L+    G SVH   +++G   Y  + + L+ MY+  G I  A ++F       ++ +N+
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +I+G L+C  +E A+ LF  M+++D ++W+TM++G  Q+    E L +F  M+  G+  D
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           + T  S+++AC  L AL++GK IHAYI +   + N  +G+ L+DMY K   +  A  VF 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + + SW A+I+G+  N  +++++  FSEM+  G+ P++ T   V+ +C ++  ++E
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G + F+ +     L         +V L G+ G +++A  L + M    D  +W AL+   
Sbjct: 398 GAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGY 455

Query: 606 KKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
            + G  +    +  K++   L+PD   F  +LS
Sbjct: 456 AQFGKAKETIDLFEKMLANGLKPDGVTFIGVLS 488


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 359/619 (57%), Gaps = 60/619 (9%)

Query: 208 VNADNVEEAKFIYNKMPER------------------------NIIASNSMIVLFGRKGN 243
           +N  ++E  + IYNK+ +R                        +++  NS++ ++ + G+
Sbjct: 82  INNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGS 141

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA---LVLFMNMIDHRVMVDEVVVVSV 300
           +  A ++F EM  KD+V+W+++I+ Y Q+     A   LVLF+ M+   +  +E  + S+
Sbjct: 142 LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSL 201

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           +  C  L     G  +H    K G +  + + ++L+ MY+                    
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYA-------------------- 241

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      +CG + ++R +FD +  K+ VSW+ +ISG+A+  +  E L LF++MQ  
Sbjct: 242 -----------RCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQRE 290

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G    E T  +++ + +   +L+QGKW+HA++ K+G K+   +G TL+ MY K G + +A
Sbjct: 291 GFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDA 350

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRH 539
            +VF    +  V S N+++IG+A +GL  +++E+F EM     + PN+ITF+ VL AC H
Sbjct: 351 KKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSH 410

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL+DEG  +F  +++++ LEP   HY  +VDL GRAG+L +A+  IE MP+ P+   WG
Sbjct: 411 AGLLDEGLYYFE-LMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWG 469

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGA K H + EMG    +K++EL P + G H LLSNI+AS G+W DV +VR  M   G
Sbjct: 470 ALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSG 529

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K P CS +E    +H F A D +HPQ N++  M + + +K+K  GY PDT  V   +D
Sbjct: 530 LKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVD 589

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           Q+EKE  L  HSEKLA+AF L+   P + IRIMKN+R+C DCH+A K++S    REI+VR
Sbjct: 590 QQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVR 649

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D +RFHHF+ GSCSC D+W
Sbjct: 650 DTNRFHHFRDGSCSCRDYW 668



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 201/433 (46%), Gaps = 75/433 (17%)

Query: 112 PQQAICLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
           P     L+ L L NN  +  D   Y  L +   +   + +GKL+H H++ + F +D+ + 
Sbjct: 70  PNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIK 129

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN------------------AD 211
           N+++ MYA CG L  AR++FDE  V D+V+W S++ GY                     D
Sbjct: 130 NSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRD 189

Query: 212 NVEEAKFIYNKMP------------------------ERNIIASNSMIVLFGRKGNVAEA 247
            +   +F  + +                         + N+   +S++ ++ R G + E+
Sbjct: 190 GLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRES 249

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             +F E+  K+ VSW+ALIS + +    EEAL LF+ M        E    ++L + +  
Sbjct: 250 RLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTT 309

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             ++ G  +HA  +K G +    + N L+HMY+  G I  A+K+FD    +D++S NSM+
Sbjct: 310 GSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSML 369

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
            GY + G  ++A  LF+ M+                         L++E     I P++ 
Sbjct: 370 IGYAQHGLGKEAVELFEEMM-------------------------LWVE-----IEPNDI 399

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T +SV++AC+H   LD+G +    ++K GL+      TT++D++ + G +D A       
Sbjct: 400 TFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEM 459

Query: 488 E-EKGVSSWNALI 499
             E   + W AL+
Sbjct: 460 PIEPNATIWGALL 472



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 197/465 (42%), Gaps = 61/465 (13%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE---MSYSFKI 87
           +I    L++C    +  Q   +++ T L+   F    +IK S  L  + +   +  + ++
Sbjct: 92  TIYNKLLKRCTMLGKLKQ--GKLVHTHLMNSKFRNDLVIKNSI-LFMYAKCGSLEIARQV 148

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQA---ICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           F  +   +   + +M+  Y Q      A   + L+  M+ + +  + +    L +     
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL 208

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S  +GK IH    K GF  +V+V ++L++MYA CG+L  +R +FDE    + VSWN+++
Sbjct: 209 GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALI 268

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIAS--------------------------------- 231
           +G+      EEA  ++ KM      A+                                 
Sbjct: 269 SGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKK 328

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                 N+++ ++ + GN+ +A ++F  + K D+VS ++++  Y Q+ + +EA+ LF  M
Sbjct: 329 LVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEM 388

Query: 286 IDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +    +  +++  +SVL+AC++  ++  G     L  K G+E  ++    ++ ++   G 
Sbjct: 389 MLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGL 448

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG---- 400
           +  A+   +       I  N+ I G L   S         A   + V+       G    
Sbjct: 449 LDQAKSFIEEMP----IEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTL 504

Query: 401 ----YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
               YA   Q+ +   +  EM+  G++ + A     I    H+ +
Sbjct: 505 LSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFS 549


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 350/632 (55%), Gaps = 32/632 (5%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--ERN 227
           N++I    +C D   A KLFDE P  + +SW +I+ G+++   V EA+  +N MP  +++
Sbjct: 125 NSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKD 184

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +   N+M+  +   G V +A RLF +MP +D++SW+++I   ++N    +AL  F NM+ 
Sbjct: 185 VATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVG 244

Query: 288 HR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V +    +V  LSA A +    AG  +H    K G  C                   
Sbjct: 245 FSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCC------------------- 285

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                      LD     S+++ Y  C  +  A  +F   + K+VV W+ +++G   +D+
Sbjct: 286 ----------GLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDK 335

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L +F EM    + P+E++  S +++C  L  L++G+ IHA   K GL+     G +
Sbjct: 336 HVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNS 395

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+ MY K G + +AL VF G  EK V SWN++I+G A +G    +L +F EM + GV  +
Sbjct: 396 LVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESD 455

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EIT  G+L AC   G++ +    F    ++  ++   +HY CMVD+LGR G ++EAE L 
Sbjct: 456 EITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALA 515

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            SMP+  +   W  LL AC+ H   ++ ER  +++ E++PD    +VLLSN++AS  RW 
Sbjct: 516 TSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWL 575

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V  +R  M   G+VK PG S I   G+ HEFL+ DR+HP   EI   L  +  KL+  G
Sbjct: 576 EVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELG 635

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PD      D++ E+ E  L  HSE+LAIAFGL++    + I IMKNLR+C DCHTA  
Sbjct: 636 YIPDQQFALHDVEIEQNEEMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAIT 695

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +++  +REIVVRD  RFHHFK+G CSC D+W
Sbjct: 696 LMAKIVNREIVVRDSSRFHHFKNGICSCGDYW 727



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 194/427 (45%), Gaps = 50/427 (11%)

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRL 250
           ++P     S N     ++    ++ A+ ++NK+P  ++     +++ +    N+ EA  L
Sbjct: 51  QNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINL 110

Query: 251 FKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           F ++P   KD +SW+++I          +A ++  + +    + DE+   + +S      
Sbjct: 111 FNQIPSNTKDTISWNSVI----------KASIICNDFVTAVKLFDEMPQRNSIS------ 154

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--DLISWNSM 366
                                     +IH + S G +  AE+ F+A   +  D+ +WN+M
Sbjct: 155 -----------------------WTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAM 191

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPD 425
           ++GY   G V  A  LF  M  +DV+SW+++I G  ++ +  + L  F  M    G+   
Sbjct: 192 VNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGIS 251

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGL--KINSILGTTLIDMYMKLGCVDNALEV 483
             TLV  +SA   ++    G  IH  + K G    ++  +  +L+  Y     + +A +V
Sbjct: 252 STTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKV 311

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F  T  K V  W AL+ G  +N    ++LE+FSEM +  V PNE +F   L +C  +GL 
Sbjct: 312 FGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSC--VGLE 369

Query: 544 D-EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           D E  R  ++   +  LE        +V +  + G + +A  + + +    +V +W +++
Sbjct: 370 DLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGI-CEKNVVSWNSVI 428

Query: 603 GACKKHG 609
             C +HG
Sbjct: 429 VGCAQHG 435



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 188/467 (40%), Gaps = 107/467 (22%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL--- 143
           +F  + SP+  ++  ++ AY   N   +AI L+  + +N    D  ++  + +AS +   
Sbjct: 79  VFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTK--DTISWNSVIKASIICND 136

Query: 144 -------------RLSVFEGKLIHDHVLKAG--------------FDSDVYVNNTLINMY 176
                        R S+    +IH   L  G               D DV   N ++N Y
Sbjct: 137 FVTAVKLFDEMPQRNSISWTTIIHG-FLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGY 195

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA------ 230
              G ++ A +LF + P  D++SW SI+ G        +A F +  M   + +       
Sbjct: 196 CNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTL 255

Query: 231 ------------------------------------SNSMIVLFGRKGNVAEACRLFKEM 254
                                               S S++  +     + +AC++F E 
Sbjct: 256 VCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGET 315

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             K++V W+AL++    N+ + EAL +F  M+   V+ +E    S L++C  L  ++ G 
Sbjct: 316 VCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGR 375

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +HA  +K+G+E  +   N+L+ MYS CG I  A  +F      +++SWNS+I       
Sbjct: 376 VIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVI------- 428

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                    G AQH   +  L LF EM   G+  DE TL  ++S
Sbjct: 429 ------------------------VGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLS 464

Query: 435 ACTHLVALDQGKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNA 480
           AC+    L + +    Y  RK  +K+       ++D+  + G V+ A
Sbjct: 465 ACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEA 511



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 147/370 (39%), Gaps = 76/370 (20%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           D F ++ L+ F         M  + K+F      N  ++  ++      +   +A+ ++ 
Sbjct: 288 DEFVSASLVTFYASCK---RMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFS 344

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
            M+  NV V N +    A  S + L   E G++IH   +K G ++ VY  N+L+ MY+ C
Sbjct: 345 EMMRFNV-VPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKC 403

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG 239
           G +  A  +F      ++VSWNS++ G                                 
Sbjct: 404 GFIGDALCVFKGICEKNVVSWNSVIVGC-------------------------------A 432

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G    A  LFKEM ++ + S                               DE+ +  
Sbjct: 433 QHGCGTWALVLFKEMLREGVES-------------------------------DEITLTG 461

Query: 300 VLSACANLTVV-KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-N 357
           +LSAC+   ++ KA       A K  ++  +     ++ +   CGE+  AE L  +    
Sbjct: 462 LLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVE 521

Query: 358 LDLISWNSMISGYLKCGSVE----KARALFDAMIEKDVVSWSTMISG-YAQHDQFSETLS 412
            + + W  ++S      S++     A+ +F+  +E D  +   ++S  YA   ++ E   
Sbjct: 522 ANSMVWLVLLSACRVHSSLDVAERAAKRIFE--MEPDCSAAYVLLSNLYASSRRWLEVAR 579

Query: 413 LFMEMQHHGI 422
           + M+M+H+GI
Sbjct: 580 IRMKMKHNGI 589


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/568 (38%), Positives = 331/568 (58%), Gaps = 32/568 (5%)

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           G V    +  A  + +   + +++  N ++ ++ + G + +A R+F EMP KD+V+W+AL
Sbjct: 101 GKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTAL 160

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           I+ + QN    +AL+LF  M+   +  +   + S+L A  +   +  GT +HA  +K G 
Sbjct: 161 IAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGY 220

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
           +  + + +AL+ MY+                               +CG ++ A+  FD 
Sbjct: 221 QSSVYVGSALVDMYA-------------------------------RCGHMDAAQLAFDG 249

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M  K  VSW+ +ISG+A+  +    L L  +MQ    +P   T  SV SAC  + AL+QG
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG 309

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           KW+HA++ K+GLK+ + +G TL+DMY K G +D+A  VF    +  V SWN ++ G A +
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           GL  ++L+ F +M + G+ PNEI+F+ VL AC H GL+DEG  +F  +++++++EP+  H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE-LMKKYKVEPDVPH 428

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y   VDLLGR G+L  AE  I  MP+ P  A WGALLGAC+ H + E+G     +  EL 
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P   G  +LLSNI+AS GRW DV +VR MM   GV K P CS +E    +H F+A D TH
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
           PQI EI    +E++ K+K  GY PDT  V   +DQ+E+E  L  HSEKLA+AF L+    
Sbjct: 549 PQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPT 608

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFD 773
            +PIRI KN+R+C DCH A KF+S+ ++
Sbjct: 609 GSPIRIKKNIRVCGDCHAAIKFVSKIYE 636



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 181/394 (45%), Gaps = 72/394 (18%)

Query: 147 VFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           V +G+++H H++ + F D+ + + N ++NMYA CG L  AR++FDE P  D+V+W +++A
Sbjct: 103 VEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIA 162

Query: 206 GYVNADNVEEAKFIYNKM------P---------------------------------ER 226
           G+   +   +A  ++ +M      P                                 + 
Sbjct: 163 GFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQS 222

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   ++++ ++ R G++  A   F  MP K  VSW+ALIS + +    E AL L   M 
Sbjct: 223 SVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                       SV SACA++  ++ G  VHA  +K G++    + N L+ MY+  G I 
Sbjct: 283 RKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSID 342

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A+++FD     D++SWN                               TM++G AQH  
Sbjct: 343 DAKRVFDRLVKPDVVSWN-------------------------------TMLTGCAQHGL 371

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             ETL  F +M   GI P+E + + V++AC+H   LD+G +    ++K  ++ +     T
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVT 431

Query: 467 LIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
            +D+  ++G +D A         E   + W AL+
Sbjct: 432 FVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 139/305 (45%), Gaps = 39/305 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + + +   +  ++  + Q N P+ A+ L+  ML   +  +++T   L +AS    
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEH 203

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G  +H   LK G+ S VYV + L++MYA CG + AA+  FD  P    VSWN++++
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------I 228
           G+      E A  +  KM  +N                                     +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 229 IA--SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           IA   N+++ ++ + G++ +A R+F  + K D+VSW+ +++   Q+ + +E L  F  M+
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  +E+  + VL+AC++  ++  G     L  K  +E  +      + +    G + 
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 347 TAEKL 351
            AE+ 
Sbjct: 444 RAERF 448



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 14/251 (5%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMKLG 475
           +Q   + PD      ++  CT L  ++QG+ +HA++  +    N  +L   +++MY K G
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           C+D+A  +F     K + +W ALI GF+ N     +L +F +M + G+ PN  T   +L 
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLK 197

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A      +D G    ++   ++  + +      +VD+  R G +  A+   + MP   +V
Sbjct: 198 ASGSEHGLDPG-TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 596 ATWGALLG--ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA----SKGRWDDVL 649
            +W AL+   A K  G+H +      +    QP H  +  + S   +     +G+W    
Sbjct: 257 -SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKW---- 311

Query: 650 EVRGMMVRRGV 660
            V   M++ G+
Sbjct: 312 -VHAHMIKSGL 321


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/674 (35%), Positives = 372/674 (55%), Gaps = 63/674 (9%)

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           N+  +   +    Q+   R S+  GK +H  ++ +GF SD ++ N L++MY+  GD  +A
Sbjct: 39  NIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSA 98

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVA 245
                                            +Y +M ++N ++SN +I  + R G++ 
Sbjct: 99  VA-------------------------------VYGRMRKKNYMSSNILINGYVRAGDLV 127

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            A ++F EMP + L +W+A+I+   Q E  EE L LF  M       DE  + SV S  A
Sbjct: 128 NARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSA 187

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            L  V  G  +H   +K G+E  + + ++L HMY                          
Sbjct: 188 GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMY-------------------------- 221

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
                ++ G ++    +  +M  +++V+W+T+I G AQ+      L L+  M+  G RP+
Sbjct: 222 -----MRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPN 276

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           + T V+V+S+C+ L    QG+ IHA   K G      + ++LI MY K GC+ +A + F 
Sbjct: 277 KITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVD 544
             E++    W+++I  +  +G  D+++E+F+ M +++ +  NE+ F+ +L AC H GL D
Sbjct: 337 EREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKD 396

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           +G   F+ M++++  +P  KHY C+VDLLGRAG L +AE +I SMP+  D+  W  LL A
Sbjct: 397 KGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA 456

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C  H + EM +RV ++++++ P+    +VLL+N+HAS  RW DV EVR  M  + V K  
Sbjct: 457 CNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEA 516

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           G S  E  G +H+F  GDR+  +  EI + L E+  ++KL+GY PDT  V  D+D+EEKE
Sbjct: 517 GISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKE 576

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
           + L +HSEKLA+AF L+ +    PIRI+KNLR+C+DCH A K+IS   +REI +RD  RF
Sbjct: 577 SDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRF 636

Query: 785 HHFKHGSCSCMDFW 798
           HHF +G CSC D+W
Sbjct: 637 HHFINGKCSCGDYW 650



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/435 (20%), Positives = 178/435 (40%), Gaps = 73/435 (16%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI------ 79
           N S+    +Q C   QS     Q+   ++++G  +D F  + L+   + L  F       
Sbjct: 43  NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVY 102

Query: 80  ----------------------EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
                                 ++  + K+F  +       +N M+   IQ    ++ + 
Sbjct: 103 GRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLS 162

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
           L++ M       D YT   +   SA   SV  G+ IH + +K G + D+ VN++L +MY 
Sbjct: 163 LFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM 222

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY----------NKMPERN 227
             G L     +    PV +LV+WN+++ G       E   ++Y          NK+    
Sbjct: 223 RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVT 282

Query: 228 IIASNS-----------------------------MIVLFGRKGNVAEACRLFKEMPKKD 258
           +++S S                             +I ++ + G + +A + F E   +D
Sbjct: 283 VLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDED 342

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACANLTVVKAGTSVH 317
            V WS++IS Y  +   +EA+ LF  M +   M ++EV  +++L AC++  +   G  + 
Sbjct: 343 EVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELF 402

Query: 318 ALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGS 375
            + V K G +  +     ++ +    G +  AE +  +     D++ W +++S      +
Sbjct: 403 DMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKN 462

Query: 376 VEKARALFDAMIEKD 390
            E A+ +F  +++ D
Sbjct: 463 AEMAQRVFKEILQID 477


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 332/562 (59%), Gaps = 32/562 (5%)

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G V++A  +F +MP +D+VSW+ LI+ Y QN M  EA+ L  +M+  R   +   
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
             S+L A         G  +HALAVK   +  + + +AL+ MY+                
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA---------------- 104

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
                          +C  ++ A  +FD ++ K+ VSW+ +I+G+A+      TL  F E
Sbjct: 105 ---------------RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ +G      T  S+ SA   + AL+QG+W+HA++ K+G K+ + +G T++ MY K G 
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 209

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A +VF   +++ + +WN ++   A  GL  +++  F E++K G+  N+ITF+ VL A
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV EG +H+  M++++ ++P   HY   VDLLGRAG+LKEA   +  MPM P  A
Sbjct: 270 CSHGGLVKEG-KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 328

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WGALLGAC+ H + +MG+     + EL PD  G  VLL NI+AS G+W+D   VR MM 
Sbjct: 329 VWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMK 388

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
             GV K P CS ++    +H F+A D THP+  +I  M +E+  ++K  GY P+T  V  
Sbjct: 389 ATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLL 448

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
            I+++E+ET L  HSEK+A+AF LI +     IRIMKN+RIC DCH+A K++S+ F REI
Sbjct: 449 HINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREI 508

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           VVRD +RFHHF  GSCSC D+W
Sbjct: 509 VVRDTNRFHHFSEGSCSCGDYW 530



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 152/365 (41%), Gaps = 71/365 (19%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN----------ADNVEEAKFIYNKMP 224
           MY  CG +S AR +FD+ P  D+VSW  ++AGY              ++  A+F  N   
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 225 -----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                        + ++   ++++ ++ R   +  A  +F  + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            K+ VSW+ALI+ + +    E  L+ F  M  +          S+ SA A +  ++ G  
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VHA  +K G +    + N ++ MY+  G +  A K+FD     DL++WN           
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWN----------- 229

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
                               TM++  AQ+    E ++ F E++  GI+ ++ T +SV++A
Sbjct: 230 --------------------TMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL-EVFHGTEEKGVSS 494
           C+H   + +GK     ++   ++       + +D+  + G +  AL  VF    E   + 
Sbjct: 270 CSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAV 329

Query: 495 WNALI 499
           W AL+
Sbjct: 330 WGALL 334



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 39/266 (14%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  + S +   +  ++  Y Q  +P +AI L   ML      + +T+  L +A+     
Sbjct: 14  VFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGG 73

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ +H   +K  +D DVYV + L++MYA C  +  A  +FD     + VSWN+++AG
Sbjct: 74  CSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAG 133

Query: 207 YVNADNVEE---------------AKFIYNKM------------------------PERN 227
           +    + E                  F Y+ M                         +  
Sbjct: 134 FARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLT 193

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               N+M+ ++ + G++ +A ++F  M K+DLV+W+ +++   Q  + +EA+  F  +  
Sbjct: 194 AFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRK 253

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAG 313
             + ++++  +SVL+AC++  +VK G
Sbjct: 254 CGIQLNQITFLSVLTACSHGGLVKEG 279



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 40/228 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +M  +  +F  L S N   +N ++  + ++   +  +  +  M  N  G  ++TY  +  
Sbjct: 108 QMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 167

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +G+ +H H++K+G     +V NT++ MYA  G +  ARK+FD     DLV+
Sbjct: 168 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 227

Query: 200 WN-----------------------------------SILAGYVNADNVEEAKFIYNKMP 224
           WN                                   S+L    +   V+E K  ++ M 
Sbjct: 228 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK 287

Query: 225 ERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
           + N+        S + L GR G + EA     +MP +   + W AL+ 
Sbjct: 288 DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG 335


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 333/587 (56%), Gaps = 38/587 (6%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++F EM  +++V ++ +I  Y  N  Y++ L++F  M++     D      VL AC+   
Sbjct: 74  KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            ++ G  +H   +K+G++  + + N LI MY  CG +  A ++FD     D++SWNSM++
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVA 193

Query: 369 GYLK----------CGSVEK---------------------------ARALFDAMIEKDV 391
           GY            C  +E                               +F  +  K++
Sbjct: 194 GYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNL 253

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           +SW+ MI  Y ++   ++ + L+++M+   + PD  T  SV+ AC  L AL  G+ IH Y
Sbjct: 254 ISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEY 313

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + K  L  N +L  +LIDMY + GC+D+A  VF   + + V+SW +LI  + M G    +
Sbjct: 314 VEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNA 373

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           + +F+EM  SG  P+ I FV +L AC H GL+DEG  +F  M  ++R+ P  +HY C+VD
Sbjct: 374 VALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVD 433

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LLGRAG + EA  +I+ MP+ P+   W  LL +C+   + ++G      L++L P+  G+
Sbjct: 434 LLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGY 493

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VLLSNI+A  GRW +V E+R +M R+ + K PG S +E N  +H FLAGD +HPQ  EI
Sbjct: 494 YVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEI 553

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
              L  +  K+K  GY P+T     D+++E+KE  L  HSEKLAI F L+  +    IRI
Sbjct: 554 YEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLN-TQEYQIRI 612

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLR+C DCH AAK IS+  +REI+VRD +RFHHFK G CSC D+W
Sbjct: 613 TKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  199 bits (505), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 146/517 (28%), Positives = 243/517 (47%), Gaps = 74/517 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E   + K+F  +   N   +N M+R+Y+  +     + +++ M+N     DNYTYP + +
Sbjct: 68  EPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLK 127

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A +   ++  G LIH  VLK G D +++V N LI MY  CG L  AR++FDE    D+VS
Sbjct: 128 ACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVS 187

Query: 200 WNSILAGYVNADNVEEAKFI------YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
           WNS++AGY +    ++A  I      Y + P+   +AS    V      NV    ++F  
Sbjct: 188 WNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVN 247

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           + +K+L+SW+ +I  Y +N +  +A+ L++ M   RV  D +   SVL AC +L+ +  G
Sbjct: 248 LERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLG 307

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H    K  +   + L+N+LI MY+ CG +  A+++FD     D+ SW S+IS Y   
Sbjct: 308 RRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMT 367

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G                               Q    ++LF EM + G  PD    V+++
Sbjct: 368 G-------------------------------QGCNAVALFTEMLNSGQAPDSIAFVAIL 396

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SAC+H   LD+G+ I+     +  +I     T  I+ Y    C+ + L            
Sbjct: 397 SACSHSGLLDEGR-IYFKQMTDDYRI-----TPRIEHY---ACLVDLL------------ 435

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
                       G A +  E ++ +K+  + PNE  +  +L +CR    +D G    +++
Sbjct: 436 ------------GRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNL 483

Query: 554 IQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
           +Q   L P  S +Y  + ++  +AG  KE  E+   M
Sbjct: 484 LQ---LAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVM 517



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 21/319 (6%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  Y  CG     R +FD M +++VV ++ MI  Y  + ++ + L +F EM + G RPD
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T   V+ AC+    L  G  IH  + K GL  N  +G  LI MY K GC+  A  VF 
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K V SWN+++ G+A N   D +LE+  EM+  G  P+  T   ++ A  +      
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVAN---TSS 235

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL---IESMPMSPDVATWGALL 602
            +  +   I  +    N   +  M+ +  +  +  +A +L   +E   + PD  T+ ++L
Sbjct: 236 ENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVL 295

Query: 603 GACKKHGDHEMGERVGRKLVE---LQPDHDGFHVLLSN----IHASKGRWDDVLEVRGMM 655
            AC       +G R+  + VE   L P+     +LL N    ++A  G  DD   V   M
Sbjct: 296 PACGDLSALLLGRRI-HEYVEKKKLCPN-----LLLENSLIDMYARCGCLDDAKRVFDRM 349

Query: 656 VRRGVVKIPGCSMIEANGI 674
             R V      S+I A G+
Sbjct: 350 KFRDVASWT--SLISAYGM 366


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/750 (32%), Positives = 391/750 (52%), Gaps = 65/750 (8%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLML----NNNVGVDNYTYPLLAQASALRLSVFE 149
           PN F F  +M++       + A+ L  L+      ++  V      +L +  A+  +  +
Sbjct: 157 PNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQ 216

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
              I +          +   N+++  YA    +  A ++F   P  D+VSWN +++    
Sbjct: 217 FSRIKNPT--------IICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268

Query: 210 ADNVEEA----------------------------------------KFIYNKMPERNII 229
           +  V EA                                        + I N +P  +  
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRN-LPHIDPY 327

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            +++M+ L+ + G   EA R+F  +  ++ VSW+ LI  + Q   + E++ LF  M    
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL 387

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           + VD+  + +++S C N   +  G+ +H+L +K G    + + N+LI MY+ CG +  AE
Sbjct: 388 MAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAE 447

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +F+     D++SW  MI+ Y + G++ KAR  FD M  ++V++W+ M+  Y QH    +
Sbjct: 448 LIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEED 507

Query: 410 TLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            L ++ +M     + PD  T V++   C  + A   G  I  +  K GL +++ +   +I
Sbjct: 508 GLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVI 567

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            MY K G +  A + F     K + SWNA+I G++ +G+  +++E+F ++   G  P+ I
Sbjct: 568 TMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYI 627

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           ++V VL  C H GLV+EG  +F+ M ++H + P  +H+ CMVDLLGRAG L EA+ LI+ 
Sbjct: 628 SYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDE 687

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MPM P    WGALL ACK HG++++ E   + L +L     G ++LL+ ++A  G+ DD 
Sbjct: 688 MPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDS 747

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
            +VR +M  +G+ K PG S +E N  +H F A D +HPQ+  I   LDE+ +K+   GY 
Sbjct: 748 AQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYV 807

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
                      + E   +   HSEKLA+AFG++++    PI IMKNLRIC+DCHT  K I
Sbjct: 808 -----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLI 856

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S   DRE V+RD  RFHHFK GSCSCMD+W
Sbjct: 857 STVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 233/507 (45%), Gaps = 62/507 (12%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           ++   R ++   + +H  ++  G  S V++ NTL++ Y  CG LS AR L          
Sbjct: 33  RSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNL---------- 82

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                               + +++ E N+I  N M+  + + G++++A  LF  MP +D
Sbjct: 83  --------------------LRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRD 122

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           + SW+ ++S Y Q+  +  AL +F++M      + +      V+ +C  L   +    + 
Sbjct: 123 VASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLL 182

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
            L  K   +   ++Q AL+ M   CG +  A K F    N  +I  NSM+ GY K   V+
Sbjct: 183 GLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVD 242

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            A  +F +M E+DVVSW+ +IS  ++  +  E L + ++M   G+RPD  T  S ++AC 
Sbjct: 243 HALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACA 302

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
            L +L+ GK +H  + +N   I+  + + ++++Y K GC   A  VF    ++   SW  
Sbjct: 303 RLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTV 362

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC-----------RHMGLVDEG 546
           LI GF   G   +S+E+F++M+   +  ++     ++  C            H   +  G
Sbjct: 363 LIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSG 422

Query: 547 HRHF----NSMIQEHRLEPNSKH---------------YGCMVDLLGRAGMLKEAEELIE 587
           H       NS+I  +    N ++               +  M+    + G + +A E  +
Sbjct: 423 HTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFD 482

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMG 614
            M  + +V TW A+LGA  +HG  E G
Sbjct: 483 DMS-TRNVITWNAMLGAYIQHGAEEDG 508



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 187/422 (44%), Gaps = 66/422 (15%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   +  S +   Q+  Q+I      D + AS +++       F E     ++F+ L   
Sbjct: 299 TACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAK---RVFSSLRDR 355

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +  ++  ++Q     +++ L+  M    + VD +    L       + +  G  +H
Sbjct: 356 NSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLH 415

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              LK+G    V V+N+LI+MYA CG+L  A  +F+     D+VSW  ++  Y    N+ 
Sbjct: 416 SLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIA 475

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+  ++ M  RN+I  N+M                               +  Y Q+  
Sbjct: 476 KAREFFDDMSTRNVITWNAM-------------------------------LGAYIQHGA 504

Query: 275 YEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
            E+ L ++ +M+  + V+ D V  V++   CA++   K G  +    VK+G+    ++ N
Sbjct: 505 EEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVN 564

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           A+I MYS CG I+ A K FD     DL+SWN+MI+GY + G  ++A  +FD ++ K    
Sbjct: 565 AVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNK---- 620

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                      G +PD  + V+V+S C+H   +++GK+    ++
Sbjct: 621 ---------------------------GAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMK 653

Query: 454 KN 455
           ++
Sbjct: 654 RD 655



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 154/340 (45%), Gaps = 45/340 (13%)

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAG 355
           +   L +C   + +    ++H+  + +G+   + LQN L+H Y SCG ++ A  L  D  
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              ++I+ N M++GY K GS+  A  LF  M  +DV SW+T++SGY Q  QF   L +F+
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 416 EMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            M+  G   P+  T   V+ +C  L   +    +   + K   + +  + T L+DM ++ 
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +D A + F   +   +   N++++G+A +   D +LE+F  M +  V           
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVS--------- 258

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PM 591
                                          +  ++  L ++G ++EA +++  M    +
Sbjct: 259 -------------------------------WNMVISALSKSGRVREALDMVVDMHGKGV 287

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
            PD  T+ + L AC +    E G+++  +++   P  D +
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/802 (33%), Positives = 423/802 (52%), Gaps = 86/802 (10%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           QI+  +  +GL+ D F  S L+   +       +SY+ K+F  +E+ N    N +M   +
Sbjct: 229 QIMCTIQKSGLLTDLFVGSGLV---SAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLV 285

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS-----ALRLSVFEGKLIHDHVLKAGF 162
           ++   ++A  L+ + +N+ + V   +Y +L  +      A  + + +G+ +H HV+  G 
Sbjct: 286 RQKWGEEATKLF-MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGL 344

Query: 163 -DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
            D  V + N L+NMYA CG ++ AR++F      D VSWNS++ G        EA   Y 
Sbjct: 345 VDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYK 404

Query: 222 KMPERNII---------------------------------------ASNSMIVLFGRKG 242
            M   +I+                                        SN+++ L+   G
Sbjct: 405 SMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETG 464

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEM-YEEALVLFMNMIDHRVMVDEVVVVSVL 301
            + E  ++F  MP+ D VSW+++I    ++E    EA+V F+N       ++ +   SVL
Sbjct: 465 YLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVL 524

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
           SA ++L+  + G  +H LA+K  I      +NALI  Y                      
Sbjct: 525 SAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYG--------------------- 563

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                     KCG ++    +F  M E+ D V+W++MISGY  ++  ++ L L   M   
Sbjct: 564 ----------KCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQT 613

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G R D     +V+SA   +  L++G  +HA   +  L+ + ++G+ L+DMY K G +D A
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 673

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRH 539
           L  F+    +   SWN++I G+A +G  +++L++F  MK  G TP + +TFVGVL AC H
Sbjct: 674 LRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSH 733

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL++EG +HF SM   + L P  +H+ CM D+LGRAG L + E+ IE MPM P+V  W 
Sbjct: 734 AGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWR 793

Query: 600 ALLGACKKHGDH--EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
            +LGAC +      E+G++    L +L+P++   +VLL N++A+ GRW+D+++ R  M  
Sbjct: 794 TVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKD 853

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
             V K  G S +     +H F+AGD++HP  + I   L E+ +K++  GY P T    +D
Sbjct: 854 ADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYD 913

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITI-SPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           ++QE KE  L  HSEKLA+AF L    S   PIRIMKNLR+C DCH+A K+IS+   R+I
Sbjct: 914 LEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQI 973

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           ++RD +RFHHF+ G+CSC DFW
Sbjct: 974 ILRDSNRFHHFQDGACSCSDFW 995



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 212/502 (42%), Gaps = 80/502 (15%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           +  H  + K   D DVY+ N LIN Y   GD  +ARK+FDE P+ + VSW  I++GY   
Sbjct: 21  RFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRN 80

Query: 211 DNVEEAKFIYNKMPERNIIASN--------------SMIVLFGRK--------------- 241
              +EA      M +  I ++               S+ +LFGR+               
Sbjct: 81  GEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140

Query: 242 -------------GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
                        G+V  A   F ++  K+ VSW+++IS Y Q      A  +F +M   
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
                E    S+++   +LT                 E  + L   ++      G +T  
Sbjct: 201 GSRPTEYTFGSLVTTACSLT-----------------EPDVRLLEQIMCTIQKSGLLT-- 241

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                     DL   + ++S + K GS+  AR +F+ M  ++ V+ + ++ G  +     
Sbjct: 242 ----------DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGE 291

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVIS----ACTHLVALDQGKWIHAYIRKNGLKINSI-L 463
           E   LFM+M        E+ ++ + S    +    V L +G+ +H ++   GL    + +
Sbjct: 292 EATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           G  L++MY K G + +A  VF+   +K   SWN++I G   NG   +++E +  M++  +
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411

Query: 524 TPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
            P   T +  L +C  +     G + H  S+  +  ++ N      ++ L    G L E 
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLYAETGYLNEC 469

Query: 583 EELIESMPMSPDVATWGALLGA 604
            ++  SMP   D  +W +++GA
Sbjct: 470 RKIFSSMP-EHDQVSWNSIIGA 490



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/568 (21%), Positives = 240/568 (42%), Gaps = 84/568 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-- 143
           K+F  +   N   +  ++  Y +    ++A+   + M+   +  + Y +  + +A     
Sbjct: 57  KVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIG 116

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNS 202
            + +  G+ IH  + K  +  D  V+N LI+MY  C G +  A   F +  V + VSWNS
Sbjct: 117 SVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNS 176

Query: 203 ILAGYVNADNVEEAKFIYNKM------------------------PE------------- 225
           I++ Y  A +   A  I++ M                        P+             
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQK 236

Query: 226 ----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                ++   + ++  F + G+++ A ++F +M  ++ V+ + L+    + +  EEA  L
Sbjct: 237 SGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL 296

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTV-----VKAGTSVHALAVKIG-IECYINLQNAL 335
           FM+M +  + V     V +LS+    ++     +K G  VH   +  G ++  + + N L
Sbjct: 297 FMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           ++MY+ CG I  A ++F    + D +SWNSM                             
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSM----------------------------- 386

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
             I+G  Q+  F E +  +  M+ H I P   TL+S +S+C  L     G+ IH    K 
Sbjct: 387 --ITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKL 444

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA-DKSLEM 514
           G+ +N  +   L+ +Y + G ++   ++F    E    SWN++I   A +  +  +++  
Sbjct: 445 GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVC 504

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F   +++G   N ITF  VL A   +   + G +  + +  ++ +   +     ++   G
Sbjct: 505 FLNAQRAGQKLNRITFSSVLSAVSSLSFGELG-KQIHGLALKNNIADEATTENALIACYG 563

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALL 602
           + G +   E++   M    D  TW +++
Sbjct: 564 KCGEMDGCEKIFSRMAERRDNVTWNSMI 591



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 175/402 (43%), Gaps = 45/402 (11%)

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           +Y    ++++   N++I  +   G+   A ++F EMP ++ VSW+ ++S Y +N  ++EA
Sbjct: 27  LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEA 86

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA--GTSVHALAVKIGIECYINLQNALI 336
           LV   +M+   +  ++   VSVL AC  +  V    G  +H L  K+       + N LI
Sbjct: 87  LVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLI 146

Query: 337 HMYSSC-GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
            MY  C G +  A   F      + +SWNS+IS Y + G                     
Sbjct: 147 SMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAG--------------------- 185

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG--KWIHAYIR 453
                    DQ S    +F  MQ+ G RP E T  S+++    L   D    + I   I+
Sbjct: 186 ---------DQRS-AFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQ 235

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K+GL  +  +G+ L+  + K G +  A +VF+  E +   + N L++G       +++ +
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295

Query: 514 MFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-----G 567
           +F +M     V+P   ++V +L +     L +E        +  H +      +      
Sbjct: 296 LFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGN 353

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +V++  + G + +A  +   M    D  +W +++    ++G
Sbjct: 354 GLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITGLDQNG 394



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 36/334 (10%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +L+    + D+   N++I+ YL+ G    AR +FD M  ++ VSW+ ++SGY+++ +  E
Sbjct: 26  RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHL--VALDQGKWIHAYIRKNGLKINSILGTTL 467
            L    +M   GI  ++   VSV+ AC  +  V +  G+ IH  + K    +++++   L
Sbjct: 86  ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145

Query: 468 IDMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           I MY K +G V  AL  F   E K   SWN++I  ++  G    +  +FS M+  G  P 
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205

Query: 527 EITFVG-VLGACRHMGLVDEGHRHFNSM---IQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           E TF   V  AC    L +   R    +   IQ+  L  +      +V    ++G L  A
Sbjct: 206 EYTFGSLVTTAC---SLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR------KLVELQPDHDGFHVLLS 636
            ++   M     V   G ++G  ++    + GE   +       ++++ P  + + +LLS
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQ----KWGEEATKLFMDMNSMIDVSP--ESYVILLS 316

Query: 637 N---------IHASKGRWDDVLEVRGMMVRRGVV 661
           +         +   KGR     EV G ++  G+V
Sbjct: 317 SFPEYSLAEEVGLKKGR-----EVHGHVITTGLV 345


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/774 (34%), Positives = 405/774 (52%), Gaps = 70/774 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAY--IQRNVPQQAICLYKLMLNNNVGVDNYTY-PL 136
           +++ +  +F  + S +   FN+++ A    +R +P  A+   + ML     + ++T   +
Sbjct: 111 DLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLP--ALDALRDMLLEGHPLSSFTLVSV 168

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGF-DSD-VYVNNTLINMYAVCGDLSAARKLFD---- 190
           L   S L   +  G+  H   LK GF D D  +  N L++MYA  G +  A+ LF     
Sbjct: 169 LLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDT 228

Query: 191 -ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--------------------- 228
            +SP   +V+WN++++  V +    EA  +   M  R +                     
Sbjct: 229 TDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLS 288

Query: 229 --------------IASNSMIV-----LFGRKGNVAEACRLFKEMPK--KDLVSWSALIS 267
                         +A+NS +      ++     V  A R+F  +P   + L  W+A++ 
Sbjct: 289 LGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVC 348

Query: 268 CYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
            Y Q  M EEAL LF  M  +  V+  E  +  VL ACA         +VH   +K G+ 
Sbjct: 349 GYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMA 408

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
               +QNAL+ +Y+  G++  A  +F A    D++SWN++I+G +  G +  A  L   M
Sbjct: 409 DNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREM 468

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            ++   + +T   G A  D+               + P+  TL++++  C  L A  +GK
Sbjct: 469 QQQGRFTDATTEDGIAGTDE-------------EPVVPNNVTLMTLLPGCAMLAAPAKGK 515

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH Y  ++ L  +  +G+ L+DMY K GC+  +  VF    ++ V +WN LI+ + M+G
Sbjct: 516 EIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHG 575

Query: 507 LADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           L D+++ +F  M  S    PNE+TF+  L AC H G+VD G   F+SM + H ++P    
Sbjct: 576 LGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDL 635

Query: 566 YGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           + C VD+LGRAG L EA  +I SM P    V+ W + LGAC+ H +  +GE    +L +L
Sbjct: 636 HACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQL 695

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +PD    +VLL NI+++ G W+   EVR  M +RGV K PGCS IE +G+IH F+AG+  
Sbjct: 696 EPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESA 755

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP+   +   +D + ++++ +GY PDT  V  DI++ EK   L  HSEKLAIAFGL+   
Sbjct: 756 HPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTP 815

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P   IR+ KNLR+CNDCH AAKFISR   REIV+RD  RFHHF  G+CSC D+W
Sbjct: 816 PGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 10/270 (3%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N++++ Y +CG +  A ALF+AM  +D V+++++I+      ++   L    +M   G  
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHP 159

Query: 424 PDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGL--KINSILGTTLIDMYMKLGCVDNA 480
               TLVSV+ AC+HL   L  G+  HA+  KNG            L+ MY +LG VD+A
Sbjct: 160 LSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDA 219

Query: 481 LEVFHGTEEK-----GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
             +F   +       GV +WN ++     +G   +++E+  +M   GV P+ ITF   L 
Sbjct: 220 QMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALP 279

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS-PD 594
           AC  + ++  G      ++++  L  NS     +VD+      +  A  + + +P     
Sbjct: 280 ACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQ 339

Query: 595 VATWGALLGACKKHG-DHEMGERVGRKLVE 623
           +  W A++    + G D E  E   R   E
Sbjct: 340 LGLWNAMVCGYAQAGMDEEALELFARMEAE 369


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/507 (43%), Positives = 313/507 (61%), Gaps = 42/507 (8%)

Query: 300 VLSACANLTVV------KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +L+ACA L          AGT+VHA   + G+E                    + ++   
Sbjct: 99  LLAACARLLPAHPPREAAAGTAVHASLFRRGLE--------------------SRDRFIS 138

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQFSETL 411
           A          SM+S Y   G +  AR +FD     ++D+  W++++  Y     ++  L
Sbjct: 139 A----------SMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVL 188

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF +M    +  DE TL++V+SAC+HL ALD G+W HAY  +        LGT L++MY
Sbjct: 189 RLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMY 244

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           M+ G V++A  VFH   +K V +W+ +I G A+NGL   +L++F+EMK  GV P+ IT  
Sbjct: 245 MRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMT 304

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL AC H G+VDEG    + M  E+ L+P  +HYGC+VDLLGRAG L+EA  LIE++P 
Sbjct: 305 AVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPF 364

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
             DVA WGALL AC+ H + +MG+    ++++L P H G  V LSN +A+ G+WD V EV
Sbjct: 365 KADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEV 424

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M    + K PG S++E +G+++EFL+GD +HPQ + I  MLDE+ K L L+G+ P T
Sbjct: 425 RSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPST 484

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
            EVAFDID+E+KE  + +HSEKLA+A GLI+      IRI+KNLRIC DCH+  K +S  
Sbjct: 485 KEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEV 544

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +DR IVVRDR+RFHHFK+GSCSC+D+W
Sbjct: 545 YDRVIVVRDRNRFHHFKNGSCSCLDYW 571



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 167/413 (40%), Gaps = 95/413 (23%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG-VDNYTYPLLAQASALRLSVFEGKL 152
           P  F +NT +R+      P  A+ LY+ ML N +   +NYTYP L               
Sbjct: 55  PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPL--------------- 99

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
                                        L+A  +L    P  +  +  ++         
Sbjct: 100 -----------------------------LAACARLLPAHPPREAAAGTAV--------- 121

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYE 270
              A      +  R+   S SM+  +   G++  A  +F   P  ++DL  W++L+  Y 
Sbjct: 122 --HASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYL 179

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
              +Y   L LF  M    V  DEV +++V+SAC++L  +  G   HA   +       N
Sbjct: 180 SQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRN 235

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           L  AL++MY  CG++ +A  +F    + D+ +W                           
Sbjct: 236 LGTALLNMYMRCGDVESAWSVFHEMLDKDVRTW--------------------------- 268

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIH 449
               S MI+G A +    + L LF EM++ G+ PD  T+ +V+SAC+H   +D+GK ++H
Sbjct: 269 ----SVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLH 324

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALIIG 501
               +  L+        ++D+  + G ++ AL +      K  V+ W AL++ 
Sbjct: 325 CMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLVA 377


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 335/555 (60%), Gaps = 39/555 (7%)

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           ++ A  +F  +   ++ +W+ +   Y +++    AL  +  MI  R+  D      +L A
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            +    V+ G ++H++ ++ G E  + +QN+L+H+Y++C                     
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC--------------------- 178

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
                     G  E A  +F+ M ++D+V+  ++I+G+A + + SE L+LF EM   G+ 
Sbjct: 179 ----------GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVE 228

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  T+VS++SA   L AL+ G+ +H Y+ K GL+ NS +  +L+D+Y K   +      
Sbjct: 229 PDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAI------ 282

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
                E+   SW +LI+G A+NG  +++LE+F EM+  G+ P+EITFVGVL AC H G++
Sbjct: 283 --WEXERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGML 340

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           DEG  +F  M +E  + P  +HYGCMVDLL RAG++K+A E I++MP+ P+  TW  LLG
Sbjct: 341 DEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLG 400

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC  HG   +GE     L++L+P H G +VLLSN++ S+ RW DV  +R  M++ GV K 
Sbjct: 401 ACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKT 460

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
            G S++E    ++EF  G+R+HPQ  ++  +L+++ + LKLEGY P T  V  DI++EEK
Sbjct: 461 SGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK 520

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSEK AIAF  +  +P   IR+MKNLR+C DCH A K +++ +DREIV+RDR R
Sbjct: 521 EQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGR 580

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF+ GSCSC D+W
Sbjct: 581 FHHFRGGSCSCKDYW 595



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 217/518 (41%), Gaps = 146/518 (28%)

Query: 58  LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117
           LI    + S  + ++ ++  ++ +SY++ +F  + +PN F +NTM R Y + + P  A+ 
Sbjct: 58  LIFTIVSLSAPMSYAYNVFTWV-LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALR 116

Query: 118 LYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177
            Y+ M+ + +  D +TYP L +A +  L+V EG+ IH   ++ GF+S V+V N+L+++YA
Sbjct: 117 FYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYA 176

Query: 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL 237
            CGD  +A  +F+                                M +R+++A  S+I  
Sbjct: 177 ACGDTESAHNVFE-------------------------------LMRDRDLVAXISVING 205

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           F   G  +EA  LF+EM  +                                V  D   V
Sbjct: 206 FALNGRPSEALTLFREMSAEG-------------------------------VEPDGFTV 234

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           VS+LSA A L  ++ G  VH   +K+G+    ++ N+L+ +Y+ C  I   E+       
Sbjct: 235 VSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXER------- 287

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            + +SW S+I G                            ++G+ +     E L LF EM
Sbjct: 288 -NAVSWTSLIVG--------------------------LAVNGFGE-----EALELFREM 315

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G+ P E T V V+ AC+H   LD+G     Y R+               M  + G +
Sbjct: 316 EGQGLVPSEITFVGVLYACSHCGMLDEG---FDYFRR---------------MKEEFGIM 357

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
                         +  +  ++   +  GL  ++ E    M    V PN +T+  +LGAC
Sbjct: 358 PR------------IEHYGCMVDLLSRAGLVKQAYEYIQNMP---VQPNAVTWRTLLGAC 402

Query: 538 R---HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
               H+GL +    H        +LEP  KH G  V L
Sbjct: 403 TIHGHLGLGETARSHL------LKLEP--KHSGDYVLL 432


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 342/616 (55%), Gaps = 55/616 (8%)

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEAC 248
           F     L L    S L G+V     E   F+             S+I ++ +   +A A 
Sbjct: 63  FKSCASLSLPLAGSQLHGHVIKTGCEPEPFV-----------QTSLISMYCKCSTIASAR 111

Query: 249 RLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           ++F E    +   V ++ALI+ Y  N  + +A++LF  M    V V+ V ++ ++  CA 
Sbjct: 112 KVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAG 171

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              +  GTS+HA +V+ G++  +++ N L+ MY                           
Sbjct: 172 PIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMY--------------------------- 204

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
               ++CGSV+ AR LFD M EK +++W+ MISGYAQ+      L L+ +M+  GI PD 
Sbjct: 205 ----VRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDP 260

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            TLV V+S+C HL A   G+ +   I  +G   N  L   LI+MY + G +  A  +F G
Sbjct: 261 VTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDG 320

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK V SW A+I G+ M+G  + ++++F EM  S   P+   FV VL AC H GL ++G
Sbjct: 321 MTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKG 380

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             +F +M +++ L+P  +HY C+VDLLGRAG L+EA +LI SM + PD A WGALLGACK
Sbjct: 381 LYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACK 440

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+ E    K++E +P + G++VLLSNI +  G  + +L VR MM  R + K PGC
Sbjct: 441 IHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGC 500

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S +E  G IH FLAGDRTHPQ  EI +MLD +   +K  G + D        DQE +   
Sbjct: 501 SYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDN-------DQESRNEE 553

Query: 727 LFR----HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           L      HSEKLAIAFGLI   P   I ++KNLR+C DCH   K +S   DR++VVRD  
Sbjct: 554 LITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDAT 613

Query: 783 RFHHFKHGSCSCMDFW 798
           RFHHFK+G CSC D+W
Sbjct: 614 RFHHFKNGVCSCKDYW 629



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 186/378 (49%), Gaps = 33/378 (8%)

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+A +    +   ++EAL L+  M+      +         +CA+L++  AG+ +H   
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           +K G E    +Q +LI MY  C  I +A K+FD  H+                     +R
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHH---------------------SR 121

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            L         V ++ +I+GY+ + +FS+ + LF +M+  G+  +  T++ +I  C   +
Sbjct: 122 NL--------AVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPI 173

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
            L  G  +HA   + GL  +  +G  L+ MY++ G VD A ++F G  EKG+ +WNA+I 
Sbjct: 174 HLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMIS 233

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+A NGLA   L+++ +M+ +G+ P+ +T VGVL +C H+G    G R     I+     
Sbjct: 234 GYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAG-REVEQRIELSGFG 292

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
            N      ++++  R G L +A  + + M    +V +W A++     HG  E+  ++  +
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGM-TEKNVISWTAIIAGYGMHGQGELAVQLFDE 351

Query: 621 LVELQ--PDHDGFHVLLS 636
           ++     PD   F  +LS
Sbjct: 352 MISSDELPDGAAFVSVLS 369



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 201/444 (45%), Gaps = 74/444 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N  +R   ++   Q+A+ LY  ML +    + +T+P   ++ A       G  +H HV+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEA 216
           K G + + +V  +LI+MY  C  +++ARK+FDE+       V +N+++AGY       +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 217 KFIYNKMPERNIIAS---------------------------------------NSMIVL 237
             ++ +M +  +  +                                       N ++ +
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM 203

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + R G+V  A +LF  MP+K L++W+A+IS Y QN +    L L+  M    ++ D V +
Sbjct: 204 YVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTL 263

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           V VLS+CA+L    AG  V       G      L+NALI+MY+ CG +  A  +FD    
Sbjct: 264 VGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            ++ISW ++I+GY   G  E A  LFD MI  D +                         
Sbjct: 324 KNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL------------------------- 358

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
                 PD A  VSV+SAC+H    ++G  +  A  R  GL+      + ++D+  + G 
Sbjct: 359 ------PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 477 VDNALEVFHG-TEEKGVSSWNALI 499
           ++ A ++    + E   + W AL+
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALL 436



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 41/331 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y   +    A+ L++ M    V V+  T   L    A  + +  G  +H   +
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G D D+ V N L+ MY  CG +  ARKLFD  P   L++WN++++GY           
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD 246

Query: 219 IYNKMPERNIIA---------------------------------------SNSMIVLFG 239
           +Y KM    I+                                         N++I ++ 
Sbjct: 247 LYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYA 306

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           R GN+ +A  +F  M +K+++SW+A+I+ Y  +   E A+ LF  MI    + D    VS
Sbjct: 307 RCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVS 366

Query: 300 VLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHN 357
           VLSAC++  + + G     A+    G++      + ++ +    G +  A KL  +    
Sbjct: 367 VLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVE 426

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIE 388
            D   W +++       +VE A   F+ +IE
Sbjct: 427 PDGAVWGALLGACKIHRNVELAELAFEKVIE 457



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           ++    SW+  +   A+   F E L+L+ +M   G  P+  T      +C  L     G 
Sbjct: 17  LQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGS 76

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF---HGTEEKGVSSWNALIIGFA 503
            +H ++ K G +    + T+LI MY K   + +A +VF   H +    V  +NALI G++
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAV-CYNALIAGYS 135

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR---HMGLVDEGHRHFNSMIQEHRLE 560
           +N     ++ +F +M+K GV+ N +T +G++  C    H+G     H    +      L+
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLH----ACSVRFGLD 191

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +     C++ +  R G +  A +L + MP    + TW A++    ++G
Sbjct: 192 GDLSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISGYAQNG 239



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 41/248 (16%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           + ++ K+F  +       +N M+  Y Q  +    + LY+ M    +  D  T   +  +
Sbjct: 210 VDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSS 269

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   +   G+ +   +  +GF  + ++ N LINMYA CG+L  AR +FD     +++SW
Sbjct: 270 CAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISW 329

Query: 201 NSILAGY----------------VNADNVEE-AKFI-------YNKMPERNIIASNSM-- 234
            +I+AGY                +++D + + A F+       +  + E+ +    +M  
Sbjct: 330 TAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMER 389

Query: 235 --------------IVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEAL 279
                         + L GR G + EA +L   M  + D   W AL+   + +   E A 
Sbjct: 390 DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAE 449

Query: 280 VLFMNMID 287
           + F  +I+
Sbjct: 450 LAFEKVIE 457


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/718 (33%), Positives = 385/718 (53%), Gaps = 36/718 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +  ++  Y Q N  ++A  L+  M       D  T+  L        
Sbjct: 99  KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 158

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
              +   +   ++K G+DS + V NTL++ Y     L  A +LF E P +D  ++ ++L 
Sbjct: 159 MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLC 218

Query: 206 GYVNADNVEEAKFIYNKMPERNII----ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
             +  D++   + I++ + + N +     SN+++  + +  +V +A +LF EMP++D VS
Sbjct: 219 ANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVS 278

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           ++ +IS Y  +  ++ A  LF  +        +    ++LS  +N    + G  +HA  +
Sbjct: 279 YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI 338

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
                                  +TTA+         +++  NS++  Y KCG  E+A  
Sbjct: 339 -----------------------VTTADS--------EILVGNSLVDMYAKCGKFEEAEM 367

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +F  +  +  V W+ MIS Y Q   + E L LF +M+   +  D+AT  S++ A   + +
Sbjct: 368 IFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 427

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L  GK +H++I K+G   N   G+ L+D+Y K G + +A++ F    ++ + SWNA+I  
Sbjct: 428 LSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISA 487

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +A NG A+ +L+ F EM  SG+ P+ ++F+GVL AC H GLV+EG  HFNSM Q ++L+P
Sbjct: 488 YAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDP 547

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HY  +VD+L R+G   EAE+L+  MP+ PD   W ++L AC+ H + E+  R   +L
Sbjct: 548 RREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQL 607

Query: 622 VELQPDHDGF-HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
             ++   D   +V +SNI+A+ G+W++V +V   M  RGV K+P  S +E     H F A
Sbjct: 608 FNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSA 667

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            DR HPQI EI   +D + K ++  GY PDT     + D++ K  +L  HSE+LAIAF L
Sbjct: 668 NDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFAL 727

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+    +PI +MKNLR C DCH A K IS+   REI VRD  RFHHF+ G CSC DFW
Sbjct: 728 ISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/535 (25%), Positives = 237/535 (44%), Gaps = 72/535 (13%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           Q+  LRL+V     I   ++K GFD D   +N  +  +   G+LS AR+LF++ P  + V
Sbjct: 22  QSPKLRLNVVNN--IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTV 79

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           S N +++GYV + N+ EA+ +++ M ER                                
Sbjct: 80  STNMMISGYVKSGNLGEARKLFDGMVERTA------------------------------ 109

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V+W+ LI  Y Q   ++EA  LF+ M       D V  V++LS C    +    T V  
Sbjct: 110 -VTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 168

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS---------------- 362
             +K+G +  + + N L+  Y     +  A +LF     +D  +                
Sbjct: 169 QIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVL 228

Query: 363 --------------WNSMISG-----YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
                         WN  +S      Y K  SV  AR LFD M E+D VS++ +ISGYA 
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
             +      LF E+Q       +    +++S  ++ +  + G+ IHA           ++
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 348

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           G +L+DMY K G  + A  +F     +    W A+I  +   G  ++ L++F++M+++ V
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             ++ TF  +L A   +  +  G +  +S I +     N      ++D+  + G +K+A 
Sbjct: 409 IADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLS 636
           +  + MP   ++ +W A++ A  ++G+ E   +  +++V   LQPD   F  +LS
Sbjct: 468 QTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLS 521



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 24/384 (6%)

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + S+ S    L VV    ++ A  VK G +   +  N  +  +   GE++ A +LF+   
Sbjct: 18  LASLQSPKLRLNVV---NNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMP 74

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
           + + +S N MISGY+K G++ +AR LFD M+E+  V+W+ +I GY+Q +QF E   LF++
Sbjct: 75  HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQ 134

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ  G  PD  T V+++S C      +Q   +   I K G     I+G TL+D Y K   
Sbjct: 135 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL--EMFSEMKKSGVTPNEITFVGVL 534
           +D A ++F    E  + S+    +  A  GL D  L  ++ S + K+    N      +L
Sbjct: 195 LDLACQLFKEMPE--IDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALL 252

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP- 593
                   V +  + F+ M      E +   Y  ++      G  K A +L   +  +  
Sbjct: 253 DFYSKHDSVIDARKLFDEMP-----EQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 307

Query: 594 --DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN----IHASKGRWDD 647
                 +  +L       D EMG ++  + +    D +   +L+ N    ++A  G++++
Sbjct: 308 DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSE---ILVGNSLVDMYAKCGKFEE 364

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEA 671
              +   +  R  V  P  +MI A
Sbjct: 365 AEMIFTNLTHRSAV--PWTAMISA 386


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 351/583 (60%), Gaps = 37/583 (6%)

Query: 216 AKFIYNKMPERNIIASNSMIVLF---GRKGNVAEACRLFKEMPKKDLVSWSALI-SCYEQ 271
           A+ + + MP  +I      I+ F      G++  A +LF ++ + ++ SW+++I  C + 
Sbjct: 78  ARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQS 137

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVS-VLSACANLTVVKAGTSVHALAVKIGIECYIN 330
               +E ++LF  M+           ++ VL AC+ ++ ++ G  VHA  +K G      
Sbjct: 138 QTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF 197

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           ++ AL++ Y+ C +I  A K+                               FD + +++
Sbjct: 198 VETALVNFYAKCEDIVLASKV-------------------------------FDEITDRN 226

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           +V+WSTMISGYA+    +E L LF +MQ  G+ PDE T+VSVISAC    ALD GKW+HA
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
           YI K  ++ +  L T L++MY K GC++ A EVF     K   +W+++I+G A+NGLA+ 
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 346

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE F  M+++ V PN +TF+GVL AC H GLV EG R+++SM+ E  + P+ + YGCMV
Sbjct: 347 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMV 405

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLL RA ++++A  L+E+MP+SP+   W  LL  CKK  + +  E V ++L+EL+P +  
Sbjct: 406 DLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAE 465

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            ++LLSN++AS  +W+ + +VR  M   G+  +PGCS IE +G++HEF+ GD +HP+  E
Sbjct: 466 NYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAME 525

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIR 750
           +  +L +++K++   G+ P   +V  ++  EEKE  L  HSE+LAIA+GL+    P  IR
Sbjct: 526 VREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIR 585

Query: 751 IMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           I+KNLR+C DCH   K IS  + REI+VRDR RFH F +GSCS
Sbjct: 586 IVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 208/434 (47%), Gaps = 48/434 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADT--FAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           ++KC+S +   QI ++++   +   +  F   ++I F   L P+ ++ Y+ K+F+ ++ P
Sbjct: 64  IRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCA-LSPYGDIDYARKLFSQIQRP 122

Query: 95  NGFIFNTMMRAYIQRNVP-QQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKL 152
           N F +N+M+R   Q   P ++ + L++ M+       N +T   + +A ++  ++ EG+ 
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H +VLK+GF S  +V   L+N YA C D+  A K+FDE    +LV+W+++++GY     
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 213 VEEA---------------------------------------KFIYNKMPERNIIASNS 233
           V EA                                        +I  ++ E ++  S +
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 302

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ ++ + G +  A  +F  MP KD  +WS++I     N + E+AL  F  M + +V  +
Sbjct: 303 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 362

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            V  + VLSACA+  +V  G    +  ++ GI   + L   ++ +      +  A  L +
Sbjct: 363 HVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVE 422

Query: 354 AGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSE 409
               + + + W +++ G  K  +++K+  +   ++E    +  ++  + + YA   Q+ +
Sbjct: 423 TMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEK 482

Query: 410 TLSLFMEMQHHGIR 423
              +  +M+  GI+
Sbjct: 483 MSQVRKKMKGMGIK 496


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/775 (33%), Positives = 399/775 (51%), Gaps = 72/775 (9%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PT  L+ L T   K     +  ++  +M    L       S L    + L+P +E     
Sbjct: 47  PTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAH--SRLVPDME----- 99

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTY-PLLAQASAL 143
           ++FA +   +   +N ++  +     P +++ LY+ +L   +V     T   ++  ASAL
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
                 G  +H  VL+ GF +  +V + L++MYA  G +  AR++F E     +V +N++
Sbjct: 160 SDRAL-GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           + G +    +E+A                        KG       LF+ M  +D ++W+
Sbjct: 219 ITGLLRCKMIEDA------------------------KG-------LFQLMVDRDSITWT 247

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +++   QN +  EAL +F  M    V +D+    S+L+AC  L   + G  +HA   + 
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT 307

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
             E  + + +AL+ MYS                               KC S+  A A+F
Sbjct: 308 WYEDNVFVGSALVDMYS-------------------------------KCRSIRLAEAVF 336

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
             M  ++++SW+ MI GY Q+    E +  F EMQ  GI+PD+ TL SVIS+C +L +L+
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLE 396

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           +G   H     +GL     +   L+ +Y K G +++A  +F         SW AL+ G+A
Sbjct: 397 EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYA 456

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
             G A +++++F +M  +G+ P+ +TF+GVL AC   GLV++G  +F+SM ++H + P  
Sbjct: 457 QFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPID 516

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
            HY CM+DL  R+G  KEAEE I+ MP SPD   W  LL +C+  G+ E+G+     L+E
Sbjct: 517 DHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLE 576

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
             P +   +VLL ++HA+KG+W +V  +R  M  R V K PGCS I+    +H F A D+
Sbjct: 577 TDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 636

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HP  + I   L+ +  K+  EGY PD   V  D+   +K   +  HSEKLAIAFGLI +
Sbjct: 637 SHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFV 696

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               PIRI+KNLR+C DCH A KFIS+   R+I+VRD  RFH F  G+CSC DFW
Sbjct: 697 PQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 85/762 (11%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  LE  N + +  ++ A+      ++ +   + M  + V  D  T+     +     S+
Sbjct: 102 FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESL 161

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWN----- 201
            +G  IH  V+ +  + D  V+N L+NMY  CG LS A+++F +     +++SW+     
Sbjct: 162 RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGA 221

Query: 202 ------------------------------SILAGYVNADNVEEAKFIYNKMP----ERN 227
                                         +IL+   +   V++ + I++ +     E  
Sbjct: 222 HALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESE 281

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNM 285
           ++ +N+++ ++GR G V EA ++F  M +  +D+VSW+ ++S Y  N+  ++A+ L+  M
Sbjct: 282 LLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM 341

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
              ++  D+V  VS+LSAC++   V  G  +H   V   +E  + + NAL+ MY+     
Sbjct: 342 ---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA----- 393

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     KCGS  +ARA+FD M ++ ++SW+T+IS Y +  
Sbjct: 394 --------------------------KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRR 427

Query: 406 QFSETLSLF---MEMQHHG----IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             +E   LF   +E++ +G    ++PD    V++++AC  + AL+QGK +       GL 
Sbjct: 428 LVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLS 487

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
            +  +GT ++++Y K G ++    +F G      V  WNA+I  +A  G + ++L++F  
Sbjct: 488 SDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWR 547

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR-LEPNSKHYGCMVDLLGRA 576
           M+  GV P+  +FV +L AC H GL D+G  +F SM  E+R +    +H+GC+ DLLGR 
Sbjct: 548 MEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRG 607

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G LKEAEE +E +P+ PD   W +LL AC+ H D +  + V  KL+ L+P     +V LS
Sbjct: 608 GRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALS 667

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A   +W  V +VR  M  +GV K  G S IE    +H+F  GD  HP+  EI   L 
Sbjct: 668 NIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELA 727

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           ++  ++K  GY PDT  V   +D++EKE  LF HSE+LAIA GLI+     P+R+ KNLR
Sbjct: 728 KLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLR 787

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C+DCHTA K IS+   R+IVVRD  RFH FK G CSC D+W
Sbjct: 788 VCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 177/387 (45%), Gaps = 38/387 (9%)

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +N +P  N+I  N ++ ++    +  +A   F  + +++L SW+ L++ +  +   +E L
Sbjct: 72  HNLLPG-NLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETL 130

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
                M    V  D V  ++ L +C +   ++ G  +H + V   +E    + NAL++MY
Sbjct: 131 RALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMY 190

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
             CG ++ A+++F                       +E+ R         +V+SWS M  
Sbjct: 191 KKCGSLSHAKRVF---------------------AKMERTR---------NVISWSIMAG 220

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            +A H    E L  F  M   GI+  ++ +V+++SAC+    +  G+ IH+ I  +G + 
Sbjct: 221 AHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFES 280

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSE 517
             ++   ++ MY + G V+ A +VF   +E  + V SWN ++  +  N     +++++  
Sbjct: 281 ELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQR 340

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
           M+   +  +++T+V +L AC     V  G R  +  I    LE N      +V +  + G
Sbjct: 341 MQ---LRADKVTYVSLLSACSSAEDVGLG-RVLHKQIVNDELEKNVIVGNALVSMYAKCG 396

Query: 578 MLKEAEELIESMPMSPDVATWGALLGA 604
              EA  + + M     + +W  ++ A
Sbjct: 397 SHTEARAVFDKMEQR-SIISWTTIISA 422



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 147/327 (44%), Gaps = 39/327 (11%)

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           +++    V  +      +L  CA    +  G  +H+LAVK                    
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVK-------------------- 71

Query: 343 GEITTAEKLFDAGHNL---DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                        HNL   +LI  N ++S Y  C S   A+A FDA+ ++++ SW+ +++
Sbjct: 72  -------------HNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVA 118

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            +A   Q  ETL     M+  G+RPD  T ++ + +C    +L  G  IH  +  + L+I
Sbjct: 119 AFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEI 178

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           +  +   L++MY K G + +A  VF   E  + V SW+ +    A++G   ++L  F  M
Sbjct: 179 DPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFM 238

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
              G+   +   V +L AC    LV +G R  +S I     E        ++ + GR G 
Sbjct: 239 LLLGIKATKSAMVTILSACSSPALVQDG-RLIHSCIALSGFESELLVANAVMTMYGRCGA 297

Query: 579 LKEAEELIESMPMS-PDVATWGALLGA 604
           ++EA ++ ++M  +  DV +W  +L A
Sbjct: 298 VEEARKVFDAMDEALRDVVSWNIMLSA 324



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGTT 466
           S+  S  ++++   +R + AT   ++  C    AL +G+ IH+  ++ N L  N ILG  
Sbjct: 25  SDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNH 84

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           ++ MY       +A   F   E++ + SW  L+  FA++G + ++L     M++ GV P+
Sbjct: 85  IVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPD 144

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TF+  LG+C     + +G R  + M+ + RLE + K    ++++  + G L  A+ + 
Sbjct: 145 AVTFITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVF 203

Query: 587 ESMPMSPDVATWGALLGACKKHGD 610
             M  + +V +W  + GA   HG+
Sbjct: 204 AKMERTRNVISWSIMAGAHALHGN 227


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/684 (35%), Positives = 371/684 (54%), Gaps = 74/684 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H H+ K    +D +++N L+N+YA  G++S ARKLF                       
Sbjct: 48  MHLHLFKP---NDTFIHNRLLNLYAKSGEISHARKLF----------------------- 81

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                   ++M +R+  + N+M+ L+ + G V +   +F  MP +D VS++ +IS +  N
Sbjct: 82  --------DEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGN 133

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
                AL +F+ M    +   E   VSVL+AC  L  ++ G  +H   +   +   + + 
Sbjct: 134 GRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVC 193

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK-------------------- 372
           NAL  +Y+ CGEI  A +LFD     ++++WN MISGYLK                    
Sbjct: 194 NALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLK 253

Query: 373 ---------------CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                           G +++AR +F  + EKD V W+ MI G AQ+ +  + L LF EM
Sbjct: 254 PDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEM 313

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
                RPD  T+ SV+S+C  L +L  G+ +H      G+  + ++ + L+DMY K G  
Sbjct: 314 LLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVT 373

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
            +A  +F   + + V SWN++I G+A+NG   ++L ++  M +  + P+ +TFVGVL AC
Sbjct: 374 RDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSAC 433

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
            H GLV+EG  +F SM  +H LEP   HY CMV+L GR+G + +A +LI SM   P+   
Sbjct: 434 VHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLI 493

Query: 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           W  +L  C   GD + GE   R L+EL P +   +++LSN++A++GRW DV  +R +M  
Sbjct: 494 WTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKS 553

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           + V K    S IE +  +H+F+A DRTHP    I   L+ + +KL+  G++P+T  V  D
Sbjct: 554 KHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHD 613

Query: 718 IDQEEKETTLFRHSEKLAIAFGLITISPPN---PIRIMKNLRICNDCHTAAKFISRAFDR 774
             ++EK  ++  HSEKLA+A+GL  I  P+   PIRI+KN+R C DCH   KF+S    R
Sbjct: 614 FGEDEKLESINYHSEKLALAYGL--IKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRR 671

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
            +++RD +RFHHF  G CSC D+W
Sbjct: 672 PVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 204/426 (47%), Gaps = 37/426 (8%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  + S +   +NT++  +        A+ ++  M    +    YT+  +  A    L 
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK IH  ++      +V+V N L ++YA CG++  AR+LFD   + ++V+WN +++G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 207 YVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
           Y+     E+   ++++M   N+    + ++S++  + + G + EA ++F E+ +KD V W
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + +I    QN   E+AL+LF  M+      D   + SV+S+CA L  +  G  VH  A  
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
           +G+   + + +AL+ MY  CG    A  +F      +++SWNSMI GY            
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGY------------ 398

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL 442
                              A + Q  E LSL+  M    ++PD  T V V+SAC H   +
Sbjct: 399 -------------------ALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 443 DQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALII 500
           ++GK +  +   ++GL+        +++++ + G +D A+++    ++E     W  ++ 
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499

Query: 501 GFAMNG 506
              M G
Sbjct: 500 VCVMKG 505



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 50/336 (14%)

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-----NLDLIS 362
           T+   G + H    ++ +EC+               ++  A++L    H       D   
Sbjct: 13  TLYTNGPASHECYTRLALECF------------RASDVDQAKRLKSHMHLHLFKPNDTFI 60

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI------------------------ 398
            N +++ Y K G +  AR LFD M ++D  SW+ M+                        
Sbjct: 61  HNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDS 120

Query: 399 -------SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                  SG+A + +    L +F+ MQ  G++P E T VSV++ACT L+ L +GK IH  
Sbjct: 121 VSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGR 180

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           I    L  N  +   L D+Y + G +D A  +F     + V +WN +I G+  N   +K 
Sbjct: 181 IIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKC 240

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           +++F EM+ S + P+++T   VLGA    G +DE  + F  + ++  +       GC  +
Sbjct: 241 IDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQN 300

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
                 +L  +E L+E+    PD  T  +++ +C K
Sbjct: 301 GKEEDALLLFSEMLLEN--ARPDGYTISSVVSSCAK 334



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 9/209 (4%)

Query: 23  IFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMS 82
           + +  +  +++ +   K +  ++   +  +M ++ L  D   AS +      L  +I+  
Sbjct: 217 VIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSV------LGAYIQAG 270

Query: 83  Y---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           Y   + K+F  +   +   +  M+    Q    + A+ L+  ML  N   D YT   +  
Sbjct: 271 YIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVS 330

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           + A   S++ G+++H      G + D+ V++ L++MY  CG    A  +F      ++VS
Sbjct: 331 SCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVS 390

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNI 228
           WNS++ GY       EA  +Y  M E N+
Sbjct: 391 WNSMIGGYALNGQDLEALSLYENMLEENL 419


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 377/662 (56%), Gaps = 45/662 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----------- 228
           GDL  A  LFD+ P  DL +W  +++G+      ++A  IY+ +  RN+           
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 229 ----------------------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                       +  N++I +FG+   V  A  +F +M  KD+V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++  CY    M  + ++LF  M  + +  + + V S+L ACA+   +K G  VH   
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFI 202

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           ++  +E  + + +AL++MY+S   +  A  +FD+ ++ D++SWN M++ Y      E+  
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGL 262

Query: 381 ALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
            LF  M    I+ +  SW+  ISG  Q+ Q    L +  +MQ  GI+P+  T+VS +  C
Sbjct: 263 GLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGC 322

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
           T+L +L  GK IH Y+ ++    +  + T L+ +Y K G ++ +  VF+    K V +WN
Sbjct: 323 TNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWN 382

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
            +I+  +M+G   +SL +F++M  SGV PN +TF+GVL  C H  L DEG   FNSM  E
Sbjct: 383 TMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSE 442

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           H + P++ HY CMVD+L RAG L+EA + I  MP+ P  A WGALLGAC+ + + E+G  
Sbjct: 443 HSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTL 502

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              +L E++PD+ G +VLLSNI  +  +W +  E+R MM  +G+ K PG S ++    ++
Sbjct: 503 AASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVY 562

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
            F+ GD+++ Q + I   LDE+ +K++L+GY P+T  V  ++DQE++E TL  HSE+LA+
Sbjct: 563 SFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAV 622

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           AFG++  S    +R+ KNLRIC DCH A K I++    +I+VRD  RFHHF+ G C+C D
Sbjct: 623 AFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCND 682

Query: 797 FW 798
           FW
Sbjct: 683 FW 684



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 183/449 (40%), Gaps = 103/449 (22%)

Query: 69  IKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
           IK     L   ++  +  +F  +  P+   +  ++  + Q   P++AI +Y  +L+ NV 
Sbjct: 15  IKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVR 74

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            D +    +A+A A    +   K IHD  ++ GF+ D+ + N LI+M+  C  ++ AR +
Sbjct: 75  PDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCV 134

Query: 189 FDESPVLDLVSWNSILAGYVN---------------------------------ADNVEE 215
           FD+  V D+VSW S+   YVN                                 AD ++ 
Sbjct: 135 FDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL 194

Query: 216 AK----FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
            +    FI     E N+  S++++ ++     + +A  +F  M  +D+VSW+ +++ Y  
Sbjct: 195 GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFL 254

Query: 272 NEMYEEALVLF-----------------------------------MNMIDHRVMVDEVV 296
           N+ YE  L LF                                     M D  +  + + 
Sbjct: 255 NKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRIT 314

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           +VS L  C NL  ++ G  +H    +      + +  AL+ +Y+ CG++  +  +F+   
Sbjct: 315 IVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP 374

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
             D+++WN                               TMI   + H +  E+L LF +
Sbjct: 375 RKDVVAWN-------------------------------TMIMANSMHGKGGESLILFNK 403

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQG 445
           M   G+ P+  T + V+S C+H    D+G
Sbjct: 404 MLDSGVEPNSVTFIGVLSGCSHSQLADEG 432



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 6/250 (2%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +I   L  G +++A  LFD + E D+ +W+ +ISG+ QH    + + ++  +    +RPD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           +  L+SV  AC     L   K IH    + G   + +LG  LIDM+ K   V+ A  VF 
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR-HMGLVD 544
               K V SW ++   +   G+  + + +F EM  +G+  N +T   +L AC  ++ L  
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGR 196

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           E H      I  + +E N      +V++   +  LK+A  + +SM    D+ +W  +L A
Sbjct: 197 EVH----GFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTA 251

Query: 605 CKKHGDHEMG 614
              + ++E G
Sbjct: 252 YFLNKEYERG 261


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/756 (33%), Positives = 392/756 (51%), Gaps = 105/756 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N   F T+++ Y +     +AI L+  +      ++ + +  + +   L +
Sbjct: 94  KLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILK---LLV 150

Query: 146 SVFEGKL---IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
           S+  G+L   IH  + K G +S+ +V   LI+ Y+VCG +  AR++FD     D+VSW  
Sbjct: 151 SMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTG 210

Query: 203 ILAGYVNADNVEEAKFIYNKMP-------------------------------------- 224
           ++  +   D  +EA  ++++M                                       
Sbjct: 211 MVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSR 270

Query: 225 -ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
            E ++    +++ L+ + G++ +A   F+E+PKKD++ WS +I+ Y Q++  +EA+ +F 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V+ ++    SVL ACA +  +  G  +H   +KIG+   + + NAL+ +Y+   
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA--- 387

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF-DAMIEKDVVSWSTMISGYA 402
                                       KCG +E +  LF ++    DV  W+T+I G+ 
Sbjct: 388 ----------------------------KCGRMENSMXLFAESPHRNDVTPWNTVIVGHV 419

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q     + L LF+ M  + ++  E T  S + AC  L AL+ G  IH+   K     + +
Sbjct: 420 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIV 479

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           +   LIDMY K G + +A  VF    ++   SWNA+I G++M+GLA              
Sbjct: 480 VTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLA-------------- 525

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
                         C + GL+D+G  +F SMIQ+H +EP  +HY CMV LLGR G L +A
Sbjct: 526 --------------CANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA 571

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            +LI+ +P  P V  W ALLGAC  H D E+G    + ++E++P     HVLLSN++A+ 
Sbjct: 572 VKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATA 631

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
            RWD+V  VR  M R+GV K PG S IE+ G +H F  GD +HP++  I+ ML+ +  K 
Sbjct: 632 KRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKT 691

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY P+   V  D++ EEKE  L+ HSE+LA++FG+I     +PIRIMKNLRIC DCH
Sbjct: 692 KKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCH 751

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            A K IS+   REIVVRD +RFHHF+ G CSC D+W
Sbjct: 752 AAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 220/501 (43%), Gaps = 73/501 (14%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            GK +H  +LK G   D++  N L+NMY     L  A KLFDE P  + +S+ +++ GY 
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 209 NADNVEEA---------------KFIYNKM------------------------PERNII 229
            +    EA                F++  +                         E N  
Sbjct: 116 ESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAF 175

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              ++I  +   G V  A  +F  +  KD+VSW+ +++C+ +N+ ++EAL LF  M    
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              +     SV  AC  L     G SVH  A+K   E  + +  AL+ +Y+  G+I  A 
Sbjct: 236 FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
             F+     D+I W                               S MI+ YAQ DQ  E
Sbjct: 296 XAFEEIPKKDVIPW-------------------------------SFMIARYAQSDQSKE 324

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            + +F +M+   + P++ T  SV+ AC  +  L+ G  IH ++ K GL  +  +   L+D
Sbjct: 325 AVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD 384

Query: 470 MYMKLGCVDNALEVFHGTEEKG-VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           +Y K G ++N++ +F  +  +  V+ WN +I+G    G  +K+L +F  M +  V   E+
Sbjct: 385 VYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEV 444

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           T+   L AC  +  ++ G    +S+  +   + +      ++D+  + G +K+A  + + 
Sbjct: 445 TYSSALRACASLAALEPG-LQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDL 503

Query: 589 MPMSPDVATWGALLGACKKHG 609
           M    +V +W A++     HG
Sbjct: 504 MNKQDEV-SWNAMISGYSMHG 523



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 207/431 (48%), Gaps = 36/431 (8%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEM 254
           ++ + L   +  D     K ++ ++ +R    ++ A N ++ ++ +   + +A +LF EM
Sbjct: 40  AYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM 99

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
           P+++ +S+  LI  Y ++  + EA+ LF+ +      ++  V  ++L    ++   + G 
Sbjct: 100 PERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGW 159

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
            +HA   K+G E    +  ALI  YS CG +  A ++FD     D++SW           
Sbjct: 160 GIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSW----------- 208

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                               + M++ +A++D F E L LF +M+  G +P+  T  SV  
Sbjct: 209 --------------------TGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFK 248

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L A D GK +H    K+  +++  +G  L+D+Y K G +D+A   F    +K V  
Sbjct: 249 ACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIP 308

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W+ +I  +A +  + +++EMF +M+++ V PN+ TF  VL AC  M  ++ G++  +  +
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQ-IHCHV 367

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
            +  L  +      ++D+  + G ++ +  L    P   DV  W  ++    + GD E  
Sbjct: 368 IKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKA 427

Query: 615 ERVGRKLVELQ 625
            R+   ++E +
Sbjct: 428 LRLFLNMLEYR 438


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/662 (36%), Positives = 367/662 (55%), Gaps = 79/662 (11%)

Query: 141 SALRLSVFEG-KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP------ 193
           S LR     G +L+H  +L   F  ++++ N LI++Y  C  L  ARKLFD  P      
Sbjct: 24  SCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFT 83

Query: 194 ------VL-------------------DLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
                 VL                   D  SWNS+++G+   D  EE+   + KM   + 
Sbjct: 84  WNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDF 143

Query: 229 IAS---------------------------------------NSMIVLFGRKGNVAEACR 249
           + +                                       +++I ++ + G+VA A  
Sbjct: 144 LLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE 203

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F  M +++LV+W++LI+CYEQN    EAL +F+ M+D  +  DEV + SV+SACA+L  
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA 263

Query: 310 VKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
           +K G  +HA  VK       + L NAL+ MY+ C ++  A ++FD     +++S  SM+S
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVS 323

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           GY +  SV+ AR +F  M +++VVSW+ +I+GY Q+ +  E L LF  ++   I P   T
Sbjct: 324 GYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYT 383

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINS------ILGTTLIDMYMKLGCVDNALE 482
             +++SAC +L  L  G+  H ++ K G +  S       +G +LIDMYMK G +++   
Sbjct: 384 FGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSR 443

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   +E+   SWNA+I+G+A NG   ++L++F +M   G  P+ +T +GVL AC H GL
Sbjct: 444 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 503

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           V+EG  +F SM +EH L P   HY CMVDLLGRAG L EA+ LIE+MP++PD   WG+LL
Sbjct: 504 VEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 562

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
            ACK HG+ EMG+    KL+E+ P + G +VLLSN++A  GRW DV+ VR +M ++GV K
Sbjct: 563 AACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 622

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PGCS IE    +H FL  D++HP   +I ++L  + +++K  GY PD  +     +Q +
Sbjct: 623 QPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDANDFEAYDEQSK 682

Query: 723 KE 724
            E
Sbjct: 683 SE 684



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 181/369 (49%), Gaps = 32/369 (8%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L +C      +    VHA  +       I +QN LI +Y  C  +  A KLFD     +
Sbjct: 21  LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRN 80

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
             +WNS+IS   K G +++A  LF +M E D  SW++M+SG+AQHD+F E+L  F++M  
Sbjct: 81  TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR 140

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
                +E +  S +SAC  L+ L+ G  +HA + K+    +  +G+ LIDMY K G V  
Sbjct: 141 EDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVAC 200

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A EVF G  E+ + +WN+LI  +  NG A ++LE+F  M  SG+ P+E+T   V+ AC  
Sbjct: 201 AEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACAS 260

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-------- 591
           +  + EG +    +++ ++   +      +VD+  +   + EA  + + M +        
Sbjct: 261 LCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETS 320

Query: 592 ----------------------SPDVATWGALLGACKKHGDHEMGERVGR--KLVELQPD 627
                                   +V +W AL+    ++G++E   R+ R  K   + P 
Sbjct: 321 MVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPT 380

Query: 628 HDGFHVLLS 636
           H  F  LLS
Sbjct: 381 HYTFGNLLS 389



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 191/402 (47%), Gaps = 69/402 (17%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F+ +   N   +N+++  Y Q     +A+ ++  M+++ +  D  T   +  A A   
Sbjct: 203 EVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLC 262

Query: 146 SVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           ++ EG  IH  V+K   F  D+ + N L++MYA C  ++ AR++FD   + ++VS  S++
Sbjct: 263 ALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMV 322

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +GY  A +V+ A+F+++KM +RN+++ N++I  + + G   EA RLF+ + ++ +  W  
Sbjct: 323 SGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI--WPT 380

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
             +              F N+               LSACANL  +  G   H   +K G
Sbjct: 381 HYT--------------FGNL---------------LSACANLADLLLGRQAHTHVLKQG 411

Query: 325 IECY------INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
            E        I + N+LI MY  CG I    ++F+     D +SWN++I G         
Sbjct: 412 FEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVG--------- 462

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                                 YAQ+   +E L +F +M   G +PD  T++ V+ AC+H
Sbjct: 463 ----------------------YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSH 500

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
              +++G+     + ++GL       T ++D+  + GC++ A
Sbjct: 501 AGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEA 542



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 52/255 (20%)

Query: 417 MQHHGI-----RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           M  HG+      P+ +    ++ +C    +    + +HA I      +   +   LID+Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 472 MKLGCVDNALEVFHGTEEKGV-------------------------------SSWNALII 500
            K  C+D+A ++F    ++                                  SWN+++ 
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           GFA +   ++SLE F +M +     NE +F   L AC   GL+D      N   Q H L 
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSAC--AGLMD-----LNMGTQVHALV 173

Query: 561 PNSKHY------GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             S++         ++D+  + G +  AEE+   M +  ++ TW +L+   +++G     
Sbjct: 174 SKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQNGPASEA 232

Query: 615 ERVGRKLVE--LQPD 627
             V  ++++  L+PD
Sbjct: 233 LEVFVRMMDSGLEPD 247


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 273/825 (33%), Positives = 423/825 (51%), Gaps = 89/825 (10%)

Query: 16  SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTG--LIADTFAASRLIKFST 73
           S+ +A  + +P + L  L + L      +   QIL+  + +G   +    A S L+++++
Sbjct: 10  SAADAAALRRPYLRLVALSSTL------RHLDQILAVSLASGHYPLDPAPATSLLLRYAS 63

Query: 74  DLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ-QAICLYKLMLNNNVGVDNY 132
              P     +  ++F     P+ F+ N ++R     ++P  +   L+    + +      
Sbjct: 64  LRAP---TGHLLRLFRGFPRPDRFLRNALLR-----SLPSLRPRLLFPCPDSFSFAFAAT 115

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           +   L        S    + +H   + AG+ +D +V + L  +Y V   +  ARK+FD  
Sbjct: 116 SLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTV 175

Query: 193 PVLDLVSWNSILAGYVNADNVE-------------EAKFIYNKMPERNIIASNSM----- 234
           P  D V WN++LAG   ++ VE             +A  + + +P    +A  +M     
Sbjct: 176 PSPDTVLWNTLLAGLSGSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVH 235

Query: 235 ------------------IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                             I L+ + G+V  A  LF  M K DLV+++ALIS Y  N M  
Sbjct: 236 SFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVG 295

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
            ++ LF  ++   +  +   +V+++   +          +H   +K G            
Sbjct: 296 SSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG------------ 343

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
             +++   ++TA                 + + + +   +E AR  FD M EK + SW+ 
Sbjct: 344 --FTANSPVSTA-----------------ITTLHCRLNDMESARKAFDTMPEKTMESWNA 384

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MISGYAQ+      ++LF +M    +RP+  T+ S +SAC  L AL  GKW+H  I +  
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED 444

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L+ N  + T LIDMY K G +  A  +F+  + K V SWNA+I G+ ++G   ++L+++ 
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           +M  + + P   TF+ VL AC H GLV+EG + F SM  ++ + P  +H  CMVDLLGRA
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRA 564

Query: 577 GMLKEAEELIESMPMS---PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           G LKEA ELI   P S   P V  WGALLGAC  H D ++ +   +KL EL P++ G++V
Sbjct: 565 GQLKEAFELISEFPKSAVGPGV--WGALLGACMVHKDSDLAKLASQKLFELDPENSGYYV 622

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN+H SK ++ +   VR     R +VK PG ++IE     H F+AGDR HPQ   I +
Sbjct: 623 LLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYS 682

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            L+++  K+   GY P+T    +D+++EEKE  +  HSEKLAIAFGL++  P   IRI+K
Sbjct: 683 YLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIK 742

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH A KFIS+   R IVVRD  RFHHF+ G CSC D+W
Sbjct: 743 NLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 381/736 (51%), Gaps = 65/736 (8%)

Query: 90   FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
            FL SP  N   +  MMRA+        A+ L++ ML   V  D  T       + L L  
Sbjct: 311  FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV-----TTVLNLPG 365

Query: 148  FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
                 +H   +K G D+ V+V NTL++ Y   G L+AAR++F E    D V++N+++ G 
Sbjct: 366  CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGC 425

Query: 208  VNADNVEEA--------KFIYNKMPER---------------NIIASNSMIVLFGRKGNV 244
                   +A        +  Y++ P                 N+  +NS++  + +   +
Sbjct: 426  SKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCL 485

Query: 245  AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV--VSVLS 302
             +  RLF EMP++D VS++ +I+ Y  N+     L LF  M   ++  D  V+   ++LS
Sbjct: 486  DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM--QKLGFDRQVLPYATMLS 543

Query: 303  ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
               +L  V  G  +HA  V +G+     L NALI MYS                      
Sbjct: 544  VAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS---------------------- 581

Query: 363  WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
                     KCG ++ A++ F    EK  +SW+ +I+GY Q+ Q  E L LF +M+  G+
Sbjct: 582  ---------KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 632

Query: 423  RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
            RPD AT  S+I A + L  +  G+ +H+Y+ ++G K +   G+ L+DMY K GC+D AL 
Sbjct: 633  RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 692

Query: 483  VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
             F    E+   SWNA+I  +A  G A  +++MF  M   G  P+ +TF+ VL AC H GL
Sbjct: 693  TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 752

Query: 543  VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
             DE  ++F+ M  ++ + P  +HY C++D LGR G   + ++++  MP   D   W ++L
Sbjct: 753  ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 812

Query: 603  GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
             +C+ HG+ E+      KL  ++P     +V+LSNI+A  G+W+D   V+ +M  RGV K
Sbjct: 813  HSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRK 872

Query: 663  IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
              G S +E    I+ F + D T P I+EI + LD + K++  +GY PD       +D E 
Sbjct: 873  ESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHEL 932

Query: 723  KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
            K  +L  HSE+LAIAF L+      PIRIMKNL  C DCH   K IS+  +R+I+VRD  
Sbjct: 933  KLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSR 992

Query: 783  RFHHFKHGSCSCMDFW 798
            RFHHFK G CSC D+W
Sbjct: 993  RFHHFKDGVCSCGDYW 1008



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 220/495 (44%), Gaps = 87/495 (17%)

Query: 154 HDHVLKAGFDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           H H  +A FD     +++  N +++ Y+  GDL AA+ LF  SP  +  +W  ++  +  
Sbjct: 272 HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 331

Query: 210 ADNVEEAKFIYNKM------PER----------------------------NIIASNSMI 235
           A    +A  ++  M      P+R                            ++   N+++
Sbjct: 332 AGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLL 391

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
             + + G +A A R+F EM  KD V+++A++    +  ++ +AL LF  M          
Sbjct: 392 DAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM---------- 441

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
                          +AG S H L +         LQ      YS     +T+       
Sbjct: 442 --------------RRAGYSRHPLHL---------LQ------YSHSRSRSTSV------ 466

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
             L++   NS++  Y KC  ++  R LFD M E+D VS++ +I+ YA +   +  L LF 
Sbjct: 467 --LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFR 524

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ  G         +++S    L  +  GK IHA +   GL    +LG  LIDMY K G
Sbjct: 525 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG 584

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +D A   F    EK   SW ALI G+  NG  +++L++FS+M+++G+ P+  TF  ++ 
Sbjct: 585 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 644

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A   + ++  G R  +S +     + +      +VD+  + G L EA    + MP    +
Sbjct: 645 ASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 703

Query: 596 ATWGALLGACKKHGD 610
            +W A++ A   +G+
Sbjct: 704 -SWNAVISAYAHYGE 717



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 177/431 (41%), Gaps = 87/431 (20%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N MM    +  +  QA+ L+  M     G   +   LL  + +   
Sbjct: 405 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGYSRHPLHLLQYSHSRSR 462

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S          VL      +V+VNN+L++ Y+ C  L   R+LFDE P  D VS+N I+A
Sbjct: 463 ST--------SVL------NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 508

Query: 206 GYVNADNVEEAKFIYNKM----------------------PERNI--------------- 228
            Y           ++ +M                      P+ +I               
Sbjct: 509 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 568

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
             +  N++I ++ + G +  A   F    +K  +SW+ALI+ Y QN  +EEAL LF +M 
Sbjct: 569 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 628

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D     S++ A ++L ++  G  +H+  ++ G +  +   + L+ MY+ CG + 
Sbjct: 629 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 688

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A + FD     + ISWN++IS Y   G  + A  +F+ M+                   
Sbjct: 689 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML------------------- 729

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
                       H G  PD  T +SV++AC+H    D+  K+ H    +  +        
Sbjct: 730 ------------HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA 777

Query: 466 TLIDMYMKLGC 476
            +ID   ++GC
Sbjct: 778 CVIDTLGRVGC 788



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 9/224 (4%)

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           A   +  +K  +S  A A   G +      N  +    S G +  A  +FD   + ++ S
Sbjct: 231 AAPGVVPLKQPSSQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFS 290

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
            N ++S Y   G +  A+ LF +   ++  +W+ M+  +A   + S+ LSLF  M   G+
Sbjct: 291 LNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGV 350

Query: 423 RPDEATLVSVIS--ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            PD  T+ +V++   CT          +H +  K GL  +  +  TL+D Y K G +  A
Sbjct: 351 IPDRVTVTTVLNLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 403

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             VF    +K   ++NA+++G +  GL  ++L++F+ M+++G +
Sbjct: 404 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS 447


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/533 (41%), Positives = 321/533 (60%), Gaps = 25/533 (4%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +P+++  S++ L++    +   E A       I  R M                 
Sbjct: 111 RLFPRLPRRNPHSFTFLLASLSNHLDTEPAAA---GSIASRFM----------------- 150

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSMI 367
               GT VHALAVK G    + ++NA IH Y  CG++    K+FD    + D+++WN+++
Sbjct: 151 ----GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVL 206

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GY++ G V  AR +FD M  +D VSWST+I GY +  +    L +F  M   G++ +EA
Sbjct: 207 AGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEA 266

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +V+ +SA   L  L+QGK++H  +++ G+ ++  LG  LIDMY K G V  A EVF   
Sbjct: 267 AIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAM 326

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +WN++I G A +GL   ++++F +    G  P  ITFVGVL AC   GLVDEG 
Sbjct: 327 PRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGR 386

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R+F  M +++ +E   +HYGCMVDLL RAG+++EA ELIE M + PD   WG +L ACK+
Sbjct: 387 RYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKR 446

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG  ++G  VG KL+EL P HDG++VLL++I+A   +WD+V +VR +M  RG  K  G S
Sbjct: 447 HGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWS 506

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
           ++EA+GI+H+FL GD  H     I NML  + ++L   GY PD   V  DI  EEK   +
Sbjct: 507 LMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAI 566

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
             HSE+LAIA+G I +   +PIRI+KNL +C DCH  +K +++ F REIVVRD
Sbjct: 567 KVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRD 619



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHV 157
           ++T++  Y++   P+ A+ ++K M+   V   N    + A ++A +L + E GK +H+ V
Sbjct: 233 WSTVIGGYVKEGEPEVALGVFKNMVAQGVKA-NEAAIVTALSAAAQLGLLEQGKFVHEVV 291

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
            + G    V +   LI+MY+ CG ++AA+++FD  P  D+ +WNS++ G        +A 
Sbjct: 292 KRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAV 351

Query: 218 FIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMPKK-----DLVSWSALISC 268
            ++ K        ++   V       R G V E  R FK M +K     ++  +  ++  
Sbjct: 352 QLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL 411

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
             +  + +EA+ L   M   R+  D V+  ++LSAC    +V  G +V
Sbjct: 412 LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSACKRHGLVDLGITV 456


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/669 (36%), Positives = 368/669 (55%), Gaps = 89/669 (13%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES------------- 192
           SVFE +L+H  ++K  F S++++ N L+++Y  CG L  ARK+FD               
Sbjct: 34  SVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLG 93

Query: 193 ------------------PVLDLVSWNSILAGYVNADNVEEA-KFIYNKMPER------- 226
                             P  D  SWN++++G+   D  EEA +F+ +   E        
Sbjct: 94  ALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYS 153

Query: 227 -------------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                                          ++   ++++ ++ +   VA A R F +M 
Sbjct: 154 FGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMD 213

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +++VSW++LI+CYEQN    +AL +F+ M++  +  DE+ + SV SACA+L+ ++ G  
Sbjct: 214 VRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQ 273

Query: 316 VHALAVKIGIECYIN---LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           +HA  +K   + Y N   L NAL+ MY+ C  +  A  +FD     D++S  SM+SGY K
Sbjct: 274 IHARVMKH--DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAK 331

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
             SV+ AR +F  M+E++VVSW+ +I+GY Q+ +  E + LF+ ++   I P   T  ++
Sbjct: 332 ASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNL 391

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINS------ILGTTLIDMYMKLGCVDNALEVFHG 486
           ++AC +L  L  G+  H +I K+G    S       +G +LIDMYMK G V++   VF  
Sbjct: 392 LNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFER 451

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+   SWNA+I+G+A NG   ++LE+F EM  SG  P+ +T +GVL AC H GLV+EG
Sbjct: 452 MLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEG 511

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             +F SM  EH L P   HY CMVDLLGRAG L EA  LI++MPM PD   WG+LL ACK
Sbjct: 512 RCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACK 571

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG+  +G+ V  +L+E+ P + G +VLLSN++A  GRW DV+ VR  M + GV+K PGC
Sbjct: 572 VHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGC 631

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID---QEEK 723
           S I     +H F+  D+ HP   +I  +L  + +++K  GY P+      D D   +EE 
Sbjct: 632 SWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEA-----DDDEPYEEES 686

Query: 724 ETTLFRHSE 732
           ++ L  HSE
Sbjct: 687 DSELILHSE 695


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/572 (38%), Positives = 337/572 (58%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++I +N ++ +  +  ++  A  LF +M ++D VSWS +I  + +N  YE     F  +I
Sbjct: 34  DLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELI 93

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                 D   +  V+ AC +   +  G  +H+  +K G+                     
Sbjct: 94  RAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGL--------------------- 132

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                     +LD    ++++  Y KCG ++ A+ LFD M +KD+V+ + MI+GYA+  +
Sbjct: 133 ----------HLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGK 182

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +E+  LF +M+  G  PD+  +V++++AC  L A+++ + +H Y+      ++  LGT 
Sbjct: 183 PNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA 242

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           +IDMY K G +D++ E+F   E+K V SW+A+I  +  +G   ++LE+F  M  SG+ PN
Sbjct: 243 MIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPN 302

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITF+ +L AC H GLVD+G + F+ M   + + P+ KHY CMVDLLGRAG L +A  LI
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI 362

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E+M +  D   W A LGAC+ H   ++ E+  + L+ LQ  + G ++LLSNI+A+ GRW 
Sbjct: 363 ENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWK 422

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           DV ++R +M +R + KIPG + IE + II+ F AGD +H + NEI  ML  +++KL+  G
Sbjct: 423 DVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAG 482

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  D+D+E K   L  HSEKLAIAFGLI      PIRI KNLR+C DCH+  K
Sbjct: 483 YVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCK 542

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +S    R+I+VRD +RFHHFK G CSC D+W
Sbjct: 543 LVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 169/357 (47%), Gaps = 43/357 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L KC++  Q  Q+ +Q+  TG+I D   A++L+          ++  +  +F  +E  + 
Sbjct: 10  LFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCA---KHKDLVTAHLLFNKMEERDP 66

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             ++ M+  +++    ++    ++ ++      DN++ P + +A    + +  G+LIH  
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           VLK G   D +V +TL++MYA CG +  A++LFD  P  DLV+   ++AGY       E+
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNES 186

Query: 217 KFIYNKM------PER---------------------------------NIIASNSMIVL 237
             ++++M      P++                                 ++    +MI +
Sbjct: 187 WVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDM 246

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G++  +  +F  M +K+++SWSA+I  Y  +    EAL LF  M++  ++ + +  
Sbjct: 247 YAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITF 306

Query: 298 VSVLSACANLTVVKAGTSVHAL-AVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +S+L AC++  +V  G  + +L +V  G+   +     ++ +    G +  A +L +
Sbjct: 307 ISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 17/266 (6%)

Query: 49  ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK-IFAFLESPNGFIFNTMMRAYI 107
           I S ++  GL  D F  S L+    D+     M  + K +F  +   +      M+  Y 
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLV----DMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +   P ++  L+  M  +    D      +  A A   ++ + +L+HD+V    +  DV 
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE 238

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           +   +I+MYA CG + ++R++FD     +++SW++++  Y       EA  +++ M    
Sbjct: 239 LGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSG 298

Query: 228 IIASN----SMIVLFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCYEQNEMYEEA 278
           II +     S++      G V +  +LF  M      + D+  ++ ++    +    ++A
Sbjct: 299 IIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQA 358

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSAC 304
           L L  NM    V  DE +  + L AC
Sbjct: 359 LRLIENM---EVEKDEGIWCAFLGAC 381



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D    +S +  C ++  + Q   +HA +   G+  + I+   L+ M  K   +  A  +F
Sbjct: 2   DPDFFISTLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLF 58

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH-MGLV 543
           +  EE+   SW+ +I GF  NG  ++  + F E+ ++G  P+  +   V+ ACR  MGL+
Sbjct: 59  NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
               R  +S + ++ L  ++     +VD+  + GM+  A++L + MP
Sbjct: 119 --MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/686 (33%), Positives = 376/686 (54%), Gaps = 71/686 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  ++ +G   + +++N+L+N Y  CG L+ A+++F  +P  ++VSW  +++G    D 
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDC 102

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
             EA  ++ +M                                        E N+    +
Sbjct: 103 FVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ ++ + G +  A +LF+ M ++++VSW+A++S Y  +   EEA+ LF  M    ++VD
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              ++S++ A  ++  ++ GT +H   ++ G E   +++ AL+ +Y S            
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVS------------ 270

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
             HN                  V+ A  +F  M  KDV +W+ M++G++    +   +  
Sbjct: 271 --HN-----------------CVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKH 311

Query: 414 FMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           F +M     ++ D   L+ ++S+C+H  AL QG+ +HA   K     N  +G+ +IDMY 
Sbjct: 312 FNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYA 371

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
             G +++A   F+G  EK V  WNA+I G  MNG    ++++F +MK SG+ P+E TFV 
Sbjct: 372 NCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVS 431

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC H G+V EG + F  M++     PN +HY C++D+LGRAG L  A   I +MP  
Sbjct: 432 VLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQ 491

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PD   +  LLGAC+ HG+ ++G  + +K+ E++P+  G++VLLSN++A  G W+ V   R
Sbjct: 492 PDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTR 551

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
             +  + + K PG S IE N  I+ F+AG++ HPQ  +I+ +L  +  K+K  GY P+T 
Sbjct: 552 ASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTN 611

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            +  D+  + K+  L+ HSEK+AIAFGL+   P   IRI KNLR CNDCH+A+KF+S+ F
Sbjct: 612 VLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVF 671

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            R +V++D +RFH F+ G CSC D+W
Sbjct: 672 GRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 134/590 (22%), Positives = 255/590 (43%), Gaps = 124/590 (21%)

Query: 26  PTINLSIL-ETH---LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           PT  L  L ++H   L+K +  K   QI +Q+I +GL  +TF ++ L+          + 
Sbjct: 16  PTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADA 75

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT----YPLL 137
               +IF      N   +  ++    + +   +AI +++ M   N   +  T     P  
Sbjct: 76  K---QIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAF 132

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A    +R++    K +H   ++ GF+ +V+V   L++MY+  G +  AR+LF+     ++
Sbjct: 133 ANLGLIRIA----KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-----------------------NSM 234
           VSWN+I++GY +    EEA  ++N M  + ++                         +  
Sbjct: 189 VSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 235 IVLFGRKGN----------------VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           I+  G + +                V +A R+F EM  KD+ +W+ +++ +     ++ A
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 279 LVLFMNMID-HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           +  F  M+    + +D +V++ +LS+C++   ++ G  VHALA+K      I + +A+I 
Sbjct: 309 IKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MY++CG +  A++ F      D++ WN+MI+G                            
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAG--------------------------NG 402

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           ++GY      ++ + LF++M+  G+ PDE+T VSV+ AC+H   + +G  I  ++ K   
Sbjct: 403 MNGYG-----TDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 458 KINSILG-TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            I ++     +ID+  + G +D A                                  +S
Sbjct: 458 DIPNLQHYACVIDILGRAGQLDAA----------------------------------YS 483

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            +      P+   +  +LGACR  G +  GH     + +   +EPN   Y
Sbjct: 484 FINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFE---MEPNDAGY 530


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 353/605 (58%), Gaps = 38/605 (6%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEM 254
           ++ + L   +  D     K ++ ++ +R    ++ A N ++ ++ +   + +A +LF EM
Sbjct: 40  AYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM 99

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAG 313
           P+++ +S+  LI  Y ++  + EA+ LF+ +  HR V+ ++    SVL ACA +  +  G
Sbjct: 100 PERNTISFVTLIQGYAESVRFLEAIELFVRL--HREVLPNQFTFASVLQACATMEGLNLG 157

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H   +KIG+   + + NAL+ +Y+                               KC
Sbjct: 158 NQIHCHVIKIGLHSDVFVSNALMDVYA-------------------------------KC 186

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +E +  LF     ++ V+W+T+I G+ Q     + L LF+ M  + ++  E T  S +
Sbjct: 187 GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSAL 246

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC  L AL+ G  IH+   K     + ++   LIDMY K G + +A  VF    ++   
Sbjct: 247 RACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEV 306

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWNA+I G++M+GL  ++L +F +M+++ V P+++TFVGVL AC + GL+D+G  +F SM
Sbjct: 307 SWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSM 366

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           IQ+H +EP  +HY CMV LLGR G L +A +LI+ +P  P V  W ALLGAC  H D E+
Sbjct: 367 IQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIEL 426

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G    ++++E++P     HVLLSN++A+  RWD+V  VR  M R+GV K PG S IE+ G
Sbjct: 427 GRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQG 486

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +H F  GD +HP++  I+ ML+ +  K K  GY P+   V  D++ EEKE  L+ HSE+
Sbjct: 487 TVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSER 546

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA++FG+I     +PIRIMKNLRIC DCH A K IS+   REIVVRD +RFHHF+ G CS
Sbjct: 547 LALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCS 606

Query: 794 CMDFW 798
           C D+W
Sbjct: 607 CGDYW 611



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 184/391 (47%), Gaps = 71/391 (18%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
            GK +H  +LK G   D++  N L+NMY     L  A KLFDE P  + +S+ +++ GY 
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 209 NADNVEEAKFIYNK-----MPER---------------------------------NIIA 230
            +    EA  ++ +     +P +                                 ++  
Sbjct: 116 ESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           SN+++ ++ + G +  +  LF E P ++ V+W+ +I  + Q    E+AL LF+NM+++RV
Sbjct: 176 SNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRV 235

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
              EV   S L ACA+L  ++ G  +H+L VK   +  I + NALI MY+ CG I  A  
Sbjct: 236 QATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARL 295

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +FD  +  D +SWN+MISGY                               + H    E 
Sbjct: 296 VFDLMNKQDEVSWNAMISGY-------------------------------SMHGLGREA 324

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLID 469
           L +F +MQ   ++PD+ T V V+SAC +   LDQG+ +  + I+ +G++      T ++ 
Sbjct: 325 LRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVW 384

Query: 470 MYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +  + G +D A+++      +  V  W AL+
Sbjct: 385 LLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 415



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 182/384 (47%), Gaps = 45/384 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N   F T+++ Y +     +AI L+ + L+  V  + +T+  + QA A   
Sbjct: 94  KLFDEMPERNTISFVTLIQGYAESVRFLEAIELF-VRLHREVLPNQFTFASVLQACATME 152

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G  IH HV+K G  SDV+V+N L+++YA CG +  + +LF ESP  + V+WN+++ 
Sbjct: 153 GLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIV 212

Query: 206 GYVNADNVEEAKFIYNKMPE---------------------------------------R 226
           G+V   + E+A  ++  M E                                       +
Sbjct: 213 GHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDK 272

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I+ +N++I ++ + G++ +A  +F  M K+D VSW+A+IS Y  + +  EAL +F  M 
Sbjct: 273 DIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQ 332

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEI 345
           +  V  D++  V VLSACAN  ++  G +     ++  GIE  I     ++ +    G +
Sbjct: 333 ETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHL 392

Query: 346 TTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGY 401
             A KL D       ++ W +++   +    +E  R     ++E   +D  +   + + Y
Sbjct: 393 DKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMY 452

Query: 402 AQHDQFSETLSLFMEMQHHGIRPD 425
           A   ++    S+   M+  G++ +
Sbjct: 453 ATAKRWDNVASVRKNMKRKGVKKE 476



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 124/285 (43%), Gaps = 52/285 (18%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C + +      QI   +I  GL +D F ++ L+           M  S ++FA  ES
Sbjct: 145 LQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG---RMENSMELFA--ES 199

Query: 94  P--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
           P  N   +NT++  ++Q    ++A+ L+  ML   V     TY    +A A   ++  G 
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 259

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH   +K  FD D+ V N LI+MYA CG +  AR +FD     D VSWN++++GY    
Sbjct: 260 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 319

Query: 212 NVEEAKFIYNKMPERNIIAS---------------------------------------- 231
              EA  I++KM E  +                                           
Sbjct: 320 LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 379

Query: 232 NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SCYEQNEM 274
             M+ L GR G++ +A +L  E+P +  ++ W AL+ +C   N++
Sbjct: 380 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDI 424


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/586 (39%), Positives = 337/586 (57%), Gaps = 34/586 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACA 305
           ACRLF+  P  D+   + LI    +++  +++L+ F+ M  +     D      ++ A A
Sbjct: 58  ACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAA 117

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD------------ 353
           NL  V+ G  +H  A+  G++ ++ +   LI MY  CG +  A K+FD            
Sbjct: 118 NLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNA 177

Query: 354 ------------AGHNL-------DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
                        G  L       +L+SWN M++GY K G +E AR +F  M  KD VSW
Sbjct: 178 MVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSW 237

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           STMI G+A +  F E  S F E+Q  G+RP+E +L  V+SAC    AL+ GK +H +I K
Sbjct: 238 STMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEK 297

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLE 513
           +GL     +   L+D Y K G V  A  VF     E+ + SW +++   AM+G  ++++ 
Sbjct: 298 SGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIG 357

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F +M++SG+ P+EI F+ +L AC H GLV++G  +F+ M   + +EP+ +HYGCMVDL 
Sbjct: 358 IFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLY 417

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG L++A E +  MP+      W  LLGAC  HGD ++ E+V  +L EL P++   HV
Sbjct: 418 GRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHV 477

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN +A  G+W D   VR  M  + + K PG SMIE + I++ FLAG + +    E   
Sbjct: 478 LLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYK 537

Query: 694 MLDEMAKKLKLE-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            L E+ ++L++E GY P+   V  DI++EEKE ++  HSEKLA+AFG+  +     IRI+
Sbjct: 538 KLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIV 597

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC DCH   K IS+ +  EIVVRDR RFH FK G CSC D+W
Sbjct: 598 KNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score =  205 bits (522), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 241/491 (49%), Gaps = 43/491 (8%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C+S   F QI + ++  GL +D F A +L+      L    + Y+ ++F +  +P+ 
Sbjct: 12  LNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLS-DSLDYACRLFRYTPNPDV 70

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFEGKLIHD 155
           F+ NT++R   + + PQ ++  +  M  N+    D++++  + +A+A   SV  G  +H 
Sbjct: 71  FMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHC 130

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             L  G D+ ++V  TLI+MY  CG +  ARK+FDE P  + ++WN+++       +++ 
Sbjct: 131 QALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKG 190

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
            + +++ MP RN+++ N M+  + + G +  A  +F EMP KD VSWS +I  +  N  +
Sbjct: 191 GRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYF 250

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EEA   F  +    +  +E  +  VLSACA    ++ G  +H    K G+   +++ NAL
Sbjct: 251 EEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNAL 310

Query: 336 IHMYSSCGEITTAEKLFDAGHN-LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +  YS CG +  A+ +F+   N  +++SW S                             
Sbjct: 311 LDTYSKCGNVLMAQLVFERIMNERNIVSWTS----------------------------- 341

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
             M++  A H    E + +F +M+  GIRPDE   +S++ AC+H   ++QG     + + 
Sbjct: 342 --MMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQG--CEYFDKM 397

Query: 455 NGL-KINSILG--TTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMNG---L 507
            G+  I   +     ++D+Y + G +  A E V           W  L+   +M+G   L
Sbjct: 398 KGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKL 457

Query: 508 ADKSLEMFSEM 518
           A++  E  SE+
Sbjct: 458 AEQVKERLSEL 468



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 161/407 (39%), Gaps = 98/407 (24%)

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E + +S+L+ C +LT  K    +HA  +K+G+E    +   L+H          A  L D
Sbjct: 5   EPLCLSLLNICKSLTTFK---QIHANVLKLGLESDPFIAGKLLH--------HCAISLSD 53

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                                S++ A  LF      DV   +T+I G  + D+  ++L  
Sbjct: 54  ---------------------SLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLK 92

Query: 414 FMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           F+EM+ +    PD  +   ++ A  +L ++  G  +H     +GL  +  +GTTLI MY 
Sbjct: 93  FIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYG 152

Query: 473 KLGCVDNALEVF-------------------HGTEEKG------------VSSWNALIIG 501
           + G V  A +VF                    G + KG            + SWN ++ G
Sbjct: 153 ECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAG 212

Query: 502 FAMNGLADKSLEMFSEM-------------------------------KKSGVTPNEITF 530
           +   G  + + EMF EM                               ++ G+ PNE + 
Sbjct: 213 YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSL 272

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
            GVL AC   G ++ G +  +  I++  L         ++D   + G +  A+ + E + 
Sbjct: 273 TGVLSACAQAGALEFG-KILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIM 331

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL 635
              ++ +W +++ A   HG  E    +  K+ E  ++PD   F  LL
Sbjct: 332 NERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLL 378


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/523 (42%), Positives = 315/523 (60%), Gaps = 30/523 (5%)

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA-GTSVHALAVKIGIECYINLQNAL 335
            A   F  M+   V+ ++     +L ACA L      G   HA A+K G      + N L
Sbjct: 114 RAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTL 173

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           IHMYS  G     E L DA                         R +FD M +  VV+WS
Sbjct: 174 IHMYSCFG----GEFLGDA-------------------------RNVFDRMDKSSVVTWS 204

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI GY +    S+ + LF EMQ  G+RPDE T++ V++A   L AL+  +W+  ++ + 
Sbjct: 205 AMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVERE 264

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G+  +  L   LID   K G VD A+ VF G EE+ V SW ++I   AM G   +++ +F
Sbjct: 265 GIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVF 324

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK +GV P+++ F+GVL AC H G+VDEG+ +F+SM  E+ ++P  +HYGCMVD+ GR
Sbjct: 325 EAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGR 384

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AGM++ A E I +MPM P+   W  L+ AC+ HG  E+GE + R L+   P H+  +V+L
Sbjct: 385 AGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVML 444

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN++A   RW +  E+R  M +RG+ K+PGCS++E +G +HEF+AGD +HPQ  EI  M+
Sbjct: 445 SNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMV 504

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           +EMA++LK  G+   T EV  D+D+E+KE  L  HSEKLAIAF L+   P   +R++KNL
Sbjct: 505 EEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNL 564

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C+DCH A K IS  ++REI+VRDR RFH FK+GSCSC DFW
Sbjct: 565 RVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 206/470 (43%), Gaps = 55/470 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++  +     Q L+ ++ +GL A+    +RL   S    P +       +       + 
Sbjct: 34  LERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLRPSVPIDA 93

Query: 97  FIFNTMMRAYIQRNVPQ---QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           F+ NT++RA+    +P    +A   + LML + V  + +T+P L +A A  L  F G  +
Sbjct: 94  FLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAA-LPGFPGVGL 152

Query: 154 HDHV--LKAGFDSDVYVNNTLINMYAVCGD--LSAARKLFDESPVLDLVSWNSILAGYVN 209
             H   LK GF +D YV+NTLI+MY+  G   L  AR +FD      +V+W++++ GYV 
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVR 212

Query: 210 ADNVEEAKFIYNKM------PE---------------------------------RNIIA 230
                +A  ++ +M      P+                                 +++  
Sbjct: 213 GGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
            N++I    + G+V  A  +F+ M ++ +VSW+++I         +EA+ +F  M    V
Sbjct: 273 CNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGV 332

Query: 291 MVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTA- 348
             D+VV + VL+AC++  +V  G     ++ ++ GI+  I     ++ M+   G +  A 
Sbjct: 333 RPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAM 392

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHD 405
           E +       + I W ++++     G +E   ++   ++ +      ++  + + YA   
Sbjct: 393 EFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQ 452

Query: 406 QFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQG--KWIHAYI 452
           ++ E   +  EM   GI+     +LV +       +A D+   +W   Y+
Sbjct: 453 RWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYM 502



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETL---SLFMEMQHHGIRPDEATLVSVISACT 437
           AL    +  D    +T+I  +A     S  L   + F  M    + P++ T   ++ AC 
Sbjct: 83  ALLRPSVPIDAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACA 142

Query: 438 HLVALDQ-GKWIHAYIRKNGLKINSILGTTLIDMYMKLGC--VDNALEVFHGTEEKGVSS 494
            L      G   HA   K G   +  +  TLI MY   G   + +A  VF   ++  V +
Sbjct: 143 ALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVT 202

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           W+A+I G+   GL+  ++ +F EM+ SGV P+E+T +GV
Sbjct: 203 WSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGV 241


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/761 (34%), Positives = 394/761 (51%), Gaps = 105/761 (13%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +A A+   + E K++HD + ++    +  + N LI+++  CGD  AAR +F+   + +  
Sbjct: 15  RACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEY 74

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM-PKK 257
           SW+ I+  YV++  + +A+ +++ MP  +    N MI  + R   + +A  LF  M   +
Sbjct: 75  SWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGR 134

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA------------ 305
           D+VSW+ L++ Y +++  EEA  LF  M     + D V   SVL   A            
Sbjct: 135 DVVSWAILVAGYARHDRLEEASALFRRM----PLWDTVTCTSVLQGYAHNGHLAEAQELF 190

Query: 306 ---------NLTVVKAGTSVHALAVKI----GIECYINLQNA-----LIHMYSSCGEITT 347
                    + T   A  + +    ++    G+   I L+NA     L+  Y+  G +  
Sbjct: 191 DRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDL 250

Query: 348 AEKLFDAGHN-------------------------------LDLISWNSMISGYL----- 371
           A+K FD                                   +D+I+WN+++ GY      
Sbjct: 251 AKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDL 310

Query: 372 -----------------------------KCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
                                        KCG V+ AR + DAM  +  VSW+ MI+ YA
Sbjct: 311 DEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYA 370

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q+   +E ++LF  M   G  P + TL+SV+ +C  L  L  GK IHA IR + L   S+
Sbjct: 371 QNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSL 430

Query: 463 -LGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            L   +I MY K G ++ A EVF       + V +W A+I  +A NG+ ++++E+F EM 
Sbjct: 431 MLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMV 490

Query: 520 KSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
             G T PN +TF+ VL AC H+G +++   HF SM  +  + P   HY C+VDLLGRAG 
Sbjct: 491 IDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGR 550

Query: 579 LKEAEE-LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
           L EAE+ L+       DV  W A L AC+ +GD E  +R  +++ EL+P++    VLLSN
Sbjct: 551 LGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSN 610

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++A+KGR  DV  +R  M   GV K  G S IE N  +HEF+  D +HP+  EI + L+ 
Sbjct: 611 VYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELER 670

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           + +++K  GY PDT  V  D+D+E+K   L  HSE+LA+A G+I+  P   +R++KNLR+
Sbjct: 671 LHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRV 730

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C+DCH A KFIS+   R+I+VRD  RFHHFK G CSC D+W
Sbjct: 731 CSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 15/191 (7%)

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           I AC     L + K +H  I ++    N  L   LID++ K G  D A  VF+       
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SW+ +I  +  +     +  +F  M       +  T+  ++ A   +  +D+    F+ 
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGF----DAFTWNIMIAAYARINRLDDARELFHG 129

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH- 611
           MI       +   +  +V    R   L+EA  L   MP+   V     L G    H  H 
Sbjct: 130 MISGR----DVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQG--YAHNGHL 183

Query: 612 ----EMGERVG 618
               E+ +R+G
Sbjct: 184 AEAQELFDRIG 194


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 327/551 (59%), Gaps = 43/551 (7%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           +P  D  S + ++  +  +     AL L      H    D      +L ACA L  ++ G
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRR---HLAPPDTHTYPPLLQACARLLALRYG 141

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +HA A K G+   + ++N+L+H+Y +C                               
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGAC------------------------------- 170

Query: 374 GSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           G  E A  +FD +   E+++VSW+++++G+A + + +E L++F EM      PD  T+VS
Sbjct: 171 GLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVS 230

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V++AC  +  L  G+ +H ++ K GL  N+  G  LID+Y K G VD+A ++F    E G
Sbjct: 231 VLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMF---GEMG 287

Query: 492 VS----SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
           V     SW +LI+G A+NG    +L++FS M++  + P EIT VGVL AC H GLVD+G 
Sbjct: 288 VGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGF 347

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R+F+ M  E+ + P  +H GCMVDLLGRAG ++EA   I +MP+ P+   W  LLGAC  
Sbjct: 348 RYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAM 407

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           H   E+GE    +LVEL P H G +VLLSN++A  GRW DV  +R  MV  GV K PG S
Sbjct: 408 HKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHS 467

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
           ++E    ++EF+ GDR+HP+ ++I  ML ++A++L+ +GY P T  V  DI+ EEKE+ L
Sbjct: 468 LVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESAL 527

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSE+LAIAF L+   P  PIRI+KNLR+C DCH A K IS+ +DREI+VRDR RFHHF
Sbjct: 528 NYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHF 587

Query: 788 KHGSCSCMDFW 798
           K G+CSC D+W
Sbjct: 588 KGGACSCKDYW 598



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 170/391 (43%), Gaps = 51/391 (13%)

Query: 81  MSYSFKIFA-FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           + Y+  + +  L SP+ F  NT++R +     P+ A+ L++  L      D +TYP L Q
Sbjct: 74  LRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPP---DTHTYPPLLQ 130

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE--SPVLDL 197
           A A  L++  G+ +H    K G  S V+V N+L+++Y  CG   +A ++FDE   P  +L
Sbjct: 131 ACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNL 190

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPE-------------------------------- 225
           VSWNS+L G+       E   ++ +M E                                
Sbjct: 191 VSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVF 250

Query: 226 -------RNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEE 277
                   N  A N++I L+ + G V +A ++F EM   + +VSW++LI     N    +
Sbjct: 251 VAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMD 310

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALI 336
           AL LF  M   ++M  E+ +V VL AC++  +V  G      +  + GI   I     ++
Sbjct: 311 ALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMV 370

Query: 337 HMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV---V 392
            +    G +  A           + + W +++        +E   A +  ++E D     
Sbjct: 371 DLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSG 430

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
            +  + + YA   ++++   L   M  HG+R
Sbjct: 431 DYVLLSNLYAGVGRWADVHVLRKTMVTHGVR 461



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 34/221 (15%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           +   NS++ L+G  G    A R+F E+P  +++LVSW+++++ +  N    E L +F  M
Sbjct: 157 VFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREM 216

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           ++     D   VVSVL+ACA + V+  G  VH    K+G+    +  NALI +Y+ CG +
Sbjct: 217 LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGV 276

Query: 346 TTAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
             A K+F + G    ++SW S+I G                            ++G+   
Sbjct: 277 DDARKMFGEMGVGRTVVSWTSLIVGL--------------------------AVNGFGM- 309

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
               + L LF  M+   + P E T+V V+ AC+H   +D G
Sbjct: 310 ----DALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDG 346



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 371 LKCGSVEKARALFDAMI-EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           LK   +  A A+   ++   D  S +T++  +A   +    L+L    + H   PD  T 
Sbjct: 69  LKAPPLRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALH---RRHLAPPDTHTY 125

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH--GT 487
             ++ AC  L+AL  G+ +HA   KNGL     +  +L+ +Y   G  ++A  VF     
Sbjct: 126 PPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPP 185

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
            E+ + SWN+++ GFA NG  ++ L +F EM +    P+  T V VL AC  +G++  G 
Sbjct: 186 PERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALG- 244

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           R  +  + +  L  N+     ++DL  + G + +A ++   M +   V +W +L+
Sbjct: 245 RRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLI 299


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 336/567 (59%), Gaps = 32/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N+++ ++ + G +  A  +F  M  + +V+W++LI+ Y +  + +EA+ LF  M    V 
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D   + +VL ACA    ++ G  VH    +  ++  I + NAL+ MY+           
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYA----------- 145

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               KCGS+E A ++F  M  KD++SW+TMI GY+++   +E L
Sbjct: 146 --------------------KCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEAL 185

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           SLF +M    ++PD  TL  ++ AC  L +LD+GK +H +I +NG   +  +   L+DMY
Sbjct: 186 SLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMY 244

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           +K G    A  +F     K + +W  +I G+ M+G  + ++  F+EM+++G+ P+E++F+
Sbjct: 245 VKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFI 304

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            +L AC H GL+DEG R FN M  E  ++P  +HY C+VDLL R+G L  A + I+SMP+
Sbjct: 305 SILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPI 364

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD   WGALL  C+ H D ++ E+V   + EL+P++ G++VLL+N +A   +W++V ++
Sbjct: 365 EPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKL 424

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  + RRG+ K PGCS IE    +H FLAG+ +HPQ  +I+ +L  +  K+K EGY P T
Sbjct: 425 RQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKT 484

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
                + D  +KET L  HSEKLA+AFG++ + P   IR+ KNLR+C DCH  AKFIS+ 
Sbjct: 485 RYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKT 544

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             REIV+RD +RFHHFK G C C  FW
Sbjct: 545 LGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 183/426 (42%), Gaps = 78/426 (18%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           QA A    V  G+ +H   +KA         NTL++MYA CG L  A  +FD   V  +V
Sbjct: 6   QACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVV 65

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMP---------------------------------- 224
           +W S++A Y      +EA  ++++M                                   
Sbjct: 66  TWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYI 125

Query: 225 -----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                + NI   N+++ ++ + G++ +A  +F EMP KD++SW+ +I  Y +N +  EAL
Sbjct: 126 RENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEAL 185

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            LF +M+   +  D   +  +L ACA+L  +  G  VH   ++ G      + NAL+ MY
Sbjct: 186 SLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMY 244

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
             CG    A  LFD     DLI+W  MI                               +
Sbjct: 245 VKCGVPVLARLLFDMIPTKDLITWTVMI-------------------------------A 273

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           GY  H   +  ++ F EM+  GI PDE + +S++ AC+H   LD+G W    + ++   +
Sbjct: 274 GYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG-WRFFNVMQDECNV 332

Query: 460 NSILG--TTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMN---GLADKSLE 513
              L     ++D+  + G +  A +       E   + W AL+ G  ++    LA+K  E
Sbjct: 333 KPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAE 392

Query: 514 MFSEMK 519
              E++
Sbjct: 393 HVFELE 398



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           +VS++ AC +   +  G+ +H    K  +   +    TL+DMY K G +D A+ VF    
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V +W +LI  +A  GL+D+++ +F EM + GV+P+  T   VL AC   G ++ G +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG-K 119

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             ++ I+E+ ++ N      ++D+  + G +++A  +   MP+  D+ +W  ++G   K+
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGGYSKN 178

Query: 609 G-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
              +E     G  ++E++PD      +L    AS    D   EV G ++R G
Sbjct: 179 SLPNEALSLFGDMVLEMKPDGTTLACILPAC-ASLASLDRGKEVHGHILRNG 229



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 169/382 (44%), Gaps = 43/382 (11%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +       + +++ AY +  +  +AI L+  M    V  D +T   +  A A   S
Sbjct: 55  VFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGS 114

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H+++ +    S+++V N L++MYA CG +  A  +F E PV D++SWN+++ G
Sbjct: 115 LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGG 174

Query: 207 YVNADNVEEAKFIYNKM-----PERNIIA------------------------------- 230
           Y       EA  ++  M     P+   +A                               
Sbjct: 175 YSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ 234

Query: 231 --SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             +N+++ ++ + G    A  LF  +P KDL++W+ +I+ Y  +     A+  F  M   
Sbjct: 235 QVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQA 294

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            +  DEV  +S+L AC++  ++  G    + +  +  ++  +     ++ + +  G++  
Sbjct: 295 GIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAM 354

Query: 348 AEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQ 403
           A K   +     D   W +++SG      V+ A  + + + E   ++   +  + + YA+
Sbjct: 355 AYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAE 414

Query: 404 HDQFSETLSLFMEMQHHGIRPD 425
            +++ E   L  ++   G++ +
Sbjct: 415 AEKWEEVKKLRQKIGRRGLKKN 436


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 384/715 (53%), Gaps = 45/715 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  ++ P  F  N+M+  Y++      A+ L+  M   +V   N     L+Q+  +R 
Sbjct: 214 RLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVRE 273

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           ++    ++ D   K    DS  Y ++        C  LS+ R             W   L
Sbjct: 274 AL---DMVVDMQSKGVRLDSTTYTSS-----LTACARLSSLR-------------WGKQL 312

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                      A+ I N +P  +   +++++ L+ + G   EA  +F  +  ++ V+W+ 
Sbjct: 313 ----------HAQVIRN-LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 361

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           LIS + Q   + E++ LF  M    + +D+  + +++S C +   +  G  +H+L +K G
Sbjct: 362 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 421

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + + N+LI MY+ C  + +AE +F   +  D++SW SMI+ Y + G+V KAR  FD
Sbjct: 422 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALD 443
            M EK+V++W+ M+  Y QH    + L ++  M     +RPD  T V++   C  L A  
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  I     K GL I++ +   +I MY K G +  A +VF     K + SWNA+I G++
Sbjct: 542 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 601

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            +G+  +++E+F ++ K G  P+ I++V VL  C H GLV EG  +F+ M + H + P  
Sbjct: 602 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 661

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG++E+ E   + + E
Sbjct: 662 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L     G ++L++ I+A  G+ DD  ++R +M  +G+ K PG S +E +  +H F A D 
Sbjct: 722 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 781

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HPQ+  I   LDE+ +K+   GY      V  D  + E       HSEKLA+AFGL+T+
Sbjct: 782 SHPQVLAIRKKLDELMEKIARLGY------VRTDSTRSE-----IHHSEKLAVAFGLMTL 830

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               PI IMKNLRIC DCHT  K IS    RE V+RD  RFHHF  GSCSC D+W
Sbjct: 831 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 235/510 (46%), Gaps = 69/510 (13%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++  G  S V++ NTL++ Y  CG LS AR+L     ++D+                
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLL----LMDI---------------- 86

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                        N+I  N M+  + + G +++A  LF  MP +D+ SW+ L+S Y Q+ 
Sbjct: 87  ----------AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSR 136

Query: 274 MYEEALVLFMNMIDHRV---MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            Y  +L  F++M  HR      +   +   + +C  L        + A+  K   +    
Sbjct: 137 QYLVSLETFLSM--HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE 194

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AL+ M+  CG +  A +LF       +   NSM++GY+K   V+ A  LFD+M E+D
Sbjct: 195 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 254

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           VVSW+ M+S  +Q  +  E L + ++MQ  G+R D  T  S ++AC  L +L  GK +HA
Sbjct: 255 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 314

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + +N   I+  + + L+++Y K GC   A  VF+   ++   +W  LI GF   G   +
Sbjct: 315 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 374

Query: 511 SLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRH--------------FNSMIQ 555
           S+E+F++M+   +T ++     ++ G C  M L      H               NS+I 
Sbjct: 375 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 434

Query: 556 EHRL---------------EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            +                 E +   +  M+    + G + +A E  + M    +V TW A
Sbjct: 435 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNA 493

Query: 601 LLGACKKHGDHEMGERVGRKLVE---LQPD 627
           +LGA  +HG  E G R+ + ++    ++PD
Sbjct: 494 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 523



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 184/413 (44%), Gaps = 64/413 (15%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   +  S +   Q+ +Q+I      D + AS L++       F E      +F  L   
Sbjct: 298 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK---GVFNSLHDR 354

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +  ++  ++Q     +++ L+  M    + +D +    L      R+ +  G+ +H
Sbjct: 355 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 414

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              LK+G    V V+N+LI+MYA C +L +A  +F      D+VSW S++  Y    NV 
Sbjct: 415 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 474

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+  ++ M E+N+I  N+M+  + + G   +  R++K M  ++ V              
Sbjct: 475 KAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR------------- 521

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
                             D V  V++   CA+L   K G  +    VK+G+    ++ NA
Sbjct: 522 -----------------PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANA 564

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +I MYS CG I  A K+FD  +  D++SWN+MI+GY + G  ++A  +FD ++++     
Sbjct: 565 VITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR----- 619

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
                                     G +PD  + V+V+S C+H   + +GK+
Sbjct: 620 --------------------------GAKPDYISYVAVLSGCSHSGLVQEGKF 646



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF--DAGHNL 358
           L +C     +    ++H   V +G+   + LQN L+H Y SCG ++ A +L   D  H  
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHP- 89

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++I+ N M++GY K G +  A  LF  M  +DV SW+T++SGY Q  Q+  +L  F+ M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 419 HHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC- 476
             G   P+  TL   + +C  L        + A ++K   + +S +   L+DM+++ G  
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 477 ------------------------------VDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                                         VD+ALE+F    E+ V SWN ++   + +G
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L+M  +M+  GV  +  T+   L AC  +  +  G +    +I   R  P+   Y
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI---RNLPHIDPY 326

Query: 567 --GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +V+L  ++G  KEA+ +  S+    +VA W  L+    ++G
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVA-WTVLISGFLQYG 370


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 331/559 (59%), Gaps = 33/559 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G+++ A +LF EM K     W+ ++  Y +N + ++A+ ++  M    V  D      V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA L  + AG  +H   VK G+E    ++  L+ MY   GE+  AE            
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAE------------ 190

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                               LF +M+E+D+V+W+ +I+   Q    S+ L  F EM   G
Sbjct: 191 -------------------FLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAG 231

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           I+PD  T+VS +SAC HL  L+ G+ I+ + R+ G+  N I+    +DM  K G +D A+
Sbjct: 232 IKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F    ++ V SW+ +I G+A+NG ++K+L +FS MK  GV PN +TF+ VL AC H G
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 542 LVDEGHRHFNSMIQ--EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            V+EG ++FN M Q  +  ++P  +HY CMVDLLGR+G L+EA   I+ MP+  D   WG
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWG 411

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC  H + ++G+ V   L EL P+   +HVLLSN++A+ GRW  V +VR  M ++G
Sbjct: 412 ALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
             K+   S +E NG IH    GD++HPQ   I   L+++ K++K  GY P+T  V  D++
Sbjct: 472 ARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVE 531

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            EEKE+TL  HSEKLAIAF LI  SP  PIR+MKNLRIC DCHT  K +SR   REI++R
Sbjct: 532 DEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMR 591

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D++RFHHFK+G CSC DFW
Sbjct: 592 DKNRFHHFKNGICSCKDFW 610



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 39/273 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +MSY+ ++F  +  P  F++NT+M+ Y++  +P +A+ +Y  M +  V  D +T+P + +
Sbjct: 84  DMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIK 143

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A    ++ G  +H HV+K G +    V   L+ MY   G+L  A  LF      DLV+
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 200 WNSILA-----GY---------------VNADNV---------------EEAKFIYNKMP 224
           WN+++A     G+               +  D+V               E  + IY    
Sbjct: 204 WNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAR 263

Query: 225 ER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
           E     NII  N+ + +  + G++ +A  LF EMP+++++SWS +I  Y  N   E+AL 
Sbjct: 264 EEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALA 323

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           LF  M +  V  + V  ++VLSAC++   V  G
Sbjct: 324 LFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEG 356



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 135/305 (44%), Gaps = 70/305 (22%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----------- 228
           GD+S AR+LFDE        WN+I+ GYV     ++A  +Y KM    +           
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 229 ----------------------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                            +++++ + G +  A  LF  M ++DLV
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +W+ALI+   Q     +AL  F  M    +  D V +VS LSAC +L  ++ G  ++  A
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            + GI+  I + NA + M + CG++  A  LFD     ++ISW+++I GY   G  EKA 
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKA- 321

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                                         L+LF  M++ G++P+  T ++V+SAC+H  
Sbjct: 322 ------------------------------LALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 441 ALDQG 445
            +++G
Sbjct: 352 RVNEG 356



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 130/286 (45%), Gaps = 17/286 (5%)

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F E+  +  +F  +   +   +N ++   +Q     +A+  ++ M    +  D+ T  + 
Sbjct: 183 FGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTI-VS 241

Query: 138 AQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           A ++   L   E G+ I++   + G DS++ V+N  ++M A CGD+  A  LFDE P  +
Sbjct: 242 ALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRN 301

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFK 252
           ++SW++++ GY      E+A  ++++M  +    N +   +++      G V E  + F 
Sbjct: 302 VISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFN 361

Query: 253 EMPKKDLVS-------WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
            M + D  +       ++ ++    ++   EEA      M    +  D  +  ++L ACA
Sbjct: 362 FMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIM---PIEADPGIWGALLGACA 418

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
               +K G  V  L  ++  E   +    L +MY++ G     EK+
Sbjct: 419 IHQNIKLGQHVADLLFELAPE-IASYHVLLSNMYAAAGRWHCVEKV 463


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 384/715 (53%), Gaps = 45/715 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  ++ P  F  N+M+  Y++      A+ L+  M   +V   N     L+Q+  +R 
Sbjct: 194 RLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVRE 253

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           ++    ++ D   K    DS  Y ++        C  LS+ R             W   L
Sbjct: 254 AL---DMVVDMQSKGVRLDSTTYTSS-----LTACARLSSLR-------------WGKQL 292

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                      A+ I N +P  +   +++++ L+ + G   EA  +F  +  ++ V+W+ 
Sbjct: 293 ----------HAQVIRN-LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           LIS + Q   + E++ LF  M    + +D+  + +++S C +   +  G  +H+L +K G
Sbjct: 342 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + + N+LI MY+ C  + +AE +F   +  D++SW SMI+ Y + G+V KAR  FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALD 443
            M EK+V++W+ M+  Y QH    + L ++  M     +RPD  T V++   C  L A  
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  I     K GL I++ +   +I MY K G +  A +VF     K + SWNA+I G++
Sbjct: 522 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            +G+  +++E+F ++ K G  P+ I++V VL  C H GLV EG  +F+ M + H + P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 641

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG++E+ E   + + E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L     G ++L++ I+A  G+ DD  ++R +M  +G+ K PG S +E +  +H F A D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 761

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HPQ+  I   LDE+ +K+   GY      V  D  + E       HSEKLA+AFGL+T+
Sbjct: 762 SHPQVLAIRKKLDELMEKIARLGY------VRTDSTRSE-----IHHSEKLAVAFGLMTL 810

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               PI IMKNLRIC DCHT  K IS    RE V+RD  RFHHF  GSCSC D+W
Sbjct: 811 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 235/510 (46%), Gaps = 69/510 (13%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++  G  S V++ NTL++ Y  CG LS AR+L     ++D+                
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLL----LMDIA--------------- 67

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                        N+I  N M+  + + G +++A  LF  MP +D+ SW+ L+S Y Q+ 
Sbjct: 68  -----------HPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSR 116

Query: 274 MYEEALVLFMNMIDHRV---MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            Y  +L  F++M  HR      +   +   + +C  L        + A+  K   +    
Sbjct: 117 QYLVSLETFLSM--HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE 174

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AL+ M+  CG +  A +LF       +   NSM++GY+K   V+ A  LFD+M E+D
Sbjct: 175 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 234

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           VVSW+ M+S  +Q  +  E L + ++MQ  G+R D  T  S ++AC  L +L  GK +HA
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + +N   I+  + + L+++Y K GC   A  VF+   ++   +W  LI GF   G   +
Sbjct: 295 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 354

Query: 511 SLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRH--------------FNSMIQ 555
           S+E+F++M+   +T ++     ++ G C  M L      H               NS+I 
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 556 EHRL---------------EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            +                 E +   +  M+    + G + +A E  + M    +V TW A
Sbjct: 415 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNA 473

Query: 601 LLGACKKHGDHEMGERVGRKLVE---LQPD 627
           +LGA  +HG  E G R+ + ++    ++PD
Sbjct: 474 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 503



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 187/420 (44%), Gaps = 64/420 (15%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   +  S +   Q+ +Q+I      D + AS L++       F E      +F  L   
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK---GVFNSLHDR 334

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +  ++  ++Q     +++ L+  M    + +D +    L      R+ +  G+ +H
Sbjct: 335 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              LK+G    V V+N+LI+MYA C +L +A  +F      D+VSW S++  Y    NV 
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVA 454

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+  ++ M E+N+I  N+M+  + + G   +  R++K M  ++ V              
Sbjct: 455 KAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVR------------- 501

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
                             D V  V++   CA+L   K G  +    VK+G+    ++ NA
Sbjct: 502 -----------------PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANA 544

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +I MYS CG I  A K+FD  +  D++SWN+MI+GY + G  ++A  +FD ++++     
Sbjct: 545 VITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR----- 599

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
                                     G +PD  + V+V+S C+H   + +GK+    +++
Sbjct: 600 --------------------------GAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKR 633



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF--DAGHNL 358
           L +C     +    ++H   V +G+   + LQN L+H Y SCG ++ A +L   D  H  
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHP- 69

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++I+ N M++GY K G +  A  LF  M  +DV SW+T++SGY Q  Q+  +L  F+ M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 419 HHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC- 476
             G   P+  TL   + +C  L        + A ++K   + +S +   L+DM+++ G  
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 477 ------------------------------VDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                                         VD+ALE+F    E+ V SWN ++   + +G
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L+M  +M+  GV  +  T+   L AC  +  +  G +    +I   R  P+   Y
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI---RNLPHIDPY 306

Query: 567 --GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +V+L  ++G  KEA+ +  S+    +VA W  L+    ++G
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVA-WTVLISGFLQYG 350


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 354/607 (58%), Gaps = 41/607 (6%)

Query: 196 DLVSWNSILAGYVNADNVEEAK----FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251
           D ++++ ++        V+E K     I+ K  E  +   N+++ ++ +   + EA  LF
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            EMP++++VSW+ +IS Y  N++ ++AL   + M    V  +     SVL AC  L  ++
Sbjct: 114 DEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR 172

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
               +H   +K G+E  + +++ALI +YS                               
Sbjct: 173 ---QLHCGIIKTGLESDVFVRSALIDVYS------------------------------- 198

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           K   ++ A  +FD M  +D+V W+++I G+AQ+   +E L+LF  M+  G   D+ATL S
Sbjct: 199 KWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTS 258

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V+ ACT L  L+ G+ +H ++ K     + IL   LIDMY K G +++A   F    EK 
Sbjct: 259 VLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKD 316

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V SW+ ++ G A NG + ++LE+F  MK+SG  PN IT +GVL AC H GLV++G  +F 
Sbjct: 317 VISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFR 376

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           SM +   ++P  +HYGC++DLLGRAG L EA +LI  M   PD  TW  LLGAC+ H + 
Sbjct: 377 SMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNV 436

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           ++     +K++EL+P+  G ++LLSNI+A+  RW+DV EVR  M  RG+ K PGCS IE 
Sbjct: 437 DLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEV 496

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
           +  IH F+ GD +HP+I EI   L+++ +++   GY PDT  V  D++ E+KE +L  HS
Sbjct: 497 DKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHS 556

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           EKLAI FGL+ +S    +RI KNLRIC DCH  AK +SR   R IV+RD  R+HHF+ G 
Sbjct: 557 EKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGV 616

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 617 CSCGDYW 623



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 192/415 (46%), Gaps = 70/415 (16%)

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           M  + V  D  TY  L +  + R +V EGK +H+H+   G++  ++V NTL+NMY     
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK--------------FIYNK----- 222
           L  A  LFDE P  ++VSW ++++ Y N  N +  K              F Y+      
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRAC 165

Query: 223 --MP--------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
             +P              E ++   +++I ++ +  ++  A  +F EMP +DLV W+++I
Sbjct: 166 DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSII 225

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
             + QN    EAL LF  M     + D+  + SVL AC  L +++ G  VH   +K   +
Sbjct: 226 GGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQD 285

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             +N  NALI MY  CG +  A   F      D+ISW++M++G  +              
Sbjct: 286 LILN--NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQ-------------- 329

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                       +GY++     + L LF  M+  G RP+  T++ V+ AC+H   +++G 
Sbjct: 330 ------------NGYSR-----QALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGW 372

Query: 447 WIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +    ++K  G+         LID+  + G +D A+++ H  E E    +W  L+
Sbjct: 373 YYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 188/437 (43%), Gaps = 70/437 (16%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFK-IFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
           G+ AD    S LIK  +      E     + IF     P  F+ NT++  Y++ N+ ++A
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 116 ICLYKLMLNNNV-----GVDNYTYPLLAQA-SALRLSVFEG------------------- 150
             L+  M   NV      +  Y+  L  +A   L L   EG                   
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLP 169

Query: 151 --KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
             + +H  ++K G +SDV+V + LI++Y+   DL  A  +FDE P  DLV WNSI+ G+ 
Sbjct: 170 NLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 209 NADNVEEAKFIYNKMP-------------------------------------ERNIIAS 231
              +  EA  ++ +M                                      ++++I +
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILN 289

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N++I ++ + G++ +A   F  M +KD++SWS +++   QN    +AL LF +M +    
Sbjct: 290 NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSR 349

Query: 292 VDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
            + + V+ VL AC++  +V+ G     ++    G++        LI +    G +  A K
Sbjct: 350 PNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVK 409

Query: 351 LF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQ 406
           L  +     D ++W +++       +V+ A      +IE   +D  ++  + + YA   +
Sbjct: 410 LIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQR 469

Query: 407 FSETLSLFMEMQHHGIR 423
           + +   +   M + GIR
Sbjct: 470 WEDVAEVRKTMTNRGIR 486



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+ HG+  D  T   +I  C+   A+ +GK +H +I   G +    +  TL++MY+K   
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A ++F    E+ V SW  +I  ++ N L DK+L+    M + GV PN  T+  VL A
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRA 164

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +       R  +  I +  LE +      ++D+  +   L  A  + + MP + D+ 
Sbjct: 165 CDGL----PNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP-TRDLV 219

Query: 597 TWGALLGACKKHGD 610
            W +++G   ++ D
Sbjct: 220 VWNSIIGGFAQNSD 233



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)

Query: 29  NLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           N+    + L+ C       Q+   +I TGL +D F  S LI   +    + ++  +  +F
Sbjct: 154 NMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYS---KWSDLDNALGVF 210

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
             + + +  ++N+++  + Q +   +A+ L+K M       D  T   + +A    L++ 
Sbjct: 211 DEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACT-GLALL 269

Query: 149 E-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           E G+ +H HVLK  FD D+ +NN LI+MY  CG L  A   F      D++SW++++AG 
Sbjct: 270 ELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGL 327

Query: 208 VNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                  +A  ++  M E     N I    ++      G V +    F+ M K
Sbjct: 328 AQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKK 380



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL----EPNSKH 565
           +++     M++ GV  + IT+  ++  C   G V EG R     + EH      EP    
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKR-----VHEHIFCKGYEPKMFV 92

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
              ++++  +  +L+EAE+L + MP   +V +W  ++ A
Sbjct: 93  VNTLLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISA 130


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/737 (33%), Positives = 382/737 (51%), Gaps = 71/737 (9%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           ++  Y Q N   +A  L+  M  + +  D+ T   L        SV E   +H HV+K G
Sbjct: 110 LIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVG 169

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------------- 207
           +DS + V N+L++ Y     L  A  LF      D V++N++L GY              
Sbjct: 170 YDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFF 229

Query: 208 ---------------------VNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKG 242
                                +  D++E  + +++ + +     N+  +N+++  + +  
Sbjct: 230 KMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHD 289

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            + EA +LF EMP+ D +S++ LI+C   N   EE+L LF  +   R    +    ++LS
Sbjct: 290 RIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLS 349

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
             AN   ++ G  +H+ A+                       +T A          +++ 
Sbjct: 350 IAANSLNLEMGRQIHSQAI-----------------------VTDAIS--------EVLV 378

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
            NS++  Y KC    +A  +F  +  +  V W+ +ISGY Q     + L LF+EM    I
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI 438

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
             D AT  S++ AC +L +L  GK +H+ I ++G   N   G+ L+DMY K G +  AL+
Sbjct: 439 GADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQ 498

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           +F     +   SWNALI  +A NG    +L  F +M  SG+ PN ++F+ +L AC H GL
Sbjct: 499 MFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGL 558

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           V+EG ++FNSM Q ++LEP  +HY  MVD+L R+G   EAE+L+  MP  PD   W ++L
Sbjct: 559 VEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSIL 618

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGF-HVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661
            +C+ H + E+  +   +L  ++   D   +V +SNI+A+ G WD V +V+  +  RG+ 
Sbjct: 619 NSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIR 678

Query: 662 KIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQE 721
           K+P  S +E     H F A D +HPQ  EI   LDE+ K+++ +GY PD+     ++D+E
Sbjct: 679 KVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEE 738

Query: 722 EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
            K  +L  HSE++AIAF LI+    +PI +MKNLR CNDCH A K IS+  +REI VRD 
Sbjct: 739 VKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDS 798

Query: 782 HRFHHFKHGSCSCMDFW 798
            RFHHF  GSCSC D+W
Sbjct: 799 SRFHHFTDGSCSCKDYW 815



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 208/462 (45%), Gaps = 72/462 (15%)

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           ++K GFD +    N  +  +   GDL AARKLFDE                         
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDE------------------------- 67

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                 MP +N+I++N+MI+ + + GN++ A  LF  M ++ +V+W+ LI  Y Q+  + 
Sbjct: 68  ------MPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFL 121

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           EA  LF +M  H ++ D + + ++LS       V     VH   VK+G            
Sbjct: 122 EAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVG------------ 169

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
                              ++  L+  NS++  Y K  S+  A  LF  M EKD V+++ 
Sbjct: 170 -------------------YDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNA 210

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +++GY++     + ++LF +MQ  G RP E T  +V++A   +  ++ G+ +H+++ K  
Sbjct: 211 LLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCN 270

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
              N  +   L+D Y K   +  A ++F+   E    S+N LI   A NG  ++SLE+F 
Sbjct: 271 FVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFR 330

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQE---HRLEPNSKHYGCMVDL 572
           E++ +     +  F  +L    +   ++ G + H  +++ +     L  NS     +VD+
Sbjct: 331 ELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNS-----LVDM 385

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             +     EA  +   +     V  W AL+    + G HE G
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVP-WTALISGYVQKGLHEDG 426



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 166/319 (52%), Gaps = 8/319 (2%)

Query: 316 VHALAVKIGIE---CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           V A  +K G +   C  N Q   +  +   G++  A KLFD   + ++IS N+MI GYLK
Sbjct: 29  VDASMIKTGFDPNTCRFNFQ---VQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLK 85

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G++  AR+LFD+M+++ VV+W+ +I GYAQH++F E  +LF +M  HG+ PD  TL ++
Sbjct: 86  SGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATL 145

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           +S  T   ++++   +H ++ K G     ++  +L+D Y K   +  A  +F    EK  
Sbjct: 146 LSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDN 205

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            ++NAL+ G++  G    ++ +F +M+  G  P+E TF  VL A   M  ++ G +  +S
Sbjct: 206 VTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG-QQVHS 264

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            + +     N      ++D   +   + EA +L   MP   D  ++  L+  C  +G  E
Sbjct: 265 FVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVE 323

Query: 613 MGERVGRKLVELQPDHDGF 631
               + R+L   + D   F
Sbjct: 324 ESLELFRELQFTRFDRRQF 342



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 189/434 (43%), Gaps = 71/434 (16%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   FN ++  Y +      AI L+  M +       +T+  +  A      
Sbjct: 196 LFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD 255

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ +H  V+K  F  +V+V N L++ Y+    +  ARKLF E P +D +S+N ++  
Sbjct: 256 IEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITC 315

Query: 207 YVNADNVEEA----------KFIYNKMPERNI--IASNSMIVLFGRK------------- 241
                 VEE+          +F   + P   +  IA+NS+ +  GR+             
Sbjct: 316 CAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISE 375

Query: 242 ---GN-----------VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
              GN             EA R+F ++  +  V W+ALIS Y Q  ++E+ L LF+ M  
Sbjct: 376 VLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHR 435

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            ++  D     S+L ACANL  +  G  +H+  ++ G    +   +AL+ MY+ CG I  
Sbjct: 436 AKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKE 495

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++F      + +SWN++IS                                YAQ+   
Sbjct: 496 ALQMFQEMPVRNSVSWNALIS-------------------------------AYAQNGDG 524

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTT 466
              L  F +M H G++P+  + +S++ AC+H   +++G ++ ++  +   L+       +
Sbjct: 525 GHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYAS 584

Query: 467 LIDMYMKLGCVDNA 480
           ++DM  + G  D A
Sbjct: 585 MVDMLCRSGRFDEA 598


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/765 (32%), Positives = 394/765 (51%), Gaps = 77/765 (10%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E   + K+F  +   N   +N+++  Y Q     + + L+K    +++ +D +T+     
Sbjct: 69  ETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALS 128

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                L +  G+LIH  +  +G    V + N+LI+MY  CG +  AR +F+ +  LD VS
Sbjct: 129 VCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVS 188

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER--------------------------------- 226
           WNS++AGYV   + +E   +  KM                                    
Sbjct: 189 WNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGC 248

Query: 227 --------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ-----NE 273
                   +++   +++  + + G++ +A ++FK MP  ++V ++A+I+ + Q     +E
Sbjct: 249 AVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADE 308

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
              EA+ LF  M    +   E    S+L AC+ +   + G  +HA   K  ++    + N
Sbjct: 309 FANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGN 368

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ +YS  G I                         LKC         F +  + DVVS
Sbjct: 369 ALVELYSLSGSIEDG----------------------LKC---------FHSTPKLDVVS 397

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+++I G+ Q+ QF   L+LF E+   G +PDE T+  ++SAC +L A+  G+ IHAY  
Sbjct: 398 WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAI 457

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K G+   +I+  + I MY K G +D+A   F  T+   + SW+ +I   A +G A ++++
Sbjct: 458 KTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVD 517

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F  MK SG+ PN ITF+GVL AC H GLV+EG R+F  M ++H + PN KH  C+VDLL
Sbjct: 518 LFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLL 577

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG L EAE  I       D   W +LL AC+ H   + G+RV  +++EL+P+    +V
Sbjct: 578 GRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYV 637

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LL NI+   G      E+R +M  RGV K PG S IE   ++H F+AGDR+HP    I  
Sbjct: 638 LLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYV 697

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            L+EM +++K   Y  + L       + +  + +  HSEKLA+ FG+I++    P+R+MK
Sbjct: 698 QLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMK 757

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR C  CH   K  SR  +REI++RD  RFH F+ GSCSC D+W
Sbjct: 758 NLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 251/526 (47%), Gaps = 77/526 (14%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +D+ TY  L Q S    S+  GKL H H++K  F   +++ N L+ MY  CG+   A+KL
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIY----------NKMPERN----------- 227
           FD  P  ++VSWNS+++GY       E   ++          +K    N           
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 228 ------------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                             ++ +NS+I ++ + G +  A  +F+   + D VSW++LI+ Y
Sbjct: 137 RLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY 196

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN--LTVVKAGTSVHALAVKIGIEC 327
            +    +E L L + M+ H + ++   + S L AC +   + ++ G  +H  AVK+G++ 
Sbjct: 197 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 256

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
            + +  AL+  Y+  G++  A K+F    + +++ +N+MI+G+L+               
Sbjct: 257 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ--------------- 301

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
                   TM   +A     +E + LF EMQ  G++P E T  S++ AC+ + A + GK 
Sbjct: 302 ------METMADEFA-----NEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ 350

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IHA I K  L+ +  +G  L+++Y   G +++ L+ FH T +  V SW +LI+G   NG 
Sbjct: 351 IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQ 410

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR----HFNSMIQEHRLEPNS 563
            +  L +F E+  SG  P+E T   +L AC ++  V  G +       + I    +  NS
Sbjct: 411 FEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNS 470

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +     + +  + G +  A    +    +PD+ +W  ++ +  +HG
Sbjct: 471 Q-----ICMYAKCGDIDSANMTFKETK-NPDIVSWSVMISSNAQHG 510



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 11/229 (4%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C + + F    QI +Q+    L +D F  + L++  + L   IE     K F     
Sbjct: 336 LKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS-LSGSIE--DGLKCFHSTPK 392

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   + +++  ++Q    +  + L+  +L +    D +T  ++  A A   +V  G+ I
Sbjct: 393 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 452

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H + +K G  +   + N+ I MYA CGD+ +A   F E+   D+VSW+ +++        
Sbjct: 453 HAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCA 512

Query: 214 EEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKKD 258
           +EA  ++  M    I  ++     ++V     G V E  R F E+ KKD
Sbjct: 513 KEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYF-EIMKKD 560



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 2/192 (1%)

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+  D  T   ++   T   +L  GK  H ++ K   K    L   L+ MY K G  D A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F    ++ V SWN+LI G+   G   + + +F E + S +  ++ TF   L  C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
             +  G R  +++I    L         ++D+  + G +  A  + ES     D  +W +
Sbjct: 134 LDLRLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNS 191

Query: 601 LLGACKKHGDHE 612
           L+    + G ++
Sbjct: 192 LIAGYVRIGSND 203


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 374/703 (53%), Gaps = 69/703 (9%)

Query: 150 GKLIHDHVLKAGF---DSDVYVNNTLINMYAVCGDLSAARKLFDESPVL------DLVSW 200
           G+  H   LK GF     + +  N L++MYA  G +  A+ LF  +         D+V+W
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNI-------------------------------- 228
           N++++  V      EA  +   M    +                                
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 229 ---IASNSMIV-----LFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEA 278
              +A+NS +      ++     VA A R+F  +P+  + L  W+A+I  Y Q  M EEA
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 279 LVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           L LF  M  +      E  +  VL ACA         ++H   VK G+     +QNAL+ 
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMD 430

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MY+  GE+  A ++F      D++SWN++I+G +  G   +A   F  + E  + S S  
Sbjct: 431 MYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEA---FQLVTEMQLPSPSPS 487

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
            S   +            E + H   P+  TL++++  C  L A  +GK IH Y  ++ L
Sbjct: 488 SSSTTE------------EGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHAL 535

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           + +  +G+ L+DMY K GC+  +  VF     + V +WN LI+ + M+GL D+++ +F E
Sbjct: 536 ESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDE 595

Query: 518 MKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           M   G  TPNE+TF+  L AC H GLVD G   F+ M ++H ++P    + C+VD+LGRA
Sbjct: 596 MAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRA 655

Query: 577 GMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           G L EA  +I SM P    V+ W +LLGAC+ H + E+GE    +L EL+P     +VLL
Sbjct: 656 GRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLL 715

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
            NI+++ G WD  + VR  M R+GV K PGCS IE +G IH F+AG+ +HP   E+   +
Sbjct: 716 CNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHM 775

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           D + ++++ EGYAPDT  V  D+D++EK   L  HSEKLAIAFGL+   P   IR+ KNL
Sbjct: 776 DALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNL 835

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+CNDCH AAKF+S+   R+IV+RD  RFHHF+ GSCSC D+W
Sbjct: 836 RVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 210/485 (43%), Gaps = 105/485 (21%)

Query: 85  FKIFAFLESPNG---FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           F+  A   SP G     +NTM+   +Q     +A+ +   M++  V  D  T+     AS
Sbjct: 233 FRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTF-----AS 287

Query: 142 AL----RLSVFE-GKLIHDHVLK-AGFDSDVYVNNTLINMYAVCGDLSAARKLFD--ESP 193
           AL    RL +   G+ +H  VLK A   ++ +V + L++MYA    +++AR++FD    P
Sbjct: 288 ALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEP 347

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--------------------------- 226
              L  WN+++ GY  A   EEA  ++++M                              
Sbjct: 348 SRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKE 407

Query: 227 -------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALIS-CYEQN 272
                        N    N+++ ++ R G +  A R+F  +  +D+VSW+ LI+ C  Q 
Sbjct: 408 AMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQG 467

Query: 273 EMYEE-ALVLFMNMID--------------HRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
              E   LV  M +                HR M + + ++++L  CA L     G  +H
Sbjct: 468 HAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIH 527

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
             AV+  +E  I + +AL+ MY+ CG +  +  +FD     ++I+WN +I  Y   G  +
Sbjct: 528 GYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGD 587

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           +A ALFD M      +                              P+E T ++ ++AC+
Sbjct: 588 EAVALFDEMAAGGEAT------------------------------PNEVTFIAALAACS 617

Query: 438 HLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE--EKGVSS 494
           H   +D+G +  H   R +G+K    L   ++D+  + G +D A  +    E  E+ VS+
Sbjct: 618 HSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSA 677

Query: 495 WNALI 499
           W++L+
Sbjct: 678 WSSLL 682



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/432 (19%), Positives = 185/432 (42%), Gaps = 72/432 (16%)

Query: 58  LIADTFAASRLIKFSTDLLPFIE-MSYSFKIFAFLESPNGFI--FNTMMRAYIQRNVPQQ 114
           L A++F AS L+    D+    E ++ + ++F  +  P+  +  +N M+  Y Q  + ++
Sbjct: 314 LAANSFVASALV----DMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE 369

Query: 115 AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK-LIHDHVLKAGFDSDVYVNNTLI 173
           A+ L+  M        + T       +  R   F GK  +H +V+K G   + +V N L+
Sbjct: 370 ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALM 429

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---------- 223
           +MYA  G++  AR++F      D+VSWN+++ G V   +  EA  +  +M          
Sbjct: 430 DMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSS 489

Query: 224 ------------------------------PER---------------NIIASNSMIVLF 238
                                         P R               +I   ++++ ++
Sbjct: 490 STTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMY 549

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVV 297
            + G +A +  +F  +P++++++W+ LI  Y  + + +EA+ LF  M        +EV  
Sbjct: 550 AKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTF 609

Query: 298 VSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKL---FD 353
           ++ L+AC++  +V  G  + H +    G++   +L   ++ +    G +  A  +    +
Sbjct: 610 IAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSME 669

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSET 410
            G    + +W+S++       +VE      + + E    +   +  + + Y+    + ++
Sbjct: 670 PGEQ-QVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKS 728

Query: 411 LSLFMEMQHHGI 422
           +++ + M+  G+
Sbjct: 729 VAVRVRMRRQGV 740



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 19/278 (6%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIE--KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
           N++++ Y +CG ++ A ALF A     +D VS++++IS      Q+   L    +M   G
Sbjct: 104 NALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEG 163

Query: 422 IRPDEA--TLVSVISACTHLVALDQ---GKWIHAYIRKNGL---KINSILGTTLIDMYMK 473
            R D +  TLVSV+ AC+HL   D    G+  HA+  K G             L+ MY +
Sbjct: 164 -RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYAR 222

Query: 474 LGCVDNALEVFHGTEEK------GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           LG VD+A  +F  T          V +WN +I      G   +++E+  +M   GV P+ 
Sbjct: 223 LGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDG 282

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF   L AC  + ++  G      ++++  L  NS     +VD+      +  A  + +
Sbjct: 283 VTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFD 342

Query: 588 SMP-MSPDVATWGALLGACKKHG-DHEMGERVGRKLVE 623
            +P  S  +  W A++    + G D E  E   R   E
Sbjct: 343 MVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAE 380


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/563 (39%), Positives = 337/563 (59%), Gaps = 39/563 (6%)

Query: 243 NVAEACRLFKEMP-KKDLVSWSALISCYEQ--NEMYEEALV---LFMNMIDHRVMVDEVV 296
           ++A A ++F  +P   D V ++ L+  Y +  N    EA     +F+ M++  V  D   
Sbjct: 76  HLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYT 135

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
            VS+L ACA     + G   HALAVK+G   +  ++  LI+MY+                
Sbjct: 136 FVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYA---------------- 179

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
                          +CG    AR +F       VVS++ MI+   +  +  E L LF E
Sbjct: 180 ---------------ECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFRE 224

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           MQ  G++P   T++SV+SAC  L AL+ G+W+H Y+RK GL     + T LIDMY K G 
Sbjct: 225 MQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGS 284

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +++A++VF G E K   +W+ +I+ +A +G   +++ +F EMKK G+ P++ITF+GVL A
Sbjct: 285 LEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYA 344

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GLV EG ++F+ M ++H + P  KHYGC+ DLL R+G L+ A + I+ +P++P   
Sbjct: 345 CSHSGLVSEGLQYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPI 403

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W  LL AC  HGD E+G+RV  ++++L   H G +V+ SN+ A+ G W+++  VR +M 
Sbjct: 404 LWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMS 463

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV-A 715
            +GVVK+PGCS IE +  +HEF AGD  HP+  E   M+DE+  +LKL GY P+T  V  
Sbjct: 464 EKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFH 523

Query: 716 FDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDRE 775
            ++ +EEK  +L  HSEKLAIAFGL+  +P   +R++KNLR+C DCH+ AK +S  F+R 
Sbjct: 524 VEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRR 583

Query: 776 IVVRDRHRFHHFKHGSCSCMDFW 798
           I++RD +RFHHF+ G CSC D+W
Sbjct: 584 IILRDLNRFHHFEEGICSCGDYW 606



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 128/547 (23%), Positives = 226/547 (41%), Gaps = 77/547 (14%)

Query: 8   AHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASR 67
           A L++T    + AKP   P     +L +HL  C S +   Q+ +  +  GL A     +R
Sbjct: 4   APLTATPAPLLPAKPKSPPPQQHPVL-SHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTR 62

Query: 68  LIKFST--DLLPFIEMSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQ-----AICLY 119
           L+   T  D  P   ++Y+ ++F  +  P +   +NT++R Y + + P       A+ ++
Sbjct: 63  LLTLCTGPDAGP-AHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVF 121

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
             ML   V  D YT+  L +A A   +  EG+  H   +K G     YV  TLINMYA C
Sbjct: 122 VRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAEC 181

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------------ 227
           GD  AAR +F  +    +VS+N+++A  V +    EA  ++ +M  +             
Sbjct: 182 GDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVL 241

Query: 228 ---------------------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                      +  S ++I ++ + G++ +A  +F+ M  KD  
Sbjct: 242 SACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQ 301

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +WS +I  Y  +    EA+ LF  M    +  D++  + VL AC++  +V  G       
Sbjct: 302 AWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM 361

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKA 379
              GI   I     +  + +  G++  A K  D    N   I W +++S     G  E  
Sbjct: 362 KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELG 421

Query: 380 RALFDAMIE------KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           + +F+ +++       D V +S + +     ++ +    L  E             V  +
Sbjct: 422 KRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKG-----------VVKV 470

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK----LGCVDNALEVFH---G 486
             C+   +++    +H +   +G    S     ++D  +     +G V N   VFH   G
Sbjct: 471 PGCS---SIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMG 527

Query: 487 TEEKGVS 493
            EEK +S
Sbjct: 528 EEEKAIS 534


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 358/605 (59%), Gaps = 37/605 (6%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           ++SIL   V+   + E + ++  M +   + S      +IVL+ +   + +A  +F EMP
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           ++++VSW+A+IS Y Q     EAL LF+ M+      +     ++L++C      + G  
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H++A+K   E ++ + ++L+ MY+  G I  A                           
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAH-------------------------- 218

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
                 +F  + E+DVV+ + +ISGYAQ     E L LF ++Q  G+  +  T  SV++A
Sbjct: 219 -----GVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
            + L AL+ GK +H+++ ++G     +L  +LIDMY K G V  A  +F    E+   SW
Sbjct: 274 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 333

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           NA+++G++ +G+A + LE+F  M++   V P+ IT++ VL  C H  L D G   F +M+
Sbjct: 334 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMV 393

Query: 555 Q-EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
             +  +EP+  HYGC+VDLLGRAG ++EA + I+ MP  P  A WG+LLG+C+ H D E+
Sbjct: 394 NGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEI 453

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G  VG+KL+EL+P++ G +V+LSN++AS G+W+D+  +R +M  + V K PG S +E + 
Sbjct: 454 GIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQ 513

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
           I+H F A D THP+  E+ N + E++ K K +GY PD   V +D+D+E+KE  L  HSEK
Sbjct: 514 IVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEK 573

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+AFGLI       IR++KNLRIC DCH+ AKF+SR + R +++RD++RFH+   G CS
Sbjct: 574 LALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCS 633

Query: 794 CMDFW 798
           C D+W
Sbjct: 634 CGDYW 638



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 176/408 (43%), Gaps = 59/408 (14%)

Query: 11  SSTIKSSVNAKPIFKPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASR 67
           S  +K ++    I    +     ++ L +C   ++ ++  ++ + MI T  +   +  +R
Sbjct: 43  SGQLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTR 102

Query: 68  LIKF--STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           LI      D L       +  +F  +   N   +  M+ AY QR    +A+ L+  ML +
Sbjct: 103 LIVLYNKCDCL-----GDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRS 157

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           +   +++T+  +  +    L    G+ IH   +K  ++S ++V ++L++MYA  G +  A
Sbjct: 158 DTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDA 217

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------------------ 227
             +F   P  D+V+  +I++GY      EEA  ++ ++                      
Sbjct: 218 HGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGL 277

Query: 228 ---------------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                ++  NS+I ++ + GNV  A R+F  MP++  +SW+A++
Sbjct: 278 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 337

Query: 267 SCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV--KI 323
             Y ++ M  E L LF  M  +++V  D +  ++VLS C++  +   G  +    V  K 
Sbjct: 338 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 397

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS----WNSMI 367
           GIE  I     ++ +    G +   E+ FD    +  +     W S++
Sbjct: 398 GIEPDIGHYGCVVDLLGRAGRV---EEAFDFIKKMPFVPTAAIWGSLL 442


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 292/440 (66%)

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           D  + +S++   L    +   R L   + +    SW++MI+GY Q  +  E + LF +M+
Sbjct: 160 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKME 219

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
             G++ +E T+V+V++AC  L ALD G  IH Y  ++G K N  +  TLIDMY+K GC++
Sbjct: 220 EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLE 279

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538
            A +VF   EE+ V SW+A+I G AM+G A+++L +FS+M + G+ PN +TF+G+L AC 
Sbjct: 280 EACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 339

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           HMGL+ EG R F SM +++ + P  +HYGCMVDLL RAG+L EA E I +MPM P+   W
Sbjct: 340 HMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVW 399

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           GALLGAC+ H + EM E   + L+EL P +DG++V+LSNI+A  GRW+D   VR  M  R
Sbjct: 400 GALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 459

Query: 659 GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
            V K PG S I  +G++HEF+AG+ +HP   +I    +E+ ++++L+GY P+T  V  DI
Sbjct: 460 QVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDI 519

Query: 719 DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
           ++ EK   + RHSEKLA+ FGL+      PIRIMKNLRIC DCH+A K IS   +REIVV
Sbjct: 520 EEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVV 579

Query: 779 RDRHRFHHFKHGSCSCMDFW 798
           RDR+RFH F   SCSC D+W
Sbjct: 580 RDRNRFHCFNDNSCSCRDYW 599



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 187/407 (45%), Gaps = 26/407 (6%)

Query: 19  NAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           N KP    T+ + +L        S  +  Q+ +Q+I T         +R +       P 
Sbjct: 54  NVKPQSSETLKIDLLRNF----NSPFELRQVHAQIIKTNAPLSILPLTR-VGLVCAFTP- 107

Query: 79  IEMSYSFKIFAFLES--PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL 136
               Y+ +IF  +E   P  F++N+ ++A  + + P  AI L+  +   +V  D +T   
Sbjct: 108 -SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSS 166

Query: 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF---DESP 193
           + +A    L +  G+++H  V K GF S      ++I  Y  CG    A  LF   +E+ 
Sbjct: 167 VLRACLNLLDLSNGRILHGVVEKVGFRS----WTSMIAGYVQCGKAKEAIHLFAKMEEAG 222

Query: 194 V-LDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEAC 248
           V  + V+  ++LA   +   ++    I+        +RN+  SN++I ++ + G + EAC
Sbjct: 223 VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEAC 282

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++F+EM ++ +VSWSA+I     +   EEAL LF +M    +  + V  + +L AC+++ 
Sbjct: 283 KVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMG 342

Query: 309 VVKAGTSVHA-LAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSM 366
           ++  G    A +    GI   I     ++ + S  G +  A E + +     + + W ++
Sbjct: 343 LISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGAL 402

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVS---WSTMISGYAQHDQFSET 410
           +       +VE A      ++E D ++   +  + + YA+  ++ +T
Sbjct: 403 LGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDT 449


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/683 (35%), Positives = 373/683 (54%), Gaps = 83/683 (12%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +D+  +  L  +     S  + + IH  ++K  F S++++ N L++ Y  CG    ARK+
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 189 FDESP------------VL-------------------DLVSWNSILAGYVNADNVEEAK 217
           FD  P            VL                   D  SWN++++G+   D  EEA 
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 218 FIYNKMPERNIIAS---------------------------------------NSMIVLF 238
             +  M   + + +                                       ++++ ++
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            + G VA A R F  M  +++VSW++LI+CYEQN    +AL +F+ M+D+ V  DE+ + 
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEITTAEKLFDAG 355
           SV+SACA+ + ++ G  +HA  VK   + Y N   L NAL+ MY+ C  +  A  +FD  
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKR--DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              +++S  SM+ GY +  SV+ AR +F  M+EK+VVSW+ +I+GY Q+ +  E + LF+
Sbjct: 315 PLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFL 374

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS------ILGTTLID 469
            ++   I P   T  ++++AC +L  L  G+  H  I K+G    S       +G +LID
Sbjct: 375 LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLID 434

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MYMK G V++   VF    E+ V SWNA+I+G+A NG    +LE+F +M  SG  P+ +T
Sbjct: 435 MYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVT 494

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
            +GVL AC H GLV+EG R+F+SM  E  L P   H+ CMVDLLGRAG L EA +LI++M
Sbjct: 495 MIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTM 554

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           PM PD   WG+LL ACK HG+ E+G+ V  KL+E+ P + G +VLLSN++A  GRW DV+
Sbjct: 555 PMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
            VR  M +RGV+K PGCS IE    +H F+  D+ HP   +I  +L  + +++K  GY P
Sbjct: 615 RVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVP 674

Query: 710 DTLEVAFDIDQEEKETTLFRHSE 732
           +  +   +I +EE ++ L  H E
Sbjct: 675 EADDD--EICEEESDSELVLHFE 695



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/520 (23%), Positives = 221/520 (42%), Gaps = 116/520 (22%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC  F+   ++  +M      +     S L KF        ++  +F +F  +  P+   
Sbjct: 66  KCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFG-------KLDEAFNVFKSMPEPDQCS 118

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+  + Q +  ++A+  +  M + +  ++ Y++     A A    +  G  IH  + 
Sbjct: 119 WNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALIS 178

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----------- 207
           K+ +  DVY+ + L++MY+ CG ++ A++ FD   V ++VSWNS++  Y           
Sbjct: 179 KSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALE 238

Query: 208 ---------VNADN---------------VEEAKFIYNKMPER-----NIIASNSMIVLF 238
                    V  D                + E   I+ ++ +R     +++  N+++ ++
Sbjct: 239 VFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMY 298

Query: 239 GRKGNVAEACRLFKEMP-------------------------------KKDLVSWSALIS 267
            +   V EA  +F  MP                               +K++VSW+ALI+
Sbjct: 299 AKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIA 358

Query: 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI-- 325
            Y QN   EEA+ LF+ +    +        ++L+ACANL  +K G   H   +K G   
Sbjct: 359 GYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWF 418

Query: 326 ----ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
               E  I + N+LI MY  CG +     +F+     D++SWN+MI G            
Sbjct: 419 QSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVG------------ 466

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
                              YAQ+   +  L +F +M   G +PD  T++ V+SAC+H   
Sbjct: 467 -------------------YAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGL 507

Query: 442 LDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           +++G ++ H+   + GL       T ++D+  + GC+D A
Sbjct: 508 VEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEA 547



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 54/276 (19%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC+   +   +  +M L  ++++T       + ++       +  +  +F+ +   N   
Sbjct: 300 KCRRVNEARLVFDRMPLRNVVSETSMVCGYARAAS-------VKAARLMFSNMMEKNVVS 352

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y Q    ++A+ L+ L+   ++   +YT+  L  A A    +  G+  H  +L
Sbjct: 353 WNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQIL 412

Query: 159 KAGF------DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN--- 209
           K GF      +SD++V N+LI+MY  CG +     +F+     D+VSWN+++ GY     
Sbjct: 413 KHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGY 472

Query: 210 --------------------------------ADNVEEAKFIYNKMPERNIIAS-----N 232
                                           A  VEE +  ++ M     +A       
Sbjct: 473 GTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFT 532

Query: 233 SMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            M+ L GR G + EA  L + MP + D V W +L++
Sbjct: 533 CMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLA 568


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/686 (33%), Positives = 378/686 (55%), Gaps = 71/686 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  ++ +G   + +++N+L+N Y  CG L+ A+++F  +P  ++VSW  +++G    D 
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDC 102

Query: 213 VEEAKFIYNKM----------------P-----------------------ERNIIASNS 233
             EA  ++ +M                P                       E N+    +
Sbjct: 103 FVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ ++ + G +  A +LF+ M ++++V+W+A++S Y  +   EEA+ LF  M    ++VD
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              ++S++ A  ++  ++ GT +H   ++ G E   +++ AL+ +Y S            
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVS------------ 270

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
             HN                  V+ A  +F  M  KDV +W+ M++G++    +   +  
Sbjct: 271 --HN-----------------CVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKH 311

Query: 414 FMEMQH-HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           F +M     ++ D   L+ ++S+C+H  AL QG+ +HA   K     N  +G+ +IDMY 
Sbjct: 312 FNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYA 371

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
             G +++A   F+G  EK V  WNA+I G  MNG    ++++F +MK SG+ P+E TFV 
Sbjct: 372 NCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVS 431

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC H G+V EG + F  M++   + PN +HY C++D+LGRAG L  A   I +MP  
Sbjct: 432 VLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQ 491

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           PD   +  LLGAC+ HG+ ++G  + +K+ E++P+  G++VLLSN++A  G W+ V   R
Sbjct: 492 PDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTR 551

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
             +  + + K PG S IE N  I+ F+AG++ HPQ  +I+ +L  +  K+K  GY P+T 
Sbjct: 552 ASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTN 611

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            +  D+  + K+  L+ HSEK+AIAFGL+   P   IRI KNLR C+DCHTA+KF+S+ F
Sbjct: 612 VLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVF 671

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            R +V++D +RFH F+ G CSC D+W
Sbjct: 672 GRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/590 (22%), Positives = 255/590 (43%), Gaps = 124/590 (21%)

Query: 26  PTINLSIL-ETH---LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           PT  LS L + H   L+K +  K   QI +Q+I +GL  +TF ++ L+          + 
Sbjct: 16  PTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADA 75

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT----YPLL 137
               +IF      N   +  ++    + +   +AI +++ M+  N   +  T     P  
Sbjct: 76  K---QIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAF 132

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A    +R++    K +H   ++ GF+ +V+V   L++MY+  G +  AR+LF+     ++
Sbjct: 133 ANLGLIRIA----KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-----------------------NSM 234
           V+WN+I++GY +    EEA  ++N M  + ++                         +  
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 235 IVLFGRKGN----------------VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
           I+  G + +                V +A R+F EM  KD+ +W+ +++ +     ++ A
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 279 LVLFMNMID-HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           +  F  M+    + +D + ++ +LS+C++   ++ G  VHALA+K      I + +A+I 
Sbjct: 309 IKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MY++CG +  A++ F      D++ WN+MI+G                            
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAG--------------------------NG 402

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           ++GY      ++ + LF++M+  G+ PDE+T VSV+ AC+H   + +G  I  ++ K   
Sbjct: 403 MNGYG-----TDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 458 KINSILG-TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
            I ++     +ID+  + G +D A                                  +S
Sbjct: 458 VIPNLQHYACVIDILGRAGQLDAA----------------------------------YS 483

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            +      P+   +  +LGACR  G +  GH     + +   +EPN   Y
Sbjct: 484 FINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFE---MEPNDAGY 530


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/762 (33%), Positives = 404/762 (53%), Gaps = 85/762 (11%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  LE  N + +  ++ A+      ++ +   + M  + V  D  T+     +     S+
Sbjct: 15  FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESL 74

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWN----- 201
            +G  IH  V+ +  + D  V+N L+NMY  CG LS A+++F +     +++SW+     
Sbjct: 75  RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGA 134

Query: 202 ------------------------------SILAGYVNADNVEEAKFIYNKMP----ERN 227
                                         +IL+   +   V++ + I++ +     E  
Sbjct: 135 HALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESE 194

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNM 285
           ++ +N+++ ++GR G V EA ++F  M +  +D+VSW+ ++S Y  N+  ++A+ L+  M
Sbjct: 195 LLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM 254

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
              ++  D+V  VS+LSAC++   V  G  +H   V   +E  + + NAL+ MY+     
Sbjct: 255 ---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA----- 306

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     KCGS  +ARA+FD M ++ ++SW+T+IS Y +  
Sbjct: 307 --------------------------KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRR 340

Query: 406 QFSETLSLF---MEMQHHG----IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
             +E   LF   +E++ +G    ++PD    V++++AC  + AL+QGK +       GL 
Sbjct: 341 LVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLS 400

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
            +  +GT ++++Y K G ++ A  +F        V  WNA+I  +A  G + ++L++F  
Sbjct: 401 SDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWR 460

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR-LEPNSKHYGCMVDLLGRA 576
           M+  GV P+  +FV +L AC H GL D+G  +F SM  E+R +    +H+GC+ DLLGR 
Sbjct: 461 MEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRG 520

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           G LKEAEE +E +P+ PD   W +LL AC+ H D +  + V  KL+ L+P     +V LS
Sbjct: 521 GRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALS 580

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           NI+A   +W  V +VR  M  +GV K  G S IE    +H+F  GD  HP+  EI   L 
Sbjct: 581 NIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELA 640

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           ++  ++K  GY PDT  V   +D++EKE  LF HSE+LAIA GLI+     P+R+ KNLR
Sbjct: 641 KLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLR 700

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C+DCHTA K IS+   R+IVVRD  RFH FK G CSC D+W
Sbjct: 701 VCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 4/269 (1%)

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y  C S   A+A FDA+ ++++ SW+ +++ +A   Q  ETL     M+  G+RPD  T 
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
           ++ + +C    +L  G  IH  +  + L+I+  +   L++MY K G + +A  VF   E 
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 490 -KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V SW+ +    A++G   ++L  F  M   G+   +   V +L AC    LV +G R
Sbjct: 122 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-R 180

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKK 607
             +S I     E        ++ + GR G ++EA ++ ++M  +  DV +W  +L +   
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML-STYV 239

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           H D         + ++L+PD   +  LLS
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDKVTYVSLLS 268



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY       +A   F   E++ + SW  L+  FA++G + ++L     M++ GV P+ +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+  LG+C     + +G R  + M+ + RLE + K    ++++  + G L  A+ +   M
Sbjct: 61  FITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 590 PMSPDVATWGALLGACKKHGD 610
             + +V +W  + GA   HG+
Sbjct: 120 ERTRNVISWSIMAGAHALHGN 140


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 332/572 (58%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           + + +  ++ L+    +++ A  LF  +PK ++  W+ LI  Y  N  YE A+ L+  M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           D+ ++ D      VL ACA L+ ++ G  +H   V+ G E  + +  ALI MY+      
Sbjct: 169 DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYA------ 222

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG V  AR +FD ++ +D V W++M++ Y+Q+  
Sbjct: 223 -------------------------KCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
               LSL  EM   G+RP EATLV+ ISA     AL QG+ +H    +   + +  + T 
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTA 317

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G V  A  +F     K V SWNA+I G+AM+G A ++L++F EM +    P+
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPD 376

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ITFVGVL AC H GL++EG   F +MI++++++P  +HY CMVDLLG +G L EA  LI
Sbjct: 377 HITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLI 436

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             M + PD   WGALL +CK H + E+GE    +L+EL+PD  G +V+LSNI+A  G+W+
Sbjct: 437 MQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWE 496

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V ++R +M  R + K   CS IE    +H FL+GD +HP  +EI + L+ +   +K  G
Sbjct: 497 GVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAG 556

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y+P T  V  D++ +EK   +  HSE+LAIAFGLI+  P   + I KNLRIC DCH A K
Sbjct: 557 YSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIK 616

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           FIS+  +REI VRD +R+HHFK G CSC D+W
Sbjct: 617 FISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
           AG   D +    +++ Y  C S+  AR LFD + + ++  W+ +I GYA +  +   + L
Sbjct: 104 AGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQL 163

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           + +M  +G+ PD  T   V+ AC  L A++ G+ IH ++ + G + +  +G  LIDMY K
Sbjct: 164 YYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAK 223

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            GCV +A EVF     +    WN+++  ++ NG  D  L + SEM  +G+ P E T V  
Sbjct: 224 CGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTA 283

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           + A      + +G R  + +      E + K    +VD+  + G ++ A  L E + +  
Sbjct: 284 ISASADNAALPQG-RELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVK- 341

Query: 594 DVATWGALLGACKKHGDH----EMGERVGRKLVELQPDHDGFHVLLS 636
            V +W A++     HG      ++ E + R     +PDH  F  +LS
Sbjct: 342 RVVSWNAMITGYAMHGHATEALDLFEEMNRV---AKPDHITFVGVLS 385



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 176/410 (42%), Gaps = 79/410 (19%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y  L Q+   R ++  GK +H  V  AGF  D  +   L+N+Y VC  LS+AR LFD  P
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKM------------P----------------- 224
             ++  WN ++ GY      E A  +Y +M            P                 
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 225 ----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                     E+++    ++I ++ + G V  A  +F ++  +D V W+++++ Y QN  
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
            +  L L   M+   +   E  +V+ +SA A+   +  G  +H L+ +   E +  ++ A
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTA 317

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY+ CG +  A  LF+      ++SWN+MI+G                         
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITG------------------------- 352

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
                 YA H   +E L LF EM     +PD  T V V+SAC+H   L++G W+      
Sbjct: 353 ------YAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEG-WMFFETMI 404

Query: 455 NGLKINSILG--TTLIDMYMKLGCVDNALEVFHGTE---EKGVSSWNALI 499
              KI+  +   T ++D+    G +D A  +    +   + GV  W AL+
Sbjct: 405 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGV--WGALL 452



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 154/319 (48%), Gaps = 46/319 (14%)

Query: 37  LQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           LQ C   ++ K   Q+ +Q+ L G   DT  A++L+           +S +  +F  +  
Sbjct: 82  LQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVC---DSLSSARLLFDRIPK 138

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N F++N ++R Y      + A+ LY  M +  +  DN+T+P + +A A   ++  G+ I
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY------ 207
           H+HV++ G++ DV+V   LI+MYA CG + +AR++FD+  V D V WNS+LA Y      
Sbjct: 199 HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHP 258

Query: 208 ---------------------------VNADNV------EEAKFIYNKMPERNIIASNSM 234
                                       +ADN       E     + +  E +     ++
Sbjct: 259 DACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTAL 318

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++ + G+V  A  LF+ +  K +VSW+A+I+ Y  +    EAL LF  M +     D 
Sbjct: 319 VDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDH 377

Query: 295 VVVVSVLSACANLTVVKAG 313
           +  V VLSAC++  +++ G
Sbjct: 378 ITFVGVLSACSHGGLLEEG 396



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 93/188 (49%), Gaps = 2/188 (1%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P  +   S++ +C    A+  GK +HA +   G   ++++ T L+++Y     + +A 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F    +  +  WN LI G+A NG  + +++++ +M   G+ P+  TF  VL AC  + 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            ++ G R  +  + +   E +      ++D+  + G +  A E+ + + +  D   W ++
Sbjct: 191 AIEHG-REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKI-LVRDAVLWNSM 248

Query: 602 LGACKKHG 609
           L A  ++G
Sbjct: 249 LAAYSQNG 256



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 20/268 (7%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I   ++ TG   D F  + LI           +  + ++F  +   +  ++N+M+ AY 
Sbjct: 197 EIHEHVVQTGWEKDVFVGAALIDMYAKCGC---VGSAREVFDKILVRDAVLWNSMLAAYS 253

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q   P   + L   M+   +     T      ASA   ++ +G+ +H    +  F+S   
Sbjct: 254 QNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDK 313

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V   L++MYA CG +  AR LF+   V  +VSWN+++ GY    +  EA  ++ +M   N
Sbjct: 314 VKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM---N 370

Query: 228 IIASNSMIVLFG-----RKGNVAEACRLFKEMPKKD------LVSWSALISCYEQNEMYE 276
            +A    I   G       G + E   +F E   +D      +  ++ ++     +   +
Sbjct: 371 RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLD 430

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           EA  L M M   +V+ D  V  ++L++C
Sbjct: 431 EAYNLIMQM---KVLPDSGVWGALLNSC 455


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/746 (35%), Positives = 385/746 (51%), Gaps = 82/746 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY--TYPLLAQASALRLSVFEGKLIHDH 156
           F   ++  I     +    L+ L + + V    Y   + LL  +   RLS       H H
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
                 D +V+  NTLI+ YA    +  A +LFDE P  D VS+N+++A Y    + + A
Sbjct: 71  ------DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 217 KFIYNKMPE----------RNIIAS---------------------------NSMIVLFG 239
             ++ +M E            II +                           N++I  + 
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 240 RKGNVAEACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           + G + EA R+F  + + +D VSW++++  Y Q+    +AL L++ M    ++VD   + 
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE-ITTAEKLFDAGHN 357
           SVL+A  N+  +  G   HA  +K G     ++ + LI +YS CG  +    K+FD   N
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL+ WN+MISGY          +L++                    D   E L  F ++
Sbjct: 305 PDLVLWNTMISGY----------SLYE--------------------DLSDEALECFRQL 334

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGC 476
           Q  G RPD+ +LV VISAC+++ +  QG+ +H    K  +  N I +   LI MY K G 
Sbjct: 335 QVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGN 394

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A  +F    E    S+N++I G+A +G+  +SL +F  M + G TP  ITF+ VL A
Sbjct: 395 LRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAA 454

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H G V++G  +FN M Q+  +EP + H+ CM+DLLGRAG L EAE LIE++P  P   
Sbjct: 455 CAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W ALLGAC+ HG+ E+  +   +L++L P +   +V+L+NI++  GR  D   VR +M 
Sbjct: 515 FWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMR 574

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            RGV K PGCS IE N  IH F+A D  HP I +I   L+EM +K+K  GY P+      
Sbjct: 575 DRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALV 634

Query: 717 DID----QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
             D    Q E+E  L  HSEKLA++FGL++     PI + KNLRIC DCH A K+IS   
Sbjct: 635 GGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVV 694

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            REI VRD HRFH FK G CSC  +W
Sbjct: 695 KREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 210/505 (41%), Gaps = 113/505 (22%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQ------------------------------- 108
            +S + ++F      N F FNT++ AY +                               
Sbjct: 58  RLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYAR 117

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV 168
           R   Q A  L+  M    + +D +T   +  A  + + +   + +H   +  G DS V V
Sbjct: 118 RGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSV 175

Query: 169 NNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
            N LI  Y+  G L  AR++F   S   D VSWNS++  Y+      +A  +Y +M  R 
Sbjct: 176 GNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRG 235

Query: 228 II---------------------------------------ASNSMIVLFGRKGNVAEAC 248
           +I                                         + +I L+ + G     C
Sbjct: 236 LIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDC 295

Query: 249 R-LFKEMPKKDLVSWSALISCYEQNE-MYEEALVLF--MNMIDHRVMVDEVVVVSVLSAC 304
           R +F E+   DLV W+ +IS Y   E + +EAL  F  + ++ HR   D+  +V V+SAC
Sbjct: 296 RKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHR--PDDCSLVCVISAC 353

Query: 305 ANLTVVKAGTSVHALAVKIGIEC-YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           +N++    G  VH LA+K+ I    I++ NALI MYS CG +  A+ LFD     + +S+
Sbjct: 354 SNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSY 413

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           NSMI+G                               YAQH    ++L LF  M   G  
Sbjct: 414 NSMIAG-------------------------------YAQHGMGFQSLHLFQRMLEMGFT 442

Query: 424 PDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           P   T +SV++AC H   ++ GK + +   +K G++  +   + +ID+  + G +  A  
Sbjct: 443 PTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAER 502

Query: 483 VFHGTE-EKGVSSWNALIIGFAMNG 506
           +      + G   W+AL+    ++G
Sbjct: 503 LIETIPFDPGFFFWSALLGACRIHG 527



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 56/390 (14%)

Query: 86  KIFAFL-ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +IF +L E  +   +N+M+ AY+Q     +A+ LY  M    + VD +T   +  A    
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD-LSAARKLFDESPVLDLVSWNSI 203
             +  G   H  ++K+G+  + +V + LI++Y+ CG  +   RK+FDE    DLV WN++
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 204 LAGY-VNADNVEEAKFIYNKM--------------------------------------- 223
           ++GY +  D  +EA   + ++                                       
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 224 -PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
            P   I  +N++I ++ + GN+ +A  LF  MP+ + VS++++I+ Y Q+ M  ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSS 341
             M++       +  +SVL+ACA+   V+ G    + +  K GIE      + +I +   
Sbjct: 434 QRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 342 CGEITTAEKL-----FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS--- 393
            G+++ AE+L     FD G       W++++      G+VE A    + +++ D ++   
Sbjct: 494 AGKLSEAERLIETIPFDPG----FFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           +  + + Y+ + +  +  S+   M+  G++
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVK 579


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 327/558 (58%), Gaps = 33/558 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           GN++ A   F ++       W+A+I  + Q+     A   + +MI     VD +    VL
Sbjct: 53  GNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVL 112

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA +        +H   V+ G      + +AL+                         
Sbjct: 113 KACARVLARLESIQIHTHIVRKGF-----IADALLG------------------------ 143

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
              +++  Y K G ++ A  +FD M+++D+ SW+ +ISG+AQ  + +E LSLF  M+  G
Sbjct: 144 --TTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDG 201

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
            +P+E +++  +SAC  L    +G+ IH YI+     +N+ +   +IDMY K G VD A 
Sbjct: 202 FKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAY 261

Query: 482 EVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            VF      K + +WN +I+ FAM+G   K+LE+F +M +SGV+P++++++ VL AC H 
Sbjct: 262 LVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHG 321

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV+EG R FNSM +   ++PN KHYG +VDLLGRAG L EA +++ SMP  PD+  W  
Sbjct: 322 GLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQT 380

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LLGA + H + E+ E V RKLVE+  +H G  VLLSN++A++ RW DV  VR  M  R V
Sbjct: 381 LLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDV 440

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K+PG S IE NG+IH+F   D++H    EI   LDE+  ++K  GY  +T  V  DI +
Sbjct: 441 KKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGE 500

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           E+KE  L  HSEKLA+AFGLI+ S   PI+++KNLRIC DCH   K IS+ +DREI+VRD
Sbjct: 501 EDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRD 560

Query: 781 RHRFHHFKHGSCSCMDFW 798
           R RFH FK G CSC D+W
Sbjct: 561 RVRFHRFKEGFCSCRDYW 578



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 1/240 (0%)

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
           L  G++  A   F  +       W+ +I G+ Q    +   + +  M     + D  T  
Sbjct: 50  LSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCS 109

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
            V+ AC  ++A  +   IH +I + G   +++LGTTL+D+Y K+G +D+A +VF    ++
Sbjct: 110 FVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKR 169

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            ++SWNALI GFA      ++L +F  M+  G  PNEI+ +G L AC  +G   EG +  
Sbjct: 170 DIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEK-I 228

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +  I+  R + N++    ++D+  + G + +A  + ESM    D+ TW  ++ A   HG+
Sbjct: 229 HGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGE 288



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 180/401 (44%), Gaps = 43/401 (10%)

Query: 31  SILETHLQKCQ--SFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF 88
           S L++ L KC   S     Q+ + +  TG      + +R        L    +S++   F
Sbjct: 3   SSLDSFLSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTF 62

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
           + + +P+   +N ++R +IQ   P  A   YK M++ +  VD  T   + +A A  L+  
Sbjct: 63  SQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARL 122

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           E   IH H+++ GF +D  +  TL+++YA  G++ +A K+FDE    D+ SWN++++G+ 
Sbjct: 123 ESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFA 182

Query: 209 NADNVEEAKFIYNKMP------------------------------------ER---NII 229
                 EA  ++ +M                                     ER   N  
Sbjct: 183 QGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQ 242

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             N +I ++ + G V +A  +F+ M  +KD+V+W+ +I  +  +    +AL LF  M   
Sbjct: 243 VCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQS 302

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  D+V  ++VL AC +  +V+ G  +       G++  +    +++ +    G +  A
Sbjct: 303 GVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEA 362

Query: 349 EKLFDAGHNL-DLISWNSMISGYLKCGSVEKARALFDAMIE 388
             + ++   + D++ W +++       +VE A  +   ++E
Sbjct: 363 YDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVE 403


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/773 (31%), Positives = 400/773 (51%), Gaps = 82/773 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEGKL---IH 154
           + TM+  Y Q     ++   + LM+ + N G  NY             S+ + +L   +H
Sbjct: 110 WTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLH 169

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR---------------------------- 186
             V K GF  +  + N+++ MY  CGD+  A                             
Sbjct: 170 ALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPY 229

Query: 187 ---KLFDESPVLDLVSWN-----------------------------------SILAGYV 208
              ++F+  P  D VSWN                                   S+L+   
Sbjct: 230 KALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACA 289

Query: 209 NADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +  +++    ++ ++       +++  N +I ++ + G +  A R+FK + + D +SW++
Sbjct: 290 STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNS 349

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           LI+      + E+AL+LF  M    V++DE ++ ++L  C+       G  +H   +K G
Sbjct: 350 LITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSG 409

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +     + NA+I MY+ CG+   A+ +F      + ISW +MI+ + + G + KAR  FD
Sbjct: 410 MGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFD 469

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M E+++V+W++M+S Y Q+    E L L++ M+ +G++PD  T  + I AC  L  +  
Sbjct: 470 MMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKL 529

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  +  +  K GL +N  +  +++ MY + G +  A   F   ++K + SWNA++  FA 
Sbjct: 530 GMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQ 589

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           NGL  K ++ F +M K+   PN I++V VL  C HMGLV EG  +F+SM +   + P ++
Sbjct: 590 NGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNE 649

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           H+ CMVDLLGRAG+L++A++LIE MP  P+   W ALLG+C+ H D  + E   +KL+EL
Sbjct: 650 HFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMEL 709

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
             +    +VLLSN+++  G  D+V ++R +M  +G+    GCS IE +  +H F   + +
Sbjct: 710 DVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETS 769

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HPQI E+   L+EM K ++  G     + V   + + +K      HSEKLA AFGL+ + 
Sbjct: 770 HPQIKEVYLKLEEMMKMIEDTG---KYITVESSVHRSKK-----YHSEKLAFAFGLLNLP 821

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
              PI +MKNLR+C+DCH   K +S    RE+++RD +RFHHFK G CSC D+
Sbjct: 822 SWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 248/530 (46%), Gaps = 66/530 (12%)

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           Y    Q S    S    + +H  ++ +G DS +++ N L++MY+ CG    A ++F E+ 
Sbjct: 11  YDAFKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETH 70

Query: 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253
             ++ +WN+++   V++  + +A+ ++++MP R                           
Sbjct: 71  HRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVR--------------------------- 103

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMI----DHRVMVDEVVVVSVLSACANLTV 309
              KD VSW+ +IS Y QN  +  +   F  MI    D     D     SV+ AC +L  
Sbjct: 104 --VKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGD 161

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            +    +HAL  K+G      +QN+++ MY  CG++  AE +F       L  WNSMI G
Sbjct: 162 SRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYG 221

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y +     KA  +F+ M E+D VSW+T+IS ++QH    + L++F+EM + G  P+  T 
Sbjct: 222 YSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTY 281

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            SV+SAC     L  G  +HA I +    ++ + G  LIDMY K GC+D A  VF    E
Sbjct: 282 GSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLRE 341

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG--- 546
               SWN+LI G    GL + +L +F++M++S V  +E     +LG C        G   
Sbjct: 342 HDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELL 401

Query: 547 HRHF------------NSMIQEH-------------RLEP--NSKHYGCMVDLLGRAGML 579
           H +             N++I  +             RL P  N+  +  M+    R+G +
Sbjct: 402 HGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDI 461

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER--VGRKLVELQPD 627
            +A    + MP   ++ TW ++L    ++G  E G +  V  +   +QPD
Sbjct: 462 GKARGYFDMMP-ERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPD 510



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 194/416 (46%), Gaps = 64/416 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  L   +   +N+++   +   + + A+ L+  M  ++V +D +  P +    +   
Sbjct: 334 RVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPD 393

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G+L+H + +K+G  S   V N +I MYA CGD   A  +F   P+ + +SW +++ 
Sbjct: 394 YASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMIT 453

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            +  + ++ +A+  ++ MPERNI+  NSM                               
Sbjct: 454 AFSRSGDIGKARGYFDMMPERNIVTWNSM------------------------------- 482

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +S Y QN   EE L L+++M  + V  D +   + + ACA+L +VK G  V   A K G+
Sbjct: 483 LSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGL 542

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              +++ N+++ MYS CG I  A+  FD+  + DLISWN+M++ + + G   K    F+ 
Sbjct: 543 SLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFED 602

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M++ +                                +P+  + VSV+S C+H+  + +G
Sbjct: 603 MLKTEC-------------------------------KPNHISYVSVLSGCSHMGLVAEG 631

Query: 446 K-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALI 499
           K +  +  R  G+   +   + ++D+  + G ++ A ++  G   K   + W+AL+
Sbjct: 632 KHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 306/477 (64%), Gaps = 2/477 (0%)

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G + +  ++N+LI  Y +CG++  A K+FD     D+ISW S++  Y + G +  A  +F
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                KD+V+W+ M++GYAQ+    + L +F  M   G+  DE +L   ISAC  L AL 
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           +  W+     + G   N ++G+ L+DMY K G +D A +VF+G +EK V +++++I G A
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 504 MNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
            +G A +++ +F EM  ++ V PN +TF+GVL AC H G+V EG  +F  M  ++ + P+
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPS 411

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
           + HY CMVDLLGRAG++ EA +L+ SM ++P    WGALLGAC+ HG  E+ + V   L 
Sbjct: 412 ADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF 471

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA-NGIIHEFLAG 681
           +L+P+  G +VLLSNI AS G+W++V +VR +M ++ + K P  S+ E  +G++H+F AG
Sbjct: 472 KLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAG 531

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D  HP+ +EI   L E+  KLKLEGY P    + +D++ EEKE  L  HSEKLA++FGL+
Sbjct: 532 DNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLL 591

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           T+     IRI+KNLRIC+DCH   + +SR    EI+VRD  RFHHFK+G CSC  FW
Sbjct: 592 TLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/511 (22%), Positives = 221/511 (43%), Gaps = 108/511 (21%)

Query: 83  YSFKIFAFLESPNGFIFNTMMR-AYIQRN--VPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           Y+  +F+ +  P+ F+   ++R A++ +   +P +     +      +    + +  LA+
Sbjct: 90  YALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAK 149

Query: 140 -ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            A+A R            VL  GFD   +V N+LI  Y  CGD+ AARK+FDE    D++
Sbjct: 150 SATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVI 209

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           SW SI+  Y  + ++  A+ ++ + P ++++A                            
Sbjct: 210 SWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVA---------------------------- 241

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
              W+A+++ Y QN M  +AL +F  M +  +++DEV +   +SACA L  ++    V  
Sbjct: 242 ---WTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQE 298

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           +A + G    + + + L+ MY+ CG I  A K+F      ++ +++SMI+G    G   +
Sbjct: 299 IAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASE 358

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A ALF  M+ +                                + P+  T + V++AC+H
Sbjct: 359 AIALFKEMVNRA------------------------------NVEPNHVTFIGVLTACSH 388

Query: 439 LVALDQGKWIHAYIR-KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
              + +G++  A ++ K G+  ++     ++D+  + G VD AL++              
Sbjct: 389 AGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDL-------------- 434

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
                               ++   VTP+   +  +LGACR       G      ++ EH
Sbjct: 435 --------------------VRSMSVTPHGGVWGALLGACR-----IHGKSEIAKVVAEH 469

Query: 558 --RLEPNS-KHYGCMVDLLGRAGMLKEAEEL 585
             +LEP S  +Y  + ++L  AG  +E  ++
Sbjct: 470 LFKLEPESIGNYVLLSNILASAGKWEEVSKV 500


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 347/586 (59%), Gaps = 15/586 (2%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALI-SCYEQNEMYEEALVLFM 283
           N    N++  L+   G  + A  LF ++P+  KD+  W+ L+ S  +      E    F 
Sbjct: 52  NTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFK 111

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    V++D+V ++SV   C  +  +  G       VK+G+   + + NA+++MY  CG
Sbjct: 112 EMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCG 171

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +    ++F   +  +++SW++++ G +K   VE  R +FD M E++ V W+ MI+GY  
Sbjct: 172 LVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVG 231

Query: 404 HDQFSETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINS 461
           +    E   L  EM     +  +  TL S++SAC     +  G+W+H Y  K  G +++ 
Sbjct: 232 NGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHI 291

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           ++GT L+DMY K G +D A +VF    ++ V +WNA++ G AM+G     L++F +M + 
Sbjct: 292 MVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEE 351

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
              P+++TF+ VL AC H GLVD+G+ +F S+  E+   P  +HY CMVD+LGRAG L+E
Sbjct: 352 -AKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEE 410

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A  LI+ MPM P+    G+LLG+C  HG  ++GER+ ++L+++   +  +HVLLSN++  
Sbjct: 411 AVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVL 470

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
           +G+ D    +R ++  +G+ K+PG S I   G IH+F AGD++HP   EI + L+ M ++
Sbjct: 471 EGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQR 530

Query: 702 LKLEGYAPDTLEVAF---------DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           L+L GY P+T    F           + EEKE  LF HSEKLA+ FG I+  P  P+ I 
Sbjct: 531 LRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIF 590

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLRIC DCH+A K +S+ ++REIV+RDR+RFH FKHGSCSC D+W
Sbjct: 591 KNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 195/464 (42%), Gaps = 107/464 (23%)

Query: 99  FNTMMRAYIQRNV-PQQAICLYKLMLNNNVGVDNYT----YPLLAQASALRLSVFEGKLI 153
           + T++ + +Q    P +    +K M    V +D+      + L  +   L +    G+  
Sbjct: 89  WTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGM----GRQA 144

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
              ++K G    V V N ++NMY  CG +   R++F E    ++VSW+++L G V  + V
Sbjct: 145 QGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGV 204

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
           E  + ++++MPERN                                V W+ +I+ Y  N 
Sbjct: 205 ENGRVVFDEMPERN-------------------------------EVGWTIMIAGYVGNG 233

Query: 274 MYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINL 331
              E  +L   M+   R+ ++ V + S+LSACA    V  G  VH  A+K +G E +I +
Sbjct: 234 FSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMV 293

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             AL+ MY+ CG I  A K+F      ++++WN+M+ G    G  +    +F  MIE+  
Sbjct: 294 GTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEE-- 351

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                                          +PD+ T ++V+SAC+H   +DQG   + Y
Sbjct: 352 ------------------------------AKPDDLTFMAVLSACSHSGLVDQG---YHY 378

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
            R                          +LE  +GT  K +  +  ++      G  +++
Sbjct: 379 FR--------------------------SLESEYGTTPK-IEHYACMVDILGRAGHLEEA 411

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           + +   +KK  + PNE+    +LG+C   G +  G R    +IQ
Sbjct: 412 VML---IKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQ 452



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 67/375 (17%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECY---INLQNALIHMYSSCGEITTAEKLFDAG 355
           S+L +CA  + +  G  +HA+ +  G+        L NAL H+Y+SCG  ++A  LF   
Sbjct: 20  SLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLF--- 76

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD-QFSETLSLF 414
                                +  R+       KDV  W+T+++   QH  + SE    F
Sbjct: 77  --------------------YQIPRS------HKDVTDWTTLLTSLVQHGTKPSEGFFFF 110

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            EM+  G+  D+  ++SV   CT +  L  G+     + K GL +   +   +++MY+K 
Sbjct: 111 KEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKC 170

Query: 475 GCVDNALEVFHGTEEKGVSSWNAL-------------------------------IIGFA 503
           G V+    VF    E+ V SW+ L                               I G+ 
Sbjct: 171 GLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYV 230

Query: 504 MNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
            NG + +   +  EM  +  +  N +T   +L AC   G V  G       ++    E +
Sbjct: 231 GNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMH 290

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
                 +VD+  + G +  A ++ + +P   +V  W A+LG    HG  +    +  K++
Sbjct: 291 IMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMI 349

Query: 623 -ELQPDHDGFHVLLS 636
            E +PD   F  +LS
Sbjct: 350 EEAKPDDLTFMAVLS 364



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 47/227 (20%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRL 145
           +F  +   N   +  M+  Y+     ++   L  +++L   +G++  T   +  A A   
Sbjct: 210 VFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSG 269

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            V  G+ +H + LK  G +  + V   L++MYA CG +  A K+F   P  ++V+WN++L
Sbjct: 270 DVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAML 329

Query: 205 AGY-----------VNADNVEEAK-----FI-------------------------YNKM 223
            G            +    +EEAK     F+                         Y   
Sbjct: 330 GGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTT 389

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISC 268
           P+    A   M+ + GR G++ EA  L K+MP    ++V  S L SC
Sbjct: 390 PKIEHYA--CMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSC 434


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/688 (34%), Positives = 370/688 (53%), Gaps = 76/688 (11%)

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
           H      + +V+  N LI  YA    +  A  LFD+ P  DLVS+N+++  Y +  +   
Sbjct: 64  HAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLS 123

Query: 216 AKFIYNKMPERNII-------------------------------------ASNSMIVLF 238
           A  ++ +M E  ++                                       NS++  +
Sbjct: 124 ALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYY 183

Query: 239 GRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
            + G + EA  +F  M +  +D VSW+++I  Y Q++   +AL L+ +M+     +D   
Sbjct: 184 SKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + SVL+  + +  +  G   HA A+K G     ++ + LI MY+ CG             
Sbjct: 244 LASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCG------------- 290

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS-ETLSLFM 415
                              + ++R +F+ +   D+V W+TMISGY+Q+ + S E L  F 
Sbjct: 291 -----------------AGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFR 333

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKL 474
           +MQ  G  PD+ + V  ISAC++L +  QGK  HA   K+ +  N I +   L+ MY K 
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKC 393

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A ++F    +    + N++I G+A +G+  +SL +F +M  + + P  IT V +L
Sbjct: 394 GNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSIL 453

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H G V+EG ++FN M     +EP ++HY CM+DLLGRAG L EAE LI++MP SP 
Sbjct: 454 SACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPG 513

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            A W ALLGAC+K+G+ E+ E+   + ++L+P +   +++L++++++  +W++   +R +
Sbjct: 514 SAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKL 573

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M  RG+ K PGCS IE N  +H F+A D +HP+I EI   LDEM  K+K  GY PD +  
Sbjct: 574 MRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPD-VRW 632

Query: 715 AFDIDQE----EKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           AF  D E    EKE  L  HSEKLA+AFGL+      P+ ++KNLRIC DCH A KF+S 
Sbjct: 633 AFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSA 692

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R+I VRD +RFH F+ G CSC D+W
Sbjct: 693 IARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 175/372 (47%), Gaps = 47/372 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY Q     +A+ LY+ M++    +D +T   +    +    +  G   H   +
Sbjct: 209 WNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAI 268

Query: 159 KAGFDSDVYVNNTLINMYAVCG-DLSAARKLFDESPVLDLVSWNSILAGYV-NADNVEEA 216
           K GF+ + +V + LI+MYA CG  +S +RK+F+E    DLV WN++++GY  N +   EA
Sbjct: 269 KTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEA 328

Query: 217 KFIYNKM----------------------------------------PERNIIASNSMIV 236
              + +M                                        P   I  +N+++ 
Sbjct: 329 LECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVT 388

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + GN+ +A +LF+ MP+ + V+ +++I+ Y Q+ +  E+L LF  M+   +    + 
Sbjct: 389 MYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSIT 448

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDA- 354
           +VS+LSACA+   V+ G     +   I GIE      + +I +    G+++ AE+L D  
Sbjct: 449 LVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTM 508

Query: 355 GHNLDLISWNSMISGYLKCGSV---EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
             +    +W +++    K G++   EKA   F  +   + V +  + S Y+   ++ E  
Sbjct: 509 PFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAA 568

Query: 412 SLFMEMQHHGIR 423
            +   M+  GIR
Sbjct: 569 RIRKLMRDRGIR 580



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 13/309 (4%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L +C     +  G S+H + +K  I     L N  I +YS C  +TTA   F+  H  +
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           + S+N++I+ Y K   +  A  LFD + + D+VS++T+I+ YA        LSLF EM+ 
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+  D  T   VI+AC + V L   + +H+    +G      +  +L+  Y K G ++ 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEE 191

Query: 480 ALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           A  VF+G  E  +   SWN++I+ +  +    K+L ++ +M   G   +  T   VL   
Sbjct: 192 AEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT- 250

Query: 538 RHMGLVDE--GHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGM-LKEAEELIESMPMSP 593
                V++  G   F++   +     N +H G  ++D+  + G  + E+ ++ E +  S 
Sbjct: 251 --FSCVEDLSGGLQFHAKAIKTGFNKN-RHVGSGLIDMYAKCGAGMSESRKVFEEICGS- 306

Query: 594 DVATWGALL 602
           D+  W  ++
Sbjct: 307 DLVVWNTMI 315



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           MS S K+F  +   +  ++NTM+  Y Q + +  +A+  ++ M       D+ ++     
Sbjct: 293 MSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAIS 352

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSD-VYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           A +   S  +GK  H   +K+   S+ + VNN L+ MY+ CG+L  ARKLF   P  + V
Sbjct: 353 ACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTV 412

Query: 199 SWNSILAGY-----------------------------------VNADNVEEAKFIYNKM 223
           + NSI+AGY                                    +   VEE K  +N M
Sbjct: 413 TLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMM 472

Query: 224 PERNIIASNS-----MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI-SC--YEQNEM 274
            +   I   +     MI L GR G ++EA RL   MP      +W+AL+ +C  Y   E+
Sbjct: 473 KDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMEL 532

Query: 275 YEEALVLFMNM 285
            E+A   F+ +
Sbjct: 533 AEKAANQFLQL 543



 Score = 39.7 bits (91), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 10/187 (5%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N    N+++  Y Q  +  +++ L++ ML  ++   + T   +  A A   
Sbjct: 401 KLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTG 460

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSI 203
            V EGK   + +    G + +    + +I++    G LS A +L D  P      +W ++
Sbjct: 461 RVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAAL 520

Query: 204 LAG---YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM-----P 255
           L     Y N +  E+A   + ++   N +    +  ++       EA R+ K M      
Sbjct: 521 LGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIR 580

Query: 256 KKDLVSW 262
           KK   SW
Sbjct: 581 KKPGCSW 587


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/756 (32%), Positives = 398/756 (52%), Gaps = 107/756 (14%)

Query: 150 GKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGY 207
           G+ +H  +L+    D D  V N+L+ +Y+ CG +++AR +FD    L D+VSW ++ +  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 208 VNADNVEEAKFIYNKMPERNIIAS------------------------------------ 231
                   +  +  +M E  ++ +                                    
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGT 186

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                +++I +  R G++A A ++F  + +K +V W+ LIS Y Q E  EEA+ LF++ +
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY--SSCGE 344
           +     D   + S++SAC  L  V+ G  +H+LA+++G+     +   L+ MY  S+ G+
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ 306

Query: 345 -ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE-KARALFDAMIEKDV----VSWST-- 396
            +  A K+F+     D+ISW ++ISGY++ G  E K  ALF  M+ + +    +++S+  
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 397 ---------------------------------MISGYAQHDQFSETLSLFMEM------ 417
                                            ++S YA+     E   +F ++      
Sbjct: 367 KSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 418 -----------QHHGIRPD----EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
                       H  +R D     +T  S+ISA   +  L +G+ +HA   K G   +  
Sbjct: 427 PCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRF 486

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           +  +L+ MY + G +++A   F+  +++ V SW ++I G A +G A+++L +F +M  +G
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V PN++T++ VL AC H+GLV EG  +F SM ++H L P  +HY CMVDLL R+G++KEA
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEA 606

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            E I  MP+  D   W  LLGAC+ H + E+GE   + +VEL+P     +VLLSN++A  
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADA 666

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G WD+V  +R  M    + K  G S +E     HEF AGD +HP+  +I   LD + +++
Sbjct: 667 GLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQI 726

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY PDT  V  D+  E KE  L +HSEK+A+AFGLIT S P PIRI KNLR+C DCH
Sbjct: 727 KGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCH 786

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +A K++S+A  REI++RD +RFH  K G CSC ++W
Sbjct: 787 SAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/784 (32%), Positives = 409/784 (52%), Gaps = 87/784 (11%)

Query: 61   DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
            D F A+ L+   T + PF     + ++F  L   N   F T+++ +  R   ++A  L++
Sbjct: 464  DLFCANVLLNMYTKVGPF---GSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQ 520

Query: 121  LMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-----IHDHVLKAGFDSDVYVNNTLINM 175
             +      V+ +        + L+L V    L     +H    K G D + +V + LI+ 
Sbjct: 521  RLRWEGHEVNQFVL-----TTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDA 575

Query: 176  YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------------ 223
            Y++CG +S AR++FD     D V+W ++++ Y   D  E    I++KM            
Sbjct: 576  YSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFAL 635

Query: 224  -----------------------------PERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
                                          ER++    +++ ++ + GN+ +A   F+ +
Sbjct: 636  TSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG--ALLDMYAKCGNIEDARLAFEMV 693

Query: 255  PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
               D++ WS +IS Y Q    E+A  LF+ M+   V  +E  + SVL ACAN+ ++  G 
Sbjct: 694  TNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGK 753

Query: 315  SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
             +H  A+KIG E  + + NALI +Y+ C ++ ++ ++F +  +++ +SWN++I GY K G
Sbjct: 754  QIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSG 813

Query: 375  SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
              E A                               LS+F EM+   +   + T  SV+ 
Sbjct: 814  FGEAA-------------------------------LSVFREMRAASVPSTQVTYSSVLR 842

Query: 435  ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            AC    +++    +H  I K+    ++I+  +LID Y K GC+ +A E+F   +E  + S
Sbjct: 843  ACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVS 902

Query: 495  WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
            WNA+I G+A++G A  + E+F  M K+ +  N+ITFV +L  C   GLV +G   F+SM 
Sbjct: 903  WNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMR 962

Query: 555  QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             +H +EP+ +HY C+V LLGRAG L +A   I  +P +P    W ALL +C  H + E+G
Sbjct: 963  LDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELG 1022

Query: 615  ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
                 K++E++P  +  +VLLSN++++ G  D V   R  M   GV K PG S +E  G 
Sbjct: 1023 RFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGE 1082

Query: 675  IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
            +H F  G   HP +  I+ ML+ +  K   EGY PDT EV  D+++E+K   L+ HSE+L
Sbjct: 1083 VHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERL 1142

Query: 735  AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
            A+A+GL+   P +PIRIMKNLR C DCH   K IS+   +EI+VRD +RFHHF+ G+CSC
Sbjct: 1143 ALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSC 1202

Query: 795  MDFW 798
             D+W
Sbjct: 1203 GDYW 1206



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 247/532 (46%), Gaps = 76/532 (14%)

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS--DVYVNNTLINMYAVCGDLSAA 185
           GVD+Y Y  L Q    R     G+ +H HV+++G  +  D++  N L+NMY   G   +A
Sbjct: 425 GVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSA 484

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
            ++FD  P  ++VS+ +++ G+      EEA  ++ ++                      
Sbjct: 485 HRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAM 544

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             +RN    +++I  +   G V++A R+F  +  KD V+W+A++
Sbjct: 545 DTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMV 604

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           SCY +N+  E  L +F  M      ++   + SVL A   L+ V  G  +HA +VK   +
Sbjct: 605 SCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYD 664

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
              ++  AL+ MY+ CG I  A   F+   N D+I W+ MIS Y +C   E+A       
Sbjct: 665 TERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQA------- 717

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
                                     LF+ M    + P+E +L SV+ AC ++  LD GK
Sbjct: 718 ------------------------FELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGK 753

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH +  K G +    +G  LID+Y K   ++++LE+F    +    SWN +I+G++ +G
Sbjct: 754 QIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSG 813

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE-GHRHFNSMIQEHRLEPNSKH 565
             + +L +F EM+ + V   ++T+  VL AC     ++  G  H   +I++     ++  
Sbjct: 814 FGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVH--CLIEKSTFNSDTIV 871

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
              ++D   + G +++A E+ E++    D+ +W A++     HG   M + +
Sbjct: 872 SNSLIDSYAKCGCIRDAREIFETLKEC-DLVSWNAIISGYAVHGQAAMAQEL 922



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 195/438 (44%), Gaps = 45/438 (10%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNK------MPERNIIASNSMIVLFGRKGNVAE 246
           P +D  ++  +L G V   +    + ++        +   ++  +N ++ ++ + G    
Sbjct: 424 PGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGS 483

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F  +P++++VS+  L+  +     +EEA  LF  +      V++ V+ +VL     
Sbjct: 484 AHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVA 543

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           +  +     VHA A K+G                               H+ +    +++
Sbjct: 544 MDTLGLAWGVHACACKLG-------------------------------HDRNAFVGSAL 572

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I  Y  CG V  AR +FD ++ KD V+W+ M+S Y+++D    TL +F +M+    + + 
Sbjct: 573 IDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNP 632

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             L SV+ A   L ++  GK IHA   K        +   L+DMY K G +++A   F  
Sbjct: 633 FALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEM 692

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
                V  W+ +I  +A     +++ E+F  M +S V+PNE +   VL AC +M L+D G
Sbjct: 693 VTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLG 752

Query: 547 ---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
              H H   +  E  L   +     ++DL  +   ++ + E+  S+    +V +W  ++ 
Sbjct: 753 KQIHNHAIKIGHESELFVGNA----LIDLYAKCSDMESSLEIFSSLRDVNEV-SWNTIIV 807

Query: 604 ACKKHGDHEMGERVGRKL 621
              K G  E    V R++
Sbjct: 808 GYSKSGFGEAALSVFREM 825



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 33  LETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           L + LQ C +        QI +  I  G  ++ F  + LI          +M  S +IF+
Sbjct: 736 LSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKC---SDMESSLEIFS 792

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            L   N   +NT++  Y +    + A+ +++ M   +V     TY  + +A A   S+  
Sbjct: 793 SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH 852

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
              +H  + K+ F+SD  V+N+LI+ YA CG +  AR++F+     DLVSWN+I++GY  
Sbjct: 853 VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAV 912

Query: 210 ADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM 254
                 A+ +++ M + +I A++    +++ + G  G V++   LF  M
Sbjct: 913 HGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSM 961


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/691 (34%), Positives = 373/691 (53%), Gaps = 73/691 (10%)

Query: 150 GKLIHDHVLKAGF---DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           G+ IH H+        DS V   N+LIN+Y  C ++S ARKLFD  P  ++VSW++++AG
Sbjct: 38  GRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAG 97

Query: 207 YVNADNVEEAKFIYNKM-------PERNIIAS---------------------------- 231
           Y+   N  E   ++ KM       P   +IA+                            
Sbjct: 98  YMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFH 157

Query: 232 ----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
               N++I L+ +  +V  A ++   +P  D+  ++ +++   Q+    EA+ +   +I 
Sbjct: 158 QYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIIS 217

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  +    V++   CA+L  +  G  VHA  +K  I+C + + +++I MY        
Sbjct: 218 EGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYG------- 270

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                   KCG+V   R  FD +  ++VVSW+++I+ Y Q++ F
Sbjct: 271 ------------------------KCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFF 306

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L+LF +M+   I P+E T+  + ++   L AL  G  +HA   K+GLK N ++G  L
Sbjct: 307 EEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNAL 366

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           I MY K G +  A  VF       + +WNA+I G + +GL  ++L MF +M  +G  PN 
Sbjct: 367 IIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNY 426

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +TF+GV+ AC H+ LVDEG  +FN ++++ R+ P  +HY C+V LL R+G L EAE  + 
Sbjct: 427 VTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMR 486

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           S  ++ DV +W  LL AC  H  ++ G ++   L++L+P   G ++LLSN+HA   RWD 
Sbjct: 487 SHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDH 546

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V+E+R +M  R V K PG S +E   + H F + D  HP+ N I   + ++  K++  GY
Sbjct: 547 VVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGY 606

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PD   V  DI+ E+K   L  HSEKLA+A+GL+      PI ++KNLR+C+DCHTA K 
Sbjct: 607 VPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKL 666

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+  +R IVVRD +RFHHF++G CSC D+W
Sbjct: 667 ISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 189/415 (45%), Gaps = 72/415 (17%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLA 138
           E+S + K+F  +   N   ++ +M  Y+Q   P +   L+K M + +N+  + Y      
Sbjct: 72  EVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAI 131

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            +   ++ V EGK  H + LK+G +   YV N LI +Y+ C D+ AA ++    P  D+ 
Sbjct: 132 SSCDSQMYV-EGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIF 190

Query: 199 SWNSILAGYVNADNVEEA----KFIYNKMPERN--------------------------- 227
            +N ++ G +   ++ EA    K I ++  E N                           
Sbjct: 191 CYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQM 250

Query: 228 --------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                   +   +S+I ++G+ GNV      F  +  +++VSW+++I+ Y QNE +EEAL
Sbjct: 251 LKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEAL 310

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            LF  M    +  +E  +  + ++ A L+ +  G  +HA A K G++  + + NALI MY
Sbjct: 311 NLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMY 370

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
              G+I  A+ +F      ++I+WN++I                               +
Sbjct: 371 FKSGDILAAQSVFSNMTCCNIITWNAII-------------------------------T 399

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           G++ H    E LS+F +M   G RP+  T + VI AC HL  +D+G +   ++ K
Sbjct: 400 GHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMK 454



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 205/447 (45%), Gaps = 57/447 (12%)

Query: 29  NLSILETHLQKC--QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           N  ++ T +  C  Q + +  Q     + +GL    +  + LI+  +      ++  + +
Sbjct: 123 NEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKC---SDVGAAIQ 179

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           I   +   + F +N ++   +Q     +A+ + KL+++  +  +N TY  + +  A    
Sbjct: 180 ILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKD 239

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H  +LK+  D DVY+ +++I+MY  CG++ + R  FD     ++VSW SI+A 
Sbjct: 240 ITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAA 299

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
           Y   +  EEA  +++KM                                        + N
Sbjct: 300 YFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGN 359

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           ++  N++I+++ + G++  A  +F  M   ++++W+A+I+ +  + + +EAL +F +M+ 
Sbjct: 360 VMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMA 419

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTS-----VHALAVKIGIECYINLQNALIHMYSSC 342
                + V  + V+ ACA+L +V  G       +    +  G+E Y      ++ + S  
Sbjct: 420 TGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHY----TCIVGLLSRS 475

Query: 343 GEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMI 398
           G +  AE    +   N D++SW ++++        +K R + + +++   +DV ++  + 
Sbjct: 476 GRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLS 535

Query: 399 SGYAQHDQFSETLSLFMEMQHHGIRPD 425
           + +A+  ++   + +   M+   ++ +
Sbjct: 536 NMHARVRRWDHVVEIRKLMRERNVKKE 562


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/761 (32%), Positives = 398/761 (52%), Gaps = 76/761 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  +   FA +  P  F+ N M+R +   ++P  A+  Y+ ML+     D +T+P++ +
Sbjct: 69  RMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLK 128

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A   ++ EG+  H  V+K G  +DVY  N+L+ +YA  G +  A ++FD  P  D+VS
Sbjct: 129 CCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVS 188

Query: 200 WNSILAGYVNADNVEEAKFIYNKMP----------------------------------- 224
           WN+++ GYV+      A   + +M                                    
Sbjct: 189 WNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYA 248

Query: 225 -----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                E+++    S++ ++ + GNV  A  +F +MP + +V+W+ +I  Y  NE   +A 
Sbjct: 249 IRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAF 308

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             FM M      V+ V  +++L+ACA       G SVHA  V+     ++ L+ AL+ MY
Sbjct: 309 DCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMY 368

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
              G++ ++EK                               +F  + +K +VSW+ MI+
Sbjct: 369 GKVGKVESSEK-------------------------------IFGQITDKTLVSWNNMIA 397

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y   + + E ++LF+E+ +  + PD  T+ +V+ A   L ++ Q K +H+YI K G   
Sbjct: 398 AYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGD 457

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           ++++   ++ MY + G +  + E+F     K V SWN +IIG+A++G    +LEMF EMK
Sbjct: 458 STLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMK 517

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            SG+ PNE TFV VL AC   GL  EG + FNSM QE+ + P  +HYGCM DLLGRAG L
Sbjct: 518 CSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGEL 577

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
           +E    IE+MP++P    WG+LL A +   D ++ E    ++ +L+ ++ G +V+LS+++
Sbjct: 578 REVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMY 637

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           A  GRW+DV  +R +M  +G+ +    S++E N     F+ GD +HPQ  +I    D ++
Sbjct: 638 ADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILS 697

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLF--RHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           + +   G   D+     D D     TT+   +HS +LA+AFGLI+    +P+ + KN+R+
Sbjct: 698 RNI---GEDLDSSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRV 754

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CN CH A K IS+   R+IVV D   +H F  GSC C D+W
Sbjct: 755 CNHCHHALKLISKYSGRKIVVGDTKIYHIFSDGSCCCGDYW 795



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 167/372 (44%), Gaps = 32/372 (8%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           S+I+     G + EA   F  + +      + +I  +   ++  +AL  +  M+D     
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D      VL  CA    +  G + HA  +K+G+   +   N+L+ +Y+  G +  AE++F
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D     D++SWN+M+ GY+  G    A A F  M +                        
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDA----------------------- 215

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
             +++ H     D   +++ ++AC    AL  G+ IH Y  ++GL+ +  +GT+L+DMY 
Sbjct: 216 --LQVGH-----DSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYC 268

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G V  A  VF     + V +WN +I G+A+N     + + F +M+  G     +T + 
Sbjct: 269 KCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAIN 328

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           +L AC        G      +++ H L P+      ++++ G+ G ++ +E++   +   
Sbjct: 329 LLTACAQTESSLFGRSVHAYVVRRHFL-PHVVLETALLEMYGKVGKVESSEKIFGQI-TD 386

Query: 593 PDVATWGALLGA 604
             + +W  ++ A
Sbjct: 387 KTLVSWNNMIAA 398


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/517 (43%), Positives = 315/517 (60%), Gaps = 37/517 (7%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS------------- 362
           +HAL VK+G++ Y  + NALI  Y++ G +  A ++FD   + D +S             
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 363 ------------------WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                             W SM++G  + G V  AR LF+ M  +D+VSW+ M+SG A +
Sbjct: 91  VVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGN 150

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL--KINSI 462
            +  E L LF  M   G  P+  T++S ++AC    AL+ GKWIHA++ +  L    +  
Sbjct: 151 RRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEF 210

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KS 521
           LGT L+DMY K G V+ AL+VF     +   +WNA+I G AMNG + K+L+MF +M+   
Sbjct: 211 LGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDR 270

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            V P+E+TFVGVL AC H G VD G  HF+ + +++ +    +HY CMVDLL R+G L+E
Sbjct: 271 TVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQE 330

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A ++I  MPM PD   W ALLG C+ H D +M E     + E++    G HVLLSN++A+
Sbjct: 331 AHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLSNLYAA 387

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
            GRW  V +VR  M  +G+ KIPGCS IE N  IHEF++GD++HP  N+I   L E++ +
Sbjct: 388 VGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISAR 447

Query: 702 LKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDC 761
           ++ +GY  +T EV +D+++EEKE  L  HSEKLAIAFGLI   P   IRI+KNLR C DC
Sbjct: 448 MQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADC 507

Query: 762 HTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           H  AK +S+ +  EIVVRDR RFHHF  G+CSC DFW
Sbjct: 508 HKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 176/374 (47%), Gaps = 36/374 (9%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  ++K G      V+N LI  YA  G +  AR++FD     D VS+NS++  +  + +
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 213 VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
           V  A+ ++ ++P    +   SM+    R G+VA A RLF+EMP +DLVSW+A++S    N
Sbjct: 91  VVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGN 150

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-- 330
               EAL LF  M+      +   V+S L+ACA    ++ G  +HA   +  +  + +  
Sbjct: 151 RRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEF 210

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEK 389
           L  AL+ MY+ CG +  A  +F    + +  +WN+MI+G    G   KA  +F  M +++
Sbjct: 211 LGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDR 270

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WI 448
            VV                               PDE T V V+ AC+H   +D G+   
Sbjct: 271 TVV-------------------------------PDEVTFVGVLLACSHGGFVDVGREHF 299

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGL 507
           H   +K G+++       ++D+  + G +  A ++  G   K     W AL+ G  ++  
Sbjct: 300 HMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKD 359

Query: 508 ADKSLEMFSEMKKS 521
              +    SEM+ +
Sbjct: 360 VKMAETAISEMEAT 373



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 56/322 (17%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           P   + N +++AY    +   A  ++  M +     D  ++  +  A A+   V   + +
Sbjct: 42  PYARVHNALIQAYAASGLVDDARRVFDGMSHR----DTVSFNSMIHAHAMSGDVVSARRL 97

Query: 154 HDHVLKAGFDSDVYVNNT-LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
            + V      S   V  T ++      GD++AAR+LF+E PV DLVSWN++++G      
Sbjct: 98  FERV-----PSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRR 152

Query: 213 VEEAKFIYNKM------PERNIIAS----------------------------------- 231
             EA  ++ +M      P R  + S                                   
Sbjct: 153 PVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLG 212

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRV 290
            +++ ++ + G V  A  +F ++  ++  +W+A+I+    N    +AL +F  M +D  V
Sbjct: 213 TALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTV 272

Query: 291 MVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           + DEV  V VL AC++   V  G    H +  K GI   +     ++ + +  G +  A 
Sbjct: 273 VPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAH 332

Query: 350 KLFDAGHNL--DLISWNSMISG 369
           K+  AG  +  D + W +++ G
Sbjct: 333 KII-AGMPMKPDAVVWRALLGG 353


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 338/586 (57%), Gaps = 34/586 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVVSVLSACA 305
           A RLF   P  D+   + LI    +++  + +L+ F+ M       +D      +L A A
Sbjct: 58  ARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAA 117

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD------------ 353
           +   +++G  +H  A+  G++ ++ +   L+ MYS CG +  A+K+F+            
Sbjct: 118 SYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNA 177

Query: 354 -----------AGHNL--------DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
                       G ++        +L SWN M++GY K G +E AR LF  M  KD VSW
Sbjct: 178 VVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSW 237

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           STMI G+A +  F E    F E+Q  G+RP+E +L   +SAC    A++ GK +H +I K
Sbjct: 238 STMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEK 297

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNGLADKSLE 513
           +G      +   L+D Y K G V  A  VF    EK  + SW ++I G AM+G  +++++
Sbjct: 298 SGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQ 357

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F EM++SG+ P+ I F+ +L AC H GL+++G+ +F  M   + +EP  +HYGCMVDL 
Sbjct: 358 LFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLY 417

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GRAG L +A E I  MP+ P    W  LLGAC  HG+ ++ ERV  +L EL P++ G HV
Sbjct: 418 GRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHV 477

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A  G+W DV  VR  M  + + K PG SMIE + I++ F+AG+  +    E   
Sbjct: 478 LLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYE 537

Query: 694 MLDEMAKKLKLEG-YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
            L E+  KL++EG Y P+   V  DI+ EEKE ++ RHSEKLA+AFG+  +   + IRI+
Sbjct: 538 KLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIV 597

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCHT  K IS+ +  EIVVRDR RFH FK GSCSC D+W
Sbjct: 598 KNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSIL-GTTLIDMYMKL-GCVDNALEVFHGTE 488
           S+++ C  L  L Q   +HAY+ K GL  + I+ G  L+   + +   +D A  +F    
Sbjct: 10  SLLTNCRSLKNLKQ---VHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFP 66

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEG- 546
              V   N LI G A +     SL  F EM++    P +  +F  +L A      ++ G 
Sbjct: 67  NPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGI 126

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             H  +++  H L+ +      +V +    G +  A+++ E M   P+V  W A++ AC 
Sbjct: 127 QLHCQAIV--HGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEM-FEPNVVAWNAVVTACF 183

Query: 607 KHGD 610
           + GD
Sbjct: 184 RCGD 187


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 385/746 (51%), Gaps = 82/746 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY--TYPLLAQASALRLSVFEGKLIHDH 156
           F   ++  I     +    L+ L + + V    Y   + LL  +   RLS       H H
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
                 D +V+  NTLI+ YA    +  A +LFDE P  D VS+N+++A Y    + + A
Sbjct: 71  ------DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 217 KFIYNKMPE----------RNIIAS---------------------------NSMIVLFG 239
             ++ +M E            II +                           N++I  + 
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 240 RKGNVAEACRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           + G + EA R+F  + + +D VSW++++  Y Q+    +AL L++ M    ++VD   + 
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE-ITTAEKLFDAGHN 357
           SVL+A  N+  +  G   HA  +K G     ++ + LI +YS CG  +    K+FD   N
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            DL+ WN+MISGY          +L++                    D   E L  F ++
Sbjct: 305 PDLVLWNTMISGY----------SLYE--------------------DLSDEALECFRQL 334

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGC 476
           Q  G RPD+ +LV VISAC+++ +  QG+ +H    K  +  N I +   LI MY K G 
Sbjct: 335 QGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGN 394

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           + +A  +F    E    S+N++I G+A +G+  +SL +F  M +   TP  ITF+ VL A
Sbjct: 395 LRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAA 454

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H G V++G  +FN M Q+  +EP + H+ CM+DLLGRAG L EAE LIE++P  P   
Sbjct: 455 CAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            W ALLGAC+ HG+ E+  +   +L++L P +   +V+L+NI++  GR  D   VR +M 
Sbjct: 515 XWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMR 574

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
            RGV K PGCS IE N  IH F+A D  HP I +I   L+EM +K+K  GY P+    + 
Sbjct: 575 DRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASV 634

Query: 717 DID----QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
             D    Q E+E  L  HSEKLA++FGL++     PI + KNLRIC DCH A K+IS   
Sbjct: 635 GGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVV 694

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
            REI VRD HRFH FK G CSC  +W
Sbjct: 695 KREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 140/554 (25%), Positives = 223/554 (40%), Gaps = 123/554 (22%)

Query: 41  QSFKQF--TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYS--------FKIFAF 90
            SF+QF  T I  + + TG           +  ST L     + YS         ++F  
Sbjct: 9   HSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 91  LESPNGFIFNTMMRAYIQ-------------------------------RNVPQQAICLY 119
               N F FNT++ AY +                               R   Q A  L+
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
             M    + +D +T   +  A  + + +   + +H   +  G DS V V N LI  Y+  
Sbjct: 129 LEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 180 GDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII--------- 229
           G L  AR++F   S   D VSWNS++  Y+      +A  +Y +M  R +I         
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 230 ------------------------------ASNSMIVLFGRKGNVAEACR-LFKEMPKKD 258
                                           + +I L+ + G     CR +F E+   D
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 259 LVSWSALISCYEQNE-MYEEALVLFMNM--IDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           LV W+ +IS Y   E + +EAL  F  +  + HR   D+  +V V+SAC+N++    G  
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQGVGHR--PDDCSLVCVISACSNMSSPSQGRQ 364

Query: 316 VHALAVKIGIEC-YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           VH LA+K+ I    I++ NALI MYS CG +  A+ LFD     + +S+NSMI+GY    
Sbjct: 365 VHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGY---- 420

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
                                      AQH    ++L LF  M      P   T +SV++
Sbjct: 421 ---------------------------AQHGMGFQSLHLFQRMLEMDFTPTNITFISVLA 453

Query: 435 ACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGV 492
           AC H   ++ GK + +   +K G++  +   + +ID+  + G +  A  +      + G 
Sbjct: 454 ACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGF 513

Query: 493 SSWNALIIGFAMNG 506
             W+AL+    ++G
Sbjct: 514 FXWSALLGACRIHG 527



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 56/390 (14%)

Query: 86  KIFAFL-ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
           +IF +L E  +   +N+M+ AY+Q     +A+ LY  M    + VD +T   +  A    
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD-LSAARKLFDESPVLDLVSWNSI 203
             +  G   H  ++K+G+  + +V + LI++Y+ CG  +   RK+FDE    DLV WN++
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 204 LAGY-VNADNVEEAKFIYNKM--------------------------------------- 223
           ++GY +  D  +EA   + ++                                       
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 224 -PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
            P   I  +N++I ++ + GN+ +A  LF  MP+ + VS++++I+ Y Q+ M  ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSS 341
             M++       +  +SVL+ACA+   V+ G    + +  K GIE      + +I +   
Sbjct: 434 QRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 342 CGEITTAEKL-----FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS--- 393
            G+++ AE+L     FD G       W++++      G+VE A    + +++ D ++   
Sbjct: 494 AGKLSEAERLIETIPFDPG----FFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           +  + + Y+ + +  +  S+   M+  G++
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVK 579


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/714 (33%), Positives = 373/714 (52%), Gaps = 64/714 (8%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML--NNNVGVDNYTYPLLAQASALR 144
           +FA +   +   +N ++  +       +A+ LY  +L   ++V     T   +  A++  
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                G+  H  +L+ GF  + +V + L+ MYA  G +  A+++FDE             
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDE------------- 200

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                             M  +N++  N+MI    R   V EA RLF+ M  +D ++W+ 
Sbjct: 201 ------------------MDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTT 242

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +++ + QN +  +AL  F  M    + +D+    S+L+AC  L+ ++ G  +HA  ++  
Sbjct: 243 MVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH 302

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
            +  + + +AL+ MYS                               KC S++ A   F 
Sbjct: 303 YDDNVFVGSALVDMYS-------------------------------KCRSIKPAETAFR 331

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M  K+++SW+ +I GY Q+    E + +F EMQ  GI PD+ TL SVIS+C +L +L++
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEE 391

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H     +GL     +   L+ +Y K G +++A  +F         SW AL+ G+A 
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A +++++F +M    V P+ +TF+GVL AC   G V++G  +F+SM ++H + P   
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDD 511

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DL  R+G LKEAEE I+ MPM PD   WG LL AC+  GD E+G+     L+E+
Sbjct: 512 HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEI 571

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P +   +VLL ++HA+KG W+ V ++R  M  R V K PGCS I+    +H F A D++
Sbjct: 572 DPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQS 631

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
           HP    I   L+ +  K+  EGY PD   V  D+   +K   +  HSEKLAIAFGL+ + 
Sbjct: 632 HPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVP 691

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PIRI+KNLR+C DCH A K IS+   R+I+VRD  RFH F +G CSC DFW
Sbjct: 692 HEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 172/384 (44%), Gaps = 44/384 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   + TM+  + Q  +  QA+  ++ M    + +D YT+  +  A     
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ +GK IH ++++  +D +V+V + L++MY+ C  +  A   F      +++SW +++ 
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIV 346

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
           GY      EEA  ++++M                                          
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 228 -IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            I  SN+++ L+G+ G++ +A RLF EM   D VSW+AL++ Y Q    +E + LF  M+
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKML 466

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
              V  D V  + VLSAC+    V+ G S  H++    GI    +    +I +YS  G +
Sbjct: 467 AKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRL 526

Query: 346 TTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGY 401
             AE+       + D I W +++S     G +E  +   + ++E D     S+  + S +
Sbjct: 527 KEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMH 586

Query: 402 AQHDQFSETLSLFMEMQHHGIRPD 425
           A    +++   L   M+   ++ +
Sbjct: 587 ATKGNWNQVAQLRRGMRDRQVKKE 610



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 152/335 (45%), Gaps = 35/335 (10%)

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
           +L N L+  Y   G    A ++FDA  + +L ++N+++S       ++   +LF +M ++
Sbjct: 42  HLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQR 101

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPDEATLVSVISACTHLVALDQGKW 447
           D VS++ +I+G++     +  + L+  +   G  +RP   T+ +++ A + L     G+ 
Sbjct: 102 DTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQ 161

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS-------------- 493
            H  I + G  +N+ +G+ L+ MY K+G + +A  VF   + K V               
Sbjct: 162 FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKM 221

Query: 494 -----------------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
                            +W  ++ GF  NGL  ++L  F  M+  G+  ++ TF  +L A
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +  +++G +    +I+ H  + N      +VD+  +   +K AE     M    ++ 
Sbjct: 282 CGALSALEQGKQIHAYIIRTH-YDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCK-NII 339

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           +W AL+    ++G  E   RV  ++     D D F
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDF 374


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 260/823 (31%), Positives = 410/823 (49%), Gaps = 113/823 (13%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI--- 107
           + +I TG   +T+ ++ L+K     L   +++ + K+F  +   N F  NTM+  YI   
Sbjct: 90  ASIIKTGFNPNTYRSNFLVK---SFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSG 146

Query: 108 ----------------------------QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
                                       Q N  ++A  L+  M  + +  D+ +   L  
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                 SV E + +H HV+K G+DS + V+N+L++ Y     L  A +LF++ P  D V+
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE---------------------------------- 225
           +N++L GY       EA  ++ KM E                                  
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 226 -----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 N+  +N+++  + +   V EA +LF EMP+ D +S++ L++CY  N   +E+L 
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 281 LFMNM----IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           LF  +     D R       ++S+ +   NL +   G  +H+  +       I + N+L+
Sbjct: 387 LFKELQFTGFDRRNF-PFATLLSIAAISLNLDI---GRQIHSQTIVTDAISEILVGNSLV 442

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+                               KCG   +A  +F  +  +  V W+ 
Sbjct: 443 DMYA-------------------------------KCGEFGEANRIFSDLAIQSSVPWTA 471

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MIS Y Q     + L LF+EMQ   I  D AT  S++ AC  L +L  GK +H++I  +G
Sbjct: 472 MISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSG 531

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
              N   G+ L+DMY K G + +AL++F     +   SWNALI  +A NG  D +L +F 
Sbjct: 532 YISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFE 591

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EM +SG+ P+ ++ + +L AC H GLV+EG ++F+SM + ++L P  +HY   +D+L R 
Sbjct: 592 EMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRG 651

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-HVLL 635
           G   EAE+L+  MP  PD   W ++L +C  H + E+ ++   +L  ++   D   +V +
Sbjct: 652 GRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTM 711

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SNI+A+ G WD+V +V+  M  RGV K+P  S +E     H F A D+THPQ+ EI   L
Sbjct: 712 SNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKL 771

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           DE+ +K+  +GY PD+     ++D+E K  +L  HSE++AIAF LI+    +PI +MKNL
Sbjct: 772 DELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNL 831

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R C DCH A K IS+   REI VRD  RFHHF+ G C+C D+W
Sbjct: 832 RACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 152/284 (53%), Gaps = 1/284 (0%)

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           LT  K    V A  +K G        N L+  +   G++  A KLFD   + ++ S N+M
Sbjct: 79  LTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTM 138

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I GY+K G++ +AR LFD+M ++  V+W+ +I GYAQ++QF E   LF+EM  HGI PD 
Sbjct: 139 IMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDH 198

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            +L +++S  T   ++++ + +H+++ K G     ++  +L+D Y K   +  A ++F+ 
Sbjct: 199 VSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFND 258

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+   ++NAL+ G++  G   +++ +F +M++ G  P E TF  +L A   +  ++ G
Sbjct: 259 IPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFG 318

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
            +  +  + +     N      ++D   +   + EA +L   MP
Sbjct: 319 -QQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP 361


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 327/554 (59%), Gaps = 4/554 (0%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+ + +  ++   W+A+I  Y     ++EA+ ++  M    +        ++L AC ++ 
Sbjct: 105 RVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMG 164

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G   HA   ++   C++ + N +I MY  CG I  A K+FD     D+ISW  +I+
Sbjct: 165 DLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIA 224

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y + G++E A  LF+++  KD+V+W+ M++G+AQ+ +  E L  F  M+  GIR DE T
Sbjct: 225 AYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVT 284

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINS--ILGTTLIDMYMKLGCVDNALEVFHG 486
           +   ISAC  L A           +K+G   +   ++G+ LIDMY K G V+ A+ VF  
Sbjct: 285 VAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVS 344

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDE 545
              K V S++++I+G A +G A ++L++F  M  ++ + PN +TFVG L AC H GLVD+
Sbjct: 345 MNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQ 404

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G + F SM Q   +EP   HY CMVDLLGRAG L+EA ELI++M + P    WGALLGAC
Sbjct: 405 GRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGAC 464

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + H + ++ E     L EL+PD  G ++LLSN+++S G W  VL VR ++  +G+ K P 
Sbjct: 465 RIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPA 524

Query: 666 CS-MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
            S +++ NG +H+F  G+  HP   +I + L+E+ ++L   GY PD   V +D+    K 
Sbjct: 525 VSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKR 584

Query: 725 TTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRF 784
             L +H+EKLA+AF L+T +    I+IMKNLR+C DCH   +  S    R I++RD  RF
Sbjct: 585 LILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRF 644

Query: 785 HHFKHGSCSCMDFW 798
           HHF+ G+CSC DFW
Sbjct: 645 HHFRSGACSCGDFW 658



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 206/474 (43%), Gaps = 66/474 (13%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           +S L + L  C +  Q  QI   ++  GL    +  ++LI+  T L   ++  Y  ++  
Sbjct: 50  VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMD-PYPRRVIE 108

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            ++  N F++  ++R Y       +AI +Y  M    +   ++T+  L +A      +  
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNL 168

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+  H    +      VYV NT+I+MY  CG +  ARK+FDE P  D++SW  ++A Y  
Sbjct: 169 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYAR 228

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
             N+E A  ++  +P ++++A  +M+  F                               
Sbjct: 229 VGNMESAADLFESLPTKDMVAWTAMVTGFA------------------------------ 258

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-- 327
            QN   +EAL  F  M    +  DEV V   +SACA L   K       +A K G     
Sbjct: 259 -QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 317

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
           ++ + +ALI MYS CG +  A  +F + +N ++ S++SMI G    G  ++A  LF  M+
Sbjct: 318 HVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMV 377

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
            +                                I+P+  T V  ++AC+H   +DQG+ 
Sbjct: 378 TQT------------------------------AIKPNTVTFVGALTACSHSGLVDQGRQ 407

Query: 448 IHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALI 499
           + A + +  G++      T ++D+  + G +  ALE+    + E     W AL+
Sbjct: 408 VFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALL 461



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           S F E+ H      E  + S+IS     + L+Q K IH ++ + GL  +  + T LI   
Sbjct: 37  STFSEISHQ----RELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTL 92

Query: 472 MKLGCVDNAL--EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            KLG   +     V    + +    W A+I G+ + G  D+++ M+  M+K  +TP   T
Sbjct: 93  TKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFT 152

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIE 587
           F  +L AC  MG ++ G R F++  Q  RL      Y    M+D+  + G +  A ++ +
Sbjct: 153 FSALLKACGSMGDLNLG-RQFHA--QTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD 209

Query: 588 SMPMSPDVATWGALLGACKKHGDHE 612
            MP   DV +W  L+ A  + G+ E
Sbjct: 210 EMP-ERDVISWTELIAAYARVGNME 233


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 357/605 (59%), Gaps = 37/605 (6%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           +++IL   V+   + E + ++  M +   + S      +IVL+ +   + +A  +F EMP
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           +K++VSW+A+IS Y Q     EAL LF+ M+      +     ++L++C      + G  
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H++A+K   E ++ + ++L+ MY+  G I                              
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRIC----------------------------- 243

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
              A  +F  + E+DVV+ + +ISGYAQ     E L LF ++Q  G+  +  T  SV++A
Sbjct: 244 --DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
            + L AL+ GK +H+++ ++G     +L  +LIDMY K G V  A  +F    E+   SW
Sbjct: 302 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 361

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           NA+++G++ +G+A + LE+F  M++   V P+ IT++ VL  C H  L D G   F +M+
Sbjct: 362 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMV 421

Query: 555 Q-EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
             +  +EP+  HYGC+VDLLGRAG ++EA + I+ MP  P  A WG+LLG+C+ H D E+
Sbjct: 422 NGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEI 481

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G  VG+KL+EL+P++ G +V+LSN++AS G+W+D+  +R +M  + V K PG S +E + 
Sbjct: 482 GIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQ 541

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
           I+H F A D THP+  E+   + E++ K K +GY PD   V +D+D+E+KE  L  HSEK
Sbjct: 542 IVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEK 601

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+AFGLI       IR++KNLRIC DCH+ AKF+SR + R +++RD++RFH+   G CS
Sbjct: 602 LALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCS 661

Query: 794 CMDFW 798
           C D+W
Sbjct: 662 CGDYW 666



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 177/408 (43%), Gaps = 59/408 (14%)

Query: 11  SSTIKSSVNAKPIFKPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASR 67
           S  +K ++    I    +     +T L +C   ++ ++  ++ + MI T  +   +  +R
Sbjct: 71  SGQLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTR 130

Query: 68  LIKF--STDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN 125
           LI      D L       + ++F  +   N   +  M+ AY QR    +A+ L+  ML +
Sbjct: 131 LIVLYNKCDCL-----GDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRS 185

Query: 126 NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
           +   +++T+  +  +    L    G+ IH   +K  ++S ++V ++L++MYA  G +  A
Sbjct: 186 DTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDA 245

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------------------ 227
             +F   P  D+V+  +I++GY      EEA  ++ ++                      
Sbjct: 246 HGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGL 305

Query: 228 ---------------------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                ++  NS+I ++ + GNV  A R+F  MP++  +SW+A++
Sbjct: 306 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 365

Query: 267 SCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV--KI 323
             Y ++ M  E L LF  M  +++V  D +  ++VLS C++  +   G  +    V  K 
Sbjct: 366 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 425

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS----WNSMI 367
           GIE  I     ++ +    G +   E+ FD    +  +     W S++
Sbjct: 426 GIEPDIGHYGCVVDLLGRAGRV---EEAFDFIKKMPFVPTAAIWGSLL 470


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 341/578 (58%), Gaps = 43/578 (7%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE---MYEEALVLFMNMIDHR 289
           S I+ F    ++  A R+F ++   +   W+ LI    Q++   +  EA++L+  M+   
Sbjct: 61  SRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRS 120

Query: 290 V-MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
               D      VL ACA L  +  G   HA  +K+G +  + + N+LIH Y+S       
Sbjct: 121 SPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYAS------- 173

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                   CGS+E A+ +FD M ++ +VSW+ MI  +    +F 
Sbjct: 174 ------------------------CGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFE 209

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKI---NSILG 464
             L LF++ Q     PD  T+ SVI+AC  L AL  G W HA++ +N G+ +   + ++ 
Sbjct: 210 TALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVN 269

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGV 523
            +L+DMY K G +D A ++F G ++  V+SWN++I+GFAM+G  + +LE F  M + S  
Sbjct: 270 NSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRF 329

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            PN ITFVGVL AC H  +V+EG ++F+ M+ E+++EP  +HYGC+VD+L RAG++ EA 
Sbjct: 330 VPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEAL 389

Query: 584 ELIESMPMSPDVATWGALLGA-CKKHGDHEMGERVGRKLVEL-QPDHDGFHVLLSNIHAS 641
           EL+ SMPM PDV  W +LL + CKK+   E+ E + R+++E  + D  G +VLLS ++AS
Sbjct: 390 ELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYAS 449

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
             RW+DV  VR +M   G++K PGCS+IE +G+ HEF AGD +HPQ  EI  +L+ + ++
Sbjct: 450 ASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEER 509

Query: 702 LKLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           +   GY PD  +    D     K  +L  HSE+LAIA GL+ + P  PIRI KNLR+C+D
Sbjct: 510 IDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDD 569

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CH     IS  F+ EI+VRDR RFHHFK GSCSCMD+W
Sbjct: 570 CHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 210/420 (50%), Gaps = 58/420 (13%)

Query: 25  KPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADT---FAASRLIKFSTDLLPFIEM 81
           KPT + ++L  HL +C+   Q  QI +  + + L   +   F  SR++ FS+      ++
Sbjct: 17  KPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSS----LHDL 72

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQR---NVPQQAICLYKLMLNNNVGV-DNYTYPLL 137
           +Y++++F  +++PN F++N ++RA  Q    ++ ++AI LY  ML  +    DN+T+P +
Sbjct: 73  NYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFV 132

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
            +A A   ++FEGK  H H+LK GF SDVY+NN+LI+ YA CG L +A+ +FD+ P   L
Sbjct: 133 LKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSL 192

Query: 198 VSWNSILAGYVNADNVEEA-------------------KFIYN----------------- 221
           VSWN+++  +V     E A                   + + N                 
Sbjct: 193 VSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAF 252

Query: 222 -------KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                   +   +++ +NS++ ++ + G++  A ++F+ M K D+ SW+++I  +  +  
Sbjct: 253 LLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGK 312

Query: 275 YEEALVLFMNMID-HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQ 332
            E AL  F  MI   R + + +  V VLSAC +  +V  G     + V +  IE  +   
Sbjct: 313 GELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHY 372

Query: 333 NALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMI-SGYLKCGSVEKARALFDAMIEKD 390
             L+ + +  G I  A +L  +     D++ W S++ S   K  SVE +  +   ++E +
Sbjct: 373 GCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESE 432



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 154/368 (41%), Gaps = 79/368 (21%)

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNV---EEAKFIYNKMPER----------- 226
           DL+ A ++FD+    +   WN ++     + +V    EA  +YN M +R           
Sbjct: 71  DLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFP 130

Query: 227 -----------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                                        ++  +NS+I  +   G++  A  +F +MP++
Sbjct: 131 FVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQR 190

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
            LVSW+A+I  +     +E AL LF+         D   + SV++ACA L  +  G   H
Sbjct: 191 SLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAH 250

Query: 318 ALAVK-IGIEC---YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           A  ++  G+     ++ + N+L+ MY  CG +  A ++F+     D+ SWNSMI G+   
Sbjct: 251 AFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMH 310

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G  E A   F+ MI                       +S F+        P+  T V V+
Sbjct: 311 GKGELALECFERMIR----------------------ISRFV--------PNSITFVGVL 340

Query: 434 SACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-G 491
           SAC H   +++G K+    + +  ++        L+D+  + G +D ALE+      K  
Sbjct: 341 SACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPD 400

Query: 492 VSSWNALI 499
           V  W +L+
Sbjct: 401 VVIWRSLL 408



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 153/335 (45%), Gaps = 48/335 (14%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECY---INLQNALIHMYSSCGEITTAEKLFDAGHN 357
           L+ C +++ +K    +HAL+++  +  +   + L + ++H +SS  ++  A ++FD   N
Sbjct: 29  LNECKDMSQLK---QIHALSLRSTLPNHSTTLFLYSRILH-FSSLHDLNYAYRVFDQVDN 84

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            +   WN +I    +  SV   R        + ++ ++TM                   +
Sbjct: 85  PNSFMWNILIRACAQSQSVHLKR--------EAILLYNTM-------------------L 117

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           Q     PD  T   V+ AC +L AL +GK  HA++ K G + +  +  +LI  Y   G +
Sbjct: 118 QRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSL 177

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           ++A  VF    ++ + SWNA+I  F + G  + +L++F + ++    P+  T   V+ AC
Sbjct: 178 ESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINAC 237

Query: 538 RHMGLVDEG---HRHF-----NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
             +  +  G   H         S+ ++H L  NS     ++D+  + G L  A ++ E M
Sbjct: 238 AGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNS-----LLDMYCKCGSLDIATQIFEGM 292

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
               DV +W +++     HG  E+      +++ +
Sbjct: 293 -QKHDVTSWNSMILGFAMHGKGELALECFERMIRI 326


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 342/571 (59%), Gaps = 5/571 (0%)

Query: 233  SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
            +++  +GR   + +A ++F EMP  + + W+  I    Q+E  ++ + LF  M    +  
Sbjct: 563  ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKA 622

Query: 293  DEVVVVSVLSAC-ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +   +V VL A  + L  +  G   H   ++ G +C + +  +LI MY     +T+A+ +
Sbjct: 623  ETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 682

Query: 352  FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM----IEKDVVSWSTMISGYAQHDQF 407
            FD   N ++ +WNS++SGY   G  E A  L + M    I+ D+V+W+ MISGYA     
Sbjct: 683  FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 742

Query: 408  SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
             E L+ F +MQ  G+ P+ A++  ++ AC  L  L +GK IH    +NG   +  + T L
Sbjct: 743  KEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATAL 802

Query: 468  IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
            IDMY K   + NA +VF   + K ++SWN +I+GFA+ GL  +++ +F+EM+K GV P+ 
Sbjct: 803  IDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDA 862

Query: 528  ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
            ITF  +L AC++ GL+ EG ++F+SMI ++R+ P  +HY CMVDLLGRAG L EA +LI 
Sbjct: 863  ITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIH 922

Query: 588  SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            +MP+ PD   WGALLG+C+ H + +  E   + L +L+P++   ++L+ N+++   RW+D
Sbjct: 923  TMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWED 982

Query: 648  VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
            +  +R +M   GV      S I+ N  +H F + ++ HP   +I   L ++  ++K  GY
Sbjct: 983  MDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGY 1042

Query: 708  APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
             PD   V  ++D+ EK+  L  H+EKLAI +GLI +    PIR++KN RIC+DCH+AAK+
Sbjct: 1043 VPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKY 1102

Query: 768  ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS    RE+ +RD  RFHHF+ G CSC DFW
Sbjct: 1103 ISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 190/417 (45%), Gaps = 61/417 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + +P   ++N  +   +Q    Q+ + L++ M  + +  +  T   + QAS   L
Sbjct: 579 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISEL 638

Query: 146 SVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
                GK  H +VL+ GFD DVYV  +LI+MY     L++A+ +FD     ++ +WNS++
Sbjct: 639 GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLV 698

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
           +GY      E+A  + N+M +  I                           K DLV+W+ 
Sbjct: 699 SGYSFKGMFEDALRLLNQMEKEGI---------------------------KPDLVTWNG 731

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +IS Y      +EAL  F  M    VM +   +  +L ACA+L++++ G  +H L+++ G
Sbjct: 732 MISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 791

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + +  ALI MYS    +  A K+F    N  L SWN MI G+          A+F 
Sbjct: 792 FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGF----------AIF- 840

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                          G  +     E +S+F EMQ  G+ PD  T  +++SAC +   + +
Sbjct: 841 ---------------GLGK-----EAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGE 880

Query: 445 G-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALI 499
           G K+  + I    +         ++D+  + G +D A ++ H    K  ++ W AL+
Sbjct: 881 GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 937



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 164/358 (45%), Gaps = 34/358 (9%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE-MYEEALVLFMNMIDH 288
           A+ ++I  +   G+   A  +F     ++ + W++ +  ++ +       L +F  +   
Sbjct: 458 AAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGK 517

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V+ D  V    L  C  +  +  G  +H   +K G +  + L+ AL++ Y         
Sbjct: 518 GVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYG-------- 569

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  +C  +EKA  +F  M   + + W+  I    Q ++  
Sbjct: 570 -----------------------RCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQ 606

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISAC-THLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           + + LF +MQ   ++ + AT+V V+ A  + L  L+ GK  H Y+ +NG   +  +GT+L
Sbjct: 607 KGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 666

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY+K   + +A  VF   + + + +WN+L+ G++  G+ + +L + ++M+K G+ P+ 
Sbjct: 667 IDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 726

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +T+ G++      G   E    F  M QE  + PNS    C++       +L++ +E+
Sbjct: 727 VTWNGMISGYAMWGCGKEALAFFAQMQQEGVM-PNSASITCLLRACASLSLLQKGKEI 783



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 133/309 (43%), Gaps = 13/309 (4%)

Query: 363 WN------SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY-AQHDQFSETLSLFM 415
           WN      ++IS YL  G    A  +F   + ++ + W++ +  + +        L +F 
Sbjct: 453 WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 512

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           E+   G+  D       +  CT ++ +  G  IH  + K G  ++  L   L++ Y +  
Sbjct: 513 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 572

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            ++ A +VFH         WN  II    +    K +E+F +M+ S +     T V VL 
Sbjct: 573 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 632

Query: 536 AC-RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
           A    +G ++ G +  +  +  +  + +      ++D+  +   L  A+ + ++M  + +
Sbjct: 633 ASISELGFLNMG-KETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRN 690

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           +  W +L+      G  E   R+  ++ +  ++PD   ++ ++S  +A  G   + L   
Sbjct: 691 IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISG-YAMWGCGKEALAFF 749

Query: 653 GMMVRRGVV 661
             M + GV+
Sbjct: 750 AQMQQEGVM 758


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/499 (43%), Positives = 318/499 (63%), Gaps = 18/499 (3%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +++ M +HRV  D      +L +  N   +  G   HA  +  G++    ++ +L++MYS
Sbjct: 49  VYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYS 108

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
           SCG++ +A+++FD   + DL +WNS+++ Y K G ++ AR LFD M E++V+SWS +I+G
Sbjct: 109 SCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLING 168

Query: 401 YAQHDQFSETLSLFMEMQ-----HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           Y    ++ E L LF EMQ        +RP+E T+ +V+SAC  L AL+QGKW+HAYI K 
Sbjct: 169 YVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKY 228

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEM 514
            ++I+ +LGT LIDMY K G ++ A  VF+    +K V +++A+I   AM GL D+  ++
Sbjct: 229 HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288

Query: 515 FSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           FSEM  S  + PN +TFVG+LGAC H GL++EG  +F  MI+E  + P+ +HYGCMVDL 
Sbjct: 289 FSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLY 348

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GR+G++KEAE  I SMPM PDV  WG+LL   +  GD +  E   ++L+EL P + G +V
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN++A  GRW +           G+ K+PGCS +E  G++HEF+ GD +  +   I  
Sbjct: 409 LLSNVYAKTGRWME-----------GINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 457

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           MLDE+ ++L+  GY  DT EV  D+++++KE  L  HSEKLAIAF L+   P  P+RI+K
Sbjct: 458 MLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIK 517

Query: 754 NLRICNDCHTAAKFISRAF 772
           NLRIC DCH     ++  F
Sbjct: 518 NLRICGDCHLTGLALAEIF 536



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 201/419 (47%), Gaps = 68/419 (16%)

Query: 97  FIFNTMMRAYIQR-NVPQQ--AICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           F++N ++RA +   + PQ+   I +Y  M N+ V  D +T+P L  +    L +  G+  
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  +L  G D D +V  +L+NMY+ CGDL +A+++FD+S   DL +WNS++  Y  A  +
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM--PKKDLVSWSALISCYEQ 271
           ++A+ ++++MPERN+I+ + +I  +   G   EA  LF+EM  PK               
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP-------------- 190

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           NE +              V  +E  + +VLSAC  L  ++ G  VHA   K  +E  I L
Sbjct: 191 NEAF--------------VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVL 236

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             ALI MY+ CG +  A+++F+A                   GS            +KDV
Sbjct: 237 GTALIDMYAKCGSLERAKRVFNA------------------LGS------------KKDV 266

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGK-WIH 449
            ++S MI   A +    E   LF EM     I P+  T V ++ AC H   +++GK +  
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFK 326

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNG 506
             I + G+  +      ++D+Y + G +  A E F  +   E  V  W +L+ G  M G
Sbjct: 327 MMIEEFGITPSIQHYGCMVDLYGRSGLIKEA-ESFIASMPMEPDVLIWGSLLSGSRMLG 384


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 311/505 (61%), Gaps = 40/505 (7%)

Query: 300  VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
            ++ ACA L  ++ G  +HA A K G    + +QN+L+H+Y +C                 
Sbjct: 810  LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC----------------- 852

Query: 360  LISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                          G  E A  +FD M    +++VSW++M++ +A + + +E L++F EM
Sbjct: 853  --------------GLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 898

Query: 418  QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
                  PD  T+VSV++AC    AL  G+ +H Y+ K GL  NS +   LID+Y K G V
Sbjct: 899  LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 958

Query: 478  DNALEVFHGTEEKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            ++A  +F   EE G    V SW +LI+G A NG   ++LE+FS M++  + P EIT VGV
Sbjct: 959  NDARRIF---EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 1015

Query: 534  LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
            L AC H GLVD+G R+F+ M +++ + P  +H GCMVDLLGRAG ++EA + I +MP+ P
Sbjct: 1016 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 1075

Query: 594  DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
            +   W  LLG+C  H   E+G+    +LVEL P H G +VLLSN++A+ G W DV  +R 
Sbjct: 1076 NAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRK 1135

Query: 654  MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
             MV+  V K PG S++E    ++EF+ GDR+HP+  +I  ML E+A++L+ EGY P T  
Sbjct: 1136 TMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSN 1195

Query: 714  VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
            V  DI++EEKET L  HSE+LAIAF L+   P  PIRI+KNLR+C DCH A   IS+ +D
Sbjct: 1196 VLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYD 1255

Query: 774  REIVVRDRHRFHHFKHGSCSCMDFW 798
            REI+VRDR RFHHF+ G+CSC D+W
Sbjct: 1256 REIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 47/340 (13%)

Query: 95   NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
            + F  NT++R       P+ A+ L++  L      D +TYP L QA A  L++ EG+ +H
Sbjct: 771  DPFPLNTVLRIAAGSPRPRVALELHRRRLALP---DTHTYPPLIQACARLLALREGECLH 827

Query: 155  DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGYVNADN 212
                K GF + V+V N+L+++Y  CG   +A K+FDE PV   +LVSWNS+L  +     
Sbjct: 828  AEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR 887

Query: 213  VEEAKFIYNKM------PE---------------------------------RNIIASNS 233
              E   ++ +M      P+                                  N   SN+
Sbjct: 888  PNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNA 947

Query: 234  MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
            +I L+ + G+V +A R+F+EM   + +VSW++LI     N   +EAL LF  M   +++ 
Sbjct: 948  LIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVP 1007

Query: 293  DEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMYSSCGEITTA-EK 350
             E+ +V VL AC++  +V  G      +    GI   I     ++ +    G +  A + 
Sbjct: 1008 TEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDY 1067

Query: 351  LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            +       + + W +++        +E  +  ++ ++E D
Sbjct: 1068 IITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELD 1107



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 34/221 (15%)

Query: 228  IIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNM 285
            +   NS++ L+G  G    A ++F EMP   ++LVSW+++++ +  N    E L +F  M
Sbjct: 839  VFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 898

Query: 286  IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
            +      D   +VSVL+ACA    +  G  VH    K+G+    ++ NALI +Y+ CG +
Sbjct: 899  LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 958

Query: 346  TTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
              A ++F+  G    ++SW S+I G                             +G+ + 
Sbjct: 959  NDARRIFEEMGLGRTVVSWTSLIVG--------------------------LAANGFGK- 991

Query: 405  DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                E L LF  M+   + P E T+V V+ AC+H   +D G
Sbjct: 992  ----EALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG 1028



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  T   +I AC  L+AL +G+ +HA   KNG      +  +L+ +Y   G  ++A +V
Sbjct: 802 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861

Query: 484 FHGTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           F     +G  + SWN+++  FA NG  ++ L +F EM      P+  T V VL AC   G
Sbjct: 862 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 921

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            +  G R  +  +++  L  NS     ++DL  + G + +A  + E M +   V +W +L
Sbjct: 922 ALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 980

Query: 602 LGACKKHG 609
           +     +G
Sbjct: 981 IVGLAANG 988


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/749 (32%), Positives = 411/749 (54%), Gaps = 45/749 (6%)

Query: 51  SQMILTGLIADTFAAS-RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQR 109
           ++++ T ++  +F  S  +++ ++ L+ +I + +  K  + L +P     N ++  +++ 
Sbjct: 8   AKLLTTKILPFSFQLSVSIVRTTSSLISYICL-FGTKKLSILTTPPS---NYLLSFHLRN 63

Query: 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
               +A  L+  M  ++ GV+ YT  +   A   RL     KL ++  +K     D+   
Sbjct: 64  GRIDEARSLFNKM--SSPGVNLYTMMIGGYADEGRLED-ALKLFYEMPVK-----DLISW 115

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII 229
           N+++     CGDL+ A  +FD+    ++VSW +I+ G +    VE A+ ++  MP +++ 
Sbjct: 116 NSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKDVT 175

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           A NSM+  F   G V +A  LF++MP ++++SW+++I   + N    EALV+F  M+   
Sbjct: 176 AWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLA-S 234

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
                  +   L+ACAN+     G  +H L VK G  C+    +A               
Sbjct: 235 FKATSSTLACALTACANICTPFIGVQIHGLIVKTGY-CFNEYISA--------------- 278

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
                          S+IS Y  C  ++ A ++F+  + ++VV W+ +++GY  + + ++
Sbjct: 279 ---------------SLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTD 323

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L +F  M    + P++++L S +++C  L A+D+G+ +HA   K GL+ +  +  +L+ 
Sbjct: 324 ALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVV 383

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G +++ + VF     K V SWN++I+G A +G    +L +F++M ++ V P+EIT
Sbjct: 384 MYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEIT 443

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
             G+L AC H G++ +G   F    +   +E  ++HY  MVDLLGR G L+EAE LI  M
Sbjct: 444 LAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIM 503

Query: 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649
           P   +   W ALL +   H +  + ER  + +++LQP+    + LLSN++AS G+W +V 
Sbjct: 504 PGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVS 563

Query: 650 EVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAP 709
           ++R  M   G++K PG S I   GI H F++GD++HP   +I   L+ +  KLK  GY P
Sbjct: 564 KIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVP 623

Query: 710 DTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           D      D++ E+KE  L  HSE+LAI FGLI+    + I +MKNLRIC DCH A K  S
Sbjct: 624 DPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTS 683

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   REIVVRD  RFHHF +G+CSC D+W
Sbjct: 684 KVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 44/261 (16%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           QI   ++ TG   + + ++ LI F  +    I+ + S  IF    S N  ++  ++  Y 
Sbjct: 260 QIHGLIVKTGYCFNEYISASLISFYANC-KLIDNASS--IFNDNVSRNVVVWTALLTGYG 316

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
                  A+ ++K M+  +V  +  +      +     +V  G+ +H    K G +SD++
Sbjct: 317 LNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIF 376

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           V+N+L+ MY  CG ++    +F      ++VSWNSI+ G         A  ++ +M    
Sbjct: 377 VSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTR 436

Query: 224 --PERNIIAS----------------------------------NSMIVLFGRKGNVAEA 247
             P+   +A                                   +SM+ L GR G + EA
Sbjct: 437 VDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEA 496

Query: 248 CRLFKEMP-KKDLVSWSALIS 267
             L   MP K + + W AL+S
Sbjct: 497 EALIHIMPGKANYMVWLALLS 517


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/712 (34%), Positives = 372/712 (52%), Gaps = 64/712 (8%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALRLS 146
           F  L   +G  +N ++  Y    +   A+  Y  M+ + +  +   T   + + S+    
Sbjct: 95  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V  GK IH  V+K GF+S + V + L+ MYA  G +S A+K                   
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK------------------- 195

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                       ++  + +RN +  NS++      G + +A +LF+ M +KD VSW+A+I
Sbjct: 196 ------------VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMI 242

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
               QN + +EA+  F  M    + +D+    SVL AC  L  +  G  +HA  ++   +
Sbjct: 243 KGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ 302

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
            +I + +ALI MY  C                             KC  +  A+ +FD M
Sbjct: 303 DHIYVGSALIDMYCKC-----------------------------KC--LHYAKTVFDRM 331

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            +K+VVSW+ M+ GY Q  +  E + +F++MQ  GI PD  TL   ISAC ++ +L++G 
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
             H     +GL     +  +L+ +Y K G +D++  +F+    +   SW A++  +A  G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
            A +++++F +M + G+ P+ +T  GV+ AC   GLV++G R+F  M  E+ + P+  HY
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHY 511

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CM+DL  R+G L+EA   I  MP  PD   W  LL AC+  G+ E+G+     L+EL P
Sbjct: 512 SCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDP 571

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
            H   + LLS+I+ASKG+WD V ++R  M  + V K PG S I+  G +H F A D + P
Sbjct: 572 HHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSP 631

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPP 746
            +++I   L+E+  K+   GY PDT  V  D+++  K   L  HSE+LAIAFGLI +   
Sbjct: 632 YLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSG 691

Query: 747 NPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            PIR+ KNLR+C DCH A K IS    REI+VRD  RFH FK G+CSC DFW
Sbjct: 692 QPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 248/483 (51%), Gaps = 43/483 (8%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K+IH ++++A    + ++ N +++ YA+    + AR++FD  P  +L SWN++L  Y  A
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
             + E +  + K+P+R+ +  N +I  +   G V  A + +  M                
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM---------------- 129

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
                         M D    +  V ++++L   ++   V  G  +H   +K+G E Y+ 
Sbjct: 130 --------------MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLL 175

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + + L++MY++ G I+ A+K+F    + + + +NS++ G L CG +E A  LF  M EKD
Sbjct: 176 VGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKD 234

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            VSW+ MI G AQ+    E +  F EM+  G++ D+    SV+ AC  L A+++GK IHA
Sbjct: 235 SVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHA 294

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            I +   + +  +G+ LIDMY K  C+  A  VF   ++K V SW A+++G+   G A++
Sbjct: 295 CIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEE 354

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY---- 566
           ++++F +M++SG+ P+  T    + AC ++  ++EG +     I    +     HY    
Sbjct: 355 AVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI-----HYVTVS 409

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--L 624
             +V L G+ G + ++  L   M +  D  +W A++ A  + G      ++  K+V+  L
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL 468

Query: 625 QPD 627
           +PD
Sbjct: 469 KPD 471



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 12/235 (5%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           + Y+  +F  ++  N   +  M+  Y Q    ++A+ ++  M  + +  D+YT      A
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   S+ EG   H   + +G    V V+N+L+ +Y  CGD+  + +LF+E  V D VSW
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPK 256
            ++++ Y       E   +++KM +  +    +    +I    R G V +  R FK M  
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500

Query: 257 K-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           +      +  +S +I  + ++   EEA+     M       D +   ++LSAC N
Sbjct: 501 EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM---PFPPDAIGWTTLLSACRN 552


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 379/717 (52%), Gaps = 43/717 (5%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           ++ K F+ +E P  F  N+M+  Y +      A+ L++ M   +V   N     L+Q+  
Sbjct: 215 FASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGR 274

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
            R ++     +H+  ++   DS  Y ++        C  LS+             + W  
Sbjct: 275 AREALSVAVDMHNRGVR--LDSTTYTSS-----LTACAKLSS-------------LGWGK 314

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW 262
            L   V              +P  +   +++M+ L+ + G   EA R+F  +  ++ VSW
Sbjct: 315 QLHAQV-----------IRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
           + LI  + Q   + E+L LF  M    + VD+  + +++S C+N   +     +H+L++K
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 323 IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL 382
            G    + + N+LI MY+ CG +  AE +F +    D++SW  M++ Y + G++ KAR  
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 383 FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVA 441
           FD M  ++V++W+ M+  Y QH    + L ++  M     + PD  T V++   C  + A
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
              G  I  +  K GL +++ +   +I MY K G +  A ++F     K + SWNA+I G
Sbjct: 544 NKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITG 603

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           ++ +G+  +++E+F +M K G  P+ I++V VL +C H GLV EG  +F+ + ++H + P
Sbjct: 604 YSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSP 663

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +H+ CMVDLL RAG L EA+ LI+ MPM P    WGALL ACK HG++E+ E   + L
Sbjct: 664 GLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHL 723

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            +L     G ++LL+ I+A  G+  D  +VR +M  +G+ K PG S +E    +H F A 
Sbjct: 724 FDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAE 783

Query: 682 DRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI 741
           D +HPQ+  I   LDE+ +K+   GY            + E   +   HSEKLA+AFG++
Sbjct: 784 DVSHPQVIAIREKLDELMEKIAQLGYV-----------RTESLRSEIHHSEKLAVAFGIM 832

Query: 742 TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +    PI IMKNLRIC DCHT  K IS    RE V+RD  RFHHFK GSCSC D+W
Sbjct: 833 NLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 225/492 (45%), Gaps = 62/492 (12%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++  G  S V++ NTL++ Y  CG L  AR L                         
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGL------------------------- 85

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                +   + E N+I  N M+  + + G++++A  LF  MP++D+ SW+ L+S Y Q+ 
Sbjct: 86  -----LRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSG 140

Query: 274 MYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            + +A+  F++M      + +       + +C  L   +    +  L  K G +   ++ 
Sbjct: 141 RFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA 200

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
             ++ M+  CG +  A K F       +   NSM++GY K   V+ A  LF++M E+DVV
Sbjct: 201 TGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVV 260

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           SW+ M+S  +Q  +  E LS+ ++M + G+R D  T  S ++AC  L +L  GK +HA +
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQV 320

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            ++   I+  + + ++++Y K GC   A  VF    ++   SW  LI GF   G   +SL
Sbjct: 321 IRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESL 380

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACR-----------HMGLVDEGHRHF----NSMIQEH 557
           E+F++M+   +T ++     ++  C            H   +  GH       NS+I  +
Sbjct: 381 ELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMY 440

Query: 558 RLEPNSKH---------------YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
               N ++               +  M+    + G + +A E  + M  + +V TW A+L
Sbjct: 441 AKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMS-TRNVITWNAML 499

Query: 603 GACKKHGDHEMG 614
           GA  +HG  E G
Sbjct: 500 GAYIQHGAEEDG 511



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 193/422 (45%), Gaps = 66/422 (15%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   K  S     Q+ +Q+I +    D + AS +++       F E   + ++F+ L   
Sbjct: 302 TACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKE---ARRVFSSLRDR 358

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +  ++  ++Q     +++ L+  M    + VD +    +    + R+ +   + +H
Sbjct: 359 NTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLH 418

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              LK+G    V ++N+LI+MYA CG+L  A  +F      D+VSW  +L  Y    N+ 
Sbjct: 419 SLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIG 478

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+  ++ M  RN+I                               +W+A++  Y Q+  
Sbjct: 479 KAREFFDGMSTRNVI-------------------------------TWNAMLGAYIQHGA 507

Query: 275 YEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
            E+ L ++  M+  + V+ D V  V++   CA++   K G  +    VK+G+    ++ N
Sbjct: 508 EEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMN 567

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           A+I MYS CG I+ A K+FD     DL+SWN+MI+GY + G  ++A  +FD M++K    
Sbjct: 568 AVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKK---- 623

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                      G +PD  + V+V+S+C+H   + +GK+    ++
Sbjct: 624 ---------------------------GAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLK 656

Query: 454 KN 455
           ++
Sbjct: 657 RD 658


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/746 (33%), Positives = 387/746 (51%), Gaps = 77/746 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+++  Y Q     + + L+K    +++ +D +T+          L +  G+LIH  + 
Sbjct: 9   WNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALIT 68

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            +G    V + N+LI+MY  CG +  AR +F+ +  LD VSWNS++AGYV   + +E   
Sbjct: 69  VSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLR 128

Query: 219 IYNKMPER-----------------------------------------NIIASNSMIVL 237
           +  KM                                            +++   +++  
Sbjct: 129 LLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDT 188

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ-----NEMYEEALVLFMNMIDHRVMV 292
           + + G++ +A ++FK MP  ++V ++A+I+ + Q     +E   EA+ LF  M    +  
Sbjct: 189 YAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKP 248

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            E    S+L AC+ +   + G  +HA   K  ++    + NAL+ +YS  G I       
Sbjct: 249 SEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDG---- 304

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                             LKC         F +  + DVVSW+++I G+ Q+ QF   L+
Sbjct: 305 ------------------LKC---------FHSTPKLDVVSWTSLIVGHVQNGQFEGGLT 337

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           LF E+   G +PDE T+  ++SAC +L A+  G+ IHAY  K G+   +I+  + I MY 
Sbjct: 338 LFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYA 397

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D+A   F  T+   + SW+ +I   A +G A +++++F  MK SG+ PN ITF+G
Sbjct: 398 KCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLG 457

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
           VL AC H GLV+EG R+F  M ++H + PN KH  C+VDLLGRAG L EAE  I      
Sbjct: 458 VLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE 517

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
            D   W +LL AC+ H   + G+RV  +++EL+P+    +VLL NI+   G      E+R
Sbjct: 518 GDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIR 577

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            +M  RGV K PG S IE   ++H F+AGDR+HP    I   L+EM +++K   Y  + L
Sbjct: 578 NLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKL 637

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
                  + +  + +  HSEKLA+ FG+I++    P+R+MKNLR C  CH   K  SR  
Sbjct: 638 VSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLE 697

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           +REI++RD  RFH F+ GSCSC D+W
Sbjct: 698 NREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 231/547 (42%), Gaps = 116/547 (21%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY--PLLAQASALR 144
           +F   +  +   +N+++  Y++     + + L   ML + + +++Y     L A  S   
Sbjct: 98  VFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFS 157

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S+  GK++H   +K G D DV V   L++ YA  GDL  A K+F   P  ++V +N+++
Sbjct: 158 SSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMI 217

Query: 205 AGYVNADNV-----EEAKFIYNKMPERNIIAS---------------------------- 231
           AG++  + +      EA +++ +M  R +  S                            
Sbjct: 218 AGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIF 277

Query: 232 -----------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                      N+++ L+   G++ +  + F   PK D+VSW++LI  + QN  +E  L 
Sbjct: 278 KYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLT 337

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           LF  ++      DE  +  +LSACANL  VK+G  +HA A+K GI  +  +QN+ I MY+
Sbjct: 338 LFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYA 397

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG+I +A   F    N D++SW+ MI                               S 
Sbjct: 398 KCGDIDSANMTFKETKNPDIVSWSVMI-------------------------------SS 426

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKI 459
            AQH    E + LF  M+  GI P+  T + V+ AC+H   +++G ++     + +G+  
Sbjct: 427 NAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP 486

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N      ++D+                                   G A +  E  S + 
Sbjct: 487 NVKHSACIVDLL----------------------------------GRAGRLAEAESFIM 512

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGM 578
            SG   + + +  +L ACR     D G R    +I+   LEP  +  Y  + ++   AG+
Sbjct: 513 DSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIE---LEPEAAASYVLLYNIYNDAGI 569

Query: 579 LKEAEEL 585
              A E+
Sbjct: 570 QMPATEI 576



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 195/392 (49%), Gaps = 42/392 (10%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           MPK+++VSW++LIS Y Q   Y E + LF       + +D+    + LS C     ++ G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +HAL    G+   + L N+LI MY  CG I  A  +F++   LD +SWNS+I+GY++ 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           GS +                               E L L ++M  HG+  +   L S +
Sbjct: 121 GSND-------------------------------EMLRLLVKMLRHGLNLNSYALGSAL 149

Query: 434 SAC--THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
            AC      +++ GK +H    K GL ++ ++GT L+D Y K+G +++A ++F    +  
Sbjct: 150 KACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPN 209

Query: 492 VSSWNALIIGF-AMNGLAD----KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
           V  +NA+I GF  M  +AD    +++ +F EM+  G+ P+E TF  +L AC  +   + G
Sbjct: 210 VVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG 269

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  ++ I ++ L+ +      +V+L   +G +++  +   S P   DV +W +L+    
Sbjct: 270 -KQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLIVGHV 327

Query: 607 KHGDHEMGERVGRKLV--ELQPDHDGFHVLLS 636
           ++G  E G  +  +L+    +PD     ++LS
Sbjct: 328 QNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 153/350 (43%), Gaps = 48/350 (13%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNV-----PQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           KIF  +  PN  ++N M+  ++Q          +A+ L+  M +  +    +T+  + +A
Sbjct: 200 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 259

Query: 141 SALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
            +  +  FE GK IH  + K    SD ++ N L+ +Y++ G +    K F  +P LD+VS
Sbjct: 260 CS-TIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVS 318

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PERNIIA----------------------- 230
           W S++ G+V     E    +++++      P+   I+                       
Sbjct: 319 WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAI 378

Query: 231 ----------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                      NS I ++ + G++  A   FKE    D+VSWS +IS   Q+   +EA+ 
Sbjct: 379 KTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVD 438

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMY 339
           LF  M    +  + +  + VL AC++  +V+ G     +  K  GI   +     ++ + 
Sbjct: 439 LFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLL 498

Query: 340 SSCGEITTAEK-LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
              G +  AE  + D+G   D + W S++S      + +  + + + +IE
Sbjct: 499 GRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIE 548



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 11/229 (4%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C + + F    QI +Q+    L +D F  + L++  + L   IE     K F     
Sbjct: 257 LKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS-LSGSIE--DGLKCFHSTPK 313

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            +   + +++  ++Q    +  + L+  +L +    D +T  ++  A A   +V  G+ I
Sbjct: 314 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 373

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H + +K G  +   + N+ I MYA CGD+ +A   F E+   D+VSW+ +++        
Sbjct: 374 HAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCA 433

Query: 214 EEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKKD 258
           +EA  ++  M    I  ++     ++V     G V E  R F E+ KKD
Sbjct: 434 KEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYF-EIMKKD 481


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/533 (41%), Positives = 324/533 (60%), Gaps = 25/533 (4%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +P+++  S++ L++                N +D     D  V VS+ S      
Sbjct: 109 RLFPRLPRRNPHSFTFLLAS-------------LSNHLD----ADPAVAVSIASRLM--- 148

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSMI 367
               G  VHALAVK G    + ++NALIH Y  CG++    K+FD    + D+++WN+++
Sbjct: 149 ----GAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVL 204

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +GY++ G V  AR +FD M  +D VSWST++ GY +  +    L +F  M   G++ +EA
Sbjct: 205 AGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEA 264

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +V+ +SA   L  L+QGK++H  I++ G+ ++  LG  L+DMY K G V  A EVF   
Sbjct: 265 AIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAM 324

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             + V +WN++I G A +GL   ++++F +    G  P  ITFVGVL AC   GLVDEG 
Sbjct: 325 PWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGR 384

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
            +F  M +++ +E   +HYGCMVDLL RAG+++EA ELIE M + PD   WG +L ACK+
Sbjct: 385 WYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKR 444

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG  ++G  VG KL+EL P HDG++VLL++I+A   +WD+V +VR +M  RG  K  G S
Sbjct: 445 HGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWS 504

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
           ++EA+GI+H+FL GD  H    +I NML  + ++L   GY PD   V  DI  EEK   +
Sbjct: 505 LMEAHGIVHKFLVGDMDHKDSVQIYNMLCMIDRRLAEAGYVPDVSSVLHDIGDEEKVHAI 564

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
             HSE+LAIA+G I +   +PIRI+KNL +C DCH  +K +++ F REI+VRD
Sbjct: 565 KVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIIVRD 617



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHV 157
           ++T++  Y++    + A+ ++K M+   V   N    + A ++A +L + E GK +H+ +
Sbjct: 231 WSTVVGGYVKEGELEVALGVFKNMVVQGVKA-NEAAIVTALSAAAQLGLLEQGKFVHEVI 289

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
            +AG    + +   L++MY+ CG ++AA+++FD  P  D+ +WNS++ G        +A 
Sbjct: 290 KRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAV 349

Query: 218 FIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMPKK-----DLVSWSALISC 268
            ++ K        +N   V       R G V E    FK M +K     ++  +  ++  
Sbjct: 350 QLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDL 409

Query: 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
             +  + +EA+ L   M    +  D V+  +VLSAC    +V  G +V
Sbjct: 410 LSRAGLVQEAIELIEGM---HIPPDPVLWGTVLSACKRHGLVDLGITV 454


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 390/715 (54%), Gaps = 66/715 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  ++  N F ++ ++  Y+Q  + Q+A+ +YK M+   + +D YT   +  A    L
Sbjct: 3   QVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLL 62

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V EG+++     + GF+ DV V  +LI+++A CG L                       
Sbjct: 63  DVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCL----------------------- 99

Query: 206 GYVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                   EEA+ ++  M   R+II+  +MI  +   G++ ++  LF  M  KD+VSW+A
Sbjct: 100 --------EEAESVFRSMGAMRDIISVTAMIGAYC--GSLKDSKSLFLTMDVKDVVSWNA 149

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+ Y      ++A  LF  M       D     S+L ACA+   ++ G  +H   V+I 
Sbjct: 150 MIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLH---VRI- 205

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
                                 TA      G + D    N++IS Y +CGS+E AR  F 
Sbjct: 206 ----------------------TAR-----GFDRDFAMQNNLISMYTRCGSLESARRYFY 238

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
           ++ +K++ +W+TM++ YAQ D+  + L L+  M   G  PD  T  SV+ +C  L AL +
Sbjct: 239 SIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALRE 298

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           GK+IH      G + + ILGT L++MY K G + +A + F G   K V SW+A+I   A 
Sbjct: 299 GKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQ 358

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
           +G A+++LE+   M   G+  NE+T   VL AC H G + EG  +F  + Q+  +E + +
Sbjct: 359 HGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEE 418

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           +    +DLLGRAG LKEAE ++ +MP          LLG CK HGD   G+   +++V L
Sbjct: 419 NTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVAL 478

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
           +P++ G +VLL+N++A+ GRWDDV ++R  M ++GV +  GCS IE    I+EF  GD +
Sbjct: 479 EPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTS 538

Query: 685 HPQINEIDNMLDEMAKKLK-LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +P+  EI   L+ +  ++K  EGY PDT +V  D+  ++KE  L  HSEK+A+ FGLIT 
Sbjct: 539 NPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITS 598

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            P + +RI+KNLR+C+DCHT  K  S+   R I+VRD  RFHHF+ G CSC D+W
Sbjct: 599 PPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 193/367 (52%), Gaps = 5/367 (1%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A ++F  + +++  SWS L+ CY QN MY+EAL ++  M+   + +D   + SVL+AC  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNS 365
           L  V+ G  V   A ++G E  + +  +LIH+++ CG +  AE +F + G   D+IS  +
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           MI  Y  CGS++ +++LF  M  KDVVSW+ MI+ Y  +    +  SLF  M   G  PD
Sbjct: 121 MIGAY--CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPD 178

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T  S++ AC     L+ G+ +H  I   G   +  +   LI MY + G +++A   F+
Sbjct: 179 IYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFY 238

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
             E+K + +WN ++  +A       +L ++  M   G TP+  TF  V+ +C  +G + E
Sbjct: 239 SIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALRE 298

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G +  +        E +      +V++  + G L +A++  + +  + DV +W A++ A 
Sbjct: 299 G-KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAAS 356

Query: 606 KKHGDHE 612
            +HG  E
Sbjct: 357 AQHGHAE 363



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 165/384 (42%), Gaps = 44/384 (11%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S  +F  ++  +   +N M+ AY      + A  L+  M       D YT+  +  A A 
Sbjct: 132 SKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACAS 191

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              + +G+++H  +   GFD D  + N LI+MY  CG L +AR+ F      +L +WN++
Sbjct: 192 PKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTM 251

Query: 204 LAGYVNADNVEEAKFIYNKM------PER------------------------------- 226
           LA Y   D  ++A F+Y  M      P+R                               
Sbjct: 252 LAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGF 311

Query: 227 --NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
             ++I   +++ ++ + G++A+A + F  +  KD+VSWSA+I+   Q+   EEAL L   
Sbjct: 312 EKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHL 371

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCG 343
           M    +  +EV   SVL AC++   +  G      L+   GIE         I +    G
Sbjct: 372 MNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAG 431

Query: 344 EITTAEK-LFDAGHNLDLISWNSMISGYLKCGSVEKARALFD---AMIEKDVVSWSTMIS 399
            +  AE  L      +  ++  +++ G    G V + +A      A+  ++  S+  + +
Sbjct: 432 WLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNN 491

Query: 400 GYAQHDQFSETLSLFMEMQHHGIR 423
            YA   ++ +   L   M+  G++
Sbjct: 492 MYAAAGRWDDVAKLRRYMRKKGVK 515


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/612 (35%), Positives = 356/612 (58%), Gaps = 37/612 (6%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEAC 248
           P +    ++++L   ++   + E + ++  M +   + +      +++ +G+   + +A 
Sbjct: 47  PEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDAR 106

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++  EMP+K++VSW+A+IS Y Q     EAL +F  M+      +E    +VL++C   +
Sbjct: 107 KVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRAS 166

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G  +H L VK   + +I + ++L+ MY+                            
Sbjct: 167 GLALGKQIHGLIVKWNYDSHIFVGSSLLDMYA---------------------------- 198

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
              K G +E+AR +F+ + E+DVVS + +I+GYAQ     E L +F  +Q  G+RP+  T
Sbjct: 199 ---KAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVT 255

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             S+++A + L  LD GK  H ++ +  L   ++L  +LIDMY K G +  A  +F    
Sbjct: 256 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP 315

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGH 547
           E+   SWNA+++G++ +GL  + LE+F  M+ +  V P+ +T + VL  C H  + D G 
Sbjct: 316 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGL 375

Query: 548 RHFNSMIQ-EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             ++ M+  E+ ++P+++HYGC+VD+LGRAG + EA E I+ MP  P     G+LLGAC+
Sbjct: 376 SIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 435

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H   ++GE VG +L+E++P++ G +V+LSN++AS GRW+DV  VR MM+++ V K PG 
Sbjct: 436 VHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGR 495

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S I+    +H F A DRTHP+  E+   + E++ K+K  GY PD   V +D+D+E+KE  
Sbjct: 496 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKM 555

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLA+ FGLIT     PIR+ KNLRIC DCH  AK  S+ F+RE+ +RD++RFH 
Sbjct: 556 LLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQ 615

Query: 787 FKHGSCSCMDFW 798
              G CSC D+W
Sbjct: 616 IVKGICSCGDYW 627



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 9/321 (2%)

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C+N  + +A   +  L  +IG  CY  L NA +   +          +    +       
Sbjct: 30  CSNGRLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLR 89

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
             ++  Y KC  +E AR + D M EK+VVSW+ MIS Y+Q    SE LS+F EM     +
Sbjct: 90  TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGK 149

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P+E T  +V+++C     L  GK IH  I K     +  +G++L+DMY K G ++ A E+
Sbjct: 150 PNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREI 209

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F    E+ V S  A+I G+A  GL +++LEMF  ++  G+ PN +T+  +L A   + L+
Sbjct: 210 FECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALL 269

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           D G +  +  +    L   +     ++D+  + G L  A+ L ++MP    + +W A+L 
Sbjct: 270 DHG-KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAI-SWNAMLV 327

Query: 604 ACKKHGDHEMGERVGRKLVEL 624
              KHG       +GR+++EL
Sbjct: 328 GYSKHG-------LGREVLEL 341



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 195/436 (44%), Gaps = 75/436 (17%)

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
           +F  SPN  +      + +  N   Q   L  +ML   +G   + Y  L  A   + ++ 
Sbjct: 11  SFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGF--HCYDALLNACLDKRALR 68

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EG+ +H H++K  +    Y+   L+  Y  C  L  ARK+ DE P  ++VSW ++++ Y 
Sbjct: 69  EGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 128

Query: 209 NADNVEEAKFIYNKM------P---------------------------------ERNII 229
              +  EA  ++ +M      P                                 + +I 
Sbjct: 129 QTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIF 188

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             +S++ ++ + G + EA  +F+ +P++D+VS +A+I+ Y Q  + EEAL +F  +    
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG 248

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  + V   S+L+A + L ++  G   H   ++  +  Y  LQN+LI MYS CG ++ A+
Sbjct: 249 MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQ 308

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +LFD       ISWN+M+ G                               Y++H    E
Sbjct: 309 RLFDNMPERTAISWNAMLVG-------------------------------YSKHGLGRE 337

Query: 410 TLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYI--RKNGLKINSILGTT 466
            L LF  M+    ++PD  TL++V+S C+H    D G  I+  +   + G+K ++     
Sbjct: 338 VLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGC 397

Query: 467 LIDMYMKLGCVDNALE 482
           ++DM  + G +D A E
Sbjct: 398 IVDMLGRAGRIDEAFE 413



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 167/373 (44%), Gaps = 52/373 (13%)

Query: 23  IFKPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLP 77
           +  P I     +  L  C   ++ ++  ++ + MI T  +  T+  +RL+ F    D L 
Sbjct: 44  MLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCL- 102

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
                 + K+   +   N   +  M+  Y Q     +A+ ++  M+ ++   + +T+  +
Sbjct: 103 ----EDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATV 158

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             +      +  GK IH  ++K  +DS ++V ++L++MYA  G +  AR++F+  P  D+
Sbjct: 159 LTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDV 218

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI----------------------------- 228
           VS  +I+AGY      EEA  ++ ++    +                             
Sbjct: 219 VSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCH 278

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                     +  NS+I ++ + GN++ A RLF  MP++  +SW+A++  Y ++ +  E 
Sbjct: 279 VLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREV 338

Query: 279 LVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVH--ALAVKIGIECYINLQNAL 335
           L LF  M D  RV  D V +++VLS C++  +   G S++   +A + GI+        +
Sbjct: 339 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCI 398

Query: 336 IHMYSSCGEITTA 348
           + M    G I  A
Sbjct: 399 VDMLGRAGRIDEA 411


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/753 (32%), Positives = 386/753 (51%), Gaps = 71/753 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +  ++  Y Q N  ++A  L+  M       D  T+  L        
Sbjct: 104 KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 163

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
              +   +   ++K G+DS + V NTL++ Y     L  A +LF E P +D VS+N+++ 
Sbjct: 164 MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMIT 223

Query: 206 GYVNADNVEEAKFIYNKMPER--------------------------------------- 226
           GY      E+A  ++ +M                                          
Sbjct: 224 GYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVW 283

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N+  SN+++  + +  +V +A +LF EMP++D VS++ +IS Y  +  ++ A  LF  + 
Sbjct: 284 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 343

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  +    ++LS  +N    + G  +HA  +                       +T
Sbjct: 344 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI-----------------------VT 380

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
           TA+         +++  NS++  Y KCG  E+A  +F  +  +  V W+ MIS Y Q   
Sbjct: 381 TADS--------EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 432

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + E L LF +M+   +  D+AT  S++ A   + +L  GK +H++I K+G   N   G+ 
Sbjct: 433 YEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSA 492

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+D+Y K G + +A++ F    ++ + SWNA+I  +A NG A+ +L+ F EM  SG+ P+
Sbjct: 493 LLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 552

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ++F+GVL AC H GLV+EG  HFNSM Q ++L+P  +HY  +VD+L R+G   EAE+L+
Sbjct: 553 SVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLM 612

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-HVLLSNIHASKGRW 645
             MP+ PD   W ++L AC+ H + E+  R   +L  ++   D   +V +SNI+A+ G+W
Sbjct: 613 AEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQW 672

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           ++V +V   M  RGV K+P  S +E     H F A DR HPQI EI   +D + K ++  
Sbjct: 673 ENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEEL 732

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT     + D++ K  +L  HSE+LAIAF LI+    +PI +MKNLR C DCH A 
Sbjct: 733 GYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAI 792

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+   REI VRD  RFHHF+ G CSC DFW
Sbjct: 793 KVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 163/308 (52%), Gaps = 4/308 (1%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           ++ A  VK G +   +  N  +  +   GE++ A +LF+   + + +S N MISGY+K G
Sbjct: 38  NIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 97

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           ++ +AR LFD M+E+  V+W+ +I GY+Q +QF E   LF++MQ  G  PD  T V+++S
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            C      +Q   +   I K G     I+G TL+D Y K   +D A ++F    E    S
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVS 217

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD-EGHRHFNSM 553
           +NA+I G++ +GL +K++ +F EM+ SG+ P E TF  VL  C ++GL D    +  +S 
Sbjct: 218 YNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSF 275

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           + +     N      ++D   +   + +A +L + MP   D  ++  ++      G H+ 
Sbjct: 276 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAWDGKHKY 334

Query: 614 GERVGRKL 621
              + R+L
Sbjct: 335 AFDLFREL 342



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 219/487 (44%), Gaps = 74/487 (15%)

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           Q+  LRL+V     I   ++K GFD D   +N  +  +   G+LS AR+LF+        
Sbjct: 27  QSPKLRLNVVNN--IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE-------- 76

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                  KMP +N +++N MI  + + GN+ EA +LF  M ++ 
Sbjct: 77  -----------------------KMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERT 113

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V+W+ LI  Y Q   ++EA  LF+ M       D V  V++LS C    +    T V  
Sbjct: 114 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 173

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             +K+G                               ++  LI  N+++  Y K   ++ 
Sbjct: 174 QIIKLG-------------------------------YDSRLIVGNTLVDSYCKSNRLDL 202

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A  LF  M E D VS++ MI+GY++     + ++LF+EMQ+ G++P E T  +V+ A   
Sbjct: 203 ACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIG 262

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L  +  G+ IH+++ K     N  +   L+D Y K   V +A ++F    E+   S+N +
Sbjct: 263 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 322

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEH 557
           I G+A +G    + ++F E++ +     +  F  +L    +    + G + H  +++   
Sbjct: 323 ISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 558 RLE---PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             E    NS     +VD+  + G  +EAE +  ++     V  W A++ A  + G +E G
Sbjct: 383 DSEILVGNS-----LVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAMISAYVQKGFYEEG 436

Query: 615 ERVGRKL 621
            ++  K+
Sbjct: 437 LQLFNKM 443



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 198/445 (44%), Gaps = 79/445 (17%)

Query: 45  QFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE---MSYSFKIFAFLESPNGFIFNT 101
           Q TQ+ +Q+I  G        SRLI  +T +  + +   +  + ++F  +   +   +N 
Sbjct: 167 QITQVQTQIIKLGY------DSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNA 220

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+  Y +  + ++A+ L+  M N+ +    +T+  +  A+     +  G+ IH  V+K  
Sbjct: 221 MITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTN 280

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------------- 207
           F  +V+V+N L++ Y+    +  ARKLFDE P  D VS+N I++GY              
Sbjct: 281 FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFR 340

Query: 208 -VNADNVEEAKFIYNKM------------------------PERNIIASNSMIVLFGRKG 242
            +     +  +F +  M                         +  I+  NS++ ++ + G
Sbjct: 341 ELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCG 400

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
              EA  +F  +  +  V W+A+IS Y Q   YEE L LF  M    V+ D+    S+L 
Sbjct: 401 KFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLR 460

Query: 303 ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           A A++  +  G  +H+  +K G    +   +AL+ +Y+ CG I  A + F    + +++S
Sbjct: 461 ASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVS 520

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           WN+MIS Y + G  E                                TL  F EM   G+
Sbjct: 521 WNAMISAYAQNGEAEA-------------------------------TLKSFKEMVLSGL 549

Query: 423 RPDEATLVSVISACTHLVALDQGKW 447
           +PD  + + V+SAC+H   +++G W
Sbjct: 550 QPDSVSFLGVLSACSHSGLVEEGLW 574


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 331/575 (57%), Gaps = 32/575 (5%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E +I+ SN +I ++ +   V  A + F EMP K LVSW+ +I    QN    EAL L + 
Sbjct: 75  EMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQ 134

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M       +E  + SVL  CA    +     +HA ++K  I+    +  AL+H+Y+    
Sbjct: 135 MQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYA---- 190

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      KC S++ A  +F++M EK+ V+WS+M++GY Q+
Sbjct: 191 ---------------------------KCSSIKDASQMFESMPEKNAVTWSSMMAGYVQN 223

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
               E L +F   Q  G   D   + S +SAC  L  L +GK +HA   K+G   N  + 
Sbjct: 224 GFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVS 283

Query: 465 TTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           ++LIDMY K GC+  A  VF G  E + +  WNA+I GFA +  A +++ +F +M++ G 
Sbjct: 284 SSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGF 343

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+++T+V VL AC HMGL +EG ++F+ M+++H L P+  HY CM+D+LGRAG++ +A 
Sbjct: 344 FPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAY 403

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           +LIE MP +   + WG+LL +CK +G+ E  E   + L E++P++ G H+LL+NI+A+  
Sbjct: 404 DLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANK 463

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +WD+V   R ++    V K  G S IE    IH F  G+R HPQI++I   LD +  +LK
Sbjct: 464 KWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELK 523

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
              Y  DT     D+++  K+  L  HSEKLAI FGL+ +    PIRI+KNLRIC DCHT
Sbjct: 524 KLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHT 583

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K +S++  REI+VRD +RFHHFK G CSC +FW
Sbjct: 584 FMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 193/420 (45%), Gaps = 75/420 (17%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           V N  Y  L Q  A   S   G+  H  +++ G + D+  +N LINMY+ C  + +ARK 
Sbjct: 43  VSNLHY--LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKK 100

Query: 189 FDESPVLDLVSWNSILAGYV-NADNVEEAKFIYNKMPE---------------------- 225
           F+E PV  LVSWN+++     NA++ E  K +     E                      
Sbjct: 101 FNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAI 160

Query: 226 ----------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                            N     +++ ++ +  ++ +A ++F+ MP+K+ V+WS++++ Y
Sbjct: 161 LECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGY 220

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329
            QN  +EEAL++F N        D  ++ S +SACA L  +  G  VHA++ K G    I
Sbjct: 221 VQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNI 280

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNL-DLISWNSMISGYLKCGSVEKARALFDAMIE 388
            + ++LI MY+ CG I  A  +F     +  ++ WN+MISG                   
Sbjct: 281 YVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISG------------------- 321

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KW 447
                       +A+H +  E + LF +MQ  G  PD+ T V V++AC+H+   ++G K+
Sbjct: 322 ------------FARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKY 369

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG 506
               +R++ L  + +  + +ID+  + G V  A ++         SS W +L+    + G
Sbjct: 370 FDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYG 429



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 1/270 (0%)

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           SS G      ++   G  +D+++ N +I+ Y KC  V+ AR  F+ M  K +VSW+T+I 
Sbjct: 58  SSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIG 117

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
              Q+ +  E L L ++MQ  G   +E T+ SV+  C    A+ +   +HA+  K  +  
Sbjct: 118 ALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDS 177

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  +GT L+ +Y K   + +A ++F    EK   +W++++ G+  NG  +++L +F   +
Sbjct: 178 NCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQ 237

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
             G   +       + AC  +  + EG +  +++  +     N      ++D+  + G +
Sbjct: 238 LMGFDQDPFMISSAVSACAGLATLIEG-KQVHAISHKSGFGSNIYVSSSLIDMYAKCGCI 296

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHG 609
           +EA  + + +     +  W A++    +H 
Sbjct: 297 REAYLVFQGVLEVRSIVLWNAMISGFARHA 326



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 40/264 (15%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +NT++ A  Q    ++A+ L   M       + +T   +    A + ++ E   +H   +
Sbjct: 112 WNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSI 171

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           KA  DS+ +V   L+++YA C  +  A ++F+  P  + V+W+S++AGYV     EEA  
Sbjct: 172 KAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALL 231

Query: 219 IYNKMP---------------------------------------ERNIIASNSMIVLFG 239
           I+                                             NI  S+S+I ++ 
Sbjct: 232 IFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYA 291

Query: 240 RKGNVAEACRLFKE-MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
           + G + EA  +F+  +  + +V W+A+IS + ++    EA++LF  M       D+V  V
Sbjct: 292 KCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYV 351

Query: 299 SVLSACANLTVVKAGTSVHALAVK 322
            VL+AC+++ + + G     L V+
Sbjct: 352 CVLNACSHMGLHEEGQKYFDLMVR 375



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   +++MM  Y+Q    ++A+ +++         D +       A A   
Sbjct: 200 QMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLA 259

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES-PVLDLVSWNSIL 204
           ++ EGK +H    K+GF S++YV+++LI+MYA CG +  A  +F     V  +V WN+++
Sbjct: 260 TLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMI 319

Query: 205 AGYVNADNVEEAKFIYNKMPER 226
           +G+       EA  ++ KM +R
Sbjct: 320 SGFARHARAPEAMILFEKMQQR 341


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/522 (41%), Positives = 311/522 (59%), Gaps = 31/522 (5%)

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
            A   F  M+    + ++     +L ACA    V  G   HA A+K G      + N LI
Sbjct: 129 RAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GVQAHAAALKFGFTTDQYVSNTLI 186

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           HMYS  G     E L DA                         R +FD M +   V+WS 
Sbjct: 187 HMYSCFG----GEFLGDA-------------------------RNVFDRMAKSSAVTWSA 217

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           MI GY +    S+ + LF EMQ  G+RPDE T++ V++A   L AL+  +W+  ++ K G
Sbjct: 218 MIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEG 277

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           +  +  L   LID   K G +D A+ VF G +E+ + SW ++I   AM G   +++ +F 
Sbjct: 278 IGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFE 337

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
           EMK +GV P+++ F+GVL AC H G+VDEG+ +F SM   + ++P  +HYGCMVD+ GRA
Sbjct: 338 EMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRA 397

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636
           GM++ A E +  MPM P+   W  L+ AC+ HG  E+GE + R L+   P H+  +V+LS
Sbjct: 398 GMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLS 457

Query: 637 NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLD 696
           N++A   RW +  E+R  M +RG+ K+PGCS++E +G +HEF+AGD +HPQ  EI  M++
Sbjct: 458 NVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVE 517

Query: 697 EMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           EMA++L+  G+   T EV  D+D+E+KE  L  HSEKLAIAF L+   P   +R++KNLR
Sbjct: 518 EMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLR 577

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +C+DCH A K IS  ++REI+VRDR RFH FK+GSCSC DFW
Sbjct: 578 VCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/474 (22%), Positives = 202/474 (42%), Gaps = 66/474 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L++  +     Q L+ ++ +GL A+    +RL   S    P +       +       + 
Sbjct: 49  LERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLVPSVPIDA 108

Query: 97  FIFNTMMRAYIQRNVPQ---QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
           F+ NT++RA+    +P    +A   + LML +    + +T+P L +A A    V  G   
Sbjct: 109 FLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV--GVQA 166

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGD--LSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           H   LK GF +D YV+NTLI+MY+  G   L  AR +FD       V+W++++ GYV + 
Sbjct: 167 HAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSG 226

Query: 212 NVEEAKFIYNKM------PE---------------------------------RNIIASN 232
              +A  ++ +M      P+                                 +++   N
Sbjct: 227 LSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCN 286

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           ++I    + G++  A  +F+ M ++ +VSW+++I         +EA+ +F  M    V  
Sbjct: 287 ALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRP 346

Query: 293 DEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           D+V  + VL+AC++  +V  G     ++ +  GI+  I     ++ M+   G +   E+ 
Sbjct: 347 DDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMV---ERA 403

Query: 352 FDAGHNLDL----ISWNSMISGYLKCGSVEKARALFDAMI------EKDVVSWSTMISGY 401
            +  H + +    I W ++++     G +E    +   ++      E + V  S +   Y
Sbjct: 404 MEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNV---Y 460

Query: 402 AQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQG--KWIHAYI 452
           A   ++ E   +  EM   GI+     +LV +       +A D+   +W   Y+
Sbjct: 461 ALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYM 514



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETL---SLFMEMQHHGIRPDEATLVSVISACT 437
           AL    +  D    +T+I  +A     S  L   S F  M      P++ T   ++ AC 
Sbjct: 98  ALLVPSVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACA 157

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC--VDNALEVFHGTEEKGVSSW 495
               +  G   HA   K G   +  +  TLI MY   G   + +A  VF    +    +W
Sbjct: 158 AFPGV--GVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTW 215

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           +A+I G+  +GL+  ++ +F EM+ SGV P+E+T +GV
Sbjct: 216 SAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGV 253


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/694 (36%), Positives = 376/694 (54%), Gaps = 78/694 (11%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +L + L+   S  Q  QI +Q ++ GL   T    +LI   +       + Y+  +    
Sbjct: 1   MLLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS-------IDYARFVLDQT 53

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
            SP  F +N+++RAY     PQ ++ LY  ML ++    N+T+P + +A +   SV EG+
Sbjct: 54  PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH HVL+ GF SD++V N+LI+MY  C  L +AR  +D+    D VSW           
Sbjct: 114 QIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSW----------- 162

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYE 270
                               NS+I  + + G V +A  LF+EMP ++++V W+A+I+ Y 
Sbjct: 163 --------------------NSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYG 202

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEV-----VVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +   + E L LF  M+   V  DEV      +V +LSAC+ L   + G  +        I
Sbjct: 203 KEGDFVEMLSLFRQML---VSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKI 259

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
                L  ALI MYS                               KCG VEKA  +FD 
Sbjct: 260 PLNTILVTALIDMYS-------------------------------KCGDVEKAWRIFDG 288

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           +  K++ SW+ +I+G  Q     E + L+  M+   ++P+E TLV+V+SAC  L AL+ G
Sbjct: 289 VSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG 348

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + +H Y+ +NGL +N IL T L+DMY K G +D+A  +F  T EK V+ WNA+I+G A +
Sbjct: 349 REVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYH 408

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G    SL +FS+M ++GV PN++TF+GVL AC H GLV+EG   F+SM  +H L P  +H
Sbjct: 409 GDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEH 468

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y CMVDLLGRAG LKEA EL+++M + PD   WGALL AC+ H + E+ +++   ++  Q
Sbjct: 469 YACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQ 528

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
             + GF +LLSNI+AS GRW DV  VR  +  + + K  GCS +E +G++H F+  D TH
Sbjct: 529 DPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTH 588

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
            +  EI    + +   LK EGY  +   +A +I+
Sbjct: 589 LKSGEIYGAYEILVNHLKAEGYVANFDFIANNIN 622


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/667 (34%), Positives = 361/667 (54%), Gaps = 63/667 (9%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TY  L Q  +   ++ EGK +H+H+  +GF                              
Sbjct: 87  TYCNLIQVCSQTRALEEGKKVHEHIRTSGF------------------------------ 116

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
            V  +V WN +L  Y    ++ +A+ ++++MP R++ + N M+  +   G + EA +LF 
Sbjct: 117 -VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFD 175

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVK 311
           EM +KD  SW+A+++ Y + +  EEALVL+  M         +  VS+  A A     ++
Sbjct: 176 EMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIR 235

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H   V+ G++                                D + W+S++  Y 
Sbjct: 236 RGKEIHGHIVRAGLDS-------------------------------DEVLWSSLMDMYG 264

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           KCG +++AR +FD ++EKDVVSW++MI  Y +  ++ E  SLF E+     RP+E T   
Sbjct: 265 KCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAG 324

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V++AC  L   + GK +H Y+ + G    S   ++L+DMY K G +++A  V  G  +  
Sbjct: 325 VLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPD 384

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + SW +LI G A NG  D++L+ F  + KSG  P+ +TFV VL AC H GLV++G   F 
Sbjct: 385 LVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFY 444

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           S+ ++HRL   S HY C+VDLL R+G  ++ + +I  MPM P    W ++LG C  +G+ 
Sbjct: 445 SITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNI 504

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
           ++ E   ++L +++P++   +V ++NI+A+ G+W++  ++R  M   GV K PG S  E 
Sbjct: 505 DLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEI 564

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731
               H F+A D +HP  N+I   L E+ KK+K EGY P T  V  D++ E+KE  L  HS
Sbjct: 565 KRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHS 624

Query: 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           EKLA+AF +++      I++ KNLR C DCH A KFIS    R+I VRD  RFH F++G 
Sbjct: 625 EKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQ 684

Query: 792 CSCMDFW 798
           CSC D+W
Sbjct: 685 CSCGDYW 691



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 174/387 (44%), Gaps = 49/387 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQASALR 144
           K+F  +   + + +  M+  Y++++ P++A+ LY LM    N   + +T  +   A+A  
Sbjct: 172 KLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAV 231

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             +  GK IH H+++AG DSD  + ++L++MY  CG +  AR +FD+    D+VSW S++
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMI 291

Query: 205 AGYVNADNVEEAKFIYNKM------PERNI------------------------------ 228
             Y  +    E   +++++      P                                  
Sbjct: 292 DRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFD 351

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               AS+S++ ++ + GN+  A  +    PK DLVSW++LI    QN   +EAL  F  +
Sbjct: 352 PYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLL 411

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGE 344
           +      D V  V+VLSAC +  +V+ G    +++  K  +    +    L+ + +  G 
Sbjct: 412 LKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGR 471

Query: 345 ITTAEKLF-DAGHNLDLISWNSMISGYLKCGSV----EKARALFDAMIEKDVVSWSTMIS 399
               + +  +         W S++ G    G++    E A+ LF    E + V++ TM +
Sbjct: 472 FEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPVTYVTMAN 530

Query: 400 GYAQHDQFSETLSLFMEMQHHGI--RP 424
            YA   ++ E   +   MQ  G+  RP
Sbjct: 531 IYAAAGKWEEEGKMRKRMQEIGVTKRP 557



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 8/208 (3%)

Query: 10  LSSTIKSSVNAKP-IFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRL 68
           L S ++   N++P IF  T+++++      KC   ++  +I   ++  GL +D    S L
Sbjct: 204 LYSLMQRVPNSRPNIF--TVSIAVAAAAAVKC--IRRGKEIHGHIVRAGLDSDEVLWSSL 259

Query: 69  IKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
           +          E      IF  +   +   + +M+  Y + +  ++   L+  ++ +   
Sbjct: 260 MDMYGKCGCIDEAR---NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCER 316

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            + YT+  +  A A   +   GK +H ++ + GFD   + +++L++MY  CG++ +A+ +
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEA 216
            D  P  DLVSW S++ G       +EA
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEA 404



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 56/96 (58%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           +P  +T  ++I  C+   AL++GK +H +IR +G     ++   L+ MY K G + +A +
Sbjct: 82  KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARK 141

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           VF     + + SWN ++ G+A  GL +++ ++F EM
Sbjct: 142 VFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM 177


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/760 (32%), Positives = 398/760 (52%), Gaps = 75/760 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  + +  A +  P+ F+ N M+R +    +P  A+  Y+ ML +    D +T+P++ +
Sbjct: 56  RMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVK 115

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A    + EG+  H  V+K G + DVY  N+L+  YA  G +  A ++FD  PV D+V+
Sbjct: 116 CCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVT 175

Query: 200 WNSILAGYVNA---------------------DNV-------------------EEAKFI 219
           WN+++ GYV+                      D+V                   E   ++
Sbjct: 176 WNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYV 235

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                E++I    S++ ++ + G VA A  +F  MP + +V+W+ +I  Y  NE  +EA 
Sbjct: 236 IRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAF 295

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             FM M    + V+ V  +++L+ACA       G SVH   V+     ++ L+ AL+ MY
Sbjct: 296 DCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMY 355

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
              G++ ++EK+F    N  L+SWN+MI+ Y+                            
Sbjct: 356 GKVGKVESSEKIFGKIANKTLVSWNNMIAAYM---------------------------- 387

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
                + ++E ++LF+E+ +  + PD  T+ +V+ A   L +L   + IH+YI   G   
Sbjct: 388 ---YKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAE 444

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N+++   ++ MY + G V  + E+F     K V SWN +I+G+A++G    +LEMF EMK
Sbjct: 445 NTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMK 504

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            +G+ PNE TFV VL AC   GLVDEG  HFN M+QE+ + P  +HYGCM DLLGR G L
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDL 564

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
           +E  + IESMP+ P    WG+LL A +   D ++ E    ++ +L+ D+ G +++LS+++
Sbjct: 565 REVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMY 624

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           A  GRW+DV  VR +M  +G+ +    S++E +     F  GD +H Q   I  + + ++
Sbjct: 625 ADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILS 684

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           +K++      DT   ++ +    + TT+  +HS +LA+ FGLI+    +PI + KN+RIC
Sbjct: 685 RKIE---ETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRIC 741

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           N CH A K ISR   R IVV D   +H F  GSC C D+W
Sbjct: 742 NHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 178/381 (46%), Gaps = 34/381 (8%)

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
           P+R   +S S++V    +G + EA      +   D    + +I  +    +   AL  + 
Sbjct: 39  PKRG--SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYR 96

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M++     D      V+  CA L  +  G + H + +K+G+E  +   N+L+  Y+  G
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +  AE++FD     D+++WN+M+ GY+  G    A A F  M                 
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEM----------------- 199

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           HD         +E+QH     D   +++ ++AC   V+  QGK IH Y+ ++GL+ +  +
Sbjct: 200 HDA--------LEVQH-----DSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKV 246

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT+L+DMY K G V  A  VF     + V +WN +I G+A+N   D++ + F +M+  G+
Sbjct: 247 GTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL 306

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
               +T + +L AC        G R  +  +   +  P+      ++++ G+ G ++ +E
Sbjct: 307 QVEVVTAINLLAACAQTESSLYG-RSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSE 365

Query: 584 ELIESMPMSPDVATWGALLGA 604
           ++   +  +  + +W  ++ A
Sbjct: 366 KIFGKIA-NKTLVSWNNMIAA 385



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 43/288 (14%)

Query: 69  IKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           IK  T LL       E++Y+  +FA +       +N M+  Y     P +A   +  M  
Sbjct: 244 IKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRA 303

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
             + V+  T   L  A A   S   G+ +H +V++  F   V +   L+ MY   G + +
Sbjct: 304 EGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVES 363

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE------------- 225
           + K+F +     LVSWN+++A Y+  +   EA  ++ ++      P+             
Sbjct: 364 SEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVL 423

Query: 226 --------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                N +  N+++ ++ R G+V  +  +F +M  KD++SW+ +
Sbjct: 424 LGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTM 483

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           I  Y  +   + AL +F  M  + +  +E   VSVL+AC+   +V  G
Sbjct: 484 IMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG 531


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/752 (33%), Positives = 379/752 (50%), Gaps = 81/752 (10%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           FL SP  N   +  MMRA+        A+ L++ ML   V  D  T       + L L  
Sbjct: 97  FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV-----TTVLNLPG 151

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
                +H   +K G D+ V+V NTL++ Y   G L+AAR++F E    D V++N+++ G 
Sbjct: 152 CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGC 211

Query: 208 VNADNVEEAKFIYNKMPER---------------------------------------NI 228
                  +A  ++  M                                          N+
Sbjct: 212 SKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNV 271

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             +NS++  + +   + +  RLF EMP++D VS++ +I+ Y  N+     L LF  M   
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM--Q 329

Query: 289 RVMVDEVVV--VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           ++  D  V+   ++LS   +L  V  G  +HA  V +G+     L NALI MYS      
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS------ 383

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG ++ A++ F    EK  +SW+ +I+GY Q+ Q
Sbjct: 384 -------------------------KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF +M+  G+RPD AT  S+I A + L  +  G+ +H+Y+ ++G K +   G+ 
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSV 478

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K GC+D AL  F    E+   SWNA+I  +A  G A  +++MF  M   G  P+
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TF+ VL AC H GL DE  ++F+ M  ++ + P  +HY C++D LGR G   + ++++
Sbjct: 539 SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 598

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP   D   W ++L +C+ HG+ E+      KL  ++P     +V+LSNI+A  G+W+
Sbjct: 599 VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 658

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   V+ +M  RGV K  G S +E    I+ F + D T P I+EI + LD + K++  +G
Sbjct: 659 DAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 718

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PD       +D E K  +L  HSE+LAIAF L+      PIRIMKNL  C DCH   K
Sbjct: 719 YKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIK 778

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+  +R+I+VRD  RFHHFK G CSC D+W
Sbjct: 779 MISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 219/495 (44%), Gaps = 71/495 (14%)

Query: 154 HDHVLKAGFDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           H H  +A FD     +++  N +++ Y+  GDL AA+ LF  SP  +  +W  ++  +  
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 117

Query: 210 ADNVEEAKFIYNKM------PER----------------------------NIIASNSMI 235
           A    +A  ++  M      P+R                            ++   N+++
Sbjct: 118 AGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLL 177

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
             + + G +A A R+F EM  KD V+++A++    +  ++ +AL LF  M    +     
Sbjct: 178 DAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHF 237

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
              S+L+  A +  +  G  VHAL ++      + + N+L+  YS C  +    +LFD  
Sbjct: 238 TFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD-- 295

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                                         M E+D VS++ +I+ YA +   +  L LF 
Sbjct: 296 -----------------------------EMPERDNVSYNVIIAAYAWNQCAATVLRLFR 326

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ  G         +++S    L  +  GK IHA +   GL    +LG  LIDMY K G
Sbjct: 327 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG 386

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +D A   F    EK   SW ALI G+  NG  +++L++FS+M+++G+ P+  TF  ++ 
Sbjct: 387 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 446

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A   + ++  G R  +S +     + +      +VD+  + G L EA    + MP    +
Sbjct: 447 ASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 505

Query: 596 ATWGALLGACKKHGD 610
            +W A++ A   +G+
Sbjct: 506 -SWNAVISAYAHYGE 519



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 184/431 (42%), Gaps = 71/431 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N MM    +  +  QA+ L+  M    +   ++T+  +   +A   
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMA 250

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G  +H  VL++    +V+VNN+L++ Y+ C  L   R+LFDE P  D VS+N I+A
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 206 GYVNADNVEEAKFIYNKM----------------------PERNI--------------- 228
            Y           ++ +M                      P+ +I               
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
             +  N++I ++ + G +  A   F    +K  +SW+ALI+ Y QN  +EEAL LF +M 
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D     S++ A ++L ++  G  +H+  ++ G +  +   + L+ MY+ CG + 
Sbjct: 431 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 490

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A + FD     + ISWN++IS Y   G  + A  +F+ M+                   
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML------------------- 531

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
                       H G  PD  T +SV++AC+H    D+  K+ H    +  +        
Sbjct: 532 ------------HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA 579

Query: 466 TLIDMYMKLGC 476
            +ID   ++GC
Sbjct: 580 CVIDTLGRVGC 590



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 189/430 (43%), Gaps = 40/430 (9%)

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           L   +++ ++  A+ ++++MP +NI + N ++  +   G++  A  LF   P ++  +W+
Sbjct: 50  LRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWT 109

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            ++  +       +AL LF  M+   V+ D V V +VL+     TV     S+H  A+K 
Sbjct: 110 IMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN-LPGCTV----PSLHPFAIKF 164

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G++ ++ + N L+  Y   G +  A ++F   H+ D +++N+M+ G  K G         
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG--------- 215

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                                   ++ L LF  M+  GI     T  S+++    +  L 
Sbjct: 216 ----------------------LHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLL 253

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  +HA + ++   +N  +  +L+D Y K  C+D+   +F    E+   S+N +I  +A
Sbjct: 254 LGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            N  A   L +F EM+K G     + +  +L     +  V  G +  ++ +    L    
Sbjct: 314 WNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIG-KQIHAQLVLLGLASED 372

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKL 621
                ++D+  + GML  A+    +      + +W AL+    ++G HE   ++    + 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAI-SWTALITGYVQNGQHEEALQLFSDMRR 431

Query: 622 VELQPDHDGF 631
             L+PD   F
Sbjct: 432 AGLRPDRATF 441



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           T + A  VK G +      N  +    S G +  A  +FD   + ++ S N ++S Y   
Sbjct: 28  TPLDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSS 87

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +  A+ LF +   ++  +W+ M+  +A   + S+ LSLF  M   G+ PD  T+ +V+
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL 147

Query: 434 S--ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           +   CT          +H +  K GL  +  +  TL+D Y K G +  A  VF    +K 
Sbjct: 148 NLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKD 200

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             ++NA+++G +  GL  ++L++F+ M+++G+     TF  +L     M  +  GH+  +
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ-VH 259

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           +++       N      ++D   +   L +   L + MP   +V+
Sbjct: 260 ALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 341/591 (57%), Gaps = 34/591 (5%)

Query: 213 VEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISC 268
           +EE + I++++      R  IA N ++ ++ + G + EA  +F  + ++ +VSWSA+I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 269 YEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC 327
           Y  +   +EAL+LF  M  D RV  + +    V +AC  +  ++ G  +HALA+      
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAM------ 114

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
                        + GE+ ++  + +          N++++ Y++CGS+E+AR +FD M 
Sbjct: 115 -------------ASGELKSSNAILE----------NALLNMYVRCGSLEEARKVFDTMD 151

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
             D  SW++MI+   ++ +  E L LF  M   GI P   TL SV++AC    AL  GK 
Sbjct: 152 HPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQ 211

Query: 448 IHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           IH+ +  +G   + +  T L+DMY K G ++ + +VF   E +   SW A+I   A +G 
Sbjct: 212 IHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQ 271

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
            D++LE+F EM   G+  +  TF+ VL AC H GL+ E    F+SM++++ + P   HY 
Sbjct: 272 GDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYC 331

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627
             +D +GRAG L++AEELI SMP  P+  TW  LL AC+ H   E   +V   L +L P+
Sbjct: 332 RALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPE 391

Query: 628 HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
               + LL N++A+ GR+ D + VR  M  RG+ K+PG S IE    +HEF+AGDR HP 
Sbjct: 392 DSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPS 451

Query: 688 INEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN 747
            +EI   L+++  +++  GY P+T +V   +++EEKE  +  HSEKLAIAFGLI   P  
Sbjct: 452 RDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGT 511

Query: 748 PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P+ I+KNLR+C+DCH A K I++   R IVVRD HRFHHF+ G CSC D+W
Sbjct: 512 PLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 174/431 (40%), Gaps = 77/431 (17%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           EG+ IH  +   GF       N L++MYA CG L  AR +F+      +VSW++++  Y 
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 209 NADNVEEAKFIYNKM------------------------------------------PER 226
                +EA  ++++M                                             
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N I  N+++ ++ R G++ EA ++F  M   D  SW+++I+   +N    EAL LF  M 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +    V + SVL+ACA    +K G  +H+     G    +  Q AL+ MY+ CG + 
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            + K+F A    + +SW +M                               I+  AQH Q
Sbjct: 243 CSSKVFTAMETRNSVSWTAM-------------------------------IAALAQHGQ 271

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
             E L LF EM   G+  D  T + V+ AC+H   + +  ++ H+ +    +        
Sbjct: 272 GDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYC 331

Query: 466 TLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
             +D   + G + +A E+ H         +W  L+    ++  A+++ ++   + K  + 
Sbjct: 332 RALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSK--LA 389

Query: 525 PNEITFVGVLG 535
           P +     +LG
Sbjct: 390 PEDSMAYTLLG 400



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 4/173 (2%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  ++ P+ F + +M+ A  +     +A+ L+  M    +   + T   +  A A   
Sbjct: 145 KVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSG 204

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  GK IH  +  +GF S V     L++MYA CG L  + K+F      + VSW +++A
Sbjct: 205 ALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIA 264

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR----KGNVAEACRLFKEM 254
                   +EA  ++ +M    ++A  +  +   R     G + E+   F  M
Sbjct: 265 ALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSM 317


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 332/566 (58%), Gaps = 32/566 (5%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L    G++  A RLF  +P  D   + +L+    +     + ++ +  M+       
Sbjct: 129 LISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQS 188

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
                SV+ ACA+L+ ++ G  +H+  +  G    + +Q ALI +Y+             
Sbjct: 189 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA------------- 235

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             K   ++ A+ +FDAM ++ +++W+++ISGY Q+    E++ L
Sbjct: 236 ------------------KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 277

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  M   G +PD AT+VS++S+C+ L ALD G W+H Y   NG  +N +LGT+LI+MY +
Sbjct: 278 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 337

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G V  A EVF   +E+ V +W A+I G+ M+G   +++E+F+EM+  G  PN ITFV V
Sbjct: 338 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 397

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES-MPMS 592
           L AC H GL+D+G R F+SM + + L P  +H  CMVD+ GRAG+L +A + I+  +P  
Sbjct: 398 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 457

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P  A W ++LGAC+ H + ++G +V   ++ ++P++ G +V+LSNI+A  GR D V  VR
Sbjct: 458 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 517

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            MM RR + K  G S IE N   + F  GD++HPQ N I   LDE+  +    GY P   
Sbjct: 518 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPE 577

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            +  D+++EE++  L  HSEKLA+AFGL+  +    IRI+KNLRIC DCH+A K IS   
Sbjct: 578 SLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIA 637

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           DREI+VRD+ RFHHFK GSCSC+D+W
Sbjct: 638 DREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 182/389 (46%), Gaps = 73/389 (18%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA-----GY 207
           +H H++ +G      +   LI++    G ++ AR+LF   P  D   ++S+L      G+
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169

Query: 208 VNADNVEEAKFIYNKMPERNIIASN----------------------------------S 233
                +   + +++  P+ N   ++                                  +
Sbjct: 170 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 229

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L+ +  ++  A ++F  MP++ +++W++LIS Y+QN + +E++ LF  M++     D
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPD 289

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              +VS+LS+C+ L  +  G  +H  A   G +  + L  +LI+MY+ CG ++ A ++FD
Sbjct: 290 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 349

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
           +    ++++W +MISGY                           + GY +     + + L
Sbjct: 350 SMKERNVVTWTAMISGY--------------------------GMHGYGR-----QAMEL 378

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYM 472
           F EM+ +G RP+  T V+V+SAC H   +D G+ + + +++  GL         ++DM+ 
Sbjct: 379 FTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 438

Query: 473 KLGCVDNALEVFHG--TEEKGVSSWNALI 499
           + G +++A +       +E G + W +++
Sbjct: 439 RAGLLNDAYQFIKKFIPKEPGPAVWTSML 467



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 174/374 (46%), Gaps = 75/374 (20%)

Query: 11  SSTIKSSVNAKPIFK-PTINLSILETH------------------------LQKCQSFKQ 45
           + T+K++ ++ P+ + PT+N   L+T                         L+     + 
Sbjct: 47  TGTVKTTTSSAPLDRNPTMNKIKLQTQQLAFQHPVTRNFDTQSHSPVHEALLRSGPRLRN 106

Query: 46  FTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRA 105
             Q+ + +I++GL       ++LI     +     ++Y+ ++F  + +P+ F+F+++++ 
Sbjct: 107 LQQVHAHIIVSGLHRSRSLLTKLISL---VCTAGSITYARRLFPTVPNPDSFLFDSLLKV 163

Query: 106 YIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA----SALRLSVFEGKLIHDHVLKAG 161
             +       +  Y+ ML +     NYT+  + +A    SALRL    GK IH HV+  G
Sbjct: 164 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL----GKEIHSHVMVCG 219

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           + SD+YV   LI +YA   D+  A+K+FD  P   +++WNS+++GY      +E+  +++
Sbjct: 220 YGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFH 279

Query: 222 KMPER---------------------------------------NIIASNSMIVLFGRKG 242
            M E                                        N++   S+I ++ R G
Sbjct: 280 LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 339

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
           NV++A  +F  M ++++V+W+A+IS Y  +    +A+ LF  M  +    + +  V+VLS
Sbjct: 340 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 303 ACANLTVVKAGTSV 316
           ACA+  ++  G  V
Sbjct: 400 ACAHSGLIDDGRRV 413



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 42/310 (13%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VHA  +  G+    +L   LI +  + G IT A +LF    N D   ++S++    K G 
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG- 168

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFS-ETLSLFMEMQHHGIRPDEATLVSVIS 434
                                          FS +T+  +  M   G      T  SVI 
Sbjct: 169 -------------------------------FSIDTVLFYRRMLFSGAPQSNYTFTSVIK 197

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L AL  GK IH+++   G   +  +   LI +Y K   +  A +VF    ++ + +
Sbjct: 198 ACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIA 257

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN+LI G+  NGL  +S+ +F  M +SG  P+  T V +L +C  +G +D G    +   
Sbjct: 258 WNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYA 316

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             +  + N      ++++  R G + +A E+ +SM    +V TW A++     HG     
Sbjct: 317 DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGMHG----- 370

Query: 615 ERVGRKLVEL 624
              GR+ +EL
Sbjct: 371 --YGRQAMEL 378



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I S +++ G  +D +  + LI          +M  + K+F  +       +N+++  Y 
Sbjct: 210 EIHSHVMVCGYGSDMYVQAALIALYAKA---SDMKVAKKVFDAMPQRTIIAWNSLISGYD 266

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYT-YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           Q  +PQ++I L+ LM+ +    D+ T   LL+  S L    F G  +HD+    GFD +V
Sbjct: 267 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDF-GCWLHDYADGNGFDLNV 325

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
            +  +LINMY  CG++S AR++FD     ++V+W ++++GY       +A  ++ +M   
Sbjct: 326 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 385

Query: 224 -PERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
            P  N I   +++      G + +  R+F  M
Sbjct: 386 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 417


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 318/519 (61%), Gaps = 33/519 (6%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F+ M++  V  D    VS+L ACA+    + G   H +AVK G   +  +   LI+MY+
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          +CG V  AR +FD M  + VVS++ MI+ 
Sbjct: 185 -------------------------------ECGDVRAARVMFDRMDGECVVSYNAMITA 213

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
             +     E L LF EMQ  G++P   TL+SV+SAC  L AL+ G+WIH YIRK  L   
Sbjct: 214 SVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL 273

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             + T LIDMY K G +++A+ VF   E +   +W+ +++ +A +G   +++ MF EMKK
Sbjct: 274 VKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKK 333

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G+ P+++TF+GVL AC H G+V EG ++F+SM +E+ +    KHYGC+ DLL R+G L+
Sbjct: 334 QGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLE 392

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
            A + I+ +P+ P    W  LL AC  HGD +MG+RV  +++EL   H G +V+ SN+ A
Sbjct: 393 RAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + GRW+++  VR +M  +GVVK+PGCS IE + ++HEF AGD +HP   E   M+DE+ +
Sbjct: 453 NTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIE 512

Query: 701 KLKLEGYAPDTLEV-AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
           +LKL GY P+T  V   ++ +EEK T+L  HSEKLAI+FGL+  +P   +RI+KNLR+C 
Sbjct: 513 QLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCP 572

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH+ AK +S  F+R I++RD +RFHHF+ G CSC D+W
Sbjct: 573 DCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 216/524 (41%), Gaps = 78/524 (14%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTG--LIADTFAASRLIKFSTDL---LPFIEMSYSFKI 87
           L  +L  C S +   Q+ +  +  G  L A     +RL+   T+     P   ++Y+ ++
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAP-AHLAYARQV 89

Query: 88  FAFLESPNGFI-FNTMMRAYIQRNVPQQAIC----LYKLMLNNNVGVDNYTYPLLAQASA 142
           F  +  P   I +NT++R Y +             ++  M+   V  D YT+  L +A A
Sbjct: 90  FDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACA 149

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +  EG+  H   +KAG     YV  TLINMYA CGD+ AAR +FD      +VS+N+
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASN------------------------------ 232
           ++   V +    EA  ++ +M  + +  ++                              
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 233 ---------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                    ++I ++ + G++ +A  +F++M  +D  +WS ++  Y  +    EA+ +F 
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFE 329

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  D+V  + VL AC++  +V  G        + GI   I     +  + +  G
Sbjct: 330 EMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSG 389

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWST 396
           ++  A K  D        I W +++S     G V+  + +F+ ++E       D V +S 
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           + +   + ++ +    L  E             V  +  C+   +++    +H +   +G
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKG-----------VVKVPGCS---SIEIDNMVHEFFAGDG 495

Query: 457 LKINSILGTTLIDMYMK----LGCVDNALEVFH---GTEEKGVS 493
              +S     ++D  ++    +G V N   VFH   G EEK  S
Sbjct: 496 SHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 379 ARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLS----LFMEMQHHGIRPDEATLVSVI 433
           AR +FD +    DV+ ++T++ GYA+             +F+ M   G+ PD  T VS++
Sbjct: 86  ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC    A ++G+  H    K G   +  +  TLI+MY + G V  A  +F   + + V 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           S+NA+I     + L  ++L +F EM+  G+ P  +T + VL AC  +G ++ G R  +  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDY 264

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           I++ RL+   K    ++D+  + G L++A  + + M  S D   W  ++ A   HG
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYANHG 319


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 318/519 (61%), Gaps = 33/519 (6%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F+ M++  V  D    VS+L ACA+    + G   H +AVK G   +  +   LI+MY+
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          +CG V  AR +FD M  + VVS++ MI+ 
Sbjct: 185 -------------------------------ECGDVRAARVMFDRMDGECVVSYNAMITA 213

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
             +     E L LF EMQ  G++P   TL+SV+SAC  L AL+ G+WIH YIRK  L   
Sbjct: 214 SVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL 273

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             + T LIDMY K G +++A+ VF   E +   +W+ +++ +A +G   +++ MF EMKK
Sbjct: 274 VKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKK 333

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G+ P+++TF+GVL AC H G+V EG ++F+SM +E+ +    KHYGC+ DLL R+G L+
Sbjct: 334 QGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLE 392

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
            A + I+ +P+ P    W  LL AC  HGD +MG+RV  +++EL   H G +V+ SN+ A
Sbjct: 393 RAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + GRW+++  VR +M  +GVVK+PGCS IE + ++HEF AGD +HP   E   M+DE+ +
Sbjct: 453 NTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIE 512

Query: 701 KLKLEGYAPDTLEV-AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
           +LKL GY P+T  V   ++ +EEK T+L  HSEKLAI+FGL+  +P   +RI+KNLR+C 
Sbjct: 513 QLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCP 572

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH+ AK +S  F+R I++RD +RFHHF+ G CSC D+W
Sbjct: 573 DCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 114/524 (21%), Positives = 216/524 (41%), Gaps = 78/524 (14%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTG--LIADTFAASRLIKFSTDL---LPFIEMSYSFKI 87
           L  +L  C S +   Q+ +  +  G  L A     +RL+   T+     P   ++Y+ ++
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAP-AHLAYARQV 89

Query: 88  FAFLESPNGFI-FNTMMRAYIQRNVPQQAIC----LYKLMLNNNVGVDNYTYPLLAQASA 142
           F  +  P   + +NT++R Y +             ++  M+   V  D YT+  L +A A
Sbjct: 90  FDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACA 149

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +  EG+  H   +KAG     YV  TLINMYA CGD+ AAR +FD      +VS+N+
Sbjct: 150 SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNA 209

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASN------------------------------ 232
           ++   V +    EA  ++ +M  + +  ++                              
Sbjct: 210 MITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR 269

Query: 233 ---------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
                    ++I ++ + G++ +A  +F++M  +D  +WS ++  Y  +    EA+ +F 
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFE 329

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  D+V  + VL AC++  +V  G        + GI   I     +  + +  G
Sbjct: 330 EMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSG 389

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWST 396
           ++  A K  D        I W +++S     G V+  + +F+ ++E       D V +S 
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           + +   + ++ +    L  E             V  +  C+   +++    +H +   +G
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKG-----------VVKVPGCS---SIEIDNMVHEFFAGDG 495

Query: 457 LKINSILGTTLIDMYMK----LGCVDNALEVFH---GTEEKGVS 493
              +S     ++D  ++    +G V N   VFH   G EEK  S
Sbjct: 496 SHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 379 ARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLS----LFMEMQHHGIRPDEATLVSVI 433
           AR +FD +    DVV ++T++ GYA+             +F+ M   G+ PD  T VS++
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC    A ++G+  H    K G   +  +  TLI+MY + G V  A  +F   + + V 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           S+NA+I     + L  ++L +F EM+  G+ P  +T + VL AC  +G ++ G R  +  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDY 264

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           I++ RL+   K    ++D+  + G L++A  + + M  S D   W  ++ A   HG
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYANHG 319


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 343/606 (56%), Gaps = 8/606 (1%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP----K 256
           +S+L  Y+      +A+ + + MP R ++  +++I      G+   A  L + M     +
Sbjct: 59  SSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVE 118

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
            ++++W+ L+S   ++    +A++  + M     + D   V   LSA  ++  V  G  +
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H   VK G      +  ALI MY  CG      ++FD   ++D+ S N++++G  +   V
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238

Query: 377 EKARALFDAM----IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            +A  LF       IE +VVSW+++++   Q+ +  E + LF EMQ  GI P+  T+  V
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCV 298

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + A  ++ AL  G+  H +  + G   +  +G+ L+DMY K G V +A  +F     + V
Sbjct: 299 LPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNV 358

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SWNA+I G+AM+G A+ ++ +F  M+ S   P+ +TF  VLGAC   G  +EG  +FN 
Sbjct: 359 VSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNE 418

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M  +H + P  +HY CMV LLGRAG L +A ++I  MP  PD   WG+LLG+C+ HG+  
Sbjct: 419 MQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVV 478

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           + E     L +L+P++ G +VLLSNI+ASK  WD V  +R MM   G+ K  GCS IE  
Sbjct: 479 LAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIK 538

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H  LAGD +HP +  I   L  +  +++  G+AP T  V  D++++EK+  L  HSE
Sbjct: 539 NKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSE 598

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLA+A GLI+ S   P++++KNLRIC DCH A KFIS    REI VRD +RFHHFK G C
Sbjct: 599 KLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKC 658

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 659 SCADYW 664



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 40/284 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H +V+KAG   D  V   LI+MY  CG      ++FDES  +D+ S N+++AG   
Sbjct: 175 GEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG--- 231

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSAL 265
                                         R   V+EA RLF+E   +    ++VSW+++
Sbjct: 232 ----------------------------LSRNAQVSEALRLFREFVGRGIELNVVSWTSI 263

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ++C  QN    EA+ LF  M    +  + V +  VL A AN+  +  G S H  +++ G 
Sbjct: 264 VACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGF 323

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              I + +AL+ MY+ CG +  A  +F+A    +++SWN+MI GY   G  E A  LF +
Sbjct: 324 HHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRS 383

Query: 386 MI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRP 424
           M     + D+V+++ ++   +Q     E  S F EMQH HGI P
Sbjct: 384 MQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISP 427



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 154/346 (44%), Gaps = 43/346 (12%)

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM---- 386
           + ++L+H Y   G    A  + D   +  ++ W+++I+ +   G  E A  L + M    
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDG 116

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
           +E +V++W+ ++SG  +  +  + +   + M   G  PD   +   +SA   +  +  G+
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGE 176

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +H Y+ K G ++++ + T LIDMY K G  D  + VF  +    V+S NAL+ G + N 
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L +F E    G+  N +++  ++  C   G   E    F  M Q   +EPNS   
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM-QSEGIEPNSVTI 295

Query: 567 GC-----------------------------------MVDLLGRAGMLKEAEELIESMPM 591
            C                                   +VD+  + G +++A  + E+MP 
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY 355

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDGFHVLL 635
             +V +W A++G    HG+ E   R+ R +   + +PD   F  +L
Sbjct: 356 R-NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVL 400



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 42/212 (19%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++   +Q     +A+ L++ M +  +  ++ T P +  A A   ++  G+  H   L
Sbjct: 260 WTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSL 319

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV---NADN--- 212
           + GF  D+YV + L++MYA CG +  AR +F+  P  ++VSWN+++ GY     A+N   
Sbjct: 320 RKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVR 379

Query: 213 -----------------------------VEEAKFIYNKMPERNIIASN-----SMIVLF 238
                                         EE +  +N+M  ++ I+        M+ L 
Sbjct: 380 LFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLL 439

Query: 239 GRKGNVAEACRLFKEMP-KKDLVSWSALI-SC 268
           GR G + +A  +  +MP + D   W +L+ SC
Sbjct: 440 GRAGKLDDAYDIINQMPFEPDGCIWGSLLGSC 471



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           S T S+   ++H    PD   L S + +C+ L        +HA     G+  ++ + ++L
Sbjct: 5   STTSSVLNFLRHVSFPPDPRLLPSALKSCSALRLARA---LHAAAAVAGVSRDAFVASSL 61

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +  Y++ G   +A  V  G   + V  W+ALI   A +G A+ +  +   M+  GV PN 
Sbjct: 62  LHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNV 121

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           IT+ G++      G   +       M  E  L P++    C +  +G  G +   E+L
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFL-PDATGVSCALSAVGDVGDVAVGEQL 178


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 332/566 (58%), Gaps = 32/566 (5%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L    G++  A RLF  +P  D   + +L+    +     + ++ +  M+       
Sbjct: 65  LISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQS 124

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
                SV+ ACA+L+ ++ G  +H+  +  G    + +Q ALI +Y+             
Sbjct: 125 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA------------- 171

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             K   ++ A+ +FDAM ++ +++W+++ISGY Q+    E++ L
Sbjct: 172 ------------------KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 213

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  M   G +PD AT+VS++S+C+ L ALD G W+H Y   NG  +N +LGT+LI+MY +
Sbjct: 214 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 273

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G V  A EVF   +E+ V +W A+I G+ M+G   +++E+F+EM+  G  PN ITFV V
Sbjct: 274 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 333

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES-MPMS 592
           L AC H GL+D+G R F+SM + + L P  +H  CMVD+ GRAG+L +A + I+  +P  
Sbjct: 334 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 393

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652
           P  A W ++LGAC+ H + ++G +V   ++ ++P++ G +V+LSNI+A  GR D V  VR
Sbjct: 394 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 453

Query: 653 GMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTL 712
            MM RR + K  G S IE N   + F  GD++HPQ N I   LDE+  +    GY P   
Sbjct: 454 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPE 513

Query: 713 EVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAF 772
            +  D+++EE++  L  HSEKLA+AFGL+  +    IRI+KNLRIC DCH+A K IS   
Sbjct: 514 SLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIA 573

Query: 773 DREIVVRDRHRFHHFKHGSCSCMDFW 798
           DREI+VRD+ RFHHFK GSCSC+D+W
Sbjct: 574 DREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 179/389 (46%), Gaps = 73/389 (18%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA-----GY 207
           +H H++ +G      +   LI++    G ++ AR+LF   P  D   ++S+L      G+
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105

Query: 208 VNADNVEEAKFIYNKMPERNIIASN----------------------------------S 233
                +   + +++  P+ N   ++                                  +
Sbjct: 106 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 165

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I L+ +  ++  A ++F  MP++ +++W++LIS Y+QN + +E++ LF  M++     D
Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPD 225

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
              +VS+LS+C+ L  +  G  +H  A   G +  + L  +LI+MY+ CG ++ A ++FD
Sbjct: 226 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 285

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
           +    ++++W +MISG                               Y  H    + + L
Sbjct: 286 SMKERNVVTWTAMISG-------------------------------YGMHGYGRQAMEL 314

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYM 472
           F EM+ +G RP+  T V+V+SAC H   +D G+ + + +++  GL         ++DM+ 
Sbjct: 315 FTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 374

Query: 473 KLGCVDNALEVFHG--TEEKGVSSWNALI 499
           + G +++A +       +E G + W +++
Sbjct: 375 RAGLLNDAYQFIKKFIPKEPGPAVWTSML 403



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 50/326 (15%)

Query: 34  ETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           E  L+     +   Q+ + +I++GL       ++LI     +     ++Y+ ++F  + +
Sbjct: 31  EALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISL---VCTAGSITYARRLFPTVPN 87

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA----SALRLSVFE 149
           P+ F+F+++++   +       +  Y+ ML +     NYT+  + +A    SALRL    
Sbjct: 88  PDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL---- 143

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK IH HV+  G+ SD+YV   LI +YA   D+  A+K+FD  P   +++WNS+++GY  
Sbjct: 144 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQ 203

Query: 210 ADNVEEAKFIYNKMPER---------------------------------------NIIA 230
               +E+  +++ M E                                        N++ 
Sbjct: 204 NGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVL 263

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
             S+I ++ R GNV++A  +F  M ++++V+W+A+IS Y  +    +A+ LF  M  +  
Sbjct: 264 GTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGP 323

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSV 316
             + +  V+VLSACA+  ++  G  V
Sbjct: 324 RPNNITFVAVLSACAHSGLIDDGRRV 349



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 42/310 (13%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VHA  +  G+    +L   LI +  + G IT A +LF    N D   ++S++    K G 
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG- 104

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFS-ETLSLFMEMQHHGIRPDEATLVSVIS 434
                                          FS +T+  +  M   G      T  SVI 
Sbjct: 105 -------------------------------FSIDTVLFYRRMLFSGAPQSNYTFTSVIK 133

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC  L AL  GK IH+++   G   +  +   LI +Y K   +  A +VF    ++ + +
Sbjct: 134 ACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIA 193

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WN+LI G+  NGL  +S+ +F  M +SG  P+  T V +L +C  +G +D G    +   
Sbjct: 194 WNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGC-WLHDYA 252

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             +  + N      ++++  R G + +A E+ +SM    +V TW A++     HG     
Sbjct: 253 DGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGMHG----- 306

Query: 615 ERVGRKLVEL 624
              GR+ +EL
Sbjct: 307 --YGRQAMEL 314



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I S +++ G  +D +  + LI          +M  + K+F  +       +N+++  Y 
Sbjct: 146 EIHSHVMVCGYGSDMYVQAALIALYAKA---SDMKVAKKVFDAMPQRTIIAWNSLISGYD 202

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYT-YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           Q  +PQ++I L+ LM+ +    D+ T   LL+  S L    F G  +HD+    GFD +V
Sbjct: 203 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDF-GCWLHDYADGNGFDLNV 261

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
            +  +LINMY  CG++S AR++FD     ++V+W ++++GY       +A  ++ +M   
Sbjct: 262 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 321

Query: 224 -PERNIIASNSMIVLFGRKGNVAEACRLFKEM 254
            P  N I   +++      G + +  R+F  M
Sbjct: 322 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 353



 Score = 40.0 bits (92), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 8/167 (4%)

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           + +HA+I  +GL  +  L T LI +    G +  A  +F          +++L+   +  
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSK 564
           G +  ++  +  M  SG   +  TF  V+ AC  +  +  G   H + M+  +     S 
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGY----GSD 159

Query: 565 HY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            Y    ++ L  +A  +K A+++ ++MP    +A W +L+    ++G
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIA-WNSLISGYDQNG 205


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/752 (33%), Positives = 379/752 (50%), Gaps = 81/752 (10%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           FL SP  N   +  MMRA+        A+ L++ ML   V  D  T       + L L  
Sbjct: 97  FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV-----TTVLNLPG 151

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
                +H   +K G D+ V+V NTL++ Y   G L+AAR++F E    D V++N+++ G 
Sbjct: 152 CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGC 211

Query: 208 VNADNVEEAKFIYNKMPER---------------------------------------NI 228
                  +A  ++  M                                          N+
Sbjct: 212 SKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNV 271

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             +NS++  + +   + +  RLF EMP++D VS++ +I+ Y  N+     L LF  M   
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM--Q 329

Query: 289 RVMVDEVVV--VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           ++  D  V+   ++LS   +L  V  G  +HA  V +G+     L NALI MYS      
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS------ 383

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG ++ A++ F    EK  +SW+ +I+GY Q+ Q
Sbjct: 384 -------------------------KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF +M+  G+RPD AT  S+I A + L  +  G+ +H+Y+ ++G K +   G+ 
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSV 478

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K GC+D AL  F    E+   SWNA+I  +A  G A  +++MF  M   G  P+
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TF+ VL AC H GL DE  ++F+ M  ++ + P  +HY C++D LGR G   + ++++
Sbjct: 539 SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 598

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MP   D   W ++L +C+ HG+ E+      KL  ++P     +V+LSNI+A  G+W+
Sbjct: 599 VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 658

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   V+ +M  RGV K  G S +E    I+ F + D T P I+EI + LD + K++  +G
Sbjct: 659 DAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 718

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PD       +D E K  +L  HSE+LAIAF L+      PIRIMKNL  C DCH   K
Sbjct: 719 YKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIK 778

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+  +R+I+VRD  RFHHFK G CSC D+W
Sbjct: 779 MISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 219/495 (44%), Gaps = 71/495 (14%)

Query: 154 HDHVLKAGFDS----DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           H H  +A FD     +++  N +++ Y+  GDL AA+ LF  SP  +  +W  ++  +  
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 117

Query: 210 ADNVEEAKFIYNKM------PER----------------------------NIIASNSMI 235
           A    +A  ++  M      P+R                            ++   N+++
Sbjct: 118 AGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLL 177

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
             + + G +A A R+F EM  KD V+++A++    +  ++ +AL LF  M    +     
Sbjct: 178 DAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHF 237

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
              S+L+  A +  +  G  VHAL ++      + + N+L+  YS C  +    +LFD  
Sbjct: 238 TFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD-- 295

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                                         M E+D VS++ +I+ YA +   +  L LF 
Sbjct: 296 -----------------------------EMPERDNVSYNVIIAAYAWNQCAATVLRLFR 326

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EMQ  G         +++S    L  +  GK IHA +   GL    +LG  LIDMY K G
Sbjct: 327 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG 386

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +D A   F    EK   SW ALI G+  NG  +++L++FS+M+++G+ P+  TF  ++ 
Sbjct: 387 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 446

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           A   + ++  G R  +S +     + +      +VD+  + G L EA    + MP    +
Sbjct: 447 ASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 505

Query: 596 ATWGALLGACKKHGD 610
            +W A++ A   +G+
Sbjct: 506 -SWNAVISAYAHYGE 519



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 184/431 (42%), Gaps = 71/431 (16%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   +   +N MM    +  +  QA+ L+  M    +   ++T+  +   +A   
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMA 250

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  G  +H  VL++    +V+VNN+L++ Y+ C  L   R+LFDE P  D VS+N I+A
Sbjct: 251 HLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 310

Query: 206 GYVNADNVEEAKFIYNKM----------------------PERNI--------------- 228
            Y           ++ +M                      P+ +I               
Sbjct: 311 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 370

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
             +  N++I ++ + G +  A   F    +K  +SW+ALI+ Y QN  +EEAL LF +M 
Sbjct: 371 EDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMR 430

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D     S++ A ++L ++  G  +H+  ++ G +  +   + L+ MY+ CG + 
Sbjct: 431 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 490

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A + FD     + ISWN++IS Y   G  + A  +F+ M+                   
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML------------------- 531

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
                       H G  PD  T +SV++AC+H    D+  K+ H    +  +        
Sbjct: 532 ------------HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA 579

Query: 466 TLIDMYMKLGC 476
            +ID   ++GC
Sbjct: 580 CVIDTLGRVGC 590



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 191/434 (44%), Gaps = 40/434 (9%)

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           L   +++ ++  A+ ++++MP +NI + N ++  +   G++  A  LF   P ++  +W+
Sbjct: 50  LRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWT 109

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            ++  +       +AL LF  M+   V+ D V V +VL+     TV     S+H  A+K 
Sbjct: 110 IMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN-LPGCTV----PSLHPFAIKF 164

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
           G++ ++ + N L+  Y   G +  A ++F   H+ D +++N+M+ G  K G         
Sbjct: 165 GLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG--------- 215

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                                   ++ L LF  M+  GI     T  S+++    +  L 
Sbjct: 216 ----------------------LHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLL 253

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  +HA + ++   +N  +  +L+D Y K  C+D+   +F    E+   S+N +I  +A
Sbjct: 254 LGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            N  A   L +F EM+K G     + +  +L     +  V  G +  ++ +    L    
Sbjct: 314 WNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIG-KQIHAQLVLLGLASED 372

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKL 621
                ++D+  + GML  A+    +      + +W AL+    ++G HE   ++    + 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAI-SWTALITGYVQNGQHEEALQLFSDMRR 431

Query: 622 VELQPDHDGFHVLL 635
             L+PD   F  ++
Sbjct: 432 AGLRPDRATFSSII 445



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
           T + A  VK G +      N  +    S G +  A  +FD   + ++ S N ++S Y   
Sbjct: 28  TPLDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSS 87

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G +  A+ LF +   ++  +W+ M+  +A   + S+ LSLF  M   G+ PD  T+ +V+
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL 147

Query: 434 S--ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           +   CT          +H +  K GL  +  +  TL+D Y K G +  A  VF    +K 
Sbjct: 148 NLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKD 200

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             ++NA+++G +  GL  ++L++F+ M+++G+     TF  +L     M  +  GH+  +
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ-VH 259

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           +++       N      ++D   +   L +   L + MP   +V+
Sbjct: 260 ALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/760 (32%), Positives = 394/760 (51%), Gaps = 75/760 (9%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  + +  A +  P+ F+ N M+R +    +P  A+  Y+ ML +    D +T+P++ +
Sbjct: 56  RMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVK 115

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A    + EG+  H  V+K G + DVY  N+L+  YA  G +  A ++FD  PV D+V+
Sbjct: 116 CCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVT 175

Query: 200 WNSILAGYVNA---------------------DNV-------------------EEAKFI 219
           WN ++ GYV+                      D+V                   E   ++
Sbjct: 176 WNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYV 235

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                E++I    S++ ++ + G VA A  +F  MP + +V+W+ +I  Y  NE  +EA 
Sbjct: 236 IRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAF 295

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             FM M    + V+ V  +++L+ACA       G SVH   V+     ++ L+ AL+ MY
Sbjct: 296 DCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMY 355

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                                           K G VE +  +F  +  K +VSW+ MI+
Sbjct: 356 G-------------------------------KVGKVESSEKIFGKIANKTLVSWNNMIA 384

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y   + ++E ++LF+E+ +  + PD  T+ +V+ A   L +L   + IH+YI   G   
Sbjct: 385 AYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAE 444

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N+++   ++ MY + G V  + E+F     K V SWN +I+G+A++G    +LEMF EMK
Sbjct: 445 NTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMK 504

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            +G+ PNE TFV VL AC   GLVDEG  HFN M+QE+ + P  +HYGCM DLLGR G L
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDL 564

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
           +E  + IESMP+ P    WG+LL A +   D ++ E    ++ +L+ D+ G +++LS+++
Sbjct: 565 REVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMY 624

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           A  GRW+DV  VR +M  +G+ +    S++E +     F  GD +H Q   I  + D ++
Sbjct: 625 ADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILS 684

Query: 700 KKLKLEGYAPDTLEVAFDIDQEEKETTLF-RHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           +K+K      DT   ++ +    + TT+  +HS +LA+ FGLI+    +PI + KN+RIC
Sbjct: 685 RKIK---ETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRIC 741

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           N CH A K ISR   R IVV D   +H F  GSC C D+W
Sbjct: 742 NHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 176/381 (46%), Gaps = 34/381 (8%)

Query: 224 PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
           P+R   +S S++V    +G + EA      +   D    + +I  +    +   AL  + 
Sbjct: 39  PKRG--SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYR 96

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M++     D      V+  CA L  +  G + H + +K+G+E  +   N+L+  Y+  G
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +  AE++FD     D+++WN M+ GY+  G    A A F  M                 
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEM----------------- 199

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
           HD         +E+QH     D   +++ ++AC    +  QGK IH Y+ ++GL+ +  +
Sbjct: 200 HDA--------LEVQH-----DSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKV 246

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT+L+DMY K G V  A  VF     + V +WN +I G+A+N   D++ + F +M+  G+
Sbjct: 247 GTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL 306

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
               +T + +L AC        G R  +  +   +  P+      ++++ G+ G ++ +E
Sbjct: 307 QVEVVTAINLLAACAQTESSLYG-RSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSE 365

Query: 584 ELIESMPMSPDVATWGALLGA 604
           ++   +  +  + +W  ++ A
Sbjct: 366 KIFGKIA-NKTLVSWNNMIAA 385



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 43/288 (14%)

Query: 69  IKFSTDLLPFI----EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           IK  T LL       E++Y+  +FA +       +N M+  Y     P +A   +  M  
Sbjct: 244 IKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRA 303

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
             + V+  T   L  A A   S   G+ +H +V++  F   V +   L+ MY   G + +
Sbjct: 304 EGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVES 363

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PE------------- 225
           + K+F +     LVSWN+++A Y+  +   EA  ++ ++      P+             
Sbjct: 364 SEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVL 423

Query: 226 --------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
                                N +  N+++ ++ R G+V  +  +F +M  KD++SW+ +
Sbjct: 424 LGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTM 483

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           I  Y  +   + AL +F  M  + +  +E   VSVL+AC+   +V  G
Sbjct: 484 IMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG 531


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/786 (31%), Positives = 413/786 (52%), Gaps = 87/786 (11%)

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
           LI   +     I+   +F         +   +N M+ A+++    ++A+ L++ M ++  
Sbjct: 48  LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGA 107

Query: 128 GVDN---YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
              N   +   L +   A  LS+ + + IH  ++ AG + + +V   L++ Y   G L  
Sbjct: 108 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDD 167

Query: 185 ARKLF----DESPVLDLVSWNSILA-----GYVN-------ADNVEEAK----------- 217
           A ++F    DE P   LV+ +++++     G+         A N+E  K           
Sbjct: 168 AWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLN 227

Query: 218 ------------FIYNKMPE-----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                       F+  +  E     R+ +   +++  + R  +++ A   F  +   D+V
Sbjct: 228 ACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVV 287

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL---TVVKAGTSVH 317
           SW+A+ + Y Q+    EALVLF  M+   V       ++ L+ACA     T    G  + 
Sbjct: 288 SWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQ 347

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +L  + G+E    + NA ++MY+                               KCGS+ 
Sbjct: 348 SLLEEAGLEGDTAVANATLNMYA-------------------------------KCGSLA 376

Query: 378 KARALFDAM--IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVIS 434
            ARA+F+ +    +D ++W++M++ Y  H    E   LF  M+    ++P++ T V+V+ 
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 436

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF--HGTEEKGV 492
           A T   ++ QG+ IHA +  NG + ++++   L++MY K G +D+A  +F    + ++ V
Sbjct: 437 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 496

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +W +L+ G+A  G A+++L++F  M++ GV PN ITF+  L AC H G +++G    + 
Sbjct: 497 IAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSG 556

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M  +H + P SKH+ C+VDLLGR G L EAE+L+E    + DV TW ALL ACK   + E
Sbjct: 557 MTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQA-DVITWMALLDACKNSKELE 615

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            GER   ++++L P+    +++L++++A+ GRW++   +R  M+ +G+   PGCS +E N
Sbjct: 616 RGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 675

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H F AGD++HP+  EI   L+ +   +K  GY  DT  V  D+ QE KE  L RHSE
Sbjct: 676 QELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSE 735

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAFGL++    +P+R++KNLR+C+DCHTA K IS+   R+I++RD  R+HHF  G+C
Sbjct: 736 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 795

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 796 SCGDYW 801



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/541 (24%), Positives = 237/541 (43%), Gaps = 91/541 (16%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL---DLVSWNSILAG 206
           G+ IH  +    F+ +  + N LI+MY+ CG L  A++ FD  P     D+V+WN++++ 
Sbjct: 26  GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 85

Query: 207 YVNADNVEEAKFIYNKMP------------------------------------------ 224
           ++   +  EA  ++  M                                           
Sbjct: 86  FLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 145

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLF----KEMPKKDLVSWSALISCYEQNEMYEEALV 280
           ER      +++  +G+ G++ +A  +F     E P   LV+ SA+IS   QN   +E+L 
Sbjct: 146 EREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLR 205

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIHMY 339
           LF  M         V +VSVL+AC+ L V  A   V   A+++      N L   L+  Y
Sbjct: 206 LFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTY 265

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           +   +++ A   FDA  + D++SWN+M + YL                            
Sbjct: 266 ARSNDLSRARATFDAIQSPDVVSWNAMAAAYL---------------------------- 297

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL---VALDQGKWIHAYIRKNG 456
              QH +  E L LF  M   G+RP  AT ++ ++AC       A   GK I + + + G
Sbjct: 298 ---QHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 354

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           L+ ++ +    ++MY K G + +A  VF       +   +WN+++  +  +GL  ++ E+
Sbjct: 355 LEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFEL 414

Query: 515 FSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           F  M+    V PN++TFV VL A      + +G R  ++ +  +  E ++     ++++ 
Sbjct: 415 FQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG-REIHARVVSNGFESDTVIQNALLNMY 473

Query: 574 GRAGMLKEAEELIE-SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
            + G L +A+ + + S     DV  W +L+    ++G  E   ++   + +  ++P+H  
Sbjct: 474 AKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHIT 533

Query: 631 F 631
           F
Sbjct: 534 F 534



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 148/328 (45%), Gaps = 52/328 (15%)

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD-- 353
            ++++++AC+ L  + AG  +H+       E    L NALI MYS CG +  A++ FD  
Sbjct: 9   ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRL 68

Query: 354 -AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
                 D+++WN+MIS +L+ GS                                 E L 
Sbjct: 69  PRASKRDVVTWNAMISAFLRNGSAR-------------------------------EALQ 97

Query: 413 LFMEMQHHGI-RPDEATLVSVISACTH--LVALDQGKWIHAYIRKNGLKINSILGTTLID 469
           LF +M H G   P+  T VSV+ +C    L++L+  + IH  I   G++  + + T L+D
Sbjct: 98  LFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVD 157

Query: 470 MYMKLGCVDNALEVF--HGTEEKGVS--SWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            Y KLG +D+A EVF     EE   S  + +A+I     NG   +SL +F  M   G  P
Sbjct: 158 SYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKP 217

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-----CMVDLLGRAGMLK 580
           + +T V VL AC  + +         + + E  +E  S          ++    R+  L 
Sbjct: 218 SGVTLVSVLNACSMLPVGSA-----TAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLS 272

Query: 581 EAEELIESMPMSPDVATWGALLGACKKH 608
            A    +++  SPDV +W A+  A  +H
Sbjct: 273 RARATFDAI-QSPDVVSWNAMAAAYLQH 299



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 10/197 (5%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           +RP+   L+++++AC+ L  L  G+ IH+ I     + NS+LG  LI MY K G + +A 
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 482 EVFH---GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPNEITFVGVLGAC 537
           + F       ++ V +WNA+I  F  NG A ++L++F +M   G   PN +TFV VL +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 538 RHMGLVD-EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI----ESMPMS 592
              GL+  E  R  +  I    +E  +     +VD  G+ G L +A E+     +  P S
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP-S 181

Query: 593 PDVATWGALLGACKKHG 609
             + T  A++ AC ++G
Sbjct: 182 TSLVTCSAMISACWQNG 198


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/573 (39%), Positives = 341/573 (59%), Gaps = 16/573 (2%)

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVV 296
           +   G +  A  L +  P    V +++ I  +    ++  AL L   M+  H ++     
Sbjct: 72  YAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHT 131

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
           + + L AC  L V   G ++H  AVK+ +     +  AL+ MY+  G+   A  LFD G 
Sbjct: 132 LSASLPACGGLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFD-GM 187

Query: 357 NLD--LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
             D  ++S  +M++ Y K G ++ AR+LFD +  KD++ W+ M+ GY QH + SE L LF
Sbjct: 188 QPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLF 247

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG---LKINSILGTTLIDMY 471
             M   G+ PDE ++V  +SA   L   + G+W+H+++  +    +++N+ +GT LIDMY
Sbjct: 248 RRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMY 307

Query: 472 MKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
            K G +++A+ VF   G  ++ + +WNA++ G+AM+G + ++L  F +++  G+ P +IT
Sbjct: 308 YKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDIT 367

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           F+GVL AC H GLVDEG   F SM +E+ +EP  +HYGCMVDLLGRAG ++EA EL++SM
Sbjct: 368 FIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSM 427

Query: 590 PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
             + PD   W +LL AC+ H + E+G+R+   LV     + G +VLLSN++A+ G W +V
Sbjct: 428 TRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREV 487

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR MM   G+ K PGCS +E    + EF+AGDR+HP+  EI   L+E+    +  G+ 
Sbjct: 488 GRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHV 547

Query: 709 PDT---LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           P T   L    D D   KE  L  HSEKLA+AFGLI+  P   I+I+KNLR C DCH   
Sbjct: 548 PRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVL 607

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S    R+IV RDR+RFHHF  GSC+C D+W
Sbjct: 608 KLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 91/497 (18%), Positives = 183/497 (36%), Gaps = 100/497 (20%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L  C S ++ +++ +  +  G+  D     RL +          +  +  +      P  
Sbjct: 37  LAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYA---ASGRLDLAVALLRRTPDPTA 93

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE------G 150
             + + + A+  R +   A+ L   ML         ++ LL  A  L  S+        G
Sbjct: 94  VFYTSAIHAHSSRGLHHAALALLSEML--------LSHGLLPTAHTLSASLPACGGLAVG 145

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMY--------------------------------AV 178
           + +H + +K     + YV   L+ MY                                A 
Sbjct: 146 RALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAK 205

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA---------------------- 216
            G L  AR LFD  P  DL+ WN+++ GY       EA                      
Sbjct: 206 MGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLA 265

Query: 217 -----------------KFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                             F+ N    R   N     ++I ++ + G++ +A  +F ++  
Sbjct: 266 LSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGA 325

Query: 257 --KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
             +D+V+W+A+++ Y  +    EAL  F  +    +   ++  + VL+AC++  +V  G 
Sbjct: 326 GDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR 385

Query: 315 SV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--DLISWNSMISGYL 371
            +  ++A + GIE  +     ++ +    G +  A +L  +      D + W S+++   
Sbjct: 386 ELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACR 445

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHHGIRPDEA- 427
              ++E  + + D ++   + +  T +   + YA    + E   +   M+  GI+ +   
Sbjct: 446 LHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGC 505

Query: 428 TLVSVISACTHLVALDQ 444
           + V V       VA D+
Sbjct: 506 SAVEVGRRVVEFVAGDR 522


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 312/505 (61%), Gaps = 40/505 (7%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L AC  L  ++ G S+HA A K G+   + ++N+L+H Y +                  
Sbjct: 126 LLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGA------------------ 167

Query: 360 LISWNSMISGYLKCGSVEKARALFD--AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                        CG  E A  +FD   ++E+++VSW+++++G+A + + +E L++F E 
Sbjct: 168 -------------CGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRET 214

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
               + PD  T+VSV++AC  + AL  G+ +H +  K GL  NS +G  LID+Y K G V
Sbjct: 215 LEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGV 274

Query: 478 DNALEVFHGTEEKGVS----SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           ++A +VF   EE GV+    SW +LI+G A NG    +LE+F  M++  + P +IT VGV
Sbjct: 275 EDAWKVF---EEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGV 331

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLVD+G R+FN M  ++ + P  +H GCMVDLLGRAG ++EA   I +MP+ P
Sbjct: 332 LYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEP 391

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           +   W  LLGAC  H   E+GE    +LVEL P H G +VLLSN++A+ GRW D   +R 
Sbjct: 392 NAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRK 451

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M   GV K PG S++E    ++EF+ GDR+HP+ ++I   L E+A++L+ +GY P T  
Sbjct: 452 TMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSN 511

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  DI++EEKET L  HSE+LAIAF L+   P +PIRI+KNLR+C DCH   K IS+ +D
Sbjct: 512 VLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYD 571

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI+VRDR RFHHFK G CSC D+W
Sbjct: 572 REIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 172/389 (44%), Gaps = 51/389 (13%)

Query: 83  YSFKIFA-FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
           Y+  + +  L  P+ F  NT++R       P+ A+ L++  L      D +TYP L QA 
Sbjct: 74  YAVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPP---DTHTYPPLLQAC 130

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD--LVS 199
              L++ EG+ +H    K G  + V+V N+L++ Y  CG   +A ++FDE PVL+  LVS
Sbjct: 131 TRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVS 190

Query: 200 WNSILAGYVNADNVEEAKFIYNK------MPERNIIAS---------------------- 231
           WNS++ G+       E   I+ +      MP+   I S                      
Sbjct: 191 WNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFAS 250

Query: 232 -----------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEAL 279
                      N++I L+ + G V +A ++F+EM   + +VSW++LI     N   ++AL
Sbjct: 251 KVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDAL 310

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHM 338
            LF  M   R++  ++ +V VL AC++  +V  G    + +  K GI   I     ++ +
Sbjct: 311 ELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDL 370

Query: 339 YSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV---VSW 394
               G +  A           + + W +++        +E   A +  ++E D      +
Sbjct: 371 LGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDY 430

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIR 423
             + + YA   ++++   L   M  HG+R
Sbjct: 431 VLLSNLYAAVGRWADAHVLRKTMATHGVR 459



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  T   ++ ACT L+AL +G+ +HA   KNGL     +  +L+  Y   G  ++A  V
Sbjct: 118 PDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRV 177

Query: 484 FHGTE--EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           F      E+ + SWN+++ GFA NG  ++ L +F E  ++ + P+  T V VL AC  +G
Sbjct: 178 FDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIG 237

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            +  G R  +    +  L  NS     ++DL  + G +++A ++ E M ++  V +W +L
Sbjct: 238 ALTLG-RRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSL 296

Query: 602 L 602
           +
Sbjct: 297 I 297


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/587 (39%), Positives = 359/587 (61%), Gaps = 20/587 (3%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMN 284
           N    N+++ L+G     + A +LF E+P+  KD V ++ALI    ++    E+L LF+ 
Sbjct: 56  NHFLRNALLHLYGSCSLPSHARKLFDEIPQSHKDSVDYTALI----RHCPPFESLKLFIQ 111

Query: 285 MIDHRVMVDEVVVVSVLSACANLTV--VKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           M    + +D VV+V  L+ACA L     K G+ +H   VK G   +  + NAL+++Y   
Sbjct: 112 MRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKF 171

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G +  A K+F+      ++SW+  + G +K  SVE  R LFD M E++ V+W+ MI GY 
Sbjct: 172 GLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYV 231

Query: 403 QHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKIN 460
            +    E   L  EM    G R    TL SV+SAC+    +  G+W+H Y +++ GL   
Sbjct: 232 GNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFG 291

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
            ++GT+L+DMY K G ++ AL VF    ++ V +WNA++ G AM+G+   +++MF  M +
Sbjct: 292 VMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE 351

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
             V P+ +TF+ +L AC H GLV++G  +F+ +   +R++P  +HY CMV LLGRAG L+
Sbjct: 352 E-VKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLE 410

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           EAE ++++M + P+    G+L+G+C  HG  ++GE++ R L+E+ P +  +H++LSN++A
Sbjct: 411 EAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYA 470

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
             G+ +    +R ++ +RG+ K+PG S I  +G +H+F+AGD++H + +EI   LDEM  
Sbjct: 471 LSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMIC 530

Query: 701 KLKLEGYAPDT-LEVAFDIDQ--------EEKETTLFRHSEKLAIAFGLITISPPNPIRI 751
           +L+  GY P+T  +V F            EE E  LF HSEKLA+ FGL++    +P+ I
Sbjct: 531 RLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHI 590

Query: 752 MKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            KNLRIC DCH+A K  S+ + REIVVRDR+RFH FKHGSCSC D+W
Sbjct: 591 FKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 121/552 (21%), Positives = 227/552 (41%), Gaps = 131/552 (23%)

Query: 67  RLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN 126
           R    +T L P  ++  +  +   + SPN F+ N ++  Y   ++P  A  L+  +  ++
Sbjct: 28  RQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDEIPQSH 87

Query: 127 VGVDNYTY------PLLAQASALRLSVFE-------------------------GKLIHD 155
               +YT       P  +    +++  F+                         G  +H 
Sbjct: 88  KDSVDYTALIRHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHV 147

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            V+K GF     V N L+N+Y   G +  ARK+F+   V  +VSW+  L G V  ++VE 
Sbjct: 148 GVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVES 207

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
            + ++++MPERN +A   MIV +   G   EA  L KEM          +  C       
Sbjct: 208 GRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEM----------VFGC------- 250

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNA 334
                           +  V + SVLSAC+    V  G  VH  AVK +G++  + +  +
Sbjct: 251 -------------GFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTS 297

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           L+ MY+ CG I  A  +F +    ++++WN+M+ G    G  + A  +F +M+E+     
Sbjct: 298 LVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE----- 352

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
                                      ++PD  T ++++SAC+H   +++G W + +  +
Sbjct: 353 ---------------------------VKPDGVTFMALLSACSHSGLVEKG-WDYFHDLE 384

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
              +I                      E+ H           A ++G    G A +  E 
Sbjct: 385 PVYRIKP--------------------EIEH----------YACMVGLL--GRAGRLEEA 412

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL 573
              +K   + PNE+    ++G+C   G +  G +    +++   ++P N++++  + ++ 
Sbjct: 413 EIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLE---MDPLNTEYHIVLSNMY 469

Query: 574 GRAGMLKEAEEL 585
             +G +++A  L
Sbjct: 470 ALSGKVEKANSL 481


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 380/738 (51%), Gaps = 72/738 (9%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            +NTM+ A   R    + +  +  ML   +  +  ++  +  A +   ++  G+ IH  +L
Sbjct: 405  WNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLIL 464

Query: 159  KAGFDS-DVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGYVNADNVEE 215
                D  +  V   L++MY  CG +S A  +F E P+    LV+WN +L  Y   D  +E
Sbjct: 465  TRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKE 524

Query: 216  AKFIYNKMPE-----------------------------------RNIIASNSMIVLFGR 240
            A     +M +                                   R+     ++I + GR
Sbjct: 525  AFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGR 584

Query: 241  KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
               + +A  +F EM   D+VSW+A++S   +N  ++E   LF  M    V+ D+  + + 
Sbjct: 585  CRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATT 644

Query: 301  LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
            L  C   T +  G  +HA   +IG+E  I ++NAL++MYS+                   
Sbjct: 645  LDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSN------------------- 685

Query: 361  ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        CG   +A + F+ M  +D+VSW+ M + YAQ     E + LF +MQ  
Sbjct: 686  ------------CGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLE 733

Query: 421  GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            G++PD+ T  + ++       +  GK  HA   ++GL  +  + T L+ +Y K G +D A
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEA 793

Query: 481  LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            + +F G  +  V   NA+I   A +G ++++++MF +M++ GV P+  T V ++ AC H 
Sbjct: 794  MSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHA 853

Query: 541  GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            G+V+EG   F +M +   + P  +HY C VDLLGRAG L+ AE++I  MP   +   W +
Sbjct: 854  GMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTS 913

Query: 601  LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
            LLG CK  GD E+GER  ++++EL P +   HV+LSNI+ + G+W D    R  M+   V
Sbjct: 914  LLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENV 973

Query: 661  VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
               PG S  E    +HEF+AGDR+HP+ +EI  +LD++   ++  GY  D      D++ 
Sbjct: 974  KNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEADK---GLDVED 1030

Query: 721  EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
            E KE  L  HSE++AIAFGLI   P   ++I+KNLR+C DCHTA K+IS    REI+VRD
Sbjct: 1031 ELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRD 1090

Query: 781  RHRFHHFKHGSCSCMDFW 798
              RFHHF +G+CSC D W
Sbjct: 1091 SLRFHHFSNGTCSCKDCW 1108



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 167/696 (23%), Positives = 296/696 (42%), Gaps = 117/696 (16%)

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           ++R    + +C     +  +   D   Y  L Q+      + +GK  H+ +  AG +  +
Sbjct: 1   MKRGSIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHL 60

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
           ++ N LINMY  CG L  A  +F +    ++VSW ++++          A  ++  M   
Sbjct: 61  FLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLE 120

Query: 224 ----PE--------------------RNI-----------------IASNSMIVLFGRKG 242
               P                     R+I                 +  N+MI ++ + G
Sbjct: 121 SSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCG 180

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQ-NEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           ++ +A  +F  +P+KD+VSW+A+   Y Q    Y +AL +F  M+   +  + +  ++ L
Sbjct: 181 SLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---GHNL 358
            AC +L   + GT +H+L  +  +       NALI+MY  CG+   A  +F A      L
Sbjct: 241 GACTSL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQEL 297

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           DL+SWN+MIS      SVE  R                            + +++F  ++
Sbjct: 298 DLVSWNAMIS-----ASVEAGR--------------------------HGDAMAIFRRLR 326

Query: 419 HHGIRPDEATLVSVISA-CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
             G+RP+  TL+++++A     V     +  H  I ++G   + ++G  +I MY K G  
Sbjct: 327 LEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFF 386

Query: 478 DNALEVFHGTEEK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
             A  VF     K  V SWN ++          K +  F  M  +G+ PN+++F+ +L A
Sbjct: 387 SAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNA 446

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SPDV 595
           C +   +D G +  + ++   R    S     +V + G+ G + EAE + + MP+ S  +
Sbjct: 447 CSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSL 506

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQ----PDHDGFHVLLSNIHASKGRWDDVLEV 651
            TW  +LGA  ++   +  E  G  +  LQ    PD   F  +LS+ + S+     VL +
Sbjct: 507 VTWNVMLGAYAQNDRSK--EAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEA--QVLRM 562

Query: 652 -------RGMMVRRGVVKIPG-CSMIE-ANGIIHEFLAGD-----------RTHPQINEI 691
                  R   +   ++ + G C  +E A  + +E   GD             +    E+
Sbjct: 563 CILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 692 DNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            N+     ++++LEG  PD   +A  +D     TTL
Sbjct: 623 HNLF----RRMQLEGVIPDKFTLATTLDTCLASTTL 654



 Score =  159 bits (403), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 142/584 (24%), Positives = 262/584 (44%), Gaps = 107/584 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRL 145
           IF+ +E  N   +  ++ A  Q     +A  L++ ML  ++   ++YT   +  A A   
Sbjct: 82  IFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 146 SVFEGKLIHDHVLKAGFD----SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +  G+ IH  + + G +    +   V N +INMYA CG L  A  +F   P  D+VSW 
Sbjct: 142 DLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWT 201

Query: 202 SILAGYVN--------------------ADNV-------------EEAKFIYNKMPERNI 228
           ++   Y                      A NV              +  ++++ + E ++
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASL 261

Query: 229 ----IASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQNEMYEEALVL 281
               +ASN++I ++G+ G+   A  +FK M  +   DLVSW+A+IS   +   + +A+ +
Sbjct: 262 GFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F  +    +  + V ++++L+A A   V   A    H                       
Sbjct: 322 FRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHG---------------------- 359

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMIS 399
                    +++++G+  D++  N++IS Y KCG    A A+F  +  K DV+SW+TM+ 
Sbjct: 360 ---------RIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLG 410

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI---RKNG 456
                  F + ++ F  M   GI P++ + +++++AC++  ALD G+ IH+ I   R++ 
Sbjct: 411 ASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRD- 469

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             + S + T L+ MY K G +  A  VF       + + +WN ++  +A N  + ++   
Sbjct: 470 -YVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 515 FSEMKKSGVTPNEITFVGVLGACR--------HMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             EM + GV P+ ++F  VL +C          M +++ G+R   S   E  L       
Sbjct: 529 LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYR---SACLETAL------- 578

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
              + + GR   L++A  +   M    DV +W A++ A  ++ D
Sbjct: 579 ---ISMHGRCRELEQARSVFNEMDHG-DVVSWTAMVSATAENRD 618



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 131/312 (41%), Gaps = 40/312 (12%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           E+  +  +F  ++  +   +  M+ A  +    ++   L++ M    V  D +T      
Sbjct: 587 ELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLD 646

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
                 ++  GK+IH  V + G ++D+ V N L+NMY+ CGD   A   F+     DLVS
Sbjct: 647 TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706

Query: 200 WNSILAGYVNADNVEEAKFIYNKM------PER--------------------------- 226
           WN + A Y  A   +EA  ++ +M      P++                           
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAA 766

Query: 227 ------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 ++  +  ++ L+ + G + EA  LF+      +V  +A+I    Q+   EEA+ 
Sbjct: 767 ESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMY 339
           +F  M    V  D   +VS++SAC +  +V+ G +S   +    GI   +      + + 
Sbjct: 827 MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 340 SSCGEITTAEKL 351
              G++  AE++
Sbjct: 887 GRAGQLEHAEQI 898


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/655 (39%), Positives = 367/655 (56%), Gaps = 37/655 (5%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLE 92
           L + L+ C S  Q  Q+ S ++  GL ++TF  + LI          +    F     L 
Sbjct: 275 LVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTL- 333

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL--LAQASALR--LSVF 148
             N    N M+  Y +      A  L+ +M +   G  +YT  +  L Q    R  L VF
Sbjct: 334 --NPISCNIMVCGYAKAGQLDNARKLFDIMPDK--GCVSYTTMIMGLVQNECFREALEVF 389

Query: 149 EGKLIHDHVLKAGFDSDVYVNN--TLINMYAVC---GDLSAAR-------KLFDESPVLD 196
           +              SD  V N  TL+N+   C   G++   R       KLF E   L 
Sbjct: 390 KD-----------MRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEG--LV 436

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
           LVS N ++  Y     V EA+ ++++MPE N+++ N M+  + + G V  A  LF+ +P 
Sbjct: 437 LVSTN-LMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPD 495

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           KD++SW  +I  Y       EALV++  M+   + ++E++VV+++SAC  L  +  G  +
Sbjct: 496 KDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQL 555

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           H + VK G +CY  +Q  +IH Y++CG +  A   F+ G    L SWN+++SG++K   V
Sbjct: 556 HGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMV 615

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           ++AR +FD M E+DV SWSTMISGYAQ DQ    L LF +M   GI+P+E T+VSV SA 
Sbjct: 616 DQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAI 675

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--GVSS 494
             L  L +G+W H YI    + +N  L   LIDMY K G +++AL+ F+   +K   VS 
Sbjct: 676 ATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSP 735

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           WNA+I G A +G A   L++FS+M++  + PN ITF+GVL AC H GLV+ G R F  M 
Sbjct: 736 WNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMK 795

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             + +EP+ KHYGCMVDLLGRAG+L+EAEE+I SMPM  D+  WG LL AC+ HGD  +G
Sbjct: 796 SAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIG 855

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           ER    L  L P H G  VLLSNI+A  GRW+DV  VR  +  + + ++PGCS +
Sbjct: 856 ERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 34/284 (11%)

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E+ +VS L  C++ +    G  +H+L +K+G+     +QN+LI+MY+  G I  A+ LFD
Sbjct: 272 ELALVSALKYCSSSS---QGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFD 328

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
           A   L+ IS N M+ GY K G ++ AR LFD M +K  VS++TMI G  Q++ F E L +
Sbjct: 329 ACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEV 388

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH--------------------AYIR 453
           F +M+  G+ P++ TLV+VI AC+H   +   + IH                    AY  
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCL 448

Query: 454 KNGL-----------KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
            +G+           ++N +    +++ Y K G VD A E+F    +K V SW  +I G+
Sbjct: 449 CSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGY 508

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
            +     ++L M+  M +SG+  NEI  V ++ AC  +  + +G
Sbjct: 509 ILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDG 552


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 338/559 (60%), Gaps = 34/559 (6%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQ-NEMYEEALVLFMNMIDHRVMV-DEVVVVS 299
           GN+  A  +F ++P  ++ SW++LI  Y Q + + +E + LF  + +    V +   +  
Sbjct: 38  GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL ACA +T    G  VH+  +K G    + +Q +L++ Y  C EI              
Sbjct: 98  VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEI-------------- 143

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                    G+        AR +F+ M  +++V+W+ MISG+A+     E + LF EMQ 
Sbjct: 144 ---------GF--------ARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQK 186

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI+PD  TLVSV+SAC    ALD G W+HAYI K  +  +  L T L+DMY K GC++ 
Sbjct: 187 AGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIER 246

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A +VF     K  ++W+++I+GFA +GLA  +++ F +M ++ VTP+ +TF+ VL AC H
Sbjct: 247 AKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAH 306

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV  G R F S++ E  +EP+ +HYGC VDLL R+G+++EA  +  +M + P+ ATW 
Sbjct: 307 GGLVSRGRR-FWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWR 365

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           +LL  CKK     +GE V R L+EL+P +   ++++SN+++S  +W+ + E+R +M  + 
Sbjct: 366 SLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKC 425

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           +  +PGCS IE +G++HEF+ GD++HP++  +   ++EM+ +++  GY P   +V   + 
Sbjct: 426 IKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVV 485

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            EEKE  L  HSE+ AIA+GL+    P  IR++KNLR+C DCH   K IS+ ++REI+VR
Sbjct: 486 DEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVR 545

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR RFH F  G+CSC DFW
Sbjct: 546 DRVRFHKFIKGTCSCKDFW 564



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 196/412 (47%), Gaps = 54/412 (13%)

Query: 62  TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLYK 120
            FA S+++ F   L PF  ++Y+  +FA +  PN F +N++++ Y Q   + ++ I L+K
Sbjct: 22  AFALSKIVAFCA-LSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFK 80

Query: 121 LMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
            +      V N +T   + +A A+  +  EG  +H HVLK GF S ++V  +L+N Y  C
Sbjct: 81  KLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKC 140

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA--------- 230
            ++  ARK+F+E PV +LV+W ++++G+     V+EA  ++ +M +  I           
Sbjct: 141 EEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVV 200

Query: 231 ------------------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                         S +++ ++ + G +  A ++F  MP KD  
Sbjct: 201 SACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTT 260

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +WS++I  +  + + ++A+  F  M++  V  D V  ++VLSACA+  +V  G    +L 
Sbjct: 261 AWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLM 320

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISG-----YLKCG 374
           ++ GIE  +      + +    G +  A ++        +  +W S++ G      L  G
Sbjct: 321 LEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLG 380

Query: 375 SVEKARAL--FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            +  AR L   + +  ++ +  S + S  +Q ++ SE   +   M+   I+P
Sbjct: 381 EI-VARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKV---MKEKCIKP 428



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 15/224 (6%)

Query: 17  SVNAKPIF---------KPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFA 64
           +++ +PIF          P  N   L   L+ C    +F +  Q+ S ++  G  +  F 
Sbjct: 70  TLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFV 129

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
            + L+ F        E+ ++ K+F  +   N   +  M+  + +     +A+ L++ M  
Sbjct: 130 QTSLVNFYGKCE---EIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQK 186

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
             +  D  T   +  A A+  ++  G  +H ++ K    +D+ ++  L++MYA CG +  
Sbjct: 187 AGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIER 246

Query: 185 ARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           A+++F   PV D  +W+S++ G+      ++A   + +M E  +
Sbjct: 247 AKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEV 290


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 347/578 (60%), Gaps = 37/578 (6%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           N++   ++I ++G+ G + +A   F+E+  K+ V+W+A+++ Y+ +    EAL LF  M 
Sbjct: 65  NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMC 124

Query: 287 DHR--VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY--INLQNALIHMYSSC 342
           +       D+      + AC+NL  ++ G  +H +  + G E +  + +  AL++MYS  
Sbjct: 125 ERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYS-- 182

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI-EKDVVSWSTMISGY 401
                                        KCG +E+AR +FD++  + D V W+ MI+ Y
Sbjct: 183 -----------------------------KCGDLEEARKVFDSIRHDADSVCWNAMIAAY 213

Query: 402 AQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
           AQH +  + L L+  M     + P + T V+VI  C  L AL QG+ IHA +R      N
Sbjct: 214 AQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDAN 273

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
            ++   L+ MY K GC+D AL+VFH  + K   SWN +I  +A +G +D++L ++ EM  
Sbjct: 274 LLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDL 333

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            GV P E+TFVG+L AC H GLV +G  +F  M  +HR++P+  H+GC++DLLGR G L 
Sbjct: 334 QGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLA 393

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
           EAE +++SMP+  +   W +LLGACK HGD + G R   ++V+  P   G +VLLSNI+A
Sbjct: 394 EAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYA 453

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + GRW DV ++R +M  RGV K PG S IE   ++HEF++GDR+HPQ  EI   L +M +
Sbjct: 454 AAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVE 513

Query: 701 KLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICND 760
           ++K  GY PDT  V  D+++EEKE  L  HSEKLAI +G + +   + +RI+KNLR+C D
Sbjct: 514 EMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLD 573

Query: 761 CHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           CHTA KF+SR   R+IVVRD  RFH F++GSCSC D+W
Sbjct: 574 CHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/540 (22%), Positives = 217/540 (40%), Gaps = 125/540 (23%)

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP--LLAQASALRLSVFEGKLIHDHVLKA 160
           M A+       +A+  ++ M  +    D  T+   L A A     ++ +G+ IH +   +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G   +V V   +I+MY  CG L  AR  F+E    + V+WN+++  Y       EA  ++
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 221 NKMPER-------------------------------------------NIIASNSMIVL 237
            +M ER                                           +++   +++ +
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 238 FGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV-DEV 295
           + + G++ EA ++F  +    D V W+A+I+ Y Q+   ++AL L+ +M D   +   + 
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
             V+V+  CA L+ +K G ++HA       +  + + NAL+HMY  CG +  A  +F + 
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              D ISWN++I                               S YA H    + L L+ 
Sbjct: 301 KLKDEISWNTII-------------------------------SSYAYHGHSDQALLLYQ 329

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           EM   G++P E T V ++SAC+H                                    G
Sbjct: 330 EMDLQGVKPTEVTFVGLLSACSH-----------------------------------GG 354

Query: 476 CVDNALEVFHGTEEK-----GVSSWNALIIGFAMNG-LADKSLEMFSEMKKSGVTPNEIT 529
            V + L+ F+  ++       V  +  +I      G LA+  L     +K   +  N + 
Sbjct: 355 LVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAEL----VLKSMPIQANAVQ 410

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           ++ +LGAC+  G +  G R  + ++   R+   S  Y  + ++   AG  K+ E++ + M
Sbjct: 411 WMSLLGACKTHGDLKRGVRAADQVVD--RVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIM 468



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA--LDQGKWIHAYIRKN 455
           ++ ++ +   SE L  F  M   G RPD  T   +++A   + A  +DQG+ IH Y R +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           GL  N ++GT +I MY K G +D+A   F   + K   +WNA++  + ++G   ++LE+F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 516 SEM--KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV--- 570
            EM  +     P++ +F   + AC ++  +++G R  + M+   R E    H   +V   
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQG-REIHEML---RREGKELHKDVVVGTA 176

Query: 571 --DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             ++  + G L+EA ++ +S+    D   W A++ A  +HG
Sbjct: 177 LLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHG 217



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 43/224 (19%)

Query: 86  KIF-AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASAL 143
           K+F +     +   +N M+ AY Q    +QA+ LY+ M +  ++     T+  +    A 
Sbjct: 192 KVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAE 251

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
             ++ +G+ IH  V    FD+++ V+N L++MY  CG L  A  +F    + D +SWN+I
Sbjct: 252 LSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 311

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIAS-------------------------------- 231
           ++ Y    + ++A  +Y +M  + +  +                                
Sbjct: 312 ISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHR 371

Query: 232 --------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALI 266
                     +I L GR G +AEA  + K MP + + V W +L+
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLL 415


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 332/551 (60%), Gaps = 33/551 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G++  A ++F EMPK  +  W+ L   Y +N++  E+++L+  M D  V  DE     V+
Sbjct: 57  GDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVV 116

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            A + L V+  G S+HA  +K G EC   +   L+ MY   GE+++AE            
Sbjct: 117 KAISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAE------------ 164

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                               LF++M  KD+V+W+  I+   Q    +  L  F +M    
Sbjct: 165 -------------------FLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADA 205

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           ++ D  T+VS++SAC  L +LD G+ I+   RK  ++ N I+    +DM++K G  + A 
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAAR 265

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
            +F   +++ V SW+ +I+G+AMNG + ++L +F+ M+  G+ PN +TF+GVL AC H G
Sbjct: 266 VLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 542 LVDEGHRHFNSMIQ--EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           LV+EG R+F+ M++  +  LEP  +HY CMVDLLGR+G+L+EA E I+ M + PD   WG
Sbjct: 326 LVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWG 385

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALLGAC  H D  +G++V   LVE  PD   +HVLLSNI+A+ G+WD V +VR  M + G
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
             K+   S +E +G IH F  GD +HPQ   I   LDE+ KK++  GY PDT  V  D++
Sbjct: 446 TKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVE 505

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            EEKE++L  HSEKLAIAFGLI     +PIR+MKNLR C+DCH  +KF+SR   REI++R
Sbjct: 506 MEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMR 565

Query: 780 DRHRFHHFKHG 790
           D++RFHHF++G
Sbjct: 566 DKNRFHHFRNG 576



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 165/392 (42%), Gaps = 74/392 (18%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K IH  V++ GF     +   L+    + GD+  AR++FDE P   +  WN++  GYV  
Sbjct: 28  KKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRN 87

Query: 211 DNVEEAKFIYNKMPERNI---------------------------------------IAS 231
               E+  +Y KM +  +                                       I +
Sbjct: 88  QLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVA 147

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             +++++ + G ++ A  LF+ M  KDLV+W+A I+   Q      AL  F  M    V 
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D   VVS+LSAC  L  +  G  ++  A K  IEC I ++NA + M+  CG    A  L
Sbjct: 208 FDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVL 267

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     +++SW++MI G                               YA +    E L
Sbjct: 268 FDDMKQRNVVSWSTMIVG-------------------------------YAMNGDSGEAL 296

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKN--GLKINSILGTTLI 468
           +LF  MQ+ G+RP+  T + V+SAC+H   +++GK +    +R N   L+        ++
Sbjct: 297 ALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMV 356

Query: 469 DMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           D+  + G ++ A E       E     W AL+
Sbjct: 357 DLLGRSGLLEEAYEFIKKMRVEPDTGIWGALL 388



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 44/320 (13%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           KQ  +I + +I TG        S L +   +L+   +M Y+ ++F  +  P  F++NT+ 
Sbjct: 25  KQLKKIHAVVIRTGFSEKN---SLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLF 81

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGF 162
           + Y++  +P +++ LYK M +  V  D +TYP + +A + +L V   G  +H HVLK GF
Sbjct: 82  KGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAIS-QLGVLPCGVSLHAHVLKNGF 140

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +    V   L+ MY   G+LS+A  LF+   V DLV+WN+ +A  V   N   A   +NK
Sbjct: 141 ECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNK 200

Query: 223 MP---------------------------------------ERNIIASNSMIVLFGRKGN 243
           M                                        E NII  N+ + +  + G+
Sbjct: 201 MCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGS 260

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
              A  LF +M ++++VSWS +I  Y  N    EAL LF  M +  +  + V  + VLSA
Sbjct: 261 TEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSA 320

Query: 304 CANLTVVKAGTSVHALAVKI 323
           C++  +V  G    +L V++
Sbjct: 321 CSHAGLVNEGKRYFSLMVRL 340



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 6/251 (2%)

Query: 364 NSMISGYLK----CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           NS+++  L+     G +  AR +FD M +  +  W+T+  GY ++    E++ L+ +M+ 
Sbjct: 43  NSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRD 102

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+RPDE T   V+ A + L  L  G  +HA++ KNG +   I+ T L+ MYMK G + +
Sbjct: 103 LGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSS 162

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A  +F   + K + +WNA I      G +  +LE F++M    V  +  T V +L AC  
Sbjct: 163 AEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQ 222

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
           +G +D G   ++   +E  +E N       +D+  + G  + A  L + M    +V +W 
Sbjct: 223 LGSLDIGEEIYDRARKEE-IECNIIVENARLDMHLKCGSTEAARVLFDDMKQR-NVVSWS 280

Query: 600 ALLGACKKHGD 610
            ++     +GD
Sbjct: 281 TMIVGYAMNGD 291



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 10/195 (5%)

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           Q K IHA + + G    + L T L++  + +G +  A +VF    +  +  WN L  G+ 
Sbjct: 26  QLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYV 85

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            N L  +S+ ++ +M+  GV P+E T+  V+ A   +G++  G       +  H L+   
Sbjct: 86  RNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCG-----VSLHAHVLKNGF 140

Query: 564 KHYGC----MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           +  G     +V +  + G L  AE L ESM +  D+  W A +  C + G+  +      
Sbjct: 141 ECLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFIAVCVQTGNSAIALEYFN 199

Query: 620 KLVELQPDHDGFHVL 634
           K+       D F V+
Sbjct: 200 KMCADAVQFDSFTVV 214



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 18/243 (7%)

Query: 76  LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
           + F E+S +  +F  ++  +   +N  +   +Q      A+  +  M  + V  D++T  
Sbjct: 155 MKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVV 214

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
            +  A     S+  G+ I+D   K   + ++ V N  ++M+  CG   AAR LFD+    
Sbjct: 215 SMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQR 274

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLF 251
           ++VSW++++ GY    +  EA  ++  M       N +    ++      G V E  R F
Sbjct: 275 NVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYF 334

Query: 252 KEM---------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
             M         P+K+   ++ ++    ++ + EEA      M   RV  D  +  ++L 
Sbjct: 335 SLMVRLNDKNLEPRKE--HYACMVDLLGRSGLLEEAYEFIKKM---RVEPDTGIWGALLG 389

Query: 303 ACA 305
           ACA
Sbjct: 390 ACA 392


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/814 (30%), Positives = 421/814 (51%), Gaps = 87/814 (10%)

Query: 32  ILETHLQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY---SF 85
           +  + L+ C  F   +   ++  ++I  G  +D    + L      L  + EMS    + 
Sbjct: 102 VFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSL------LCMYGEMSCLDDAC 155

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K F  +   +   +++++  ++Q     + + ++  M++  V  D+ T   + +A +   
Sbjct: 156 KAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELG 215

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+  G+ +H +V++   +S+  +NN+LI MY   GDL +A +LF+  P      W  +++
Sbjct: 216 SLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMIS 275

Query: 206 GYVNADNVEEAKFIYNKM-----------------------------------------P 224
            Y  +   +EA  ++ KM                                         P
Sbjct: 276 CYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDP 335

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E + +   +++ L+   GN+ +  ++F+ + +K ++SW+ LIS + +N   EEAL+LF+ 
Sbjct: 336 ELDFLGP-ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQ 394

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    +M D   + S LSAC  ++  + G  +H   +K G                    
Sbjct: 395 MQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-------------------- 434

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                       N +    N++I  Y KCG V  A  +F+ + EK +V+W++MI G++Q+
Sbjct: 435 ------------NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQN 482

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
               E ++LF +M  + ++ D+ T +SVI AC+HL  L++GKW+H  +   GL+ +S L 
Sbjct: 483 GYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 542

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           T L DMY K G +  A  VF    E+ + SW+ +I G+ M+G  + ++ +F++M  SG+ 
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 602

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           PN+ITF+ +L AC H G V+EG  +FNSM  E  +EP   H+ CMVDLL RAG L  A +
Sbjct: 603 PNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQ 661

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           +I S+P   + + WGALL  C+ H   ++ + + + L+++     G++ LLSNI+A +G 
Sbjct: 662 IITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGT 721

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           WD   +VR MM  +G+ K+PG S IE +  I+ F  GD +H Q  +I   L+     +  
Sbjct: 722 WDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHA 781

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
           + Y  +         +  KE  +  HSEKLAIAFG+I   P   +RI KNLR+C DCH+ 
Sbjct: 782 QVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSF 841

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           AK  S+   REI++RD +RFH F++GSCSC D+W
Sbjct: 842 AKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 163/614 (26%), Positives = 299/614 (48%), Gaps = 78/614 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
            ++C +    TQ+ + + +TGL     A+++LI+    +  F     S ++F     P+ 
Sbjct: 8   FRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIF---ESSKRVFDTFPKPDS 64

Query: 97  FIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
           F++  +++ Y+     ++A+ LY +++  +   + N+ +P + +A +    +  G  +H 
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHG 124

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            V+K GF+SD  V  +L+ MY     L  A K FD  P+ D+V+W+SI+  +V      E
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASE 184

Query: 216 AKFIYNKM------P---------------------------------ERNIIASNSMIV 236
              ++++M      P                                 E N   +NS+IV
Sbjct: 185 GLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIV 244

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++G+ G++  A RLF+ +P +    W+ +ISCY Q+  ++EAL +F  M + ++  ++V 
Sbjct: 245 MYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVT 304

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIHMYSSCGEITTAEKLFDAG 355
           +V VL ACA L  VK G SVH   ++  ++  ++ L  AL+ +Y+  G +    K+F+  
Sbjct: 305 MVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETI 364

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
               ++SWN++IS + + G  E                               E L LF+
Sbjct: 365 KEKTILSWNTLISIFTRNGQPE-------------------------------EALLLFV 393

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +MQ  G+ PD  +L S +SAC  +     G  IH YI K G   N  +   LIDMY K G
Sbjct: 394 QMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCG 452

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            V +A ++F   +EK + +WN++I GF+ NG + +++ +F +M  + V  +++TF+ V+ 
Sbjct: 453 FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 512

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H+G +++G    + +I  + L  +S     + D+  + G L+ A  + + M     +
Sbjct: 513 ACSHLGYLEKGKWVHHKLIM-YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSI 570

Query: 596 ATWGALLGACKKHG 609
            +W  ++     HG
Sbjct: 571 VSWSVMIAGYGMHG 584



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 10/330 (3%)

Query: 338 MYSSCGEITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           ++  C   TT  +L    F  G +    +   +I  Y + G  E ++ +FD   + D   
Sbjct: 7   LFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFM 66

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           W  +I  Y     F E +SL+ EM +    +       SV+ AC+    L  G  +H  +
Sbjct: 67  WGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRV 126

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G + ++++ T+L+ MY ++ C+D+A + F     + V +W+++++ F  NG A + L
Sbjct: 127 IKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGL 186

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           +MFS+M    V P+ +T + V  AC  +G +  G R  +  +    +E N+     ++ +
Sbjct: 187 DMFSQMISEAVEPDSVTMLSVTEACSELGSLRLG-RSVHGYVVRREIESNASLNNSLIVM 245

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
            G+ G L  AE L E++P     A W  ++    + G  +    V  K+ E  ++P+   
Sbjct: 246 YGKLGDLYSAERLFENVPCRM-TAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVT 304

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
              +L    A  GR  +   V G ++RR +
Sbjct: 305 MVGVLCAC-ARLGRVKEGRSVHGFVIRRAM 333


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/786 (31%), Positives = 411/786 (52%), Gaps = 87/786 (11%)

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
           LI   +     I+   +F         +   +N M+ A+++    ++A+ L++ M  +  
Sbjct: 182 LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGA 241

Query: 128 GVDN---YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184
              N   +   L +   A  LS+ + + IH  ++ AG + + +V   L++ Y   G L  
Sbjct: 242 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDD 301

Query: 185 ARKLF----DESPVLDLVSWNSIL-AGYVN-----------ADNVEEAK----------- 217
           A ++F    DE P   LV+ ++++ A + N           A N+E  K           
Sbjct: 302 AWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLN 361

Query: 218 ------------FIYNKMPE-----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                       F+  +  E     R+ +   +++  + R  ++  A   F  +   D+V
Sbjct: 362 ACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVV 421

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL---TVVKAGTSVH 317
           SW+A+ + Y Q+    EALVLF  M+   V       ++ L+ACA     T    G  + 
Sbjct: 422 SWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQ 481

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
           +L  + G+E    + NA ++MY+                               KCGS+ 
Sbjct: 482 SLLEEAGLEGDTAVANATLNMYA-------------------------------KCGSLA 510

Query: 378 KARALFDAM--IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVIS 434
            ARA+F+ +    +D ++W++M++ Y  H    E   LF  M+    ++P++ T V+V+ 
Sbjct: 511 DARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 570

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF--HGTEEKGV 492
           A T   ++ QG+ IHA +  NG + ++++   L++MY K G +D+A  +F    + ++ V
Sbjct: 571 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 630

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            +W +LI G+A  G A+++L++F  M++ GV PN +TF+  L AC H G +++G    + 
Sbjct: 631 IAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSG 690

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M  +H + P SKH+ C+VDLLGR G L EAE+L+E    + DV TW ALL ACK   + E
Sbjct: 691 MTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQA-DVITWMALLDACKNSKELE 749

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            GER   ++++L P+    +++L++++A+ GRW++   +R  M+ +G+   PGCS +E N
Sbjct: 750 RGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 809

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
             +H F AGD++HP+  EI   L+ +   +K  GY  DT  V  D+ QE KE  L RHSE
Sbjct: 810 QELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSE 869

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAFGL++    +P+R++KNLR+C+DCHTA K IS+   R+I++RD  R+HHF  G+C
Sbjct: 870 KLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTC 929

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 930 SCGDYW 935



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 157/661 (23%), Positives = 280/661 (42%), Gaps = 108/661 (16%)

Query: 37  LQKCQSFKQFTQ-------ILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           LQ C   +   Q       ILS+ I   L   +F AS LI          E       FA
Sbjct: 50  LQACGRLRALKQGQRLHAHILSRRI--DLHNHSFLASDLIVMHAKCGNLAEAEALADRFA 107

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            +     +    M+RA+++   P +A+ L+  M    V  + +    L  A +   ++  
Sbjct: 108 SV-----YSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAA 159

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL---DLVSWNSILAG 206
           G+ IH  +    F+ +  + N LI+MY+ CG L  A++ FD  P     D+V+WN++++ 
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 207 YVNADNVEEAKFIYNKMP------------------------------------------ 224
           ++   +  EA  ++  M                                           
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 279

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLF----KEMPKKDLVSWSALISCYEQNEMYEEALV 280
           ER      +++  +G+ G++ +A  +F     E P   LV+ SA+IS   QN   +E+L 
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLR 339

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIHMY 339
           LF  M         V +VSVL+AC+ L V  A   V   A+++      N L   L+  Y
Sbjct: 340 LFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTY 399

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           +   ++  A   FDA  + D++SWN+M + YL                            
Sbjct: 400 ARSNDLPRARATFDAIQSPDVVSWNAMAAAYL---------------------------- 431

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL---VALDQGKWIHAYIRKNG 456
              QH +  E L LF  M   G+RP  AT ++ ++AC       A   GK I + + + G
Sbjct: 432 ---QHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 488

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           L+ ++ +    ++MY K G + +A  VF       +   +WN+++  +  +GL  ++ E+
Sbjct: 489 LEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFEL 548

Query: 515 FSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           F  M+    V PN++TFV VL A      + +G R  ++ +  +  E ++     ++++ 
Sbjct: 549 FQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG-REIHARVVSNGFESDTVIQNALLNMY 607

Query: 574 GRAGMLKEAEELIE-SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDG 630
            + G L +A+ + + S     DV  W +L+    ++G  E   ++   + +  ++P+H  
Sbjct: 608 AKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVT 667

Query: 631 F 631
           F
Sbjct: 668 F 668



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 237/527 (44%), Gaps = 81/527 (15%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFD--SDVYVNNTLINMYAVCGDLSAARKLFD 190
           TY  L QA     ++ +G+ +H H+L    D  +  ++ + LI M+A CG+L+ A  L D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 191 E-----SPVLDLVSWNS---------------------ILAGYVNA----DNVEEAKFIY 220
                 S    + +W                        L   VNA     N+   + I+
Sbjct: 105 RFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVRPNCHALIALVNACSCLGNLAAGRRIH 164

Query: 221 NKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMP---KKDLVSWSALISCYEQNE 273
           +++ +R    N +  N++I ++ + G++ +A + F  +P   K+D+V+W+A+IS + +N 
Sbjct: 165 SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 224

Query: 274 MYEEALVLFMNM-IDHRVMVDEVVVVSVLSAC--ANLTVVKAGTSVHALAVKIGIECYIN 330
              EAL LF +M  D     + V  VSVL +C  A L  ++   ++H   V  GIE    
Sbjct: 225 SAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAF 284

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           ++ AL+  Y   G +  A ++F                  L+ G  E + +L        
Sbjct: 285 VRTALVDSYGKLGSLDDAWEVF------------------LRKGDEEPSTSL-------- 318

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            V+ S MIS   Q+    E+L LF  M   G +P   TLVSV++AC+ L    Q     A
Sbjct: 319 -VTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSML----QVGSATA 373

Query: 451 YIRKNGLKI-----NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           ++ +  +++     +++LGTTL+  Y +   +  A   F   +   V SWNA+   +  +
Sbjct: 374 FVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQH 433

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM--GLVDEGHRHFNSMIQEHRLEPNS 563
             + ++L +F  M   GV P+  TF+  L AC            +   S+++E  LE ++
Sbjct: 434 HRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDT 493

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHG 609
                 +++  + G L +A  + E + P   D  TW ++L A   HG
Sbjct: 494 AVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHG 540



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 24/249 (9%)

Query: 427 ATLVSVISACTHLVALDQGKWIHAYI--RKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           +T   ++ AC  L AL QG+ +HA+I  R+  L  +S L + LI M+ K G +  A  + 
Sbjct: 44  STYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEAL- 102

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
                  V S  A+I  +  +G  DK++E+F  M+   V PN    + ++ AC  +G + 
Sbjct: 103 -ADRFASVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLA 158

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP--DVATWGALL 602
            G R  +S I +   E NS     ++ +  + G L +A++  + +P +   DV TW A++
Sbjct: 159 AG-RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDG---------FHVLLSNIHASKGRWDDVLEVRG 653
            A  ++G      ++ R +     D DG           VL S + A     +DV  + G
Sbjct: 218 SAFLRNGSAREALQLFRDM-----DRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHG 272

Query: 654 MMVRRGVVK 662
            +V  G+ +
Sbjct: 273 RIVGAGIER 281


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 327/551 (59%), Gaps = 35/551 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLT 308
           LF ++P      +++LI           AL ++  M+       +   +   L ACA + 
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
               G  +HA A++ G+     +Q  L+++Y+                            
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYA---------------------------- 221

Query: 369 GYLKCGSVEKARALFDAMI-EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
              KC  V  AR +FD M  +K++V+WS M+SGY++    +E L LF EMQ  G+ PDE 
Sbjct: 222 ---KCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEV 278

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T+VSVISAC    ALD GKW+HAYI + G+ ++  L T LIDMY K G ++ A  VF   
Sbjct: 279 TMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAM 338

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
            EK   +W+A+I+GFA++GL + +L +FS M +  V PN +TF+GVL AC H GLV++G 
Sbjct: 339 VEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 398

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R++ S++Q   ++P+ ++YGCMVDLL R+G+L +A   +  MP+SP+   W  LL ACK 
Sbjct: 399 RYW-SIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKS 457

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
               ++ E   ++L+EL+P +   +VLLSN++AS  +WD V  +R  M  + V  I G S
Sbjct: 458 SNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 517

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            IE NG +HEF+  D +HP+I EI  +L EMA +++  G+ P T  V  D+ +EEKE  L
Sbjct: 518 SIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAAL 577

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            +HSE+LAIA+GL+    P+ IR++KNLR C DCH  AK IS+A++REIVVRDR RFH F
Sbjct: 578 CQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKF 637

Query: 788 KHGSCSCMDFW 798
             GSCSC DFW
Sbjct: 638 MGGSCSCKDFW 648



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 173/417 (41%), Gaps = 95/417 (22%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRL 145
           +F  +  P  F +N+++RA +       A+ +Y+ ML       N +T     +A A   
Sbjct: 131 LFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +  EG+ +H   L+ G                       A   + ++ +L+L        
Sbjct: 190 APGEGRQLHAQALRQGL----------------------ATSAYVQTGLLNL-------- 219

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            Y   + V  A+ +++ M                  G+             K+LV+WSA+
Sbjct: 220 -YAKCEQVALARTVFDGM-----------------AGD-------------KNLVAWSAM 248

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +S Y +  M  EAL LF  M    V  DEV +VSV+SACA    +  G  VHA   + GI
Sbjct: 249 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 308

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + L  ALI MY+                               KCG +E+AR +FDA
Sbjct: 309 TVDLELSTALIDMYA-------------------------------KCGLIERARGVFDA 337

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M+EKD  +WS MI G+A H    + L LF  M    +RP+  T + V+SAC H   ++ G
Sbjct: 338 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 397

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIG 501
           +   + ++  G+K +      ++D+  + G +D+A     G      S  W  L++ 
Sbjct: 398 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVA 454



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 135/261 (51%), Gaps = 7/261 (2%)

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTH 438
           R LFD + +     ++++I         +  L+++  M   G  RP+  TL   + AC  
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNA 497
           + A  +G+ +HA   + GL  ++ + T L+++Y K   V  A  VF G   +K + +W+A
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           ++ G++  G+ +++L +F EM+  GV P+E+T V V+ AC   G +D G +  ++ I   
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRK 306

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            +  + +    ++D+  + G+++ A  + ++M +  D   W A++     HG  E    +
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 365

Query: 618 GRKLVEL--QPDHDGFHVLLS 636
             +++EL  +P++  F  +LS
Sbjct: 366 FSRMLELKVRPNNVTFIGVLS 386


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 327/551 (59%), Gaps = 35/551 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLT 308
           LF ++P      +++LI           AL ++  M+       +   +   L ACA + 
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
               G  +HA A++ G+     +Q  L+++Y+                            
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYA---------------------------- 172

Query: 369 GYLKCGSVEKARALFDAMI-EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
              KC  V  AR +FD M  +K++V+WS M+SGY++    +E L LF EMQ  G+ PDE 
Sbjct: 173 ---KCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEV 229

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           T+VSVISAC    ALD GKW+HAYI + G+ ++  L T LIDMY K G ++ A  VF   
Sbjct: 230 TMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAM 289

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
            EK   +W+A+I+GFA++GL + +L +FS M +  V PN +TF+GVL AC H GLV++G 
Sbjct: 290 VEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 349

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
           R++ S++Q   ++P+ ++YGCMVDLL R+G+L +A   +  MP+SP+   W  LL ACK 
Sbjct: 350 RYW-SIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKS 408

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
               ++ E   ++L+EL+P +   +VLLSN++AS  +WD V  +R  M  + V  I G S
Sbjct: 409 SNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 468

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            IE NG +HEF+  D +HP+I EI  +L EMA +++  G+ P T  V  D+ +EEKE  L
Sbjct: 469 SIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAAL 528

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            +HSE+LAIA+GL+    P+ IR++KNLR C DCH  AK IS+A++REIVVRDR RFH F
Sbjct: 529 CQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKF 588

Query: 788 KHGSCSCMDFW 798
             GSCSC DFW
Sbjct: 589 MGGSCSCKDFW 599



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 173/417 (41%), Gaps = 95/417 (22%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRL 145
           +F  +  P  F +N+++RA +       A+ +Y+ ML       N +T     +A A   
Sbjct: 82  LFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +  EG+ +H   L+ G                       A   + ++ +L+L        
Sbjct: 141 APGEGRQLHAQALRQGL----------------------ATSAYVQTGLLNL-------- 170

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
            Y   + V  A+ +++ M                  G+             K+LV+WSA+
Sbjct: 171 -YAKCEQVALARTVFDGM-----------------AGD-------------KNLVAWSAM 199

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +S Y +  M  EAL LF  M    V  DEV +VSV+SACA    +  G  VHA   + GI
Sbjct: 200 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 259

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + L  ALI MY+                               KCG +E+AR +FDA
Sbjct: 260 TVDLELSTALIDMYA-------------------------------KCGLIERARGVFDA 288

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
           M+EKD  +WS MI G+A H    + L LF  M    +RP+  T + V+SAC H   ++ G
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 348

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIG 501
           +   + ++  G+K +      ++D+  + G +D+A     G      S  W  L++ 
Sbjct: 349 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVA 405



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 135/261 (51%), Gaps = 7/261 (2%)

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTH 438
           R LFD + +     ++++I         +  L+++  M   G  RP+  TL   + AC  
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNA 497
           + A  +G+ +HA   + GL  ++ + T L+++Y K   V  A  VF G   +K + +W+A
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           ++ G++  G+ +++L +F EM+  GV P+E+T V V+ AC   G +D G +  ++ I   
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRK 257

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            +  + +    ++D+  + G+++ A  + ++M +  D   W A++     HG  E    +
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 618 GRKLVELQ--PDHDGFHVLLS 636
             +++EL+  P++  F  +LS
Sbjct: 317 FSRMLELKVRPNNVTFIGVLS 337


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/785 (32%), Positives = 404/785 (51%), Gaps = 77/785 (9%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
           GLI D F  + +I          E   + ++F  +   N   +N+++R + +     +A 
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDE---AVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296

Query: 117 CLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174
             ++ +L +  G+  D  T   L    +   +V  G +IH   +K G   ++ V N LI+
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALID 356

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----------- 223
           MY+ CG LS A  LF +     +VSWNS++  Y     V E   +  KM           
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 224 -----------PERNIIA-------------------SNSMIVLFGRKGNVAEACRLFKE 253
                       E  +++                   +N+ I  + + G++  A  +F  
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFG 476

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M  K + SW+A+I  + QN    +AL  +  M    ++ D+  +VS+L AC  L +++ G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H   ++ G+E      N+ + +                          S++S Y  C
Sbjct: 537 KEIHGFVLRNGLE-----MNSFVAV--------------------------SLLSLYFHC 565

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                 R  F+ M +K+ V W+ M+SGY+Q++  +E LSLF +M   G+ PDE  + S++
Sbjct: 566 SKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASIL 625

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC+ L AL  GK +H +  KN L  ++ +  +L+DMY K G + ++  +F+    K V+
Sbjct: 626 GACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVA 685

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWN +I GF ++G  +K++E+F +MK+S   P+  TF+GVL AC H GLV EG  +   M
Sbjct: 686 SWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQM 745

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
              ++LEP  +HY C++D+LGRAG L EA   I  MP  PD   W +LL +   + D EM
Sbjct: 746 QTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEM 805

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE+   KL+ L+ +    ++LLSN++A+ G+WD V  VR  M    + K  GCS IE  G
Sbjct: 806 GEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRG 865

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            ++ F+AG+ ++P  +EI  M + + K++   GY PD   V  ++++ EK   L  HSEK
Sbjct: 866 KVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEK 925

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           +AI FG +       +RI KNLRIC DCH AAK+IS+A  REIV+RD  RFHHFK G CS
Sbjct: 926 VAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICS 985

Query: 794 CMDFW 798
           C D+W
Sbjct: 986 CGDYW 990



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 165/664 (24%), Positives = 295/664 (44%), Gaps = 105/664 (15%)

Query: 37  LQKCQSFK--QFTQILSQMIL--TGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFL 91
           LQKC  +K  +  + L +M+   +    D    +RLI  +S    P      S  +F  L
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPL----ESRLVFDRL 169

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
            + N F +N ++  Y++  +  +AI    +L+       DN+T+P L +A   +  +  G
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG 229

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H   +K G   D++V N +I +Y  CG L  A +LFD+ P  +L+SWNS++ G+   
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSEN 289

Query: 211 DNVEEAKFIYNKMPERN-----------------------------------------II 229
               EA   +  + E                                           ++
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDH 288
             N++I ++ + G ++EA  LF+++  K +VSW+++I  Y +     E   L   M ++ 
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE 409

Query: 289 RVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            +M V+EV ++++L AC   + + +  ++H  +++   +    + NA I  Y+ CG +  
Sbjct: 410 ELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVF 469

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           AE +F   +   + SWN++I G+ + G   KA                            
Sbjct: 470 AEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKA---------------------------- 501

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              L  + EM   GI PD+ ++VS++ AC  L  L  GK IH ++ +NGL++NS +  +L
Sbjct: 502 ---LDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + +Y            F    +K    WNA++ G++ N L +++L +F +M   G+ P+E
Sbjct: 559 LSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEAEELI 586
           I    +LGAC  +  +  G       ++   +E N     C ++D+  ++G L  ++ + 
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDN--FVACSLMDMYAKSGFLGHSQRIF 676

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL---------QPDHDGF-HVLLS 636
             +    +VA+W  ++     HG        G K VEL         QPD   F  VL +
Sbjct: 677 NRLN-GKEVASWNVMITGFGVHGQ-------GNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 637 NIHA 640
             HA
Sbjct: 729 CCHA 732


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 343/570 (60%), Gaps = 33/570 (5%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKK--DLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           +N +I ++G+ G +AEA  +F ++ +K  D++SW+ +I  Y QN + +EAL LF  M   
Sbjct: 62  ANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLE 121

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V+ ++V +++ + ACA+L   + G  VHA+AV   +E    +  +L++M+         
Sbjct: 122 GVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFG-------- 173

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
                                  KC +V+ ARA+FD++  K++V+W+ M++ Y+Q+ Q  
Sbjct: 174 -----------------------KCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCK 210

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           + + +F  M   G++PD  T +++I AC  L A  +G+ +H  I  +G+ ++  LGT ++
Sbjct: 211 KAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVM 270

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
             Y K G +DNA  +F    +K   +W+A++  +A NG   +++E++ EM + G+  N I
Sbjct: 271 HFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGI 330

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+G+L AC H G   +G  +F SMI++  + P  +HY  ++DLLGR+G L+ +E+LI S
Sbjct: 331 TFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINS 390

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP  PD + W ALLGAC+ HGD + G R+   + EL P+  G ++LLSN+++S GR D+ 
Sbjct: 391 MPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEA 450

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
              R  M  RG+ K PG S IE    +HEF+A  + HPQ+  I   ++ +  ++K  GY 
Sbjct: 451 RRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYV 510

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
            D   V  D+++EEKE  L+ HSE+LAIAFGLI+  P   + I+KNLR+C DCH A K I
Sbjct: 511 ADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAI 570

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S+   R+IVVRD  RFHHF++G+CSC D+W
Sbjct: 571 SKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 137/261 (52%), Gaps = 4/261 (1%)

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK--DVVSWSTMISGYAQHDQFS 408
           L   G+  D +  N +I  Y KCG + +AR++FD + EK  DV+SW+ +I  Y Q+    
Sbjct: 50  LVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGK 109

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E L LF  M   G+  ++ TL++ I AC  L + ++G+ +HA      L+ ++++GT+L+
Sbjct: 110 EALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLV 169

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           +M+ K   VD A  VF     K + +WN ++  ++ N    K++++F  M   GV P+ +
Sbjct: 170 NMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAV 229

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+ ++ AC  +    EG R  +  I    +  +      ++   G+ G L  A  + +S
Sbjct: 230 TFLTIIDACAALAAHTEG-RMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDS 288

Query: 589 MPMSPDVATWGALLGACKKHG 609
           +    +  TW A+L A  ++G
Sbjct: 289 LG-KKNTVTWSAILAAYAQNG 308



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 181/408 (44%), Gaps = 65/408 (15%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM-------SYSFKIFA 89
           L+KC   K   +   + + + L+ D +A+ RLI    +LL  IEM       + +  +F 
Sbjct: 31  LKKCADSKALLE--GKRVHSCLVKDGYASDRLI---ANLL--IEMYGKCGGIAEARSVFD 83

Query: 90  FLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
            ++  N  +  +N ++ AY Q  + ++A+ L+K M    V  +  T      A A   S 
Sbjct: 84  QIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSE 143

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
            EG+++H   +    +SD  V  +L+NM+  C ++ AAR +FD  P  +LV+WN+++A Y
Sbjct: 144 EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY 203

Query: 208 VNADNVEEAKFIY------------------------------NKMPERNIIAS------ 231
                 ++A  ++                               +M   +I AS      
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDV 263

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
               +++  +G+ G +  A  +F  + KK+ V+WSA+++ Y QN    EA+ L+  M+  
Sbjct: 264 ALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQG 323

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTS-----VHALAVKIGIECYINLQNALIHMYSSCG 343
            + V+ +  + +L AC++      G       +    V    E Y+N    LI +    G
Sbjct: 324 GLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLN----LIDLLGRSG 379

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           ++  +E L ++  +  D  +W +++      G V++   + + + E D
Sbjct: 380 QLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELD 427



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 6/209 (2%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           R + +T V ++  C    AL +GK +H+ + K+G   + ++   LI+MY K G +  A  
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 483 VFHGTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
           VF   +EK   V SWN +I  +  NGL  ++L +F  M   GV  N++T +  + AC  +
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
              +EG R  +++  + RLE ++     +V++ G+   +  A  + +S+P   ++ TW  
Sbjct: 141 PSEEEG-RIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLP-RKNLVTWNN 198

Query: 601 LLGACKKHGDHEMGERVGR--KLVELQPD 627
           ++    ++   +   +V R   L  +QPD
Sbjct: 199 MVAVYSQNWQCKKAIQVFRFMDLEGVQPD 227


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 344/580 (59%), Gaps = 9/580 (1%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           +++ + SN+++ ++G+ G + +A +LF EMP +D VSW+++++ + +  +    L +   
Sbjct: 35  DKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNT 94

Query: 285 MIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHMYS 340
           M  H  +  D  V   ++ AC++L  ++ G  VHA   +  +  + +   ++++LI MY+
Sbjct: 95  MFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA---RFMLSXFCDDEVVKSSLIDMYT 151

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG+   A  +FD+    + +SW SMISGY + G   +A  LF     +++ SW+ +ISG
Sbjct: 152 KCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISG 211

Query: 401 YAQHDQFSETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
             Q      + SLF EM+  GI   D   L SV+  C +L  L+ GK IH  +   G + 
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFES 271

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
              +   L+DMY K   +  A ++F+    K V SW ++I+G A +G A+++L ++ EM 
Sbjct: 272 CLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMV 331

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            S + PNE+TFVG+L AC H GLV  G   F SM  ++ + P+ +HY C++DLL R+G L
Sbjct: 332 LSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHL 391

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            EAE L++ +P  PD  TW +LL AC +H + EMG R+  ++++L+P+    ++LLSN++
Sbjct: 392 DEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVY 451

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT-HPQINEIDNMLDEM 698
           A    W  V +VR +M    V K PG S I+       F AG+   HP  NEI N+L ++
Sbjct: 452 AGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDL 511

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
             +++  GY P+T  V +DI+Q+EKE  LF HSE+LA+A+GL+   P   IRI+KNLRIC
Sbjct: 512 DAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRIC 571

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH   KFIS    REI+VRD  R+HHFK G CSC DFW
Sbjct: 572 GDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 26/263 (9%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA---SALR 144
           FL++P  N F +  ++   IQ      +  L+  M    + + +   PL+  +       
Sbjct: 194 FLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVD---PLVLSSVVGGCAN 250

Query: 145 LSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           L++ E GK IH  V+  GF+S ++++N L++MYA C D+ AA+ +F   P  D++SW SI
Sbjct: 251 LALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSI 310

Query: 204 LAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMP---- 255
           + G       EEA  +Y++M     + N +    ++      G V+    LF+ M     
Sbjct: 311 IVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYS 370

Query: 256 -KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAG 313
               L  ++ L+    ++   +EA     N++D      DE    S+LSAC     ++ G
Sbjct: 371 INPSLQHYTCLLDLLSRSGHLDEA----ENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 314 TSVHALAVKIGIE---CYINLQN 333
             +    + +  E    YI L N
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSN 449


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 344/580 (59%), Gaps = 9/580 (1%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           +++ + SN+++ ++G+ G + +A +LF EMP +D VSW+++++ + +  +    L +   
Sbjct: 35  DKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNT 94

Query: 285 MIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHMYS 340
           M  H  +  D  V   ++ AC++L  ++ G  VHA   +  +  + +   ++++LI MY+
Sbjct: 95  MFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA---RFMLSFFCDDEVVKSSLIDMYT 151

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG+   A  +FD+    + +SW SMISGY + G   +A  LF     +++ SW+ +ISG
Sbjct: 152 KCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISG 211

Query: 401 YAQHDQFSETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
             Q      + SLF EM+  GI   D   L SV+  C +L  L+ GK IH  +   G + 
Sbjct: 212 LIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFES 271

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
              +   L+DMY K   +  A ++F+    K V SW ++I+G A +G A+++L ++ EM 
Sbjct: 272 CLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMV 331

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            S + PNE+TFVG+L AC H GLV  G   F SM  ++ + P+ +HY C++DLL R+G L
Sbjct: 332 LSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHL 391

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            EAE L++ +P  PD  TW +LL AC +H + EMG R+  ++++L+P+    ++LLSN++
Sbjct: 392 DEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVY 451

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT-HPQINEIDNMLDEM 698
           A    W  V +VR +M    V K PG S I+       F AG+   HP  NEI N+L ++
Sbjct: 452 AGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDL 511

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
             +++  GY P+T  V +DI+Q+EKE  LF HSE+LA+A+GL+   P   IRI+KNLRIC
Sbjct: 512 DAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRIC 571

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH   KFIS    REI+VRD  R+HHFK G CSC DFW
Sbjct: 572 GDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 26/263 (9%)

Query: 90  FLESP--NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA---SALR 144
           FL++P  N F +  ++   IQ      +  L+  M    + + +   PL+  +       
Sbjct: 194 FLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVD---PLVLSSVVGGCAN 250

Query: 145 LSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           L++ E GK IH  V+  GF+S ++++N L++MYA C D+ AA+ +F   P  D++SW SI
Sbjct: 251 LALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSI 310

Query: 204 LAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMP---- 255
           + G       EEA  +Y++M     + N +    ++      G V+    LF+ M     
Sbjct: 311 IVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYS 370

Query: 256 -KKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAG 313
               L  ++ L+    ++   +EA     N++D      DE    S+LSAC     ++ G
Sbjct: 371 INPSLQHYTCLLDLLSRSGHLDEA----ENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 314 TSVHALAVKIGIE---CYINLQN 333
             +    + +  E    YI L N
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSN 449


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/756 (32%), Positives = 391/756 (51%), Gaps = 107/756 (14%)

Query: 150 GKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNSILAGY 207
           G+ +H  +L+    D D  V N+L+ +Y+ CG +++AR +FD    L D+VSW ++ +  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 208 VNADNVEEAKFIYNKMPER----------------------------------------- 226
                  E+  +  +M E                                          
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGT 186

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I   +++I +  R G++A A ++F  + +K +V W+ LIS Y Q E  EEA+ +F++ +
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG--- 343
           +     D   + S++SAC  L  V+ G  +H+LA+++G      +   L+ MY+      
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE-KARALFDAMIEKDV----VSWST-- 396
            +  A K+F+     D+ISW ++ISGY++ G  E K   LF  M+ + +    +++S+  
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 397 ---------------------------------MISGYAQHDQFSETLSLFMEM------ 417
                                            ++S YA+     E   +F ++      
Sbjct: 367 KACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 418 -----------QHHGIRPD----EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
                       H   R D     +T  S+ISA   +  L +G+ +HA   K G   +  
Sbjct: 427 SCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRF 486

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           +  +L+ MY + G +++A   F+  +++ V SW ++I G A +G A+++L +F +M  +G
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           V PN++T++ VL AC H+GLV EG  +F SM ++H L P  +HY CMVDLL R+G++KEA
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEA 606

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
            E I  MP+  D   W  LLGAC+ H + E+GE   + ++EL+P     +VLLSN++A  
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADA 666

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKL 702
           G WD+V  +R  M    + K  G S +E     HEF AGD +HP+  +I   LD +  ++
Sbjct: 667 GLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEI 726

Query: 703 KLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCH 762
           K  GY PDT  V  D+  E KE  L +HSEK+A+AFGLIT S P PIRI KNLR+C DCH
Sbjct: 727 KGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCH 786

Query: 763 TAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +A K++S+A  REI++RD +RFH  K G CSC ++W
Sbjct: 787 SAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/545 (39%), Positives = 320/545 (58%), Gaps = 31/545 (5%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M   D VSW++LI    +    E+AL  F  M    + +DE  + SVL++ A++ V++  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
            SVH L +K G E Y  + NALI MY+                               K 
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYA-------------------------------KQ 89

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G ++ A  +F  M++KDVVSW+++++GY+ +  + E + LF +M+  G+ PD+  + SV+
Sbjct: 90  GKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVL 149

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SAC  L  +D G+ IHA + K+GL+ +  +  +L+ MY K G + +A   F     + V 
Sbjct: 150 SACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVI 209

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SW ALI+G+A NG    SL+ + +M  +G  P+ ITF+G+L AC H GL+  G  +F +M
Sbjct: 210 SWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAM 269

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
            + + ++P  +HY CM+DLLGR+G L EA+ L+  M ++PD   W ALL AC+ H + E+
Sbjct: 270 DKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELEL 329

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE   + L EL+P +   +V+LSN++++ G+W+D   +R +M  RG+ K PG S IE N 
Sbjct: 330 GEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNS 389

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +  F++ DR HP  NEI + +DE+   +K  GY PD      D D E KE  L  HSEK
Sbjct: 390 KVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEK 449

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+AFGL+T+    PIRI KNLR+C DCHTA K+ S+ + R I++RD + FHHF  G CS
Sbjct: 450 LAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCS 509

Query: 794 CMDFW 798
           C D+W
Sbjct: 510 CGDYW 514



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 141/296 (47%), Gaps = 42/296 (14%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL-IHDHV 157
           +N+++   ++    + A+  ++ M + ++ +D YT P +  + A  + V +  + +H  +
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFA-SMKVMQNAISVHCLI 67

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           +K GF++   VNN LI+MYA  G L  A  +F +    D+VSW S++ GY +  + EEA 
Sbjct: 68  IKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAI 127

Query: 218 FIYNKM------PERNIIAS---------------------------------NSMIVLF 238
            ++ KM      P++  +AS                                 NS++ ++
Sbjct: 128 KLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMY 187

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            + G++ +A R F  MP +D++SW+ALI  Y QN   + +L  +  MI      D +  +
Sbjct: 188 AKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFI 247

Query: 299 SVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFD 353
            +L AC++  ++ +G +      K+ GI+        +I +    G++  A+ L +
Sbjct: 248 GLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLN 303



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 43/223 (19%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F+ +   +   + +++  Y      ++AI L+  M  + V  D      +  A A  L+
Sbjct: 98  VFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACA-ELT 156

Query: 147 VFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           V + G+ IH  ++K+G +S + V+N+L+ MYA CG +  A + FD  P  D++SW +++ 
Sbjct: 157 VMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIV 216

Query: 206 GYVNADNVEEAKFIYNKM------PE-------------RNIIASNS------------- 233
           GY      + +   Y++M      P+               ++ S               
Sbjct: 217 GYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIK 276

Query: 234 --------MIVLFGRKGNVAEACRLFKEM-PKKDLVSWSALIS 267
                   MI L GR G +AEA  L  +M    D V W AL++
Sbjct: 277 PGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLA 319


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 280/852 (32%), Positives = 448/852 (52%), Gaps = 82/852 (9%)

Query: 5   TKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFA 64
           T  +H ++T+ SS      F+  IN      +   C S ++  ++  Q I  G + + F 
Sbjct: 86  TSTSHCNTTLFSS---SETFESLIN-----RYQGSCCS-EEARELHLQSIKYGFVGNLFL 136

Query: 65  ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
           ++ LI      +   ++  + K+F  + + N   +  ++  Y Q   P +A   ++ M+ 
Sbjct: 137 SNTLINI---YVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVR 193

Query: 125 NNVGVDNYTYPLLAQASALRLSVFEG----KL---IHDHVLKAGFDSDVYVNNTLINMYA 177
                ++Y +      SALR     G    KL   IH  + K  + SDV V N LI+MY 
Sbjct: 194 AGFIPNHYAF-----GSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 248

Query: 178 VCGD-LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------------ 224
            C D  + AR +FD   + + +SWNSI++ Y    +   A  +++ M             
Sbjct: 249 SCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND 308

Query: 225 ----------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
                                       +  +   N ++ ++ + G +A+AC +F+ M +
Sbjct: 309 AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVE 368

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           KD VSW++LIS  +QNE  E+A  +F  M ++    D+V   SV+ A ++     +    
Sbjct: 369 KDSVSWNSLISGLDQNECSEDAAEMFSLMPEY----DQVSWNSVIGALSDSEASVSQAVK 424

Query: 317 HALAVKIG-----IECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--DLISWNSMISG 369
           + L +  G        +IN+ +A+  +  S  E++         + L  D    N+++S 
Sbjct: 425 YFLQMMRGGWGLSRVTFINILSAVSSL--SLHEVSHQIHALVLKYCLSDDTAIGNALLSC 482

Query: 370 YLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
           Y KCG + +   +F  M E +D VSW++MISGY  ++   + + L   M   G R D  T
Sbjct: 483 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFT 542

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             +++SAC  +  L++G  +HA   +  L+ + ++G+ L+DMY K G +D A   F    
Sbjct: 543 FATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMP 602

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V SWN++I G+A +G  +K+L++F+ M   G  P+ +TFVGVL AC H+G V+EG  
Sbjct: 603 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE 662

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA-CKK 607
           HF SM + +RL P  +H+ CMVDLLGRAG L E  + I SMPM P+V  W  +LGA C+ 
Sbjct: 663 HFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRA 722

Query: 608 HG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
           +G + E+G R    L+EL+P +   +VLL+N++AS  +W+DV + R  M    V K  GC
Sbjct: 723 NGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGC 782

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S +     +H F+AGD+ HP+ + I + L E+ +K++  GY P T    FD++ E KE  
Sbjct: 783 SWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEEL 842

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEK+A+AF ++T     PIRIMKNLR+C DCH+A  +IS+   R+IV+RD +RFHH
Sbjct: 843 LSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHH 901

Query: 787 FKHGSCSCMDFW 798
           F+ G CSC D+W
Sbjct: 902 FEDGKCSCGDYW 913


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/669 (34%), Positives = 366/669 (54%), Gaps = 67/669 (10%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TY  L Q  +   ++ EGK +H+H+  +GF                              
Sbjct: 89  TYCNLIQVCSQTRALEEGKKVHEHIRTSGF------------------------------ 118

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFK 252
            V  +V WN IL  Y    ++ +A+ ++++MPER++ + N M+  +   G + EA  LF 
Sbjct: 119 -VPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFD 177

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           EMP++D  SW+A+++ Y + +  EEALVL+  M   RV   +  + +V SA A    +K 
Sbjct: 178 EMPERDSYSWTAMVTGYVKKDQPEEALVLYSLM--QRVPNSKPNIFTVSSAVAAAAAIKC 235

Query: 313 ---GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +H   V+ G++                                D + W+S++  
Sbjct: 236 IRRGKEIHGHIVRAGLDS-------------------------------DEVLWSSLMDM 264

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y KCG +++AR +FD +I+KDVVSW++MI  Y +  ++ E  SLF E+     RP+E T 
Sbjct: 265 YGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTF 324

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
             V++AC  L   + G+ +H Y+ + G    S   ++LIDMY K G +++A  V  G  +
Sbjct: 325 SGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPK 384

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH 549
             + S  +LI G+A NG  D++L+ F  + KSG  P+ +TFV VL AC H GLV++G   
Sbjct: 385 PDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEF 444

Query: 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           F S+ ++H L   S HY C+VDLL R+G  ++ + ++  MPM P    W ++LG C  +G
Sbjct: 445 FYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYG 504

Query: 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           + ++ E   ++L +++P++   +V ++NI+A+ G+W++  ++R  M   G+ K PG S  
Sbjct: 505 NIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWT 564

Query: 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFR 729
           E     H F+A D +HP  N+I   L E+ KK+K EGY P T  V  D++ E+KE  L  
Sbjct: 565 EIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVY 624

Query: 730 HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKH 789
           HSEKLA+AF +++      I++ KNLR C DCH+A KFIS+   R+I +RD  RFH F++
Sbjct: 625 HSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFEN 684

Query: 790 GSCSCMDFW 798
           G CSC D+W
Sbjct: 685 GQCSCRDYW 693



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 172/382 (45%), Gaps = 47/382 (12%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQASALRL 145
           +F  +   + + +  M+  Y++++ P++A+ LY LM    N   + +T      A+A   
Sbjct: 175 LFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIK 234

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +  GK IH H+++AG DSD  + ++L++MY  CG +  AR +FD+    D+VSW S++ 
Sbjct: 235 CIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMID 294

Query: 206 GYVNADNVEEAKFIYNKM------PE--------------------RNI----------- 228
            Y  +    E   +++++      P                     R +           
Sbjct: 295 RYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDP 354

Query: 229 --IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
              AS+S+I ++ + GN+  A  +    PK DLVS ++LI  Y QN   +EAL  F  ++
Sbjct: 355 YSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLL 414

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEI 345
                 D V  V+VLSAC +  +V+ G    +++  K  +    +    L+ + +  G  
Sbjct: 415 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRF 474

Query: 346 TTAEK-LFDAGHNLDLISWNSMISGYLKCGSV----EKARALFDAMIEKDVVSWSTMISG 400
              +  L +         W S++ G    G++    E A+ LF    E + V++ TM + 
Sbjct: 475 EQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPVTYVTMANI 533

Query: 401 YAQHDQFSETLSLFMEMQHHGI 422
           YA   ++ E   +   MQ  GI
Sbjct: 534 YAAAGKWEEEGKMRKRMQEIGI 555


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 396/742 (53%), Gaps = 43/742 (5%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F+ +   +   ++TM+  Y       +A+ L+  M+      ++ T     QA A+  +
Sbjct: 228 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 287

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG----DLSAARKLFDESPVLDLVSWNS 202
           + EGK IH    K     DV     L++ YA  G     +   R +  +    D V+   
Sbjct: 288 LEEGKKIH----KIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVK 343

Query: 203 ILAGYVNADNVEEA----KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           ILA        ++A     ++       N+    S+I L+ + G++ +A +LFK M  +D
Sbjct: 344 ILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD 403

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV---VKAGTS 315
           +V WS++I+ Y  +    EAL +F  MI          V+  +++C  +++   V+   +
Sbjct: 404 VVIWSSMIAAYGIHGRGGEALEIFDQMIQ---------VMQGITSCYQISMQPQVQPPLA 454

Query: 316 VHALAVKIGIECYINLQNALIHM------------YSSCGEITTAEKLFDAGHNLDLISW 363
           + +  +   I   +       H             Y       +   +F  G   D    
Sbjct: 455 ITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRIL 514

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
                 Y+    ++ A  +F+ +       W+ MI G+A   +F  +L L+ +M   G++
Sbjct: 515 TKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLK 574

Query: 424 PDEA-------TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           PD +       +++SV+ AC +L AL +G+W H+Y+ + G + + ++ T ++DMY K G 
Sbjct: 575 PDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 634

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           +D A  +F  T  K +  W+A+I  + ++G   K++++F +M K+GV P+ +TF  VL A
Sbjct: 635 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 694

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C H GL++EG  +F  M +E  +     +Y CMVDLLGRAG L EA +LIE+MP+ PD +
Sbjct: 695 CSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDAS 754

Query: 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656
            WG+LLGAC+ H + ++ E++   L  L P H G+HVLLSNI+A+K RW++V +VR MM 
Sbjct: 755 IWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMA 814

Query: 657 RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF 716
           RRG  KI G S++E +  +H+F  GDR+HPQ  ++   L+E+A  +K  GY P T  V  
Sbjct: 815 RRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLH 874

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           DI++E KE  L  HSE+LAIAFGLI  SP   +RI KNLRIC DCH A K IS+  +R I
Sbjct: 875 DIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVI 934

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           +VRD HRFH F+ G CSC D+W
Sbjct: 935 LVRDMHRFHRFEDGVCSCGDYW 956



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 189/700 (27%), Positives = 321/700 (45%), Gaps = 107/700 (15%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           +L    Q C + +  +Q+ SQ+  TG++ DTF A++L            +  + K+F   
Sbjct: 6   VLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKC---ASLQAARKVFDET 62

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEG 150
             PN  ++N+ +R+Y +    ++ + L+ LM+       DN+T P+  +A A    +  G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 151 KLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           K+IH    K     SD++V + L+ +Y+ CG +  A K+F+E    D V W S++ GY  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 210 ADNVEEAKFIYNKMP-----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
            ++ EEA  ++++M      + ++   NS++ L+ + G    A  LF +MP+KD++SWS 
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I+CY  NE   EAL LF  MI+ R   + V VVS L ACA    ++ G  +H +AV   
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302

Query: 325 IECYINL-----QN-----------------------ALIHMYSSCGEITTAEK------ 350
           +  ++ L     QN                       A++ + ++  E+   ++      
Sbjct: 303 VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHG 362

Query: 351 -LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +  +G N ++    S+I  Y KCGS+  A  LF  MI +DVV WS+MI+ Y  H +  E
Sbjct: 363 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 422

Query: 410 TLSLFMEMQH--HGI--------RPDEATLVSVISA--CTHLVALDQGKWIHAYIR---- 453
            L +F +M     GI        +P     +++ S    TH+    +  ++ A+ R    
Sbjct: 423 ALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGH 482

Query: 454 ---------------------KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
                                  GL+ +S + T    MY+    +D A  VF        
Sbjct: 483 FWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCS 542

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKK-------SGVTPNEITFVGVLGACRHMGLVDE 545
             WN +I GFA +G    SLE++S+M +       SGV PN ++ + VL AC ++G + +
Sbjct: 543 FLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRK 602

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G   F+S + +   E +      ++D+  + G L  A  L +      D+  W A++ + 
Sbjct: 603 G-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA-GKDLVCWSAMIASY 660

Query: 606 KKHGDHEMGERVGRKLVEL---------QPDHDGFHVLLS 636
             HG        GRK ++L         +P H  F  +LS
Sbjct: 661 GIHGH-------GRKAIDLFDQMVKAGVRPSHVTFTCVLS 693



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 120/281 (42%), Gaps = 62/281 (22%)

Query: 68  LIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127
           L KF+   + F  +  +  +F  + +P  F++N M+R +        ++ LY  M+   +
Sbjct: 514 LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGL 573

Query: 128 GVDNY-TYP--------LLA--QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMY 176
             DN    P        LLA     ALR    +G+  H +V++ GF+ D+ V   +++MY
Sbjct: 574 KPDNSGVIPNRVSILSVLLACGNLGALR----KGEWFHSYVIQTGFEFDILVATAIMDMY 629

Query: 177 AVCGDLSAARKLFDESPVLDLVSWNSILAGY--------------------VNADNV--- 213
           + CG L  AR LFDE+   DLV W++++A Y                    V   +V   
Sbjct: 630 SKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFT 689

Query: 214 ------------EEAKFIYNKMPERNIIASN-----SMIVLFGRKGNVAEACRLFKEMP- 255
                       EE K  +  M E  +IA        M+ L GR G ++EA  L + MP 
Sbjct: 690 CVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV 749

Query: 256 KKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
           + D   W +L+ +C   N      L L   + DH   +D V
Sbjct: 750 EPDASIWGSLLGACRIHNN-----LDLAEKIADHLFHLDPV 785


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 351/619 (56%), Gaps = 37/619 (5%)

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A+ I + +   ++I +  +I     + ++  +  +F     K+L +++ALI     N  +
Sbjct: 102 AQIIIHNLSSSSLITTQ-LISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHF 160

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-------- 327
             A+  F  M+   +  D +    VL + A L   + G ++H + ++ GIE         
Sbjct: 161 FNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSL 220

Query: 328 ---YINLQ-------------------------NALIHMYSSCGEITTAEKLFDAGHNLD 359
              Y+ ++                         N LI      G +  A KLF A    +
Sbjct: 221 VDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKE 280

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
            +SW+++I G+ K G +++A  LFD M EK+VVSW+TM+ G++++    + LS+F +M  
Sbjct: 281 NVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLE 340

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+RP+  T+VS +SAC  +  L+ G  IH YI+ NGL +   LGT L+DMY K G +++
Sbjct: 341 EGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIES 400

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A EVF  TE+K + +W  +I G+A++G +++++  F +M  +G+ P+E+ F+ +L AC H
Sbjct: 401 ASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMH 460

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            G VD G   F+SM  ++ +EP+ KHY  +VD+LGR+G LKEA   IE MPM+PD   WG
Sbjct: 461 SGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWG 520

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           AL  AC+ H   +M +    KL++L+P H G ++ LSN +A+ G+W+D   VR +M  RG
Sbjct: 521 ALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRG 580

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           V K  G S IE  G +H F++GD  H     I   L+E+      +GY P T  V  +++
Sbjct: 581 VHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNME 640

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           QEEKE  L  H EKLA+AF LI  SP   IRI+KNL++C DCH+  K+ S+   REI++R
Sbjct: 641 QEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLR 700

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK GSCSC D W
Sbjct: 701 DMKRFHHFKDGSCSCRDHW 719



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 230/474 (48%), Gaps = 40/474 (8%)

Query: 15  KSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD 74
           KSS++A  I   T   +   + +   ++  Q  QI +Q+I+  L + +   ++LI  S+ 
Sbjct: 66  KSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLIS-SSS 124

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY 134
           L   I  ++S  +F   +  N F FN ++R     +    AI  ++LML + +  D  TY
Sbjct: 125 LRKSI--NHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTY 182

Query: 135 PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP- 193
           P + ++ A   S   G  IH  +L+ G + D +V  +L++MY     L +A K+FDESP 
Sbjct: 183 PFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPE 242

Query: 194 VLDLVS----WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
             D  S    WN ++ G   A ++++A  ++  MP++  ++ +++I  F + G++  A  
Sbjct: 243 RFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAME 302

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           LF +MP+K++VSW+ ++  + +N   E+AL +F  M++  V  +   +VS LSACA +  
Sbjct: 303 LFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGG 362

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++AG  +H      G+     L  AL+ MY+ CG I +A ++F       + +W  MI G
Sbjct: 363 LEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWG 422

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                          +A H    + ++ F +M   GI+PDE   
Sbjct: 423 -------------------------------WAIHGHSEQAIACFKQMMFAGIKPDEVVF 451

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI-DMYMKLGCVDNALE 482
           +++++AC H   +D G      +R +     S+   TLI DM  + G +  AL 
Sbjct: 452 LALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALR 505


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/524 (41%), Positives = 312/524 (59%), Gaps = 30/524 (5%)

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQNA 334
             A   F  M+   V  ++     +L +CA L      G   HA A+K G      + N 
Sbjct: 117 RRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNT 176

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           LIHMYS  G                        +G+L       AR +F+ M  +  V+W
Sbjct: 177 LIHMYSCFG------------------------AGFLG-----DARNVFERMPRESAVTW 207

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           S MI GY +    S+ + LF  MQ  G+RPDE T++ V++A   L AL+  +W+  ++ +
Sbjct: 208 SAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVER 267

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
            G+  +  L   LID   K G VD A+ VF G EE+ V SW ++I   AM G   +++ +
Sbjct: 268 EGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGV 327

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F EMK  GV P+++ F+GVL AC H G+VDEG  +F+SM  E+ +EP  +HYGCMVD+ G
Sbjct: 328 FEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFG 387

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAGM+++  E + +MPM P+   W  L+ AC+ HG  E+GE + R L+   P H+  +V+
Sbjct: 388 RAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVM 447

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSN++A   RW +  E+R  M +RG+ K+PGCS++E +G +HEF+AGD +HPQ  EI  M
Sbjct: 448 LSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRM 507

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           ++EM+++L+  G+   T EV  D+D+E+KE  L  HSEKLAIAF L+   P   +R++KN
Sbjct: 508 VEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKN 567

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           LR+C+DCH A K IS+ ++REIVVRDR RFH FK GSCSC DFW
Sbjct: 568 LRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 56/382 (14%)

Query: 95  NGFIFNTMMRAYIQRNVP---QQAICLYKLMLNNNVGVDNYTYP-LLAQASALRLSVFEG 150
           + F+ NT++R ++    P   ++A   + LML   V  + +T+P LL   +AL  S   G
Sbjct: 96  DAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVG 155

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAV--CGDLSAARKLFDESPVLDLVSWNSILAGYV 208
              H   LK GF +D YV+NTLI+MY+    G L  AR +F+  P    V+W++++ GYV
Sbjct: 156 LQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYV 215

Query: 209 NADNVEEAKFIYNKM------PE---------------------------------RNII 229
            A    +A  ++  M      P+                                 +++ 
Sbjct: 216 RAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVT 275

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
             N++I    + G+V  A  +F+ M ++ +VSW+++I         +EA+ +F  M    
Sbjct: 276 LCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVG 335

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           V+ D+V  + VL+AC++  +V  G     ++  + GIE  I     ++ M+   G +   
Sbjct: 336 VLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQG 395

Query: 349 EKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMI------EKDVVSWSTMISGY 401
            +   A     + I W ++++     G +E   ++   ++      E + V  S +   Y
Sbjct: 396 LEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNV---Y 452

Query: 402 AQHDQFSETLSLFMEMQHHGIR 423
           A   ++ E   +  EM   GI+
Sbjct: 453 ALTQRWKEKSEIRREMSKRGIK 474



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 66/328 (20%)

Query: 231 SNSMIVLFG--RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           SN++I ++     G + +A  +F+ MP++  V+WSA+I  Y +  +  +A+VLF  M   
Sbjct: 174 SNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVS 233

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            V  DEV V+ VL+A A+L  ++    V     + GI   + L NALI   + CG++  A
Sbjct: 234 GVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGA 293

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
             +F+      ++SW S+I                DA+               A   +  
Sbjct: 294 VAVFEGMEERTVVSWTSVI----------------DAL---------------AMEGRGK 322

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
           E + +F EM+  G+ PD+   + V++AC+H   +D+G+    Y                 
Sbjct: 323 EAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGR---GYF---------------- 363

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
                     ++++  +G E K +  +  ++  F   G+ ++ LE    M    + PN I
Sbjct: 364 ----------DSMKTEYGIEPK-IEHYGCMVDMFGRAGMVEQGLEFVRAMP---MKPNPI 409

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE 556
            +  ++ ACR  G ++ G     +++ E
Sbjct: 410 IWRTLVAACRAHGRLELGESITRNLLNE 437


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/831 (32%), Positives = 436/831 (52%), Gaps = 85/831 (10%)

Query: 16   SSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL 75
            + +N +P      +L  +   L  C       Q+L+++  +  + D +  S L+   +  
Sbjct: 240  TELNCRPNEYTFCSLVTVACSLVDC-GLTLLEQMLARIEKSSFVKDLYVGSALV---SGF 295

Query: 76   LPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135
              +  +  +  IF  ++  N    N +M    +++  ++A  ++K M  + V ++  +Y 
Sbjct: 296  ARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYA 354

Query: 136  LLAQA----SALRLSVFEGKLIHDHVLK-AGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
            +L  A    S L+    +G+ +H ++++ A  D  + + N L+N+YA C  +  AR +F 
Sbjct: 355  VLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQ 414

Query: 191  ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII--------------------- 229
              P  D VSWNSI++G  + +  EEA   ++ M    ++                     
Sbjct: 415  LMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIML 474

Query: 230  ------------------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                               SN+++ L+     + E  ++F  MP+ D VSW++ I     
Sbjct: 475  GQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALAT 534

Query: 272  NEM-YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            +E    +A+  F+ M+      + V  +++LSA ++L++++ G  +HAL +K  +     
Sbjct: 535  SEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNA 594

Query: 331  LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK- 389
            ++N L+  Y                                KC  +E    +F  M E+ 
Sbjct: 595  IENTLLAFYG-------------------------------KCEQMEDCEIIFSRMSERR 623

Query: 390  DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
            D VSW+ MISGY  +    + + L   M   G R D+ TL +V+SAC  +  L++G  +H
Sbjct: 624  DEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVH 683

Query: 450  AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
            A   +  L+   ++G+ L+DMY K G +D A   F     + + SWN++I G+A +G   
Sbjct: 684  ACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGG 743

Query: 510  KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
            K+L++F++MK+ G  P+ +TFVGVL AC H+GLVDEG  HF SM + + L P  +H+ CM
Sbjct: 744  KALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCM 803

Query: 570  VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH--EMGERVGRKLVELQPD 627
            VDLLGRAG +K+ EE I++MPM+P+   W  +LGAC +      E+G R  + L+EL+P 
Sbjct: 804  VDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPL 863

Query: 628  HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ 687
            +   +VLLSN+HA+ G+W+DV E R  M    V K  GCS +     +H F+AGD+THP+
Sbjct: 864  NAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPE 923

Query: 688  INEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN 747
              +I + L E+  K++  GY P+T    +D++ E KE  L  HSEKLAIAF ++T     
Sbjct: 924  KEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRQSEL 982

Query: 748  PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            PIRI+KNLR+C DCHTA K+IS   +R+I++RD +RFHHF  G CSC D+W
Sbjct: 983  PIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 233/491 (47%), Gaps = 45/491 (9%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +V +   +H  + K G  SDV+  NTL+N++   G+L +A+KLFDE P  +LVSW+ +++
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           GY      +EA  ++  +    ++ ++  I      G+   AC+       K  +    L
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAI------GSALRACQELGPNMLKLGMEIHGL 167

Query: 266 ISCYEQNEMYEEALVL---FMNMIDH--------RVMVDEVVVVSVLSACANLTV-VKAG 313
           IS       Y   +VL    M+M  H        R + +E+ + +  S  + ++V  + G
Sbjct: 168 IS----KSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRG 223

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--------------- 358
            ++ A  +   ++      N   + Y+ C  +T A  L D G  L               
Sbjct: 224 DAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVK 283

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           DL   ++++SG+ + G ++ A+ +F+ M +++ V+ + ++ G A+  Q  E   +F EM+
Sbjct: 284 DLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK 343

Query: 419 HHGIRPDEATLVSVISACTHLVALDQGKW----IHAYIRKNGL-KINSILGTTLIDMYMK 473
              +  + ++   ++SA T    L +GK     +HAY+ +N L  +  ++G  L+++Y K
Sbjct: 344 DL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAK 402

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
              +DNA  +F     K   SWN++I G   N   ++++  F  M+++G+ P++ + +  
Sbjct: 403 CNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVIST 462

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L +C  +G +  G +     I+   L+ +      ++ L      ++E +++   MP   
Sbjct: 463 LSSCASLGWIMLGQQIHGEGIK-CGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP-EY 520

Query: 594 DVATWGALLGA 604
           D  +W + +GA
Sbjct: 521 DQVSWNSFIGA 531



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 133/616 (21%), Positives = 270/616 (43%), Gaps = 100/616 (16%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+  Q+  TGL +D F  + L+         +      K+F  +   N   ++ ++  Y 
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQ---KLFDEMPQKNLVSWSCLVSGYA 116

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS-------VFEGKLIHDHVLKA 160
           Q  +P +A  L++ +++  +  ++Y     A  SALR         +  G  IH  + K+
Sbjct: 117 QNGMPDEACMLFRGIISAGLLPNHY-----AIGSALRACQELGPNMLKLGMEIHGLISKS 171

Query: 161 GFDSDVYVNNTLINMYAVC-GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
            + SD+ ++N L++MY+ C   +  AR++F+E  +    SWNSI++ Y    +   A  +
Sbjct: 172 PYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKL 231

Query: 220 YNKMPE---------------------------------------------RNIIASNSM 234
           ++ M                                               +++   +++
Sbjct: 232 FSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSAL 291

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           +  F R G +  A  +F++M  ++ V+ + L+    +    EEA  +F  M D  V ++ 
Sbjct: 292 VSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKD-LVEINA 350

Query: 295 VVVVSVLSACANLTVVK----AGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAE 349
                +LSA    + +K     G  VHA  ++   ++ +I + NAL+++Y+ C  I  A 
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +F    + D +SWNS+                               ISG   +++F E
Sbjct: 411 SIFQLMPSKDTVSWNSI-------------------------------ISGLDHNERFEE 439

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            ++ F  M+ +G+ P + +++S +S+C  L  +  G+ IH    K GL ++  +   L+ 
Sbjct: 440 AVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLT 499

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD-KSLEMFSEMKKSGVTPNEI 528
           +Y +  C++   +VF    E    SWN+ I   A +  +  ++++ F EM ++G  PN +
Sbjct: 500 LYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRV 559

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TF+ +L A   + L++ G R  +++I +H +  ++     ++   G+   +++ E +   
Sbjct: 560 TFINILSAVSSLSLLELG-RQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSR 618

Query: 589 MPMSPDVATWGALLGA 604
           M    D  +W A++  
Sbjct: 619 MSERRDEVSWNAMISG 634


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/739 (34%), Positives = 384/739 (51%), Gaps = 111/739 (15%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSVFEGKLIHDHVLKA 160
           ++  Y +     +A  L+K M         YT   +L   SAL L + +G++IH +V+K 
Sbjct: 183 LISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGL-IQKGEMIHGYVVKN 241

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGYV-NADN----- 212
           GF+S+VYV   L++MYA C  +S A  LF        + V W +++ GY  N D+     
Sbjct: 242 GFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIE 301

Query: 213 ---------VEEAKFIYNKMPE-------------------RNIIASNS-----MIVLFG 239
                    VE  +F +  +                     RN    N+     ++ ++ 
Sbjct: 302 FFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYA 361

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++  A R+ + M   D+VSW+++I    ++   EEA++LF  M    + +D     S
Sbjct: 362 KCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPS 421

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL+ C    +   G SVH L +K G E Y  + NAL+ MY+   +               
Sbjct: 422 VLNCCIVGRI--DGKSVHCLVIKTGFENYKLVSNALVDMYAKTED--------------- 464

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                      L C     A A+F+ M EKDV+SW+++++GY Q+    E+L  F +M+ 
Sbjct: 465 -----------LNC-----AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRI 508

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G+ PD+  + S++SAC  L  L+ GK +H+   K GL+ +  +  +L+ MY K GC+D+
Sbjct: 509 SGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDD 568

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A  +F     + V +W ALI+G+A NG    SL+ F +MKK            + G    
Sbjct: 569 ADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKK------------IYG---- 612

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
                              +EP  +HY CM+DL GR G L EA+E++  M + PD   W 
Sbjct: 613 -------------------IEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWK 653

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC+ HG+ E+GER    L EL+P +   +V+LSN++ +  +WDD  ++R +M  +G
Sbjct: 654 ALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKG 713

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K PGCS IE N  +H F++ DR HP+  EI + +DE+ +++K  GY PD      D+D
Sbjct: 714 ITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMD 773

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +E KE  L  HSEKLA+AFGL+   P  PIRI KNLR+C DCH+A K+IS  F R I++R
Sbjct: 774 REGKEAGLAYHSEKLAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILR 833

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D + FHHFK G CSC D+W
Sbjct: 834 DSNCFHHFKEGECSCEDYW 852



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 134/540 (24%), Positives = 245/540 (45%), Gaps = 90/540 (16%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D Y  NT+++ YA  G L  AR+LF+       ++W+S+++GY       EA  ++ +M 
Sbjct: 145 DEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMR 204

Query: 225 ---------------------------------------ERNIIASNSMIVLFGRKGNVA 245
                                                  E N+     ++ ++ +  +++
Sbjct: 205 LEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHIS 264

Query: 246 EACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           EA  LFK +   K + V W+A+++ Y QN    +A+  F  M    V  ++    S+L+A
Sbjct: 265 EAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTA 324

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C++++    G  VH   V+ G  C   +Q+AL+ MY+ CG++ +A+++ +   + D++SW
Sbjct: 325 CSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSW 384

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           NSMI G ++ G  E                               E + LF +M    ++
Sbjct: 385 NSMIVGCVRHGFEE-------------------------------EAILLFKKMHARNMK 413

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
            D  T  SV++ C  +V    GK +H  + K G +   ++   L+DMY K   ++ A  V
Sbjct: 414 IDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAV 471

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F    EK V SW +L+ G+  NG  ++SL+ F +M+ SGV+P++     +L AC  + L+
Sbjct: 472 FEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLL 531

Query: 544 DEG---HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           + G   H  F  +     L  N+     +V +  + G L +A+ +  SM +  DV TW A
Sbjct: 532 EFGKQVHSDFIKLGLRSSLSVNNS----LVTMYAKCGCLDDADAIFVSMHVR-DVITWTA 586

Query: 601 LLGACKKHGDHEMGERVGRKL-----VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655
           L+    ++G      +  +++     +E  P+H   +  + ++    G+ D+  E+   M
Sbjct: 587 LIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEH---YACMIDLFGRLGKLDEAKEILNQM 643



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 8/343 (2%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINL--QNALIHMYSSCGEITTAEKLFDAGHN 357
           +LSA  +L      T V  + +    + Y ++   N L++  S  G+I  A +LFD    
Sbjct: 84  LLSASPSLNEDSDDTGVQQVVMHNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQ 143

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            D  +WN+M+SGY   G + +AR LF+    +  ++WS++ISGY +  + +E   LF  M
Sbjct: 144 RDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRM 203

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
           +  G +P + TL S++  C+ L  + +G+ IH Y+ KNG + N  +   L+DMY K   +
Sbjct: 204 RLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHI 263

Query: 478 DNALEVFHGTE-EKGVSS-WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
             A  +F G    KG    W A++ G+A NG   K++E F  M   GV  N+ TF  +L 
Sbjct: 264 SEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILT 323

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC  +     G +  +  I  +    N+     +VD+  + G L  A+ ++E+M    DV
Sbjct: 324 ACSSVSAHCFGEQ-VHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENME-DDDV 381

Query: 596 ATWGALLGACKKHGDHEMGERVGRKL--VELQPDHDGFHVLLS 636
            +W +++  C +HG  E    + +K+    ++ DH  F  +L+
Sbjct: 382 VSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLN 424



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 194/417 (46%), Gaps = 43/417 (10%)

Query: 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
           N +L G   +  +++A+ +++KM +R+    N+M+  +   G + EA  LF     +  +
Sbjct: 119 NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSI 178

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +WS+LIS Y +     EA  LF  M        +  + S+L  C+ L +++ G  +H   
Sbjct: 179 TWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYV 238

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFD--AGHNLDLISWNSMISGYLKCGSVEK 378
           VK G E  + +   L+ MY+ C  I+ AE LF   A +  + + W +M++GY + G   K
Sbjct: 239 VKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHK 298

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A                               +  F  M   G+  ++ T  S+++AC+ 
Sbjct: 299 A-------------------------------IEFFRYMHTEGVESNQFTFPSILTACSS 327

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           + A   G+ +H  I +NG   N+ + + L+DMY K G + +A  V    E+  V SWN++
Sbjct: 328 VSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSM 387

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRH---FNSMIQ 555
           I+G   +G  ++++ +F +M    +  +  TF  VL  C  +G +D    H     +  +
Sbjct: 388 IVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCI-VGRIDGKSVHCLVIKTGFE 446

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            ++L  N+     +VD+  +   L  A  + E M    DV +W +L+    ++G HE
Sbjct: 447 NYKLVSNA-----LVDMYAKTEDLNCAYAVFEKM-FEKDVISWTSLVTGYTQNGSHE 497



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +++ ++ +F  +   +   + +++  Y Q    ++++  +  M  + V  D +    +  
Sbjct: 464 DLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILS 523

Query: 140 ASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           A A  L++ E GK +H   +K G  S + VNN+L+ MYA CG L  A  +F    V D++
Sbjct: 524 ACA-ELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVI 582

Query: 199 SWNSILAGYVNADN-------VEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251
           +W +++ GY             ++ K IY   P     A   MI LFGR G + EA  + 
Sbjct: 583 TWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYA--CMIDLFGRLGKLDEAKEIL 640

Query: 252 KEMP-KKDLVSWSALIS 267
            +M  K D   W AL++
Sbjct: 641 NQMDVKPDATVWKALLA 657


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/785 (32%), Positives = 404/785 (51%), Gaps = 77/785 (9%)

Query: 57  GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAI 116
           GLI D F  + +I          E   + ++F  +   N   +N+++R + +     +A 
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDE---AVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296

Query: 117 CLYKLMLNNNVGV--DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174
             ++ +L +  G+  D  T   L    +   +V  G +IH   +K G   ++ V N LI+
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALID 356

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM----------- 223
           MY+ CG LS A  LF +     +VSWNS++  Y     V E   +  KM           
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 224 -----------PERNIIA-------------------SNSMIVLFGRKGNVAEACRLFKE 253
                       E  +++                   +N+ I  + + G++  A  +F  
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFG 476

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M  K + SW+A+I  + QN    +AL  +  M    ++ D+  +VS+L AC  L +++ G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +H   ++ G+E      N+ + +                          S++S Y  C
Sbjct: 537 KEIHGFVLRNGLE-----MNSFVAV--------------------------SLLSLYFHC 565

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
                 R  F+ M +K+ V W+ M+SGY+Q++  +E LSLF +M   G+ PDE  + S++
Sbjct: 566 SKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASIL 625

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
            AC+ L AL  GK +H +  KN L  ++ +  +L+DMY K G + ++  +F+    K V+
Sbjct: 626 GACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVA 685

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           SWN +I GF ++G  +K++E+F +MK+S   P+  TF+GVL AC H GLV EG  +   M
Sbjct: 686 SWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQM 745

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
              ++LEP  +HY C++D+LGRAG L EA   I  MP  PD   W +LL +   + D EM
Sbjct: 746 QTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEM 805

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE+   KL+ L+ +    ++LLSN++A+ G+WD V  VR  M    + K  GCS IE  G
Sbjct: 806 GEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRG 865

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            ++ F+AG+ ++P  +EI  M + + K++   GY PD   V  ++++ EK   L  HSEK
Sbjct: 866 KVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEK 925

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           +AI FG +       +RI KNLRIC DCH AAK+IS+A  REIV+RD  RFHHFK G CS
Sbjct: 926 VAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICS 985

Query: 794 CMDFW 798
           C D+W
Sbjct: 986 CGDYW 990



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 165/664 (24%), Positives = 295/664 (44%), Gaps = 105/664 (15%)

Query: 37  LQKCQSFK--QFTQILSQMIL--TGLIADTFAASRLIK-FSTDLLPFIEMSYSFKIFAFL 91
           LQKC  +K  +  + L +M+   +    D    +RLI  +S    P      S  +F  L
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPL----ESRLVFDRL 169

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
            + N F +N ++  Y++  +  +AI    +L+       DN+T+P L +A   +  +  G
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG 229

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H   +K G   D++V N +I +Y  CG L  A +LFD+ P  +L+SWNS++ G+   
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSEN 289

Query: 211 DNVEEAKFIYNKMPERN-----------------------------------------II 229
               EA   +  + E                                           ++
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDH 288
             N++I ++ + G ++EA  LF+++  K +VSW+++I  Y +     E   L   M ++ 
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE 409

Query: 289 RVM-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            +M V+EV ++++L AC   + + +  ++H  +++   +    + NA I  Y+ CG +  
Sbjct: 410 ELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVF 469

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           AE +F   +   + SWN++I G+ + G   KA                            
Sbjct: 470 AEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKA---------------------------- 501

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              L  + EM   GI PD+ ++VS++ AC  L  L  GK IH ++ +NGL++NS +  +L
Sbjct: 502 ---LDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + +Y            F    +K    WNA++ G++ N L +++L +F +M   G+ P+E
Sbjct: 559 LSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEAEELI 586
           I    +LGAC  +  +  G       ++   +E N     C ++D+  ++G L  ++ + 
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDN--FVACSLMDMYAKSGFLGHSQRIF 676

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL---------QPDHDGF-HVLLS 636
             +    +VA+W  ++     HG        G K VEL         QPD   F  VL +
Sbjct: 677 NRLN-GKEVASWNVMITGFGVHGQ-------GNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 637 NIHA 640
             HA
Sbjct: 729 CCHA 732


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/685 (34%), Positives = 373/685 (54%), Gaps = 71/685 (10%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH+ ++ +G   + ++   L+N  +  G +  ARKLFDE    D+  WN+I+  Y   + 
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 213 VEEAKFIYNKM------PE---------------------------------RNIIASNS 233
             +   +Y  M      P+                                  ++   N 
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ + G++  A  +F  +  + +VSW+++IS Y QN    EAL +F  M ++ V  D
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + +VS+L A  ++  ++ G S+H   +K+G+E     + AL+                 
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFVIKMGLE----DEPALL----------------- 293

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                      S+ + Y KCG V  A++ FD M   +V+ W+ MISGYA++    E ++L
Sbjct: 294 ----------ISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNL 343

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  M    I+PD  T+ S + A   + +L+  +W+  Y+ K+    +  + T+LIDMY K
Sbjct: 344 FHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAK 403

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G V+ A  VF    +K V  W+A+I+G+ ++G   +++ ++  MK++GV PN++TF+G+
Sbjct: 404 CGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGL 463

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLV EG   F+ M ++  + P ++HY C+VDLLGRAG L EA   I  +P+ P
Sbjct: 464 LTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEP 522

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
            V+ WGALL ACK +    +GE    KL  L P + G +V LSN++AS   WD V  VR 
Sbjct: 523 GVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRV 582

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
           +M  +G+ K  G S+IE NG +  F  GD++HP   EI + L  + ++LK  G+ P T  
Sbjct: 583 LMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTES 642

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  D++ EEKE  L  HSE++A+A+GLI+ +P   +RI KNLR C +CH+A K IS+  +
Sbjct: 643 VLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVE 702

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI+VRD +RFHHFK G CSC D+W
Sbjct: 703 REIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 223/496 (44%), Gaps = 74/496 (14%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           +   QI ++++++GL  + F  ++L+  S++L    ++ Y+ K+F     P+ F++N ++
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLG---QICYARKLFDEFCYPDVFMWNAII 126

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           R+Y + N+ +  + +Y+ M    V  D +T+P + +A    L      +IH  ++K GF 
Sbjct: 127 RSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFG 186

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           SDV+V N L+ +YA CG +  A+ +FD      +VSW SI++GY       EA  ++++M
Sbjct: 187 SDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM 246

Query: 224 ------PERNIIAS---------------------------------NSMIVLFGRKGNV 244
                 P+   + S                                  S+   + + G V
Sbjct: 247 RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLV 306

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             A   F +M   +++ W+A+IS Y +N   EEA+ LF  MI   +  D V V S + A 
Sbjct: 307 TVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLAS 366

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A +  ++    +     K      I +  +LI MY+ CG +  A ++FD   + D++ W+
Sbjct: 367 AQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWS 426

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
           +M                               I GY  H Q  E ++L+  M+  G+ P
Sbjct: 427 AM-------------------------------IMGYGLHGQGWEAINLYHVMKQAGVFP 455

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           ++ T + +++AC H   + +G  +   ++   +   +   + ++D+  + G +  A    
Sbjct: 456 NDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFI 515

Query: 485 HGTE-EKGVSSWNALI 499
                E GVS W AL+
Sbjct: 516 MKIPIEPGVSVWGALL 531



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 144/300 (48%), Gaps = 12/300 (4%)

Query: 338 MYSSCGEITTAEKLFDAGHNLDLIS--------WNSMISGYLKCGSVEKARALFDAMIEK 389
            Y+S  + +T ++  D  HN  +IS           +++G    G +  AR LFD     
Sbjct: 58  FYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYP 117

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
           DV  W+ +I  Y++++ + +T+ ++  M+  G+ PD  T   V+ ACT L+       IH
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
             I K G   +  +   L+ +Y K G +  A  VF G   + + SW ++I G+A NG A 
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++L MFS+M+ +GV P+ I  V +L A   +  +++G R  +  + +  LE        +
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQG-RSIHGFVIKMGLEDEPALLISL 296

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPD 627
                + G++  A+   + M  + +V  W A++    K+G  E    +   ++   ++PD
Sbjct: 297 TAFYAKCGLVTVAKSFFDQMK-TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPD 355


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/519 (41%), Positives = 314/519 (60%), Gaps = 33/519 (6%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           +F+ M++  V  D    VS+L ACA     + G   HA+AVK+G   +  ++  LI+MY+
Sbjct: 120 VFVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYA 179

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                                          +CG    AR  F       VVS++ MI+ 
Sbjct: 180 -------------------------------ECGDARAARVTFGRADGDCVVSYNAMIAA 208

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN 460
             +  +  E L LF EMQ  G+ P   T++SV+SAC  L AL  G+W+H Y+RK GL   
Sbjct: 209 AVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSL 268

Query: 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520
             + T L+DMY K G +++A+ VF G E +   +W+ +I+ +A +G   +++ +F EMKK
Sbjct: 269 VKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKK 328

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580
            G+ P++ITF+G+L AC H GLV EG R+F+ M ++H + P  KHYGC+ DLL R+G L+
Sbjct: 329 QGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLE 387

Query: 581 EAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
            A + I+ +P++P    W  LL AC  HGD E+G+RV  +++EL   H G +V+ SN+ A
Sbjct: 388 RAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCA 447

Query: 641 SKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700
           + G W+++  VR +M  +GVVK+PGCS IE +  +HEF AGD  HP+  E   M+DE+  
Sbjct: 448 NTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVID 507

Query: 701 KLKLEGYAPDTLEV-AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
           +LKL GY PDT  V   ++ +EEK  +L  HSEKLAIAFGL+  +P   +R++KNLR+C 
Sbjct: 508 QLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCP 567

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH+ AKF+S  F+R I++RD +RFHHF+ G CSC D+W
Sbjct: 568 DCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/521 (21%), Positives = 213/521 (40%), Gaps = 74/521 (14%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDL-LPFIEMSYSFKIFAFL 91
           L +HL  C S +   Q+ +  +  GL A     +RL+   T        ++Y+ ++F  +
Sbjct: 28  LLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRV 87

Query: 92  ESPNGFI-FNTMMRAYIQRNVPQQA-----ICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
             P+  + +NT++R Y + +    +     + ++  ML   V  D YT+  L +A A   
Sbjct: 88  TQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAAR 147

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           +   G+  H   +K G     YV  TLINMYA CGD  AAR  F  +    +VS+N+++A
Sbjct: 148 AGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIA 207

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
             V +    EA  ++ +M  +                                       
Sbjct: 208 AAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGS 267

Query: 228 -IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            +  S +++ ++ + G++ +A  +F+ M  +D  +WS +I  Y  +    EA+ LF  M 
Sbjct: 268 LVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMK 327

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D++  + +L AC++  +V  G          GI   I     +  + +  G++ 
Sbjct: 328 KQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLE 387

Query: 347 TAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWSTMIS 399
            A K  D    N   I W +++S     G VE  + +F+ ++E       D V +S + +
Sbjct: 388 RAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCA 447

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
                ++ +    L   M   G        V  +  C+   +++    +H +   +G   
Sbjct: 448 NTGYWEEMNRVRKL---MSDKG--------VVKVPGCS---SIEIDNTVHEFFAGDGRHP 493

Query: 460 NSILGTTLIDMYMK----LGCVDNALEVFH---GTEEKGVS 493
            S     ++D  +     +G + +   VFH   G EEK +S
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAIS 534



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 8/237 (3%)

Query: 379 ARALFDAMIE-KDVVSWSTMISGYAQHDQFSET-----LSLFMEMQHHGIRPDEATLVSV 432
           AR +FD + +  D V ++T++ GYA+    S +     + +F+ M   G+ PD  T VS+
Sbjct: 80  ARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           + AC    A + G+  HA   K G   +  +  TLI+MY + G    A   F   +   V
Sbjct: 140 LKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCV 199

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            S+NA+I     +    ++L +F EM+  G+ P  +T + VL AC  +G +  G R  + 
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLG-RWLHD 258

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +++  L    K    +VD+  + G L++A  + + M  S D   W  ++ A   HG
Sbjct: 259 YVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGME-SRDRQAWSVMIVAYANHG 314


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/556 (40%), Positives = 337/556 (60%), Gaps = 35/556 (6%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F+     ++  ++ALI  +  +  Y EA+ L+  M+   ++ D  ++ S+L AC +
Sbjct: 90  ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 149

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              ++ G  VH+ A+K+G        N L+ +                           +
Sbjct: 150 QLALREGREVHSRALKLGFS-----SNRLVRL--------------------------RI 178

Query: 367 ISGYLKCGSVEKARALFDAMIE----KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           +  Y KCG +  AR +F+ M E    KD V W+ MI G+ ++++ +  L  F  MQ   +
Sbjct: 179 MELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV 238

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RP+E T+V V+SAC+ L AL+ G+W+H+Y+RK  +++N  +G  LI+MY + G +D A  
Sbjct: 239 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 298

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   +++ V ++N +I G +MNG + +++E+F  M    + P  +TFVGVL AC H GL
Sbjct: 299 VFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGL 358

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           VD G   F+SM +++R+EP  +HYGCMVDLLGR G L+EA +LI +M M+PD    G LL
Sbjct: 359 VDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 418

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
            ACK H + E+GE+V ++L +      G +VLLS+++AS G+W +  +VR  M   G+ K
Sbjct: 419 SACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 478

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PGCS IE N  IHEFL GD  HPQ   I   L+E+ + L+LEGY P+   V  DI+  E
Sbjct: 479 EPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGE 538

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           KE  L  HSE+LAI +GLI+  P   IR+MKNLR+C DCH+A K I++   R+IVVRDR+
Sbjct: 539 KEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRN 598

Query: 783 RFHHFKHGSCSCMDFW 798
           RFH+F++G+CSC D+W
Sbjct: 599 RFHYFENGACSCGDYW 614



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/583 (22%), Positives = 231/583 (39%), Gaps = 141/583 (24%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  +++ G   D ++   L+   + C  +  A ++F  +   ++  + +++ G+V++ N
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 213 VEEAKFIYNKMPERNIIASNSMIV------------------------------------ 236
             EA  +Y++M   +I+  N ++                                     
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 237 ---LFGRKGNVAEACRLFKEMPK----KDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              L+G+ G + +A R+F+EMP+    KD V W+A+I  + +NE    AL  F  M    
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  +E  +V VLSAC+ L  ++ G  VH+   K  IE  + + NALI+MYS CG I  A+
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD   + D+I++N+MISG    G   +A  LF  M+ +                    
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRR------------------- 338

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
                       +RP   T V V++AC+H                               
Sbjct: 339 ------------LRPTNVTFVGVLNACSH------------------------------- 355

Query: 470 MYMKLGCVDNALEVFHGTE-----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
                G VD   E+FH        E  +  +  ++      G  +++ ++   MK   +T
Sbjct: 356 ----GGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK---MT 408

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           P+ I    +L AC+    ++ G +    +  E R + +S  Y  +  +   +G  KEA +
Sbjct: 409 PDHIMLGTLLSACKMHKNLELGEQVAKEL--EDRGQADSGTYVLLSHVYASSGKWKEAAQ 466

Query: 585 LIESMPMSPDVATWGA------------LLGACKKHGDHEMGERVGRK--LVELQPDHDG 630
           +   M  +      G             LLG  +    H   ER+  K   +      +G
Sbjct: 467 VRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLR----HPQKERIYEKLEELNRLLRLEG 522

Query: 631 FH----VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669
           +H    V+L +I   +  W   +    + +  G++    C+MI
Sbjct: 523 YHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMI 565



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 173/377 (45%), Gaps = 47/377 (12%)

Query: 19  NAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPF 78
           N+ P    +++   + + LQ+ +   Q   I +Q+I  G   D F    L++  +     
Sbjct: 28  NSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHA- 86

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
             + Y+ +IF +  +PN +++  ++  ++      +AI LY  ML+ ++  DNY    + 
Sbjct: 87  --IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 144

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP----V 194
           +A   +L++ EG+ +H   LK GF S+  V   ++ +Y  CG+L  AR++F+E P     
Sbjct: 145 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVA 204

Query: 195 LDLVSWNSILAGYVNADNVEEA-----------------------------------KFI 219
            D V W +++ G+V  +    A                                   +++
Sbjct: 205 KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 264

Query: 220 YNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           ++ M     E N+   N++I ++ R G++ EA  +F EM  +D+++++ +IS    N   
Sbjct: 265 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 324

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNA 334
            +A+ LF  M+  R+    V  V VL+AC++  +V  G  + H++A    +E  I     
Sbjct: 325 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 384

Query: 335 LIHMYSSCGEITTAEKL 351
           ++ +    G +  A  L
Sbjct: 385 MVDLLGRVGRLEEAYDL 401



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 158/362 (43%), Gaps = 32/362 (8%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +L   GH+ D      ++    KC +++ A  +F      +V  ++ +I G+     + E
Sbjct: 61  QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLE 120

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            + L+  M H  I PD   + S++ AC   +AL +G+ +H+   K G   N ++   +++
Sbjct: 121 AIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIME 180

Query: 470 MYMKLGCVDNALEVFHGTEE----KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +Y K G + +A  VF    E    K    W A+I GF  N   +++LE F  M+   V P
Sbjct: 181 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 240

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE T V VL AC  +G ++ G R  +S +++  +E N      ++++  R G + EA+ +
Sbjct: 241 NEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 299

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGFHVLLSNIHASKG 643
            + M    DV T+  ++     +G       + R +V   L+P +  F V + N  +  G
Sbjct: 300 FDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTF-VGVLNACSHGG 357

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
             D   E                       I H      R  PQI     M+D + +  +
Sbjct: 358 LVDFGFE-----------------------IFHSMARDYRVEPQIEHYGCMVDLLGRVGR 394

Query: 704 LE 705
           LE
Sbjct: 395 LE 396



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D+  ++S++    H+   +Q   IHA + +NG   +  +   L+    K   +D A  +F
Sbjct: 38  DQKQIISLLQRSRHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 94

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
             T    V  + ALI GF  +G   ++++++S M    + P+      +L AC     + 
Sbjct: 95  QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 154

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGAL 601
           EG R  +S   +     N      +++L G+ G L +A  + E MP   ++ D   W A+
Sbjct: 155 EG-REVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 213

Query: 602 L 602
           +
Sbjct: 214 I 214


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/515 (42%), Positives = 325/515 (63%), Gaps = 17/515 (3%)

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
            + +L  C  L  +K    VHA  +  G+  +     + I + SS    T A  +F+   
Sbjct: 12  TLQLLEKCKTLDTLK---QVHAHMITTGL-IFHTYPLSRILLISSTIVFTHALSIFNHIP 67

Query: 357 NLDLISWNSMISG------YLKCGSVEKARALFDAMIEKDVVSWSTMISG-----YAQHD 405
           N  +  +N++IS       +        +R L    ++ +  ++ ++        + +HD
Sbjct: 68  NPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHD 127

Query: 406 QF--SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
            F     L+LF+EMQ   I+ +E TLV++ISAC  L AL QG W H Y+ K+ LK+N  +
Sbjct: 128 IFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFV 187

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT LIDMY K GC+D A ++F     +    +NA+I GFA++G   ++L++F +M   G+
Sbjct: 188 GTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGL 247

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+++T V  + +C H+GLV+EG   F SM + + +EP  +HYGC+VDLLGRAG L+EAE
Sbjct: 248 APDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAE 307

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           E + +MPM P+   W +LLGA + HG+ E+GE V + L++L+P+  G +VLLSN++AS  
Sbjct: 308 ERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASIN 367

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           RWDDV  VR +M   G+ K+PG S++E  G +HEFL GD+THP+  EI   L+EM+++L 
Sbjct: 368 RWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLH 427

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             G+ P TLEV FDI++EEKE  L  HSE+LAIAF LI      PIRI+KNLR+C DCHT
Sbjct: 428 EYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHT 487

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           ++K IS+ ++REI+VRDR+RFHHFK G+CSC D+W
Sbjct: 488 SSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 188/409 (45%), Gaps = 47/409 (11%)

Query: 26  PTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           PT+ L      L+KC++     Q+ + MI TGLI  T+  SR++  S+ ++     +++ 
Sbjct: 11  PTLQL------LEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIV----FTHAL 60

Query: 86  KIFAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASA- 142
            IF  + +P  F++NT++ +    +     A  LY +++ +  +  + +T+P L +A   
Sbjct: 61  SIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGS 120

Query: 143 ---LRLSVFEGKLIHDHVLKAGFDSDVYVNN-TLINMYAVCGDLSAARKLFDESPVLDLV 198
              LR  +F  K +    ++    S +  N  TL+ + + C +L A          L   
Sbjct: 121 QPWLRHDIFLIKSVLTLFIEMQ-KSLIKANEVTLVALISACAELGA----------LSQG 169

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           +W  +   YV   N++   F+             ++I ++ + G +  AC+LF ++P +D
Sbjct: 170 AWAHV---YVLKHNLKLNHFV-----------GTALIDMYSKCGCLDLACQLFDQLPHRD 215

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-H 317
            + ++A+I  +  +    +AL LF  M    +  D+V +V  + +C+++ +V+ G  V  
Sbjct: 216 TLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFE 275

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSMISGYLKCGSV 376
           ++    G+E  +     L+ +    G +  A E++ +     + + W S++      G++
Sbjct: 276 SMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNL 335

Query: 377 EKARALFDAMI--EKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
           E    +   +I  E +      ++S  YA  +++ +   +   M+ HGI
Sbjct: 336 EIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGI 384


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/640 (37%), Positives = 345/640 (53%), Gaps = 77/640 (12%)

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD------------------ 190
           + + +H  +++  F  +V++ N LI++Y  CG L  ARK+FD                  
Sbjct: 42  DARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLM 101

Query: 191 ------ES-------PVLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP--- 224
                 ES       P  D  SWNS++AG+   D  EEA           F+ N      
Sbjct: 102 RWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGS 161

Query: 225 --------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
                                       ++   + +I  + + G V  A R+F  M +K+
Sbjct: 162 GLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKN 221

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           +VSW+ LI+CYEQN    EAL  F  M +     DEV + SV+SACA L   K G  +HA
Sbjct: 222 VVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHA 281

Query: 319 LAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
             VK       + L NAL+ MY+ CG +  A  +FD     + +S  +M+SGY K  SV+
Sbjct: 282 RVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVK 341

Query: 378 KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
            AR++F  + +KD+VSW+ +I+GY Q+ +  E L LF  ++   + P   T  ++++A  
Sbjct: 342 AARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASA 401

Query: 438 HLVALDQGKWIHAYIRKNGLKINS------ILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           +L  L+ G+  H+++ K+G +  S       +G +LIDMYMK G V+  L VF    EK 
Sbjct: 402 NLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKD 461

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
             SWN +IIG+A NG   ++LE+F +M +SG  P+ +T +G L AC H GLV+EG R+F 
Sbjct: 462 HVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFF 521

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           SM +EH L P   HY CMVDLLGRAG L+EA++LIESMP  PD   W +LL ACK H + 
Sbjct: 522 SMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNI 581

Query: 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
            +G+ V  K+ E+ P   G +VLL+N+++  GRW D + VR +M RRGVVK PGCS I+ 
Sbjct: 582 TLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDI 641

Query: 672 NGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
              +H F+  D+ HPQ  EI ++L  + K ++  GY PD 
Sbjct: 642 QSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDA 681



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 178/377 (47%), Gaps = 32/377 (8%)

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D      +L  C  L   +   SVH   ++      + +QN LI +Y  CG +  A K+
Sbjct: 22  TDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKV 81

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           FD     ++ S+NS+IS  ++ G V+++  LF  M EKD  SW++MI+G+AQHD+F E L
Sbjct: 82  FDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEAL 141

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
             F+ M       ++ +  S +SAC+ L  L  G  IH  I K+   ++  +G+ LID Y
Sbjct: 142 DWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFY 201

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G V  A  VF G EEK V SWN LI  +  NG A ++LE F  M + G  P+E+T  
Sbjct: 202 SKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLA 261

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            V+ AC  +    EG +    +++  +   +      +VD+  + G + EA  + + MP+
Sbjct: 262 SVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321

Query: 592 ------------------------------SPDVATWGALLGACKKHGDHEMGERVGR-- 619
                                           D+ +W AL+    ++G++E    + R  
Sbjct: 322 RNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRML 381

Query: 620 KLVELQPDHDGFHVLLS 636
           K   + P H  F  LL+
Sbjct: 382 KRESVCPTHYTFGNLLN 398



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 198/448 (44%), Gaps = 74/448 (16%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           D F  S LI F +       +  + ++F  +E  N   +N ++  Y Q     +A+  + 
Sbjct: 190 DVFMGSGLIDFYSKCGL---VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFG 246

Query: 121 LMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG-FDSDVYVNNTLINMYAVC 179
            M       D  T   +  A A   +  EG  IH  V+K+  F +D+ + N L++MYA C
Sbjct: 247 RMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKC 306

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFG 239
           G ++ AR +FD  PV + VS  ++++GY  + +V+ A+ ++  + +++I++ N++I    
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALI---- 362

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
                                      + Y QN   EEAL LF  +    V        +
Sbjct: 363 ---------------------------AGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395

Query: 300 VLSACANLTVVKAGTSVHALAVKIGI------ECYINLQNALIHMYSSCGEITTAEKLFD 353
           +L+A ANL  ++ G   H+  VK G       E  I + N+LI MY  CG +    ++F+
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D +SWN+MI GY                               AQ+    E L L
Sbjct: 456 NMVEKDHVSWNTMIIGY-------------------------------AQNGYGMEALEL 484

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYM 472
           F +M   G +PD  T++  + AC+H   +++G ++  +  +++GL       T ++D+  
Sbjct: 485 FQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLG 544

Query: 473 KLGCVDNALEVFHG-TEEKGVSSWNALI 499
           + GC++ A ++     ++     W++L+
Sbjct: 545 RAGCLEEAKDLIESMPKQPDAVVWSSLL 572



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 54/276 (19%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC    +   +  +M +   +++T   S   K ++       +  +  +FA ++  +   
Sbjct: 305 KCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSAS-------VKAARSMFATIKQKDIVS 357

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++  Y Q    ++A+ L++++   +V   +YT+  L  ASA    +  G+  H HV+
Sbjct: 358 WNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVV 417

Query: 159 KAGF------DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           K GF      + D++V N+LI+MY  CG +    ++F+     D VSWN+++ GY     
Sbjct: 418 KHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGY 477

Query: 213 VEEAKFIYNKMPE--------------------------RNIIAS--------------N 232
             EA  ++ KM E                          R    S               
Sbjct: 478 GMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYT 537

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKK-DLVSWSALIS 267
            M+ L GR G + EA  L + MPK+ D V WS+L+S
Sbjct: 538 CMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLS 573


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/766 (33%), Positives = 405/766 (52%), Gaps = 83/766 (10%)

Query: 84  SFKIFAFLESPNGFI--FNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           +F IF  +E+    +  +++++  +   RN  +      +L+L + V  + Y +  + +A
Sbjct: 106 AFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRA 165

Query: 141 SALRLSVFE-GKLIHDHVLKAG-FDSDVYVNNTLINMY---AVCGDLSAARKLFDESPVL 195
             L+   F+ G  +   VLK G FDS V V   LI+M+       DL +ARK+FD+    
Sbjct: 166 -CLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREK 224

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKM-------PER---------------------- 226
           ++V+W  ++         +EA  ++ +M       P+R                      
Sbjct: 225 NVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKEL 284

Query: 227 -----------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM- 274
                      ++    S++ ++ + G V EA ++F  M + +++SW+AL++ Y +    
Sbjct: 285 HSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGG 344

Query: 275 YE-EALVLFMNMIDHRVMVDEVVVVS-VLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
           YE EA+ +F NM+    +       S VL ACA+L     G  VH   +K+G+       
Sbjct: 345 YEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSA----- 399

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
                                    +D +  N ++S Y K G +E AR  FD + EK++V
Sbjct: 400 -------------------------IDCVG-NGLVSVYAKSGRMESARKCFDVLFEKNLV 433

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           S + +     +    +    L  E+++ G      T  S++S    +  + +G+ IHA +
Sbjct: 434 SETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMV 493

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G + +  +   LI MY K G  + AL+VF+  E+  V +W ++I GFA +G A K+L
Sbjct: 494 VKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKAL 553

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           E+F  M ++GV PN++T++ VL AC H+GL+DE  +HF SM   H + P  +HY CMVDL
Sbjct: 554 ELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDL 613

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632
           LGR+G+L EA E I SMP   D   W   LG+C+ H + ++GE   + ++E +P     +
Sbjct: 614 LGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATY 673

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID 692
           +LLSN++A++GRW+DV  +R  M ++ + K  G S IE    +H+F  GD  HP+  +I 
Sbjct: 674 ILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIY 733

Query: 693 NMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIM 752
             LDE+A K+K  GY P+T  V  D++ E+KE  LF+HSEKLA+AF LI+   P PIR+ 
Sbjct: 734 EKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVF 793

Query: 753 KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           KNLR+C DCHTA K+IS    REIVVRD +RFHH K G+CSC D+W
Sbjct: 794 KNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 175/367 (47%), Gaps = 46/367 (12%)

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFK 252
           L++ + +L   +   N    K +++K+   N+    +  NS+I L+ +  +   A  +F+
Sbjct: 52  LITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQ 111

Query: 253 EM--PKKDLVSWSALISCYEQNEMYEEALVLFMN-MIDHRVMVDEVVVVSVLSACANLTV 309
            M   K+D+VS+S++ISC+  N    +A+ +F   ++   V  +E    +V+ AC     
Sbjct: 112 SMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGF 171

Query: 310 VKAGTSVHALAVKIG-IECYINLQNALIHMY---SSCGEITTAEKLFDAGHNLDLISWNS 365
            K G  +    +K G  + ++ +   LI M+    S  ++ +A K+FD     ++++W  
Sbjct: 172 FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTW-- 229

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRP 424
                                        + MI+  AQ+    E + LF+EM    G  P
Sbjct: 230 -----------------------------TLMITRLAQYGYNDEAIDLFLEMLVSSGYVP 260

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D  TL  +IS C  +  L  GK +H+++ ++GL ++  +G +L+DMY K G V  A +VF
Sbjct: 261 DRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVF 320

Query: 485 HGTEEKGVSSWNALIIGFAM--NGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMG 541
            G  E  V SW AL+ G+     G   +++ MFS M  + GV PN  TF GVL AC  + 
Sbjct: 321 DGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLP 380

Query: 542 LVDEGHR 548
             D G +
Sbjct: 381 DFDFGEQ 387



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 139/274 (50%), Gaps = 15/274 (5%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM--IEKDVVSWSTMISGYAQHDQF 407
           KL  +   LD +  NS+I+ Y K      A ++F +M   ++DVVS+S++IS +A +   
Sbjct: 77  KLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNC 136

Query: 408 SETLSLFMEMQ-HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGT 465
            + + +F ++    G+ P+E    +VI AC        G  +  ++ K G    +  +G 
Sbjct: 137 LKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGC 196

Query: 466 TLIDMYMKLGC----VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KK 520
            LIDM++K GC    +++A +VF    EK V +W  +I   A  G  D+++++F EM   
Sbjct: 197 ELIDMFVK-GCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVS 255

Query: 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGML 579
           SG  P+  T  G++  C  +  +  G    + +I+   +       GC +VD+  + G++
Sbjct: 256 SGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLC--VGCSLVDMYAKCGLV 313

Query: 580 KEAEELIESMPMSPDVATWGALL-GACKKHGDHE 612
           +EA ++ + M    +V +W AL+ G  +  G +E
Sbjct: 314 QEARKVFDGM-REHNVMSWTALVNGYVRGGGGYE 346


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 332/559 (59%), Gaps = 38/559 (6%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSA 303
           +A + F E+P  + V  +A+ S Y +N +   +L LF  +I       VDE   +   SA
Sbjct: 143 DARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSA 202

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            A +      +S+HAL VK G++                          DAG        
Sbjct: 203 SARIPDCGITSSLHALVVKTGLD-------------------------GDAG------VV 231

Query: 364 NSMISGYLKCGSVE--KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-- 419
           N+M+  Y K G  +   AR +FD M EKDVVSW++MI+ YAQ+   ++ L L+ +M +  
Sbjct: 232 NTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVS 290

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             I+ +  TL +++ AC H   +  GK IH  + + GL+ N  +GT+++DMY K G V+ 
Sbjct: 291 GSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEM 350

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A + F   +EK + SW+A+I G+ M+G   ++L++F+EM +SG  PN ITF+ VL AC H
Sbjct: 351 ARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSH 410

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GL+D+G   +N+M +   +EP  +HYGCMVDLLGRAG L EA  LI+ M + PD A WG
Sbjct: 411 AGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWG 470

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           ALL AC+ H + E+ E   ++L EL   + G++VLLSNI+A  G W DV  +R ++  RG
Sbjct: 471 ALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRG 530

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K PG S +E  G  H F  GD++HPQ  EI + L ++ +K++  GY P+T  V  D+D
Sbjct: 531 IEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLD 590

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EEK + L  HSEKLAIAF L+   P + I ++KNLR+C DCHTA K I++   REI+VR
Sbjct: 591 EEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVR 650

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D  RFHHFK GSCSC D+W
Sbjct: 651 DLQRFHHFKDGSCSCGDYW 669



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 186/398 (46%), Gaps = 80/398 (20%)

Query: 150 GKLIHDHVLKAG-FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           G+ +H   +++G F SD +  + L++MY  C     ARK FDE P  + V   ++ +GYV
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 209 -------------------NADNVEEAKFIYN-----KMPERNIIAS------------- 231
                              +A  V+EA  +       ++P+  I +S             
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 232 ----NSMIVLFGRKG--NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
               N+M+  + + G  ++  A ++F  M +KD+VSW+++I+ Y QN M  +AL L+  M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 286 ID--HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
           ++    +  + V + ++L ACA+   ++ G  +H   V++G+E  + +  +++ MYS CG
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            +  A K F      +++SW++MI                               +GY  
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMI-------------------------------TGYGM 375

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSI 462
           H    E L +F EM   G  P+  T +SV++AC+H   LD+G+ W +A  ++ G++    
Sbjct: 376 HGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVE 435

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALI 499
               ++D+  + GC+D A  +    + K  ++ W AL+
Sbjct: 436 HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALL 473



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 218/512 (42%), Gaps = 77/512 (15%)

Query: 54  ILTGLI-ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVP 112
           I +GL  +D F+AS L+         I+   + K F  + SPN  I   M   Y++ N+ 
Sbjct: 116 IRSGLFPSDPFSASALLHMYNHCSRPID---ARKAFDEIPSPNPVIITAMASGYVRNNLV 172

Query: 113 QQAICLYKLMLNNN--VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
             ++ L++ ++ +     VD     +   ASA          +H  V+K G D D  V N
Sbjct: 173 YPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVN 232

Query: 171 TLINMYAVCG--DLSAARKLFDESPVLDLVSWNSILAGYV-------------------- 208
           T+++ YA  G  DL AARK+FD     D+VSWNS++A Y                     
Sbjct: 233 TMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADALGLYRKMLNVSG 291

Query: 209 -----------------NADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEA 247
                            +A  ++  K I+N++     E N+    S++ ++ + G V  A
Sbjct: 292 SIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMA 351

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
            + F+++ +K+++SWSA+I+ Y  +   +EAL +F  M       + +  +SVL+AC++ 
Sbjct: 352 RKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHA 411

Query: 308 TVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHNLDLISWNS 365
            ++  G    +A+  + GIE  +     ++ +    G +  A  L  +     D   W +
Sbjct: 412 GLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGA 471

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVS--WSTMISG-YAQHDQFSETLSLFMEMQHHGI 422
           ++S      +VE A      + E D  +  +  ++S  YA+   + +   + + ++  GI
Sbjct: 472 LLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGI 531

Query: 423 RPDEATLVSVISACTHLVAL-----DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
                     +   THL  +      Q K I++Y+ K            L++   + G V
Sbjct: 532 EKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGK------------LLEKMQEAGYV 579

Query: 478 DNALEVFHGTEEKGVSSW-----NALIIGFAM 504
            N   V H  +E+  +S        L I FA+
Sbjct: 580 PNTGSVLHDLDEEEKASALHIHSEKLAIAFAL 611



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 37/302 (12%)

Query: 313 GTSVHALAVKIGIECYINLQ-NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
           G  +H LA++ G+        +AL+HMY+ C     A K FD   + + +   +M SGY+
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           +   V  + ALF  +I           SG A                      DEA  + 
Sbjct: 168 RNNLVYPSLALFRKLIA----------SGSAT-------------------AVDEAAALV 198

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD--NALEVFHGTEE 489
             SA   +        +HA + K GL  ++ +  T++D Y K G  D   A +VF  T E
Sbjct: 199 AFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFD-TME 257

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLGACRHMGLVDEGH 547
           K V SWN++I  +A NG++  +L ++ +M      +  N +T   +L AC H G +  G 
Sbjct: 258 KDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGK 317

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
              N +++   LE N      +VD+  + G ++ A +  + +    ++ +W A++     
Sbjct: 318 CIHNQVVRMG-LEENVYVGTSVVDMYSKCGRVEMARKAFQKIK-EKNILSWSAMITGYGM 375

Query: 608 HG 609
           HG
Sbjct: 376 HG 377


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/567 (40%), Positives = 333/567 (58%), Gaps = 36/567 (6%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           N +I ++ + G + +A  +F +MP +++VSW+ +IS Y   ++ ++AL   + M+   V 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +     SVL AC  L  ++    +H   +KIG++  + +++ALI +YS  GE+      
Sbjct: 64  PNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGEL------ 114

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                                    E A  +FD M+  D+V WS++I+G+AQ+    E L
Sbjct: 115 -------------------------ENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEAL 149

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF  M+  G    + TL SV+ ACT L  L+ G+ +H ++ K    +  IL   L+DMY
Sbjct: 150 RLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDL--ILNNALLDMY 207

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +++A  VF    EK V SW+ +I G A NG + ++L++F  MK  G+ PN +T V
Sbjct: 208 CKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIV 267

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLV+EG  +F+SM +   ++P  +HYGCM+DLLGRAG L EA +LI  M  
Sbjct: 268 GVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMEC 327

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD  TW ALL AC+ H + ++     ++++ L P   G +VLLSNI+A+  RW+DV EV
Sbjct: 328 EPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEV 387

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R  M  RG+ K PGCS IE +  IH F+ GDR+HPQI EI+  L+++  KL   GY PDT
Sbjct: 388 RRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDT 447

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D++ E+ + +L  HSEKLAI FGL+++     IRI KNLRIC DCH   K +++ 
Sbjct: 448 NFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKM 507

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             R IV+RD  R+HHF+ G CSC DFW
Sbjct: 508 EQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 168/371 (45%), Gaps = 71/371 (19%)

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA---------------D 211
           ++ N LINMY   G L  A+ +FD+ P  ++VSW ++++ Y  A               +
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 212 NVEEAKFIYNKM---------------------PERNIIASNSMIVLFGRKGNVAEACRL 250
            V    F Y+ +                      + ++   +++I ++ R G +  A R+
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F EM   DLV WS++I+ + QN   +EAL LF  M     +  +  + SVL AC  L ++
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           + G  VH   +K   +  +N  NAL+ MY  CG +  A  +F      D+ISW++MI+G 
Sbjct: 181 ELGRQVHVHVLKYDQDLILN--NALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            +                          +GY++     E L LF  M+  GI+P+  T+V
Sbjct: 239 AQ--------------------------NGYSK-----EALKLFESMKVLGIKPNYVTIV 267

Query: 431 SVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE- 488
            V+ AC+H   +++G  + H+     G+         +ID+  + G +  A+++ +  E 
Sbjct: 268 GVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMEC 327

Query: 489 EKGVSSWNALI 499
           E    +W AL+
Sbjct: 328 EPDAVTWRALL 338



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 195/419 (46%), Gaps = 47/419 (11%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   + TM+ AY    +  +A+    LML   V  + +TY  + +A      
Sbjct: 22  VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACD---G 78

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +F  + +H  ++K G DSDV+V + LI++Y+  G+L  A ++FDE    DLV W+SI+AG
Sbjct: 79  LFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAG 138

Query: 207 YVNADNVEEAKFIYNKMP-------------------------------------ERNII 229
           +    + +EA  ++ +M                                      ++++I
Sbjct: 139 FAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLI 198

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            +N+++ ++ + G++ +A  +F  M +KD++SWS +I+   QN   +EAL LF +M    
Sbjct: 199 LNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLG 258

Query: 290 VMVDEVVVVSVLSACANLTVVKAGT-SVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
           +  + V +V VL AC++  +V+ G    H++    GI+        +I +    G ++ A
Sbjct: 259 IKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEA 318

Query: 349 EKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQH 404
             L +      D ++W ++++      +V+ A      ++    +D  ++  + + YA  
Sbjct: 319 VDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANT 378

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
            ++++   +   M + GI+ +     S I     + A   G   H  IR+  +++N ++
Sbjct: 379 QRWNDVAEVRRTMTNRGIKKEPGC--SWIEVSKQIHAFILGDRSHPQIREINIQLNQLI 435


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/753 (33%), Positives = 398/753 (52%), Gaps = 76/753 (10%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   + +++  Y+Q       + L+  M    V  + +T+  +  A A + +
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V  G+ +H   +K G  S V+V N+LINMY+ CG +  A+ +F +    D+VSWN+++AG
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAG 276

Query: 207 YV-NADNVEEAKFIYNK---MPERNIIASNSMIVL------------------------- 237
            + N   +E  +  ++    M + +    +++I L                         
Sbjct: 277 LLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSD 336

Query: 238 ----------FGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                     + + G + +A  +F  MP  +++VSW+A+I    QN     A  LF  M 
Sbjct: 337 GNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMR 396

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  +E    +VL+A   + + +    +HA  +K       N Q+A      S G   
Sbjct: 397 EDNVKPNEFTYSTVLTASIPILLPQ----IHAQIIKT------NYQHA-----PSVG--- 438

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                             ++++ Y K G+ E+A ++F  +  KDVV+WS M+S Y+Q   
Sbjct: 439 -----------------TALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGD 481

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILGT 465
                ++F++M   G++P+E T+ S I AC    A +DQG+  HA   K   +    +G+
Sbjct: 482 CDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGS 541

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+ MY + G +D+A  VF    ++ + SWN++I G+A +G + ++L+ F +M+  G+  
Sbjct: 542 ALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEM 601

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           +  TF+ V+  C H GLV EG ++F+SM+ +H + P  +HY CMVDL  RAG L E   L
Sbjct: 602 DGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNL 661

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           IE MP       W  LLGAC+ H + E+G+   +KL+ L+PD    +VLLSNI+A+ GRW
Sbjct: 662 IEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRW 721

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
            +  EVR +M  + V K  GCS I+    +H F+A D++HP   +I   L  M  +LK E
Sbjct: 722 KERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQE 781

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY P+T  V  DI +E+KET L  HSE+LA+AFGLI   P  P++I+KNLR+C DCH   
Sbjct: 782 GYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVM 841

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K +S   DREI++RD  RFHHF  G+CSC DFW
Sbjct: 842 KMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 191/415 (46%), Gaps = 51/415 (12%)

Query: 243 NVAEACRLFKEMPKKDLVSWS-----ALISCYEQNEMYEEALVLFMNMIDHRV-MVDEVV 296
           N   A +    MP +D  + S     A++    + +   EAL  F+++  HR   V    
Sbjct: 44  NAPGARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDV--HRCGRVQGAA 101

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIE-CYINLQNALIHMYSSCGEITTAEKLFDAG 355
           V  VL  C  +    +G  +H L VK G +   + +  AL+ MY                
Sbjct: 102 VSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMY---------------- 145

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
                          +KCG VE  R +F+ M +++VV+W+++++GY Q    S+ ++LF 
Sbjct: 146 ---------------MKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFF 190

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
            M+  G+ P+  T  SV+SA     A+D G+ +HA   K G +    +  +LI+MY K G
Sbjct: 191 RMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCG 250

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            V+ A  VF   E + + SWN L+ G  +N    ++L++F + + S    ++ T+  V+ 
Sbjct: 251 LVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIK 310

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
            C ++  +    R  +S + +H    +      ++D   + G L +A  +   MP S +V
Sbjct: 311 LCANLKQLALA-RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNV 369

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFH--------VLLSNIHA 640
            +W A++G C ++ D  +   +  ++ E  ++P+   +         +LL  IHA
Sbjct: 370 VSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHA 424



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 48/385 (12%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            +++ ++ + G V +   +F+ MPK+++V+W++L++ Y Q     + + LF  M    V 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            +     SVLSA A+   V  G  VHA +VK G    + + N+LI+MYS CG +  A+ +
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F      D++SWN++++G L                                ++   E L
Sbjct: 259 FRQMETRDMVSWNTLMAGLL-------------------------------LNEHQLEAL 287

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF + +    +  ++T  +VI  C +L  L   + +H+ + K+G   +  + T ++D Y
Sbjct: 288 QLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAY 347

Query: 472 MKLGCVDNALEVF---HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
            K G +D+A  +F    G++   V SW A+I G   N     +  +FS M++  V PNE 
Sbjct: 348 SKCGELDDAFNIFLLMPGSQN--VVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM-VDLLGRAGMLKEAEELIE 587
           T+  VL A   + L           I    ++ N +H   +   LL     L   EE + 
Sbjct: 406 TYSTVLTASIPILL---------PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALS 456

Query: 588 SMPM--SPDVATWGALLGACKKHGD 610
              M    DV  W A+L    + GD
Sbjct: 457 IFKMIDHKDVVAWSAMLSCYSQAGD 481


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/536 (42%), Positives = 325/536 (60%), Gaps = 38/536 (7%)

Query: 269 YEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           Y +N +   +L LF  MI  D   +VDE   +   SA A +       S+HAL  KIG E
Sbjct: 171 YVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFE 230

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS--VEKARALFD 384
                                         N  ++  N+M+  Y K GS  +E AR +FD
Sbjct: 231 -----------------------------RNAGVV--NTMLDSYAKGGSRDLEVARKVFD 259

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDEATLVSVISACTHLVAL 442
            M E+DVVSW++MI+ YAQ+   +E + L+ +M +   GI+ +   L +V+ AC H  A+
Sbjct: 260 TM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAI 318

Query: 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502
             GK IH  + + GL+ N  +GT+++DMY K G V+ A   F   +EK + SW+A+I G+
Sbjct: 319 QTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGY 378

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562
            M+G   ++LE+F+EMK+SG+ PN ITF+ VL AC H GL+DEG   +N+M QE  +E  
Sbjct: 379 GMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAG 438

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
            +HYGCMVDLLGRAG L EA  LI+ M + PD A WGALL AC+ H + E+ E   ++L 
Sbjct: 439 VEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLF 498

Query: 623 ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGD 682
           EL   + G++VLLSNI+A    W DV  +R ++  R + K PG S  E  G I+ F  GD
Sbjct: 499 ELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGD 558

Query: 683 RTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLIT 742
           ++HPQ  EI + L+++ ++++  GY P+T  V  D+D+EEKE+ L  HSEKLA+AF L+ 
Sbjct: 559 KSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMN 618

Query: 743 ISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             P + I I+KNLR+C+DCHTA KFI++  +REI++RD  RFHHFK G CSC D+W
Sbjct: 619 SVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 145/281 (51%), Gaps = 38/281 (13%)

Query: 225 ERNIIASNSMIVLFGRKG--NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
           ERN    N+M+  + + G  ++  A ++F  M ++D+VSW+++I+ Y QN M  EA+ L+
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 283 MNMID--HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
             M++    +  + V + +VL ACA+   ++ G  +H   V++G+E  + +  +++ MYS
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
            CG +  A + F      +++SW++MI                               +G
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMI-------------------------------TG 377

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKI 459
           Y  H +  E L +F EM+  G+RP+  T +SV++AC+H   LD+G+ W +A  ++ G++ 
Sbjct: 378 YGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEA 437

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALI 499
                  ++D+  + GC+D A  +    + K  ++ W AL+
Sbjct: 438 GVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 478



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 146/333 (43%), Gaps = 48/333 (14%)

Query: 105 AYIQRNVPQQAICLYKLMLNNNVG--VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
            Y++ N+   ++ L++ M+ ++    VD     +   ASA          +H  + K GF
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 163 DSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           + +  V NT+++ YA  G  DL  ARK+FD +   D+VSWNS++A Y       EA  +Y
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 221 NKMP-----------------------------------------ERNIIASNSMIVLFG 239
           +KM                                          E N+    S++ ++ 
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G V  A R F+++ +K+++SWSA+I+ Y  +   +EAL +F  M    +  + +  +S
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 300 VLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF-DAGHN 357
           VL+AC++  ++  G    +A+  + GIE  +     ++ +    G +  A  L  +    
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            D   W +++S      +VE A      + E D
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELD 501



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 44/231 (19%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + K+F  +E  +   +N+M+  Y Q  +  +AI LY  MLN   G+      L A 
Sbjct: 250 DLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAV 308

Query: 140 --ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             A A   ++  GK IH+ V++ G + +VYV  ++++MY+ CG +  A + F +    ++
Sbjct: 309 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 368

Query: 198 VSWNSILAGY-----------------------------------VNADNVEEAKFIYNK 222
           +SW++++ GY                                    +A  ++E ++ YN 
Sbjct: 369 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 428

Query: 223 MPERNIIAS-----NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
           M +   I +       M+ L GR G + EA  L KEM  K D   W AL+S
Sbjct: 429 MKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLS 479


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 340/572 (59%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +++ SN +I ++ + G+V  A ++F EMP + LVSW+ +I    QN    EAL L + M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  E  + SVL ACA    +     +HA A+K  ++  + +  AL+ +Y+      
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA------ 211

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG ++ A  +F++M ++ VV+WS+M +GY Q++ 
Sbjct: 212 -------------------------KCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEM 246

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + + L+LF +    G++ D+  + SVI AC  L A+ +GK ++A + K+G   N  + ++
Sbjct: 247 YEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASS 306

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G ++ + +VF   E++ V  WNA+I G + +  + + + +F +M++ G++PN
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           ++TFV VL AC HMGLV +G ++F+ M +EH L PN  HY CMVD L RAG + EA +LI
Sbjct: 367 DVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLI 426

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             +P +   + WG+LL +C+ HG+ E+ E   +KL +++P + G ++LLSN++A+ G+WD
Sbjct: 427 SKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWD 486

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V ++R ++    V K  G S IE    +H F+ G+R HP+I EI + L+E+  +L+  G
Sbjct: 487 EVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLG 546

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  +T      + +  K+  L  HSEKLA   GL+ + P  PIRIMKNLRIC DCH+  K
Sbjct: 547 YKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMK 606

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S+ F R+++VRD +RFHHFK+G CSC DFW
Sbjct: 607 LASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 183/406 (45%), Gaps = 72/406 (17%)

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           A R  + +GK  H  +L  G  +D+  +N LINMY+ CG +  AR++FDE P   LVSWN
Sbjct: 75  AKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWN 134

Query: 202 SILAGYVNADNVEEA---------------------------------------KFIYNK 222
           +++          EA                                        F    
Sbjct: 135 TMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKA 194

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
             + N+  + +++ ++ + G + +A  +F+ MP + +V+WS++ + Y QNEMYE+AL LF
Sbjct: 195 AMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALF 254

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
               +  +  D+ ++ SV+ ACA L  +  G  V+AL  K G    I + ++LI MY+ C
Sbjct: 255 RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKC 314

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G I  + K+F      +++ WN+                               MISG +
Sbjct: 315 GGIEESYKVFRDVEKRNVVLWNA-------------------------------MISGLS 343

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINS 461
           +H +  E + LF +MQ  G+ P++ T VSV+SAC H+  + +G K+     +++ L  N 
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNV 403

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
              + ++D   + G +  A ++          S W +L+     +G
Sbjct: 404 FHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHG 449



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 139/255 (54%), Gaps = 2/255 (0%)

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G   DL++ N +I+ Y KCGSV+ AR +FD M  + +VSW+TMI    Q+ + +E L L 
Sbjct: 94  GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
           ++MQ  G    E T+ SV+ AC    AL + + +HA+  K  + +N  + T L+D+Y K 
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKC 213

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A+ VF    ++ V +W+++  G+  N + +++L +F +  ++G+  ++     V+
Sbjct: 214 GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVI 273

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC  +  + EG +  N+++ +     N      ++D+  + G ++E+ ++   +    +
Sbjct: 274 CACAGLAAMIEG-KQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRN 331

Query: 595 VATWGALLGACKKHG 609
           V  W A++    +H 
Sbjct: 332 VVLWNAMISGLSRHA 346



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 176/387 (45%), Gaps = 64/387 (16%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +Q++L GL  D   ++ LI   +       + ++ ++F  + S +   +NTM+ +  Q  
Sbjct: 88  AQILLMGLKTDLLTSNILINMYSKC---GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNG 144

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
              +A+ L   M         +T   +  A A + ++ E +L+H   +KA  D +V+V  
Sbjct: 145 EENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVAT 204

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----- 225
            L+++YA CG +  A  +F+  P   +V+W+S+ AGYV  +  E+A  ++ K  E     
Sbjct: 205 ALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKH 264

Query: 226 ----------------------------------RNIIASNSMIVLFGRKGNVAEACRLF 251
                                              NI  ++S+I ++ + G + E+ ++F
Sbjct: 265 DQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVF 324

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           +++ K+++V W+A+IS   ++    E ++LF  M    +  ++V  VSVLSAC ++ +VK
Sbjct: 325 RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVK 384

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS--------- 362
            G     L  K       +L   + H       ++ A ++F+A    DLIS         
Sbjct: 385 KGQKYFDLMTKEH-----HLAPNVFHYSCMVDTLSRAGQIFEA---YDLISKLPFNASAS 436

Query: 363 -WNSMISGYLKCGSVE----KARALFD 384
            W S+++     G++E     A+ LFD
Sbjct: 437 MWGSLLASCRTHGNLELAEVAAKKLFD 463



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 406 QFSETLS---LFMEMQHHGIRPDEATLVS----VISACTHLVALDQGKWIHAYIRKNGLK 458
           QF  +LS     +E +    +   AT VS    ++  C     L QGK  HA I   GLK
Sbjct: 37  QFFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLK 96

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            + +    LI+MY K G VD A +VF     + + SWN +I     NG  +++L++  +M
Sbjct: 97  TDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQM 156

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           ++ G   +E T   VL AC     + E     ++   +  ++ N      ++D+  + G+
Sbjct: 157 QREGTPFSEFTISSVLCACAAKCALSECQL-LHAFAIKAAMDLNVFVATALLDVYAKCGL 215

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           +K+A  + ESMP    V TW ++     ++  +E    + RK  E    HD F  L+S++
Sbjct: 216 MKDAVCVFESMP-DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF--LMSSV 272


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/658 (36%), Positives = 359/658 (54%), Gaps = 71/658 (10%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------- 224
           GD++ A K F E    D++ WN+I+ GY   + V+    +Y  M                
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 225 ------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                     N+   NS++ ++ + G ++ A  +F ++  + +V
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++IS Y QN    EAL +F  M    V  D + +VSV++A  N+  +  G S+H L 
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 227

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            K+G+E   ++  +L  MY+                               K G VE AR
Sbjct: 228 TKLGLEFEPDIVISLTTMYA-------------------------------KRGLVEVAR 256

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
             F+ M + +++ W+ MISGYA +    E + LF EM    IR D  T+ S + A   + 
Sbjct: 257 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 316

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +L+  +W+  YI K+  + ++ + T LIDMY K G +  A  VF    +K V  W+ +I+
Sbjct: 317 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 376

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+ ++G   +++ +++EMK++GV PN+ TF+G+L AC++ GLV EG   F+ ++ +H +E
Sbjct: 377 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIE 435

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P+ +HY C+VDLLGRAG L +A + I SMP+ P V+ WGALL ACK H    +GE    +
Sbjct: 436 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 495

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L  L P + G +V LSN++AS   W  V  VR MM ++G+ K  G S IE NG +  F  
Sbjct: 496 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 555

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GDR+HP+  EI   LD + K+LK  GY P    V  D++ EE E TL  HSE+LA+A+G+
Sbjct: 556 GDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGI 615

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+ +P   +RI KNLR C +CH+A K IS+  DREI++RD  RFHHFK G CSC DFW
Sbjct: 616 ISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 225/497 (45%), Gaps = 74/497 (14%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            K   Q+  Q+I++GL    F    +IKF    L F +++Y+ K F  +  P+  ++N +
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFL---MIKFINACLHFGDVNYAHKAFREVSEPDILLWNAI 71

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           ++ Y Q+N+    I +Y  M  + V  + +T+  + +A         GK IH    K GF
Sbjct: 72  IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF 131

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
            S+V+V N+L++MYA  G +S AR +FD+     +VSW SI++GYV   +  EA  ++ +
Sbjct: 132 GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 191

Query: 223 MPERNI----IA--------SN---------------------------SMIVLFGRKGN 243
           M + N+    IA        +N                           S+  ++ ++G 
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 251

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           V  A   F  M K +L+ W+A+IS Y  N   EEA+ LF  MI   + VD + + S + A
Sbjct: 252 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 311

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
            A +  ++    +     K        +   LI MY+ CG I  A  +FD   + D++ W
Sbjct: 312 SAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLW 371

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           + MI GY                             G   H Q  E + L+ EM+  G+ 
Sbjct: 372 SVMIMGY-----------------------------GLHGHGQ--EAICLYNEMKQAGVC 400

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           P++ T + +++AC +   + +G  +   +  +G++ +    + ++D+  + G ++ A + 
Sbjct: 401 PNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDF 460

Query: 484 FHGTEEK-GVSSWNALI 499
                 K GVS W AL+
Sbjct: 461 IMSMPIKPGVSVWGALL 477



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 2/256 (0%)

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+  L  G V  A   F  + E D++ W+ +I GY Q +     + ++M+MQ   + P+ 
Sbjct: 41  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 100

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T + V+ AC        GK IH    K G   N  +  +L+ MY K G +  A  VF  
Sbjct: 101 FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 160

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             ++ V SW ++I G+  NG   ++L +F EM++  V P+ I  V V+ A  ++  + +G
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 220

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  + ++ +  LE        +  +  + G+++ A      M   P++  W A++    
Sbjct: 221 -KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYA 278

Query: 607 KHGDHEMGERVGRKLV 622
            +G  E   ++ R+++
Sbjct: 279 NNGYGEEAIKLFREMI 294



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           LDQ   ++  +  +GL     L    I+  +  G V+ A + F    E  +  WNA+I G
Sbjct: 18  LDQ---VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +    + D  + M+ +M+ S V PN  TF+ VL AC    +   G +  +    ++    
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG-KQIHGQTFKYGFGS 133

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           N      +V +  + G +  A  + + +     V +W +++    ++GD
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKL-HDRTVVSWTSIISGYVQNGD 181


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/671 (35%), Positives = 361/671 (53%), Gaps = 77/671 (11%)

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
           +D+  +  L    A   S  +   +H  ++K+ F S+ ++ N LI++Y  CG +  ARKL
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 189 FD-------------------------------ESPVLDLVSWNSILAGYVNADNVEEA- 216
           FD                               + P +D  SWNS+++G+      +EA 
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 217 --------------------------------------KFIYNKMPERNIIASNSMIVLF 238
                                                   +Y      ++   ++++ ++
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            + G V  A  +F EM  +  VSW++LI+CYEQN   +EAL +F+ MI   V  DEV + 
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 299 SVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
           SV+SACA ++ +K G  +HA  VK       + L NAL+ MY+ C  I  A  +FD    
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
             ++S  SM+SGY K   V+ AR +F  M+ KDV++W+ +I+G  Q+ +  E L LF  +
Sbjct: 317 RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLL 376

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI------NSILGTTLIDMY 471
           +   + P   T  ++++AC +L  L  G+  H+++ K+G +       +  +G +LIDMY
Sbjct: 377 KRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMY 436

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           MK G V+N   VF    EK   SWNA+I+G+A NG  +K+LE+F +M +SG  P+ +T +
Sbjct: 437 MKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMI 496

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GL+DEG  +F SM  +H L P   HY CMVDLLGRAG L+EA+ LIE M M
Sbjct: 497 GVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSM 556

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD   WG+LL ACK H + ++GE V +KL+E+ P++ G +VLLSN++A    W +V+ V
Sbjct: 557 QPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRV 616

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M +RGVVK PGCS IE  G ++ F+  D+ H +  EI  +L  + +++K  GY P  
Sbjct: 617 RKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYV 676

Query: 712 LEVAFDIDQEE 722
               FD D+E+
Sbjct: 677 GSNEFDEDEEQ 687



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 32/379 (8%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           + +D      +L+ CA     +  + VHA  +K        +QN LI +Y  CG +  A 
Sbjct: 15  LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVAR 74

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           KLFD     ++ SWNS+I  + K G ++ A  +F+ M + D  SW++MISG+ QH +F E
Sbjct: 75  KLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDE 134

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L  F +M  HG   +E +  S +SAC  L  L  G  IH+ + ++    +  +G+ L+D
Sbjct: 135 ALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVD 194

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           MY K G V+ A  VF     +   SWN+LI  +  NG  D++L++F EM K GV P+E+T
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT 254

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
              V+ AC  +  + EG +    +++      +      ++D+  +   + EA  + + M
Sbjct: 255 LASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMM 314

Query: 590 P------------------------------MSPDVATWGALLGACKKHGDHEMGERVGR 619
           P                              M  DV TW AL+  C ++G++E    + R
Sbjct: 315 PIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFR 374

Query: 620 --KLVELQPDHDGFHVLLS 636
             K   + P H  F  LL+
Sbjct: 375 LLKRESVWPTHYTFGNLLN 393



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 195/472 (41%), Gaps = 109/472 (23%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  +   +   +N+M+  + Q     +A+  +  M  +   V+ Y++     A A    
Sbjct: 107 IFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQD 166

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G  IH  V ++ + SDVY+ + L++MY+ CG +  A+ +FDE  V   VSWNS++  
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITC 226

Query: 207 YVNADNVEEAKFIYNKM------PERNIIAS----------------------------- 231
           Y     V+EA  I+ +M      P+   +AS                             
Sbjct: 227 YEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN 286

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMP------------------------------- 255
                N+++ ++ +   + EA  +F  MP                               
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMM 346

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            KD+++W+ALI+   QN   EEAL+LF  +    V        ++L+ACANL  ++ G  
Sbjct: 347 VKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQ 406

Query: 316 VHALAVKIGI------ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
            H+  +K G       +  + + N+LI MY  CG +    ++F      D +SWN+MI G
Sbjct: 407 AHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVG 466

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y + G   KA                               L +F +M   G  PD  T+
Sbjct: 467 YAQNGFGNKA-------------------------------LEVFCKMLESGEAPDHVTM 495

Query: 430 VSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           + V+ AC+H   LD+G+ +  +   ++GL       T ++D+  + G ++ A
Sbjct: 496 IGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEA 547



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 54/276 (19%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           KC    +   I   M +  ++++T   S   K S       ++  +  +F+ +   +   
Sbjct: 300 KCNRINEARIIFDMMPIRSVVSETSMVSGYAKAS-------KVKVARYMFSNMMVKDVIT 352

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++    Q    ++A+ L++L+   +V   +YT+  L  A A    +  G+  H HVL
Sbjct: 353 WNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVL 412

Query: 159 KAGF------DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           K GF      DSDV+V N+LI+MY  CG +    ++F      D VSWN+++ GY     
Sbjct: 413 KHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGF 472

Query: 213 VEEAKFIYNKMPE------------------------------RNIIASNS--------- 233
             +A  ++ KM E                              R++ A +          
Sbjct: 473 GNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYT 532

Query: 234 -MIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
            M+ L GR G + EA  L +EM  + D + W +L++
Sbjct: 533 CMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLA 568


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/617 (36%), Positives = 352/617 (57%), Gaps = 52/617 (8%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------- 226
           G +S A KLF + P  D+V WN+++ G+   D   E   +Y  M      P+        
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 227 ---------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                                      N+   N+++ ++   G +  A  +F    K+D+
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
            SW+ +IS Y + + YEE++ L + M  + V    V ++ VLSAC+ +        VH  
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             +   E  + L+NAL++ Y++CGE+  A ++F +    D+ISW S++ GY++ G+++ A
Sbjct: 262 VSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLA 321

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R  FD M  +D +SW+ MI GY +   F+E+L +F EMQ  G+ PDE T+VSV++AC HL
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            +L+ G+WI  YI KN +K + ++G  LIDMY K GC + A +VFH  +++   +W A++
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
           +G A NG   +++++F +M+   + P++IT++GVL AC H G+VD+  + F  M  +HR+
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRI 501

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           EP+  HYGCMVD+LGRAG++KEA E++  MPM+P+   WGALLGA + H D  M E   +
Sbjct: 502 EPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAK 561

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
           K++EL+PD+   + LL NI+A   RW D+ EVR  +V   + K PG S+IE NG  HEF+
Sbjct: 562 KILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFV 621

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
           AGD++H Q  EI   L+E+A++     Y PDT E+ F+   +E E     HS+       
Sbjct: 622 AGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGNKELE----EHSQ------- 670

Query: 740 LITISPPNPIRIMKNLR 756
            +T    NPI  +   R
Sbjct: 671 -VTTLRTNPIESINWFR 686



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 40/383 (10%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           L M+ I   +  D    +S+L  C      K    +H+ ++  G+      Q        
Sbjct: 21  LLMSTITESISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQ-------- 69

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                   +KLF        + W S + G+     V  A  LF  + E DVV W+ MI G
Sbjct: 70  --------KKLF--------VFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKG 108

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH-LVALDQGKWIHAYIRKNGLKI 459
           +++ D   E + L++ M   G+ PD  T   +++       AL  GK +H ++ K GL  
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  +   L+ MY   G +D A  VF    ++ V SWN +I G+      ++S+E+  EM+
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           ++ V+P  +T + VL AC  +   D   R  +  + E + EP+ +    +V+     G +
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKR-VHEYVSECKTEPSLRLENALVNAYAACGEM 287

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH-VLLSNI 638
             A  +  SM  + DV +W +++    + G+     ++ R   +  P  D     ++ + 
Sbjct: 288 DIAVRIFRSMK-ARDVISWTSIVKGYVERGNL----KLARTYFDQMPVRDRISWTIMIDG 342

Query: 639 HASKGRWDDVLEVRGMMVRRGVV 661
           +   G +++ LE+   M   G++
Sbjct: 343 YLRAGCFNESLEIFREMQSAGMI 365


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 343/606 (56%), Gaps = 37/606 (6%)

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           D  + N +L  Y +  +   A+ ++ ++P+RN+++ N +I  + + G++  A +LF EMP
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP 135

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +++ +W+A+++    + + EE+L  F  M    +  DE  + S+   CA L  V +G  
Sbjct: 136 ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQ 195

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           VHA  V+ G++  + + ++L HMY                               ++CG 
Sbjct: 196 VHAYVVRSGLDRDMCVGSSLAHMY-------------------------------MRCGF 224

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           +    A   A+   ++VS +T ISG  Q+      L  F  M+  G+  +  T VS +++
Sbjct: 225 LRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTS 284

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV---FHGTEEKGV 492
           C+ L AL QG+ IHA   K G+     + T+L+ MY + GC+ ++  V   + GT+   +
Sbjct: 285 CSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTD---L 341

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
              +A+I  +  +G   K++ +F +M  +G  PNE+TF+ +L AC H GL DEG   F  
Sbjct: 342 VLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFEL 401

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           M + + L+P+ KHY C+VDLLGR+G L EAE+LI SMP+ PD   W  LL ACK     +
Sbjct: 402 MTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFD 461

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
           M ER+  +++EL P     +VLLSNI A+  RW+DV +VR  M  + V K PG S +E  
Sbjct: 462 MAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELK 521

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G IH+F  GD +H +  EI   L+EM  +++  GYAPD   V  D++ EEKE +L  HSE
Sbjct: 522 GQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSE 581

Query: 733 KLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSC 792
           KLAIAF  +++    PIR+MKNLR+C+DCH A K +S+   REIVVRD  RFHHFK G C
Sbjct: 582 KLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKC 641

Query: 793 SCMDFW 798
           SC D+W
Sbjct: 642 SCGDYW 647



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/423 (19%), Positives = 162/423 (38%), Gaps = 69/423 (16%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFI----------------- 79
            + CQ+     Q+ +    +G  AD F A+ L+    DL  F                  
Sbjct: 52  FRACQALPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSW 111

Query: 80  -----------EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
                      ++  + K+F  + + N   +N M+       + ++++  +  M    + 
Sbjct: 112 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 171

Query: 129 VDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188
            D Y    L +  A    V  G+ +H +V+++G D D+ V ++L +MY  CG L      
Sbjct: 172 PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 189 FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----------------- 231
               P L++VS N+ ++G     + E A   +  M    + A+                 
Sbjct: 232 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 291

Query: 232 ----------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
                                  S++ ++ R G + ++ R+  E    DLV  SA+IS Y
Sbjct: 292 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 351

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECY 328
             +   ++A+ LF  M+      +EV  +++L AC++  +   G +   L  K  G++  
Sbjct: 352 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 411

Query: 329 INLQNALIHMYSSCGEITTAEKL-FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
           +     ++ +    G +  AE L        D + W +++S        + A  + + +I
Sbjct: 412 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 471

Query: 388 EKD 390
           E D
Sbjct: 472 ELD 474


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/658 (36%), Positives = 359/658 (54%), Gaps = 71/658 (10%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------- 224
           GD++ A K F E    D++ WN+I+ GY   + V+    +Y  M                
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 225 ------------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                     N+   NS++ ++ + G ++ A  +F ++  + +V
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+++IS Y QN    EAL +F  M    V  D + +VSV++A  N+  +  G S+H L 
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 212

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            K+G+E   ++  +L  MY+                               K G VE AR
Sbjct: 213 TKLGLEFEPDIVISLTTMYA-------------------------------KRGLVEVAR 241

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
             F+ M + +++ W+ MISGYA +    E + LF EM    IR D  T+ S + A   + 
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 301

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +L+  +W+  YI K+  + ++ + T LIDMY K G +  A  VF    +K V  W+ +I+
Sbjct: 302 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 361

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+ ++G   +++ +++EMK++GV PN+ TF+G+L AC++ GLV EG   F+ ++ +H +E
Sbjct: 362 GYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIE 420

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P+ +HY C+VDLLGRAG L +A + I SMP+ P V+ WGALL ACK H    +GE    +
Sbjct: 421 PHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQ 480

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           L  L P + G +V LSN++AS   W  V  VR MM ++G+ K  G S IE NG +  F  
Sbjct: 481 LFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQV 540

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           GDR+HP+  EI   LD + K+LK  GY P    V  D++ EE E TL  HSE+LA+A+G+
Sbjct: 541 GDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGI 600

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I+ +P   +RI KNLR C +CH+A K IS+  DREI++RD  RFHHFK G CSC DFW
Sbjct: 601 ISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 225/496 (45%), Gaps = 74/496 (14%)

Query: 44  KQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMM 103
           K   Q+  Q+I++GL    F    +IKF    L F +++Y+ K F  +  P+  ++N ++
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFL---MIKFINACLHFGDVNYAHKAFREVSEPDILLWNAII 57

Query: 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFD 163
           + Y Q+N+    I +Y  M  + V  + +T+  + +A         GK IH    K GF 
Sbjct: 58  KGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFG 117

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           S+V+V N+L++MYA  G +S AR +FD+     +VSW SI++GYV   +  EA  ++ +M
Sbjct: 118 SNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM 177

Query: 224 PERNI----IA--------SN---------------------------SMIVLFGRKGNV 244
            + N+    IA        +N                           S+  ++ ++G V
Sbjct: 178 RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLV 237

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             A   F  M K +L+ W+A+IS Y  N   EEA+ LF  MI   + VD + + S + A 
Sbjct: 238 EVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLAS 297

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A +  ++    +     K        +   LI MY+ CG I  A  +FD   + D++ W+
Sbjct: 298 AQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWS 357

Query: 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP 424
            MI GY                             G   H Q  E + L+ EM+  G+ P
Sbjct: 358 VMIMGY-----------------------------GLHGHGQ--EAICLYNEMKQAGVCP 386

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           ++ T + +++AC +   + +G  +   +  +G++ +    + ++D+  + G ++ A +  
Sbjct: 387 NDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFI 446

Query: 485 HGTEEK-GVSSWNALI 499
                K GVS W AL+
Sbjct: 447 MSMPIKPGVSVWGALL 462



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 2/257 (0%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
            I+  L  G V  A   F  + E D++ W+ +I GY Q +     + ++M+MQ   + P+
Sbjct: 25  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 84

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             T + V+ AC        GK IH    K G   N  +  +L+ MY K G +  A  VF 
Sbjct: 85  CFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD 144

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
              ++ V SW ++I G+  NG   ++L +F EM++  V P+ I  V V+ A  ++  + +
Sbjct: 145 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 204

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G +  + ++ +  LE        +  +  + G+++ A      M   P++  W A++   
Sbjct: 205 G-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGY 262

Query: 606 KKHGDHEMGERVGRKLV 622
             +G  E   ++ R+++
Sbjct: 263 ANNGYGEEAIKLFREMI 279



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           LDQ   ++  +  +GL     L    I+  +  G V+ A + F    E  +  WNA+I G
Sbjct: 3   LDQ---VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 59

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +    + D  + M+ +M+ S V PN  TF+ VL AC    +   G +  +    ++    
Sbjct: 60  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG-KQIHGQTFKYGFGS 118

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           N      +V +  + G +  A  + + +     V +W +++    ++GD
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKL-HDRTVVSWTSIISGYVQNGD 166


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 388/718 (54%), Gaps = 46/718 (6%)

Query: 81   MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
            M+++ K+F  +   N   +  ++  + +    +    L++ M       + YT   + + 
Sbjct: 340  MAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKC 399

Query: 141  SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
             +L  ++  GK +H  +L+ G D DV + N+++++Y  C       K+F           
Sbjct: 400  CSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKC-------KVF----------- 441

Query: 201  NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                         E A+ ++  M E ++++ N MI  + R G+V ++  +F+ +P KD+V
Sbjct: 442  -------------EYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVV 488

Query: 261  SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
            SW+ ++    Q      AL     M++       V     L   ++L+ V+ G  +H + 
Sbjct: 489  SWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMV 548

Query: 321  VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            +K G +    ++++L+ MY  CG +  A  +      L  +  + +  G  +    E   
Sbjct: 549  LKFGFDSDGFIRSSLVEMYCKCGRMDKASII------LRDVPLDVLRKGNARVSYKEP-- 600

Query: 381  ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                   +  +VSW +M+SGY  + ++ + L  F  M    +  D  T+ ++ISAC +  
Sbjct: 601  -------KAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 441  ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
             L+ G+ +HAY++K G +I++ +G++LIDMY K G +D+A  VF  + E  +  W ++I 
Sbjct: 654  ILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMIS 713

Query: 501  GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
            G+A++G    ++ +F EM   G+ PNE+TF+GVL AC H GL++EG R+F  M   + + 
Sbjct: 714  GYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCIN 773

Query: 561  PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
            P  +H   MVDL GRAG L + +  I    +S   + W + L +C+ H + EMG+ V   
Sbjct: 774  PGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEM 833

Query: 621  LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
            L+++ P   G +VLLSN+ AS  RWD+   VR +M +RGV K PG S I+    IH F+ 
Sbjct: 834  LLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVM 893

Query: 681  GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            GDR+HPQ +EI + LD +  +LK  GY+ D   V  D+++E+ E  +  HSEKLA+ FG+
Sbjct: 894  GDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGI 953

Query: 741  ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            I  +   PIRI+KNLRIC DCH   K+ S+  DREI+VRD HRFHHFKHGSCSC D+W
Sbjct: 954  INTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 196/404 (48%), Gaps = 24/404 (5%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +N ++ L+ +  N+A A +LF E+P+++  +W+ LIS + +    E    LF  M     
Sbjct: 327 ANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGA 386

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             ++  + SVL  C+    ++ G  VHA  ++ GI+  + L N+++ +Y  C     AE+
Sbjct: 387 CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           LF+  +  D++SWN MI  YL+ G VEK+  +F  +  KDVVSW+T++ G  Q       
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHA 506

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L     M   G      T    +   + L  ++ G+ +H  + K G   +  + ++L++M
Sbjct: 507 LEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEM 566

Query: 471 YMKLGCVDNA----------------LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           Y K G +D A                  V +   + G+ SW +++ G+  NG  +  L+ 
Sbjct: 567 YCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKT 626

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE--HRLEPNSKHYGCMVDL 572
           F  M +  V  +  T   ++ AC + G+++ G RH ++ +Q+  HR++        ++D+
Sbjct: 627 FRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQKIGHRIDAYVG--SSLIDM 683

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD--HEMG 614
             ++G L +A  ++      P++  W +++     HG   H +G
Sbjct: 684 YSKSGSLDDA-WMVFRQSNEPNIVMWTSMISGYALHGQGMHAIG 726



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 78/355 (21%)

Query: 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG 374
           ++HAL VK G    +N  N L+ +Y+    +  A+KLFD     +  +W  +ISG+ + G
Sbjct: 310 TLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAG 369

Query: 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
           S E                                  +LF EMQ  G  P++ TL SV+ 
Sbjct: 370 SSEM-------------------------------VFNLFREMQAKGACPNQYTLSSVLK 398

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
            C+    L  GK +HA++ +NG+ ++ +LG +++D+Y+K    + A  +F    E  V S
Sbjct: 399 CCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVS 458

Query: 495 WNALIIGFAMNGLADKSLEMFSE-------------------------------MKKSGV 523
           WN +I  +   G  +KSL+MF                                 M + G 
Sbjct: 459 WNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGT 518

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             + +TF   L     +  V+ G R  + M+ +   + +      +V++  + G + +A 
Sbjct: 519 EFSAVTFSIALILASSLSHVELG-RQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKAS 577

Query: 584 ELIESMPM---------------SPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
            ++  +P+                  + +WG+++     +G +E G +  R +V 
Sbjct: 578 IILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVR 632


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/461 (44%), Positives = 300/461 (65%), Gaps = 6/461 (1%)

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           K G   +  + N+L+ +Y S G I  A + L+  G  LD++SWN+M+SGY K G +  AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +F  M E+++VSWS M+    +  +F E L +F  M     RPD   LVSV+ AC HL 
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 441 ALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
           A+++G+W+H Y+      G + N +L T L+DMY K GC+++A +VF G   + V  WNA
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNA 285

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G AMNG  +++LE+F  M + G  PNE TF+ VL AC H G VDEG R F SM Q++
Sbjct: 286 MIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDY 344

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
            ++P  +HYGC+ DLLGRAG ++EAE L+  MPM P  + WGAL+ +C+ H D  +GERV
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERV 404

Query: 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHE 677
           G++L+EL+P   G +V+L N++A  GRW++   +R MM  RG  K  G S IE NG++HE
Sbjct: 405 GKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHE 464

Query: 678 FLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAI 736
           F++GD  HP   +I  +L+++ ++L+L GY  DT +V  D+D EE K   L  HSE+LA+
Sbjct: 465 FISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLAL 524

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIV 777
           AFG++ I    PIRI+KNLR+C DCH  +K +S+ ++REI+
Sbjct: 525 AFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREII 565



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 155/347 (44%), Gaps = 67/347 (19%)

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARK-LFDESPVLDLVSWNSILAGYVNADNVEEA 216
            K G  +   V N+L+ +Y   G +  AR+ L+     LD+VSWN++++G          
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSG---------- 154

Query: 217 KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                                +G+ G++  A  +F  MP+++LVSWSA++    +   + 
Sbjct: 155 ---------------------YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFG 193

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL---AVKIGIECYINLQN 333
           EAL +F  M+      D VV+VSVL ACA+L  V+ G  VH         G    + L+ 
Sbjct: 194 EALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLET 253

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           AL+ MY  CG +  A ++FD  H  D++ WN+MI G    G  E+A  LF  M++K    
Sbjct: 254 ALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQK---- 309

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
                                      G  P+E+T ++V+ ACTH   +D+GK +   ++
Sbjct: 310 ---------------------------GFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ 342

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
             G+K        L D+  + G V+ A  +      E   S W AL+
Sbjct: 343 DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALM 389



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 46/312 (14%)

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFI 219
            G   DV   NT+++ Y   GDL AAR++F   P  +LVSW++++   V A    EA ++
Sbjct: 139 GGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWV 198

Query: 220 YNKM------P------------------ER------------------NIIASNSMIVL 237
           +++M      P                  ER                  N++   +++ +
Sbjct: 199 FDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDM 258

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + G + +A ++F  + ++D+V W+A+I     N   E AL LF  M+    M +E   
Sbjct: 259 YCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTF 318

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK-LFDAGH 356
           ++VL AC +   V  G  V       GI+        L  +    G +  AE  L D   
Sbjct: 319 IAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPM 378

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSL 413
                 W +++S       +     +   +IE    D   +  + + YA + ++ E  ++
Sbjct: 379 EPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTI 438

Query: 414 FMEMQHHGIRPD 425
              M+  G + +
Sbjct: 439 RQMMEDRGAKKE 450



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 13/222 (5%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + ++FA +   N   ++ M+ A ++     +A+ ++  M+      D      + +
Sbjct: 160 DLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLK 219

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDS---DVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
           A A   +V  G+ +H ++    F     ++ +   L++MY  CG +  A ++FD     D
Sbjct: 220 ACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRD 279

Query: 197 LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF----GRKGNVAEACRLFK 252
           +V WN+++ G       E A  ++ +M ++  + + S  +         G V E  R+FK
Sbjct: 280 VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFK 339

Query: 253 EM------PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
            M      P+++     A +     N    EAL+L M M  H
Sbjct: 340 SMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPH 381


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/502 (41%), Positives = 312/502 (62%), Gaps = 3/502 (0%)

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD---LVSWSALISCYEQNEMYEEALVL 281
           E N   ++S+++++  +G+ A A  L    P +     V W+ALIS + ++  +  +   
Sbjct: 51  ELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCS 110

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F++M+   V+   V  ++VLSAC     +  G  VH   V  G+   + + NALI MY+ 
Sbjct: 111 FVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAE 170

Query: 342 CGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGY 401
           C E+  A +LF+     + +SW S+ISG+L+ G V++AR LFD M E+D VSW+ MI GY
Sbjct: 171 CSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230

Query: 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461
            Q  QF E L +F EMQ   +R DE T+VSV++AC  L AL+ G+W   Y+ ++G+K+++
Sbjct: 231 VQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDT 290

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
            +G  L+DMY K G +  AL VF     +   +W A+I+G A+NG  ++++ MF  M + 
Sbjct: 291 FVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRV 350

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
              P+E+TF+GVL AC H GLVD+G   F SM   + + PN  H+GC++DLLGRAG LKE
Sbjct: 351 FEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKE 410

Query: 582 AEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641
           A E I +MPM P+ A WG LL AC+ HG+ E+G+     L+EL  ++   ++LLSN++A 
Sbjct: 411 ALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAK 470

Query: 642 KGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKK 701
             RW+DV  +R +++ +G+ K PGCS+IE NG IHEF+AGDR+HP   EI + LD++   
Sbjct: 471 SNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTD 530

Query: 702 LKLEGYAPDTLEVAFDIDQEEK 723
           LK  GY PD  E+   + +EEK
Sbjct: 531 LKDAGYVPDLTEIFVQVTREEK 552



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 181/411 (44%), Gaps = 64/411 (15%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++N ++  + +    + + C +  M+   V     TY  +  A      ++ G  +H  V
Sbjct: 90  VWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCV 149

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           + +G   D+ V N LI+MYA C ++ AA +LF+   V + VSW S+++G           
Sbjct: 150 VASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISG----------- 198

Query: 218 FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                               F R G V +A  LF  MP++D VSW+A+I  Y Q   + E
Sbjct: 199 --------------------FLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL +F  M   +V  DE  +VSV++ACA L  ++ G        + GI+    + NAL+ 
Sbjct: 239 ALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVD 298

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS CG I  A  +F   +  D  +W ++I G                            
Sbjct: 299 MYSKCGSIQQALGVFKEMYIRDKFTWTAVILGL--------------------------A 332

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNG 456
           ++G+ +     E +++F  M      PDE T + V++ACTH   +D+G+ +  +     G
Sbjct: 333 VNGHGE-----EAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYG 387

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG 506
           +  N +    LID+  + G +  ALE       +  S+ W  L+    ++G
Sbjct: 388 IAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHG 438



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 160/369 (43%), Gaps = 67/369 (18%)

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G +VHA  VK G+E   ++ ++L+ MY++ G+   A  L DA        W +      +
Sbjct: 38  GDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDA--------WPA------R 83

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
            G                 V W+ +ISG+ +  QF  +   F++M   G+ P   T ++V
Sbjct: 84  GGDTP--------------VVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITV 129

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY--------------------- 471
           +SAC     +  G  +H  +  +G+  +  +G  LIDMY                     
Sbjct: 130 LSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNT 189

Query: 472 ----------MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
                     ++LG VD A  +F    E+   SW A+I G+   G   ++LEMF EM+ S
Sbjct: 190 VSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFS 249

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
            V  +E T V V+ AC  +G ++ G      M   H ++ ++     +VD+  + G +++
Sbjct: 250 KVRADEFTMVSVVTACAQLGALETGEWARIYM-SRHGIKMDTFVGNALVDMYSKCGSIQQ 308

Query: 582 AEELIESMPMSPDVATWGA-LLG-ACKKHGDHEMGERVGRKLVELQPDHDGF-HVLLSNI 638
           A  + + M +  D  TW A +LG A   HG+  +        V   PD   F  VL +  
Sbjct: 309 ALGVFKEMYIR-DKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACT 367

Query: 639 HAS---KGR 644
           HA    KGR
Sbjct: 368 HAGLVDKGR 376


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/804 (31%), Positives = 416/804 (51%), Gaps = 76/804 (9%)

Query: 27  TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
           +++L I    L K +S  +  QI+ Q++ +GL +     + LI     L     + Y+  
Sbjct: 145 SMSLVISSCGLLKDESLGR--QIIGQVVKSGLESKLAVENSLISM---LGSMGNVDYANY 199

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  +   +   +N++  AY Q    +++  ++ LM   +  V++ T   L         
Sbjct: 200 IFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDH 259

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ IH  V+K GFDS V V NTL+ MYA  G    A  +F + P  DL+SWNS++A 
Sbjct: 260 QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMAS 319

Query: 207 YVN-----------------------------------ADNVEEAKFIYNKMPER----N 227
           +VN                                    D  E+ + ++  +       N
Sbjct: 320 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYN 379

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
            I  N+++ ++G+ G ++E+ R+  +MP++D+V+W+ALI  Y ++E  ++AL  F  M  
Sbjct: 380 QIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRV 439

Query: 288 HRVMVDEVVVVSVLSACA-NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
             V  + + VVSVLSAC     +++ G  +HA  V  G E   +++N+LI MY+      
Sbjct: 440 EGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA------ 493

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG +  ++ LF+ +  +++++W+ M++  A H  
Sbjct: 494 -------------------------KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGH 528

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L L  +M+  G+  D+ +    +SA   L  L++G+ +H    K G + +S +   
Sbjct: 529 GEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNA 588

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
             DMY K G +   +++   +  + + SWN LI     +G  ++    F EM + G+ P 
Sbjct: 589 AADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPG 648

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TFV +L AC H GLVD+G  +++ + ++  LEP  +H  C++DLLGR+G L EAE  I
Sbjct: 649 HVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFI 708

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             MPM P+   W +LL +CK HG+ + G +    L +L+P+ D  +VL SN+ A+ GRW+
Sbjct: 709 SKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWE 768

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           DV  VR  M  + + K   CS ++    +  F  GDRTHPQ  EI   L+++ K +K  G
Sbjct: 769 DVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESG 828

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  DT +   D D+E+KE  L+ HSE+LA+A+ L++    + +RI KNLRIC+DCH+  K
Sbjct: 829 YVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYK 888

Query: 767 FISRAFDREIVVRDRHRFHHFKHG 790
           F+SR   R IV+RD++RFHHF+ G
Sbjct: 889 FVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 157/640 (24%), Positives = 302/640 (47%), Gaps = 86/640 (13%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
           F++  Q+   +  +GL++D + ++ ++        +  +S S K+F  +   N   + ++
Sbjct: 58  FREGVQVHGFVAKSGLLSDVYVSTAILHLYG---VYGLVSCSRKVFEEMPDRNVVSWTSL 114

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           M  Y  +  P++ I +YK M    VG +  +  L+  +  L      G+ I   V+K+G 
Sbjct: 115 MVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGL 174

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
           +S + V N+LI+M    G++  A  +FD+    D +SWNSI A Y    ++EE+  I++ 
Sbjct: 175 ESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSL 234

Query: 223 M----PERN-----------------------------------IIASNSMIVLFGRKGN 243
           M     E N                                   +   N+++ ++   G 
Sbjct: 235 MRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 294

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
             EA  +FK+MP KDL+SW++L++ +  +    +AL L  +MI     V+ V   S L+A
Sbjct: 295 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAA 354

Query: 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISW 363
           C      + G  +H L V  G+     + NAL+ MY   GE++ + ++       D+++W
Sbjct: 355 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 414

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N++I G                               YA+ +   + L+ F  M+  G+ 
Sbjct: 415 NALIGG-------------------------------YAEDEDPDKALAAFQTMRVEGVS 443

Query: 424 PDEATLVSVISACTHLVA---LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            +  T+VSV+SAC  L+    L++GK +HAYI   G + +  +  +LI MY K G + ++
Sbjct: 444 SNYITVVSVLSAC--LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSS 501

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            ++F+G + + + +WNA++   A +G  ++ L++ S+M+  GV+ ++ +F   L A   +
Sbjct: 502 QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKL 561

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATW 598
            +++EG +  + +  +   E +S  +    D+  + G   E  E+++ +P S +  + +W
Sbjct: 562 AVLEEG-QQLHGLAVKLGFEHDSFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSW 617

Query: 599 GALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
             L+ A  +HG  E       +++E+  +P H  F  LL+
Sbjct: 618 NILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLT 657



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 193/458 (42%), Gaps = 73/458 (15%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS--------------- 231
           PV + VSWN++++G V      E    + KM      P   +IAS               
Sbjct: 2   PVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREG 61

Query: 232 -------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                               +++ L+G  G V+ + ++F+EMP +++VSW++L+  Y   
Sbjct: 62  VQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDK 121

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
              EE + ++  M    V  +E  +  V+S+C  L     G  +    VK G+E  + ++
Sbjct: 122 GEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 181

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           N+LI M  S G +  A  +FD     D ISWNS+ + Y + G +E++  +F  M      
Sbjct: 182 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRF--- 238

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
                      HD+ + T                 T+ +++S   H+     G+ IH  +
Sbjct: 239 -----------HDEVNST-----------------TVSTLLSVLGHVDHQKWGRGIHGLV 270

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K G      +  TL+ MY   G    A  VF     K + SWN+L+  F  +G +  +L
Sbjct: 271 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 330

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
            +   M  SG + N +TF   L AC      ++G R  + ++    L  N      +V +
Sbjct: 331 GLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSM 389

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            G+ G + E+  ++  MP   DV  W AL+G   +  D
Sbjct: 390 YGKIGEMSESRRVLLQMPRR-DVVAWNALIGGYAEDED 426



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 166/356 (46%), Gaps = 42/356 (11%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA-NLTVVKA 312
           MP ++ VSW+ ++S   +  +Y E +  F  M D  +     V+ S+++AC  + ++ + 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK 372
           G  VH    K G+   + +  A++H+Y                           + G + 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYG--------------------------VYGLVS 94

Query: 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432
           C     +R +F+ M +++VVSW++++ GY+   +  E + ++  M+  G+  +E ++  V
Sbjct: 95  C-----SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV 149

Query: 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           IS+C  L     G+ I   + K+GL+    +  +LI M   +G VD A  +F    E+  
Sbjct: 150 ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDT 209

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
            SWN++   +A NG  ++S  +FS M++     N  T   +L     +G VD  H+ +  
Sbjct: 210 ISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV---LGHVD--HQKWGR 264

Query: 553 MIQEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESMPMSPDVATWGALLGA 604
            I    ++       C+ + L R    AG   EA  + + MP + D+ +W +L+ +
Sbjct: 265 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP-TKDLISWNSLMAS 319



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 386 MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVAL-DQ 444
           M  ++ VSW+TM+SG  +   + E +  F +M   GI+P    + S+++AC    ++  +
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G  +H ++ K+GL  +  + T ++ +Y   G V  + +VF    ++ V SW +L++G++ 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV-DEG-HRHFNSMIQEHRLEPN 562
            G  ++ ++++  M+  GV  NE +   V+ +C   GL+ DE   R     + +  LE  
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESLGRQIIGQVVKSGLESK 177

Query: 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
                 ++ +LG  G +  A  + + M    D  +W ++  A  ++G  E   R+
Sbjct: 178 LAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIEESFRI 231


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 339/634 (53%), Gaps = 62/634 (9%)

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
           D +  N L+  YA  GDL  AR LF+     +++SWN ++ G +   ++  A+ +++KMP
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
            RN+                                +W+A+++      + E++L  F+ 
Sbjct: 136 TRNV-------------------------------ATWNAMVAGLTNVGLDEDSLQFFLA 164

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    +  DE  + SV   CA L  V +G  VHA  V+ G++  + + N+L HMY  CG 
Sbjct: 165 MRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGC 224

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +   E +  A  +L ++S+N+ I+G  + G  E A                         
Sbjct: 225 LAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGA------------------------- 259

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464
                 L  F  M+   + PD  T VS IS C+ L AL QG+ +HA + K G+     + 
Sbjct: 260 ------LEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVI 313

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           T+L+ MY + GC+ ++  V+ G     +   +A+I     +G   K++E+F +M   G  
Sbjct: 314 TSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE 373

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
           PNE+TF+ +L AC H GL DEG   F  M + +  +P+ KHY C+VDLLGR+G L EAE 
Sbjct: 374 PNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEA 433

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LI SMP+  D   W  LL ACK   + +M ER+  +++E  P     +VLLSNI A+  R
Sbjct: 434 LILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKR 493

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W DV EVR +M  + + K PG S +E  G +H+F  GD++HP+  EID  L EM  K++ 
Sbjct: 494 WGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQ 553

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
            GYAPD   V  D++ EEKE +L  HSEKLAIAF  + +    PIR+MKNLR+C+DCH A
Sbjct: 554 CGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVA 613

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K IS+   REIVVRD  RFHHF+ G CSC D+W
Sbjct: 614 IKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 94/402 (23%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++  + ++F  + + N   +N M+       + + ++  +  M    +  D +    + +
Sbjct: 123 DLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFR 182

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A  L V  G+ +H +V+++G DSD+ V N+L +MY  CG L+    +    P L +VS
Sbjct: 183 CCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVS 242

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           +N+ +AG     + E A   ++ M                R   VA            D+
Sbjct: 243 FNTTIAGRTQNGDSEGALEYFSMM----------------RGVEVA-----------PDV 275

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           V++ + ISC                                   C++L  +  G  VHA 
Sbjct: 276 VTFVSAISC-----------------------------------CSDLAALAQGQQVHAQ 300

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
            +K G++  + +  +L+HMYS CG +  +E+++D    LDL   ++MIS    CG     
Sbjct: 301 VIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISA---CGF---- 353

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
                                   H Q  + + LF +M + G  P+E T ++++ AC+H 
Sbjct: 354 ------------------------HGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHS 389

Query: 440 VALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
              D+G ++     +  G + +      ++D+  + GC+D A
Sbjct: 390 GLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEA 431



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 12/215 (5%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           FNT +    Q    + A+  + +M    V  D  T+       +   ++ +G+ +H  V+
Sbjct: 243 FNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVI 302

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA--GYVNADN--VE 214
           KAG D  V V  +L++MY+ CG L  + +++D    LDL   +++++  G+    +  VE
Sbjct: 303 KAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVE 362

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK-----KDLVSWSALISCY 269
             K + N   E N +   +++      G   E    F+ M K       +  ++ ++   
Sbjct: 363 LFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLL 422

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
            ++   +EA  L ++M    V  D V+  ++LSAC
Sbjct: 423 GRSGCLDEAEALILSM---PVRADGVIWKTLLSAC 454


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/668 (34%), Positives = 356/668 (53%), Gaps = 72/668 (10%)

Query: 171 TLINMYAVCGDLSAARKLFDESPVLD--LVSWNSILAGYVNADNVEEAKFIYNKMPE--- 225
           +L   YA  G L AA      SP     + +WN++LA    A +   A  ++  +P    
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSAR 108

Query: 226 -----------------------------------RNIIASNSMIVLFGRKGNVAEACRL 250
                                              R++   ++++ ++ R G + +A R+
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRV 168

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F  MP+KD V+WS +++ +       EAL ++  M +H V  DEVV+V V+ AC      
Sbjct: 169 FDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNT 228

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           + G SVH                                +    G  +D++   S++  Y
Sbjct: 229 RMGASVHG-------------------------------RFLRHGMRMDVVIATSLVDMY 257

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430
            K G  + AR +F  M  ++ VSW+ +ISG+AQ+    E L LF EM   G++PD   LV
Sbjct: 258 AKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALV 317

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           S + AC  +  L  GK IH +I +  L+   ILGT ++DMY K G +++A ++F+    +
Sbjct: 318 SALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSR 376

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            +  WNA+I     +G    +L +F E+ ++G+ P+  TF  +L A  H GLV+EG   F
Sbjct: 377 DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWF 436

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           + MI E  +EP  KH  C+VDLL R+G+++EA E++ SM   P +  W ALL  C  +  
Sbjct: 437 DRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKK 496

Query: 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIE 670
            E+GE + +K++E QP+  G   L+SN++A+  +WD V E+R +M   G  K+PG S+IE
Sbjct: 497 LELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIE 556

Query: 671 ANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730
            +G  H F+  D++HPQ  EI  M+ +++ +++  GY P T  V  D+D++ KE  L  H
Sbjct: 557 VHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYH 616

Query: 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHG 790
           SE+LAIAFGL+  SP   + I+KNLR+C DCH A K+IS+  DREIVVRD  RFHHFK G
Sbjct: 617 SERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDG 676

Query: 791 SCSCMDFW 798
           +CSC D+W
Sbjct: 677 ACSCGDYW 684



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 225/478 (47%), Gaps = 79/478 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N ++ A  +   P  A+ +++  L ++   D+ T+ L   A A    +   + +     
Sbjct: 80  WNALLAARSRAGSPGAALRVFR-ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
            AG+  DV+V + L+++Y+ CG +  A ++FD  P  D V+W++++AG+V+A    EA  
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 219 IYNKMPER---------------------------------------NIIASNSMIVLFG 239
           +Y++M E                                        +++ + S++ ++ 
Sbjct: 199 MYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYA 258

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G+   A ++F+ MP ++ VSW+ALIS + QN   +EAL LF  M    +  D   +VS
Sbjct: 259 KNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
            L ACA++  +K G S+H   ++  +E    L  A++ MYS CG + +A KLF+   + D
Sbjct: 319 ALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRD 377

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L+ WN+MI+    CG+                            H    + L+LF E+  
Sbjct: 378 LVLWNAMIAC---CGT----------------------------HGCGHDALALFQELNE 406

Query: 420 HGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
            GI+PD AT  S++SA +H   +++GK W    I + G++        ++D+  + G V+
Sbjct: 407 TGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVE 466

Query: 479 NALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            A E+      E  +  W AL+ G     L +K LE+   + K  +  ++   +GVL 
Sbjct: 467 EANEMLASMHTEPTIPIWVALLSGC----LNNKKLELGETIAKK-ILESQPEDIGVLA 519



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 150/348 (43%), Gaps = 40/348 (11%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  +   +   ++TM+  ++    P +A+ +Y  M  + V  D      + QA
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
             L  +   G  +H   L+ G   DV +  +L++MYA  G    AR++F   P  + VSW
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSW 281

Query: 201 NSILAGYVNADNVEEAKFIYNKMP------------------------------------ 224
           N++++G+    + +EA  ++ +M                                     
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR 341

Query: 225 --ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
             E   I   +++ ++ + G++  A +LF ++  +DLV W+A+I+C   +    +AL LF
Sbjct: 342 RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALF 401

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSS 341
             + +  +  D     S+LSA ++  +V+ G      +  + GIE        ++ + + 
Sbjct: 402 QELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLAR 461

Query: 342 CGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKARALFDAMIE 388
            G +  A ++  + H    I  W +++SG L    +E    +   ++E
Sbjct: 462 SGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILE 509


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/738 (32%), Positives = 380/738 (51%), Gaps = 72/738 (9%)

Query: 99   FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
            +NTM+ A   R    + +  +  ML   +  +  ++  +  A +   ++  G+ IH  +L
Sbjct: 405  WNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLIL 464

Query: 159  KAGFDS-DVYVNNTLINMYAVCGDLSAARKLFDESPV--LDLVSWNSILAGYVNADNVEE 215
                D  +  V   L++MY  CG ++ A  +F E P+    LV+WN +L  Y   D  +E
Sbjct: 465  TRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKE 524

Query: 216  AKFIYNKMPE-----------------------------------RNIIASNSMIVLFGR 240
            A     +M +                                   R+     ++I + GR
Sbjct: 525  AFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGR 584

Query: 241  KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
               + +A  +F EM   D+VSW+A++S   +N  ++E   LF  M    V+ D+  + + 
Sbjct: 585  CRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATT 644

Query: 301  LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
            L  C + T +  G  +HA   +IG+E  I ++NAL++MYS+                   
Sbjct: 645  LDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSN------------------- 685

Query: 361  ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        CG   +A + F+ M  +D+VSW+ M + YAQ     E + LF  MQ  
Sbjct: 686  ------------CGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLE 733

Query: 421  GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            G++PD+ T  + ++       +  GK  H    ++GL  +  + T L+ +Y K G +D A
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEA 793

Query: 481  LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            + +F G  +  V   NA+I   A +G ++++++MF +M++ GV P+  T V ++ AC H 
Sbjct: 794  ISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHA 853

Query: 541  GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            G+V+EG   F +M +   + P  +HY C VDLLGRAG L+ AE++I  MP   +   W +
Sbjct: 854  GMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTS 913

Query: 601  LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
            LLG CK  GD E+GER  ++++EL P +   HV+LSNI+ + G+W D    R  ++ + V
Sbjct: 914  LLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNV 973

Query: 661  VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
               PG S +E    +HEF+AGDR+HPQ +EI  +LD++   ++  GY  D      D + 
Sbjct: 974  KNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEADK---GLDAED 1030

Query: 721  EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
            E KE  L  HSE++AIAFGLI   P   ++I+KNLR+C DCHTA K+IS    REI+VRD
Sbjct: 1031 ELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRD 1090

Query: 781  RHRFHHFKHGSCSCMDFW 798
              RFHHF +G+CSC D W
Sbjct: 1091 SLRFHHFSNGTCSCKDCW 1108



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 167/692 (24%), Positives = 296/692 (42%), Gaps = 109/692 (15%)

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
           ++R +  + +C     +  +   D   Y  L Q+      + +GK  H+ +  AG +  +
Sbjct: 1   MKRGLIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHL 60

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--- 223
           ++ N LINMY  CG L  A  +F +    ++VSW ++++    +     A  ++  M   
Sbjct: 61  FLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLE 120

Query: 224 ----PE--------------------RNI-----------------IASNSMIVLFGRKG 242
               P                     R+I                 +  N+MI ++ + G
Sbjct: 121 SSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCG 180

Query: 243 NVAEACRLFKEMPKKDLVSWSALISCYEQ-NEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           +  +A  +F  +P+KD+VSW+A+   Y Q    Y +AL +F  M+   +  + +  ++ L
Sbjct: 181 SPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---GHNL 358
            AC +L   + GT +H+L  + G+       NALI+MY  CG+   A  +F A      L
Sbjct: 241 GACTSL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQEL 297

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           DL+SWN+MIS      SVE  R                            + +++F  ++
Sbjct: 298 DLVSWNAMIS-----ASVEAGR--------------------------HGDAMAIFRRLR 326

Query: 419 HHGIRPDEATLVSVISA-CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
             G+RP+  TL+++++A     V     +  H  I ++G   + ++G  +I MY K G  
Sbjct: 327 LEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFF 386

Query: 478 DNALEVFHGTEEK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
             A  VF     K  V SWN ++          K +  F  M  +G+ PN+++F+ +L A
Sbjct: 387 SAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNA 446

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SPDV 595
           C +   +D G +  + ++   R    S     +V + G+ G + EAE + + MP+ S  +
Sbjct: 447 CSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSL 506

Query: 596 ATWGALLGACKKHGDHEMGERVGRKLVELQ----PDHDGFHVLLSNIHASKGRWDDVLEV 651
            TW  +LGA  ++   +  E  G  +  LQ    PD   F  +LS+ + S+     VL +
Sbjct: 507 VTWNVMLGAYAQNDRSK--EAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEA--QVLRM 562

Query: 652 -------RGMMVRRGVVKIPG-CSMIE-ANGIIHEFLAGD-------RTHPQINEIDNML 695
                  R   +   ++ + G C  +E A  +  E   GD        +    N     +
Sbjct: 563 CILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
             + ++++LEG  PD   +A  +D     TTL
Sbjct: 623 HHLFRRMQLEGVIPDKFTLATTLDTCLDSTTL 654



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/584 (23%), Positives = 259/584 (44%), Gaps = 107/584 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRL 145
           IF+ +E  N   +  ++ A  Q     +A  L++ ML  ++   ++YT   +  A A   
Sbjct: 82  IFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 146 SVFEGKLIHDHVLKAGFDSD----VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
            +  G+ IH  + + G + +      V N +INMYA CG    A  +F   P  D+VSW 
Sbjct: 142 DLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWT 201

Query: 202 SILAGYVN--------------------ADNV-------------EEAKFIYNKMPERNI 228
           ++   Y                      A NV              +  ++++ + E  +
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEAGL 261

Query: 229 ----IASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALISCYEQNEMYEEALVL 281
               +A N++I ++G+ G+   A  +FK M  +   DLVSW+A+IS   +   + +A+ +
Sbjct: 262 GFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTV-VKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           F  +    +  + V ++++L+A A   V   A    H                       
Sbjct: 322 FRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHG---------------------- 359

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMIS 399
                    +++++G+  D++  N++IS Y KCG    A  +F  +  K DV+SW+TM+ 
Sbjct: 360 ---------RIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLG 410

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI---RKNG 456
                  F + ++ F  M   GI P++ + +++++AC++  ALD G+ IH+ I   R++ 
Sbjct: 411 ASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRD- 469

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFH--GTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             + S + T L+ MY K G +  A  VF       + + +WN ++  +A N  + ++   
Sbjct: 470 -YVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 515 FSEMKKSGVTPNEITFVGVLGACR--------HMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
             EM + GV P+ ++F  VL +C          M +++ G+R   S   E  L       
Sbjct: 529 LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYR---SACLETAL------- 578

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
              + + GR   L++A  + + M    DV +W A++ A  ++ D
Sbjct: 579 ---ISMHGRCRELEQARSVFDEMDHG-DVVSWTAMVSATAENRD 618


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 376/714 (52%), Gaps = 64/714 (8%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-NVGVDNYTYPLLAQASALR 144
           + F  L   +G  +N ++  Y    +   A+  Y  M+ + +  +   T   + + S+  
Sbjct: 90  RTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSN 149

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             V  GK IH  V+K GF+S + V + L++MY+  G +S A+K                 
Sbjct: 150 GHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK----------------- 192

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                         ++  + +RN +  N+++      G + +A +LF+ M +KD VSWSA
Sbjct: 193 --------------VFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSA 237

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I    QN M +EA+  F  M    + +D+    SVL AC  L  +  G  +HA  ++  
Sbjct: 238 MIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTN 297

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           ++ +I + +ALI MY  C                             KC  +  A+ +FD
Sbjct: 298 LQDHIYVGSALIDMYCKC-----------------------------KC--LHYAKTVFD 326

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            M +K+VVSW+ M+ GY Q  +  E + +F++MQ  GI PD  TL   ISAC ++ +L++
Sbjct: 327 RMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEE 386

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G   H      GL     +  +L+ +Y K G +D++  +F+    +   SW A++  +A 
Sbjct: 387 GSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQ 446

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564
            G A +++++F +M + G+ P+ +T  GV+ AC   GLV++G R+F  MI E+ + P++ 
Sbjct: 447 FGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNG 506

Query: 565 HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
           HY CM+DL  R+G ++EA   I  MP  PD   W  LL AC+  G+ E+G+     L+EL
Sbjct: 507 HYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 566

Query: 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRT 684
            P H   + LLS+I+ASKG+WD V ++R  M  + V K PG S I+  G +H F A D +
Sbjct: 567 DPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDES 626

Query: 685 HPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITIS 744
            P  ++I   L+E+ +K+   GY PDT  V  D+++  K   L  HSE+LAIAFGLI + 
Sbjct: 627 SPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVP 686

Query: 745 PPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              PIR+ KNLR+C DCH A K IS    REI+VRD  RFH FK G+CSC DFW
Sbjct: 687 SGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 245/484 (50%), Gaps = 41/484 (8%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K+IH ++++     + +++N +++ YA+      AR++FD  P  +L SWN++L  Y  +
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
            ++ E +  + K+P+R+ +  N +I  +   G V  A + +  M                
Sbjct: 83  GHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM---------------- 126

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
                         M D    +  V ++++L   ++   V  G  +H   +K+G E Y+ 
Sbjct: 127 --------------MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLL 172

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           + + L+ MYS  G I+ A+K+F    + + + +N+++ G L CG +E A  LF  M EKD
Sbjct: 173 VGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKD 231

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            VSWS MI G AQ+    E +  F EM+  G++ D+    SV+ AC  L A++ G+ IHA
Sbjct: 232 SVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHA 291

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            I +  L+ +  +G+ LIDMY K  C+  A  VF   ++K V SW A+++G+   G A +
Sbjct: 292 CIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGE 351

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY---- 566
           ++++F +M++SG+ P+  T    + AC ++  ++EG +     I    +     HY    
Sbjct: 352 AVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLI-----HYITVS 406

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
             +V L G+ G + ++  L   M +  +V +W A++ A  + G      ++  K+V+L  
Sbjct: 407 NSLVTLYGKCGDIDDSTRLFNEMNVRDEV-SWTAMVSAYAQFGRAVEAIQLFDKMVQLGL 465

Query: 627 DHDG 630
             DG
Sbjct: 466 KPDG 469



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 15/268 (5%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           QI + +I T L    +  S LI           + Y+  +F  ++  N   +  M+  Y 
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKC---LHYAKTVFDRMKQKNVVSWTAMVVGYG 344

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q     +A+ ++  M  + +  D+YT      A A   S+ EG   H   + AG    + 
Sbjct: 345 QTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYIT 404

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V+N+L+ +Y  CGD+  + +LF+E  V D VSW ++++ Y       EA  +++KM +  
Sbjct: 405 VSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLG 464

Query: 228 I----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLV-----SWSALISCYEQNEMYEEA 278
           +    +    +I    R G V +  R F+ M  +  +      +S +I  + ++   EEA
Sbjct: 465 LKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEA 524

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           +  F+N +  R   D +   ++LSAC N
Sbjct: 525 MG-FINGMPFR--PDAIGWTTLLSACRN 549


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 311/505 (61%), Gaps = 40/505 (7%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           ++ ACA L  ++ G  +HA A K G    + +QN+L+H+Y +C                 
Sbjct: 122 LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC----------------- 164

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMI--EKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
                         G  E A  +FD M    +++VSW++M++ +A + + +E L++F EM
Sbjct: 165 --------------GLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 210

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
                 PD  T+VSV++AC    AL  G+ +H Y+ K GL  NS +   LID+Y K G V
Sbjct: 211 LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 270

Query: 478 DNALEVFHGTEEKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
           ++A  +F   EE G    V SW +LI+G A NG   ++LE+FS M++  + P EIT VGV
Sbjct: 271 NDARRIF---EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 327

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H GLVD+G R+F+ M +++ + P  +H GCMVDLLGRAG ++EA + I +MP+ P
Sbjct: 328 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 387

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           +   W  LLG+C  H   E+G+    +LVEL P H G +VLLSN++A+ G W DV  +R 
Sbjct: 388 NAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRK 447

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            MV+  V K PG S++E    ++EF+ GDR+HP+  +I  ML E+A++L+ EGY P T  
Sbjct: 448 TMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSN 507

Query: 714 VAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFD 773
           V  DI++EEKET L  HSE+LAIAF L+   P  PIRI+KNLR+C DCH A   IS+ +D
Sbjct: 508 VLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYD 567

Query: 774 REIVVRDRHRFHHFKHGSCSCMDFW 798
           REI+VRDR RFHHF+ G+CSC D+W
Sbjct: 568 REIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 186/421 (44%), Gaps = 55/421 (13%)

Query: 20  AKPIFKPTIN--LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP 77
           A P  +P +   +++L  HL    S     QI ++ +  G+       ++ + F    L 
Sbjct: 4   AIPSTRPALRHCVALLRLHLA-APSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALR 62

Query: 78  FIEMSYSFKIFAFLESPNG----FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT 133
              + Y+  + + L  P+G    F  NT++R       P+ A+ L++  L      D +T
Sbjct: 63  APPLRYAVAVLSRL-LPHGPLDPFPLNTVLRIAAGSPRPRVALELHRRRLALP---DTHT 118

Query: 134 YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193
           YP L QA A  L++ EG+ +H    K GF + V+V N+L+++Y  CG   +A K+FDE P
Sbjct: 119 YPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMP 178

Query: 194 V--LDLVSWNSILAGYVNADNVEEAKFIYNKM------PE-------------------- 225
           V   +LVSWNS+L  +       E   ++ +M      P+                    
Sbjct: 179 VRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALG 238

Query: 226 -------------RNIIASNSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQ 271
                         N   SN++I L+ + G+V +A R+F+EM   + +VSW++LI     
Sbjct: 239 RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAA 298

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYIN 330
           N   +EAL LF  M   +++  E+ +V VL AC++  +V  G      +    GI   I 
Sbjct: 299 NGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIE 358

Query: 331 LQNALIHMYSSCGEITTA-EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
               ++ +    G +  A + +       + + W +++        +E  +  ++ ++E 
Sbjct: 359 HLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVEL 418

Query: 390 D 390
           D
Sbjct: 419 D 419



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 40/292 (13%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           +   NS++ L+G  G    A ++F EMP   ++LVSW+++++ +  N    E L +F  M
Sbjct: 151 VFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEM 210

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           +      D   +VSVL+ACA    +  G  VH    K+G+    ++ NALI +Y+ CG +
Sbjct: 211 LGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSV 270

Query: 346 TTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
             A ++F+  G    ++SW S+I G                             +G+ + 
Sbjct: 271 NDARRIFEEMGLGRTVVSWTSLIVG--------------------------LAANGFGK- 303

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSIL 463
               E L LF  M+   + P E T+V V+ AC+H   +D G ++        G+      
Sbjct: 304 ----EALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEH 359

Query: 464 GTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
              ++D+  + G V+ A + +     E     W  L+   AM+    K LE+
Sbjct: 360 LGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMH----KKLEL 407



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%)

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  T   +I AC  L+AL +G+ +HA   KNG      +  +L+ +Y   G  ++A +V
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173

Query: 484 FHGTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           F     +G  + SWN+++  FA NG  ++ L +F EM      P+  T V VL AC   G
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 233

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            +  G R  +  +++  L  NS     ++DL  + G + +A  + E M +   V +W +L
Sbjct: 234 ALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 292

Query: 602 LGACKKHG 609
           +     +G
Sbjct: 293 IVGLAANG 300


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 343/572 (59%), Gaps = 49/572 (8%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RV 290
           S I+ F    ++  A R+F ++   +   W+ALI +C    +  + A+ L+  M++   V
Sbjct: 65  SRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSV 124

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           M D+     VL ACA L  +  G  +HA  +K+G +  + + N+L+H Y++         
Sbjct: 125 MQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYAT--------- 175

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                 C  ++ A+ +FD M E+ +VSW+ +I  + +  +F   
Sbjct: 176 ----------------------CDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L+LF EMQ     PD  T+ S+ +AC  + +L  G           +  + +L T+L+DM
Sbjct: 214 LNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLG-----------IVNDVLLNTSLVDM 261

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEIT 529
           Y K G ++ AL++FH   ++ V+SWN++I+GF+ +G    +LE F  M ++  + PN IT
Sbjct: 262 YCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAIT 321

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
           FVGVL AC H GLV EG R+F+ M+ E++++P  +HYGC+VDLL RAG++ EA +++ +M
Sbjct: 322 FVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNM 381

Query: 590 PMSPDVATWGALLGAC-KKHGDHEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDD 647
           PM PD+  W +LL AC K++   E+ E + R+++E +     G +VLLS ++AS  RW+D
Sbjct: 382 PMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWND 441

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M  +GVVK PGCS IE +G+ HEF AGD +HPQ  EI + LD + ++++  GY
Sbjct: 442 VGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGY 501

Query: 708 APDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           +PD+ +    D   + K+ +L  HSE+LAIAFGL+   P  PIRI KNLR+CN+CH   K
Sbjct: 502 SPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTK 561

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            ISR F+REI+VRDR RFHHFK G+CSCMD+W
Sbjct: 562 LISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 189/392 (48%), Gaps = 50/392 (12%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADT---FAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L  C    Q  Q+ +Q I T         F  SR++ FS+      ++ Y+F++F  +E+
Sbjct: 33  LNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSS----LHDLRYAFRVFHQIEN 88

Query: 94  PNGFIFNTMMRAYIQR-NVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLSVFEGK 151
           PN F++N ++RA  +  +  Q AI LY  ML   +V  D +T+P + +A A   ++ EG+
Sbjct: 89  PNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGE 148

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            IH  +LK GFDSDVY+NN+L++ YA C  L  A+ +FD      LVSWN ++  +V   
Sbjct: 149 QIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFG 208

Query: 212 NVEEAKFIYNKMPE---------------------------RNIIASNSMIVLFGRKGNV 244
             + A  ++ +M +                            +++ + S++ ++ + G++
Sbjct: 209 EFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSL 268

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMVDEVVVVSVLSA 303
             A +LF  MPK+D+ SW+++I  +  +     AL  F  M+   ++M + +  V VLSA
Sbjct: 269 ELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSA 328

Query: 304 CANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL---- 358
           C +  +V  G     + V +  I+  +     L+ + +  G I  A    D   N+    
Sbjct: 329 CNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEA---LDVVSNMPMRP 385

Query: 359 DLISWNSMISGYLKCG-----SVEKARALFDA 385
           DL+ W S++    K       S E AR + +A
Sbjct: 386 DLVIWRSLLDACCKQNAGVELSEEMARRVLEA 417


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 340/572 (59%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +++ SN +I ++ + G+V  A ++F EMP + LVSW+ +I    QN    EAL L + M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                  E  + SVL ACA    +     +HA A+K  ++  + +  AL+ +Y+      
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA------ 211

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KCG ++ A  +F++M ++ VV+WS+M +GY Q++ 
Sbjct: 212 -------------------------KCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEM 246

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           + + L+LF +    G++ D+  + SVI AC  L A+ +GK ++A + K+G   N  + ++
Sbjct: 247 YEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASS 306

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LIDMY K G ++ + +VF   E++ V  WNA+I G + +  + + + +F +M++ G++PN
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           ++TFV VL AC HMGLV +G ++F+ M +EH L PN  HY CMVD L RAG + EA +LI
Sbjct: 367 DVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLI 426

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             +P +   + WG+LL +C+ HG+ E+ E   +KL +++P + G ++LLSN++A+ G+WD
Sbjct: 427 SKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWD 486

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           +V ++R ++    V K  G S IE    +H F+ G+R HP+I EI + L+E+  +L+  G
Sbjct: 487 EVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLG 546

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  +T      + +  K+  L  HSEKLA   GL+ + P  PIRIMKNLRIC DCH+  K
Sbjct: 547 YKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMK 606

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S+ F R+++VRD +RFHHFK+G CSC DFW
Sbjct: 607 LASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 183/406 (45%), Gaps = 72/406 (17%)

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           A R  + +GK  H  +L  G  +D+  +N LINMY+ CG +  AR++FDE P   LVSWN
Sbjct: 75  AKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWN 134

Query: 202 SILAGYVNADNVEEA---------------------------------------KFIYNK 222
           +++          EA                                        F    
Sbjct: 135 TMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKA 194

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
             + N+  + +++ ++ + G + +A  +F+ MP + +V+WS++ + Y QNEMYE+AL LF
Sbjct: 195 AMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALF 254

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
               +  +  D+ ++ SV+ ACA L  +  G  ++AL  K G    I + ++LI MY+ C
Sbjct: 255 RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKC 314

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G I  + K+F      +++ WN+                               MISG +
Sbjct: 315 GGIEESYKVFRDVEKRNVVLWNA-------------------------------MISGLS 343

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINS 461
           +H +  E + LF +MQ  G+ P++ T VSV+SAC H+  + +G K+     +++ L  N 
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNV 403

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNG 506
              + ++D   + G +  A ++          S W +L+     +G
Sbjct: 404 FHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHG 449



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 139/255 (54%), Gaps = 2/255 (0%)

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G   DL++ N +I+ Y KCGSV+ AR +FD M  + +VSW+TMI    Q+ + +E L L 
Sbjct: 94  GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL 153

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
           ++MQ  G    E T+ SV+ AC    AL + + +HA+  K  + +N  + T L+D+Y K 
Sbjct: 154 LQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKC 213

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A+ VF    ++ V +W+++  G+  N + +++L +F +  ++G+  ++     V+
Sbjct: 214 GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVI 273

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC  +  + EG +  N+++ +     N      ++D+  + G ++E+ ++   +    +
Sbjct: 274 CACAGLAAMIEG-KQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRN 331

Query: 595 VATWGALLGACKKHG 609
           V  W A++    +H 
Sbjct: 332 VVLWNAMISGLSRHA 346



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 64/387 (16%)

Query: 51  SQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRN 110
           +Q++L GL  D   ++ LI   +       + ++ ++F  + S +   +NTM+ +  Q  
Sbjct: 88  AQILLMGLKTDLLTSNILINMYSKC---GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNG 144

Query: 111 VPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN 170
              +A+ L   M         +T   +  A A + ++ E +L+H   +KA  D +V+V  
Sbjct: 145 EENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVAT 204

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----- 225
            L+++YA CG +  A  +F+  P   +V+W+S+ AGYV  +  E+A  ++ K  E     
Sbjct: 205 ALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKH 264

Query: 226 ----------------------------------RNIIASNSMIVLFGRKGNVAEACRLF 251
                                              NI  ++S+I ++ + G + E+ ++F
Sbjct: 265 DQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVF 324

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           +++ K+++V W+A+IS   ++    E ++LF  M    +  ++V  VSVLSAC ++ +V+
Sbjct: 325 RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVR 384

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS--------- 362
            G     L  K       +L   + H       ++ A ++F+A    DLIS         
Sbjct: 385 KGQKYFDLMTKEH-----HLAPNVFHYSCMVDTLSRAGQIFEA---YDLISKLPFNASAS 436

Query: 363 -WNSMISGYLKCGSVE----KARALFD 384
            W S+++     G++E     A+ LFD
Sbjct: 437 MWGSLLASCRTHGNLELAEVAAKKLFD 463



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 406 QFSETLS---LFMEMQHHGIRPDEATLVS----VISACTHLVALDQGKWIHAYIRKNGLK 458
           QF  +LS     +E +    +   AT VS    ++  C     L QGK  HA I   GLK
Sbjct: 37  QFFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLK 96

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            + +    LI+MY K G VD A +VF     + + SWN +I     NG  +++L++  +M
Sbjct: 97  TDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQM 156

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           ++ G   +E T   VL AC     + E     ++   +  ++ N      ++D+  + G+
Sbjct: 157 QREGTPFSEFTISSVLCACAAKCALSECQL-LHAFAIKAAMDLNVFVATALLDVYAKCGL 215

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           +K+A  + ESMP    V TW ++     ++  +E    + RK  E    HD F  L+S++
Sbjct: 216 MKDAVCVFESMP-DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF--LMSSV 272


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/709 (34%), Positives = 388/709 (54%), Gaps = 75/709 (10%)

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           N+   L+AQ++  + S+   + +H +V+K+GF S  ++ + LI+ Y  CG L+ ARKLFD
Sbjct: 2   NFYSSLIAQSAHTK-SLTTLRAVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFD 59

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII--------------------- 229
           E P   +V+WNS+++ +++    +EA   Y  M    ++                     
Sbjct: 60  ELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRH 119

Query: 230 -------------------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                               +++++ ++ +   + +A  +F+ + +KD+V ++ALI  Y 
Sbjct: 120 GQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYA 179

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
           Q+ +  EAL +F +M++  V  +E  +  +L  C NL  +  G  +H L VK G+E  + 
Sbjct: 180 QHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVA 239

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            Q +L+ MYS                               +C  +E +  +F+ +   +
Sbjct: 240 SQTSLLTMYS-------------------------------RCNMIEDSIKVFNQLDYAN 268

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
            V+W++ + G  Q+ +    +S+F EM    I P+  TL S++ AC+ L  L+ G+ IHA
Sbjct: 269 QVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHA 328

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
              K GL  N   G  LI++Y K G +D A  VF    E  V + N++I  +A NG   +
Sbjct: 329 ITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHE 388

Query: 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570
           +LE+F  +K  G+ PN +TF+ +L AC + GLV+EG + F S+   H +E    H+ CM+
Sbjct: 389 ALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMI 448

Query: 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630
           DLLGR+  L+EA  LIE +  +PDV  W  LL +CK HG+ EM E+V  K++EL P   G
Sbjct: 449 DLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGG 507

Query: 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINE 690
            H+LL+N++AS G+W+ V+E++  +    + K P  S ++ +  +H F+AGD +HP+  E
Sbjct: 508 THILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLE 567

Query: 691 IDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLI-TISPPNPI 749
           I  ML  + KK+K  GY P+T  V  D+D+E+K ++L+ HSEKLAIA+ L  TI     I
Sbjct: 568 IFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTI 627

Query: 750 RIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           RI KNLR+C DCH+  KF+S    R+I+ RD  RFHHFK G CSC D+W
Sbjct: 628 RIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 208/474 (43%), Gaps = 72/474 (15%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  L S +   +N+M+ ++I     ++A+  Y  ML   V  D YT+  +++A +   
Sbjct: 56  KLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLG 115

Query: 146 SVFEGKLIHDHVLKAGFDS-DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            +  G+  H   +  G +  D +V + L++MYA    +  A  +F      D+V + +++
Sbjct: 116 LIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALI 175

Query: 205 AGYVNADNVEEAKFIYNKMPER-------------------------------------- 226
            GY       EA  I+  M  R                                      
Sbjct: 176 VGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLE 235

Query: 227 NIIASN-SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           +++AS  S++ ++ R   + ++ ++F ++   + V+W++ +    QN   E A+ +F  M
Sbjct: 236 SVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREM 295

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
           I   +  +   + S+L AC++L +++ G  +HA+ +K+G++       ALI++Y  CG +
Sbjct: 296 IRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNM 355

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A  +FD    LD+++ NSM                               I  YAQ+ 
Sbjct: 356 DKARSVFDVLTELDVVAINSM-------------------------------IYAYAQNG 384

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILG 464
              E L LF  +++ G+ P+  T +S++ AC +   +++G  I A IR N  +++     
Sbjct: 385 FGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHF 444

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           T +ID+  +   ++ A  +        V  W  L+    ++G  + + ++ S++
Sbjct: 445 TCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKI 498



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 176/411 (42%), Gaps = 57/411 (13%)

Query: 32  ILETHLQKCQSFKQFTQILSQM-------------ILTGL-IADTFAASRLIKFSTDLLP 77
           ++E  L    +F   ++  SQ+             ++ GL + D F AS L+        
Sbjct: 93  LMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYA---K 149

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
           F +M  +  +F  +   +  +F  ++  Y Q  +  +A+ +++ M+N  V  + YT   +
Sbjct: 150 FDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACI 209

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
                    +  G+LIH  V+K+G +S V    +L+ MY+ C  +  + K+F++    + 
Sbjct: 210 LINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQ 269

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMP--------------------------------- 224
           V+W S + G V     E A  I+ +M                                  
Sbjct: 270 VTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAI 329

Query: 225 ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                 + N  A  ++I L+G+ GN+ +A  +F  + + D+V+ +++I  Y QN    EA
Sbjct: 330 TMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEA 389

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA-LAVKIGIECYINLQNALIH 337
           L LF  + +  ++ + V  +S+L AC N  +V+ G  + A +     IE  I+    +I 
Sbjct: 390 LELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMID 449

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           +      +  A  L +   N D++ W ++++     G VE A  +   ++E
Sbjct: 450 LLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILE 500


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/662 (35%), Positives = 363/662 (54%), Gaps = 19/662 (2%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS----WNSILAGYV 208
           +H  +    F  D ++   L   +  C  L  AR L   + V  L       +S+L  Y+
Sbjct: 7   LHHFLRHVSFPPDPHL---LPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYL 63

Query: 209 NADNVEEAKFIYNKMP--ERNIIASNSMIVLFGRKGNVAEACRLFKEMPK-----KDLVS 261
                  A+ +++ MP  +R ++  ++++     +G+   A RL +EM +      ++++
Sbjct: 64  RLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVIT 123

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS-VLSACANLTVVKAGTSVHALA 320
           W+ L+S   ++    +A+V    M    ++  +   VS  LSA  ++ +V  G  +H  A
Sbjct: 124 WNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYA 183

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           VK G      +  ALI MY  CG+     ++FD   ++D+ S N++I+G  +   V +A 
Sbjct: 184 VKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEAL 243

Query: 381 ALF----DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
            LF    D  +E +VVSW+++++   Q+ +  E +  F EMQ  G  P+  T+  V+ A 
Sbjct: 244 RLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAF 303

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            ++ AL  G+  H +  + G   +  + + L+DMY K G V +A  +F     + V SWN
Sbjct: 304 ANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWN 363

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           A+I G+AM G A  ++ MF  M K    P+ +TF  +L AC   GL +EG  +F  M  E
Sbjct: 364 AMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNE 423

Query: 557 HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
           + + P  +HY CMV LLGRAG L EA +LI  MP  PD   WG+LLG+C+ HG+ ++ E 
Sbjct: 424 YGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEV 483

Query: 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
              KL  L+P++ G +VLLSNI+ASK  WD V  VR MM   G+ K  GCS IE    +H
Sbjct: 484 AAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVH 543

Query: 677 EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
             LAGD +HP +  I   ++++  +++  G+ P T  V  D++++EK+  L  HSEKLA+
Sbjct: 544 MLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAV 603

Query: 737 AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
           A GLI+ SP   +R++KNLRIC DCH A KFIS    REI VRD +RFHHF  G CSC D
Sbjct: 604 ALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGD 663

Query: 797 FW 798
           FW
Sbjct: 664 FW 665



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 136/284 (47%), Gaps = 40/284 (14%)

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+ +H + +KAG  +D  V   LI+MY  CG  +   ++FDES  +D+ S N+++AG   
Sbjct: 176 GQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAG--- 232

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSAL 265
                                         R   V EA RLFKE   +    ++VSW+++
Sbjct: 233 ----------------------------LSRNAQVCEALRLFKEFVDRGVELNVVSWTSI 264

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           ++C  QN    EA+  F  M       + V +  VL A AN+  +  G S H  A++ G 
Sbjct: 265 VACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGF 324

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA 385
              + + +AL+ MY+ CG +  A  +FD   + +++SWN+MI GY   G    A  +F +
Sbjct: 325 LHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHS 384

Query: 386 MI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRP 424
           M+    + D+V+++ +++   Q     E    F EM + +G+ P
Sbjct: 385 MLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSP 428



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 42/212 (19%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++   +Q     +A+  ++ M       ++ T P +  A A   ++  G+  H   L
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFAL 320

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY----------- 207
           + GF  DVYV++ L++MYA CG +  AR +FD     ++VSWN+++ GY           
Sbjct: 321 RKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVW 380

Query: 208 ------------------------VNADNVEEAKFIYNKMPERNIIASN-----SMIVLF 238
                                     A   EE +  + +M     ++        M+ L 
Sbjct: 381 MFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLL 440

Query: 239 GRKGNVAEACRLFKEMP-KKDLVSWSALI-SC 268
           GR G + EA  L  +MP + D   W +L+ SC
Sbjct: 441 GRAGKLDEAYDLISDMPFEPDAYIWGSLLGSC 472


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/754 (33%), Positives = 387/754 (51%), Gaps = 76/754 (10%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +   N   + +++  YIQ       + L+  M    V  ++ T+  +    A + 
Sbjct: 160 KVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQG 219

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V  G+ +H   +K G  S V+V N+L+NMYA CG +  AR +F      D+VSWN+++A
Sbjct: 220 MVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMA 279

Query: 206 GYV-NADNVEEAKFIYNKMPERNIIA---------------------------------- 230
           G V N  ++E  +  ++      ++                                   
Sbjct: 280 GLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHS 339

Query: 231 -SNSMIVL---FGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVLFMNM 285
             N M  L   + + G +  A  +F  M   +++VSW+A+I+   QN     A  LF  M
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
            +  V  ++    ++L+A    +V      +HA  +K   EC   +  AL+  YS     
Sbjct: 400 REDGVAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYS----- 450

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     K  + E+A ++F  + +KDVVSWS M++ YAQ  
Sbjct: 451 --------------------------KLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 484

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILG 464
                 ++F++M  HG++P+E T+ SVI AC    A +D G+  HA   K+       + 
Sbjct: 485 DSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVS 544

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           + L+ MY + G +++A  +F    ++ + SWN+++ G+A +G + K+L++F +M+  G+ 
Sbjct: 545 SALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIE 604

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
            + +TF+ V+  C H GLV+EG R+F+SM +++ + P  +HY CMVDL  RAG L EA  
Sbjct: 605 MDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMS 664

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LIE M        W  LLGACK H + E+G+    KL+ L+P     +VLLSNI+++ G+
Sbjct: 665 LIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGK 724

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W +  EVR +M  + V K  GCS I+    +H F+A D++HP   +I   L  M  KLK 
Sbjct: 725 WKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQ 784

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
           EGY PDT     ++ +E+KE  L  HSE+LA+AFGLI   P  P+ I KNLR+C DCHT 
Sbjct: 785 EGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTV 844

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K +S+  DREIV+RD  RFHHF  G CSC DFW
Sbjct: 845 IKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 220/489 (44%), Gaps = 81/489 (16%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++    S++ ++ +  +V +  ++F+ MPK+++V+W++L++ Y Q+    + + LF  M 
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              V  + V   SVLS  A+  +V  G  VHA +VK G    + + N+L++MY+ CG + 
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 347 TAEKLFDAGHNLDLISWNSMISGYL--------------------------------KCG 374
            A  +F      D++SWN++++G +                                 C 
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 375 SVEK---ARALFDAMIEKDVVSW----STMISGYAQHDQFSETLSLFM------------ 415
           ++++   AR L  +++++   S+    + ++  Y++  Q    L +F+            
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 416 --------------------EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
                                M+  G+ P++ T  ++++A    +       IHA + K 
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQ----IHAQVIKT 433

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
             +  SI+GT L+  Y KL   + AL +F   ++K V SW+A++  +A  G +D +  +F
Sbjct: 434 NYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIF 493

Query: 516 SEMKKSGVTPNEITFVGVLGACRH-MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
            +M   G+ PNE T   V+ AC      VD G R F+++  +HR          +V +  
Sbjct: 494 IKMTMHGLKPNEFTISSVIDACASPTAGVDLG-RQFHAISIKHRCHDALCVSSALVSMYA 552

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG---F 631
           R G ++ A+ + E      D+ +W ++L    +HG  +    V R++     + DG    
Sbjct: 553 RKGSIESAQCIFERQT-DRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFL 611

Query: 632 HVLLSNIHA 640
            V++   HA
Sbjct: 612 SVIMGCAHA 620



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 24/237 (10%)

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRPDEATLVSVISACT 437
           AR  FD +  ++ +  +  +  +A+     + L  F+++   HG R     LV V+  C 
Sbjct: 57  ARQAFDEIPHRNTLDHA--LFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 438 HLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            +     GK +H    + G     + +GT+L+DMYMK   V +  +VF    ++ V +W 
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           +L+ G+  +G     +E+F  M+  GV PN +TF  VL      G+VD G          
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG---------- 224

Query: 557 HRLEPNSKHYGC---------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            R+   S  +GC         ++++  + G+++EA  +   M  + D+ +W  L+  
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGME-TRDMVSWNTLMAG 280


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 383/715 (53%), Gaps = 45/715 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  ++ P  F  N+M+  Y++      A+ L+  M   +V   N     L+Q+  +R 
Sbjct: 194 RLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVRE 253

Query: 146 SVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           ++    ++ D   K    DS  Y ++        C  LS+ R             W   L
Sbjct: 254 AL---DMVVDMQSKGVRLDSTTYTSS-----LTACARLSSLR-------------WGKQL 292

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                      A+ I N +P  +   +++++ L+ + G   EA  +F  +  ++ V+W+ 
Sbjct: 293 ----------HAQVIRN-LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           LI+ + Q+  + E++ LF  M    + +D+  + +++S C +   +  G  +H+L +K G
Sbjct: 342 LIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + + N+LI MY+ C  + +AE +F   +  D++SW SMI+ + + G++ KAR  FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFD 461

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALD 443
            M  K+V++W+ M+  Y QH    + L ++  M     +RPD  T V++   C  L A  
Sbjct: 462 GMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK 521

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
            G  I     K GL +++ +   +I MY K G +  A +VF     K + SWNA+I G++
Sbjct: 522 LGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
            +G+  +++E+F ++ K G  P+ I++V VL  C H GLV EG  +F+ M + H + P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGL 641

Query: 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
           +H+ CMVDLLGRAG L EA++LI+ MPM P    WGALL ACK HG++E+ E   + + E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 624 LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDR 683
           L     G ++L++ I+A  G+ DD  ++R +M  +G+ K PG S +E N  +H F A D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDV 761

Query: 684 THPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI 743
           +HPQ+  I   LDE+ +K+   GY            + +   +   HSEKLA+AFGL+++
Sbjct: 762 SHPQVIAIRKKLDELMEKIARLGYV-----------RTDSPRSEIHHSEKLAVAFGLMSL 810

Query: 744 SPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               PI IMKNLRIC DCHT  K IS    RE V+RD  RFHHF  GSCSC D+W
Sbjct: 811 PAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 234/510 (45%), Gaps = 69/510 (13%)

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  ++  G  S V++ NTL++ Y  CG L  AR+L                         
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRL------------------------- 61

Query: 214 EEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                +   +   N+I  N M+  + + G +++A  LF  MP +D+ SW+ L+S Y Q++
Sbjct: 62  -----LLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQ 116

Query: 274 MYEEALVLFMNMIDHRV---MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330
            Y  +L  F++M  HR      +       + +C  L        +  +  K G +   +
Sbjct: 117 QYLASLESFVSM--HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSD 174

Query: 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AL+ M+  CG +  A +LF       +   NSM+ GY+K   V+ A  LFD+M E+D
Sbjct: 175 VAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERD 234

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
           VVSW+ M+S  +Q  +  E L + ++MQ  G+R D  T  S ++AC  L +L  GK +HA
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK 510
            + +N   I+  + + L+++Y K GC   A  VF+   ++   +W  LI GF  +G   +
Sbjct: 295 QVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTE 354

Query: 511 SLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRH--------------FNSMIQ 555
           S+E+F++M+   +T ++     ++ G C  M L      H               NS+I 
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 556 EHRL---------------EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            +                 E +   +  M+    + G + +A E  + M  + +V TW A
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMS-TKNVITWNA 473

Query: 601 LLGACKKHGDHEMGERVGRKLV---ELQPD 627
           +LGA  +HG  E G R+   ++   +++PD
Sbjct: 474 MLGAYIQHGAEEDGLRMYNVMLSEKDVRPD 503



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 184/396 (46%), Gaps = 40/396 (10%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   +  S +   Q+ +Q+I      D + AS L++       F E      +F  L   
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAK---GVFNSLHDR 334

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           N   +  ++  ++Q     +++ L+  M    + +D +    L      R+ +  G+ +H
Sbjct: 335 NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              LK+G    V V+N+LI+MYA C +L +A  +F      D+VSW S++  +    N+ 
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIA 454

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
           +A+  ++ M  +N+I                               +W+A++  Y Q+  
Sbjct: 455 KAREFFDGMSTKNVI-------------------------------TWNAMLGAYIQHGA 483

Query: 275 YEEALVLFMNMIDHR-VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
            E+ L ++  M+  + V  D V  V++   CA+L   K G  +    VK+G+    ++ N
Sbjct: 484 EEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVAN 543

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK---- 389
           A+I MYS CG I  A K+FD  +  D++SWN+MI+GY + G  ++A  +FD ++++    
Sbjct: 544 AVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKP 603

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQH-HGIRP 424
           D +S+  ++SG +      E  S F  M+  H I P
Sbjct: 604 DYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISP 639



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 157/345 (45%), Gaps = 41/345 (11%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF--DAGHNL 358
           L +C     +    ++H   V +G+   + LQN L+H Y SCG +  A +L   D  H  
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHP- 69

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           ++I+ N M++GY+K G +  A  LF  M  +DV SW+T++SGY Q  Q+  +L  F+ M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 419 HHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC- 476
             G   P+  T    + +C  L        +   ++K G + +S +   L+DM+++ G  
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 477 ------------------------------VDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
                                         VD+ALE+F    E+ V SWN ++   + +G
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
              ++L+M  +M+  GV  +  T+   L AC  +  +  G +    +I   R  P    Y
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI---RNLPCIDPY 306

Query: 567 --GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
               +V+L  + G  KEA+ +  S+    +VA W  L+    +HG
Sbjct: 307 VASALVELYAKCGCFKEAKGVFNSLHDRNNVA-WTVLIAGFLQHG 350


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/838 (30%), Positives = 418/838 (49%), Gaps = 100/838 (11%)

Query: 22  PIFKPTINLS-ILETHLQK-------CQSFKQFTQILSQ--MILTGLIADTFAASRLIKF 71
           P  KP++N + +++ H+ K       C+S  Q    L +  ++    + D   A   I  
Sbjct: 18  PAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISL 77

Query: 72  S---TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
           +   +  L F ++S + ++F  +       +  ++  Y+Q N  ++A  LY  M    + 
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 129 VDNYTYPLLAQASALRLSVFEGKL--------IHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            D  T   L       LS F G+L        IH HV+K G++ ++ V N+L++ Y    
Sbjct: 138 PDYVTLVTL-------LSGF-GELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA------------------------ 216
            L  A +LF      D V++NS++ GY N    EEA                        
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 217 ---------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                           F+       N+   N+++  + +   V E  +LF EMP+ D +S
Sbjct: 250 AAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGIS 309

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           ++ +I+ Y  N  ++E+  LF  +   R    +    ++LS   +   ++ G  +H  A+
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
            +G      ++NAL+ MY+                               KC   ++A+ 
Sbjct: 370 TVGANFESRVENALVDMYA-------------------------------KCNGDKEAQK 398

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +FD +  K  V W+ MIS Y Q  +  E +++F +M+  G+  D+AT  S++ AC +L +
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           +  G+ +H+ + ++G   N   G+ L+D Y K GC+ +A++ F    E+   SWNALI  
Sbjct: 459 ISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISA 518

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +A NG  D +L  F +M +SG  P+ ++F+ VL AC H G V+E   HFNSM Q + + P
Sbjct: 519 YAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTP 578

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HY  MVD+L R G   EAE+L+  MP  P    W ++L +C+ H +HE+ ++   +L
Sbjct: 579 KREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRL 638

Query: 622 VELQPDHDGF-HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
             ++   D   ++ +SNI+A  G+WD+V +V+  M  RGV K+P  S +E     H F A
Sbjct: 639 FNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSA 698

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            D++HP++ +I   ++ ++K+++ +GY PDT     D+D+  K  +L  HSE+ AIAF L
Sbjct: 699 NDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFAL 758

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +     +PI +MKNLR C DCH A K IS+  +REI+VRD  RFHHFK G CSC D+W
Sbjct: 759 MNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/573 (22%), Positives = 235/573 (41%), Gaps = 105/573 (18%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           +L  + A + S+    LI  H++K GF+ +   +N  +N +   GDL  A ++FD+ P  
Sbjct: 13  VLRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAK 72

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           + +S N +++G++        KF                       G +++A  LF  M 
Sbjct: 73  NTISLNMMISGHL--------KF-----------------------GKLSKARELFDGMV 101

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           ++  VSW+ LI  Y Q+   +EA  L+ +M    +  D V +V++LS    L        
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   +K+G E  + + N+L+  Y     +  A +LF    N D +++NS+++GY   G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 376 VEKA-------------------RALFDAMIEKDVVSWSTMISG---------------- 400
            E+A                    AL  A +  D   +   + G                
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 401 ----YAQHDQ-------------------------------FSETLSLFMEMQHHGIRPD 425
               Y++HDQ                               F E+  LF ++Q       
Sbjct: 282 LLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           +    +++S  T  + L  G+ IH      G    S +   L+DMY K      A ++F 
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K    W A+I  +   G  ++ + +FS+M+++GV  ++ TF  +L AC ++  +  
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G R  +S++       N      ++D   + G + +A +    MP    V +W AL+ A 
Sbjct: 462 G-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV-SWNALISAY 519

Query: 606 KKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
            ++G+ +      +++++   +PD   F  +LS
Sbjct: 520 AQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 335/571 (58%), Gaps = 32/571 (5%)

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-D 287
           +ASN +  ++ + G ++EACR+F +MP+KD V+W+A+I  Y +N   E A++ F +M  +
Sbjct: 78  VASN-LADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKRE 136

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             V  D+ V  SVLSA   L       S+H    K G E  + ++NALI MY+   ++ +
Sbjct: 137 GLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVES 196

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A ++      +D   WN                          VVS ++MI GY + D  
Sbjct: 197 ASRVL----KIDPGGWN--------------------------VVSGTSMIDGYIETDCV 226

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L +++E++  G+ P+E T  S+I  C     L+QG  +HA + K  L  +S +G+TL
Sbjct: 227 EEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTL 286

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G +  ++++F+  E +   +WNA+I  FA +G   ++++ F  M  SG+ PN 
Sbjct: 287 VDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNH 346

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           I FV +L AC H GLVDEG ++F SM + H +EP  +HY C++D  GRAG L EA + I 
Sbjct: 347 IAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFIS 406

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
            MP+ P+   W +LLGAC+  G  E+GE   + L++L+P + G HV LS I+AS G+W+D
Sbjct: 407 EMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWED 466

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M    + K+PG S +++N   H F + D +HPQ  +I   L+E+  ++K EGY
Sbjct: 467 VKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGY 526

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PDT  +  +++   KE  L  HSE++A+AF LI++    PI + KNLRIC DCHTA KF
Sbjct: 527 IPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKF 586

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           I +   R+I+VRD  RFHHF +G CSC D+W
Sbjct: 587 ICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 199/470 (42%), Gaps = 112/470 (23%)

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
           ++ GFD++++V + L +MY+ CG LS A ++FD+ P  D V+W +++ GY    ++E A 
Sbjct: 68  VRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAV 127

Query: 218 FIYNKMPERNIIAS----------------------------------------NSMIVL 237
             +  M    ++ +                                        N++I +
Sbjct: 128 LSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDM 187

Query: 238 FGRKGNVAEACRLFKEMPKK-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           + +  +V  A R+ K  P   ++VS +++I  Y + +  EEALV+++ +    V  +E  
Sbjct: 188 YAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFT 247

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356
             S++  CA   +++ G  +HA  +K  +     + + L+ MY  CG I+ + +LF+   
Sbjct: 248 FSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIE 307

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFME 416
               I+WN+                               +I+ +AQH    E +  F  
Sbjct: 308 YRTDIAWNA-------------------------------VINVFAQHGHGREAIQAFDR 336

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           M + GIRP+    VS+++AC+H   +D+G K+ ++    +G++      + +ID Y + G
Sbjct: 337 MIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAG 396

Query: 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
            +D A                                +  SEM    + PN   +  +LG
Sbjct: 397 RLDEA-------------------------------YKFISEMP---IKPNAYGWCSLLG 422

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           ACR  G  + G     +++   +LEP +   G  V L G    L + E++
Sbjct: 423 ACRMRGSKELGEVAAQNLM---KLEPGNT--GIHVSLSGIYASLGQWEDV 467


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/755 (33%), Positives = 398/755 (52%), Gaps = 76/755 (10%)

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            ++F  +   N   + +++       +  + + L+  M    +  + +T+  +  A A +
Sbjct: 155 IEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQ 214

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            ++  G+ +H   +K G  S V+V N+L+NMYA CG +  A+ +F+     D+VSWN+++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274

Query: 205 AGY-VNADNVE------EAKFIYNKMPERNI----------------------------- 228
           AG  +N   +E      E++    KM +                                
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334

Query: 229 IASNSMIVL---FGRKGNVAEACRLFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           +  N M  L   + + G +A+A  +F      +++VSW+A+IS   QN     A+VLF  
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M + RVM +E    ++L A  +L+++     +HA  +K   +   ++  AL+  YS    
Sbjct: 395 MREDRVMPNEFTYSAMLKA--SLSILPP--QIHAQVIKTNYQHIPSVGTALLASYS---- 446

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
                                      K GS E A ++F  + +KDVV+WS M+S +AQ 
Sbjct: 447 ---------------------------KFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQA 479

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSIL 463
                   LF +M   GI+P+E T+ SVI AC    A +DQG+  HA   K        +
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
            + L+ MY + G +D+A  VF    ++ + SWN++I G+A +G + K++E F +M+ SG+
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
             + +TF+ V+  C H GLV EG ++F+SM+++H++ P  +HY CMVDL  RAG L E  
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETM 659

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
            LI  MP       W  LLGAC+ H + E+G+    KL+ L+P     +VLLSNI+A+ G
Sbjct: 660 SLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAG 719

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           +W +  EVR +M  R V K  GCS I+    +H F+A D++HP  ++I   L  +  +LK
Sbjct: 720 KWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLK 779

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
            +GY+P+T  V  DI +++KE  L  HSE+LA+AFGLI   P  P++I+KNLR+C DCH 
Sbjct: 780 QDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHM 839

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K +S   DREI++RD  RFHHF  G+CSC DFW
Sbjct: 840 VMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 183/393 (46%), Gaps = 52/393 (13%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           + A  S++ ++ + G+V E   +F+ MPKK++V+W++L++     +M+ E + LF  M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  +     SVLSA A+   +  G  VHA +VK G    + + N+L++MY+ CG +  
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A+ +F+     D++SWN++++G L+    E                              
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAG-LQLNECEL----------------------------- 284

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF E +    +  ++T  +VI  C +L  L   + +H+ + K+G  +   + T L
Sbjct: 285 -EALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTAL 343

Query: 468 IDMYMKLGCVDNALEVFH-GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            D Y K G + +AL +F   T  + V SW A+I G   NG    ++ +FS M++  V PN
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPN 403

Query: 527 EITFVGVLGACR-------HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           E T+  +L A         H  ++   ++H  S +    L   SK +G   D L    M+
Sbjct: 404 EFTYSAMLKASLSILPPQIHAQVIKTNYQHIPS-VGTALLASYSK-FGSTEDALSIFKMI 461

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++            DV  W A+L    + GD E
Sbjct: 462 EQK-----------DVVAWSAMLSCHAQAGDCE 483



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 169/359 (47%), Gaps = 32/359 (8%)

Query: 253 EMPKKDL-VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           E+P++D  V  + ++  Y +  M  E L  F       V+VD   +  VL AC ++    
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRV 116

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H L VK G +                GE++    L D                Y+
Sbjct: 117 LGEQLHCLCVKCGHDR---------------GEVSAGTSLVDM---------------YM 146

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           KCGSV +   +F+ M +K+VV+W+++++G A     SE ++LF  M+  GI P+  T  S
Sbjct: 147 KCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFAS 206

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V+SA     ALD G+ +HA   K G + +  +  +L++MY K G V++A  VF+  E + 
Sbjct: 207 VLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD 266

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + SWN L+ G  +N    ++L++F E + +     + T+  V+  C ++  +    R  +
Sbjct: 267 MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALA-RQLH 325

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           S + +H           + D   + G L +A  +      S +V +W A++  C ++GD
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)

Query: 379 ARALFDAMIEKDV-VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           AR   D +  +D  V  + ++  YA+     E L  F   +  G+  D ATL  V+ AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 438 HLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            +     G+ +H    K G     +  GT+L+DMYMK G V   +EVF G  +K V +W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           +L+ G A   +  + + +F  M+  G+ PN  TF  VL A    G +D G          
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG---------- 220

Query: 557 HRLEPNSKHYGC---------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            R+   S  +GC         ++++  + G++++A+ +   M  + D+ +W  L+  
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAG 276


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 326/565 (57%), Gaps = 32/565 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           +I+  N+++ ++ + G++ EA ++F++MP++D V+W+ LIS Y Q++   +AL+ F  M+
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                 +E  + SV+ A A       G  +H   VK G +  +++ +AL+ +Y+      
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT------ 207

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    + G ++ A+ +FDA+  ++ VSW+ +I+G+A+   
Sbjct: 208 -------------------------RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             + L LF  M   G RP   +  S+  AC+    L+QGKW+HAY+ K+G K+ +  G T
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G + +A ++F    ++ V SWN+L+  +A +G   +++  F EM++ G+ PN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           EI+F+ VL AC H GL+DEG  H+  ++++  + P + HY  +VDLLGRAG L  A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           E MP+ P  A W ALL AC+ H + E+G      + EL PD  G HV+L NI+AS GRW+
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           D   VR  M   GV K P CS +E    IH F+A D  HPQ  EI    +E+  K+K  G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V   +DQ+E+E  L  HSEK+A+AF L+   P + I I KN+R+C DCHTA K
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 767 FISRAFDREIVVRDRHRFHHFKHGS 791
             S+   REI+VRD +RFHHFK  S
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 190/404 (47%), Gaps = 72/404 (17%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           LL + +  +L + +G+++H H+L++ F  D+ + NTL+NMYA CG L  ARK+F++ P  
Sbjct: 66  LLKKCTVFKL-LIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKM--------------------PER--------- 226
           D V+W ++++GY   D   +A   +N+M                     ER         
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 227 ----------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                     N+   ++++ L+ R G + +A  +F  +  ++ VSW+ALI+ + +    E
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           +AL LF  M+            S+  AC++   ++ G  VHA  +K G +      N L+
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+  G I  A K+FD     D++SWNS                               
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKRDVVSWNS------------------------------- 333

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           +++ YAQH    E +  F EM+  GIRP+E + +SV++AC+H   LD+G   +  ++K+G
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG 393

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +   +    T++D+  + G ++ AL        E   + W AL+
Sbjct: 394 IVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 35/321 (10%)

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           +  D     ++L  C    ++  G  VHA  ++      I + N L++MY+ CG +  A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           K+F+     D ++W ++I                               SGY+QHD+  +
Sbjct: 116 KVFEKMPQRDFVTWTTLI-------------------------------SGYSQHDRPCD 144

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L  F +M   G  P+E TL SVI A         G  +H +  K G   N  +G+ L+D
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
           +Y + G +D+A  VF   E +   SWNALI G A     +K+LE+F  M + G  P+  +
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           +  + GAC   G +++G      MI+   +L   + +   ++D+  ++G + +A ++ + 
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN--TLLDMYAKSGSIHDARKIFDR 322

Query: 589 MPMSPDVATWGALLGACKKHG 609
           +    DV +W +LL A  +HG
Sbjct: 323 LAKR-DVVSWNSLLTAYAQHG 342



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 146/333 (43%), Gaps = 45/333 (13%)

Query: 35  THLQKCQSFKQFTQ--ILSQMILTGLIA-DTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T L+KC  FK   Q  I+   IL  +   D    + L+          E     K+F  +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR---KVFEKM 121

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
              +   + T++  Y Q + P  A+  +  ML      + +T   + +A+A       G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H   +K GFDS+V+V + L+++Y   G +  A+ +FD     + VSWN+++AG+    
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 212 NVEEAKFIYNKMPERNI---------------------------------------IASN 232
             E+A  ++  M                                             A N
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ ++ + G++ +A ++F  + K+D+VSW++L++ Y Q+   +EA+  F  M    +  
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRP 361

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGI 325
           +E+  +SVL+AC++  ++  G   + L  K GI
Sbjct: 362 NEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  LES N   +N ++  + +R+  ++A+ L++ ML +     +++Y  L  A +    
Sbjct: 218 VFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGF 277

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +GK +H +++K+G     +  NTL++MYA  G +  ARK+FD     D+VSWNS+L  
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN---------------------------------- 232
           Y      +EA + + +M    I  +                                   
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPE 397

Query: 233 -----SMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALIS 267
                +++ L GR G++  A R  +EMP +   + W AL++
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 128/267 (47%), Gaps = 18/267 (6%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           I  D     +++  CT    L QG+ +HA+I ++  + + ++G TL++MY K G ++ A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           +VF    ++   +W  LI G++ +     +L  F++M + G +PNE T   V+ A     
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
               GH+  +    +   + N      ++DL  R G++ +A+ + +++    DV +W AL
Sbjct: 176 RGCCGHQ-LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-SWNAL 233

Query: 602 L-GACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMM 655
           + G  ++ G  +  E     L +  +P H  +  L     ++    +G+W     V   M
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW-----VHAYM 288

Query: 656 VRRG--VVKIPGCSMIE---ANGIIHE 677
           ++ G  +V   G ++++    +G IH+
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHD 315


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/641 (34%), Positives = 363/641 (56%), Gaps = 40/641 (6%)

Query: 167 YVNNTLINMYAVCGDLSAARKLFDES---PVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           YV  T++ +  +C +      L + +   P +    ++++L   ++   + + + ++  M
Sbjct: 19  YVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHM 78

Query: 224 PERNIIASN----SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
            +   + +      +++ +G+   + +A ++  EMP+K++VSW+A+IS Y Q     EAL
Sbjct: 79  IKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEAL 138

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            +F  M+      +E    +VL++C   + +  G  +H L VK   + +I + ++L+ MY
Sbjct: 139 TVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMY 198

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
           +                               K G +++AR +F+ + E+DVVS + +I+
Sbjct: 199 A-------------------------------KAGQIKEAREIFECLPERDVVSCTAIIA 227

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
           GYAQ     E L +F  +   G+ P+  T  S+++A + L  LD GK  H ++ +  L  
Sbjct: 228 GYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPF 287

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            ++L  +LIDMY K G +  A  +F    E+   SWNA+++G++ +GL  + LE+F  M+
Sbjct: 288 YAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMR 347

Query: 520 -KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ-EHRLEPNSKHYGCMVDLLGRAG 577
            +  V P+ +T + VL  C H  + D G   F+ M+  E+  +P ++HYGC+VD+LGRAG
Sbjct: 348 DEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAG 407

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            + EA E I+ MP  P     G+LLGAC+ H   ++GE VGR+L+E++P++ G +V+LSN
Sbjct: 408 RIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSN 467

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++AS GRW DV  VR MM+++ V K PG S I+    +H F A DRTHP+  E+   + E
Sbjct: 468 LYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKE 527

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           ++ K+K  GY PD   V +D+D+E+KE  L  HSEKLA+ FGLI      PIR+ KNLRI
Sbjct: 528 ISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRI 587

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCH  AK  S+ F+RE+ +RD++RFH    G CSC D+W
Sbjct: 588 CVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/531 (24%), Positives = 222/531 (41%), Gaps = 110/531 (20%)

Query: 89  AFLESPNGFIFNTMMR-AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           +F  SP  ++  T++  + +  N   Q   L   ML   +G   + Y  L  A   + ++
Sbjct: 11  SFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGF--HGYDALLNACLDKRAL 68

Query: 148 FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
            +G+ +H H++K  +    Y+   L+  Y  C  L  ARK+ DE P  ++VSW ++++ Y
Sbjct: 69  RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128

Query: 208 VNADNVEEAKFIYNKM------P---------------------------------ERNI 228
               +  EA  ++ +M      P                                 + +I
Sbjct: 129 SQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHI 188

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
              +S++ ++ + G + EA  +F+ +P++D+VS +A+I+ Y Q  + EEAL +F  +   
Sbjct: 189 FVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSE 248

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
            +  + V   S+L+A + L ++  G   H   ++  +  Y  LQN+LI MYS CG ++ A
Sbjct: 249 GMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYA 308

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            +LFD       ISWN+M+ G                               Y++H    
Sbjct: 309 RRLFDNMPERTAISWNAMLVG-------------------------------YSKHGLGR 337

Query: 409 ETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           E L LF  M+    ++PD  TL++V+S C+H    D G                      
Sbjct: 338 EVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTG---------------------- 375

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
                 L   D  +   +GT + G   +  ++    M G A +  E F  +K+    P  
Sbjct: 376 ------LNIFDGMVAGEYGT-KPGTEHYGCIV---DMLGRAGRIDEAFEFIKRMPSKPTA 425

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG 577
                +LGACR    VD G      +I+   +EP N+ +Y  + +L   AG
Sbjct: 426 GVLGSLLGACRVHLSVDIGESVGRRLIE---IEPENAGNYVILSNLYASAG 473



 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 60/377 (15%)

Query: 23  IFKPTINLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKF--STDLLP 77
           +  P +     +  L  C   ++ +   ++ + MI T  +  T+  +RL+ F    D L 
Sbjct: 45  MLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCL- 103

Query: 78  FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLL 137
                 + K+   +   N   +  M+  Y Q     +A+ ++  M+ ++   + +T+  +
Sbjct: 104 ----EDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATV 159

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             +      +  GK IH  ++K  +DS ++V ++L++MYA  G +  AR++F+  P  D+
Sbjct: 160 LTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDV 219

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNI----------------------------- 228
           VS  +I+AGY      EEA  +++++    +                             
Sbjct: 220 VSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCH 279

Query: 229 ----------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                     +  NS+I ++ + GN++ A RLF  MP++  +SW+A++  Y ++ +  E 
Sbjct: 280 VLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREV 339

Query: 279 LVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVH------ALAVKIGIECYINL 331
           L LF  M D  RV  D V +++VLS C++  +   G ++           K G E Y   
Sbjct: 340 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHY--- 396

Query: 332 QNALIHMYSSCGEITTA 348
              ++ M    G I  A
Sbjct: 397 -GCIVDMLGRAGRIDEA 412


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/763 (32%), Positives = 400/763 (52%), Gaps = 64/763 (8%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           D F A+ L+     L P   ++ + ++F  +   N   F T+++A+ QR   + A  L++
Sbjct: 95  DLFCANVLLNMYGKLGP---LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFR 151

Query: 121 LMLNNNVGVDNYTYP-LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
            +      V+ +    +L  A A+  +   G  +H    K G D + +V + LI+ Y++C
Sbjct: 152 RLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGG-VHSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA----------------------- 216
             +S A  +F+     D V W ++++ Y   D  E A                       
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCA 270

Query: 217 -KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
            K + +  P        +++ ++ + G++ +A   F+ +P  D++  S +IS Y Q+   
Sbjct: 271 IKTLNDTEPH----VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQN 326

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           E+A  LF+ ++   V+ +E  + SVL AC N+  +  G  +H  A+KIG           
Sbjct: 327 EQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG----------- 375

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
                               H  DL   N+++  Y KC  ++ +  +F ++ + + VSW+
Sbjct: 376 --------------------HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWN 415

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           T++ G++Q     E LS+F EMQ   +   + T  SV+ AC    ++     IH  I K+
Sbjct: 416 TIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKS 475

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
               ++++G +LID Y K G + +AL+VF    E+ + SWNA+I G+A++G A  +LE+F
Sbjct: 476 TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELF 535

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             M KS V  N+ITFV +L  C   GLV+ G   F+SM  +H ++P+ +HY C+V LLGR
Sbjct: 536 DRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGR 595

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG L +A + I  +P +P    W ALL +C  H +  +G     K++E++P  +  +VLL
Sbjct: 596 AGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLL 655

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           SN++A+ G  D V  +R  M   GV K+PG S +E  G IH F  G   HP +  I+ ML
Sbjct: 656 SNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAML 715

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
           + +  K   EGY PD   V  D+D+E+K   L+ HSE+LA+A+GL+   P +PIRI+KNL
Sbjct: 716 EWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNL 775

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R C DCHTA   IS+   REI+VRD +RFHHF+ G CSC D+W
Sbjct: 776 RSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/547 (23%), Positives = 242/547 (44%), Gaps = 109/547 (19%)

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS--DVYVNNTLINMYAVCGDLSAA 185
           GVD++      Q    R     G+ +H HV++ G     D++  N L+NMY   G L++A
Sbjct: 56  GVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASA 115

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
           R+LFD  P  ++VS+ +++  +    + E A  ++ ++                      
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             + N    + +I  +     V++A  +F  + +KD V W+A++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           SCY +N+  E A                        +C+ L +  A   +H  A+K   +
Sbjct: 236 SCYSENDCPENAF-------------------RCAQSCSLLAISCARQGIHGCAIKTLND 276

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
              ++  AL+ MY+ CG+I                               + AR  F+ +
Sbjct: 277 TEPHVGGALLDMYAKCGDI-------------------------------KDARLAFEMI 305

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
              DV+  S MIS YAQ +Q  +   LF+ +    + P+E +L SV+ ACT++V LD GK
Sbjct: 306 PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGK 365

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH +  K G + +  +G  L+D Y K   +D++L++F    +    SWN +++GF+ +G
Sbjct: 366 QIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 425

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGAC------RHMGLVDEGHRHFNSMIQEHRLE 560
           L +++L +F EM+ + +   ++T+  VL AC      RH G         +  I++    
Sbjct: 426 LGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG-------QIHCSIEKSTFN 478

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH----EMGER 616
            ++     ++D   + G +++A ++ + + M  D+ +W A++     HG      E+ +R
Sbjct: 479 NDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDR 537

Query: 617 VGRKLVE 623
           + +  VE
Sbjct: 538 MNKSNVE 544



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 33  LETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           L + LQ C +  Q     QI +  I  G  +D F  + L+ F        +M  S KIF+
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKC---NDMDSSLKIFS 404

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            L   N   +NT++  + Q  + ++A+ ++  M    +     TY  + +A A   S+  
Sbjct: 405 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRH 464

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
              IH  + K+ F++D  + N+LI+ YA CG +  A K+F      D++SWN+I++GY  
Sbjct: 465 AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYAL 524

Query: 210 ADNVEEAKFIYNKMPERNI 228
                +A  ++++M + N+
Sbjct: 525 HGQAADALELFDRMNKSNV 543


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/838 (30%), Positives = 418/838 (49%), Gaps = 100/838 (11%)

Query: 22  PIFKPTINLS-ILETHLQK-------CQSFKQFTQILSQ--MILTGLIADTFAASRLIKF 71
           P  KP++N + +++ H+ K       C+S  Q    L +  ++    + D   A   I  
Sbjct: 18  PAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISL 77

Query: 72  S---TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVG 128
           +   +  L F ++S + ++F  +       +  ++  Y+Q N  ++A  LY  M    + 
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 129 VDNYTYPLLAQASALRLSVFEGKL--------IHDHVLKAGFDSDVYVNNTLINMYAVCG 180
            D  T   L       LS F G+L        IH HV+K G++ ++ V N+L++ Y    
Sbjct: 138 PDYVTLVTL-------LSGF-GELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA------------------------ 216
            L  A +LF      D V++NS++ GY N    EEA                        
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 217 ---------------KFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                           F+       N+   N+++  + +   V E  +LF EMP+ D +S
Sbjct: 250 AAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGIS 309

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           ++ +I+ Y  N  ++E+  LF  +   R    +    ++LS   +   ++ G  +H  A+
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
            +G      ++NAL+ MY+                               KC   ++A+ 
Sbjct: 370 TVGANFESRVENALVDMYA-------------------------------KCNGDKEAQK 398

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +FD +  K  V W+ MIS Y Q  +  E +++F +M+  G+  D+AT  S++ AC +L +
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           +  G+ +H+ + ++G   N   G+ L+D Y K GC+ +A++ F    E+   SWNALI  
Sbjct: 459 ISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISA 518

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +A NG  D +L  F +M +SG  P+ ++F+ VL AC H G V+E   HFNSM Q + + P
Sbjct: 519 YAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTP 578

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HY  MVD+L R G   EAE+L+  MP  P    W ++L +C+ H +HE+ ++   +L
Sbjct: 579 KREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRL 638

Query: 622 VELQPDHDGF-HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
             ++   D   ++ +SNI+A  G+WD+V +V+  M  RGV K+P  S +E     H F A
Sbjct: 639 FNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSA 698

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            D++HP++ +I   ++ ++K+++ +GY PDT     D+D+  K  +L  HSE+ AIAF L
Sbjct: 699 NDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFAL 758

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +     +PI +MKNLR C DCH A K IS+  +REI+VRD  RFHHFK G CSC D+W
Sbjct: 759 MNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/573 (22%), Positives = 235/573 (41%), Gaps = 105/573 (18%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVL 195
           +L  + A + S+    LI  H++K GF+ +   +N  +N +   GDL  A ++FD+ P  
Sbjct: 13  VLRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAK 72

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           + +S N +++G++        KF                       G +++A  LF  M 
Sbjct: 73  NTISLNMMISGHL--------KF-----------------------GKLSKARELFDGMV 101

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           ++  VSW+ LI  Y Q+   +EA  L+ +M    +  D V +V++LS    L        
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   +K+G E  + + N+L+  Y     +  A +LF    N D +++NS+++GY   G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 376 VEKA-------------------RALFDAMIEKDVVSWSTMISG---------------- 400
            E+A                    AL  A +  D   +   + G                
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 401 ----YAQHDQ-------------------------------FSETLSLFMEMQHHGIRPD 425
               Y++HDQ                               F E+  LF ++Q       
Sbjct: 282 LLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           +    +++S  T  + L  G+ IH      G    S +   L+DMY K      A ++F 
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K    W A+I  +   G  ++ + +FS+M+++GV  ++ TF  +L AC ++  +  
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G R  +S++       N      ++D   + G + +A +    MP    V +W AL+ A 
Sbjct: 462 G-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV-SWNALISAY 519

Query: 606 KKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
            ++G+ +      +++++   +PD   F  +LS
Sbjct: 520 AQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/778 (32%), Positives = 404/778 (51%), Gaps = 75/778 (9%)

Query: 61  DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYK 120
           D F A+ L+     L P   ++ + ++F  +   N   F T+++A+ QR   + A  L++
Sbjct: 95  DLFCANVLLNMYGKLGP---LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFR 151

Query: 121 LMLNNNVGVDNYTYP-LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
            +      V+ +    +L  A A+  +   G  +H    K G D + +V + LI+ Y++C
Sbjct: 152 RLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGG-VHSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS-- 231
             +S A  +F+     D V W ++++ Y   D  E A  +++KM      P    + S  
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270

Query: 232 -------------------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                           +++ ++ + G++ +A   F+ +P  D++
Sbjct: 271 KAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVI 330

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
             S +IS Y Q+   E+A  LF+ ++   V+ +E  + SVL AC N+  +  G  +H  A
Sbjct: 331 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           +KIG                               H  DL   N+++  Y KC  ++ + 
Sbjct: 391 IKIG-------------------------------HESDLFVGNALMDFYAKCNDMDSSL 419

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +F ++ + + VSW+T++ G++Q     E LS+F EMQ   +   + T  SV+ AC    
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           ++     IH  I K+    ++++G +LID Y K G + +AL+VF    E+ + SWNA+I 
Sbjct: 480 SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 539

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G+A++G A  +LE+F  M KS V  N+ITFV +L  C   GLV+ G   F+SM  +H ++
Sbjct: 540 GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIK 599

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
           P+ +HY C+V LLGRAG L +A + I  +P +P    W ALL +C  H +  +G     K
Sbjct: 600 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEK 659

Query: 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
           ++E++P  +  +VLLSN++A+ G  D V  +R  M   GV K+PG S +E  G IH F  
Sbjct: 660 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 719

Query: 681 GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
           G   HP +  I+ ML+ +  K   EGY PD   V  D+D+E+K   L+ HSE+LA+A+GL
Sbjct: 720 GSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGL 779

Query: 741 ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +   P +PIRI+KNLR C DCHTA   IS+   REI+VRD +RFHHF+ G CSC D+W
Sbjct: 780 VMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/547 (24%), Positives = 248/547 (45%), Gaps = 90/547 (16%)

Query: 128 GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDS--DVYVNNTLINMYAVCGDLSAA 185
           GVD++      Q    R     G+ +H HV++ G     D++  N L+NMY   G L++A
Sbjct: 56  GVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASA 115

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP--------------------- 224
           R+LFD  P  ++VS+ +++  +    + E A  ++ ++                      
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             + N    + +I  +     V++A  +F  + +KD V W+A++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           SCY +N+  E A  +F  M       +   + SVL A   L  V  G  +H  A+K   +
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLND 295

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
              ++  AL+ MY+ CG+I                               + AR  F+ +
Sbjct: 296 TEPHVGGALLDMYAKCGDI-------------------------------KDARLAFEMI 324

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
              DV+  S MIS YAQ +Q  +   LF+ +    + P+E +L SV+ ACT++V LD GK
Sbjct: 325 PYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGK 384

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IH +  K G + +  +G  L+D Y K   +D++L++F    +    SWN +++GF+ +G
Sbjct: 385 QIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSG 444

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGAC------RHMGLVDEGHRHFNSMIQEHRLE 560
           L +++L +F EM+ + +   ++T+  VL AC      RH G         +  I++    
Sbjct: 445 LGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG-------QIHCSIEKSTFN 497

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH----EMGER 616
            ++     ++D   + G +++A ++ + + M  D+ +W A++     HG      E+ +R
Sbjct: 498 NDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDR 556

Query: 617 VGRKLVE 623
           + +  VE
Sbjct: 557 MNKSNVE 563



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 10/229 (4%)

Query: 33  LETHLQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           L + LQ C +  Q     QI +  I  G  +D F  + L+ F        +M  S KIF+
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKC---NDMDSSLKIFS 423

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            L   N   +NT++  + Q  + ++A+ ++  M    +     TY  + +A A   S+  
Sbjct: 424 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRH 483

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
              IH  + K+ F++D  + N+LI+ YA CG +  A K+F      D++SWN+I++GY  
Sbjct: 484 AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYAL 543

Query: 210 ADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM 254
                +A  ++++M + N+ +++    +++ +    G V     LF  M
Sbjct: 544 HGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSM 592


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 326/556 (58%), Gaps = 4/556 (0%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+ + +  ++   W+A+I  Y     ++EA+ ++  M    +        ++L AC  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           +  +  G   HA   ++   C++ + N +I MY  C  I  A K+FD     D+ISW  +
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I+ Y + G++E A  LF+++  KD+V+W+ M++G+AQ+ +  E L  F  M+  GIR DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS--ILGTTLIDMYMKLGCVDNALEVF 484
            T+   ISAC  L A           +K+G   +   ++G+ LIDMY K G V+ A+ VF
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 341

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLV 543
                K V +++++I+G A +G A ++L +F  M  ++ + PN +TFVG L AC H GLV
Sbjct: 342 MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLV 401

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           D+G + F+SM Q   ++P   HY CMVDLLGR G L+EA ELI++M + P    WGALLG
Sbjct: 402 DQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLG 461

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC+ H + E+ E     L EL+PD  G ++LLSN++AS G W  VL VR ++  +G+ K 
Sbjct: 462 ACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKT 521

Query: 664 PGCS-MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
           P  S +++ NG +H+F  G+  HP  N+I + L+E+ ++L + GY PD   V +D+    
Sbjct: 522 PAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNA 581

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           K   L +H+EKLA+AF L+T +  + I IMKNLR+C DCH   +  S    + I++RD  
Sbjct: 582 KRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNM 641

Query: 783 RFHHFKHGSCSCMDFW 798
           RFHHF+ G CSC DFW
Sbjct: 642 RFHHFRSGDCSCGDFW 657



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 204/474 (43%), Gaps = 66/474 (13%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFA 89
           +S L + L  C +  Q  QI   ++  GL    +  ++LI+  T L   ++  Y+ ++  
Sbjct: 49  VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMD-PYARRVIE 107

Query: 90  FLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFE 149
            ++  N F++  ++R Y       +AI +Y  M    +   ++T+  L +A      +  
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           G+  H    +      VYV NT+I+MY  C  +  ARK+FDE P  D++SW  ++A Y  
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYAR 227

Query: 210 ADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY 269
             N+E A  ++  +P ++++A  +M+  F                               
Sbjct: 228 VGNMECAAELFESLPTKDMVAWTAMVTGFA------------------------------ 257

Query: 270 EQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIEC-- 327
            QN   +EAL  F  M    +  DEV V   +SACA L   K       +A K G     
Sbjct: 258 -QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 316

Query: 328 YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387
           ++ + +ALI MYS CG +  A  +F + +N ++ +++SMI G    G  ++A  LF  M+
Sbjct: 317 HVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMV 376

Query: 388 EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447
            +                                I+P+  T V  + AC+H   +DQG+ 
Sbjct: 377 TQT------------------------------EIKPNTVTFVGALMACSHSGLVDQGRQ 406

Query: 448 IHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHG-TEEKGVSSWNALI 499
           +   + +  G++      T ++D+  + G +  ALE+    + E     W AL+
Sbjct: 407 VFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALL 460



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN--ALEV 483
           E  + S+IS     + L+Q K IH ++ + GL  +  + T LI    KLG   +  A  V
Sbjct: 46  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRV 105

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
               + +    W A+I G+A+ G  D+++ M+  M+K  +TP   TF  +L AC  M  +
Sbjct: 106 IEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDL 165

Query: 544 DEGHRHFNSMIQEHRLEPNSKHY--GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
           + G R F++  Q  RL      Y    M+D+  +   +  A ++ + MP   DV +W  L
Sbjct: 166 NLG-RQFHA--QTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTEL 221

Query: 602 LGACKKHGDHEMGERVGRKLVELQPDHD 629
           + A  + G+ E       +L E  P  D
Sbjct: 222 IAAYARVGNME----CAAELFESLPTKD 245


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/502 (42%), Positives = 320/502 (63%), Gaps = 5/502 (0%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALI 336
           AL LF +++      D       L++CA          +HA A K G +  +  ++  L+
Sbjct: 62  ALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRLV 121

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLK-CGSVEKARALFDAMIEKDVVSWS 395
           H Y+ CG +  A ++FD G + D+++WN ++ GY +  G  +  R  F  M  +D VSW+
Sbjct: 122 HAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWN 181

Query: 396 TMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           T++S    + ++ E +++F EM      +PD  TLVSV+SA  +L AL QG W HAY+ +
Sbjct: 182 TVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIR 241

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLE 513
            G+++   L + LI+MY K G ++ A+ VF     ++ + +WNA++ GF  NG + ++L 
Sbjct: 242 KGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRALA 301

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F+ M+ +G+ PN+ITF  +L AC H GLV+EG R F  M + + +EP+  HYGCMVDL 
Sbjct: 302 LFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLF 361

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
            RAGM ++AEE+I+ MPM PD +   ALLGAC+ H + E+G++ G +L+E  P+    +V
Sbjct: 362 CRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYV 421

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A  G W  V +VR +M+ RGV+K PG S +E NG+IHEF++GD++H +  +I  
Sbjct: 422 LLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYK 481

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIM 752
           MLDE+ ++LK  GY PDT +V  DID E+ KE++L  HSEKLAIAFGLI+ +P  PIR++
Sbjct: 482 MLDEICQQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVV 541

Query: 753 KNLRICNDCHTAAKFISRAFDR 774
            NLRIC DCH A K +S+ + R
Sbjct: 542 NNLRICGDCHNAIKLLSKIYGR 563



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 165/381 (43%), Gaps = 71/381 (18%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNN 170
           P  A+ L+  +L +    D   Y L   + A          +H H  K GF  S   V  
Sbjct: 59  PHLALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRC 118

Query: 171 TLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA 230
            L++ YAVCG L  AR++FD     D+V+WN +L GY                       
Sbjct: 119 RLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYA---------------------- 156

Query: 231 SNSMIVLFGRKGNVAEACR-LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DH 288
                    ++G  A+  R  F  MP +D VSW+ ++S    N  Y+EA+ +F  M+   
Sbjct: 157 ---------QEGGDADLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQ 207

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
               D V +VSV+SA A L  +  G   HA  ++ G+E    L +ALI+MYS CG +  A
Sbjct: 208 ECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGA 267

Query: 349 EKLFD---AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             +FD      +LD  +WN+M++G+   G   +A                          
Sbjct: 268 VYVFDNVRGKRSLD--TWNAMLAGFTANGCSGRA-------------------------- 299

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILG 464
                L+LF  M+  G+ P++ T   +++AC+H   +++G +      R  G++ +    
Sbjct: 300 -----LALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHY 354

Query: 465 TTLIDMYMKLGCVDNALEVFH 485
             ++D++ + G  + A E+  
Sbjct: 355 GCMVDLFCRAGMFEKAEEIIQ 375



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 18/230 (7%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML-NNNVGVDNYTYPLLAQASALRLS 146
           FA + S +   +NT++   +      +AI +++ ML +     D  T   +  A A   +
Sbjct: 169 FARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGA 228

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILA 205
           + +G   H +V++ G + +  +++ LINMY+ CG L  A  +FD       L +WN++LA
Sbjct: 229 LAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLA 288

Query: 206 GYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEACRLFKEMPK----- 256
           G+        A  ++ +M       N I  N ++      G V E  R F+ M +     
Sbjct: 289 GFTANGCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIE 348

Query: 257 KDLVSWSALISCYEQNEMYEEA--LVLFMNMIDHRVMVDEVVVVSVLSAC 304
            D+  +  ++  + +  M+E+A  ++  M M       D  ++ ++L AC
Sbjct: 349 PDIAHYGCMVDLFCRAGMFEKAEEIIQIMPM-----EPDASMLKALLGAC 393


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/433 (46%), Positives = 279/433 (64%)

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           M++G+ + G V   + LFD M E+DV+SW+TM+  Y  + +  E L  F  M+  G+ PD
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           EATLV+++SA   L  L+ G+ IH+ I    L +   +GT L+DMY K GC++ +  +F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               + VS+WN +I G A +GL   +L +F      G+ P  +TFVGVL AC   GLV E
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G  +F  M   + +EP  +HYGCMVDLLGRAG++ EA ++IESM +SPD   W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           + HG  E+GE++G +L+EL P +DG +V L++I+A+  +W+DV+ VR +M  R   K+ G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S+IEA G +H F+AG R H Q  EI  ML+ +  +L   GY P+   V  DI +EEKE 
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            +  HSE+LAIAFGL+   P + IRI+KNLR+C DCH   K ISR F+REI+VRD  RFH
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 786 HFKHGSCSCMDFW 798
           HFK G CSC+D+W
Sbjct: 421 HFKEGKCSCLDYW 433



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 70/335 (20%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           M+  F R G V+   +LF EMP++D++SW+ ++  Y  N    EAL  F  M +  ++ D
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E  +V++LSA A L +++ G S+H++   + +   I++  AL+ MY+ CG I  +  LF+
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                D+ +WN                                MI G A H    + L+L
Sbjct: 121 NMPRRDVSTWN-------------------------------VMICGLASHGLGKDALTL 149

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILGTTLIDMYM 472
           F    + G+ P   T V V++AC+    + +G+ +        G++        ++D+  
Sbjct: 150 FERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLG 209

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           + G V  A++V                                  ++   ++P+ + +  
Sbjct: 210 RAGLVFEAIKV----------------------------------IESMAISPDPVLWAM 235

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHY 566
           VL ACR  GL + G +  N +I+   L+P    HY
Sbjct: 236 VLCACRIHGLAELGEKIGNRLIE---LDPTYDGHY 267



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 41/256 (16%)

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMI 235
           +A  G +S  +KLFDE P  D++SWN++L  YV+   + EA   + +M E  ++   + +
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 236 V---------------------------------------LFGRKGNVAEACRLFKEMPK 256
           V                                       ++ + G + ++  LF+ MP+
Sbjct: 65  VTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPR 124

Query: 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           +D+ +W+ +I     + + ++AL LF   ++  +    V  V VL+AC+   +VK G   
Sbjct: 125 RDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHY 184

Query: 317 HALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCG 374
             +     GIE  +     ++ +    G +  A K+ ++   + D + W  ++      G
Sbjct: 185 FQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHG 244

Query: 375 SVEKARALFDAMIEKD 390
             E    + + +IE D
Sbjct: 245 LAELGEKIGNRLIELD 260



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 138/348 (39%), Gaps = 50/348 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           ++S   K+F  +   +   +NTM+ AY+      +A+  +K M  + +  D  T   +  
Sbjct: 10  QVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLS 69

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           ASA    +  G+ IH  +        + +   L++MYA CG +  +R LF+  P  D+ +
Sbjct: 70  ASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVST 129

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMP 255
           WN ++ G  +    ++A  ++ +     +   N   V       R G V E    F+ M 
Sbjct: 130 WNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMT 189

Query: 256 -----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
                + ++  +  ++    +  +  EA+ +  +M    +  D V+   VL AC      
Sbjct: 190 DSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMA---ISPDPVLWAMVLCAC------ 240

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
                +H LA     E    + N LI +          +  +D GH + L    S+ +  
Sbjct: 241 ----RIHGLA-----ELGEKIGNRLIEL----------DPTYD-GHYVQL---ASIYANS 277

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTM---------ISGYAQHDQFSE 409
            K   V + R L        V  WS +         ++G+ +H+Q  E
Sbjct: 278 RKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFVAGHREHEQSLE 325


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/676 (34%), Positives = 379/676 (56%), Gaps = 43/676 (6%)

Query: 28  INLSILETHLQKCQSFKQFTQILSQMILTGLIADT-FAASRLIKFSTDLLPFIEMSYSFK 86
           +N S++   L++C+S K  T I + ++++G IA +    ++L++  +    F  +SY+ K
Sbjct: 1   MNHSLISKLLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYS---KFGAVSYAHK 57

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F     PN F++  ++  + + N  + A   +  M   N+   N+T   + +A +    
Sbjct: 58  LFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGR 117

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + +G L++   ++ G++ D+ V N +I ++  CG++ +AR++FDE    D VSWNS++ G
Sbjct: 118 IKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITG 177

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y N   V+ A+ ++++M ERN+I+  SMI  + + G++ EA  LF+ MP+KDL SW  ++
Sbjct: 178 YGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMV 237

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           S Y        A  LF  M  H V                      GT            
Sbjct: 238 SAYMSVGNLVAARNLFELMPIHDV----------------------GT------------ 263

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
                 N +I      GE+  A++ FD     ++ SW  +I GY+K G V+ AR++FD M
Sbjct: 264 -----WNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQM 318

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
            EK++V+WSTMI GYA+      +L L+   +  GI+PDE   + +ISAC+ L   D  +
Sbjct: 319 PEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAE 378

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +        L  N  + T+LIDMY K G ++ A++VF   ++K +  ++ +I  FA +G
Sbjct: 379 SVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHG 438

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L++ ++ +FSEM+K+ + P+ + F+GVL AC H GLV EG R F  MI E+ ++P+ KHY
Sbjct: 439 LSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHY 498

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMVD+LGRAG L+EA  LI SMP++P+   WGALL AC+ H + ++ E    +L +++P
Sbjct: 499 ACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATELFQIEP 558

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
           ++ G +VLL NI+A  G+WDD  +VR M+    V K  G S IE   +IHEF+ GD++H 
Sbjct: 559 NNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVMGDKSHF 618

Query: 687 QINEIDNMLDEMAKKL 702
               I  ML+ + K +
Sbjct: 619 DSERIFFMLELLCKDM 634


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/492 (42%), Positives = 298/492 (60%), Gaps = 35/492 (7%)

Query: 247 ACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           A  L  ++   +L  ++A+I      N    E LV++  M+   ++ D   +  VL ACA
Sbjct: 92  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 151

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
               V+ G  VH  A+K+G+   + + N L+ MY+ C  I +A K+FD     DL+SW +
Sbjct: 152 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 211

Query: 366 MISGY----------------------------------LKCGSVEKARALFDAMIEKDV 391
           MI GY                                  LKCG    AR +F  M  K+V
Sbjct: 212 MIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNV 271

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           VSW++MISG AQ  QF E+L +F +MQ  G++PD+ TLV+V+++C +L  L+ GKW+HAY
Sbjct: 272 VSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAY 331

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
           + +N ++ +  +G  L+DMY K G +D A  VF     K V S+ A+I+G AM+G   K+
Sbjct: 332 LDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKA 391

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           L++FSEM K G+ P+E+TFVGVL AC H+GLV+EG ++F  M   + L P  +HYGCMVD
Sbjct: 392 LDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVD 451

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
           LLGRAG++ EAEE I +MP+ PD    GALLGACK HG  E+GE V +K+ +++P  DG 
Sbjct: 452 LLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGA 511

Query: 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEI 691
           +VL+SNI++S  RW D L++R  M  R + K PGCS IE +G+IHEF  GD++HP+I EI
Sbjct: 512 YVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEI 571

Query: 692 DNMLDEMAKKLK 703
             +LDE+   LK
Sbjct: 572 YKLLDEIMSHLK 583



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 174/567 (30%), Positives = 278/567 (49%), Gaps = 76/567 (13%)

Query: 30  LSILETHLQKCQSFKQFTQILSQMILTGLIADT--FAASRLIKFSTDLLPFIEMSYSFKI 87
           LS L T LQ C+S K   QI + +I T    D     ++RL       LP I+  Y+  +
Sbjct: 38  LSFLST-LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLP-IDPRYALSL 95

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQ-QAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
            A L +PN  ++N ++R     N    + + +YK ML+  +  DNYT P + +A A   +
Sbjct: 96  LAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRA 155

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           V EG+ +H   +K G  SDVYV+NTL+ MYAVC  + +ARK+FD SP  DLVSW +++ G
Sbjct: 156 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQG 215

Query: 207 YVNADNVEEAKFIY---NKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           YV      E   +Y   N     ++   N+++ ++ + G+   A ++F+EMP K++VSW+
Sbjct: 216 YVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 275

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           ++IS   Q   ++E+L +F  M    V  D+V +V+VL++CANL V++ G  VHA   + 
Sbjct: 276 SMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN 335

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
            I     + NAL+ MY+ CG I  A  +F A +  D+ S+ +MI                
Sbjct: 336 QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMI---------------- 379

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                           G A H Q  + L LF EM   GI PDE T V V++AC+H+  ++
Sbjct: 380 ---------------VGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVE 424

Query: 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFA 503
           +G       RK    +++I    L       GC+ +                   ++G A
Sbjct: 425 EG-------RKYFEDMSTIY--NLRPQLEHYGCMVD-------------------LLGRA 456

Query: 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS 563
             GL +++ E    M    + P+      +LGAC+  G V+ G    + M +  ++EP  
Sbjct: 457 --GLINEAEEFIRNMP---IEPDAFVLGALLGACKIHGKVELGE---SVMKKIEKIEPRK 508

Query: 564 K-HYGCMVDLLGRAGMLKEAEELIESM 589
              Y  M ++   A   ++A +L ++M
Sbjct: 509 DGAYVLMSNIYSSANRWRDALKLRKTM 535


>gi|357158917|ref|XP_003578281.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 547

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 314/525 (59%), Gaps = 36/525 (6%)

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           AL LF +++      D +     L+ CA          +H  A K G   +  + N LIH
Sbjct: 55  ALRLFDHLLRSGADPDPIAYALALARCARERAYPVAAQLHGHAAKRGASSHRRVSNGLIH 114

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
            Y+ CG +  A K+FD    +D+I+WN ++ GY +       R  F  M  +D VSW+T+
Sbjct: 115 AYAVCGMLFDARKVFDYVPEVDMIAWNCLLRGYAQVWDARTLRDFFSRMPARDSVSWNTV 174

Query: 398 ISGYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           I+    + ++ E +++F EM      +PD  TLVS+ISA  +L AL QG W HAY+ + G
Sbjct: 175 IACCIVNGEYEEAIAVFQEMLACQECQPDRVTLVSIISAIAYLGALAQGFWAHAYVCRKG 234

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMF 515
           +++   L + LI+MY K G ++ A+ VF  +   + V +WNA+I GF  NG ++++LE+F
Sbjct: 235 IEVEEKLSSALINMYSKCGFIEGAVYVFENSCAMRSVDTWNAMITGFTANGCSERALELF 294

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
           + M+ +G  PN+ITF  VL AC H G V+EG                             
Sbjct: 295 TRMESTGFVPNKITFNSVLNACSHGGFVEEG----------------------------- 325

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP-DHDGFHVL 634
             + ++AE +++ MPM PD + W AL+GAC+ + + ++G++ GR+L+E  P DH G+ VL
Sbjct: 326 --LFEKAEVIMQMMPMEPDASVWKALVGACRTYKNFKLGKKAGRRLIEAAPNDHTGY-VL 382

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNI+A  G W  V  VR  M   GV K+PG S IE +G+IHEF++GD++H +  ++  M
Sbjct: 383 LSNIYALDGNWKGVHNVRKRMFDSGVQKVPGSSSIEVDGVIHEFISGDKSHSRKKDVYEM 442

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEE-KETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
           L E+ ++LK+ GYAPDT +V  DID E+ KE++L  HSEKLAIAFGLI+ +P  PIR++K
Sbjct: 443 LGEICQQLKIAGYAPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVK 502

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C DCH A K +S+ + R I+VRD +RFH F  GSCSC D+W
Sbjct: 503 NLRVCGDCHNAIKLLSKIYGRSIIVRDANRFHCFSEGSCSCRDYW 547



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 64/336 (19%)

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
           P  A+ L+  +L +    D   Y L     A   +      +H H  K G  S   V+N 
Sbjct: 52  PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPVAAQLHGHAAKRGASSHRRVSNG 111

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS 231
           LI+ YAVCG L  ARK+FD  P +D+++WN +L GY    +    +  +++MP R+ ++ 
Sbjct: 112 LIHAYAVCGMLFDARKVFDYVPEVDMIAWNCLLRGYAQVWDARTLRDFFSRMPARDSVSW 171

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRV 290
           N++                               I+C   N  YEEA+ +F  M+     
Sbjct: 172 NTV-------------------------------IACCIVNGEYEEAIAVFQEMLACQEC 200

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             D V +VS++SA A L  +  G   HA   + GIE    L +ALI+MYS CG I  A  
Sbjct: 201 QPDRVTLVSIISAIAYLGALAQGFWAHAYVCRKGIEVEEKLSSALINMYSKCGFIEGAVY 260

Query: 351 LFDAGHNLDLI-SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +F+    +  + +WN+MI+G+   G  E+A                              
Sbjct: 261 VFENSCAMRSVDTWNAMITGFTANGCSERA------------------------------ 290

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
            L LF  M+  G  P++ T  SV++AC+H   +++G
Sbjct: 291 -LELFTRMESTGFVPNKITFNSVLNACSHGGFVEEG 325


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/545 (40%), Positives = 326/545 (59%), Gaps = 32/545 (5%)

Query: 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313
           M  +D+ SW++LI+ Y QN+M +EAL L + M+  R   +     S+L A         G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKC 373
             +HAL VK      + + +AL+ MY+                               +C
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYA-------------------------------RC 89

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI 433
           G ++ A A+FD +  K+ VSW+ +I+G+A+      TL +F EMQ +G      T  SV 
Sbjct: 90  GRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 149

Query: 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS 493
           SA   + AL+QGKW+HA++ K+G ++++ +G T++DMY K G + +A +VF   ++K + 
Sbjct: 150 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLV 209

Query: 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553
           +WN+++  FA  GL  +++  F EM+K GV  N+ITF+ +L AC H GLV EG ++F+ M
Sbjct: 210 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-M 268

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
           ++EH LEP   HY  +VDLLGRAG+L +A   I  MPM P  A WGALLG+C+ H + ++
Sbjct: 269 MKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKI 328

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           G+     + EL PD  G  VLL NI+AS G+WD    VR MM   GV K P CS +E   
Sbjct: 329 GQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIEN 388

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
            +H F+A D THP+  EI    +E++ +++  GY P+T  V   +D++E++  L  HSEK
Sbjct: 389 SVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEK 448

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           +A+AF LI +     IRIMKN+RIC DCH+A ++IS+ F+REIVVRD +RFHHF  GSCS
Sbjct: 449 IALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCS 508

Query: 794 CMDFW 798
           C D+W
Sbjct: 509 CGDYW 513



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 127/254 (50%), Gaps = 39/254 (15%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++  Y Q ++P +A+ L   ML      + +T+  L +A+    S   G+ IH   +
Sbjct: 9   WTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 68

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN------ 212
           K  +  DVYV + L++MYA CG +  A  +FD+    + VSWN+++AG+    +      
Sbjct: 69  KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 128

Query: 213 -----------------------------VEEAKFIYNKM---PER-NIIASNSMIVLFG 239
                                        +E+ K+++  M    ER +    N+++ ++ 
Sbjct: 129 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 188

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G++ +A ++F  + KKDLV+W+++++ + Q  +  EA+  F  M    V ++++  +S
Sbjct: 189 KSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 248

Query: 300 VLSACANLTVVKAG 313
           +L+AC++  +VK G
Sbjct: 249 ILTACSHGGLVKEG 262



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 147/344 (42%), Gaps = 71/344 (20%)

Query: 196 DLVSWNSILAGYVNADNVEEAK---------------FIYNKMPER-------------- 226
           D+ SW S++AGY   D  +EA                F +  + +               
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 64

Query: 227 ----------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                     ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALI+ + +    E
Sbjct: 65  ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 124

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
             L++F  M  +          SV SA A +  ++ G  VHA  +K G      + N ++
Sbjct: 125 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 184

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            MY+  G +  A K+FD     DL++WNS                               
Sbjct: 185 DMYAKSGSMIDARKVFDHVDKKDLVTWNS------------------------------- 213

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           M++ +AQ+    E ++ F EM+  G+  ++ T +S+++AC+H   + +GK     ++++ 
Sbjct: 214 MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHN 273

Query: 457 LKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALI 499
           L+       T++D+  + G +++AL  +F    +   + W AL+
Sbjct: 274 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
            M  +  +F  LES NG  +N ++  + ++   +  + ++  M  N     ++TY  +  
Sbjct: 91  RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 150

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           A A   ++ +GK +H H++K+G     +V NT+++MYA  G +  ARK+FD     DLV+
Sbjct: 151 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVT 210

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           WNS+L  +       EA   + +M +     N I   S++      G V E  + F  M 
Sbjct: 211 WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK 270

Query: 256 KKDL 259
           + +L
Sbjct: 271 EHNL 274


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 345/604 (57%), Gaps = 17/604 (2%)

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
           D+V  NSIL  Y+     E A+  +  M E+++++ N MI  + R+G+V ++  +F+  P
Sbjct: 168 DVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFP 227

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            KD+VSW+ +I    Q      AL     M+ H      V     L   ++L++V+ G  
Sbjct: 228 NKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQ 287

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H   +  G+     ++++L+ MY  CG +  A  +      L  +  N +  G      
Sbjct: 288 LHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTI------LKDVPLNFLRKGNFGVTC 341

Query: 376 VE-KARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434
            E KAR          +VSWS+M+SGY  + ++ + +  F  M    I  D  T+ ++IS
Sbjct: 342 KEPKAR----------MVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIIS 391

Query: 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS 494
           AC +   L+ GK IHAYI+K GL+I++ +G++LIDMY K G +D+AL +F   +E  V  
Sbjct: 392 ACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVL 451

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           W ++I G A++G   +++ +F  M   G+ PNE+TFVGVL AC H+GL++EG R+F  M 
Sbjct: 452 WTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMK 511

Query: 555 QEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614
             + + P  +HY  MV+L GRAG L EA+  I    +S   + W + L +C+ H +  MG
Sbjct: 512 DTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMG 571

Query: 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674
           + V   L++  P     ++LLSN+ +S  +WD+   VR +M +RGV K PG S ++    
Sbjct: 572 KSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQ 631

Query: 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKL 734
           IH F  GDR+HPQ  EI + LD +  +LK  GY+ D   V  D+++E+ E  +  HSEKL
Sbjct: 632 IHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKL 691

Query: 735 AIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
           A+ F +I  SP  PIRIMKNLRICNDCH   K+ S+  +REI+VRD HRFHHFK  SCSC
Sbjct: 692 ALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSC 751

Query: 795 MDFW 798
            ++W
Sbjct: 752 GEYW 755



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 188/398 (47%), Gaps = 19/398 (4%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE-ALVLFMNMIDH 288
           ++N ++ L+ +  N+  A +LF E+  K+  +W+ LIS + +     E    LF  M   
Sbjct: 69  SANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQAD 128

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
               ++  + SVL  C+    ++ G  +HA  ++ G+   + L+N+++ +Y  C E   A
Sbjct: 129 GACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYA 188

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
           E  F+     D++SWN MI  YL+ G VEK+  +F     KDVVSW+T+I G  Q     
Sbjct: 189 ESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYER 248

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
             L     M  HG      T    +   + L  ++ G+ +H  +   GL  +  + ++L+
Sbjct: 249 LALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLV 308

Query: 469 DMYMKLGCVDNALEVFHGTE----EKG------------VSSWNALIIGFAMNGLADKSL 512
           +MY K G +D A  +          KG            + SW++++ G+  NG  +  +
Sbjct: 309 EMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGM 368

Query: 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572
           + F  M    +  +  T   ++ AC + G+++ G +  ++ IQ+  L  ++     ++D+
Sbjct: 369 KTFRSMVCELIVVDIRTVATIISACANAGILEFG-KQIHAYIQKIGLRIDAYVGSSLIDM 427

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
             ++G L +A  + E +   P+V  W +++  C  HG 
Sbjct: 428 YSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQ 464



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 150/340 (44%), Gaps = 52/340 (15%)

Query: 334 ALIHMYSSCGEITTAEKL----FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
           + +H  +S G   +   L    F  G    L S N +++ Y+K  +++ A  LFD +  K
Sbjct: 37  SFLHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHK 96

Query: 390 DVVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
           +  +W+ +ISG+A+    SE   SLF EMQ  G  P++ TL SV+  C+    +  GK I
Sbjct: 97  NTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGI 156

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKL-------------------------------GCV 477
           HA+I +NG+  + +L  +++D+Y+K                                G V
Sbjct: 157 HAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDV 216

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           + +LE+F     K V SWN +I G    G    +LE    M   G   + +TF   L   
Sbjct: 217 EKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILV 276

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS----- 592
             + LV+ G R  +  +    L  +      +V++ G+ G + +A  +++ +P++     
Sbjct: 277 SSLSLVEVG-RQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKG 335

Query: 593 ----------PDVATWGALLGACKKHGDHEMGERVGRKLV 622
                       + +W +++     +G +E G +  R +V
Sbjct: 336 NFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMV 375



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +++M+  Y+     +  +  ++ M+   + VD  T   +  A A    +  GK IH ++ 
Sbjct: 351 WSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQ 410

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K G   D YV ++LI+MY+  G L  A  +F++    ++V W S+++G       +EA  
Sbjct: 411 KIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAIS 470

Query: 219 IYNKMPERNIIASNSMIV----LFGRKGNVAEACRLFKEMP-----KKDLVSWSALISCY 269
           ++  M    II +    V         G + E CR F+ M        ++  ++++++ Y
Sbjct: 471 LFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLY 530

Query: 270 EQ-NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK 322
            +   + E    +F N I H   V      S LS+C        G SV  + ++
Sbjct: 531 GRAGHLIEAKNFIFENSISHFTSVWR----SFLSSCRLHKNFNMGKSVSEMLLQ 580


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/682 (35%), Positives = 365/682 (53%), Gaps = 96/682 (14%)

Query: 24  FKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADT--FAASRLIKFSTDLLPFIEM 81
           F P   LS L T LQ C+S K   QI + +I T    D     ++RL       LP I+ 
Sbjct: 18  FNPH-KLSFLST-LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLP-IDP 74

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
            Y+  + A L +PN  ++N ++R                L  +NN  +            
Sbjct: 75  RYALSLLAQLRTPNLPLYNAIIRG---------------LATSNNDSI------------ 107

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
                  EG +++  +L  G   D Y   T+  +   C +  A R+  +       V   
Sbjct: 108 -------EGLVVYKQMLSKGIVPDNY---TIPFVLKACAESRAVREGEE-------VHGQ 150

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
           +I  G  +                 ++  SN+++ ++     +  A ++F   P++DLVS
Sbjct: 151 AIKMGLAS-----------------DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS 193

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           W+ +I  Y +     E + LF  M    +  D + +V VLS+CA L  ++ G  +H   +
Sbjct: 194 WTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYII 253

Query: 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381
           +                              ++  NLD+   N+++  YLKCG    AR 
Sbjct: 254 R------------------------------NSNVNLDVFVGNALVDMYLKCGDANFARK 283

Query: 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441
           +F  M  K+VVSW++MISG AQ  QF E+L +F +MQ  G++PD+ TLV+V+++C +L  
Sbjct: 284 VFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGV 343

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           L+ GKW+HAY+ +N ++ +  +G  L+DMY K G +D A  VF     K V S+ A+I+G
Sbjct: 344 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVG 403

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
            AM+G   K+L++FSEM K G+ P+E+TFVGVL AC H+GLV+EG ++F  M   + L P
Sbjct: 404 LAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRP 463

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
             +HYGCMVDLLGRAG++ EAEE I +MP+ PD    GALLGACK HG  E+GE V +K+
Sbjct: 464 QLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKI 523

Query: 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAG 681
            +++P  DG +VL+SNI++S  RW D L++R  M  R + K PGCS IE +G+IHEF  G
Sbjct: 524 EKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKG 583

Query: 682 DRTHPQINEIDNMLDEMAKKLK 703
           D++HP+I EI  +LDE+   LK
Sbjct: 584 DKSHPKIKEIYKLLDEIMSHLK 605


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 332/553 (60%), Gaps = 32/553 (5%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           AC +F+++ +     ++ +I  Y  N  +E A+ L+ +M+   V  D      VL ACA 
Sbjct: 85  ACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACAR 144

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L V++ G  +H    K+G+E  + +QN+LI+MY                           
Sbjct: 145 LAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYG-------------------------- 178

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI-RPD 425
                KC  +E + A+F  M +K V SWS +I+ +A    + E L+LF +M   G  R +
Sbjct: 179 -----KCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAE 233

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
           E+ LV+V+SACTHL A   G+  H  + KN  ++N  + T+L+DMY+K G +   L +F 
Sbjct: 234 ESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQ 293

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               K   S++ +I G  ++G   ++L++FSEM + G+ P+++T+V VL AC H GLVDE
Sbjct: 294 NMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDE 353

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G   F+ M  E+R+EP  +HYGCMVDL GRAG+L+EA +L++SMP+  +   W +LL AC
Sbjct: 354 GLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSAC 413

Query: 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
           K H + ++GE     L  L   +   +++LSN++A   +W++  ++R  M+ RG+++ PG
Sbjct: 414 KVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPG 473

Query: 666 CSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKET 725
            S++E    +++F++ D+++ +   I  M+ +M  +L+ EGY PDT +V  D+D+EEK  
Sbjct: 474 YSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGE 533

Query: 726 TLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFH 785
            L  HS+KLAIAF LI  S  + IRI++NLR+CNDCH+  K +S  ++REI VRDR+RFH
Sbjct: 534 RLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFH 593

Query: 786 HFKHGSCSCMDFW 798
           HFK G+CSC D+W
Sbjct: 594 HFKDGNCSCRDYW 606



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 210/457 (45%), Gaps = 51/457 (11%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           ++KC+S ++F Q+  Q++  GL  D+F +S ++  +  L  +  M Y+  IF  L+ P  
Sbjct: 39  VKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLA-TCALSDWNSMDYACSIFQQLDEPTT 97

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
           F FNTM+R Y+     + AI LY  ML   V  DN+TYP++ +A A    + EG  IH H
Sbjct: 98  FDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGH 157

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           V K G + DVYV N+LINMY  C D+  +  +F       + SW++I+A + +     E 
Sbjct: 158 VFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWEC 217

Query: 217 KFIYNKMP----------------------------------------ERNIIASNSMIV 236
             ++  M                                         E N+    S++ 
Sbjct: 218 LALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMD 277

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ + G++ +   LF+ M +K+ +S+S +IS    +    +AL +F  M++  +  D+V 
Sbjct: 278 MYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVT 337

Query: 297 VVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            VSVLSAC++  +V  G  +   +  +  IE  +     ++ +    G +  A +L  + 
Sbjct: 338 YVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSM 397

Query: 356 H-NLDLISWNSMISGY-----LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
               + + W S++S       LK G +  A  LF  +   +   +  + + YA+  Q+  
Sbjct: 398 PIKANDVLWRSLLSACKVHDNLKLGEI-AAENLF-RLSSHNPSDYLVLSNMYARAQQWEN 455

Query: 410 TLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQG 445
              +  +M + G I+    +LV V S     V+ D+ 
Sbjct: 456 AAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKS 492



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 15/280 (5%)

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L  WNSM          + A ++F  + E     ++TMI GY  +  F   + L+ +M  
Sbjct: 76  LSDWNSM----------DYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQ 125

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
             + PD  T   V+ AC  L  + +G  IH ++ K GL+ +  +  +LI+MY K   ++ 
Sbjct: 126 REVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEM 185

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPNEITFVGVLGACR 538
           +  +F   E+K V+SW+A+I   A   +  + L +F +M + G     E   V VL AC 
Sbjct: 186 SCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACT 245

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
           H+G    G     S+++ +  E N      ++D+  + G L++   L ++M     + ++
Sbjct: 246 HLGAFHLGRCAHGSLLK-NITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQL-SY 303

Query: 599 GALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLS 636
             ++     HG      ++  ++VE  L+PD   +  +LS
Sbjct: 304 SVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLS 343


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/705 (34%), Positives = 384/705 (54%), Gaps = 79/705 (11%)

Query: 138 AQASALRLSVFEGKLIHDHVL---KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           A A +LR     GK IH  ++   +   DSD+   N+LIN+Y+ CG    ARKLFD    
Sbjct: 34  ATAKSLRF----GKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQ 89

Query: 195 LDLVSWNSILAGYVNADNVEEAKFIYNKM-------PERNIIA----------------- 230
            ++VSW++++ GY++   V E   ++  +       P   I                   
Sbjct: 90  RNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ 149

Query: 231 ----------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
                            N++I ++ R  +V  A ++   +P  D+ S+++++S   ++  
Sbjct: 150 CHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGC 209

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
             EA  +   M+D  V+ D V  VSVL  CA +  ++ G  +HA  +K G+         
Sbjct: 210 RGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLV-------- 261

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
                                   D+   +++I  Y KCG V  AR  FD + +++VV+W
Sbjct: 262 -----------------------FDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAW 298

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           + +++ Y Q+  F ETL+LF +M+    RP+E T   +++AC  LVAL  G  +H  I  
Sbjct: 299 TAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVM 358

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           +G K + I+G  LI+MY K G +D++  VF     + V +WNA+I G++ +GL  ++L +
Sbjct: 359 SGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLV 418

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F +M  +G  PN +TF+GVL AC H+ LV EG  +F+ ++++  +EP  +HY CMV LLG
Sbjct: 419 FQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLG 478

Query: 575 RAGMLKEAEELIESMP-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           RAG+L EAE  +++   +  DV  W  LL AC  H ++ +G+++   ++++ P   G + 
Sbjct: 479 RAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYT 538

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSN+HA   +WD V+++R +M  R + K PG S ++     H F++    HP+  +I  
Sbjct: 539 LLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFE 598

Query: 694 MLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMK 753
            + ++   +K  GYAPD   V  D++ E+KE  L  HSEKLA+A+GL+ I PP PIRI+K
Sbjct: 599 KVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIK 658

Query: 754 NLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           NLR+C+DCH A K IS+A +R I+VRD +RFHHF+ G C+C D W
Sbjct: 659 NLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 71/409 (17%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALR 144
           K+F  +   N   ++ +M  Y+ +    + + L++ +++ +    N Y + ++    A  
Sbjct: 82  KLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADS 141

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
             V EGK  H ++LK+G     YV N LI+MY+ C  + +A ++ D  P  D+ S+NSIL
Sbjct: 142 GRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSIL 201

Query: 205 AGYVNADNVEEAKFIYNKMPERNII----------------------------------- 229
           +  V +    EA  +  +M +  +I                                   
Sbjct: 202 SALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLV 261

Query: 230 ----ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                S+++I  +G+ G V  A + F  +  +++V+W+A+++ Y QN  +EE L LF  M
Sbjct: 262 FDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKM 321

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
                  +E     +L+ACA+L  +  G  +H   V  G + ++ + NALI+MYS  G I
Sbjct: 322 ELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNI 381

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
            ++  +F    N D+I+WN+MI                                GY+ H 
Sbjct: 382 DSSYNVFSNMMNRDVITWNAMI-------------------------------CGYSHHG 410

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
              + L +F +M   G  P+  T + V+SAC HL  + +G +    I K
Sbjct: 411 LGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMK 459



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           QI +Q++ TGL+ D F +S LI          E+  + K F  L   N   +  ++ AY+
Sbjct: 250 QIHAQLLKTGLVFDVFVSSTLIDTYGKC---GEVLNARKQFDGLRDRNVVAWTAVLTAYL 306

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q    ++ + L+  M   +   + +T+ +L  A A  +++  G L+H  ++ +GF + + 
Sbjct: 307 QNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLI 366

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           V N LINMY+  G++ ++  +F      D+++WN+++ GY +    ++A  ++  M
Sbjct: 367 VGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDM 422


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 327/573 (57%), Gaps = 49/573 (8%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSV 300
           +V  A R+F  +       W+ LI +C       EEA +L+  M++      D+     V
Sbjct: 155 DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 214

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA +     G  VH   VK G    + + N LIH+Y SC                  
Sbjct: 215 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC------------------ 256

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        G ++ AR +FD M E+ +VSW++MI    +  ++   L LF EMQ  
Sbjct: 257 -------------GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR- 302

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCV 477
              PD  T+ SV+SAC  L +L  G W HA++ +     + ++ ++  +LI+MY K G +
Sbjct: 303 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 362

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLG 535
             A +VF G +++ ++SWNA+I+GFA +G A++++  F  M  K+  V PN +TFVG+L 
Sbjct: 363 RMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLI 422

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H G V++G ++F+ M++++ +EP  +HYGC+VDL+ RAG + EA +++ SMPM PD 
Sbjct: 423 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 482

Query: 596 ATWGALLGACKKHGDH-EMGERVGRKLVELQPDHD-------GFHVLLSNIHASKGRWDD 647
             W +LL AC K G   E+ E + R ++  + D++       G +VLLS ++AS  RW+D
Sbjct: 483 VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND 542

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M   G+ K PGCS IE NGI HEF AGD +HPQ  +I   L  +  +L+  GY
Sbjct: 543 VGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 602

Query: 708 APDTLEVAF--DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            PD  +       +   KE +L  HSE+LAIAFGLI + P  PIRI KNLR+CNDCH   
Sbjct: 603 LPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVT 662

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+ F+ EI+VRDR RFHHFK GSCSC+D+W
Sbjct: 663 KLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 210/462 (45%), Gaps = 64/462 (13%)

Query: 38  QKCQSFKQFTQILSQMILTGLI---ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           + C    Q  Q+ +  + T      A  F   ++++ S+    F +++Y+F++F  +E+ 
Sbjct: 113 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSS---FSDVNYAFRVFDSIENH 169

Query: 95  NGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKL 152
           + F++NT++RA     +  ++A  LY+ ML       D +T+P + +A A      EGK 
Sbjct: 170 SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQ 229

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  ++K GF  DVYVNN LI++Y  CG L  ARK+FDE P   LVSWNS++   V    
Sbjct: 230 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 289

Query: 213 VEEAKFIYNKMPER-----------------------------------------NIIAS 231
            + A  ++ +M                                            +++  
Sbjct: 290 YDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 349

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-- 289
           NS+I ++ + G++  A ++F+ M K+DL SW+A+I  +  +   EEA+  F  M+D R  
Sbjct: 350 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 409

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTA 348
           V  + V  V +L AC +   V  G     + V+   IE  +     ++ + +  G IT A
Sbjct: 410 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 469

Query: 349 -EKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMI--EKDVVSWSTMISG---- 400
            + +       D + W S++    K G SVE +  +   +I  ++D  S +   SG    
Sbjct: 470 IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVL 529

Query: 401 ----YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
               YA   ++++   +   M  HGIR +       I+  +H
Sbjct: 530 LSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 571


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 358/679 (52%), Gaps = 72/679 (10%)

Query: 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY 220
           G+  + ++ N LI++Y  C     A  +F      ++ SW  +LA +    + +     +
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 221 NKMPERNI---------------------------------------IASNSMIVLFGRK 241
             M  + I                                       I   +++ L+G+ 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVL 301
           G+  +A  +F  M  +D+V+WSA+++ Y +N    EAL LF  M    V  ++V +VS L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361
            ACA+L  +++G  +H      GI+  + +  AL+++Y                      
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYG--------------------- 223

Query: 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                     KCG +E A   F  ++EK+VV+WS + + YA++D+  + + +   M   G
Sbjct: 224 ----------KCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEG 273

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIR--KNGLKINSILGTTLIDMYMKLGCVDN 479
           + P+  T VSV+ AC  + AL QG+ IH  I     GL+ +  + T L++MY K G +  
Sbjct: 274 LAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLAL 333

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A  +F       +  WN+LI   A +G  +K+LE+F  M+  G+ P  ITF  VL AC H
Sbjct: 334 AGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSH 393

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            G++D+G +HF S I +H + P ++H+GCMVDLLGRAG + ++E+L+  MP  P    W 
Sbjct: 394 AGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWM 453

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           A LGAC+ + + +        L +L P     +VLLSN++A  GRW DV  +R  M    
Sbjct: 454 AFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFM 513

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
            VK  G S IE    +HEF++GD  HP+I EI   L  + K +K  GY PDT  V  D+ 
Sbjct: 514 TVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVK 573

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           QE KET +  HSEKLA+AF L+T    +PIR++KNLR+CNDCHTA+KFIS+  +REIVVR
Sbjct: 574 QEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVR 633

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D +RFH F++G+CSC D+W
Sbjct: 634 DCNRFHRFQNGACSCGDYW 652



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 41/256 (16%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ M+ AY +   P++A+ L++ M  + V  +  T      A A    +  G L+H  V 
Sbjct: 145 WSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVE 204

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
             G  S V V   L+N+Y  CG + AA + F +    ++V+W++I A Y   D   +A  
Sbjct: 205 AQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIR 264

Query: 219 IYNKMP-----------------------------------------ERNIIASNSMIVL 237
           + ++M                                          E ++    +++ +
Sbjct: 265 VLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNM 324

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + + GN+A A  +F ++   DLV W++LI+   Q+   E+AL LF  M    +    +  
Sbjct: 325 YSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITF 384

Query: 298 VSVLSACANLTVVKAG 313
            SVL AC++  ++  G
Sbjct: 385 TSVLFACSHAGMLDQG 400



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  +   N   ++ +  AY + +  + AI +   M    +  ++ T+  +  A A   ++
Sbjct: 235 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAAL 294

Query: 148 FEGKLIHD--HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            +G+ IH+  HVL  G +SDVYV   L+NMY+ CG+L+ A  +FD+   LDLV WNS++A
Sbjct: 295 KQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIA 354

Query: 206 GYVNADNVEEAKFIYNKM 223
                   E+A  ++ +M
Sbjct: 355 TNAQHGQTEKALELFERM 372


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 326/550 (59%), Gaps = 36/550 (6%)

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F  +P  D ++++ +I  + +      +L  F +M  + + +D      VL AC+ L +
Sbjct: 44  VFSRIPSPDTIAYNTIIRSHSRF-FPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQI 102

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
                 +H+L VK G++  I +QNALI +Y                             G
Sbjct: 103 ---NLHLHSLIVKYGLDSDIFVQNALICVY-----------------------------G 130

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ-HHGIRPDEAT 428
           Y  CGS+E A  +FD M E+D VSWST+I+ +  +   SE L LF +MQ    + PDE T
Sbjct: 131 Y--CGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVT 188

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           ++SVISA +HL  L+ G+W+ A+I + GL ++  LGT LIDM+ + G +D ++ VF    
Sbjct: 189 MLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMA 248

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
            + V +W ALI G  ++G + ++L MF  M+KSGV P+ +TF GVL AC H GLV EG  
Sbjct: 249 VRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWD 308

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
            F S+ + +R++P   HYGCMVD+LGRAG+L EA + +E MPM P+   W  LLGAC  H
Sbjct: 309 IFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNH 368

Query: 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSM 668
            +  + E+V  K+ ++    +G  VLLSN++ + GRW +   +R  M  + + K PGCS 
Sbjct: 369 NNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSS 428

Query: 669 IEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLF 728
           I  +  IHEF++GD +HPQ  +I   L  +   L+  GY   T  V  DI++EE+E +L 
Sbjct: 429 INVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLS 488

Query: 729 RHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788
            HSEKLA+AF ++++     IRIMKNLRIC DCH+  K IS  F+R+I++RDR+RFHHF+
Sbjct: 489 YHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFE 548

Query: 789 HGSCSCMDFW 798
            G CSC D+W
Sbjct: 549 KGLCSCHDYW 558



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 141/277 (50%), Gaps = 46/277 (16%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           +SY+  +F+ + SP+   +NT++R++  R  P  ++  +  M +N + +DN+T+P + +A
Sbjct: 38  LSYARYVFSRIPSPDTIAYNTIIRSH-SRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKA 96

Query: 141 -SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
            S L++++     +H  ++K G DSD++V N LI +Y  CG L  A K+FDE    D VS
Sbjct: 97  CSRLQINLH----LHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVS 152

Query: 200 WNSILAGYVNADNVEEAKFIYNKM-------PER-------------------------- 226
           W++++A ++N     EA  ++ KM       P+                           
Sbjct: 153 WSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFI 212

Query: 227 -------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                  ++    ++I +F R G++ E+  +F++M  +++++W+ALI+    +    EAL
Sbjct: 213 GRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEAL 272

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
            +F +M    V  D V    VL AC++  +VK G  +
Sbjct: 273 AMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDI 309


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 333/559 (59%), Gaps = 35/559 (6%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS- 299
           GN   A ++F ++P   + +++++I  C       +E + LF +M+           ++ 
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           VL AC+ +  ++ G  +HA  ++ G      +Q++L++ YS C EIT             
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITI------------ 145

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
                              AR +FD + E+++V WS M+SGYA+    +E L +F EMQ 
Sbjct: 146 -------------------ARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQV 186

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            GI PDE +LV V+SAC  + ALD GKW+HAYI+K  + ++  L T LI+MY K GC++ 
Sbjct: 187 VGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEK 246

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539
           A E+F     K   +W+++I+G A++GLA+ +L +FS M+++   PN +TF+G+L AC H
Sbjct: 247 AREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAH 306

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            GLV +G R+++SM+ E  +EP+ +HYGCMVDLL R G++ EA +    +P +PD   W 
Sbjct: 307 GGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWR 364

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            LL A  K+   +  E V  KL+EL+P     +++L+N++AS  + + V  VR MM   G
Sbjct: 365 TLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENG 424

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           +  +PGC+ IE +G +H F+ GD +HP+  EI   L ++A K+ + GY P    V   ++
Sbjct: 425 IKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVN 484

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
            EEKE  L+ HSE+LAIA+GL+    P  IRI+KNLR+C DCH   K IS+ +DREI+VR
Sbjct: 485 DEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVR 544

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           DR RFH F +G+CSC D+W
Sbjct: 545 DRVRFHKFVNGTCSCKDYW 563



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 204/426 (47%), Gaps = 51/426 (11%)

Query: 48  QILSQM---ILT---GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNT 101
           QIL Q+   ILT    + + +F  S+++ F+  L PF    Y+ KIF+ + +P  F +N+
Sbjct: 2   QILRQIHARILTHVPPISSVSFLISKILSFAA-LSPFGNFDYARKIFSQIPNPGIFAYNS 60

Query: 102 MMRAYIQRNVP-QQAICLYKLMLNNNVGVDN-YTYPLLAQASALRLSVFEGKLIHDHVLK 159
           ++R  +   +P ++ I L+K M+       N +T   + +A ++ +++ EGK IH  +L+
Sbjct: 61  VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILR 120

Query: 160 AGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA--- 216
           +GF S  YV ++L+N Y+ C +++ ARK+FDE    +LV W+++++GY     + EA   
Sbjct: 121 SGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIM 180

Query: 217 ------------------------------------KFIYNKMPERNIIASNSMIVLFGR 240
                                                +I  +M   ++  + ++I ++ +
Sbjct: 181 FREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAK 240

Query: 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300
            G + +A  +F EM  KD  +WS++I     + + E+AL +F  M + +   + V  + +
Sbjct: 241 CGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGI 300

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           LSACA+  +V  G    +  +++GIE  +     ++ +    G I  A          D 
Sbjct: 301 LSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDP 360

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQFSETLSLFMEM 417
           + W +++  Y K   ++KA  +   ++E +     ++  + + YA   Q  +   +   M
Sbjct: 361 VIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMM 420

Query: 418 QHHGIR 423
           + +GI+
Sbjct: 421 KENGIK 426



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 72/373 (19%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSIL----------------------AGYVNADN----- 212
           G+   ARK+F + P   + ++NS++                       GY N +      
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 213 ----------VEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMPKKD 258
                     +EE K I+ ++      +S    +S++  + +   +  A ++F E+ +++
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           LV WSA++S Y +  M  EAL++F  M    +  DEV +V VLSACA +  +  G  VHA
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHA 217

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
              K  I   + L  ALI+MY+                               KCG +EK
Sbjct: 218 YIKKRMIHVDLELNTALINMYA-------------------------------KCGCIEK 246

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           AR +FD M  KD  +WS+MI G A H    + L++F  M+    +P+  T + ++SAC H
Sbjct: 247 AREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAH 306

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
              +  GK   + + + G++ +      ++D+  + G +D A +            W  L
Sbjct: 307 GGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTL 366

Query: 499 IIGFAMNGLADKS 511
           ++ +  N +  K+
Sbjct: 367 LVAYTKNRMLQKA 379


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/754 (33%), Positives = 397/754 (52%), Gaps = 76/754 (10%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   + +++       +  + + L+  M    +  + +T+  +  A A + 
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++  G+ +H   +K G  S V+V N+L+NMYA CG +  A+ +F+     D+VSWN+++A
Sbjct: 216 ALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMA 275

Query: 206 GY-VNADNVE------EAKFIYNKMPERNI-----------------------------I 229
           G  +N   +E      E++    KM +                                +
Sbjct: 276 GLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL 335

Query: 230 ASNSMIVL---FGRKGNVAEACRLFK-EMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
             N M  L   + + G +A+A  +F      +++VSW+A+IS   QN     A+VLF  M
Sbjct: 336 TGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
            + RVM +E    ++L A  +L+++     +HA  +K   +    +  AL+  YS     
Sbjct: 396 REDRVMPNEFTYSAMLKA--SLSILPP--QIHAQVIKTNYQHIPFVGTALLASYS----- 446

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                     K GS E A ++F  + +KDVV+WS M+S +AQ  
Sbjct: 447 --------------------------KFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILG 464
                  LF +M   GI+P+E T+ SVI AC    A +DQG+  HA   K        + 
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVS 540

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
           + L+ MY + G +D+A  VF    ++ + SWN++I G+A +G + K++E F +M+ SG+ 
Sbjct: 541 SALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
            + +TF+ V+  C H GLV EG ++F+SM+++H++ P  +HY CMVDL  RAG L E   
Sbjct: 601 MDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMS 660

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644
           LI  MP       W  LLGAC+ H + E+G+    KL+ L+P     +VLLSNI+A+ G+
Sbjct: 661 LIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGK 720

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W +  EVR +M  R V K  GCS I+    +H F+A D++HP  ++I   L  +  +LK 
Sbjct: 721 WKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780

Query: 705 EGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTA 764
           +GY+P+T  V  DI +++KE  L  HSE+LA+AFGLI   P  P++I+KNLR+C DCH  
Sbjct: 781 DGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMV 840

Query: 765 AKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            K +S   DREI++RD  RFHHF  G+CSC DFW
Sbjct: 841 MKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 52/393 (13%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           + A  S++ ++ + G+V E   +F+ MPKK++V+W++L++     +M+ E + LF  M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  +     SVLSA A+   +  G  VHA +VK G    + + N+L++MY+ CG +  
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A+ +F+     D++SWN++++G L+    E                              
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAG-LQLNECEL----------------------------- 284

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF E +    +  ++T  +VI  C +L  L   + +H+ + K+G  +   + T L
Sbjct: 285 -EALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTAL 343

Query: 468 IDMYMKLGCVDNALEVFH-GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            D Y K G + +AL +F   T  + V SW A+I G   NG    ++ +FS M++  V PN
Sbjct: 344 ADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPN 403

Query: 527 EITFVGVLGACR-------HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           E T+  +L A         H  ++   ++H    +    L   SK +G   D L    M+
Sbjct: 404 EFTYSAMLKASLSILPPQIHAQVIKTNYQHI-PFVGTALLASYSK-FGSTEDALSIFKMI 461

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++            DV  W A+L    + GD E
Sbjct: 462 EQ-----------KDVVAWSAMLSCHAQAGDCE 483



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 169/359 (47%), Gaps = 32/359 (8%)

Query: 253 EMPKKDL-VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           E+P++D  V  + ++  Y +  M  E L  F       V+VD   +  VL AC ++    
Sbjct: 57  EIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRV 116

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  +H L VK G +                GE++    L D                Y+
Sbjct: 117 LGEQLHCLCVKCGHDR---------------GEVSAGTSLVDM---------------YM 146

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           KCGSV +   +F+ M +K+VV+W+++++G A     SE ++LF  M+  GI P+  T  S
Sbjct: 147 KCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFAS 206

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           V+SA     ALD G+ +HA   K G + +  +  +L++MY K G V++A  VF+  E + 
Sbjct: 207 VLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD 266

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + SWN L+ G  +N    ++L++F E + +     + T+  V+  C ++  +    R  +
Sbjct: 267 MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALA-RQLH 325

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           S + +H           + D   + G L +A  +      S +V +W A++  C ++GD
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)

Query: 379 ARALFDAMIEKDV-VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT 437
           AR   D +  +D  V  + ++  YA+     E L  F   +  G+  D ATL  V+ AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 438 HLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            +     G+ +H    K G     +  GT+L+DMYMK G V   +EVF G  +K V +W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
           +L+ G A   +  + + +F  M+  G+ PN  TF  VL A    G +D G          
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG---------- 220

Query: 557 HRLEPNSKHYGC---------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
            R+   S  +GC         ++++  + G++++A+ +   M  + D+ +W  L+  
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAG 276


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 327/572 (57%), Gaps = 31/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   N+++ ++ +   +    ++F+ MP+KD+VS++ +I+ Y Q+ MYE+AL +   M 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              +  D   + SVL   +    V  G  +H   ++ GI+  + + ++L+ MY+      
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYA------ 252

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    K   +E +  +F  +  +D +SW+++++GY Q+ +
Sbjct: 253 -------------------------KSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGR 287

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           ++E L LF +M    +RP      SVI AC HL  L  GK +H Y+ + G   N  + + 
Sbjct: 288 YNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASA 347

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K G +  A ++F         SW A+I+G A++G   +++ +F EMK+ GV PN
Sbjct: 348 LVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPN 407

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           ++ FV VL AC H+GLVDE   +FNSM + + L    +HY  + DLLGRAG L+EA + I
Sbjct: 408 QVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFI 467

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
             M + P  + W  LL +C  H + E+ E+V  K+  +  ++ G +VL+ N++AS GRW 
Sbjct: 468 SKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWK 527

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
           ++ ++R  + ++G+ K P CS IE     H F++GDR+HP ++ I+  L  + ++++ EG
Sbjct: 528 EMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEG 587

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y  DT  V  D+D+E K   LF HSE+LA+AFG+I   P   IR+ KN+RIC DCH A K
Sbjct: 588 YVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIK 647

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           FIS+  +REI+VRD  RFHHF  GSCSC D+W
Sbjct: 648 FISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 213/446 (47%), Gaps = 74/446 (16%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI 98
           + +S  Q  Q+ +Q I T  ++ T +AS +I   T+L    E   +  +F  LESP    
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHE---ALLVFKTLESPPVLA 72

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + +++R +  +++  +A+  +  M  +    D+  +P + ++  + + +  G+ +H  ++
Sbjct: 73  WKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA-- 216
           + G D D+Y  N L+NMY+    + + RK+F+  P  D+VS+N+++AGY  +   E+A  
Sbjct: 133 RLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALR 192

Query: 217 -------------------------------------KFIYNKMPERNIIASNSMIVLFG 239
                                                 ++  K  + ++   +S++ ++ 
Sbjct: 193 MVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYA 252

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           +   + ++ R+F  + ++D +SW++L++ Y QN  Y EAL LF  M+  +V    V   S
Sbjct: 253 KSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSS 312

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           V+ ACA+L  +  G  +H   ++ G    I + +AL+ MYS CG I  A K+FD  +  D
Sbjct: 313 VIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHD 372

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
            +SW ++I                                G+A H    E +SLF EM+ 
Sbjct: 373 EVSWTAII-------------------------------MGHALHGHGHEAVSLFEEMKR 401

Query: 420 HGIRPDEATLVSVISACTHLVALDQG 445
            G++P++   V+V++AC+H+  +D+ 
Sbjct: 402 QGVKPNQVAFVAVLTACSHVGLVDEA 427



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 194/395 (49%), Gaps = 39/395 (9%)

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           EA  +FK +    +++W ++I C+    ++  AL  F+ M       D  V  SVL +C 
Sbjct: 57  EALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116

Query: 306 NLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365
            +  ++ G SVH   V++G++C                               DL + N+
Sbjct: 117 MMMDLRFGESVHGFIVRLGMDC-------------------------------DLYTGNA 145

Query: 366 MISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +++ Y K   ++  R +F+ M  KDVVS++T+I+GYAQ   + + L +  EM    ++PD
Sbjct: 146 LMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPD 205

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485
             TL SV+   +  V + +GK IH Y+ + G+  +  +G++L+DMY K   ++++  VF 
Sbjct: 206 AFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 265

Query: 486 GTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
               +   SWN+L+ G+  NG  +++L +F +M  + V P  + F  V+ AC H+  +  
Sbjct: 266 HLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHL 325

Query: 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGAC 605
           G +  +  +       N      +VD+  + G ++ A ++ + M +  +V +W A++   
Sbjct: 326 G-KQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEV-SWTAIIMGH 383

Query: 606 KKHG-DHE---MGERVGRKLVELQPDHDGFHVLLS 636
             HG  HE   + E + R+ V  +P+   F  +L+
Sbjct: 384 ALHGHGHEAVSLFEEMKRQGV--KPNQVAFVAVLT 416



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 132/271 (48%), Gaps = 2/271 (0%)

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F    +L   S + +IS Y     + +A  +F  +    V++W ++I  +     FS  L
Sbjct: 31  FIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRAL 90

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           + F+EM+  G  PD     SV+ +CT ++ L  G+ +H +I + G+  +   G  L++MY
Sbjct: 91  ASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMY 150

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            KL  +D+  +VF     K V S+N +I G+A +G+ + +L M  EM  S + P+  T  
Sbjct: 151 SKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLS 210

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL        V +G +  +  +    ++ +      +VD+  ++  ++++E +   +  
Sbjct: 211 SVLPIFSEYVDVLKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-Y 268

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLV 622
             D  +W +L+    ++G +    R+ R++V
Sbjct: 269 RRDSISWNSLVAGYVQNGRYNEALRLFRQMV 299


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 339/578 (58%), Gaps = 40/578 (6%)

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER------- 226
           G +S A KLF + P  D+V WN+++ G+   D   E   +Y  M      P+        
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 227 ---------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                                      N+   N+++ ++   G +  A  +F    K+D+
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
            SW+ +IS Y + + YEE++ L + M  + V    V ++ VLSAC+ +        VH  
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
             +   E  + L+NAL++ Y++CGE+  A ++F +    D+ISW S++ GY++ G+++ A
Sbjct: 262 VSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLA 321

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
           R  FD M  +D +SW+ MI GY +   F+E+L +F EMQ  G+ PDE T+VSV++AC HL
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            +L+ G+WI  YI KN +K + ++G  LIDMY K GC + A +VFH  +++   +W A++
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
           +G A NG   +++++F +M+   + P++IT++GVL AC H G+VD+  + F  M  +HR+
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRI 501

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           EP+  HYGCMVD+LGRAG++KEA E++  MPM+P+   WGALLGA + H D  M E   +
Sbjct: 502 EPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAK 561

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
           K++EL+PD+   + LL NI+A   RW D+ EVR  +V   + K PG S+IE NG  HEF+
Sbjct: 562 KILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFV 621

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFD 717
           AGD++H Q  EI   L+E+A++     Y PDT E+ F+
Sbjct: 622 AGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFE 659



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 149/336 (44%), Gaps = 35/336 (10%)

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340
           L M+ I   +  D    +S+L  C      K    +H+ ++  G+      Q        
Sbjct: 21  LLMSTITESISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQ-------- 69

Query: 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400
                   +KLF        + W S + G+     V  A  LF  + E DVV W+ MI G
Sbjct: 70  --------KKLF--------VFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKG 108

Query: 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH-LVALDQGKWIHAYIRKNGLKI 459
           +++ D   E + L++ M   G+ PD  T   +++       AL  GK +H ++ K GL  
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  +   L+ MY   G +D A  VF    ++ V SWN +I G+      ++S+E+  EM+
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
           ++ V+P  +T + VL AC  +   D   R  +  + E + EP+ +    +V+     G +
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKR-VHEYVSECKTEPSLRLENALVNAYAACGEM 287

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
             A  +  SM  + DV +W +++    + G+ ++  
Sbjct: 288 DIAVRIFRSMK-ARDVISWTSIVKGYVERGNLKLAR 322


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/799 (31%), Positives = 423/799 (52%), Gaps = 84/799 (10%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+L+++  +G + D +  S L+   +       + Y+  IF  +   N    N ++   +
Sbjct: 305  QLLTRVEKSGFLHDLYVGSALV---SGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLV 361

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA----SALRLSVFEGKLIHDHVLKAGF- 162
            ++   ++A+ L+ + + ++V ++  +Y ++  A      L     +G  +H  ++++G  
Sbjct: 362  RQKRGEEAVELF-MEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLL 420

Query: 163  DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222
            ++ + + N LINMYA CG ++ A  +F      D V+WNS++ G        EA   + +
Sbjct: 421  NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQE 480

Query: 223  MP---------------------------------------ERNIIASNSMIVLFGRKGN 243
            M                                        + ++  SN+++ L+G  G 
Sbjct: 481  MRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGY 540

Query: 244  VAEACRLFKEMPKKDLVSWSALISCYEQNE-MYEEALVLFMNMIDHRVMVDEVVVVSVLS 302
            V E  + F  M   D VSW++LI     +E    EA+  F+ M+      + V  +++L+
Sbjct: 541  VKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILA 600

Query: 303  ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
            A ++L++ + G  +HAL +K  +     ++NAL+  Y                       
Sbjct: 601  AVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYG---------------------- 638

Query: 363  WNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                     KCG +     +F  M ++ D VSW++MISGY  ++   + + +   M   G
Sbjct: 639  ---------KCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKG 689

Query: 422  IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
             R D  T  +V+SAC  +  L++G  +H    +  L+ + ++G+ L+DMY K G +D A 
Sbjct: 690  QRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYAS 749

Query: 482  EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
              F     + + SWN++I G+A +G   KSL++F++MK  G  P+ +TFVGVL AC H G
Sbjct: 750  RFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAG 809

Query: 542  LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
            LV+EG  HF+SM + + L P  +H+ CMVDLLGR G L + E+ +  MP+ P+V  W  +
Sbjct: 810  LVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTV 869

Query: 602  LGA-CKKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
            LGA C+ +G +  +G R    L+E++P +   ++LLSN++AS G+WDDV + R  M +  
Sbjct: 870  LGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAF 929

Query: 660  VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
            V K  GCS +     +H F+AGD++HP+ + I   L E+  K++L GY P+T    +D++
Sbjct: 930  VKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLE 989

Query: 720  QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
             E KE  L  HSEK+A+AF ++T     PIRI+KNLR+C DCH+A K+IS+  +R+IV+R
Sbjct: 990  GESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLR 1048

Query: 780  DRHRFHHFKHGSCSCMDFW 798
            D +RFHHF++G CSC DFW
Sbjct: 1049 DSNRFHHFENGKCSCGDFW 1067



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 145/563 (25%), Positives = 255/563 (45%), Gaps = 89/563 (15%)

Query: 97  FIFNTMMRAYIQRNVPQQAIC-LYKL-MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
            +FN         ++P Q +  LYK   L++N    +     LAQ         + + +H
Sbjct: 37  LLFNPFTNPLPPSSIPLQVLVDLYKSSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELH 96

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             + K GF +D+++ NTLIN+YA  GDL + RK+FDE P+ +LVSW+ +++GY       
Sbjct: 97  LQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPN 156

Query: 215 EAKFIYNKMPE-----------------------------------------RNIIASNS 233
           EA  ++ KM                                            ++ ASN 
Sbjct: 157 EACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNV 216

Query: 234 MIVLFGRK-GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +I ++G   G V  A R F  +  ++LVS +++IS Y Q      A  +F  M    VM 
Sbjct: 217 LISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM-QKEVMG 275

Query: 293 D-----EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
           D     E    S++SA  +L                      N    L+        +T 
Sbjct: 276 DGLKPNEYTFGSLISATCSLA---------------------NSGLVLLEQL-----LTR 309

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
            EK   +G   DL   ++++SG+ K GS+  A+ +F  M  ++VVS + +I G  +  + 
Sbjct: 310 VEK---SGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRG 366

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW----IHAYIRKNGLKINSI- 462
            E + LFMEM+   +  +  + + +++A      L+ GK     +HA++ ++GL    I 
Sbjct: 367 EEAVELFMEMK-DSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIA 425

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           +G  LI+MY K G +++A  VF   + K   +WN++I G   N    ++++ F EM+++ 
Sbjct: 426 IGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTE 485

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           + P+  T +  L +C  +G +  G + H   +  +  L+ +      ++ L G  G +KE
Sbjct: 486 LYPSNFTMISALSSCASLGWISVGEQLHCEGL--KLGLDLDVSVSNALLALYGECGYVKE 543

Query: 582 AEELIESMPMSPDVATWGALLGA 604
            ++   S+ +  D  +W +L+GA
Sbjct: 544 CQKAF-SLMLDYDHVSWNSLIGA 565



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/631 (22%), Positives = 274/631 (43%), Gaps = 101/631 (16%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           S+ + +   C S K   ++  Q+   G + D F  + LI     +    ++    K+F  
Sbjct: 78  SLAQRYRYSCGS-KDAEELHLQLFKNGFVNDLFLCNTLINIYARV---GDLGSGRKVFDE 133

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA--SALRLSVF 148
           +   N   ++ ++  Y +  +P +A  L++ M+++    ++Y +  + +A        + 
Sbjct: 134 MPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLK 193

Query: 149 EGKLIHDHVLKAGFDSDVYVNNTLINMYA-VCGDLSAARKLFDESPVLDLVSWNSILAGY 207
            G  IH  + K  + +DV  +N LI+MY    G +  AR+ FD     +LVS NS+++ Y
Sbjct: 194 FGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVY 253

Query: 208 -------------------VNADNVEEAKFIYNKMPERNIIASNSMIVL----------- 237
                              V  D ++  ++ +  +       +NS +VL           
Sbjct: 254 CQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKS 313

Query: 238 ---------------FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
                          F + G++  A  +F++M  +++VS + LI    + +  EEA+ LF
Sbjct: 314 GFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF 373

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVV----KAGTSVHALAVKIGI-ECYINLQNALIH 337
           M M D  V ++    + +L+A     V+    + G+ VHA  ++ G+    I + N LI+
Sbjct: 374 MEMKD-SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLIN 432

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MY+                               KCG++  A  +F  M  KD V+W++M
Sbjct: 433 MYA-------------------------------KCGAINDACVVFRLMDNKDSVTWNSM 461

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I+G  Q+ QF E +  F EM+   + P   T++S +S+C  L  +  G+ +H    K GL
Sbjct: 462 ITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGL 521

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD------KS 511
            ++  +   L+ +Y + G V    + F    +    SWN+LI       LAD      ++
Sbjct: 522 DLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-----GALADSEPSMLEA 576

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           +E F  M ++G  PN +TF+ +L A   + L + G +  ++++ +  +  ++     ++ 
Sbjct: 577 VESFLVMMRAGWDPNRVTFITILAAVSSLSLHELG-KQIHALVLKRNVAADTAIENALLA 635

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALL 602
             G+ G +   E +   M    D  +W +++
Sbjct: 636 CYGKCGDMGYCENIFSRMSDRQDEVSWNSMI 666



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 156/363 (42%), Gaps = 39/363 (10%)

Query: 341 SCGEITTAE---KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           SCG     E   +LF  G   DL   N++I+ Y + G +   R +FD M  +++VSWS +
Sbjct: 86  SCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCL 145

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL--VALDQGKWIHAYIRKN 455
           ISGY ++   +E   LF +M   G  P+     SVI AC       L  G  IH  + K 
Sbjct: 146 ISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKT 205

Query: 456 GLKINSILGTTLIDMYMK-LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
               +      LI MY   LG VD A   F     + + S N++I  +   G A  + ++
Sbjct: 206 QYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDI 265

Query: 515 FSEMKKS----GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY---- 566
           FS M+K     G+ PNE TF  ++ A     L + G      ++   R+E +   +    
Sbjct: 266 FSTMQKEVMGDGLKPNEYTFGSLISAT--CSLANSGLVLLEQLLT--RVEKSGFLHDLYV 321

Query: 567 -GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV--GRKLVE 623
              +V    +AG +  A+ + + M     V+  G ++G  ++    E  E     +  VE
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVE 381

Query: 624 LQPDH--------DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
           L P+           FHVL +     KG      EV   ++R G++      +   NG+I
Sbjct: 382 LNPNSYMIILTAFPEFHVLENG--KRKGS-----EVHAFLIRSGLLN---AQIAIGNGLI 431

Query: 676 HEF 678
           + +
Sbjct: 432 NMY 434


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/791 (31%), Positives = 403/791 (50%), Gaps = 74/791 (9%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+L  +I  G       A+ LI   +      E  Y   +F  +   +   +N M+ AY 
Sbjct: 968  QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY---VFDHMNECDIISWNAMISAYA 1024

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
               + ++++  +  M + +   ++ T   L    +   ++  G+ IH  V+K G DS+V 
Sbjct: 1025 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 1084

Query: 168  VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV------------------- 208
            + NTL+ +Y+  G    A  +F      DL+SWNS++A YV                   
Sbjct: 1085 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 1144

Query: 209  ----------------NADNVEEAKFIYNKMPERN----IIASNSMIVLFGRKGNVAEAC 248
                            N + + E+K ++  +        +I  N+++ ++G+ G + EA 
Sbjct: 1145 KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 1204

Query: 249  RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC-ANL 307
            ++ + MP+ D V+W+ALI  + +NE   EA+  +  + +  +  + + +VSVL AC A  
Sbjct: 1205 KVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 1264

Query: 308  TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             ++K G  +HA  V  G E    ++N+LI MY+                           
Sbjct: 1265 DLLKHGMPIHAHIVLTGFESDDYVKNSLITMYA--------------------------- 1297

Query: 368  SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                KCG +  +  +FD +  K  ++W+ M++  A H    E L +F EM++ G+  D+ 
Sbjct: 1298 ----KCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQF 1353

Query: 428  TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +    ++A  +L  L++G+ +H  + K G + +  +    +DMY K G + + L++    
Sbjct: 1354 SFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 1413

Query: 488  EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
              +   SWN LI  FA +G   K+ E F EM K G  P+ +TFV +L AC H GLVDEG 
Sbjct: 1414 INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 1473

Query: 548  RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             +++SM +E  + P  +H  C++DLLGR+G L  AE  I+ MP+ P+   W +LL AC+ 
Sbjct: 1474 AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 1533

Query: 608  HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
            HG+ E+  +    L+EL P  D  +VL SN+ A+ G+W+DV  +R  M    + K P CS
Sbjct: 1534 HGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACS 1593

Query: 668  MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
             ++    +H F  G++ HPQ + I   L E+ K  K  GY PDT     D+D+E+KE  L
Sbjct: 1594 WVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNL 1653

Query: 728  FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            + HSE+LA+AFGLI     + +RI KNLR+C DCH+  KF+S    R+IV+RD +RFHHF
Sbjct: 1654 WNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHF 1713

Query: 788  KHGSCSCMDFW 798
              G CSC D+W
Sbjct: 1714 SGGKCSCGDYW 1724



 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/592 (28%), Positives = 292/592 (49%), Gaps = 71/592 (11%)

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC 179
           KL+ +N   +D   Y  + Q    + +  +G LIH H++  GF SD+++N  LI  Y   
Sbjct: 19  KLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKV 78

Query: 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-------------- 225
           GD+ AAR +FD  P   +VSW ++++GY      E+A  +++ M                
Sbjct: 79  GDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSAL 138

Query: 226 -------------------------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                     N+   ++++    + G + +A  LF  M ++D+V
Sbjct: 139 RACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVV 198

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           SW+A+I  Y      +++  +F +M+   ++ D   + SVL A A    +     +H + 
Sbjct: 199 SWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGII 258

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            ++G   Y                              D+++   +I+ Y K GS+  A+
Sbjct: 259 TQLGYGSY------------------------------DIVT-GLLINAYAKNGSLRSAK 287

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFS-ETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
            L   M++KD+ S + +I+GYA    +S + L LF EM    I  D+  L S+++ C +L
Sbjct: 288 DLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANL 347

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
            +   G  IHA+  K     +  +G  LIDMY K G +++A   F   EEK V SW +LI
Sbjct: 348 ASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLI 407

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            G+A +G    ++ ++ +M+  G  PN++TF+ +L AC H GL  EG   FN+M+ ++ +
Sbjct: 408 SGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNI 467

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           +P ++HY CMVDL  R G+L+EA  L+  + +  + + WGA+LGA   +G   +G+    
Sbjct: 468 KPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAAS 527

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEA 671
            L  +QP++   +V+L++I+++ G WDD  ++R +M  R   K  G S  +A
Sbjct: 528 NLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQA 579



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 159/637 (24%), Positives = 287/637 (45%), Gaps = 82/637 (12%)

Query: 43   FKQFTQILSQMILTGLIADTFAAS-RLIKFSTDLL-----PFIEMSYSFKIFAFLESPNG 96
             K F++I SQM    L A     S  L  F T+ L      F  + ++  +F  +   N 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 97   FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF---EGKLI 153
              ++TM+  Y++  + ++A+ L+  M    +GV+   + + +  +A   S +   EG  +
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWG--LGVEPNGFMVASLITACSRSGYMADEGFQV 868

Query: 154  HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
            H  V+K G   DVYV   L++ Y   G +  A+KLF+E P  ++VSW S++ GY ++ N 
Sbjct: 869  HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 928

Query: 214  EEAKFIYNKMP---------------------------------------ERNIIASNSM 234
             E   +Y +M                                        E ++  +NS+
Sbjct: 929  GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 235  IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
            I +F    +V EAC +F  M + D++SW+A+IS Y  + +  E+L  F  M       + 
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 295  VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
              + S+LS C+++  +K G  +H L VK+G++  + + N L+ +YS              
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS-------------- 1094

Query: 355  GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                             + G  E A  +F AM E+D++SW++M++ Y Q  +  + L + 
Sbjct: 1095 -----------------EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKIL 1137

Query: 415  MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             E+   G   +  T  S ++AC++   L + K +HA I   G     I+G  L+ MY KL
Sbjct: 1138 AELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 1197

Query: 475  GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
            G +  A +V     +    +WNALI G A N   +++++ +  +++ G+  N IT V VL
Sbjct: 1198 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVL 1257

Query: 535  GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            GAC     + +     ++ I     E +      ++ +  + G L  +  + + +     
Sbjct: 1258 GACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP 1317

Query: 595  VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631
            + TW A++ A   HG  E   ++  ++  +  + D F
Sbjct: 1318 I-TWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQF 1353



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 137/605 (22%), Positives = 259/605 (42%), Gaps = 81/605 (13%)

Query: 4   ATKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTF 63
           A  L  L+  +K   +      P++ L IL+  + K ++ KQ   I + +I  G  +D  
Sbjct: 8   ACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDK-KAKKQGHLIHTHLITNGFGSDLH 66

Query: 64  AASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLML 123
             ++LI F   +   I    +  +F  +   +   +  M+  Y Q    ++A  L+  M 
Sbjct: 67  LNTKLIIFYVKVGDVIA---ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR 123

Query: 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLS 183
           +  V  + +TY    +A      +  G  +   + K  F  +++V + L++ ++ CG + 
Sbjct: 124 HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKME 183

Query: 184 AARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--------------- 228
            A  LF      D+VSWN+++ GY      +++  ++  M    +               
Sbjct: 184 DASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 243

Query: 229 ------------------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSA 264
                                   I +  +I  + + G++  A  L K M KKDL S +A
Sbjct: 244 EGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTA 303

Query: 265 LISCYEQNEMYE-EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           LI+ Y    +Y  +AL LF  M    + +D+V++ S+L+ CANL     GT +HA A+K 
Sbjct: 304 LITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKY 363

Query: 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383
                + + NALI MY+  GEI  A++ FD     ++ISW S+ISG              
Sbjct: 364 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISG-------------- 409

Query: 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443
                            YA+H      +SL+ +M+  G +P++ T +S++ AC+H     
Sbjct: 410 -----------------YAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTA 452

Query: 444 QG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIG 501
           +G +  +  + K  +K  +   + ++D++ + G ++ A  +    + K   S W A++  
Sbjct: 453 EGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGA 512

Query: 502 FAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
            ++ G      E  S +    + P N + +V +       GL D+  +    +++E   +
Sbjct: 513 SSIYGYMSLGKEAASNLFN--MQPENSVNYVVLASIYSAAGLWDDAWK-IRKLMEERSTK 569

Query: 561 PNSKH 565
            N+ +
Sbjct: 570 KNAGY 574


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 345/593 (58%), Gaps = 32/593 (5%)

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y    ++  A  +Y +M ++N ++SN +I  + R G++  A ++F EMP + L +W+A+I
Sbjct: 4   YSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMI 63

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           +   Q E  EE L LF  M       DE  + SV S  A L  V  G  +H  A+K G+E
Sbjct: 64  AGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLE 123

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + ++L HMY                               ++ G ++    +  +M
Sbjct: 124 LDLVVNSSLAHMY-------------------------------MRNGKLQDGEIVIRSM 152

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +++V+W+T+I G AQ+      L L+  M+  G RP++ T V+V+S+C+ L    QG+
Sbjct: 153 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 212

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA   K G      + ++LI MY K GC+ +A + F   E++    W+++I  +  +G
Sbjct: 213 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 272

Query: 507 LADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
             D+++++F+ M +++ +  NE+ F+ +L AC H GL D+G   F+ M++++  +P  KH
Sbjct: 273 QGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 332

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y C+VDLLGRAG L +AE +I+SMP+ PD   W  LL AC  H + EM ++V ++++E+ 
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEID 392

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+    +VLL+N+HAS  RW DV EVR  M  + V K  G S  E  G +H+F  GDR+ 
Sbjct: 393 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 452

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
            +  EI + L E+  ++KL+GY PDT  V  D+D+EEKE+ L +HSEKLA+AF L+ +  
Sbjct: 453 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 512

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIRI+KNLR+C+DCH A K+IS   +REI +RD  RFHHF +G CSC D+W
Sbjct: 513 GAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 167/333 (50%), Gaps = 7/333 (2%)

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           + MYS  G++ +A  L++     + +S N +I+GY++ G +  AR +FD M ++ + +W+
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
            MI+G  Q +   E LSLF EM   G  PDE TL SV S    L ++  G+ IH Y  K 
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           GL+++ ++ ++L  MYM+ G + +   V      + + +WN LI+G A NG  +  L ++
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             MK SG  PN+ITFV VL +C  + +  +G +     I+       +     ++ +  +
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSS-LISMYSK 239

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL---VELQPDHDGFH 632
            G L +A +   S     D   W +++ A   HG  +   ++   +    E++ +   F 
Sbjct: 240 CGCLGDAAKAF-SEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFL 298

Query: 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPG 665
            LL     S G  D  LE+  MMV +   K PG
Sbjct: 299 NLLYACSHS-GLKDKGLELFDMMVEKYGFK-PG 329



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 180/400 (45%), Gaps = 73/400 (18%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
           +N LIN Y   GDL +ARK+FDE P   L +WN+++AG +  +  EE   ++ +M     
Sbjct: 28  SNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGF 87

Query: 225 -----------------------------------ERNIIASNSMIVLFGRKGNVAEACR 249
                                              E +++ ++S+  ++ R G + +   
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEI 147

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           + + MP ++LV+W+ LI    QN   E  L L+  M       +++  V+VLS+C++L +
Sbjct: 148 VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 207

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +HA A+KIG    + + ++LI MYS CG +  A K F    + D + W+SMIS 
Sbjct: 208 RGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISA 267

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y   G  ++A  LF++M E+                          EM+      +E   
Sbjct: 268 YGFHGQGDEAIKLFNSMAEQ-------------------------TEME-----VNEVAF 297

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           ++++ AC+H    D+G +     + K G K      T ++D+  + GC+D A  +     
Sbjct: 298 LNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMP 357

Query: 489 EKGVSS-WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
            K     W  L+    ++  A+ + ++F E+ +  + PN+
Sbjct: 358 IKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE--IDPND 395



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +N M+   IQ    ++ + L++ M       D YT   +   SA   
Sbjct: 46  KVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLR 105

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           SV  G+ IH + +K G + D+ VN++L +MY   G L     +    PV +LV+WN+++ 
Sbjct: 106 SVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIM 165

Query: 206 GYVNADNVEEAKFIY----------NKMPERNIIASNS---------------------- 233
           G       E   ++Y          NK+    +++S S                      
Sbjct: 166 GNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASS 225

Query: 234 -------MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                  +I ++ + G + +A + F E   +D V WS++IS Y  +   +EA+ LF +M 
Sbjct: 226 VVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMA 285

Query: 287 DHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGE 344
           +   M V+EV  +++L AC++  +   G  +  + V K G +  +     ++ +    G 
Sbjct: 286 EQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 345

Query: 345 ITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AE +  +     D + W +++S      + E A+ +F  ++E D
Sbjct: 346 LDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEID 392


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/692 (33%), Positives = 377/692 (54%), Gaps = 75/692 (10%)

Query: 150 GKLIHDHVL---KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           GK+IH H++   +A  D+ V VN +LIN+YA C  +  AR LFD     ++VSW +++AG
Sbjct: 44  GKMIHAHLIITNQATKDNIVQVN-SLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAG 102

Query: 207 YVNADNVEEAKFIYNKM-------PERNIIAS---------------------------- 231
           Y +   V E   ++  M       P   I A+                            
Sbjct: 103 YFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVF 162

Query: 232 -----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                N++I ++ R+ +V  A  ++ E+P  D+ S++ +I+   +N    EAL +   M+
Sbjct: 163 HQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMV 222

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           D  ++ D V  V+    C++L  ++ G  VH                             
Sbjct: 223 DECIVWDNVTYVTAFGLCSHLKDLRLGLQVHC---------------------------- 254

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
              ++F  G   D    +++I  Y KCG++  AR +F+ +  K+VVSW+ +++ Y+Q+  
Sbjct: 255 ---RMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC 311

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
           F E L+ F EM+  G+ P+E T   ++++C  + AL  GK +H  I+K+G + + I+G  
Sbjct: 312 FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA 371

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           LI+MY K G ++ A +VF     +   +W+A+I G + +GL  ++L +F EM  +   P+
Sbjct: 372 LINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPH 431

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            +TFVGVL AC H+G V EG  + N ++++  +EP  +HY C+V LL +AG L EAE  +
Sbjct: 432 YVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFM 491

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           +S P+  DV  W  LL AC  H ++ +G++V   ++++ P   G ++LLSN++A   RWD
Sbjct: 492 KSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWD 551

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V+++R +M  R V K PG S IE    IH F++  +THP+ N+I   + E+   ++  G
Sbjct: 552 GVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMG 611

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PD   V  D++ E+K   +  HSEKLAIA+GL+      PIR++KNLR+C DCH+A K
Sbjct: 612 YVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVK 671

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+  +R I+VRD +RFH F  G CSC D+W
Sbjct: 672 LISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 207/482 (42%), Gaps = 76/482 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN-YTYPLLAQASALRL 145
           +F  +   N   +  +M  Y    +  + + L+K M++ +    N Y +  +  + +   
Sbjct: 84  LFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSG 143

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
            V EG   H + LK+G     YV N LI MY+   D+  A  ++ E P LD+ S+N I+ 
Sbjct: 144 QVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIIN 203

Query: 206 GYVNADNVEEAKFIYNKMPERNII------------------------------------ 229
           G +      EA  + ++M +  I+                                    
Sbjct: 204 GLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY 263

Query: 230 ---ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
               S+++I ++G+ GN+  A ++F  +  K++VSW+A+++ Y QN  +EEAL  F  M 
Sbjct: 264 DSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEME 323

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
              ++ +E     +L++CA ++ +  G  +H    K G E +I + NALI+MYS  G I 
Sbjct: 324 VDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIE 383

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
            A K+F      D I+W++                               MI G + H  
Sbjct: 384 AAHKVFLEMICRDSITWSA-------------------------------MICGLSHHGL 412

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGT 465
             E L +F EM      P   T V V+SAC HL ++ +G  +++  +++ G++      T
Sbjct: 413 GREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYT 472

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMN---GLADKSLEMFSEMKKS 521
            ++ +  K G +D A      T  K  V +W  L+    ++   GL  K  E+  +M   
Sbjct: 473 CIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPG 532

Query: 522 GV 523
            V
Sbjct: 533 DV 534



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 59/442 (13%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY----PLLAQASALRLSVFEGKL 152
           F +N ++   ++   P +A+ +   M++  +  DN TY     L +    LRL    G  
Sbjct: 196 FSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRL----GLQ 251

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  + + G + D +V++ +I+MY  CG++  ARK+F+     ++VSW +ILA Y     
Sbjct: 252 VHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC 311

Query: 213 VEEAKFIYNKMP---------------------------------------ERNIIASNS 233
            EEA   + +M                                        E +II  N+
Sbjct: 312 FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA 371

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           +I ++ + G++  A ++F EM  +D ++WSA+I     + +  EALV+F  M+  +    
Sbjct: 372 LINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPH 431

Query: 294 EVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
            V  V VLSACA+L  V+ G   ++ L  + GIE  +     ++ +    G +  AE   
Sbjct: 432 YVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFM 491

Query: 353 DAGH-NLDLISWNSMISG---YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFS 408
            +     D+++W +++S    +   G  +K   L   M   DV ++  + + YA+  ++ 
Sbjct: 492 KSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWD 551

Query: 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
             + +   M+   ++ +       I    H V + +GK  H    +   K+       L+
Sbjct: 552 GVVKIRKLMRERNVKKEPGASWIEIRNSIH-VFVSEGK-THPESNQIYEKVQE-----LL 604

Query: 469 DMYMKLGCVDNALEVFHGTEEK 490
            M   +G V +   VFH  E++
Sbjct: 605 TMIRPMGYVPDIAAVFHDVEDE 626



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+  +M  TG   D+F +S +I         +    + K+F  L++ N   +  ++ AY 
Sbjct: 251 QVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILN---ARKVFNRLQTKNVVSWTAILAAYS 307

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q    ++A+  +  M  + +  + YT+ +L  + A   ++  GKL+H  + K+GF+  + 
Sbjct: 308 QNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHII 367

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           V N LINMY+  G + AA K+F E    D ++W++++ G  +     EA  ++ +M
Sbjct: 368 VGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEM 423


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 334/559 (59%), Gaps = 33/559 (5%)

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE-EALVLFMNMIDHRVMVDEVVVVSV 300
           G+++   ++F  +P  D   +++LI    ++  +   +L  +  M+   V        SV
Sbjct: 58  GSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSV 117

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           + +CA+L+ +K G  VH               + L+H                 G  LD+
Sbjct: 118 IKSCADLSALKHGRVVHG--------------HVLVH-----------------GFGLDV 146

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
               ++++ Y KCG +  AR +FD + E+ +V+W++MISGY Q+    E + LF  M+  
Sbjct: 147 YVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKET 206

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+ PD AT VSV+SAC HL A   G W+H YI  NGL +N +LGT+LI+MY++ G V  A
Sbjct: 207 GVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKA 266

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            EVF   +E+ V +W A+I G+  NG   +++E+F EM+++G+ PN ITFV VL AC H 
Sbjct: 267 REVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHA 326

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI-ESMPMSPDVATWG 599
           GLV+EG R F S+ +E+ L P  +H  C+VD+LGRAG+L EA   I E +P +P  A   
Sbjct: 327 GLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILT 386

Query: 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659
           A+LGACK H + ++G +V   L+  +P++   +V+LSNI+A  GR D V  VR  M+R+ 
Sbjct: 387 AMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKC 446

Query: 660 VVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDID 719
           + K  G S +E +   + F  GD++H + N I + LDE+  K    GY P +  V  +++
Sbjct: 447 LKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELE 506

Query: 720 QEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVR 779
           +EE+E  L  HSEKLAIAFGL+  S   PIRI+KNLR+C DCH+A KFIS    REI+VR
Sbjct: 507 EEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVR 566

Query: 780 DRHRFHHFKHGSCSCMDFW 798
           D+ RFHHFK GSCSC+D+W
Sbjct: 567 DKLRFHHFKVGSCSCLDYW 585



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 209/483 (43%), Gaps = 117/483 (24%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H H++ +G+     +   L+N+    G +S  R++F   P  D   + S++     + N
Sbjct: 31  VHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHN 90

Query: 213 VE-EAKFIYNKMPERNIIASN--------------------------------------- 232
               + + Y++M   N+  SN                                       
Sbjct: 91  FSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQA 150

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++ L+G+ G++  A ++F ++ ++ +V+W+++IS YEQN   +EA+ LF  M +  V  
Sbjct: 151 ALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEP 210

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D    VSVLSACA+L     G  VH   V  G++  + L  +LI+MY  CG ++ A ++F
Sbjct: 211 DSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVF 270

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D+    ++++W +MISGY                            +GY      S+ + 
Sbjct: 271 DSMKERNVVAWTAMISGY--------------------------GTNGYG-----SQAVE 299

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMY 471
           LF EM+ +G+ P+  T V+V+SAC H   +++G+ + A IR+    +  +     L+DM 
Sbjct: 300 LFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDML 359

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            + G +D                        A N + ++  E           P      
Sbjct: 360 GRAGLLDE-----------------------AYNFIKEEIPE----------NPAPAILT 386

Query: 532 GVLGACRHMGLVDEGHRHFN--SMIQEHRL--EP-NSKHYGCMVDLLGRAGMLKEAEELI 586
            +LGAC+        H++F+  + + EH L  EP N  HY  + ++   AG + + E + 
Sbjct: 387 AMLGACKM-------HKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVR 439

Query: 587 ESM 589
            +M
Sbjct: 440 NNM 442



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 40/278 (14%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQ-RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +SY+ +IF  + +P+ F+F +++++  +  N    ++  Y  M+ +NV   NYT+  + +
Sbjct: 60  ISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIK 119

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           + A   ++  G+++H HVL  GF  DVYV   L+ +Y  CGDL  ARK+FD+     +V+
Sbjct: 120 SCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVA 179

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPER--------------------------------- 226
           WNS+++GY      +EA  ++++M E                                  
Sbjct: 180 WNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIV 239

Query: 227 ------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 N++   S+I ++ R GNV++A  +F  M ++++V+W+A+IS Y  N    +A+ 
Sbjct: 240 GNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVE 299

Query: 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           LF  M  + +  + +  V+VLSACA+  +V  G  + A
Sbjct: 300 LFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFA 337


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 327/573 (57%), Gaps = 49/573 (8%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSV 300
           +V  A R+F  +       W+ LI +C       EEA +L+  M++      D+     V
Sbjct: 75  DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 134

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA +     G  VH   VK G    + + N LIH+Y SC                  
Sbjct: 135 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC------------------ 176

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        G ++ AR +FD M E+ +VSW++MI    +  ++   L LF EMQ  
Sbjct: 177 -------------GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR- 222

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCV 477
              PD  T+ SV+SAC  L +L  G W HA++ +     + ++ ++  +LI+MY K G +
Sbjct: 223 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 282

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLG 535
             A +VF G +++ ++SWNA+I+GFA +G A++++  F  M  K+  V PN +TFVG+L 
Sbjct: 283 RMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLI 342

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H G V++G ++F+ M++++ +EP  +HYGC+VDL+ RAG + EA +++ SMPM PD 
Sbjct: 343 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 402

Query: 596 ATWGALLGACKKHGDH-EMGERVGRKLVELQPDHD-------GFHVLLSNIHASKGRWDD 647
             W +LL AC K G   E+ E + R ++  + D++       G +VLLS ++AS  RW+D
Sbjct: 403 VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND 462

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M   G+ K PGCS IE NGI HEF AGD +HPQ  +I   L  +  +L+  GY
Sbjct: 463 VGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 522

Query: 708 APDTLEVAF--DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            PD  +       +   KE +L  HSE+LAIAFGLI + P  PIRI KNLR+CNDCH   
Sbjct: 523 LPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVT 582

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+ F+ EI+VRDR RFHHFK GSCSC+D+W
Sbjct: 583 KLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 212/465 (45%), Gaps = 64/465 (13%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLI---ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL 91
           T LQ C    Q  Q+ +  + T      A  F   ++++ S+    F +++Y+F++F  +
Sbjct: 30  TVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSS---FSDVNYAFRVFDSI 86

Query: 92  ESPNGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFE 149
           E+ + F++NT++RA     +  ++A  LY+ ML       D +T+P + +A A      E
Sbjct: 87  ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 150 GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN 209
           GK +H  ++K GF  DVYVNN LI++Y  CG L  ARK+FDE P   LVSWNS++   V 
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 210 ADNVEEAKFIYNKMPER-----------------------------------------NI 228
               + A  ++ +M                                            ++
Sbjct: 207 FGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDV 266

Query: 229 IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
           +  NS+I ++ + G++  A ++F+ M K+DL SW+A+I  +  +   EEA+  F  M+D 
Sbjct: 267 LVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK 326

Query: 289 R--VMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEI 345
           R  V  + V  V +L AC +   V  G     + V+   IE  +     ++ + +  G I
Sbjct: 327 RENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYI 386

Query: 346 TTA-EKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMI--EKDVVSWSTMISG- 400
           T A + +       D + W S++    K G SVE +  +   +I  ++D  S +   SG 
Sbjct: 387 TEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGA 446

Query: 401 -------YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
                  YA   ++++   +   M  HGIR +       I+  +H
Sbjct: 447 YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 491


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 340/571 (59%), Gaps = 32/571 (5%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +     ++ ++ R G + +A  +   MP++ +VSW+ +IS Y Q E + EAL LF+ M+ 
Sbjct: 77  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 136

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
              + +E  + +VL++C+    +  G  VH+L VK   E ++ + ++L+ MY+       
Sbjct: 137 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA------- 189

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                   K  ++++AR +FD + E+DVVS + +ISGYAQ    
Sbjct: 190 ------------------------KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 225

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF ++   G++ +  T  ++++A + L +LD GK +HA I +  L     L  +L
Sbjct: 226 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 285

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G +  +  VF    E+ V SWNA+++G+  +GL  + + +F ++ K  V P+ 
Sbjct: 286 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 344

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +T + VL  C H GLVDEG   F+++++E     ++ HYGC++DLLGR+G L++A  LIE
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           +MP     + WG+LLGAC+ H +  +GE V +KL+E++P++ G +V+LSNI+A+ G W D
Sbjct: 405 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 464

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V +VR +M+ + V K PG S I  + +IH F + +R HP   +I+  + E+   +K  G+
Sbjct: 465 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 524

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PD   V  D+D E+KE  L  HSEKLAI FGL+   P   IR+MKNLRIC DCH  AKF
Sbjct: 525 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 584

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +S+ ++REI +RD++RFH   HG+C+C D+W
Sbjct: 585 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 187/397 (47%), Gaps = 73/397 (18%)

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
           R +++EG+ +H  ++ A +   V++   L+ MY  CG L  AR + D  P   +VSW ++
Sbjct: 55  RRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTM 114

Query: 204 LAGYVNADNVEEAKFIYNKM------P--------------------------------- 224
           ++GY   +   EA  ++ KM      P                                 
Sbjct: 115 ISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF 174

Query: 225 ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
           E ++   +S++ ++ +  N+ EA R+F  +P++D+VS +A+IS Y Q  + EEAL LF  
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 234

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           +    +  + V   ++++A + L  +  G  VHAL ++  +  ++ LQN+LI MYS CG+
Sbjct: 235 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGK 294

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           +  + ++FD      ++SWN+                               M+ GY +H
Sbjct: 295 LLYSRRVFDNMLERSVVSWNA-------------------------------MLMGYGRH 323

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINSIL 463
               E +SLF ++ H  ++PD  TL++V+S C+H   +D+G  I    +++    +++  
Sbjct: 324 GLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGH 382

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
              +ID+  + G ++ AL +      E   S W +L+
Sbjct: 383 YGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLL 419



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 48/278 (17%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + TM+  Y Q     +A+ L+  ML      + YT   +  + +   S+++GK +H  ++
Sbjct: 111 WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLV 170

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K  F+S ++V ++L++MYA   ++  AR++FD  P  D+VS  +I++GY      EEA  
Sbjct: 171 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 230

Query: 219 IYNKMPERNI----------------IAS-----------------------NSMIVLFG 239
           ++ ++    +                +AS                       NS+I ++ 
Sbjct: 231 LFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYS 290

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G +  + R+F  M ++ +VSW+A++  Y ++ +  E + LF ++    V  D V +++
Sbjct: 291 KCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLA 349

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           VLS C++  +V  G  +    VK         Q+AL+H
Sbjct: 350 VLSGCSHGGLVDEGLDIFDTVVK--------EQSALLH 379



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           + I+AC    AL +G+ +HA +     +    LGT L+ MY++ G +D+A  V     E+
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V SW  +I G++      ++L++F +M ++G  PNE T   VL +C     + +G +  
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG-KQV 165

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +S++ +   E +      ++D+  ++  ++EA  + +++P   DV +  A++    + G 
Sbjct: 166 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISGYAQKGL 224

Query: 611 HEMGERVGRKLVE--LQPDHDGFHVLLSNI 638
            E    + R+L    +Q +H  F  L++ +
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTAL 254



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 42/268 (15%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYS 84
           N   L T L  C   QS  Q  Q+ S ++ T   +  F  S L+    D+    E +  +
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLL----DMYAKSENIQEA 197

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            ++F  L   +      ++  Y Q+ + ++A+ L++ + +  +  ++ T+  L  A +  
Sbjct: 198 RRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGL 257

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S+  GK +H  +L+      V + N+LI+MY+ CG L  +R++FD      +VSWN++L
Sbjct: 258 ASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAML 317

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVS 261
            GY                               GR G   E   LFK++ K+   D V+
Sbjct: 318 MGY-------------------------------GRHGLGHEVISLFKDLHKEVKPDSVT 346

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHR 289
             A++S      + +E L +F  ++  +
Sbjct: 347 LLAVLSGCSHGGLVDEGLDIFDTVVKEQ 374


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/737 (34%), Positives = 381/737 (51%), Gaps = 103/737 (13%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR--------- 186
           LL ++ A R  +F GK +H   +K+   S  Y++N  +N+Y+ CG LS AR         
Sbjct: 14  LLLKSVAER-DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEP 72

Query: 187 ----------------------KLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP 224
                                 +LFDE+P  D VS+N++++GY +A     A  ++ +M 
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 225 E----------RNIIAS---------------------------NSMIVLFGRKGNVAEA 247
           E            +IA+                           N+ +  + + G + EA
Sbjct: 133 ELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREA 192

Query: 248 CRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
             +F  M   +D VSW+++I  Y Q++   +AL L+  MI     +D   + SVL+A  +
Sbjct: 193 VSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTS 252

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           L  +  G   H   +K G     ++ + LI  YS CG           G +         
Sbjct: 253 LDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG-----------GRD--------- 292

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE-TLSLFMEMQHHGIRPD 425
                    +  +  +F  ++  D+V W+TMISGY+ +++ SE  +  F +MQ  G RPD
Sbjct: 293 --------GMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPD 344

Query: 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI-LGTTLIDMYMKLGCVDNALEVF 484
           + + V V SAC++L +  QGK IH    K+ +  N I +   LI +Y K G + +A  VF
Sbjct: 345 DCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVF 404

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
               E    S+N +I G+A +G   ++L ++  M  SG+ PN ITFV +L AC H G VD
Sbjct: 405 DRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVD 464

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
           EG ++FN+M +  ++EP ++HY CM+DLLGRAG L+EAE  I++MP  P    W ALLGA
Sbjct: 465 EGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGA 524

Query: 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIP 664
           C+KH +  + ER  ++L+ +QP     +V+L+N++A  G+W+++  VR  M  + + K P
Sbjct: 525 CRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKP 584

Query: 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKE 724
           GCS IE     H F+A D +HP I E++  L+EM KK+K  GY  D        D+  + 
Sbjct: 585 GCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEG 644

Query: 725 TTLFR---HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDR 781
               R   HSEKLA+AFGL++      I ++KNLRIC DCH A KF+S    REI+VRD 
Sbjct: 645 EEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDN 704

Query: 782 HRFHHFKHGSCSCMDFW 798
            RFH FK G CSC D+W
Sbjct: 705 LRFHCFKDGKCSCGDYW 721



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 215/528 (40%), Gaps = 118/528 (22%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAY-------IQRNV----PQ---------------- 113
           +SY+   F   E PN F +N +++AY       I R +    PQ                
Sbjct: 59  LSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADA 118

Query: 114 ----QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVN 169
                A+ L+K M      VD +T   L  A   R+ +   K +H   +  GFDS   VN
Sbjct: 119 RETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVN 176

Query: 170 NTLINMYAVCGDLSAARKLF-DESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
           N  +  Y+  G L  A  +F     + D VSWNS++  Y       +A  +Y +M     
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236

Query: 225 -----------------------------------ERNIIASNSMIVLF---GRKGNVAE 246
                                               +N    + +I  +   G +  +++
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSD 296

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMY-EEALVLF--MNMIDHRVMVDEVVVVSVLSA 303
           + ++F+E+   DLV W+ +IS Y  NE + EEA+  F  M  I HR   D+   V V SA
Sbjct: 297 SEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHR--PDDCSFVCVTSA 354

Query: 304 CANLTVVKAGTSVHALAVKIGIEC-YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
           C+NL+    G  +H LA+K  I    I++ NALI +Y   G +  A ++FD    L+ +S
Sbjct: 355 CSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVS 414

Query: 363 WNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           +N MI G                               YAQH   +E L L+  M   GI
Sbjct: 415 FNCMIKG-------------------------------YAQHGHGTEALRLYQRMLDSGI 443

Query: 423 RPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
            P+  T V+++SAC H   +D+G K+ +       ++  +   + +ID+  + G ++ A 
Sbjct: 444 APNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAE 503

Query: 482 EVFHGTEEK-GVSSWNALIIGFAMN---GLADKSLEMFSEMKKSGVTP 525
                   K G  +W AL+     +    LA+++ +    M+    TP
Sbjct: 504 RFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATP 551



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 182/405 (44%), Gaps = 51/405 (12%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N+M+ AY Q     +A+ LYK M+     +D +T   +  A      +  G+  H  ++
Sbjct: 208 WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLI 267

Query: 159 KAGFDSDVYVNNTLINMYAVCG---DLSAARKLFDESPVLDLVSWNSILAGY-VNADNVE 214
           KAGF  + +V + LI+ Y+ CG    +S + K+F E    DLV WN++++GY +N ++ E
Sbjct: 268 KAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSE 327

Query: 215 EAKFIYNKM----------------------------------------PERNIIASNSM 234
           EA   + +M                                        P   I  +N++
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNAL 387

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I L+ + GN+ +A R+F  MP+ + VS++ +I  Y Q+    EAL L+  M+D  +  + 
Sbjct: 388 ISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNN 447

Query: 295 VVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           +  V++LSACA+   V  G    + +     IE      + +I +    G++  AE+  D
Sbjct: 448 ITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 354 A-GHNLDLISWNSMISGYLKCGSVEKA-RALFDAMIEKDVVS--WSTMISGYAQHDQFSE 409
           A  +    ++W +++    K  ++  A RA  + M+ + + +  +  + + YA   ++ E
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEE 567

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
             S+   M+   IR         +    H+   +   W H  IR+
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAED--WSHPMIRE 610



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 12/188 (6%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  +   N   FN M++ Y Q     +A+ LY+ ML++ +  +N T+  +  A A   
Sbjct: 402 RVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCG 461

Query: 146 SVFEGKLIHDHVLKAGF--DSDVYVNNTLINMYAVCGDLSAARKLFDESPVL-DLVSWNS 202
            V EG+   +  +K  F  + +    + +I++    G L  A +  D  P     V+W +
Sbjct: 462 KVDEGQKYFN-TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAA 520

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVL---FGRKGNVAEACRLFKEM----- 254
           +L       N+  A+    ++     +A+   ++L   +   G   E   + K M     
Sbjct: 521 LLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRI 580

Query: 255 PKKDLVSW 262
            KK   SW
Sbjct: 581 RKKPGCSW 588


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/764 (33%), Positives = 402/764 (52%), Gaps = 85/764 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV---DNYTYPLLAQASA 142
           K+F  +   N   +N +M A      P++ + L++  L +  G    D  T   +    A
Sbjct: 120 KVFEGMAGRNLVSWNALMAAVAD---PRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCA 176

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV---LDLVS 199
                  G+ +H   +K+G+D+   V+N L++MYA CG+++ A   F E+P     ++VS
Sbjct: 177 ALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVS 236

Query: 200 WNSILAGYVNADNVEEAKFIYN--KMPERNIIA--------------------------- 230
           WN +L GY        A  +    +M ER + A                           
Sbjct: 237 WNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAF 296

Query: 231 -------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                         N++I  +GR G +  ACR+F  +  K + SW+ALI  + QN     
Sbjct: 297 VVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASA 356

Query: 278 ALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           A+ LF  M +      D   + S+L AC NL  +  G + H   ++ G+E     +++ I
Sbjct: 357 AIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLE-----KDSFI 411

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
            +                          S++S Y++CG    AR LFDA+ EKD VSW+T
Sbjct: 412 RV--------------------------SLLSVYIQCGRESLARVLFDAVEEKDEVSWNT 445

Query: 397 MISGYAQHDQFSETLSLFMEMQHH--GIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           MI+GY+Q+    E+L LF EMQ    G  P      S + AC+ L A+  GK +H +  K
Sbjct: 446 MIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALK 505

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             L  +S L +++IDMY K G VD+A   F   + K   SW  +I G+A+NG   +++ +
Sbjct: 506 ADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGL 565

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           + +M + G+ P+  T++G+L AC H G++++G   F  M    ++E   +HY C++ +L 
Sbjct: 566 YDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLS 625

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           RAG   +A  L+E MP  PD     ++L AC  HG+ E+G++V  KL+EL+P     +VL
Sbjct: 626 RAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVL 685

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
            SN++A   +WD++ +VR M+   GV K PGCS I+  G ++ F+AG+ + P+++++  M
Sbjct: 686 ASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKM 745

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
              + +K++  GYAPDT  +  ++++EEK   L  HSEK AIAFGL+  + P  +R+ KN
Sbjct: 746 WYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKN 805

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +R+C DCH AAK IS+  DREIVVRD+ RFHHF+ G CSC D+W
Sbjct: 806 IRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 151/581 (25%), Positives = 260/581 (44%), Gaps = 98/581 (16%)

Query: 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR-LSVFEGKLIHDHVLKAGF-DSDV 166
           R+    AI    L  ++ V  D +T P      AL+     +G+ +H    K G  D D 
Sbjct: 45  RHADALAILPRLLAASDGVAPDRFTLP-----PALKSCRGDDGRQVHAVAAKLGLADGDP 99

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA--------DNVE---- 214
           +V N+L++MY  CG +  A K+F+     +LVSWN+++A   +         D +E    
Sbjct: 100 FVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGG 159

Query: 215 -----EAKFIYNKMPERNIIA-----------------------SNSMIVLFGRKGNVAE 246
                EA  +   +P    +A                       SN ++ ++ + G +A+
Sbjct: 160 TAAPDEATLV-TVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMAD 218

Query: 247 ACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLF--MNMIDHRVMVDEVVVVSVL 301
           A   F E P    +++VSW+ ++  Y +N     A  L   M M +  V  DE+ ++SVL
Sbjct: 219 AECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVL 278

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINL-QNALIHMYSSCGEITTAEKLFDAGHNLDL 360
             C+ L  +     +HA  V+ G+    ++  NALI  Y  CG +  A ++FD   +  +
Sbjct: 279 PVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMV 338

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
            SWN+                               +I  +AQ+ + S  + LF EM + 
Sbjct: 339 SSWNA-------------------------------LIGAHAQNGEASAAIELFREMTNA 367

Query: 421 -GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G +PD  ++ S++ AC +L  L  GK  H +I +NGL+ +S +  +L+ +Y++ G    
Sbjct: 368 CGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESL 427

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLGAC 537
           A  +F   EEK   SWN +I G++ NGL  +SL++F EM  KK G  P+ +     L AC
Sbjct: 428 ARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVAC 487

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +  V  G +  +    +  L  +S     ++D+  + G + +A    + +  + D  +
Sbjct: 488 SELPAVRLG-KEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLK-AKDAVS 545

Query: 598 WGALLG--ACKKHGDHEMG--ERVGRKLVELQPDHDGFHVL 634
           W  ++   A    G   +G  +++GR+ +E     DGF  L
Sbjct: 546 WTVMITGYAVNGRGKEAVGLYDKMGREGME----PDGFTYL 582



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 161/367 (43%), Gaps = 58/367 (15%)

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
           L  W+ L++   +   + +AL +   ++     V  D   +   L +C        G  V
Sbjct: 30  LPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQV 85

Query: 317 HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           HA+A K+G+                               + D    NS++S Y +CG V
Sbjct: 86  HAVAAKLGLA------------------------------DGDPFVGNSLVSMYGRCGRV 115

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           + A  +F+ M  +++VSW+ +++  A   +  E     +E       PDEATLV+V+  C
Sbjct: 116 DDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMC 175

Query: 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA----LEVFHGTEEKGV 492
             L   + G+ +H    K+G      +   L+DMY K G + +A    LE   G   + V
Sbjct: 176 AALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGA-GRNV 234

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMK--KSGVTPNEITFVGVLGACRHMGLVDEGH-RH 549
            SWN ++ G+A NG A  +  +  EM+  + GV  +EIT + VL  C   GL +    R 
Sbjct: 235 VSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCS--GLPELAKLRE 292

Query: 550 FNSMIQEHRLE------PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
            ++ +    L       PN+     ++   GR G L  A  + + +  S  V++W AL+G
Sbjct: 293 LHAFVVRRGLHLTGDMVPNA-----LIAAYGRCGCLLHACRVFDGI-CSKMVSSWNALIG 346

Query: 604 ACKKHGD 610
           A  ++G+
Sbjct: 347 AHAQNGE 353



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 29/283 (10%)

Query: 394 WSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
           W+ +++  ++  + ++ L++   +     G+ PD  TL   + +C      D G+ +HA 
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 452 IRKNGLKI-NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD- 509
             K GL   +  +G +L+ MY + G VD+A +VF G   + + SWNAL     M  +AD 
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNAL-----MAAVADP 143

Query: 510 -KSLEMFSE-MKKSGVT--PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
            + LE+F + ++  G T  P+E T V VL  C  +   + G R  + +  +   +   + 
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRV 202

Query: 566 YGCMVDLLGRAGMLKEAE-ELIESMP-MSPDVATWGALLGACKKHGDHEMGERVGRKLVE 623
              +VD+  + G + +AE   +E+ P    +V +W  +LG   ++G  E G   G  L E
Sbjct: 203 SNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNG--EAGAAFGL-LRE 259

Query: 624 LQPDHDGFH----VLLSNIHASKG--RWDDVLEVRGMMVRRGV 660
           +Q +  G       +LS +    G      + E+   +VRRG+
Sbjct: 260 MQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGL 302


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/759 (32%), Positives = 399/759 (52%), Gaps = 76/759 (10%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASA 142
           +  +F  ++  N   + +++ A+        A+ L++ ML + V  D  T+  +L + S 
Sbjct: 69  ALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSG 128

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++ EGK +H H+++ G++ D  V N ++ MY  CGD+  A  +FD     ++ SW  
Sbjct: 129 RERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTI 188

Query: 203 ILAGY--------------------VNADN---------------VEEAKFIY-----NK 222
           I+A Y                    V  D                +EEAK ++     + 
Sbjct: 189 IIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISST 248

Query: 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
             +R+     ++I L+G+ G + EA  +F ++  KD+VSWS++I+ + Q+   + A+ L 
Sbjct: 249 GLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL 308

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
           M M    V  + V  V+VL A  +L   + G  +HA  V+ G    + L +AL+ MY + 
Sbjct: 309 MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNW 368

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYA 402
           G                   W            VE AR++F++  E+DVVSWS+MI+GY+
Sbjct: 369 G-------------------W------------VETARSIFESSRERDVVSWSSMIAGYS 397

Query: 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSI 462
           Q++  +  LSLF EM+  G++P+  T VS I AC  + AL +G  +H  +R  GL  +  
Sbjct: 398 QNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVP 457

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
           + T L+++Y K G ++ A  VF G ++K + +W ++ + +  NG   +SL++   M+  G
Sbjct: 458 VATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQG 517

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
           + P+ I FV +L +C + G + +G  ++N M Q+  + P  +H GCMVD+LGRAG L+ A
Sbjct: 518 MKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAA 577

Query: 583 EELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642
           E+LI +M     +A W  LL ACK H D     R   K+ +L+P +   +VLLS++  + 
Sbjct: 578 EQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAA 636

Query: 643 GRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQ--INEIDNMLDEMAK 700
           G W+   E R  M  RGV ++ G S IE    +HEF+A     P   + EI   L+++ +
Sbjct: 637 GSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGR 696

Query: 701 KLKLEGYAPDTLEVAF-DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
           +++  GY PD   V   D+++  KE  +  HSE LA+  G+I+     P+RI KNLR+C+
Sbjct: 697 EMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRITKNLRMCS 756

Query: 760 DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           DCH A KF+S+   R I VRD  R HHF++G CSC D+W
Sbjct: 757 DCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 143/548 (26%), Positives = 242/548 (44%), Gaps = 82/548 (14%)

Query: 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSD-----VYVNNTLINMYAVCGDLSAARKLFD 190
           +L   S LR ++ EGK +H  V++     D       + N +I MY  CG    A  +FD
Sbjct: 16  ILTACSDLR-ALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFD 74

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS------------- 231
                ++V+W S+++ +  A +  +A  ++ KM      P+R    S             
Sbjct: 75  RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLD 134

Query: 232 ---------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                                N ++ ++G+ G+V +A  +F  +   ++ SW+ +I+ Y 
Sbjct: 135 EGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYA 194

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYI 329
           QN    E L L   M    V  D     +VL AC  +  ++    +HA  +   G++   
Sbjct: 195 QNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDA 254

Query: 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            +  ALI++Y  CG +  A  +F    N D++SW+SM                       
Sbjct: 255 AVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSM----------------------- 291

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIH 449
                   I+ +AQ  Q    + L M M   G+RP+  T V+V+ A T L A   GK IH
Sbjct: 292 --------IAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIH 343

Query: 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509
           A I + G   +  L + L+ MY   G V+ A  +F  + E+ V SW+++I G++ N    
Sbjct: 344 ARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPA 403

Query: 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCM 569
           ++L +F EM+  GV PN +TFV  + AC  +G +  G    +  ++   L+ +      +
Sbjct: 404 RALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRG-TQLHERVRCLGLDKDVPVATAL 462

Query: 570 VDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK--HGDHEMGERVGRKLVELQPD 627
           V+L G+ G L+EAE +   M    ++ TW ++  A  +  HG   +    G +L  ++PD
Sbjct: 463 VNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPD 521

Query: 628 HDGFHVLL 635
              F  +L
Sbjct: 522 GIVFVAIL 529



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 155/312 (49%), Gaps = 28/312 (8%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL 358
           ++L+AC++L  +  G  VH L ++                          E L       
Sbjct: 15  AILTACSDLRALPEGKRVHGLVMR--------------------------ESLLQDERPD 48

Query: 359 DLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418
           + +  N +I  YL+CG  + A  +FD M +++VV+W+++IS +     F + + LF +M 
Sbjct: 49  ESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKML 108

Query: 419 HHGIRPDEATLVSVISACT-HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477
             G+ PD  T  S++   +     LD+GK +H++I + G + + ++   +++MY K G V
Sbjct: 109 LSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDV 168

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           + A  VF   ++  V SW  +I  +A NG   + L + S M ++GV P+  TF  VLGAC
Sbjct: 169 EQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGAC 228

Query: 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             +G ++E      + I    L+ ++     +++L G+ G L+EA  +   +  + D+ +
Sbjct: 229 TAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQID-NKDIVS 287

Query: 598 WGALLGACKKHG 609
           W +++ A  + G
Sbjct: 288 WSSMIAAFAQSG 299



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 110/202 (54%), Gaps = 14/202 (6%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN-----SILGTTLIDMY 471
           M+   I+ + +   ++++AC+ L AL +GK +H  + +  L  +     S+L   +I MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
           ++ GC D AL+VF   +++ V +W +LI  F   G    ++ +F +M  SGV+P+ ITF 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 532 GVL----GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
            +L    G  R++   DEG R  +S I +   E +      +V++ G+ G +++A  + +
Sbjct: 121 SILLKWSGRERNL---DEGKR-VHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFD 176

Query: 588 SMPMSPDVATWGALLGACKKHG 609
           S+   P+V +W  ++ A  ++G
Sbjct: 177 SI-QDPNVFSWTIIIAAYAQNG 197


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 327/573 (57%), Gaps = 49/573 (8%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSV 300
           +V  A R+F  +       W+ LI +C       EEA +L+  M++      D+     V
Sbjct: 89  DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 148

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA +     G  VH   VK G    + + N LIH+Y SC                  
Sbjct: 149 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC------------------ 190

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        G ++ AR +FD M E+ +VSW++MI    +  ++   L LF EMQ  
Sbjct: 191 -------------GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR- 236

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCV 477
              PD  T+ SV+SAC  L +L  G W HA++ +     + ++ ++  +LI+MY K G +
Sbjct: 237 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 296

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLG 535
             A +VF G +++ ++SWNA+I+GFA +G A++++  F  M  K+  V PN +TFVG+L 
Sbjct: 297 RMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLI 356

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H G V++G ++F+ M++++ +EP  +HYGC+VDL+ RAG + EA +++ SMPM PD 
Sbjct: 357 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 416

Query: 596 ATWGALLGACKKHGDH-EMGERVGRKLVELQPDHD-------GFHVLLSNIHASKGRWDD 647
             W +LL AC K G   E+ E + R ++  + D++       G +VLLS ++AS  RW+D
Sbjct: 417 VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND 476

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M   G+ K PGCS IE NGI HEF AGD +HPQ  +I   L  +  +L+  GY
Sbjct: 477 VGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 536

Query: 708 APDTLEVAF--DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            PD  +       +   KE +L  HSE+LAIAFGLI + P  PIRI KNLR+CNDCH   
Sbjct: 537 LPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVT 596

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+ F+ EI+VRDR RFHHFK GSCSC+D+W
Sbjct: 597 KLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 210/462 (45%), Gaps = 64/462 (13%)

Query: 38  QKCQSFKQFTQILSQMILTGLI---ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           + C    Q  Q+ +  + T      A  F   ++++ S+    F +++Y+F++F  +E+ 
Sbjct: 47  ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSS---FSDVNYAFRVFDSIENH 103

Query: 95  NGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKL 152
           + F++NT++RA     +  ++A  LY+ ML       D +T+P + +A A      EGK 
Sbjct: 104 SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQ 163

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  ++K GF  DVYVNN LI++Y  CG L  ARK+FDE P   LVSWNS++   V    
Sbjct: 164 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 223

Query: 213 VEEAKFIYNKMPER-----------------------------------------NIIAS 231
            + A  ++ +M                                            +++  
Sbjct: 224 YDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 283

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-- 289
           NS+I ++ + G++  A ++F+ M K+DL SW+A+I  +  +   EEA+  F  M+D R  
Sbjct: 284 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 343

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTA 348
           V  + V  V +L AC +   V  G     + V+   IE  +     ++ + +  G IT A
Sbjct: 344 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 403

Query: 349 -EKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMI--EKDVVSWSTMISG---- 400
            + +       D + W S++    K G SVE +  +   +I  ++D  S +   SG    
Sbjct: 404 IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVL 463

Query: 401 ----YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
               YA   ++++   +   M  HGIR +       I+  +H
Sbjct: 464 LSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 505


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/625 (36%), Positives = 338/625 (54%), Gaps = 69/625 (11%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRN--------VPQQAICLYKLMLNNNVG-VDNYTYPLLA 138
            A L S     +N  +RA    +        V ++ + LY+ +L +     D+ T+P L 
Sbjct: 73  LALLSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLL 132

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +A A       G     HVL+ G DSDV+V N   +  ++ G +  AR+LFD SPV DLV
Sbjct: 133 KACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLV 192

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           SWN+++ GYV                               R+GN AEA  LF  M  +D
Sbjct: 193 SWNTLIGGYV-------------------------------RRGNPAEALELFWRMVAED 221

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            V                             V  DEV +++ +S C  +  ++ G  +H 
Sbjct: 222 AV-----------------------------VRPDEVTMIAAVSGCGQMRDLELGRRLHG 252

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
                G+ C + L NAL+ MY  CG +  A+ +F+   +  ++SW +MI G+ K G ++ 
Sbjct: 253 FVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDD 312

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           AR +FD M E+DV  W+ +++GY Q  Q  E LSLF EMQ   + PDE T+V++++AC+ 
Sbjct: 313 ARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQ 372

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L AL+ G W+H YI K+ L  +  LGT+LIDMY K G ++ A+ +F    EK   +W A+
Sbjct: 373 LGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAM 432

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           I G A +G A++++E F  M + G  P+EITF+GVL AC H GLV EG   F+ M  ++ 
Sbjct: 433 ICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYH 492

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           LE   KHY CM+DLLGRAG L EAE+L+ +MPM PD   WGA+  AC+  G+  +GE+  
Sbjct: 493 LERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAA 552

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
            KLVE+ P   G +VLL+N++A         +VR MM   GV K+PGCS IE NG++HEF
Sbjct: 553 MKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEF 612

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLK 703
           +  D++H   + I + L E+  ++K
Sbjct: 613 IVKDKSHMDSHAIYDCLHEITLQIK 637



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 218/498 (43%), Gaps = 74/498 (14%)

Query: 37  LQKCQSFKQF---TQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C   +++      L+ ++  GL +D F  +    F +   P   M  + ++F     
Sbjct: 132 LKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGP---MEDARRLFDRSPV 188

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL-RLSVFE-GK 151
            +   +NT++  Y++R  P +A+ L+  M+  +  V      ++A  S   ++   E G+
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGR 248

Query: 152 LIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
            +H  V   G    V + N L++MY  CG L                             
Sbjct: 249 RLHGFVDSDGVSCTVRLMNALMDMYIKCGSL----------------------------- 279

Query: 212 NVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
             E AK ++ ++  R +++  +MIV F + G + +A ++F EMP++D+  W+AL++ Y Q
Sbjct: 280 --EMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQ 337

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
            +  +EAL LF  M +  V+ DE+ +V++L+AC+ L  ++ G  VH    K  +   + L
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVAL 397

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
             +LI MY+ CG I  A  +F      + ++W +MI                        
Sbjct: 398 GTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMI------------------------ 433

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                   G A H   +E +  F  M   G +PDE T + V+SAC H   + +G+   + 
Sbjct: 434 -------CGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSL 486

Query: 452 IR-KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLAD 509
           +  K  L+      + +ID+  + G +D A ++ +    E     W A+     M G  +
Sbjct: 487 METKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQG--N 544

Query: 510 KSLEMFSEMKKSGVTPNE 527
            SL   + MK   + P++
Sbjct: 545 ISLGEKAAMKLVEIDPSD 562


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/672 (33%), Positives = 362/672 (53%), Gaps = 74/672 (11%)

Query: 170 NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------ 223
           N+L+++Y  CG L  AR LFD  P+ ++VSWN ++AGY++  N  E   ++  M      
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 224 -PERNIIAS---------------------------------NSMIVLFGRKGNVAEACR 249
            P   +  +                                 ++++ ++ R  +V  A +
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 250 LFKEMPKK---DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           +   +P +   D+ S++++++   ++   EEA+ +   M+D  V  D V  V V+  CA 
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
           +  ++ G  VHA                               +L   G   D    + +
Sbjct: 234 IRDLQLGLRVHA-------------------------------RLLRGGLMFDEFVGSML 262

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           I  Y KCG V  AR +FD +  ++VV W+ +++ Y Q+  F E+L+LF  M   G  P+E
Sbjct: 263 IDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNE 322

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T   +++AC  + AL  G  +HA + K G K + I+   LI+MY K G +D++  VF  
Sbjct: 323 YTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTD 382

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
              + + +WNA+I G++ +GL  ++L++F +M  +   PN +TF+GVL A  H+GLV EG
Sbjct: 383 MIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEG 442

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
             + N +++  ++EP  +HY CMV LL RAG+L EAE  +++  +  DV  W  LL AC 
Sbjct: 443 FYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACH 502

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H ++++G R+   ++++ P   G + LLSN++A   RWD V+ +R +M  R + K PG 
Sbjct: 503 VHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGA 562

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S ++    IH FL+    HP+  +I   + ++   +K  GY P+   V  D++ E+KE  
Sbjct: 563 SWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGY 622

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLA+A+GL+ I  P PIRI+KNLR+C+DCHTA K IS+  +R I+VRD +RFHH
Sbjct: 623 LSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHH 682

Query: 787 FKHGSCSCMDFW 798
           F+ GSC+C+D W
Sbjct: 683 FRDGSCTCLDHW 694



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 200/466 (42%), Gaps = 78/466 (16%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLA 138
           ++  +  +F  +   N   +N +M  Y+      + + L+K M++  N   + Y +    
Sbjct: 65  QLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTAL 124

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VL 195
            A +    V EG   H  + K G     YV + L++MY+ C  +  A ++ D  P   V 
Sbjct: 125 SACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVN 184

Query: 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPERNI--------------------------- 228
           D+ S+NS+L   V +   EEA  +  +M +  +                           
Sbjct: 185 DIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVH 244

Query: 229 ------------IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276
                          + +I ++G+ G V  A  +F  +  +++V W+AL++ Y QN  +E
Sbjct: 245 ARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFE 304

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALI 336
           E+L LF  M     + +E     +L+ACA +  ++ G  +HA   K+G + ++ ++NALI
Sbjct: 305 ESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALI 364

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWST 396
           +MYS  G I ++  +F      D+I+WN+MI GY   G  ++A  +F  M+  +      
Sbjct: 365 NMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEEC---- 420

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
                                      P+  T + V+SA +HL  + +G +   ++ +N 
Sbjct: 421 ---------------------------PNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRN- 452

Query: 457 LKINSILG--TTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALI 499
            KI   L   T ++ +  + G +D A      T+ K  V +W  L+
Sbjct: 453 FKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLL 498



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 3/176 (1%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           ++ ++++  GL+ D F  S LI          E+  +  +F  L++ N  ++  +M AY+
Sbjct: 242 RVHARLLRGGLMFDEFVGSMLIDMYGKC---GEVLNARNVFDGLQNRNVVVWTALMTAYL 298

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q    ++++ L+  M       + YT+ +L  A A   ++  G L+H  V K GF + V 
Sbjct: 299 QNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVI 358

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
           V N LINMY+  G + ++  +F +    D+++WN+++ GY +    ++A  ++  M
Sbjct: 359 VRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDM 414


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 328/551 (59%), Gaps = 32/551 (5%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +PK D   + +LI+   +    +E+L+ +  M+   +        +V+ + A+LT
Sbjct: 73  RLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLT 132

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
               G ++H         C++                      +  G+ LD     +++S
Sbjct: 133 AFSIGETIH---------CHV----------------------YICGYGLDAYVQAALVS 161

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y K G V  AR +FD M EK VV+W++MISGY Q+    E + LF  MQ  G++PD +T
Sbjct: 162 FYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSST 221

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
            VS++SAC  + A+  G W+H YI +N   +N +LGT L++MY + G V  A EVF   E
Sbjct: 222 FVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSME 281

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           EK + +W A+I G+ M+G   +++E+F+EM   G  PN +TFV VL AC H GLVDEG +
Sbjct: 282 EKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQ 341

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE-SMPMSPDVATWGALLGACKK 607
            F +M QE+ L P+ +H  CMVD+LGRAG L EA + I+ + P  P  A W A+LGACK 
Sbjct: 342 IFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKM 401

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           H + ++G  V   L+ ++P++ G +V+LSNI+A  GR D V ++R +M+R  + K  G S
Sbjct: 402 HKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYS 461

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            I+ +  ++ F  GD++HP+ N+I   LDE+  + +  GY P +  V  ++++EE+E  L
Sbjct: 462 TIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYAL 521

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
             HSEKLAIAFGL+       IRI+KNLR+C DCHTA K+IS   +REI VRDR RFHHF
Sbjct: 522 RYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHF 581

Query: 788 KHGSCSCMDFW 798
           K GSCSC D+W
Sbjct: 582 KDGSCSCQDYW 592



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 177/405 (43%), Gaps = 74/405 (18%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINM-YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNAD 211
           IH  ++  G      +   L++  YA    +S  R+LF   P  D   ++S++       
Sbjct: 38  IHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFS 97

Query: 212 NVEEAKFIYNKMPERNIIASN--------------------------------------- 232
             +E+   Y +M   NI +SN                                       
Sbjct: 98  FPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQA 157

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
           +++  + + G+V  A ++F +MP+K +V+W+++IS YEQN   +EA+ LF  M D  V  
Sbjct: 158 ALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKP 217

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D    VS+LSACA +  +  G  VH    +   +  + L  AL++MYS CG ++ A ++F
Sbjct: 218 DSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVF 277

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D+    ++++W +MISG                               Y  H   S+ + 
Sbjct: 278 DSMEEKNIVAWTAMISG-------------------------------YGMHGHGSQAIE 306

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMY 471
           LF EM   G RP+  T V+V+SAC H   +D+G+ I   +++  GL  +      ++DM 
Sbjct: 307 LFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDML 366

Query: 472 MKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNGLADKSLEM 514
            + G ++ A +    T  +E   + W A++    M+   D  +E+
Sbjct: 367 GRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEV 411



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 42/349 (12%)

Query: 43  FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102
            K   QI +++I+TGL       ++L+ F+      I  SY+ ++F  +  P+ F+F+++
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPI--SYTRRLFFSIPKPDTFLFHSL 89

Query: 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGF 162
           +    + + PQ+++  Y+ ML  N+   NYT+  + ++SA   +   G+ IH HV   G+
Sbjct: 90  ITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGY 149

Query: 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA------ 216
             D YV   L++ YA  G +  ARK+FD+ P   +V+WNS+++GY      +EA      
Sbjct: 150 GLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFL 209

Query: 217 ---------------------------------KFIYNKMPERNIIASNSMIVLFGRKGN 243
                                            ++I     + N++   +++ ++ R GN
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 244 VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSA 303
           V++A  +F  M +K++V+W+A+IS Y  +    +A+ LF  M       + V  V+VLSA
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 304 CANLTVVKAGTSVH-ALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           CA+  +V  G  +   +  + G+   +  Q  ++ M    G +  A + 
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQF 378



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 2/241 (0%)

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
            Y     +   R LF ++ + D   + ++I+  ++     E+L  +  M    I     T
Sbjct: 61  AYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYT 120

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             +VI +   L A   G+ IH ++   G  +++ +   L+  Y K G V  A +VF    
Sbjct: 121 FSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMP 180

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           EK V +WN++I G+  NG   +++E+F  M+  GV P+  TFV +L AC  +G +  G  
Sbjct: 181 EKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFW 240

Query: 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608
             +  I  +  + N      ++++  R G + +A E+ +SM    ++  W A++     H
Sbjct: 241 -VHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSME-EKNIVAWTAMISGYGMH 298

Query: 609 G 609
           G
Sbjct: 299 G 299


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/753 (32%), Positives = 377/753 (50%), Gaps = 71/753 (9%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           ++F  + S N   +  M+  Y Q N P++A  LY  M  + V  D+ T+  L        
Sbjct: 98  ELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTT 157

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           ++ E   IH H+++ GF + + V N+L++ Y     L  A +LF E P  D VS+N ++ 
Sbjct: 158 TLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMIT 217

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
           GY      EEA  ++ +M   +                                      
Sbjct: 218 GYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVW 277

Query: 228 -IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            I  +N+++  + +   +  A  LF EMP+ D VS++ +I+ Y  N  YE++  LF  + 
Sbjct: 278 DIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
                       ++LS  A    +  G   HA AV       + + NAL+ MY+      
Sbjct: 338 GTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYA------ 391

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
                                    KC   E A  +F  +  ++ V W+ +IS Y Q   
Sbjct: 392 -------------------------KCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGF 426

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L +F EM    +  D+AT  S + A  +L ++  GK +H+ + + GL  +   G+ 
Sbjct: 427 HEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSV 486

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY   G + +A+EVF    ++ +  WNALI  ++ NG A+ +   F++M +SG+ P+
Sbjct: 487 LVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPD 546

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
            ++F+ VL AC H GLV++   +FNSM Q ++L+P  KHY  M+D+L R+G   EAE LI
Sbjct: 547 SVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLI 606

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD-GFHVLLSNIHASKGRW 645
             MP  PD   W ++L +C+ H + ++ ++   +L ++    D   +V +SNI+A  G+W
Sbjct: 607 SEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKW 666

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           ++  +V+  M  RGV K+   S +E +  +H F A DRTHPQ  +I   ++ + + +  E
Sbjct: 667 ENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKE 726

Query: 706 GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
           GY PDT     ++D+E K  +L  HSE+LAIAF LI     +PI IMKNLR C DCH A 
Sbjct: 727 GYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAI 786

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+   REI VRD  RFHHF+ GSCSC D+W
Sbjct: 787 KVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 219/554 (39%), Gaps = 107/554 (19%)

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
            ++K GFD ++   N  +        ++ AR+LFDE P  +  S N +++GYV + N+  
Sbjct: 36  RIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFR 95

Query: 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMY 275
           A+ ++  M  RN +                               SW+ +I  Y QN   
Sbjct: 96  ARELFESMFSRNEV-------------------------------SWTIMIGGYSQNNQP 124

Query: 276 EEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           +EA  L+  M    V  D +   ++LS   + T +K    +H+  ++ G    + + N+L
Sbjct: 125 KEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARAL------------- 382
           +  Y     +  A +LF      D +S+N MI+GY K G  E+A  L             
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG 244

Query: 383 --FDAMI-----EKDVV--------------SWSTMISG-----YAQHDQFSETLSLFME 416
             F AM+      +DV+               W   ++      Y++HD      +LF E
Sbjct: 245 FTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDE 304

Query: 417 MQH-----------------------------HGIRPDEAT--LVSVISACTHLVALDQG 445
           M                                G   D       +++S     + L  G
Sbjct: 305 MPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMG 364

Query: 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN 505
           +  HA            +G  L+DMY K    ++A  +F     +    W A+I  +   
Sbjct: 365 RQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQK 424

Query: 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           G  +++L+MF EM +  V  ++ TF   L A  ++  V  G +  +S+I+   L  +S  
Sbjct: 425 GFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLL--SSVF 482

Query: 566 YG-CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE- 623
            G  +VD+    G +K+A E+ + MP   ++  W AL+ A  ++GD E        ++E 
Sbjct: 483 SGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGDAEATFSSFADMIES 541

Query: 624 -LQPDHDGFHVLLS 636
            L PD   F  +L+
Sbjct: 542 GLYPDSVSFLSVLT 555



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 119/220 (54%)

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           V A  VK G +  I+  N  +       +I  A +LFD     +  S N M+SGY+K  +
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           + +AR LF++M  ++ VSW+ MI GY+Q++Q  E  +L+ EM   G++PD  T  +++S 
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
                 L +   IH++I + G   + I+  +L+D Y K  C+D A ++F     K   S+
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSF 212

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535
           N +I G+   G  +++L++F +M+     P+  TF  +LG
Sbjct: 213 NVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG 252



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 189/447 (42%), Gaps = 47/447 (10%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q  +Q ++T  +++    + L+        F + +   +IFA L   N   +  ++  Y+
Sbjct: 366 QTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDAN---RIFANLAYRNSVPWTAIISIYV 422

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q+   ++A+ ++K M   NV  D  T+    +ASA   SV  GK +H  V++ G  S V+
Sbjct: 423 QKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVF 482

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
             + L++MYA CG +  A ++F E P  ++V WN++++ Y    + E     +  M E  
Sbjct: 483 SGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESG 542

Query: 228 IIASN----SMIVLFGRKGNVAEACRLFKEM-------PKKDLVSWSALISCYEQNEMYE 276
           +   +    S++     +G V +A   F  M       P++    ++ +I    ++  + 
Sbjct: 543 LYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRK--HYATMIDVLCRSGRFN 600

Query: 277 EALVLFMNMIDHRVMVDEVVVVSVLSAC---ANLTVV-KAGTSVHALAVKIGIECYINLQ 332
           EA  L   M       DEV+  SVL++C    N  +  KA   +  +        Y+N+ 
Sbjct: 601 EAENLISEM---PFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMS 657

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           N    +Y+  G+   A K+  A                ++   V+K  A     I+  V 
Sbjct: 658 N----IYAEAGKWENAAKVKKA----------------MRERGVKKVTAYSWVEIDHRVH 697

Query: 393 SWSTMISGYAQHDQFSETLSLFME-MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
            ++     + Q +Q    ++  +E M   G +PD +  +  +     + +L   K+    
Sbjct: 698 VFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESL---KYHSER 754

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVD 478
           +      IN+  G+ +I M     CVD
Sbjct: 755 LAIAFALINTPEGSPIIIMKNLRACVD 781


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/580 (38%), Positives = 332/580 (57%), Gaps = 33/580 (5%)

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +  +P    ++  ++ + F + G +  A  LF EMP +++V+W+A+++    +    E +
Sbjct: 147 FGYLPVDPFVSCAALDMYF-KTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETI 205

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             +  + +   + + V   +  +ACA    +  G   H   VK G E             
Sbjct: 206 EAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFE------------- 252

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                             +D+   NSM+  Y KC    KARA+FD M  ++ VSW +M++
Sbjct: 253 ------------------MDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVA 294

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            YAQ+    E  + ++  +  G  P +  + S ++ C  L+ L  G+ +HA   ++ +  
Sbjct: 295 AYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA 354

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  + + L+DMY K GCV++A ++F+ T ++ + +WNA+I G+A  G A  +L +F +M 
Sbjct: 355 NIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMI 414

Query: 520 KSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +SG T PN IT V V+ +C   GL  +G+  F +M +   +EP ++HY C+VDLLGRAGM
Sbjct: 415 RSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGM 474

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            ++A E+I+ MPM P ++ WGALLGACK HG  E+G     KL EL P   G HVLLSN+
Sbjct: 475 EEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNM 534

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
            AS GRW +  ++R  M   G+ K PGCS +    ++H F A D  H   NEI  +L ++
Sbjct: 535 FASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKL 594

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K+++  GY PDT    +D+++EEKE+ +F+HSEKLA+AFGLI I P  PIRIMKNLRIC
Sbjct: 595 RKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRIC 654

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH A KFIS    REI+VRD +RFHHFK   CSC D+W
Sbjct: 655 VDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 191/457 (41%), Gaps = 75/457 (16%)

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP--LLAQASALRLSVFEGK 151
           P    +   +    Q   P  A+  +  ML   +  +++T+P    A ASA   S   G 
Sbjct: 80  PTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTI-GP 138

Query: 152 LIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV-- 208
            IH   ++ G+   D +V+   ++MY   G L  AR LF E P  ++V+WN+++   V  
Sbjct: 139 QIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLD 198

Query: 209 -----------------NADNVEEAKFIYNKMP--------------------ERNIIAS 231
                               NV  A   +N                       E ++   
Sbjct: 199 GRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 258

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           NSM+  +G+     +A  +F  M  ++ VSW ++++ Y QN   EEA   ++        
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE 318

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
             + +V S L+ CA L  +  G ++HA+AV+  I+  I + +AL+ MY  CG +  AE++
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
           F      +L++WN+MI GY   G  + A  +FD MI     +                  
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETA------------------ 420

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDM 470
                       P+  TLV+VI++C+       G  +   +R+  G++  +     ++D+
Sbjct: 421 ------------PNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDL 468

Query: 471 YMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNG 506
             + G  + A EV  G   +  +S W AL+    M+G
Sbjct: 469 LGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 505



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A A A+ LS+  G+  H  V+K GF+ DV V N++++ Y  C     AR +FD   V + 
Sbjct: 229 ACAGAMYLSL--GEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 286

Query: 198 VSWNSILAGYVNADNVEEAKFIY------NKMP--------------------------- 224
           VSW S++A Y      EEA   Y       + P                           
Sbjct: 287 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 346

Query: 225 ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                 + NI  +++++ ++G+ G V +A ++F E P+++LV+W+A+I  Y      + A
Sbjct: 347 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 406

Query: 279 LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALI 336
           L++F +MI       + + +V+V+++C+   + K G  +   +  + GIE        ++
Sbjct: 407 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 466

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKARALFDAMIE---KDVV 392
            +    G    A ++         IS W +++      G  E  R   + + E   +D  
Sbjct: 467 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 526

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +   + + +A   +++E   +  EM++ GI+ D
Sbjct: 527 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKD 559



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ-GKWIH 449
           VVS++  ISG AQH +    LS F  M   G+RP++ T  S   A          G  IH
Sbjct: 82  VVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIH 141

Query: 450 AY-IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLA 508
           +  IR   L ++  +    +DMY K G +  A  +F     + V +WNA++    ++G  
Sbjct: 142 SLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRP 201

Query: 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
            +++E +  ++++G  PN ++      AC     +  G + F+  + +   E +      
Sbjct: 202 LETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNS 260

Query: 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           MVD  G+     +A  + + M +   V +W +++ A  ++G  E
Sbjct: 261 MVDFYGKCRCAGKARAVFDGMGVRNSV-SWCSMVAAYAQNGAEE 303


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/758 (30%), Positives = 402/758 (53%), Gaps = 72/758 (9%)

Query: 80   EMSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
            +M+ + ++F  + S  N  ++N +M  Y +    ++++ L+  M    +  D +    L 
Sbjct: 365  DMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLL 424

Query: 139  QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            +         +G + H +++K GF +   V N LI+ YA    +  A  +F+  P  D +
Sbjct: 425  KCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 199  SWNSILAGY----VNADNVE-------------------------------EAKFIYNKM 223
            SWNS+++G     +N++ +E                                 + ++   
Sbjct: 485  SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYS 544

Query: 224  PERNIIA----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
             +  +I     +N+++ ++    +     ++F+ M +K++VSW+A+I+ Y +  ++++  
Sbjct: 545  VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVA 604

Query: 280  VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             L   M+   +  D   V S L A A    +K G SVH   ++ G+E  + + NAL+ MY
Sbjct: 605  GLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMY 664

Query: 340  SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                                           +KC +VE+AR +FD +  KDV+SW+T+I 
Sbjct: 665  -------------------------------VKCRNVEEARLIFDRVTNKDVISWNTLIG 693

Query: 400  GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            GY++++  +E+ SLF +M     RP+  T+  ++ A   + +L++G+ IHAY  + G   
Sbjct: 694  GYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLE 752

Query: 460  NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            +S     L+DMY+K G +  A  +F    +K + SW  +I G+ M+G    ++ +F +M+
Sbjct: 753  DSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 520  KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
             SG+ P+  +F  +L AC H GL  EG R F +M +E+++EP  KHY C+VDLL R G L
Sbjct: 813  GSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDL 872

Query: 580  KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            KEA E IESMP+ PD + W +LL  C+ H + ++ E+V  K+ +L+P++ G++VLL+NI+
Sbjct: 873  KEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIY 932

Query: 640  ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
            A   RW+ V +++  +  RG+ +  G S IE    +H F+A +R HP  N I   LD++A
Sbjct: 933  AEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVA 992

Query: 700  KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            ++++ EG+ P         D    +  L  HS KLA+AFG++ +    PIR+ KN ++C+
Sbjct: 993  RRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCS 1052

Query: 760  DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDF 797
             CH AAKFIS+  +REI++RD  RFH F+ G CSC  +
Sbjct: 1053 HCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 197/489 (40%), Gaps = 81/489 (16%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++ ++M AY +    Q+A+ L++ M    V  D +    + +  +   S+ EG++IH  +
Sbjct: 171 VWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLL 230

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAK 217
            K G      V N LI +Y+ CG +  A ++FD     D +SWNS++ G  +      A 
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAV 290

Query: 218 FIYNKMPERNIIAS---------------------------------------------- 231
            +++KM  +    S                                              
Sbjct: 291 DLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDA 350

Query: 232 ---NSMIVLFGRKGNVAEACRLFKEMPKKDLVS-WSALISCYEQNEMYEEALVLFMNMID 287
              + ++ ++ + G++A A R+F  M  K  V  W+ ++  Y +   +EE+L LF+ M +
Sbjct: 351 ALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHE 410

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  DE  +  +L     L+  + G   H   VK+G      + NALI  Y+    I  
Sbjct: 411 LGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGD 470

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A  +F+     D ISWNS+ISG   C S                            +   
Sbjct: 471 AVLVFNRMPRQDTISWNSVISG---CSS----------------------------NGLN 499

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           SE + LF+ M   G   D  TL+SV+ AC        G+ +H Y  K GL   + L   L
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY       +  ++F    +K V SW A+I  +   GL DK   +  EM   G+ P+ 
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDV 619

Query: 528 ITFVGVLGA 536
                 L A
Sbjct: 620 FAVTSALHA 628



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 206/474 (43%), Gaps = 67/474 (14%)

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             SDV   N  I      GDL+ A +L      +D+ S+  ++       ++E AK  + 
Sbjct: 65  LSSDV---NLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHA 121

Query: 222 KMPERNIIASNSMIVLFGRK--------GNVAEACRLFKEMPKK--DLVSWSALISCYEQ 271
            +   +  A+     + G++        G++ EA  +F  MP +  D+  W++L+S Y +
Sbjct: 122 LIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAK 181

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
              ++EA+ LF  M    V  D   V  VL   ++L  +  G  +H L  K+G+     +
Sbjct: 182 AGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAV 241

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NALI +YS CG +  A ++FD+ H  D ISWNSMI G    G                 
Sbjct: 242 ANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNG----------------- 284

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
             W                + LF +M   G      T++SV+ AC  L     GK +H Y
Sbjct: 285 --W------------HGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY 330

Query: 452 IRKNGL--KINSI--------LGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALII 500
             K+GL   ++S+        LG+ L+ MY+K G + +A  VF     KG V  WN ++ 
Sbjct: 331 SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG 390

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG-----ACRHMGLVDEGHRHFNSMIQ 555
           G+A  G  ++SL +F +M + G+ P+E     +L      +C   GLV  G+      I 
Sbjct: 391 GYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY------IV 444

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +            ++    ++ M+ +A  +   MP   D  +W +++  C  +G
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGCSSNG 497



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 180/415 (43%), Gaps = 46/415 (11%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + TGLI +T  A+ L+   ++   +   +   +IF  +   N   +  M+ +Y++  +  
Sbjct: 545 VKTGLIGETSLANALLDMYSNCSDWQSTN---QIFRSMGQKNVVSWTAMITSYMRAGLFD 601

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +   L + M+ + +  D +       A A   S+ +GK +H + ++ G +  + V N L+
Sbjct: 602 KVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALM 661

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------------------------- 207
            MY  C ++  AR +FD     D++SWN+++ GY                          
Sbjct: 662 EMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVT 721

Query: 208 --------VNADNVEEAKFIYNKMPERNII----ASNSMIVLFGRKGNVAEACRLFKEMP 255
                    +  ++E  + I+     R  +    ASN+++ ++ + G +  A  LF  + 
Sbjct: 722 MTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLT 781

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           KK+L+SW+ +I+ Y  +   + A+ LF  M    +  D     ++L AC +  +   G  
Sbjct: 782 KKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRR 841

Query: 316 -VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKC 373
              A+  +  IE  +     ++ + S  G++  A +  ++     D   W S++ G    
Sbjct: 842 FFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIH 901

Query: 374 GSVEKARALFDAM--IEKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPD 425
            +V+ A  + D +  +E +   +  +++  YA+ +++     L  ++   G+R +
Sbjct: 902 KNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLREN 956


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 340/571 (59%), Gaps = 32/571 (5%)

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +     ++ ++ R G + +A  +   MP++ +VSW+ +IS Y Q E + EAL LF+ M+ 
Sbjct: 45  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 104

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
              + +E  + +VL++C+    +  G  VH+L VK   E ++ + ++L+ MY+       
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA------- 157

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                                   K  ++++AR +FD + E+DVVS + +ISGYAQ    
Sbjct: 158 ------------------------KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E L LF ++   G++ +  T  ++++A + L +LD GK +HA I +  L     L  +L
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           IDMY K G +  +  VF    E+ V SWNA+++G+  +GL  + + +F ++ K  V P+ 
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           +T + VL  C H GLVDEG   F+++++E     ++ HYGC++DLLGR+G L++A  LIE
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           +MP     + WG+LLGAC+ H +  +GE V +KL+E++P++ G +V+LSNI+A+ G W D
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V +VR +M+ + V K PG S I  + +IH F + +R HP   +I+  + E+   +K  G+
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            PD   V  D+D E+KE  L  HSEKLAI FGL+   P   IR+MKNLRIC DCH  AKF
Sbjct: 493 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 552

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +S+ ++REI +RD++RFH   HG+C+C D+W
Sbjct: 553 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 190/409 (46%), Gaps = 73/409 (17%)

Query: 132 YTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191
           + Y     A   R +++EG+ +H  ++ A +   V++   L+ MY  CG L  AR + D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 192 SPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------P--------------------- 224
            P   +VSW ++++GY   +   EA  ++ KM      P                     
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 130

Query: 225 ------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQN 272
                       E ++   +S++ ++ +  N+ EA R+F  +P++D+VS +A+IS Y Q 
Sbjct: 131 KQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQK 190

Query: 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332
            + EEAL LF  +    +  + V   ++++A + L  +  G  VHAL ++  +  ++ LQ
Sbjct: 191 GLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ 250

Query: 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392
           N+LI MYS CG++  + ++FD      ++SWN+                           
Sbjct: 251 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNA--------------------------- 283

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI-HAY 451
               M+ GY +H    E +SLF ++ H  ++PD  TL++V+S C+H   +D+G  I    
Sbjct: 284 ----MLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTV 338

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           +++    +++     +ID+  + G ++ AL +      E   S W +L+
Sbjct: 339 VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLL 387



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 48/278 (17%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           + TM+  Y Q     +A+ L+  ML      + YT   +  + +   S+++GK +H  ++
Sbjct: 79  WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLV 138

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           K  F+S ++V ++L++MYA   ++  AR++FD  P  D+VS  +I++GY      EEA  
Sbjct: 139 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 198

Query: 219 IYNKMPERN---------------------------------------IIASNSMIVLFG 239
           ++ ++                                           +   NS+I ++ 
Sbjct: 199 LFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYS 258

Query: 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299
           + G +  + R+F  M ++ +VSW+A++  Y ++ +  E + LF ++    V  D V +++
Sbjct: 259 KCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLA 317

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           VLS C++  +V  G  +    VK         Q+AL+H
Sbjct: 318 VLSGCSHGGLVDEGLDIFDTVVK--------EQSALLH 347



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
           + I+AC    AL +G+ +HA +     +    LGT L+ MY++ G +D+A  V     E+
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHF 550
            V SW  +I G++      ++L++F +M ++G  PNE T   VL +C     + +G +  
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG-KQV 133

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +S++ +   E +      ++D+  ++  ++EA  + +++P   DV +  A++    + G 
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISGYAQKGL 192

Query: 611 HEMGERVGRKLVE--LQPDHDGFHVLLSNI 638
            E    + R+L    +Q +H  F  L++ +
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTAL 222



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 42/265 (15%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYS 84
           N   L T L  C   QS  Q  Q+ S ++ T   +  F  S L+    D+    E +  +
Sbjct: 110 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLL----DMYAKSENIQEA 165

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
            ++F  L   +      ++  Y Q+ + ++A+ L++ + +  +  ++ T+  L  A +  
Sbjct: 166 RRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGL 225

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
            S+  GK +H  +L+      V + N+LI+MY+ CG L  +R++FD      +VSWN++L
Sbjct: 226 ASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAML 285

Query: 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVS 261
            GY                               GR G   E   LFK++ K+   D V+
Sbjct: 286 MGY-------------------------------GRHGLGHEVISLFKDLHKEVKPDSVT 314

Query: 262 WSALISCYEQNEMYEEALVLFMNMI 286
             A++S      + +E L +F  ++
Sbjct: 315 LLAVLSGCSHGGLVDEGLDIFDTVV 339


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 332/568 (58%), Gaps = 41/568 (7%)

Query: 240 RKGNVAEACRLFKEMPKK-DLVSWSALISCYEQ-------NEMYEEALVLFMNMIDHRVM 291
           +   ++ A ++F  +P   D+V ++ L+  Y +           EEA  +F+ M++  V 
Sbjct: 80  KPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVA 139

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
            D    VS+L ACA     + G   H +AVK+G   +  +   LI+MY+           
Sbjct: 140 PDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYA----------- 188

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                               +CG    AR +F  +  + VVS++ MI+   +  +  E L
Sbjct: 189 --------------------ECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEAL 228

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            LF EMQ  G++    TL+SV+SAC  L AL+ G+WIH Y+RK  L     + T LIDMY
Sbjct: 229 VLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMY 288

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +++A+ VF G E +   +W+ +I+ +A +    +++ +F EMKK G+ P+++TF+
Sbjct: 289 GKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFL 348

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           GVL AC H GLV EG ++F+SM +E  L P  KHYGC+ DLL R+G L  A E I+ +P+
Sbjct: 349 GVLYACSHSGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPI 407

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P    W  LL AC   GD ++G++V  +++EL   H G +V+ SN+ A+ GRW+++  V
Sbjct: 408 KPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRV 467

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M  +GVVK+PGCS IE +  +HEF AGD  HP+  +   M+D + ++LKL GY P+T
Sbjct: 468 RKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNT 527

Query: 712 LEV-AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
             V   ++ +EEK  +L  HSEKLAI+FGL+  SP   +R++KNLR+C DCH+ AK +S 
Sbjct: 528 SHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSM 587

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            F+R I++RD +RFHHF+ G CSC D+W
Sbjct: 588 VFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 217/524 (41%), Gaps = 77/524 (14%)

Query: 33  LETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTD--LLPFIEMSYSFKIFAF 90
           L  +L +C + +   Q+ +  + +GL A     +RL+   TD       ++SY+ ++F  
Sbjct: 34  LLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDR 93

Query: 91  LESPNGFI-FNTMMRAYIQ-------RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           +  P   + +NT++R Y +       R   ++A  ++  ML   V  D YT+  L +A A
Sbjct: 94  IPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACA 153

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +  EG+  H   +K G     YV  TLINMYA CGD  AAR +F       +VS+N+
Sbjct: 154 AARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNA 213

Query: 203 ILAGYVNADNVEEAKFIYNKMPERN----------------------------------- 227
           ++   V +    EA  ++ +M  +                                    
Sbjct: 214 MITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQ 273

Query: 228 ----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
               +  + ++I ++G+ G++ +A  +F+ M  +D  +WS +I  Y  +    EA+ LF 
Sbjct: 274 LDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFE 333

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  D+V  + VL AC++  +V  G        + G+   I     +  + +  G
Sbjct: 334 EMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSG 393

Query: 344 EITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE------KDVVSWST 396
           ++  A +  D        I W +++S     G  +  + +F+ ++E       D V +S 
Sbjct: 394 QLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSN 453

Query: 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
           + +   + ++ +    L  E             V  +  C+   +++    +H +   +G
Sbjct: 454 LCANTGRWEEMNRVRKLMNEKG-----------VVKVPGCS---SIEVDNRVHEFFAGDG 499

Query: 457 LKINSILGTTLIDMYMK----LGCVDNALEVFH---GTEEKGVS 493
               S+    ++D  ++     G V N   VFH   G EEK VS
Sbjct: 500 RHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVS 543



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 34/308 (11%)

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG-----EITTAEKLFD--AGHNLDL 360
           T ++A   +HA AVK G++ +      L+ + +  G     +++ A ++FD   G   D+
Sbjct: 42  TTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPG-DV 100

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           + +N+++ GY +C +   AR   +                        E   +F+ M   
Sbjct: 101 VWYNTLLRGYARCSAAGGARPPAE------------------------EAARVFVRMLEE 136

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+ PD  T VS++ AC    A ++G+  H    K G   +  +  TLI+MY + G    A
Sbjct: 137 GVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAA 196

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             +F   + + V S+NA+I     +    ++L +F EM+  G+    +T + VL AC  +
Sbjct: 197 RTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALL 256

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           G ++ G R  +  +++ +L+   K    ++D+ G+ G L++A  + + M  S D   W  
Sbjct: 257 GALELG-RWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGME-SRDRQAWSV 314

Query: 601 LLGACKKH 608
           ++ A   H
Sbjct: 315 MIVAYANH 322


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 327/573 (57%), Gaps = 49/573 (8%)

Query: 243 NVAEACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSV 300
           +V  A R+F  +       W+ LI +C       EEA +L+  M++      D+     V
Sbjct: 98  DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L ACA +     G  VH   VK G    + + N LIH+Y SC                  
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC------------------ 199

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                        G ++ AR +FD M E+ +VSW++MI    +  ++   L LF EMQ  
Sbjct: 200 -------------GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR- 245

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN---GLKINSILGTTLIDMYMKLGCV 477
              PD  T+ SV+SAC  L +L  G W HA++ +     + ++ ++  +LI+MY K G +
Sbjct: 246 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 305

Query: 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM--KKSGVTPNEITFVGVLG 535
             A +VF G +++ ++SWNA+I+GFA +G A++++  F  M  K+  V PN +TFVG+L 
Sbjct: 306 RMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLI 365

Query: 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV 595
           AC H G V++G ++F+ M++++ +EP  +HYGC+VDL+ RAG + EA +++ SMPM PD 
Sbjct: 366 ACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDA 425

Query: 596 ATWGALLGACKKHGDH-EMGERVGRKLVELQPDHD-------GFHVLLSNIHASKGRWDD 647
             W +LL AC K G   E+ E + R ++  + D++       G +VLLS ++AS  RW+D
Sbjct: 426 VIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND 485

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  VR +M   G+ K PGCS IE NGI HEF AGD +HPQ  +I   L  +  +L+  GY
Sbjct: 486 VGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545

Query: 708 APDTLEVAF--DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAA 765
            PD  +       +   KE +L  HSE+LAIAFGLI + P  PIRI KNLR+CNDCH   
Sbjct: 546 LPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVT 605

Query: 766 KFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           K IS+ F+ EI+VRDR RFHHFK GSCSC+D+W
Sbjct: 606 KLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 210/462 (45%), Gaps = 64/462 (13%)

Query: 38  QKCQSFKQFTQILSQMILTGLI---ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           + C    Q  Q+ +  + T      A  F   ++++ S+    F +++Y+F++F  +E+ 
Sbjct: 56  ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSS---FSDVNYAFRVFDSIENH 112

Query: 95  NGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKL 152
           + F++NT++RA     +  ++A  LY+ ML       D +T+P + +A A      EGK 
Sbjct: 113 SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQ 172

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  ++K GF  DVYVNN LI++Y  CG L  ARK+FDE P   LVSWNS++   V    
Sbjct: 173 VHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGE 232

Query: 213 VEEAKFIYNKMPER-----------------------------------------NIIAS 231
            + A  ++ +M                                            +++  
Sbjct: 233 YDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 292

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR-- 289
           NS+I ++ + G++  A ++F+ M K+DL SW+A+I  +  +   EEA+  F  M+D R  
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTA 348
           V  + V  V +L AC +   V  G     + V+   IE  +     ++ + +  G IT A
Sbjct: 353 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 412

Query: 349 -EKLFDAGHNLDLISWNSMISGYLKCG-SVEKARALFDAMI--EKDVVSWSTMISG---- 400
            + +       D + W S++    K G SVE +  +   +I  ++D  S +   SG    
Sbjct: 413 IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVL 472

Query: 401 ----YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
               YA   ++++   +   M  HGIR +       I+  +H
Sbjct: 473 LSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 514


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 342/575 (59%), Gaps = 10/575 (1%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +N+++ ++G+ G  + A ++F EMP +D ++W+++++   Q  +  + L +F ++     
Sbjct: 41  ANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSG 100

Query: 291 M-VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEIT 346
           +  D+ V  +++ ACANL  +  G  VH   +   +  Y N   ++++L+ MY+ CG + 
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFI---VSEYANDEVVKSSLVDMYAKCGLLN 157

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
           +A+ +FD+    + ISW +M+SGY K G  E+A  LF  +  K++ SW+ +ISG+ Q  +
Sbjct: 158 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGK 217

Query: 407 FSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
             E  S+F EM+   +   D   L S++ AC +L A   G+ +H  +   G      +  
Sbjct: 218 GLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISN 277

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            LIDMY K   V  A ++F     + V SW +LI+G A +G A+K+L ++ +M   GV P
Sbjct: 278 ALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP 337

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE+TFVG++ AC H+G V++G   F SM +++ + P+ +HY C++DLLGR+G+L EAE L
Sbjct: 338 NEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENL 397

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV-ELQPDHDGFHVLLSNIHASKGR 644
           I +MP  PD  TW ALL ACK+ G  +MG R+   LV   +      ++LLSNI+AS   
Sbjct: 398 IHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASL 457

Query: 645 WDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704
           W  V E R  +    V K PG S +E       F AG+ +HP   +I  +L ++ +++++
Sbjct: 458 WGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRI 517

Query: 705 E-GYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             GY PDT  +  D+D++EKE  LF HSE+ A+A+GL+   P  PIRI+KNLR+C DCH 
Sbjct: 518 RNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHV 577

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K IS   +REI+VRD  R+HHFK G CSC DFW
Sbjct: 578 VLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 141/334 (42%), Gaps = 79/334 (23%)

Query: 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF 189
           D++ +  L +A A   S+  G+ +H H + + + +D  V ++L++MYA CG L++A+ +F
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163

Query: 190 DES-------------------------------PVLDLVSWNSILAGYVNADNVEEAKF 218
           D                                 PV +L SW ++++G+V +    EA  
Sbjct: 164 DSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFS 223

Query: 219 IYNKMPERNI----------------------------------------IASNSMIVLF 238
           ++ +M    +                                          SN++I ++
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 283

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            +  +V  A  +F  M  +D+VSW++LI    Q+   E+AL L+ +M+ H V  +EV  V
Sbjct: 284 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFV 343

Query: 299 SVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            ++ AC+++  V+ G  +  ++    GI   +     L+ +    G +  AE L    H 
Sbjct: 344 GLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLI---HT 400

Query: 358 L----DLISWNSMISGYLKCGSVEKARALFDAMI 387
           +    D  +W +++S   + G  +    + D ++
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLV 434



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASA 142
           + ++F  L   N + +  ++  ++Q     +A  ++  M    V + D      +  A A
Sbjct: 190 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 249

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              +   G+ +H  V+  GFDS V+++N LI+MYA C D+ AA+ +F      D+VSW S
Sbjct: 250 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 309

Query: 203 ILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMPK-- 256
           ++ G       E+A  +Y+ M    +    +    +I      G V +   LF+ M K  
Sbjct: 310 LIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDY 369

Query: 257 ---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
                L  ++ L+    ++ + +EA  L   M       DE    ++LSAC
Sbjct: 370 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 417



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
           C     L   K +HA+I K G+     L  TL+++Y K G   +AL+VF     +   +W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 496 NALIIGFAMNGLADKSL-EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR-HFNSM 553
            +++       L+ K+L    S    SG+ P++  F  ++ AC ++G +D G + H + +
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132

Query: 554 IQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           + E+  +   K    +VD+  + G+L  A+ + +S+ +  +  +W A++    K G  E
Sbjct: 133 VSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKSGRKE 188


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/580 (38%), Positives = 332/580 (57%), Gaps = 33/580 (5%)

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +  +P    ++  ++ + F + G +  A  LF EMP +++V+W+A+++    +    E +
Sbjct: 40  FGYLPVDPFVSCAALDMYF-KTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETI 98

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             +  + +   + + V   +  +ACA    +  G   H   VK G E             
Sbjct: 99  EAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFE------------- 145

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                             +D+   NSM+  Y KC    KARA+FD M  ++ VSW +M++
Sbjct: 146 ------------------MDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVA 187

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            YAQ+    E  + ++  +  G  P +  + S ++ C  L+ L  G+ +HA   ++ +  
Sbjct: 188 AYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA 247

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  + + L+DMY K GCV++A ++F+ T ++ + +WNA+I G+A  G A  +L +F +M 
Sbjct: 248 NIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMI 307

Query: 520 KSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +SG T PN IT V V+ +C   GL  +G+  F +M +   +EP ++HY C+VDLLGRAGM
Sbjct: 308 RSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGM 367

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            ++A E+I+ MPM P ++ WGALLGACK HG  E+G     KL EL P   G HVLLSN+
Sbjct: 368 EEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNM 427

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
            AS GRW +  ++R  M   G+ K PGCS +    ++H F A D  H   NEI  +L ++
Sbjct: 428 FASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKL 487

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K+++  GY PDT    +D+++EEKE+ +F+HSEKLA+AFGLI I P  PIRIMKNLRIC
Sbjct: 488 RKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRIC 547

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH A KFIS    REI+VRD +RFHHFK   CSC D+W
Sbjct: 548 VDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 184/429 (42%), Gaps = 75/429 (17%)

Query: 122 MLNNNVGVDNYTYP--LLAQASALRLSVFEGKLIHDHVLKAGF-DSDVYVNNTLINMYAV 178
           ML   +  +++T+P    A ASA   S   G  IH   ++ G+   D +V+   ++MY  
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTI-GPQIHSLAIRFGYLPVDPFVSCAALDMYFK 59

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYV-------------------NADNVEEAKFI 219
            G L  AR LF E P  ++V+WN+++   V                      NV  A   
Sbjct: 60  TGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAF 119

Query: 220 YNKMP--------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
           +N                       E ++   NSM+  +G+     +A  +F  M  ++ 
Sbjct: 120 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 179

Query: 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHAL 319
           VSW ++++ Y QN   EEA   ++          + +V S L+ CA L  +  G ++HA+
Sbjct: 180 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 239

Query: 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKA 379
           AV+  I+  I + +AL+ MY  CG +  AE++F      +L++WN+MI GY   G  + A
Sbjct: 240 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 299

Query: 380 RALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439
             +FD MI                     ET             P+  TLV+VI++C+  
Sbjct: 300 LLVFDDMIRS------------------GETA------------PNYITLVNVITSCSRG 329

Query: 440 VALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNA 497
                G  +   +R+  G++  +     ++D+  + G  + A EV  G   +  +S W A
Sbjct: 330 GLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGA 389

Query: 498 LIIGFAMNG 506
           L+    M+G
Sbjct: 390 LLGACKMHG 398



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A A A+ LS+  G+  H  V+K GF+ DV V N++++ Y  C     AR +FD   V + 
Sbjct: 122 ACAGAMYLSL--GEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 179

Query: 198 VSWNSILAGYVNADNVEEAKFIY------NKMP--------------------------- 224
           VSW S++A Y      EEA   Y       + P                           
Sbjct: 180 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 239

Query: 225 ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                 + NI  +++++ ++G+ G V +A ++F E P+++LV+W+A+I  Y      + A
Sbjct: 240 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 299

Query: 279 LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALI 336
           L++F +MI       + + +V+V+++C+   + K G  +   +  + GIE        ++
Sbjct: 300 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 359

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKARALFDAMIE---KDVV 392
            +    G    A ++         IS W +++      G  E  R   + + E   +D  
Sbjct: 360 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 419

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +   + + +A   +++E   +  EM++ GI+ D
Sbjct: 420 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKD 452



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 5/176 (2%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   + +M+ AY Q    ++A   Y     +     ++         A  L 
Sbjct: 170 VFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLG 229

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ +H   +++  D++++V + L++MY  CG +  A ++F E+P  +LV+WN+++ G
Sbjct: 230 LHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGG 289

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN-----SMIVLFGRKGNVAEACRLFKEMPKK 257
           Y +  + + A  +++ M      A N     ++I    R G   +   LF+ M ++
Sbjct: 290 YAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRER 345



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 4/198 (2%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQ-GKWIHAY-IRKNGLKINSILGTTLIDMYMKL 474
           M   G+RP++ T  S   A          G  IH+  IR   L ++  +    +DMY K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A  +F     + V +WNA++    ++G   +++E +  ++++G  PN ++     
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC     +  G + F+  + +   E +      MVD  G+     +A  + + M +   
Sbjct: 121 NACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 179

Query: 595 VATWGALLGACKKHGDHE 612
           V +W +++ A  ++G  E
Sbjct: 180 V-SWCSMVAAYAQNGAEE 196


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 342/572 (59%), Gaps = 8/572 (1%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRV 290
           N+++  +G+   + +A  LF EMP++D VSW+++++ Y Q ++  + L +F  M    R+
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN---LQNALIHMYSSCGEITT 347
             D  V  ++L ACA+L  ++ G  VHA  V   +  +++   ++++L+ MY+ CG  + 
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFV---LSPFVDDDVVKSSLVDMYAKCGLPSI 157

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A  +FD+      +SW +M+SGY + G  ++A  LF     +++ SW+ +ISG  Q    
Sbjct: 158 ARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYC 217

Query: 408 SETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
            +   +F+EM+  G+   D   L SV+ AC +L  L  GK IH  +  +G +    +   
Sbjct: 218 IDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNA 277

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
           L+DMY K   +  A  VF+    + V SW ++I+G A +G A ++L+++ +M  + + PN
Sbjct: 278 LVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPN 337

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
           E+TFVG++ AC H GLV +G + F +MI+++R+ P+ + + C +DLL R+G L EAE+LI
Sbjct: 338 EVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLI 397

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
           ++MP  PD  TW ALL ACK HG+ EMG R+  +L+ L       +VLLSN++A  G+W+
Sbjct: 398 KTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWE 457

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            +  VR +M    V + PG S I+       F AG+  HP  +EI  +L E+  +++  G
Sbjct: 458 QMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRG 517

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  D++++EKE  LF HSE+ A+A+GL+   P   IRI+KNLRIC DCHT  K
Sbjct: 518 YIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLK 577

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             S    +EI+VRD  R+HHFK G CSC DFW
Sbjct: 578 LTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 165/400 (41%), Gaps = 80/400 (20%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           + +++ AY Q  +P + + ++  M   + +  D++ Y  L +A A   S+  GK +H   
Sbjct: 71  WASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARF 130

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD--------------------------- 190
           + + F  D  V ++L++MYA CG  S AR +FD                           
Sbjct: 131 VLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAM 190

Query: 191 ----ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---------------------- 224
                +PV +L SW ++++G V +    +  +++ +M                       
Sbjct: 191 ELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANL 250

Query: 225 ------------------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                             E  +  SN+++ ++ +  ++  A  +F  M  +D+VSW+++I
Sbjct: 251 AVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSII 310

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGI 325
               Q+   +EAL L+  M+   +  +EV  V ++ AC++  +V  G  +  A+     I
Sbjct: 311 VGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRI 370

Query: 326 ECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFD 384
              + L    + + S  G +  AE L     H  D  +W +++S     G+ E    + D
Sbjct: 371 SPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIAD 430

Query: 385 AMIEKDVVSWSTMI------SGYAQHDQFSETLSLFMEMQ 418
            ++  ++   ST +      +G  + +Q S    L  +M+
Sbjct: 431 RLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDME 470



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 152/388 (39%), Gaps = 82/388 (21%)

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L  C           +HA  VK G+     L N L+  Y  C  +  A  LFD     D 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           +SW S+++ Y +     K  ++F  M   D                              
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTD------------------------------ 98

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            ++PD     +++ AC  L +L  GK +HA    +    + ++ ++L+DMY K G    A
Sbjct: 99  RLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIA 158

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE--------------------------- 513
             VF     K   SW A++ G+A +GL D+++E                           
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCI 218

Query: 514 ----MFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC 568
               MF EM++ GV   + +    V+GAC ++ ++  G        Q H L   S +  C
Sbjct: 219 DGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGK-------QIHGLVIGSGYESC 271

Query: 569 ------MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622
                 +VD+  +   +  A  +   M +  DV +W +++    +HG  +    +  ++V
Sbjct: 272 LFISNALVDMYAKCSDILAARNVFNRM-LHRDVVSWTSIIVGAAQHGRAKEALDLYDQMV 330

Query: 623 --ELQPDHDGF-HVLLSNIHA---SKGR 644
             E++P+   F  ++ +  HA   SKGR
Sbjct: 331 LAEIKPNEVTFVGLIYACSHAGLVSKGR 358


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 327/572 (57%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   +S++ L+ R G + +A ++F  MP++D V+WS +++ +       +A+ ++  M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  DEVV++ V+ AC     V+ G SVH                             
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHG---------------------------- 233

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
               L   G  +D+++  S++  Y K G ++ A  +F  M+ ++ VSWS MISG+AQ+ Q
Sbjct: 234 ---HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF  MQ  GI+PD   LVS + AC+++  L  G+ +H +I +     N ILGT 
Sbjct: 291 SDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTA 349

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            IDMY K G + +A  +F+   ++ +  WNA+I     +G    +L +F EM ++G+ P+
Sbjct: 350 AIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD 409

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF  +L A  H GLV+EG   F  M+   ++ P  KHY C+VDLL R+G+++EA +L+
Sbjct: 410 HATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            SM   P VA W ALL  C  +   E+GE +   ++ELQPD  G   L+SN++A+  +WD
Sbjct: 470 TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWD 529

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V +VR +M   G  K+PGCS IE  G  H FL  D++HPQ  EI + + ++  +++  G
Sbjct: 530 KVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMG 589

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y P T  V  D+++E KE  L  HSEKLAIAFGL+   P   + I+KNLR+C DCH A K
Sbjct: 590 YIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIK 649

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +IS+  DREIVVRD  RFHHFK G CSC D+W
Sbjct: 650 YISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 212/451 (47%), Gaps = 84/451 (18%)

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +R  P  A+ +++  L      D+ T+ L   A A    +  G+ + D    AG+  DV+
Sbjct: 86  RRGSPASALRVFR-ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-- 225
           V ++L+++YA  G +  A K+FD  P  D V+W++++AG+V+A    +A  +Y +M E  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 226 ------------------RN-------------------IIASNSMIVLFGRKGNVAEAC 248
                             RN                   ++ + S++ ++ + G +  AC
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+F  M  ++ VSWSA+IS + QN   +EAL LF NM    +  D   +VS L AC+N+ 
Sbjct: 265 RVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 309 VVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
            +K G SVH   V +    C   L  A I MYS CG + +A+ LF+   + DLI WN+MI
Sbjct: 325 FLKLGRSVHGFIVRRFDFNCI--LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +    CG+                            H +  + L+LF EM   G+RPD A
Sbjct: 383 AC---CGA----------------------------HGRGQDALTLFQEMNETGMRPDHA 411

Query: 428 TLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVF 484
           T  S++SA +H   +++GK W    +  N  KI         L+D+  + G V+ A ++ 
Sbjct: 412 TFASLLSALSHSGLVEEGKLWFGCMV--NHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 485 HGTE-EKGVSSWNALIIGFAMNGLADKSLEM 514
              + E  V+ W AL+ G     L +K LE+
Sbjct: 470 TSMKAEPTVAIWVALLSGC----LNNKKLEL 496



 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 172/351 (49%), Gaps = 36/351 (10%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D       LSACA L  ++ G SV                                ++ F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVR-------------------------------DRAF 135

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           DAG+  D+   +S++  Y + G++  A  +FD M  +D V+WSTM++G+    Q  + + 
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQ 195

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           ++  M+  G++ DE  ++ VI ACT    +  G  +H ++ ++G++++ +  T+L+DMY 
Sbjct: 196 MYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYA 255

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D A  VF     +   SW+A+I GFA NG +D++L +F  M+ SG+ P+    V 
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            L AC ++G +  G      +++  R + N       +D+  + G L  A+ L  +M   
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVR--RFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISD 372

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS 641
            D+  W A++  C  HG  +    + +++ E  ++PDH  F  LLS +  S
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 170/396 (42%), Gaps = 77/396 (19%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + K+F  +   +   ++TM+  ++    P  AI +Y+ M  + V  D      + QA
Sbjct: 159 MGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +V  G  +H H+L+ G   DV    +L++MYA  G L  A ++F      + VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PER---------------------------- 226
           +++++G+      +EA  ++  M      P+                             
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 227 ----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
               N I   + I ++ + G++A A  LF  +  +DL+ W+A+I+C   +   ++AL LF
Sbjct: 339 RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLF 398

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342
             M +  +  D     S+LSA ++  +V+ G        K+   C +N      H     
Sbjct: 399 QEMNETGMRPDHATFASLLSALSHSGLVEEG--------KLWFGCMVN------HF---- 440

Query: 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMISGY 401
            +IT AEK +     +DL++         + G VE+A  L  +M  E  V  W  ++SG 
Sbjct: 441 -KITPAEKHYVC--LVDLLA---------RSGLVEEASDLLTSMKAEPTVAIWVALLSGC 488

Query: 402 AQHDQFSETLSL---FMEMQHHGIRPDEATLVSVIS 434
             + +     S+    +E+Q     PD+  +++++S
Sbjct: 489 LNNKKLELGESIADNILELQ-----PDDVGVLALVS 519



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 23/247 (9%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RPD  T    +SAC  L  L  G+ +       G K +  + ++L+ +Y + G + +A++
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR---- 538
           VF     +   +W+ ++ GF   G    +++M+  M++ GV  +E+  +GV+ AC     
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 539 -HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             MG    GH      +  H +  +      +VD+  + G+L  A  +   M    DV +
Sbjct: 225 VRMGASVHGH------LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV-S 277

Query: 598 WGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL---SNIHASK-GRWDDVLEV 651
           W A++    ++G  +   R+ R +    +QPD       L   SNI   K GR      V
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR-----SV 332

Query: 652 RGMMVRR 658
            G +VRR
Sbjct: 333 HGFIVRR 339


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/540 (40%), Positives = 314/540 (58%), Gaps = 35/540 (6%)

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRV--MVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           + +I  Y Q     +AL LF++M+        D+     +L +CA L   + G  +H L 
Sbjct: 63  NTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLI 122

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            K G+E    + N LIHMYSS                               CG   +A 
Sbjct: 123 YKSGLESDRYVSNGLIHMYSS-------------------------------CGKSGRAY 151

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +F  M ++DVVSW++MI G+   D+  E + LF EM   G+ P+EAT+VSV+ AC    
Sbjct: 152 KVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAG 211

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           A+  G+ +   I +  + + + + T LIDMY K G + +A +VF G   K V +W A+I 
Sbjct: 212 AVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMIS 271

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
           G A +GL ++++ +F +M+  G+ P+E T   VL ACR+ G   EG  +FNSM  ++ ++
Sbjct: 272 GLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIK 331

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV--G 618
           P  +HYGCMVDLL R G L EAEE I  MP+ PDV  W  L+ A K HGD +  E++   
Sbjct: 332 PTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKD 391

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
           R L+++  D  G +VLL N++AS G+W D  ++R +M ++G+ K PGCS IE +G++HEF
Sbjct: 392 RGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEF 451

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
            AGD  H +  +I   LDE+ ++LK EGY P   EV  +ID +EK   L  HSEKLA+AF
Sbjct: 452 AAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAF 511

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           GLI  SP   IRI+KNLR C DCH+  K IS+ + ++I+VRDR RFHHF +G CSC D+W
Sbjct: 512 GLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 177/389 (45%), Gaps = 51/389 (13%)

Query: 150 GKLIHDH-VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLF------DESPVLDLVSWNS 202
           G L + H +L +    + + +NT+I  Y+   D + A  LF        SP  D  ++  
Sbjct: 42  GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101

Query: 203 ILAGYVNADNVEEAK----FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           +L            K     IY    E +   SN +I ++   G    A ++F +M  +D
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
           +VSW+++I  +  ++   EA+ LF  M++  V  +E  VVSVL ACA+   V  G  V  
Sbjct: 162 VVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQG 221

Query: 319 L--AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           +    KIG+E   N++ ALI MY+ CG I +A K+FD   N D+ +W +MISG    G  
Sbjct: 222 VIEERKIGLEA--NVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLC 279

Query: 377 EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
           E+A  LFD                               +M+  G+RPDE T+ +V+SAC
Sbjct: 280 EEAVTLFD-------------------------------QMESFGLRPDERTMTAVLSAC 308

Query: 437 THLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSS 494
            +     +G  + ++   K G+K        ++D+  + G +D A E       E  V  
Sbjct: 309 RNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVL 368

Query: 495 WNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           W  LI    ++G  D+S ++   MK  G+
Sbjct: 369 WRTLIWASKVHGDIDRSEQL---MKDRGL 394



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 186/420 (44%), Gaps = 49/420 (11%)

Query: 75  LLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV--DNY 132
           L P  +++Y+  I   L + N F  NTM+RAY Q   P QA+ L+  ML        D +
Sbjct: 38  LSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKF 97

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
           TYP L ++ A       GK +H  + K+G +SD YV+N LI+MY+ CG    A K+F + 
Sbjct: 98  TYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKM 157

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV---------------- 236
              D+VSW S++ G+V+ D   EA  ++ +M E  +  + + +V                
Sbjct: 158 RDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGR 217

Query: 237 -----------------------LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                                  ++ + G++  A ++F  +  KD+ +W+A+IS    + 
Sbjct: 218 RVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG 277

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQ 332
           + EEA+ LF  M    +  DE  + +VLSAC N      G +  +++  K GI+  I   
Sbjct: 278 LCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHY 337

Query: 333 NALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFD-----AM 386
             ++ + +  G +  AE+         D++ W ++I      G ++++  L        M
Sbjct: 338 GCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKM 397

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQG 445
              D  S+  + + YA   ++ +   +   M   G+ +P   + + V        A D G
Sbjct: 398 DSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSG 457



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 4/238 (1%)

Query: 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVS 431
           G +  A  + +++  ++    +TMI  Y+Q    ++ L LF+ M  Q    RPD+ T   
Sbjct: 42  GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           ++ +C  L     GK +H  I K+GL+ +  +   LI MY   G    A +VF    ++ 
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           V SW ++I GF  +  A +++ +F EM + GV PNE T V VL AC   G V  G R   
Sbjct: 162 VVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMG-RRVQ 220

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
            +I+E ++   +     ++D+  + G +  A ++ + + ++ DV  W A++     HG
Sbjct: 221 GVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGI-VNKDVFAWTAMISGLANHG 277


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 334/568 (58%), Gaps = 32/568 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRV 290
           + ++ ++ + G   +A RLF EMP KDLVSW++L+S           L  F  M  +   
Sbjct: 101 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 160

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             +EV ++SV+SACA++  +  G S+H + VK+G+     + N+LI+MY           
Sbjct: 161 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYG---------- 210

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                K G ++ A  LF+ M  + +VSW++M+  +  +    + 
Sbjct: 211 ---------------------KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKG 249

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + LF  M+  GI PD+AT+V+++ ACT      Q + IHAYI + G   + I+ T L+++
Sbjct: 250 MDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNL 309

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y KLG ++ + ++F   +++   +W A++ G+A++    +++++F  M K GV  + +TF
Sbjct: 310 YAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF 369

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
             +L AC H GLV+EG ++F  M + +R+EP   HY CMVDLLGR+G L++A ELI+SMP
Sbjct: 370 THLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMP 429

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           M P    WGALLGAC+ +G+ E+G+ V  +L+ L P     +++LSNI+++ G W D  +
Sbjct: 430 MEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASK 489

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR +M  R + + PGCS IE    IH F+ GD+ HP+ +EI   L+E+ +K++  G AP 
Sbjct: 490 VRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPK 549

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  DID+E K   + +HSEKLAIAFGL+      P+ I KNLRIC DCH+ AKF S 
Sbjct: 550 TEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASL 609

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R I++RD  RFHHF  G CSC D+W
Sbjct: 610 LEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 183/415 (44%), Gaps = 53/415 (12%)

Query: 22  PIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           P F+    +  L   +  C S    + I +++I +   +D F   RL+        + ++
Sbjct: 57  PPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSM------YFKL 110

Query: 82  SY---SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLL 137
            Y   + ++F  + + +   +N++M     R      +  + ++   +    +  T   +
Sbjct: 111 GYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 170

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
             A A   ++ EGK +H  V+K G      V N+LINMY   G L AA +LF+E PV  L
Sbjct: 171 VSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSL 230

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKM------PER------------------------- 226
           VSWNS++  + +    E+   ++N M      P++                         
Sbjct: 231 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 290

Query: 227 --------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                   +II + +++ L+ + G +  +  +F+E+  +D ++W+A+++ Y  +    EA
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 350

Query: 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIH 337
           + LF  M+   V VD V    +LSAC++  +V+ G     +  ++  +E  ++  + ++ 
Sbjct: 351 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 410

Query: 338 MYSSCGEITTAEKLFDAGHNLDLIS--WNSMISGYLKCGSVEKARALFDAMIEKD 390
           +    G +  A +L  +   ++  S  W +++      G+VE  + + + ++  D
Sbjct: 411 LLGRSGRLEDAYELIKS-MPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 464


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 341/582 (58%), Gaps = 20/582 (3%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           N+++ L+      + A +LF  +P   KD V ++ALI C        +AL  ++ M    
Sbjct: 53  NALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALIRCSHP----LDALRFYLQMRQRA 108

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           + +D V ++  L AC+ L        +H   VK G   +  + N ++  Y  CG +  A 
Sbjct: 109 LPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEAR 168

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++F+      ++SW  ++ G +KC  VE  + +FD M E++ V+W+ +I GY       E
Sbjct: 169 RVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKE 228

Query: 410 TLSLFMEMQH---HGIRPDEATLVSVISACTHLVALDQGKWIHAY-IRKNGLKINSILGT 465
              L  EM      G   +  TL SV+SAC+    +  G+W+H Y ++  G  +  ++GT
Sbjct: 229 AFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGT 288

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +L+DMY K G +  AL VF     + V +WNA++ G AM+G+    +EMF+ M +  V P
Sbjct: 289 SLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKP 347

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           + +TF+ +L +C H GLV++G ++F+ + + + + P  +HY CMVDLLGRAG L+EAE+L
Sbjct: 348 DAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDL 407

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645
           ++ +P+ P+    G+LLGAC  HG   +GE++ R+LV++ P +  +H+LLSN++A  G+ 
Sbjct: 408 VKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKA 467

Query: 646 DDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLE 705
           D    +R ++  RG+ K+PG S I  +G +H F+AGD++HP+  +I   LD+M  KL+L 
Sbjct: 468 DKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLA 527

Query: 706 GYAPDT-LEVAFDIDQ--------EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLR 756
           GY P+T  +V F            EE E  LF HSEKLA+ FGL++    +P+ I KNLR
Sbjct: 528 GYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLR 587

Query: 757 ICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IC DCH+A K  S  + REIVVRDR+RFH FK GSCSC D+W
Sbjct: 588 ICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/524 (21%), Positives = 212/524 (40%), Gaps = 134/524 (25%)

Query: 77  PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT--- 133
           P  ++  +  +   L SP+ F+ N ++  Y    +P  A  L+  + +++    +YT   
Sbjct: 30  PGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALI 89

Query: 134 ---YPLLA-------QASALRL-------------SVFEGKLI---HDHVLKAGFDSDVY 167
              +PL A       +  AL L              + +  L+   H  V+K GF     
Sbjct: 90  RCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTK 149

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           V N +++ Y  CG +  AR++F+E     +VSW  +L G V  + VE  K ++++MPERN
Sbjct: 150 VLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERN 209

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI- 286
            +A                               W+ LI  Y  +   +EA +L   M+ 
Sbjct: 210 EVA-------------------------------WTVLIKGYVGSGFTKEAFLLLKEMVF 238

Query: 287 --DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCG 343
                  ++ + + SVLSAC+    V  G  VH  AVK +G +  + +  +L+ MY+ CG
Sbjct: 239 GCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCG 298

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            I+ A  +F      ++++WN+M+ G    G  +    +F  M+E+              
Sbjct: 299 RISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-------------- 344

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSI 462
                             ++PD  T ++++S+C+H   ++QG ++ H   R  G++    
Sbjct: 345 ------------------VKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIE 386

Query: 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522
               ++D+  + G ++ A ++                                  +KK  
Sbjct: 387 HYACMVDLLGRAGRLEEAEDL----------------------------------VKKLP 412

Query: 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           + PNE+    +LGAC   G +  G +    ++Q   ++P +  Y
Sbjct: 413 IPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQ---MDPLNTEY 453



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 142/384 (36%), Gaps = 79/384 (20%)

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIECYIN--LQNALIHMYSSCGEITTAEKLFDA-G 355
           S+L  CA  + V+ G  +HA A   G+    +  L NAL+H+Y+SC   + A KLFD   
Sbjct: 17  SLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIP 76

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
           H+                               KD V ++ +I      D     L  ++
Sbjct: 77  HS------------------------------HKDSVDYTALIRCSHPLD----ALRFYL 102

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475
           +M+   +  D   L+  + AC+ L   +    +H  + K G   ++ +   ++D Y+K G
Sbjct: 103 QMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCG 162

Query: 476 CVDNALEVFHGTEEKGVSS-------------------------------WNALIIGFAM 504
            V  A  VF   EE  V S                               W  LI G+  
Sbjct: 163 LVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVG 222

Query: 505 NGLADKSLEMFSEMKKS---GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           +G   ++  +  EM      G   N IT   VL AC   G V  G       ++    + 
Sbjct: 223 SGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDL 282

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621
                  +VD+  + G +  A  +   MP   +V  W A+L     HG   MG+ V    
Sbjct: 283 GVMVGTSLVDMYAKCGRISAALMVFRHMPRR-NVVAWNAMLCGLAMHG---MGKVVVEMF 338

Query: 622 V----ELQPDHDGFHVLLSNIHAS 641
                E++PD   F  LLS+   S
Sbjct: 339 ACMVEEVKPDAVTFMALLSSCSHS 362



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 126/280 (45%), Gaps = 22/280 (7%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN---NVGVDNYTYPLLAQASAL 143
           +F  +   N   +  +++ Y+     ++A  L K M+       G+++ T   +  A + 
Sbjct: 201 VFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQ 260

Query: 144 RLSVFEGKLIHDHVLKA-GFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              V  G+ +H + +KA G+D  V V  +L++MYA CG +SAA  +F   P  ++V+WN+
Sbjct: 261 SGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNA 320

Query: 203 ILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMP---- 255
           +L G       +    ++  M E    + +   +++      G V +  + F ++     
Sbjct: 321 MLCGLAMHGMGKVVVEMFACMVEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYG 380

Query: 256 -KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314
            + ++  ++ ++    +    EEA  L   +    +  +EVV+ S+L AC     ++ G 
Sbjct: 381 IRPEIEHYACMVDLLGRAGRLEEAEDLVKKL---PIPPNEVVLGSLLGACYAHGKLRLGE 437

Query: 315 SVHALAVK---IGIECYINLQNALIHMYSSCGEITTAEKL 351
            +    V+   +  E +I L N    MY+ CG+   A  L
Sbjct: 438 KIMRELVQMDPLNTEYHILLSN----MYALCGKADKANSL 473


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/435 (44%), Positives = 288/435 (66%)

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+++  Y K G  + A  +F+ M +KDV+SW+++++G   +  + E L LF EM+  GI 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD+  + +V+SAC  L  L+ GK +HA   K+GL  +  +  +L+ MY K GC+++A +V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F   E + V +W ALI+G+A NG   +SL  +++M  SGV P+ ITF+G+L AC H GLV
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
           + G  +F SM + + ++P  +HY CM+DLLGR+G L EA+EL+  M + PD   W ALL 
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKI 663
           AC+ HG+ E+GER    L EL+P +   +VLLSN++++ G+W++  + R +M  RGV K 
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305

Query: 664 PGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK 723
           PGCS IE +  +H F++ DR+HP+  EI + +DE+   +K  GY PD      D+D+E K
Sbjct: 306 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 365

Query: 724 ETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           E  L  HSEKLA+AFGL+T+ P  PIRI KNLRIC DCHTA K++S  F R +++RD + 
Sbjct: 366 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNC 425

Query: 784 FHHFKHGSCSCMDFW 798
           FHHF+ G+CSC D+W
Sbjct: 426 FHHFREGACSCSDYW 440



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 136/306 (44%), Gaps = 52/306 (16%)

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
           VNN L++MYA  G    A  +F++    D++SW S++ G V+  + EEA  ++ +M    
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 224 --PERNIIAS---------------------------------NSMIVLFGRKGNVAEAC 248
             P++ +IA+                                 NS++ ++ + G + +A 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           ++F  M  +D+++W+ALI  Y QN    E+L  + BMI   V  D +  + +L AC++  
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 309 VVKAGTSV-----HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLIS 362
           +V+ G S          +K G E Y      +I +    G++  A++L +      D   
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYA----CMIDLLGRSGKLMEAKELLNQMAVQPDATV 239

Query: 363 WNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           W ++++     G+VE      + + E   K+ V +  + + Y+   ++ E       M+ 
Sbjct: 240 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 299

Query: 420 HGIRPD 425
            G+  +
Sbjct: 300 RGVSKE 305



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521
           ++   L+DMY K G  D A +VF    +K V SW +L+ G   NG  +++L +F EM+  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581
           G+ P++I    VL AC  + +++ G +  ++   +  L  +      +V +  + G +++
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFG-KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 582 AEELIESMPMSPDVATWGALLGACKKHG 609
           A ++ +SM +  DV TW AL+    ++G
Sbjct: 122 ANKVFDSMEIQ-DVITWTALIVGYAQNG 148



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 43/227 (18%)

Query: 83  YSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142
           Y+F +F  +   +   + +++   +     ++A+ L+  M    +  D      +  A A
Sbjct: 20  YAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 79

Query: 143 LRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
             L+V E GK +H + LK+G  S + V+N+L++MYA CG +  A K+FD   + D+++W 
Sbjct: 80  -ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWT 138

Query: 202 SILAGYVNADNVEEAKFIYNKM------PE--------------------RNIIAS---- 231
           +++ GY       E+   YN M      P+                    R+   S    
Sbjct: 139 ALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEV 198

Query: 232 ----------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALIS 267
                       MI L GR G + EA  L  +M  + D   W AL++
Sbjct: 199 YGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 334/567 (58%), Gaps = 2/567 (0%)

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI-DHRVMV 292
           ++  + R   + +A R F + P++DL  +SAL++    +   E  L L   M+ D  +  
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D  V+ S+ SA   L  ++ G  +HA            ++++LI MY  CG    A K+F
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           D+    + + W ++ISGY   G   +A  LF +M    + +W+ +ISG+ +   ++  + 
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMG 221

Query: 413 LFMEMQHHGIRPDEA-TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           LF+EM+   IR  +A  L +VI     L AL  G+ +H ++ + G   + I+G  L+DMY
Sbjct: 222 LFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMY 281

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K   + +A EVF G   + V SW  +++G A +G A++   +++ M  +G+ PNE+TFV
Sbjct: 282 SKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFV 341

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           G++ AC H GLV +G + F+SM +E+ ++P  +HY C +DLL R+G L EAE+LI +MP 
Sbjct: 342 GLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPY 401

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD ATWGALL ACKKH D +M  RV   L+EL+P     ++LLSN++A   +WD V +V
Sbjct: 402 EPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKV 461

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M    + K+PG S +EA      F AG+       EI   L+E+  +++  GY PDT
Sbjct: 462 RKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPDT 521

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+++ EKE  LF HSE+LA+AFG++   P + IR++KNLR+C DCHT  KFIS  
Sbjct: 522 SSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISAI 581

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             R+I+VRD  RFHHF+ G+CSC +FW
Sbjct: 582 AQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 192/417 (46%), Gaps = 68/417 (16%)

Query: 89  AFLESPNG--FIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRL 145
           AF ++P     +++ ++ A    + P+  + L + ML+++ +  D++    LA A+    
Sbjct: 58  AFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLR 117

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S+  G+ +H H   + + +D  V ++LI+MY  CG    ARK+FD   V + V W ++++
Sbjct: 118 SLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALIS 177

Query: 206 GYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSAL 265
           GY                      ASN         G   EA  LF+ MP   L +W+AL
Sbjct: 178 GY----------------------ASN---------GCTGEALDLFQSMPAHGLFTWTAL 206

Query: 266 ISCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           IS + +   Y  A+ LF+ M    + + D  V+ +V+   A+L  +  G  +H   +++G
Sbjct: 207 ISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLG 266

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
               + + NAL+ MYS C +I +A ++F+     D+ISW +++ G               
Sbjct: 267 FLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVG--------------- 311

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
                            AQH +  E  +L+  M   G++P+E T V +I AC+H   + +
Sbjct: 312 ----------------EAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQK 355

Query: 445 GKWIHAYI-RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALI 499
           G+ +   + R+ G+K      T  +D+  + G +  A ++      E   ++W AL+
Sbjct: 356 GRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALL 412



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 32/232 (13%)

Query: 311 KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGY 370
           +A   VHA  +K G+                  ++ +A  L              ++S Y
Sbjct: 18  RAVRRVHARLLKEGL-----------------ADLPSAPAL--------------LVSAY 46

Query: 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM-QHHGIRPDEATL 429
            +   +  AR  FD    +D+  +S +++  +        L L   M     +RPD   L
Sbjct: 47  ARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVL 106

Query: 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE 489
            S+ SA   L +L  G+ +HA+   +    ++++ ++LIDMY K G   +A +VF     
Sbjct: 107 ASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGV 166

Query: 490 KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541
           K    W ALI G+A NG   ++L++F  M   G+        G + A  + G
Sbjct: 167 KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTG 218



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 42/248 (16%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASA 142
           +  +F  + +   F +  ++  +++      A+ L+  M  +++ + D +    +   +A
Sbjct: 188 ALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAA 247

Query: 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNS 202
              ++  G+ +H  V++ GF S + V N L++MY+ C D+ +AR++F+   V D++SW +
Sbjct: 248 DLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTT 307

Query: 203 ILAGYVNADNVEEAKFIYNKM--------------------------PERNIIAS----- 231
           IL G       EE   +YN+M                            R +  S     
Sbjct: 308 ILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREY 367

Query: 232 ---------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEALVL 281
                       + L  R G ++EA +L   MP + D  +W AL+S  +++   +  L +
Sbjct: 368 GMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRV 427

Query: 282 FMNMIDHR 289
             N+++ R
Sbjct: 428 ADNLLELR 435


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 342/575 (59%), Gaps = 28/575 (4%)

Query: 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCY----EQNEMYEEALVLFMNMIDH 288
           S ++    K N+  A ++F  +    +  ++ LIS       QN+++  A  L+  ++ +
Sbjct: 185 SHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHL-AFSLYNKILTN 243

Query: 289 RVMVDEVVVVSVL--SACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIHMYSSCGEI 345
           + +         L  + C+N +    G  +H   +K     + N +Q +L++ Y+  G++
Sbjct: 244 KNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKM 303

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             +  +FD  +  DL +WN +++ Y +  S       FD                    D
Sbjct: 304 CVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDA------------------D 345

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E+L LF +MQ  GIRP+E T+V++ISAC++L A+ QG W+H ++ +N +K+N  +GT
Sbjct: 346 FSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGT 405

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSS--WNALIIGFAMNGLADKSLEMFSEMKKSGV 523
             +DMY K GC++ A +VF    E    S  + A+I GFA++G  +++LE++ +MK  G+
Sbjct: 406 AFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGL 465

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+  TFV  + AC H+GLV+EG   F SM + H +EP  +HYGC++DLLGRAG LKEAE
Sbjct: 466 VPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAE 525

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           E +  MPM P+   W +LLGA + HG+  +GE    KL+EL+P+  G +VLLSN++AS G
Sbjct: 526 EWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVG 585

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
           R +DV  VR +M   GV K+PG S++E  G +HEFL GDR+HP   EI   + E+  +L+
Sbjct: 586 RVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLE 645

Query: 704 LEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHT 763
             G+   T E  FD+++E+KE  L  HSE+LAIAF LI       IRI+KNLR+C DCH 
Sbjct: 646 EYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHA 705

Query: 764 AAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             K IS A+ REI+VRDR+RFHHFK GSCSC+D+W
Sbjct: 706 FTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 250/568 (44%), Gaps = 92/568 (16%)

Query: 15  KSSVNAK--PIFKPT---INLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI 69
           KSS N+      KP     N   L+T  QKC +F    QI +Q+I TGL   T+  S LI
Sbjct: 129 KSSSNSNFLDFMKPKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLI 188

Query: 70  KFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQ---AICLY-KLMLNN 125
           K S+       + Y+FKIF ++ +P  F++NT++ + I +    Q   A  LY K++ N 
Sbjct: 189 KISSKF----NLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNK 244

Query: 126 NVGVDNYTYPLLAQASALRLSVFE-GKLIHDHVLK---AGFDSDVYVNNTLINMYAVCGD 181
           N+  +++T+P L +A     S F  G L+H HVLK     FD+  +V  +L+N YA  G 
Sbjct: 245 NLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGK 302

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYV-------------NADNVEEAKFIYNKM----- 223
           +  +R +FD     DL +WN IL  Y              +AD   E+ +++  M     
Sbjct: 303 MCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGI 362

Query: 224 -PE----------------------------RNIIASN-----SMIVLFGRKGNVAEACR 249
            P                             RN I  N     + + ++ + G +  AC+
Sbjct: 363 RPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQ 422

Query: 250 LFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
           +F +MP+  +D   ++A+I  +  +    +AL L+  M    ++ D    V  + AC+++
Sbjct: 423 VFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHV 482

Query: 308 TVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEK-LFDAGHNLDLISWNS 365
            +V+ G  +     ++ G+E  +     LI +    G +  AE+ L D     + + W S
Sbjct: 483 GLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRS 542

Query: 366 M-----ISGYLKCGSVEKARAL-FDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +     I G L  G V   + +  +     + V  S M   YA   + ++   +   M+H
Sbjct: 543 LLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNM---YASVGRVNDVKRVRKLMKH 599

Query: 420 HGIRPDEA-TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
           HG+      +LV +  A    +  D+    H + ++  LKI  I   + ++ Y       
Sbjct: 600 HGVNKLPGFSLVEIKGAMHEFLTGDRS---HPFSKEIYLKIAEI--NSRLEEYGHKARTS 654

Query: 479 NALEVFHGTEEKGVSSWNA--LIIGFAM 504
            AL      +++GV S+++  L I FA+
Sbjct: 655 EALFDLEEEDKEGVLSYHSERLAIAFAL 682


>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
 gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
          Length = 664

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/483 (42%), Positives = 305/483 (63%), Gaps = 9/483 (1%)

Query: 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNL-DL 360
           SAC+ L     G+ VHALAVK G    + ++NAL+H Y   G++    ++FD    + D+
Sbjct: 159 SACSFL-----GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
           ++WN +++GY++ G +  AR +FD M  +D +SWST++ GY + ++    L +F  M   
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
           G+RP++A +V+ +SA   L  L+ GK++H  ++++G+ +   +G  L+DMY K GCV  A
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
            EVF G   + V +WNA+I G A +GL   ++E+F      G++P  +TFVGVL  C   
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
           GLV EG R+F  +++++R+EP  +HYGCMVDLLGRAG++ EA ELIE M ++PD   WG 
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           +L +CK HG  ++G  VG KL+EL P H G++VLLS I+A   +WD+V EVR +M  RG 
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQ 720
            K  G S++EA+G +H+FL GD  H    +I + LD + K+L   GY PD   V  DI +
Sbjct: 514 NKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGE 573

Query: 721 EEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRD 780
           EEK   +  HSE+LAIA+G I +   +PIRI+KNLR+C DCH   +FI+   D    V+ 
Sbjct: 574 EEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCH---EFIAGNADELTGVKQ 630

Query: 781 RHR 783
             R
Sbjct: 631 VQR 633



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/582 (23%), Positives = 235/582 (40%), Gaps = 131/582 (22%)

Query: 32  ILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLP-------------F 78
           +L   L    + +Q  Q  +++ + GL A + A   L+     LLP              
Sbjct: 34  LLAALLPPSPTVRQVQQAHARLAVLGLAA-SRAMPHLLAVLPRLLPDKPRHRGDDGGGDG 92

Query: 79  IEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--------VGVD 130
              +Y   +F    S + F  N ++R  +   +P   + L+      N          + 
Sbjct: 93  DHYAYPLALFRRANSTSAFASNNLLRV-LPHPLP---LTLFSRFRRRNPHSFTFLLASIS 148

Query: 131 NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD 190
           N+       ASA     F G  +H   +KAG   D++V N L++ Y V GD+ A R++FD
Sbjct: 149 NHLNAAGPSASACS---FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFD 205

Query: 191 ESP-VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACR 249
           E P V D+++WN +LAGYV                               R G +  A  
Sbjct: 206 ELPRVRDVLTWNEVLAGYV-------------------------------RAGMMTVARE 234

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           +F EMP +D +SWS L+  Y + E  E AL +F NM++  V  ++  VV+ LSA A L +
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
           ++ G  VH +  + G+   +N+  AL+ MY+ CG +  A ++FD     D+ +WN+M   
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAM--- 351

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
                                       I G A H    + + LF      G+ P   T 
Sbjct: 352 ----------------------------ICGLAAHGLGRDAVELFERFISEGLSPTNVTF 383

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           V V++ C+    + +G ++    + K  ++        ++D+  + G V  A+E+  G  
Sbjct: 384 VGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMH 443

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
                                             + P+ + +  +L +C+  GLVD G  
Sbjct: 444 ----------------------------------IAPDPVLWGTILSSCKTHGLVDLGVS 469

Query: 549 HFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589
             N +I+   L+P +S +Y  +  +  +A    E  E+ + M
Sbjct: 470 VGNKLIE---LDPTHSGYYVLLSGIYAKANKWDEVREVRKLM 508


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 319/524 (60%), Gaps = 33/524 (6%)

Query: 262 WSALISCYEQNEMYEEALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           W+ LI  Y +      A  L+  M +   V  D      ++ A   +  V+ G ++H++ 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           ++ G    I +QN+L+H+Y++C                               G V  A 
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANC-------------------------------GDVASAY 176

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
            +FD M EKD+V+W+++I+G+A++ +  E L+L+ EM   GI+PD  T+VS++SAC  + 
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL  GK +H Y+ K GL  N      L+D+Y + G V+ A  +F    +K   SW +LI+
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296

Query: 501 GFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
           G A+NG   +++E+F  M+ + G+ P EITFVG+L AC H G+V EG  +F  M +E+++
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           EP  +H+GCMVDLL RAG +K+A E I+SMPM P+V  W  LLGAC  HGD ++ E    
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARI 416

Query: 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFL 679
           ++++L+P+H G +VLLSN++AS+ RW DV ++R  M+R GV K+PG S++E    +HEFL
Sbjct: 417 QILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476

Query: 680 AGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFG 739
            GD++HPQ + I   L EM  +L+ EGY P    V  D+++EEKE  +  HSEK+AIAF 
Sbjct: 477 MGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFM 536

Query: 740 LITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           LI+    +PI ++KNLR+C DCH A K +S+ ++REIVVRDR R
Sbjct: 537 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 208/449 (46%), Gaps = 83/449 (18%)

Query: 22  PIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL-IADTFAASRLIKFSTDLLPFIE 80
           P+ +  INL  L+T+     S  +  QI +  I  G+ I+D      LI +   L     
Sbjct: 13  PMVEKCINL--LQTY--GVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPP 68

Query: 81  MSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLA 138
           MSY+ K+F+ +E P N FI+NT++R Y +      A  LY+ M ++  V  D +TYP L 
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
           +A      V  G+ IH  V+++GF S +YV N+L+++YA CGD+++A K+FD+ P  DLV
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 199 SWNSILAGYVNADNVEEAKFIYNKM------PE--------------------------- 225
           +WNS++ G+      EEA  +Y +M      P+                           
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 226 ------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                 RN+ +SN ++ L+ R G V EA  LF EM  K+ VSW++LI     N   +EA+
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 280 VLFMNMIDHRVMVD-EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHM 338
            LF  M     ++  E+  V +L AC+           H   VK G E +  ++      
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACS-----------HCGMVKEGFEYFRRMRE----- 352

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTM 397
                E     ++   G  +DL++         + G V+KA     +M ++ +VV W T+
Sbjct: 353 -----EYKIEPRIEHFGCMVDLLA---------RAGQVKKAYEYIKSMPMQPNVVIWRTL 398

Query: 398 ISGYAQHD-----QFSETLSLFMEMQHHG 421
           +     H      +F+    L +E  H G
Sbjct: 399 LGACTVHGDSDLAEFARIQILQLEPNHSG 427



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 385 AMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVA 441
           + IEK  +V  W+T+I GYA+        SL+ EM+  G + PD  T   +I A T +  
Sbjct: 77  SKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMAD 136

Query: 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501
           +  G+ IH+ + ++G      +  +L+ +Y   G V +A +VF    EK + +WN++I G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

Query: 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561
           FA NG  +++L +++EM   G+ P+  T V +L AC  +G +  G R    MI+   L  
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG-LTR 255

Query: 562 NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           N      ++DL  R G ++EA+ L + M +  +  +W +L+
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 351/605 (58%), Gaps = 37/605 (6%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIA----SNSMIVLFGRKGNVAEACRLFKEMP 255
           +N++L   +    + E + ++  M + + +        +IV + +  ++ +A  +F  MP
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           ++++VSW+A+IS Y Q     +AL LF+ M+      +E    +VL++C   +    G  
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +H+  +K+  E ++ + ++L+ MY+                               K G 
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYA-------------------------------KDGK 209

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           + +AR +F  + E+DVVS + +ISGYAQ     E L LF  +Q  G++ +  T  SV++A
Sbjct: 210 IHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTA 269

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
            + L ALD GK +H ++ ++ +    +L  +LIDMY K G +  A  +F    E+ V SW
Sbjct: 270 LSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISW 329

Query: 496 NALIIGFAMNGLADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554
           NA+++G++ +G   + LE+F+ M  ++ V P+ +T + VL  C H GL D+G   F  M 
Sbjct: 330 NAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMT 389

Query: 555 QEH-RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEM 613
                ++P+SKHYGC+VD+LGRAG ++ A E ++ MP  P  A WG LLGAC  H + ++
Sbjct: 390 SGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDI 449

Query: 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673
           GE VG +L++++P++ G +V+LSN++AS GRW+DV  +R +M+++ V K PG S IE + 
Sbjct: 450 GEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQ 509

Query: 674 IIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEK 733
           ++H F A D +HP+  E+   + E++ + K  GY PD   V  D+D+E+KE  L  HSEK
Sbjct: 510 VLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEK 569

Query: 734 LAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793
           LA+ FGLI      PIR++KNLRIC DCH  AK+ S+ + RE+ +RD++RFH    G CS
Sbjct: 570 LALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCS 629

Query: 794 CMDFW 798
           C D+W
Sbjct: 630 CGDYW 634



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 46/321 (14%)

Query: 29  NLSILETHLQKC---QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF 85
           N     T L +C   ++ ++  ++ + MI T  +   +  +RLI F        +  +  
Sbjct: 57  NFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARH-- 114

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
            +F  +   N   +  M+ AY QR    QA+ L+  ML +    + +T+  +  +     
Sbjct: 115 -VFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSS 173

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
               G+ IH H++K  +++ VYV ++L++MYA  G +  AR +F   P  D+VS  +I++
Sbjct: 174 GFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIIS 233

Query: 206 GYVNADNVEEAKFIYNKMPERN-------------------------------------- 227
           GY      EEA  ++ ++                                          
Sbjct: 234 GYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPS 293

Query: 228 -IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
            ++  NS+I ++ + GN+  A R+F  + ++ ++SW+A++  Y ++    E L LF  MI
Sbjct: 294 YVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMI 353

Query: 287 D-HRVMVDEVVVVSVLSACAN 306
           D ++V  D V V++VLS C++
Sbjct: 354 DENKVKPDSVTVLAVLSGCSH 374



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 36/211 (17%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  L   +      ++  Y Q  + ++A+ L++ +    +  +  TY  +  A +   +
Sbjct: 216 IFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAA 275

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H+H+L++   S V + N+LI+MY+ CG+L+ AR+                   
Sbjct: 276 LDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARR------------------- 316

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEM-----PKKDLVS 261
                       I++ + ER +I+ N+M+V + + G   E   LF  M      K D V+
Sbjct: 317 ------------IFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVT 364

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMV 292
             A++S      + ++ + +F +M   ++ V
Sbjct: 365 VLAVLSGCSHGGLEDKGMDIFYDMTSGKISV 395


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/692 (33%), Positives = 359/692 (51%), Gaps = 81/692 (11%)

Query: 153 IHDHVLKAGFDSDVY--VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           +H   +K GFD++ +  V+N L+  Y     L  A  LF+E P  D V++N+++ GY   
Sbjct: 169 VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKD 228

Query: 211 DNVEEAKFIYNKMPE---------------------------------------RNIIAS 231
               E+  ++ KM +                                       R+    
Sbjct: 229 GLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVG 288

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM----ID 287
           N ++  + +   V E   LF EMP+ D VS++ +IS Y Q + YE +L  F  M     D
Sbjct: 289 NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFD 348

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
            R         ++LS  ANL+ ++ G  +H  A+                       + T
Sbjct: 349 RR----NFPFATMLSIAANLSSLQMGRQLHCQAL-----------------------LAT 381

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A+ +   G        NS++  Y KC   E+A  +F ++ ++  VSW+ +ISGY Q    
Sbjct: 382 ADSILHVG--------NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
              L LF +M+   +R D++T  +V+ A     +L  GK +HA+I ++G   N   G+ L
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           +DMY K G + +A++VF    ++   SWNALI   A NG  + ++  F++M +SG+ P+ 
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
           ++ +GVL AC H G V++G  +F +M   + + P  KHY CM+DLLGR G   EAE+L++
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD-GFHVLLSNIHASKGRWD 646
            MP  PD   W ++L AC+ H +  + ER   KL  ++   D   +V +SNI+A+ G W+
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V +V+  M  RG+ K+P  S +E N  IH F + D+THP  +EI   ++E+  +++ EG
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREG 733

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y PDT  V  D+D++ K  +L  HSE+LA+AF LI+     PI +MKNLR C DCH A K
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            IS+   REI VRD  RFHHF  G CSC D+W
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 141/585 (24%), Positives = 246/585 (42%), Gaps = 111/585 (18%)

Query: 120 KLMLNNNVGVDNYTYPLLAQASALRLSVF-EGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           KL  N+N  V + T   L Q      + F + + +   ++K GFD+D   +N ++     
Sbjct: 2   KLYCNSN-EVRSRTLATLRQLRQPSPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLR 60

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238
            G +SAARK++DE P  + VS N++++G+V   +V  A+ +++ MP+R ++    ++  +
Sbjct: 61  RGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWY 120

Query: 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298
            R  +  EA +LF++M +          SC                      + D V   
Sbjct: 121 ARNSHFDEAFKLFRQMCRSS--------SC---------------------TLPDHVTFT 151

Query: 299 SVLSACANLTVVKAGTSVHALAVKIGIEC--YINLQNALIHMYSSCGEITTAEKLFDAGH 356
           ++L  C +     A   VHA AVK+G +   ++ + N L+  Y     +  A  LF+   
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 357 NLDLISWNSMISGYLKCGSVEKARALFDAM------------------------------ 386
             D +++N++I+GY K G   ++  LF  M                              
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271

Query: 387 ---------IEKDVVSWSTMISGYAQHDQFSET--------------------------- 410
                      +D    + ++  Y++HD+  ET                           
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 411 ----LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL--G 464
               L  F EMQ  G         +++S   +L +L  G+ +H   +      +SIL  G
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHC--QALLATADSILHVG 389

Query: 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT 524
            +L+DMY K    + A  +F    ++   SW ALI G+   GL    L++F++M+ S + 
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR 449

Query: 525 PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584
            ++ TF  VL A      +  G +    +I+   LE      G +VD+  + G +K+A +
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQ 508

Query: 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPD 627
           + E MP   +  +W AL+ A   +GD E       K++E  LQPD
Sbjct: 509 VFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPD 552



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 184/424 (43%), Gaps = 54/424 (12%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-FNTMMRAY 106
           Q+ +  + TG   D    ++++ F +     +E    F     L+    F+ +N ++ +Y
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELD----FVSYNVVISSY 326

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS-ALRLSVFE-GKLIHDHVLKAGFDS 164
            Q +  + ++  ++ M    +G D   +P     S A  LS  + G+ +H   L A  DS
Sbjct: 327 SQADQYEASLHFFREM--QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADS 384

Query: 165 DVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVN--------------- 209
            ++V N+L++MYA C     A  +F   P    VSW ++++GYV                
Sbjct: 385 ILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444

Query: 210 -----ADNVEEAK-------------------FIYNKMPERNIIASNSMIVLFGRKGNVA 245
                AD    A                    FI       N+ + + ++ ++ + G++ 
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504

Query: 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305
           +A ++F+EMP ++ VSW+ALIS +  N   E A+  F  MI+  +  D V ++ VL+AC+
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564

Query: 306 NLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISW 363
           +   V+ GT    A++   GI         ++ +    G    AEKL D      D I W
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMW 624

Query: 364 NSMISGYL----KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           +S+++       +  +   A  LF     +D  ++ +M + YA   ++ +   +   M+ 
Sbjct: 625 SSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRE 684

Query: 420 HGIR 423
            GI+
Sbjct: 685 RGIK 688



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 63/371 (16%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           IF  L       +  ++  Y+Q+ +    + L+  M  +N+  D  T+  + +ASA   S
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  GK +H  ++++G   +V+  + L++MYA CG +  A ++F+E P  + VSWN++++ 
Sbjct: 468 LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISA 527

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN----SMIVLFGRKGNVAEACRLFKEM-------P 255
           + +  + E A   + KM E  +   +     ++      G V +    F+ M       P
Sbjct: 528 HADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITP 587

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           KK    ++ ++    +N  + EA  L   M +     DE++  SVL+AC           
Sbjct: 588 KKK--HYACMLDLLGRNGRFAEAEKL---MDEMPFEPDEIMWSSVLNACR---------- 632

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
                               IH   S  E   AEKLF      D  ++ SM + Y   G 
Sbjct: 633 --------------------IHKNQSLAE-RAAEKLFSMEKLRDAAAYVSMSNIYAAAGE 671

Query: 376 VEKARALFDAMIEKDV-----VSWSTM---ISGYAQHDQ--------FSETLSLFMEMQH 419
            EK R +  AM E+ +      SW  +   I  ++ +DQ          +   L  E++ 
Sbjct: 672 WEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIER 731

Query: 420 HGIRPDEATLV 430
            G +PD +++V
Sbjct: 732 EGYKPDTSSVV 742


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 342/593 (57%), Gaps = 32/593 (5%)

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y    +   A  +Y +M ++N ++SN +I  + R G++  A ++F EMP + L +W+A+I
Sbjct: 4   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 63

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           +   Q E  EE L LF  M       DE  + SV S  A L  V  G  +H   +K G+E
Sbjct: 64  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 123

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + ++L HMY                               ++ G ++    +  +M
Sbjct: 124 LDLVVNSSLAHMY-------------------------------MRNGKLQDGEIVIRSM 152

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +++V+W+T+I G AQ+      L L+  M+  G RP++ T V+V+S+C+ L    QG+
Sbjct: 153 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 212

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA   K G      + ++LI MY K GC+ +A + F   E++    W+++I  +  +G
Sbjct: 213 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 272

Query: 507 LADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
             D+++E+F+ M +++ +  NE+ F+ +L AC H GL D+G   F+ M++++  +P  KH
Sbjct: 273 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 332

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y C+VDLLGRAG L +AE +I SMP+  D+  W  LL AC  H + EM +RV ++++++ 
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 392

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+    +VLL+N+HAS  RW DV EVR  M  + V K  G S  E  G +H+F  GDR+ 
Sbjct: 393 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 452

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
            +  EI + L E+  ++KL+GY PDT  V  D+D+EEKE+ L +HSEKLA+AF L+ +  
Sbjct: 453 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 512

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIRI+KNLR+C+DCH A K+IS   +REI +RD  RFHHF +G CSC D+W
Sbjct: 513 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 119/211 (56%)

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS  G+  +A  ++      + +S N +I+GY++ G +  AR +FD M ++ + +W+ M
Sbjct: 3   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 62

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I+G  Q +   E LSLF EM   G  PDE TL SV S    L ++  G+ IH Y  K GL
Sbjct: 63  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGL 122

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +++ ++ ++L  MYM+ G + +   V      + + +WN LI+G A NG  +  L ++  
Sbjct: 123 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKM 182

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           MK SG  PN+ITFV VL +C  + +  +G +
Sbjct: 183 MKISGCRPNKITFVTVLSSCSDLAIRGQGQQ 213



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 176/400 (44%), Gaps = 73/400 (18%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
           +N LIN Y   GDL  ARK+FDE P   L +WN+++AG +  +  EE   ++ +M     
Sbjct: 28  SNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGF 87

Query: 225 -----------------------------------ERNIIASNSMIVLFGRKGNVAEACR 249
                                              E +++ ++S+  ++ R G + +   
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEI 147

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           + + MP ++LV+W+ LI    QN   E  L L+  M       +++  V+VLS+C++L +
Sbjct: 148 VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 207

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +HA A+KIG    + + ++LI MYS CG +  A K F    + D + W+SMIS 
Sbjct: 208 RGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISA 267

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y   G  ++A  LF+ M E+                                +  +E   
Sbjct: 268 YGFHGQGDEAIELFNTMAEQT------------------------------NMEINEVAF 297

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           ++++ AC+H    D+G +     + K G K      T ++D+  + GC+D A  +     
Sbjct: 298 LNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 357

Query: 489 EK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
            K  +  W  L+    ++  A+ +  +F E+ +  + PN+
Sbjct: 358 IKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPND 395



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +N M+   IQ    ++ + L++ M       D YT   +   SA   
Sbjct: 46  KVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLR 105

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           SV  G+ IH + +K G + D+ VN++L +MY   G L     +    PV +LV+WN+++ 
Sbjct: 106 SVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIM 165

Query: 206 GYVNADNVEEAKFIY----------NKMPERNIIASNS---------------------- 233
           G       E   ++Y          NK+    +++S S                      
Sbjct: 166 GNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASS 225

Query: 234 -------MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                  +I ++ + G + +A + F E   +D V WS++IS Y  +   +EA+ LF  M 
Sbjct: 226 VVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA 285

Query: 287 DHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGE 344
           +   M ++EV  +++L AC++  +   G  +  + V K G +  +     ++ +    G 
Sbjct: 286 EQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 345

Query: 345 ITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AE +  +     D++ W +++S      + E A+ +F  +++ D
Sbjct: 346 LDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 392


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 334/568 (58%), Gaps = 32/568 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM-IDHRV 290
           + ++ ++ + G   +A RLF EMP KDLVSW++L+S           L  F  M  +   
Sbjct: 158 DRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGR 217

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             +EV ++SV+SACA++  +  G S+H + VK+G+     + N+LI+MY           
Sbjct: 218 QPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYG---------- 267

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                K G ++ A  LF+ M  + +VSW++M+  +  +    + 
Sbjct: 268 ---------------------KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKG 306

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + LF  M+  GI PD+AT+V+++ ACT      Q + IHAYI + G   + I+ T L+++
Sbjct: 307 MDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNL 366

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y KLG ++ + ++F   +++   +W A++ G+A++    +++++F  M K GV  + +TF
Sbjct: 367 YAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTF 426

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
             +L AC H GLV+EG ++F  M + +R+EP   HY CMVDLLGR+G L++A ELI+SMP
Sbjct: 427 THLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMP 486

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
           M P    WGALLGAC+ +G+ E+G+ V  +L+ L P     +++LSNI+++ G W D  +
Sbjct: 487 MEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASK 546

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR +M  R + + PGCS IE    IH F+ GD+ HP+ +EI   L+E+ +K++  G AP 
Sbjct: 547 VRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPK 606

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  DID+E K   + +HSEKLAIAFGL+      P+ I KNLRIC DCH+ AKF S 
Sbjct: 607 TEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASL 666

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R I++RD  RFHHF  G CSC D+W
Sbjct: 667 LEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 178/400 (44%), Gaps = 53/400 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSY---SFKIFAFLES 93
           +  C S    + I +++I +   +D F   RL+        + ++ Y   + ++F  + +
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSM------YFKLGYDEDAQRLFDEMPN 182

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
            +   +N++M     R      +  + ++   +    +  T   +  A A   ++ EGK 
Sbjct: 183 KDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKS 242

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           +H  V+K G      V N+LINMY   G L AA +LF+E PV  LVSWNS++  + +   
Sbjct: 243 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 302

Query: 213 VEEAKFIYNKM------PER---------------------------------NIIASNS 233
            E+   ++N M      P++                                 +II + +
Sbjct: 303 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATA 362

Query: 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD 293
           ++ L+ + G +  +  +F+E+  +D ++W+A+++ Y  +    EA+ LF  M+   V VD
Sbjct: 363 LLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVD 422

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLF 352
            V    +LSAC++  +V+ G     +  ++  +E  ++  + ++ +    G +  A +L 
Sbjct: 423 HVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELI 482

Query: 353 DAGHNLDLIS--WNSMISGYLKCGSVEKARALFDAMIEKD 390
            +   ++  S  W +++      G+VE  + + + ++  D
Sbjct: 483 KS-MPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 521


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/727 (34%), Positives = 387/727 (53%), Gaps = 43/727 (5%)

Query: 88  FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F  + +P  F  N M+ AY Q      A   +    N +V   N      A+  + R   
Sbjct: 15  FDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGMLSGYARYGSFR--- 71

Query: 148 FEGKLIHDHVLKAGFDSDVYVN----NTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
            + KL         FD   Y N    NTLI+ +A  G+L+ AR LF+   + D  +WN +
Sbjct: 72  -DAKLF--------FDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWNVL 122

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263
           +AGY        A+ I+++ P RN++  N+MI  + + G++  A  LF  MP+ + V W+
Sbjct: 123 IAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWN 182

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
           ALIS   +N    +AL LF  +       D V  ++++  C           VH+  +  
Sbjct: 183 ALISGMGRNRRLPDALELFQAL----PFRDMVSWIAMIQGC-----------VHSGDLHR 227

Query: 324 GIECY-------INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
             + +       + +  A++  ++  G +  A  LFDA    D  + N+MI+ Y   G +
Sbjct: 228 AWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEI 287

Query: 377 EKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
            +A+ LFD+  + +DV+SW+ +++ ++Q+    + L +F  M   GI PD  + VS + A
Sbjct: 288 ARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDA 347

Query: 436 CTHLVALDQGKWIHAYI---RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV 492
           CT L AL +GK +H  +    +  + + + L T L++ Y K G +D A  +F        
Sbjct: 348 CTILTALREGKLLHEELLLASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCDA 407

Query: 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552
              N+++  +A +G A ++ ++F     SG+ P+ +TFV ++ AC H GL+D GHR+F S
Sbjct: 408 ILLNSMLGAYAQSGRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLS 467

Query: 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
           ++ +  L P++ HY CMVDLL R G L + E+L+++MP  P+   W +LL  C+ HGD  
Sbjct: 468 LVGDFALAPHAAHYTCMVDLLARTGHLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGDVG 527

Query: 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEAN 672
            G R+ R+     P     +VLLS ++ + G+  D + VR  M  R + K  G S I   
Sbjct: 528 RGARLARRATNANPVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLSSITIK 587

Query: 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSE 732
           G  HEF+AG + HP+I+ I + L  +  K++  GY PDT  V  D D EEKE +L  HSE
Sbjct: 588 GRAHEFVAGGKNHPEISAILDELHSLNAKMREAGYVPDTSNVLHDFDDEEKEQSLSFHSE 647

Query: 733 KLAIAFGLI-TISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGS 791
           KLA+ FG+I T    +P+ ++KNLR+C DCHTA KF+SR   R I VRD HRFHHF+ G+
Sbjct: 648 KLAVVFGMISTRGRSDPLFVVKNLRMCTDCHTATKFMSRIAKRAITVRDAHRFHHFQDGA 707

Query: 792 CSCMDFW 798
           C+C DFW
Sbjct: 708 CACADFW 714



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 196/469 (41%), Gaps = 82/469 (17%)

Query: 175 MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSM 234
           MY  CG ++ A   FD        S N ++A Y     ++ A   +++ P +++++ N M
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGM 60

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           +  + R G+  +A   F EMP K+ VS++ LIS + +     EA  LF +M         
Sbjct: 61  LSGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSM--------- 111

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
                         +  A T                  N LI  Y+     T A ++FD 
Sbjct: 112 -------------KIRDAAT-----------------WNVLIAGYTQRCLCTHAREIFDR 141

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               ++++WN+MI GY + G ++ A  LF  M + + V W+ +ISG  ++ +  + L LF
Sbjct: 142 APVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWNALISGMGRNRRLPDALELF 201

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
             +       D  + +++I  C H   L +  W    + K     + ++ T ++  +   
Sbjct: 202 QALPFR----DMVSWIAMIQGCVHSGDLHRA-WD---LFKRMPLTDVVIWTAIVTAFAHS 253

Query: 475 GCVDNALEVF--------------------HGT------------EEKGVSSWNALIIGF 502
           G +  A ++F                    HG             + + V SWNAL+  F
Sbjct: 254 GFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAF 313

Query: 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-- 560
           + NG A ++L +F+ M   G+ P+ I+FV  L AC  +  + EG      ++   + E  
Sbjct: 314 SQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIF 373

Query: 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             +     +V+   + G L EA  L ++M    D     ++LGA  + G
Sbjct: 374 VEASLATALVNFYAKCGRLDEARSLFDAMAFC-DAILLNSMLGAYAQSG 421



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 113/273 (41%), Gaps = 49/273 (17%)

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MY  CG +  A   FD+  N    S N M++ Y + G ++ A   FD    KDVVSW+ M
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGM 60

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           +SGYA++  F +    F EM +                                  KN +
Sbjct: 61  LSGYARYGSFRDAKLFFDEMPY----------------------------------KNTV 86

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
             N     TLI  + + G +  A  +F+  + +  ++WN LI G+    L   + E+F  
Sbjct: 87  SYN-----TLISAFARQGNLAEARNLFNSMKIRDAATWNVLIAGYTQRCLCTHAREIFDR 141

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577
                   N +T+  ++G     G +D     F  M Q      N   +  ++  +GR  
Sbjct: 142 AP----VRNVVTWNTMIGGYAQAGHLDNATELFGLMPQW-----NEVCWNALISGMGRNR 192

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
            L +A EL +++P   D+ +W A++  C   GD
Sbjct: 193 RLPDALELFQALPFR-DMVSWIAMIQGCVHSGD 224


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/749 (33%), Positives = 396/749 (52%), Gaps = 81/749 (10%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++ MM  Y        AI ++   L   +  ++Y Y  + +A +    V  G++    ++
Sbjct: 134 WSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLM 193

Query: 159 KAG-FDSDVYVNNTLINMYAVCGDLS--AARKLFDESPVLDLVSW--------------- 200
           K G F+SDV V  +LI+M+ V G+ S   A K+FD+   L++V+W               
Sbjct: 194 KTGHFESDVCVGCSLIDMF-VKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPRE 252

Query: 201 --------------------NSILAGYVNADNVEEAKFIYNKMPERNII--ASNSMIVLF 238
                               +S+ +     +N+   K +++      ++     S++ ++
Sbjct: 253 AIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMY 312

Query: 239 GR---KGNVAEACRLFKEMPKKDLVSWSALISCYEQN-EMYEEALVLFMNMIDH-RVMVD 293
            +    G+V +  ++F  M    ++SW+ALI+ Y +N  +  EA+ LF  MI    V  +
Sbjct: 313 AKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPN 372

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
                S   AC NL+  + G  V   A K G+    ++ N++I M+              
Sbjct: 373 HFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF-------------- 418

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                            +K   +E A+  F+++ EK++VS++T + G  ++  F +   L
Sbjct: 419 -----------------VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
             E+    +     T  S++S   ++ ++ +G+ IH+ + K GL  N  +   LI MY K
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533
            G +D A  VF+  E + V SW ++I GFA +G A + LE F++M + GV PNE+T+V +
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAI 581

Query: 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593
           L AC H+GLV EG RHFNSM ++H+++P  +HY CMVDLL RAG+L +A E I +MP   
Sbjct: 582 LSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQA 641

Query: 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653
           DV  W   LGAC+ H + E+G+   RK++EL P+    ++ LSNI+A  G+W++  E+R 
Sbjct: 642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRR 701

Query: 654 MMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713
            M  R +VK  GCS IE    IH+F  GD  HP  ++I + LD +  ++K  GY PDT  
Sbjct: 702 KMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDL 761

Query: 714 VAFDIDQEEKETT----LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFIS 769
           V   +++E  E      L++HSEK+A+AFGLI+ S   P+R+ KNLR+C DCH A K+IS
Sbjct: 762 VLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYIS 821

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               REIV+RD +RFHHFK G CSC D+W
Sbjct: 822 TVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 217/461 (47%), Gaps = 55/461 (11%)

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESP-----VLDLVSWNSILAGYVNADNVEEAKFIY 220
           + V + LI  +   GDL  A    D         +D V+++S+L   + A +    K ++
Sbjct: 26  INVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVH 85

Query: 221 NKMPERNI----IASNSMIVLFGRKGNVAEACRLFKEMP---KKDLVSWSALISCYEQNE 273
            ++ E +I    +  NS+I L+ + G+ A+A  +F+ M    K+D+VSWSA+++CY  N 
Sbjct: 86  ARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNG 145

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQ 332
              +A+ +F+  ++  ++ ++    +V+ AC+N   V  G       +K G  E  + + 
Sbjct: 146 RELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVG 205

Query: 333 NALIHMYSSCGE--ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
            +LI M+   GE     A K+FD    L++++W  MI+   +C                 
Sbjct: 206 CSLIDMFVK-GENSFENAYKVFDKMSELNVVTWTLMIT---RC----------------- 244

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450
                 M  G+ +     E +  F++M   G   D+ TL SV SAC  L  L  GK +H+
Sbjct: 245 ------MQMGFPR-----EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 451 YIRKNGLKINSILGTTLIDMYMKL---GCVDNALEVFHGTEEKGVSSWNALIIGFAMN-G 506
           +  ++GL  +  +  +L+DMY K    G VD+  +VF   E+  V SW ALI G+  N  
Sbjct: 294 WAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351

Query: 507 LADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
           LA +++ +FSEM   G V PN  TF     AC ++     G +      +   L  NS  
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRG-LASNSSV 410

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
              ++ +  ++  +++A+   ES+     V+    L G C+
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/530 (22%), Positives = 238/530 (44%), Gaps = 84/530 (15%)

Query: 129 VDNYTYPLLAQASALRLSVFE-GKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARK 187
           +D+ T+  L + S +R   F  GKL+H  +++   + D  + N+LI++Y+  GD + A  
Sbjct: 60  MDSVTFSSLLK-SCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118

Query: 188 LFDESPVL---DLVSWNSILAGYVNADNVEEAKFIYNKMPERNII------------ASN 232
           +F+        D+VSW++++A Y N     +A  ++ +  E  ++             SN
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSN 178

Query: 233 SMIVLFGR------------KGNVAEAC-----------------RLFKEMPKKDLVSWS 263
           S  V  GR            + +V   C                 ++F +M + ++V+W+
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWT 238

Query: 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323
            +I+   Q     EA+  F++M+      D+  + SV SACA L  +  G  +H+ A++ 
Sbjct: 239 LMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298

Query: 324 GIECYINLQNALIHMYSSC---GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
           G+    +++ +L+ MY+ C   G +    K+FD   +  ++SW ++I+GY+K  ++    
Sbjct: 299 GL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA--- 353

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACTHL 439
                                      +E ++LF EM   G + P+  T  S   AC +L
Sbjct: 354 ---------------------------TEAINLFSEMITQGHVEPNHFTFSSAFKACGNL 386

Query: 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALI 499
                GK +     K GL  NS +  ++I M++K   +++A   F    EK + S+N  +
Sbjct: 387 SDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFL 446

Query: 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            G   N   +++ ++ SE+ +  +  +  TF  +L    ++G + +G +  +S + +  L
Sbjct: 447 DGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ-IHSQVVKLGL 505

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             N      ++ +  + G +  A  +   M  + +V +W +++    KHG
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHG 554



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 7/211 (3%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+L Q    GL +++  A+ +I      +    M  + + F  L   N   +NT +    
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISM---FVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTC 450

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +    +QA  L   +    +GV  +T+  L    A   S+ +G+ IH  V+K G   +  
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER- 226
           V N LI+MY+ CG +  A ++F+     +++SW S++ G+            +N+M E  
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEG 570

Query: 227 ---NIIASNSMIVLFGRKGNVAEACRLFKEM 254
              N +   +++      G V+E  R F  M
Sbjct: 571 VKPNEVTYVAILSACSHVGLVSEGWRHFNSM 601


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 337/556 (60%), Gaps = 35/556 (6%)

Query: 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN 306
           A R+F+     ++  ++ALI  +  +  Y +A+ L+  M+   ++ D  ++ S+L AC +
Sbjct: 83  ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGS 142

Query: 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
              ++ G  VH+ A+K+G+       N L+ +                           +
Sbjct: 143 QLALREGREVHSRALKLGLS-----SNRLVRL--------------------------RI 171

Query: 367 ISGYLKCGSVEKARALFDAMIE----KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422
           +  Y KCG +  AR +F+ M E    KD V W+ MI G+ ++++ +  L  F  MQ   +
Sbjct: 172 MELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV 231

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RP+E T+V V+SAC+ L AL+ G+W+H+Y+RK  +++N  +G  LI+MY + G +D A  
Sbjct: 232 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 291

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL 542
           VF   +++ V ++N +I G +MNG + +++E+F  M    + P  +TFVGVL AC H GL
Sbjct: 292 VFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGL 351

Query: 543 VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602
           VD G + F+SM +++ +EP  +HYGCMVDLLGR G L+EA +LI +M M+PD    G LL
Sbjct: 352 VDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 411

Query: 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662
            ACK H + E+GE+V + L +      G +VLLS+++AS G+W +  +VR  M   G+ K
Sbjct: 412 SACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 471

Query: 663 IPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE 722
            PGCS IE N  IHEFL GD  HP+   I   L+E+ + L+LEGY P+   V  DI+  E
Sbjct: 472 EPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGE 531

Query: 723 KETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRH 782
           KE  L  HSE+LAI +GLI+  P   IR+MKNLR+C DCH+A K I++   R++VVRDR+
Sbjct: 532 KEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRN 591

Query: 783 RFHHFKHGSCSCMDFW 798
           RFH+F++G+CSC D+W
Sbjct: 592 RFHYFENGACSCGDYW 607



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 180/397 (45%), Gaps = 49/397 (12%)

Query: 1   MTLATKLAHLSSTIKS--SVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGL 58
           MT A  L     + K   + N+ P    +++   + + LQ+ +   Q   I +Q+I  G 
Sbjct: 1   MTFAASLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGH 60

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
             D F    L++  +       + Y+ +IF +  +PN +++  ++  ++       AI L
Sbjct: 61  SQDPFMVFELLRSCSKCHA---IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQL 117

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           Y  ML++++  DNY    + +A   +L++ EG+ +H   LK G  S+  V   ++ +Y  
Sbjct: 118 YSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGK 177

Query: 179 CGDLSAARKLFDESP----VLDLVSWNSILAGYVNADNVEEA------------------ 216
           CG+L  AR++F+E P      D V W +++ G+V  + +  A                  
Sbjct: 178 CGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFT 237

Query: 217 -----------------KFIYNKMP----ERNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
                            +++++ M     E N+   N++I ++ R G++ EA  +F EM 
Sbjct: 238 IVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK 297

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            +D+++++ +IS    N    +A+ LF  MI  R+    V  V VL+AC++  +V  G  
Sbjct: 298 DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFK 357

Query: 316 V-HALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           + H++    G+E  I     ++ +    G +  A  L
Sbjct: 358 IFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDL 394



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 169/375 (45%), Gaps = 75/375 (20%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
           IH  +++ G   D ++   L+   + C  +  A ++F  +   ++  + +++ G+V++ N
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 213 VEEAKFIYNKMPERNIIASNSMIV------------------------------------ 236
             +A  +Y++M   +I+  N ++                                     
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 237 ---LFGRKGNVAEACRLFKEMPK----KDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
              L+G+ G + +A R+F+EMP+    KD V W+A+I  + +NE    AL  F  M    
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
           V  +E  +V VLSAC+ L  ++ G  VH+   K  IE  + + NALI+MYS CG I  A+
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD   + D+I++N+MISG    G   +A  LF  MI +                    
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRR------------------- 331

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLI 468
                       +RP   T V V++AC+H   +D G K  H+  R  G++        ++
Sbjct: 332 ------------LRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 379

Query: 469 DMYMKLGCVDNALEV 483
           D+  ++G ++ A ++
Sbjct: 380 DLLGRVGRLEEAYDL 394



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 8/288 (2%)

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           +L   GH+ D      ++    KC +++ A  +F      +V  ++ +I G+     + +
Sbjct: 54  QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFD 113

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            + L+  M H  I PD   + S++ AC   +AL +G+ +H+   K GL  N ++   +++
Sbjct: 114 AIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIME 173

Query: 470 MYMKLGCVDNALEVFHGTEE----KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           +Y K G + +A  VF    E    K    W A+I GF  N   +++LE F  M+   V P
Sbjct: 174 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 233

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           NE T V VL AC  +G ++ G R  +S +++  +E N      ++++  R G + EA+ +
Sbjct: 234 NEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 292

Query: 586 IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLV--ELQPDHDGF 631
            + M    DV T+  ++     +G       + R ++   L+P +  F
Sbjct: 293 FDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTF 339



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484
           D+  ++S++    H+   +Q   IHA + +NG   +  +   L+    K   +D A  +F
Sbjct: 31  DQKQIISLLQRSKHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 87

Query: 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544
             T    V  + ALI GF  +G    +++++S M    + P+      +L AC     + 
Sbjct: 88  QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 147

Query: 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP---MSPDVATWGAL 601
           EG R  +S   +  L  N      +++L G+ G L +A  + E MP   ++ D   W A+
Sbjct: 148 EG-REVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 206

Query: 602 L 602
           +
Sbjct: 207 I 207


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 342/593 (57%), Gaps = 32/593 (5%)

Query: 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
           Y    +   A  +Y +M ++N ++SN +I  + R G++  A ++F EMP + L +W+A+I
Sbjct: 2   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 61

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           +   Q E  EE L LF  M       DE  + SV S  A L  V  G  +H   +K G+E
Sbjct: 62  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 121

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + ++L HMY                               ++ G ++    +  +M
Sbjct: 122 LDLVVNSSLAHMY-------------------------------MRNGKLQDGEIVIRSM 150

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             +++V+W+T+I G AQ+      L L+  M+  G RP++ T V+V+S+C+ L    QG+
Sbjct: 151 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 210

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            IHA   K G      + ++LI MY K GC+ +A + F   E++    W+++I  +  +G
Sbjct: 211 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 270

Query: 507 LADKSLEMFSEM-KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH 565
             D+++E+F+ M +++ +  NE+ F+ +L AC H GL D+G   F+ M++++  +P  KH
Sbjct: 271 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 330

Query: 566 YGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQ 625
           Y C+VDLLGRAG L +AE +I SMP+  D+  W  LL AC  H + EM +RV ++++++ 
Sbjct: 331 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 390

Query: 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685
           P+    +VLL+N+HAS  RW DV EVR  M  + V K  G S  E  G +H+F  GDR+ 
Sbjct: 391 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQ 450

Query: 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISP 745
            +  EI + L E+  ++KL+GY PDT  V  D+D+EEKE+ L +HSEKLA+AF L+ +  
Sbjct: 451 SKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPE 510

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             PIRI+KNLR+C+DCH A K+IS   +REI +RD  RFHHF +G CSC D+W
Sbjct: 511 GAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 119/211 (56%)

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
           MYS  G+  +A  ++      + +S N +I+GY++ G +  AR +FD M ++ + +W+ M
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL 457
           I+G  Q +   E LSLF EM   G  PDE TL SV S    L ++  G+ IH Y  K GL
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGL 120

Query: 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517
           +++ ++ ++L  MYM+ G + +   V      + + +WN LI+G A NG  +  L ++  
Sbjct: 121 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKM 180

Query: 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548
           MK SG  PN+ITFV VL +C  + +  +G +
Sbjct: 181 MKISGCRPNKITFVTVLSSCSDLAIRGQGQQ 211



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 176/400 (44%), Gaps = 73/400 (18%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP---- 224
           +N LIN Y   GDL  ARK+FDE P   L +WN+++AG +  +  EE   ++ +M     
Sbjct: 26  SNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGF 85

Query: 225 -----------------------------------ERNIIASNSMIVLFGRKGNVAEACR 249
                                              E +++ ++S+  ++ R G + +   
Sbjct: 86  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEI 145

Query: 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309
           + + MP ++LV+W+ LI    QN   E  L L+  M       +++  V+VLS+C++L +
Sbjct: 146 VIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 205

Query: 310 VKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISG 369
              G  +HA A+KIG    + + ++LI MYS CG +  A K F    + D + W+SMIS 
Sbjct: 206 RGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISA 265

Query: 370 YLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429
           Y   G  ++A  LF+ M E+                                +  +E   
Sbjct: 266 YGFHGQGDEAIELFNTMAEQT------------------------------NMEINEVAF 295

Query: 430 VSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
           ++++ AC+H    D+G +     + K G K      T ++D+  + GC+D A  +     
Sbjct: 296 LNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMP 355

Query: 489 EK-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
            K  +  W  L+    ++  A+ +  +F E+ +  + PN+
Sbjct: 356 IKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPND 393



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +N M+   IQ    ++ + L++ M       D YT   +   SA   
Sbjct: 44  KVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLR 103

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           SV  G+ IH + +K G + D+ VN++L +MY   G L     +    PV +LV+WN+++ 
Sbjct: 104 SVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIM 163

Query: 206 GYVNADNVEEAKFIY----------NKMPERNIIASNS---------------------- 233
           G       E   ++Y          NK+    +++S S                      
Sbjct: 164 GNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASS 223

Query: 234 -------MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
                  +I ++ + G + +A + F E   +D V WS++IS Y  +   +EA+ LF  M 
Sbjct: 224 VVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA 283

Query: 287 DHRVM-VDEVVVVSVLSACANLTVVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGE 344
           +   M ++EV  +++L AC++  +   G  +  + V K G +  +     ++ +    G 
Sbjct: 284 EQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 343

Query: 345 ITTAEKLFDAGH-NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD 390
           +  AE +  +     D++ W +++S      + E A+ +F  +++ D
Sbjct: 344 LDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 390


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 335/570 (58%), Gaps = 3/570 (0%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
            ++I  +G+ G + +A +LF  +P++D V+W+ ++S    + +  +A  + + ++   + 
Sbjct: 47  KTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQ 106

Query: 292 VDEVVVVSVLSACANLTVV--KAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
            D  V  S++ ACANL  V  K G  +HA  +         ++++L+ MY+         
Sbjct: 107 PDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGR 166

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
            +FD+   L  ISW +MISGY + G   +A  LF     K++ +W+ +ISG  Q    ++
Sbjct: 167 AVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNAND 226

Query: 410 TLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468
            L LF+EM+  G+   D   L SV+ AC +    + GK +H  +   G +    +   L+
Sbjct: 227 ALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALV 286

Query: 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528
           DMY K   V  A  +F     K V SW ++I+G A +GLA+++L ++ +M  +GV PNE+
Sbjct: 287 DMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEV 346

Query: 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIES 588
           TFVG++ AC H+GLV +G   F SM+++  + P+ +HY C++DL  R+G L EAE LI +
Sbjct: 347 TFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRT 406

Query: 589 MPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648
           MP+ PD  TW ALL ACK HG+ +M  R+   L++L+P+    ++LLSNI+A  G W++V
Sbjct: 407 MPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENV 466

Query: 649 LEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708
             VR +M  + V K+PG S ++       F AG+ + P  +EI  ++ ++  +++  GY 
Sbjct: 467 SMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYV 526

Query: 709 PDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
           PDT  V  D+DQ+EKE  LF HSE+LA+A+GL+   P   IRI+KNLR+C DCHT  K I
Sbjct: 527 PDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLI 586

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S    REI VRD  R+HHFK G CSC DFW
Sbjct: 587 SAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 165/380 (43%), Gaps = 75/380 (19%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           + K+F  L   +   + T++ A    N+P +A  +   +L+  +  D++ +  L +A A 
Sbjct: 62  ALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACAN 121

Query: 144 RLSVFE--GKLIHDHVLKAGFDSDVYVNNTLINMYA------------------------ 177
             SV    GK +H   L + F  D  V ++L++MYA                        
Sbjct: 122 LGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWT 181

Query: 178 --VCGDLSAARKL-----FDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP------ 224
             + G   + RKL     F ESP  +L +W ++++G V + N  +A +++ +M       
Sbjct: 182 AMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSI 241

Query: 225 ----------------------------------ERNIIASNSMIVLFGRKGNVAEACRL 250
                                             E  +  SN+++ ++ +  +V  A  +
Sbjct: 242 ADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYI 301

Query: 251 FKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310
           F EM +KD+VSW+++I    Q+ + EEAL L+ +M+   V  +EV  V ++ AC+++ +V
Sbjct: 302 FCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLV 361

Query: 311 KAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMIS 368
             G ++    V+  GI   +     L+ ++S  G +  AE L        D  +W +++S
Sbjct: 362 SKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLS 421

Query: 369 GYLKCGSVEKARALFDAMIE 388
                G+ + A  + D +++
Sbjct: 422 ACKHHGNTKMAVRIADHLLD 441



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 43/203 (21%)

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
            K +HA I K+GL  +     TLID Y K G + +AL++F    ++   +W  ++    +
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG----------------------- 541
           + L  K+  +   +   G+ P+   F  ++ AC ++G                       
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 542 --------------LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
                         L D G   F+S+      E +S  +  M+    R+G   EA EL  
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSI-----FELSSISWTAMISGYARSGRKLEALELFR 201

Query: 588 SMPMSPDVATWGALLGACKKHGD 610
             P   ++  W AL+    + G+
Sbjct: 202 ESPFK-NLYAWTALISGLVQSGN 223


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/689 (35%), Positives = 366/689 (53%), Gaps = 74/689 (10%)

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           K +H H+LK+G     +  + LI+ Y  C  ++ ARKLFDE P   +V+WNS+++ +V+ 
Sbjct: 21  KSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 211 DNVEEAKFIYNKMPERNII----------------------------------------A 230
              +EA  +Y+ M    ++                                         
Sbjct: 80  GKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFV 139

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +  ++ ++ + G + +A  +F  +  KD+V ++ALI  Y Q  +  EAL +F +M+  R+
Sbjct: 140 ATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRI 199

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
             +E  + SVL +C NL  +  G  +H L VK G+E  +  Q +L+ MYS          
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYS---------- 249

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
                                KC  VE +  +F+++     V+W++ I G  Q+ +    
Sbjct: 250 ---------------------KCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIA 288

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           LS+F EM    I P+  T  S++ AC+ L  L+ G+ IHA   K G+  N  +   LI +
Sbjct: 289 LSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHL 348

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G V+ A  VF    E  V S N +I  +A NG   ++LE+F  MKK G  PN +TF
Sbjct: 349 YGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTF 408

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           + +L AC + GLV+EG + F+ +   H +E    HY CM+DLLGRA   +EA  LIE   
Sbjct: 409 ISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEE-G 467

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
            +PDV  W  LL ACK HG+ EM E+  +K+++  P   G H+LL+NI+AS G+WD+V+E
Sbjct: 468 KNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIE 527

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           ++       + K P  S ++ +  +H F+AGD +HP+ +EI  ML E+ +K+   GY PD
Sbjct: 528 MKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPD 587

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPN-PIRIMKNLRICNDCHTAAKFIS 769
           T  V  D+++E+K + L+ HSEKLAIAF L      N  IRI KNLR+C DCH+  KF+S
Sbjct: 588 TKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVS 647

Query: 770 RAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
               R+I+ RD  RFHHFK G CSC D+W
Sbjct: 648 LLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 213/482 (44%), Gaps = 78/482 (16%)

Query: 90  FLESPNGFI--FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSV 147
           F E PN  I  +N+M+ +++ R   ++AI LY  ML   V  D YT+  + +A +     
Sbjct: 58  FDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVS 117

Query: 148 FEGKLIHDHVLKAGFD-SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
            EG+  H   +  GF+ SD +V   +++MYA  G +  AR +FD     D+V + +++ G
Sbjct: 118 REGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVG 177

Query: 207 YVNADNVEEAKFIYNKM------PERNIIAS----------------------------- 231
           Y       EA  ++  M      P    +AS                             
Sbjct: 178 YNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESV 237

Query: 232 ----NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
                S++ ++ +   V ++ ++F  +     V+W++ I    QN   E AL +F  MI 
Sbjct: 238 VASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIR 297

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
             +  +     S+L AC++L +++AG  +HA+ VK+G++    +  ALIH+Y  CG +  
Sbjct: 298 CSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEK 357

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           A  +F++   LD++S N+MI                                 YAQ+   
Sbjct: 358 ARSVFESLTELDVVSINTMI-------------------------------YAYAQNGFG 386

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTT 466
            E L LF  M+  G +P+  T +S++ AC +   +++G  I + IR N  +++     T 
Sbjct: 387 HEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTC 446

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG---LADKSL-EMFSEMKKSG 522
           +ID+  +    + A  +    +   V  W  L+    ++G   +A+K + +M  +  + G
Sbjct: 447 MIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDG 506

Query: 523 VT 524
            T
Sbjct: 507 GT 508



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 160/373 (42%), Gaps = 47/373 (12%)

Query: 59  IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICL 118
           ++D F A+ ++        F +M  +  +F  +   +  +F  ++  Y QR +  +A+ +
Sbjct: 134 VSDGFVATGIVDMYA---KFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEV 190

Query: 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178
           ++ M+ + +  + YT   +  +      +  GKLIH  V+K+G +S V    +L+ MY+ 
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSK 250

Query: 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--------------- 223
           C  +  + K+F+       V+W S + G V     E A  ++ +M               
Sbjct: 251 CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSI 310

Query: 224 ------------------------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDL 259
                                    + N     ++I L+G+ GNV +A  +F+ + + D+
Sbjct: 311 LHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDV 370

Query: 260 VSWSALISCYEQNEMYEEALVLF--MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           VS + +I  Y QN    EAL LF  M  + H+  V  V  +S+L AC N  +V+ G  + 
Sbjct: 371 VSINTMIYAYAQNGFGHEALELFERMKKLGHKPNV--VTFISILLACNNAGLVEEGCQIF 428

Query: 318 ALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
           +L      IE   +    +I +         A  L + G N D+I W ++++     G V
Sbjct: 429 SLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEV 488

Query: 377 EKARALFDAMIEK 389
           E A      M+++
Sbjct: 489 EMAEKFMKKMLDQ 501


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/678 (33%), Positives = 382/678 (56%), Gaps = 47/678 (6%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADT-FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPN 95
           +  C++ K    I +++++   +A + F  ++L++  +    F    Y+ K+F  +  PN
Sbjct: 9   IHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSR---FGATDYAHKVFDEITQPN 65

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG-KLIH 154
            +++ +++  Y++     +A  L+  M    + V N+T   + +A A RL+ F+G + ++
Sbjct: 66  AYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALA-RLTRFKGGQAVY 124

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
             VLK GF  D+ V N++++++  C  +  AR+ FDE    D+VSWN +++GY N D V+
Sbjct: 125 GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVD 184

Query: 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
            A+  +++MPERN+++  SMI  + + G++AEA  LF  MP KDL SW+ ++S Y     
Sbjct: 185 IARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGY----- 239

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
                   M++ D                C N  ++     +H               N 
Sbjct: 240 --------MDIGD----------------CVNARIIFGKMPIHDTGS----------WNI 265

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +I  +   GE+ +A+  FD   N ++ISW  M+ GY+K G    AR LFD M  K++V+W
Sbjct: 266 MISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTW 325

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIR 453
           STMI GYA++ Q  + L LF   +   I+PDE  ++ +ISAC+ L  +D  +  IH Y+ 
Sbjct: 326 STMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVG 385

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
            + L    +  T+LIDMY K G ++ AL++F     K +  ++ +I   A +GL   ++ 
Sbjct: 386 PSLLSDLRVF-TSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIF 444

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
           +F +M+++ + P+ +TF+GVL AC H GLVDEG ++F  M +E  ++P+ KHY C+VDLL
Sbjct: 445 LFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLL 504

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633
           GR G L+EA  LI +MP++P    WGALL AC+ H + ++ E    +L +++PD+ G ++
Sbjct: 505 GRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYI 564

Query: 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDN 693
           LLSNI+A+ GRW  V +VR  +    V K  G S IE + ++HEF+ GD +H   + I  
Sbjct: 565 LLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISL 624

Query: 694 MLDEMAKKLKLEGYAPDT 711
           +L  + + +KL GY  D+
Sbjct: 625 ILYLLCEDMKLSGYLIDS 642


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/773 (32%), Positives = 384/773 (49%), Gaps = 106/773 (13%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-------------- 142
           F  N ++ AY++    + A+ L+  M   N    N +Y  L Q  A              
Sbjct: 85  FATNILLNAYVKAGFDKDALNLFDEMPERN----NVSYVTLTQGYACQDPVGLYSRLHRE 140

Query: 143 ---LRLSVFEGKL--------------IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
              L   VF   L              +H  ++K G+DS+ +V   LIN Y+VCG + +A
Sbjct: 141 GHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSA 200

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN------------- 232
           R +F+     D+V W  I++ YV     E++  + ++M     + +N             
Sbjct: 201 RSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGL 260

Query: 233 --------------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                      ++ L+ + G++++A ++F EMPK D+V WS +I
Sbjct: 261 GAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMI 320

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           + + QN    +A+ +F+ M +  V+ +E  + S+L+ CA       G  +H L VK+G +
Sbjct: 321 ARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFD 380

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             + + NALI +                               Y KC  ++ A  LF  +
Sbjct: 381 LDVYVSNALIDV-------------------------------YAKCEKMDTAVKLFAEL 409

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             K+VVSW+T+I GY    +  + L++F E   + +   E T  S + AC  L +++ G 
Sbjct: 410 SSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGV 469

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +H    K        +  +LIDMY K G +  A  VF+  E   V+SWNALI G++ +G
Sbjct: 470 QVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHG 529

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L  ++L +F  MK S   PN +TF+GVL  C + GL+D+G   F SMI +H +EP  +HY
Sbjct: 530 LGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHY 589

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMV L GR+G L +A  LIE +P  P V  W A+L A     + E   R   +++++ P
Sbjct: 590 TCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINP 649

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
             +  +VLLSN++A   +W +V  +R  M  +GV K PG S IE  G +H F  G   HP
Sbjct: 650 KDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHP 709

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI-SP 745
            +  I+ ML+ +  K    GY PD   V  D+D EEK+  L+ HSE+LA+A+GL+ + S 
Sbjct: 710 DMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSS 769

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            N I IMKNLRIC+DCH+A K IS    R++V+RD +RFHHF  G CSC D W
Sbjct: 770 RNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 163/349 (46%), Gaps = 39/349 (11%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEAC 248
           P LD  ++ ++L   +  ++   AK I+  + ++    ++ A+N ++  + + G   +A 
Sbjct: 45  PCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDAL 104

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            LF EMP+++ VS+  L   Y      ++ + L+  +      ++  V  S L    +L 
Sbjct: 105 NLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLD 160

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
             +    +H+  VK+G +    +  ALI+ YS C                          
Sbjct: 161 KAEICWWLHSPIVKLGYDSNAFVGAALINAYSVC-------------------------- 194

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
                GSV+ AR++F+ ++ KD+V W+ ++S Y ++  F ++L L   M   G  P+  T
Sbjct: 195 -----GSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYT 249

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             + + A   L A    K +H  I K   +++  +G  L+ +Y +LG + +A +VF+   
Sbjct: 250 FDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           +  V  W+ +I  F  NG  +K++++F  M++  V PNE T   +L  C
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGC 358



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 175/393 (44%), Gaps = 50/393 (12%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139
           +MS +FK+F  +   +   ++ M+  + Q     +A+ ++  M    V  + +T   +  
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILN 356

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
             A+      G+ +H  V+K GFD DVYV+N LI++YA C  +  A KLF E    ++VS
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVS 416

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPE---------------------------------- 225
           WN+++ GY   +N+ E     N   E                                  
Sbjct: 417 WNTVIVGY---ENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHG 473

Query: 226 --------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEE 277
                   + +  SNS+I ++ + G++  A  +F EM   D+ SW+ALIS Y  + +  +
Sbjct: 474 LAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 278 ALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALI 336
           AL +F  M       + +  + VLS C+N  ++  G     ++    GIE  +     ++
Sbjct: 534 ALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMV 593

Query: 337 HMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVV 392
            ++   G++  A  L +   +   ++ W +M+S  +   + E AR   + +++   KD  
Sbjct: 594 RLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEA 653

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           ++  + + YA   Q++   S+   M+  G++ +
Sbjct: 654 TYVLLSNMYAGAKQWANVASIRKSMKEKGVKKE 686



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 49/283 (17%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYSFKIFAFLESPN 95
           + KC    +  Q+   ++  G   D + ++ LI    D+    E M  + K+FA L S N
Sbjct: 360 IGKCSGLGE--QLHGLVVKVGFDLDVYVSNALI----DVYAKCEKMDTAVKLFAELSSKN 413

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +NT++  Y       +A+ +++  L N V V   T+     A A   S+  G  +H 
Sbjct: 414 VVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHG 473

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY-------- 207
             +K      V V+N+LI+MYA CGD+  A+ +F+E   +D+ SWN++++GY        
Sbjct: 474 LAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 208 ---------------------------VNADNVEEAKFIYNKM-----PERNIIASNSMI 235
                                       NA  +++ +  +  M      E  +     M+
Sbjct: 534 ALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMV 593

Query: 236 VLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEE 277
            LFGR G + +A  L + +P +  ++ W A++S    N+  EE
Sbjct: 594 RLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSA-SMNQYNEE 635


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/755 (30%), Positives = 403/755 (53%), Gaps = 72/755 (9%)

Query: 80   EMSYSFKIFAFLESP-NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
            +M  + ++F  + S  N  ++N +M  Y +    ++++ L++ M    +  D +    L 
Sbjct: 358  DMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLL 417

Query: 139  QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            +         +G + H +++K GF +   V N LI+ YA    +  A  +FD  P  D +
Sbjct: 418  KCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTI 477

Query: 199  SWNSILAGY----VNADNVE-------------------------------EAKFIYNKM 223
            SWNS+++G     +N++ +E                                 + ++   
Sbjct: 478  SWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYS 537

Query: 224  PERNIIA----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
             +  +I     +N+++ ++    +     ++F+ M +K++VSW+A+I+ Y +  ++++  
Sbjct: 538  VKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVA 597

Query: 280  VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             L   M+   +  D   V SVL   A    +K G SVH  A++ G+E  + + NAL+ MY
Sbjct: 598  GLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMY 657

Query: 340  SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
                                           + C ++E+AR +FD +  KD++SW+T+I 
Sbjct: 658  -------------------------------VNCRNMEEARLVFDHVTNKDIISWNTLIG 686

Query: 400  GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            GY++++  +E+ SLF +M     +P+  T+  ++ A   + +L++G+ IHAY  + G   
Sbjct: 687  GYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLE 745

Query: 460  NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
            +S     L+DMY+K G +  A  +F    +K + SW  +I G+ M+G    ++ +F +M+
Sbjct: 746  DSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMR 805

Query: 520  KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
             SGV P+  +F  +L AC H GL  EG + FN+M +E+++EP  KHY C+VDLL   G L
Sbjct: 806  GSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNL 865

Query: 580  KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
            KEA E IESMP+ PD + W +LL  C+ H D ++ E+V  ++ +L+P++ G++VLL+NI+
Sbjct: 866  KEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIY 925

Query: 640  ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
            A   RW+ V +++  +  RG+ +  GCS IE  G +H F+A +R HP+ N I   LD +A
Sbjct: 926  AEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVA 985

Query: 700  KKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICN 759
            ++++ EG+ P         +    +  L  HS KLA+ FG++ +    PIR+ KN ++C+
Sbjct: 986  RRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCS 1045

Query: 760  DCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSC 794
             CH AAKFIS+  +REI++RD  RFHHF+ G CSC
Sbjct: 1046 HCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/578 (24%), Positives = 247/578 (42%), Gaps = 83/578 (14%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  + + +   +N+ +  Y       +A+ L+  M +    + + T   +  A
Sbjct: 249 MEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDV---------YVNNTLINMYAVCGDLSAARKLFDE 191
            A       GK++H + +K+G   D+          + + L+ MY  CGD+ +AR++FD 
Sbjct: 309 CAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDA 368

Query: 192 SPVLDLVS-WNSILAGYVNADNVEEAKFIYNKMPERNIIAS------------------- 231
            P    V  WN I+ GY  A   EE+  ++ +M E  I                      
Sbjct: 369 MPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARD 428

Query: 232 --------------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ 271
                               N++I  + +   +  A  +F  MP +D +SW+++IS    
Sbjct: 429 GLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS 488

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N +  EA+ LF+ M      +D   ++SVL ACA       G  VH  +VK G+    +L
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSL 548

Query: 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDV 391
            NAL+ MYS+C +  +  ++F      +++SW +MI+ Y + G       LFD       
Sbjct: 549 ANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG-------LFD------- 594

Query: 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451
                            +   L  EM   GI+PD   + SV+       +L QGK +H Y
Sbjct: 595 -----------------KVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGY 637

Query: 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511
             +NG++    +   L++MY+    ++ A  VF     K + SWN LI G++ N  A++S
Sbjct: 638 AIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANES 697

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
             +FS+M      PN +T   +L A   +  ++ G       ++   LE +S     +VD
Sbjct: 698 FSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLE-DSYTSNALVD 755

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  + G L  A  L + +    ++ +W  ++     HG
Sbjct: 756 MYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMHG 792



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 157/627 (25%), Positives = 264/627 (42%), Gaps = 90/627 (14%)

Query: 92  ESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151
            +P   + ++ +   IQR      +     +L ++ GV   +Y  + Q      S+   +
Sbjct: 55  RNPPSRVLSSDVNLRIQRLCQAGDLAAALRLLGSDGGVGVRSYCAVVQLCGEERSLEAAR 114

Query: 152 LIHDHVLKAGFDSDV--YVNNTLINMYAVCGDLSAARKLFDESP--VLDLVSWNSILAGY 207
             H  +++AG    +   +   L+  Y  CGDL  AR +FDE P  V D+  W S+++ Y
Sbjct: 115 RAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAY 173

Query: 208 VNADNVEEAKFIYNKM------PERNIIA------------------------------- 230
             A + +E   ++ +M      P+ + ++                               
Sbjct: 174 AKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEAC 233

Query: 231 --SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH 288
             +N++I L+ R G + +A ++F  M  +D +SW++ IS Y  N  ++ A+ LF  M   
Sbjct: 234 AVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSE 293

Query: 289 RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
              +  V V+SVL ACA L     G  VH  ++K G+                       
Sbjct: 294 GTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGL----------------------L 331

Query: 349 EKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQF 407
             L      +D    + ++  Y+KCG +  AR +FDAM  K +V  W+ ++ GYA+  +F
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            E+L LF +M   GI PDE  L  ++   T L     G   H Y+ K G      +   L
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNAL 451

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           I  Y K   +DNA+ VF     +   SWN++I G   NGL  +++E+F  M   G   + 
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 528 ITFVGVLGACRH-----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEA 582
            T + VL AC       +G V  G+     +I E  L         ++D+          
Sbjct: 512 TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA------NALLDMYSNCSDWHST 565

Query: 583 EELIESMPMSPDVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640
            ++  +M    +V +W A++ +  + G  D   G      L  ++PD      + S +H 
Sbjct: 566 NQIFRNMAQK-NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPD---VFAVTSVLHG 621

Query: 641 SKGRWDDVLE----VRGMMVRRGVVKI 663
             G  D+ L+    V G  +R G+ K+
Sbjct: 622 FAG--DESLKQGKSVHGYAIRNGMEKL 646



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 180/415 (43%), Gaps = 46/415 (11%)

Query: 54  ILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQ 113
           + TGLI +T  A+ L+   ++   +   +   +IF  +   N   +  M+ +Y +  +  
Sbjct: 538 VKTGLIGETSLANALLDMYSNCSDWHSTN---QIFRNMAQKNVVSWTAMITSYTRAGLFD 594

Query: 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
           +   L + M+ + +  D +    +    A   S+ +GK +H + ++ G +  + V N L+
Sbjct: 595 KVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALM 654

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM-----PE--- 225
            MY  C ++  AR +FD     D++SWN+++ GY   +   E+  +++ M     P    
Sbjct: 655 EMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQFKPNTVT 714

Query: 226 -----------------RNIIA-------------SNSMIVLFGRKGNVAEACRLFKEMP 255
                            R I A             SN+++ ++ + G +  A  LF  + 
Sbjct: 715 MTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLT 774

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
           KK+L+SW+ +I+ Y  +   ++A+ LF  M    V  D     ++L AC +  +   G  
Sbjct: 775 KKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWK 834

Query: 316 -VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGYLKC 373
             +A+  +  IE  +     ++ + S  G +  A +  ++     D   W S++ G    
Sbjct: 835 FFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIH 894

Query: 374 GSVEKARALFDAM--IEKDVVSWSTMISG-YAQHDQFSETLSLFMEMQHHGIRPD 425
             V+ A  + D +  +E +   +  +++  YA+ +++     L  ++   G+R +
Sbjct: 895 RDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLREN 949


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/704 (32%), Positives = 369/704 (52%), Gaps = 78/704 (11%)

Query: 138 AQASALRLSVFEGKLIHDHVL---KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV 194
           A +S LR     G+ IH H++   ++    DVY  N+LIN+Y  CG+   ARK+FD  P 
Sbjct: 42  ANSSYLR----TGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPE 97

Query: 195 LDLVSWNSILAGYVNAD------------------------------------NVEEAKF 218
            ++VSW +++ GY N+                                      +EE K 
Sbjct: 98  RNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQ 157

Query: 219 IYNKMPERNIIA----SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274
            +    +  +++     N+++ ++       EA R+  ++P  DL  +S+ +S Y +   
Sbjct: 158 FHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGA 217

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334
           ++E   +   M    +++D +  +S L  C+NL  +     +H+  V++G    +    A
Sbjct: 218 FKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGA 277

Query: 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW 394
           +I+MY                                KCG V  A+ +FD    +++V  
Sbjct: 278 IINMYG-------------------------------KCGKVLYAQRVFDNTHAQNIVLN 306

Query: 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454
           +T++  Y Q   F E L+LF +M    + P+E T    +++   L  L  G  +H  + K
Sbjct: 307 TTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLK 366

Query: 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
           +G + + ++G  L++MY K G +++A + F G   + + +WN +I GF+ +GL  + LE 
Sbjct: 367 SGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEA 426

Query: 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574
           F  M  +G  PN ITF+GVL AC H+G V++G  +FN ++++  ++P+ +HY C+V LL 
Sbjct: 427 FDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLS 486

Query: 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           +AGM K+AE+ + + P+  DV  W ALL AC    +  +G++V    +   P+  G +VL
Sbjct: 487 KAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVL 546

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           LSNIHA    W+ V EVR +M +RGV K PG S I      H FLA +  HP+I  I   
Sbjct: 547 LSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAK 606

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           + E+  K++  GY+PD   V  D+D+E++E  L  HSEKLA+A+GL+     +P+ + KN
Sbjct: 607 IKEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYVTKN 666

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +RIC+DCH+A K IS+   R IV+RD +RFHHF+ G CSC D+W
Sbjct: 667 VRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 37  LQKCQSFKQFT---QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES 93
           L+ C + +      QI S+M+  G  ++  A+  +I         +   Y+ ++F    +
Sbjct: 244 LRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVL---YAQRVFDNTHA 300

Query: 94  PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153
            N  +  T+M AY Q    ++A+ L+  M    V  + YT+ +   + A    +  G L+
Sbjct: 301 QNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLL 360

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  VLK+G+ + V V N L+NMYA  G +  ARK F      D+V+WN+++ G+ +    
Sbjct: 361 HGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLG 420

Query: 214 EEAKFIYNKM------PERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSW 262
            E    +++M      P R  I    ++      G V +    F ++ KK     DL  +
Sbjct: 421 REGLEAFDRMMIAGEIPNR--ITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHY 478

Query: 263 SALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
           + ++    +  M+++A      M    +  D V   ++L+AC      + G  V   A+
Sbjct: 479 TCIVGLLSKAGMFKDAEDF---MRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAI 534


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/580 (39%), Positives = 336/580 (57%), Gaps = 33/580 (5%)

Query: 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
           +  +P    ++  +M + F + G +  A RLF+EMP +++++W+A+++    +    E  
Sbjct: 142 FGYLPGDPFVSCAAMDMYF-KTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETF 200

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
             +  + +   M + V V +  +ACA    +  G   H   V                  
Sbjct: 201 KAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVV------------------ 242

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
            +CG        FD    +D+   N+M+  Y KC    KARA+FD M  ++ VSW +MI 
Sbjct: 243 -TCG--------FD----MDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIV 289

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            YAQH    + L+++M  ++ G  P +  + SV++ C  L+ L+ G+ +HA   ++ +  
Sbjct: 290 AYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDA 349

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N  + + L+DMY K G V++A +VF    E+ + +WNA+I G+A  G A  +L +F  M 
Sbjct: 350 NIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMI 409

Query: 520 KSGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           +SG T PN IT V V+ AC   GL  +G+  F++M +   +EP ++HY C+VDLLGRAGM
Sbjct: 410 RSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGM 469

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
            + A E+I+ MPM P ++ WGALLGACK HG  E+G     KL EL P   G HVLLSN+
Sbjct: 470 EERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNM 529

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
            AS GRW +  +VR  M   G+ K PGCS I    ++H F A D  H + +EI  +L ++
Sbjct: 530 LASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKL 589

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            K+++  GY PDT    +D+++EEKET +F+HSEKLA+AFGLI I P  PIRI KNLRIC
Sbjct: 590 KKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRIC 649

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCH A KF+S    REI+VRD +RFH+FK   CSC D+W
Sbjct: 650 VDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 202/459 (44%), Gaps = 76/459 (16%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL---RLSVFE 149
           +P    F   +    Q   P  A+  +  ML   +  +++T+P   +A+A    R S   
Sbjct: 73  NPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTV- 131

Query: 150 GKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV 208
           G  IH   L+ G+   D +V+   ++MY   G L  AR+LF+E P  ++++WN+++   V
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 209 -NADNVEEAKFIY-----NKMP---------------------------------ERNII 229
            +   +E  K  +       MP                                 + ++ 
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVS 251

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            SN+M+  +G+     +A  +F  M  ++ VSW ++I  Y Q+   E+AL ++M   +  
Sbjct: 252 VSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTG 311

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
               + +V SVL+ CA L  +  G ++HA+AV+  I+  I + +AL+ MY  CG +  AE
Sbjct: 312 EEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAE 371

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++F      +L++WN+MI GY   G  + A A+FDAMI                      
Sbjct: 372 QVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSG------------------- 412

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLI 468
                      G  P+  TLV+VI+AC+       G  +   +R+  G++  +     ++
Sbjct: 413 -----------GTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVV 461

Query: 469 DMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAMNG 506
           D+  + G  + A E+      +  +S W AL+    M+G
Sbjct: 462 DLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHG 500



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVI--SACTHLVALDQGKWI 448
           VVS++  ISG AQH +    LS F  M   G+RP++ T  S    +AC        G  I
Sbjct: 76  VVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQI 135

Query: 449 HAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGL 507
           HA   + G L  +  +    +DMY K GC+  A  +F     + V +WNA++    ++G 
Sbjct: 136 HALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGR 195

Query: 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567
             ++ + +  ++++G  PN ++      AC     +  G + F+  +     + +     
Sbjct: 196 PLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQ-FHGFVVTCGFDMDVSVSN 254

Query: 568 CMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612
            MVD  G+     +A  + + M +   V +W +++ A  +HG  E
Sbjct: 255 AMVDFYGKCRCAGKARAVFDGMRVRNSV-SWCSMIVAYAQHGAEE 298



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 145/336 (43%), Gaps = 53/336 (15%)

Query: 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL 197
           A A A+ LS+  G+  H  V+  GFD DV V+N +++ Y  C     AR +FD   V + 
Sbjct: 224 ACAGAMFLSL--GEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNS 281

Query: 198 VSWNSILAGYVNADNVEEAKFIY------NKMP--------------------------- 224
           VSW S++  Y      E+A  +Y       + P                           
Sbjct: 282 VSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAV 341

Query: 225 ------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278
                 + NI  +++++ ++G+ G V +A ++F +MP+++LV+W+A+I  Y      + A
Sbjct: 342 AVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNA 401

Query: 279 LVLFMNMI-DHRVMVDEVVVVSVLSACANLTVVKAGTSVH-ALAVKIGIECYINLQNALI 336
           L +F  MI       + + +V+V++AC+   + K G  +   +  + G+E        ++
Sbjct: 402 LAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVV 461

Query: 337 HMYSSCGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKARALFDAMIEKDV---- 391
            +    G    A ++         IS W +++      G  E  R   + + E D     
Sbjct: 462 DLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSG 521

Query: 392 --VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
             V  S M+   A   +++E   +  EM++ GI+ +
Sbjct: 522 NHVLLSNML---ASAGRWAEATDVRKEMKNVGIKKE 554



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 83/176 (47%), Gaps = 5/176 (2%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   + +M+ AY Q    + A+ +Y    N      ++    +    A  L 
Sbjct: 272 VFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLG 331

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +  G+ +H   +++  D++++V + L++MY  CG +  A ++F + P  +LV+WN+++ G
Sbjct: 332 LNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGG 391

Query: 207 YVNADNVEEAKFIYNKMPERNIIASN-----SMIVLFGRKGNVAEACRLFKEMPKK 257
           Y +  + + A  +++ M      + N     ++I    R G   +   LF  M ++
Sbjct: 392 YAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRER 447


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/562 (40%), Positives = 323/562 (57%), Gaps = 44/562 (7%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI----DHRVMVDEVVVVSVLSAC 304
           ++ + +   +  +W+ LI  Y ++ ++++  +L    I    ++ +  D+     VL AC
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364
           A L  +  G  VHA  +K+G E                               LD    N
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFE-------------------------------LDTYICN 124

Query: 365 SMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           S+I  Y  CG +E AR +FD M E ++VVSW+ MI  YA+   +   L +F EM      
Sbjct: 125 SLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMK-VYE 183

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK---INSILGTTLIDMYMKLGCVDNA 480
           PD  T+ SVI AC  L +L  G W+HA++ K   K    + ++ T L+DMY K G ++ A
Sbjct: 184 PDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIA 243

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACRH 539
            +VF G   + VSSWN++I+GFA++G A  +L+ F  M K   + PN ITFVGVL AC H
Sbjct: 244 KQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNH 303

Query: 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWG 599
            G+VDEG  +F  M +E+ +EP+  HYGC+VDL  RAG ++EA  ++  MP+ PD   W 
Sbjct: 304 SGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWR 363

Query: 600 ALLGAC-KKHGDHEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657
           +LL AC K+H   E+ E + +++ E       G +VLLS ++AS  RW+DV  +R +M  
Sbjct: 364 SLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMND 423

Query: 658 RGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAF- 716
           +GV K PGCS+IE NG  HEF AGD  HPQ  +I   ++E+ +KL+  GY PD       
Sbjct: 424 KGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLI 483

Query: 717 DIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREI 776
           D   E K+ T+  HSE+LAIAFGL+   P  PIR+ KNLR+CNDCH   K ISR ++ EI
Sbjct: 484 DEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEI 543

Query: 777 VVRDRHRFHHFKHGSCSCMDFW 798
           +VRDR RFHHFK GSCSCMD+W
Sbjct: 544 IVRDRVRFHHFKDGSCSCMDYW 565



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 175/406 (43%), Gaps = 100/406 (24%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNV-PQQAICLYKLMLN---NNVGVDNYTYPLLAQAS 141
           +I   + +PN F +N ++++Y +  +  Q+AI LYK ++    N +  D +TYP + +A 
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           A   S+FEGK +H HVLK GF+ D Y+ N+LI+ YA CG L  ARK+FD      +  W 
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDR-----MCEW- 149

Query: 202 SILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261
                                   RN+++ N MI  + + G+      +F EM K     
Sbjct: 150 ------------------------RNVVSWNVMIDSYAKVGDYDIVLIMFCEMMK----- 180

Query: 262 WSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321
                       +YE                D   + SV+ AC  L  +  G  VHA  +
Sbjct: 181 ------------VYEP---------------DCYTMQSVIRACGGLGSLSLGMWVHAFVL 213

Query: 322 K---IGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
           K     + C + +   L+ MY  CG +  A+++F+     D+ SWNS+I G+   G  + 
Sbjct: 214 KKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKA 273

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A   F  M++ +                               I P+  T V V+SAC H
Sbjct: 274 ALDYFVRMVKVE------------------------------KIVPNSITFVGVLSACNH 303

Query: 439 LVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
              +D+G  +     ++  ++ + +    L+D+Y + G +  AL V
Sbjct: 304 SGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNV 349



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 21/271 (7%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIF-AFLESPNGFIFNTMMRAY 106
           Q+ + ++  G   DT+  + LI F      ++E +   K+F    E  N   +N M+ +Y
Sbjct: 106 QVHAHVLKLGFELDTYICNSLIHFYASC-GYLETAR--KVFDRMCEWRNVVSWNVMIDSY 162

Query: 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA---GFD 163
            +       + ++  M+      D YT   + +A     S+  G  +H  VLK       
Sbjct: 163 AKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVV 221

Query: 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
            DV VN  L++MY  CG L  A+++F+     D+ SWNSI+ G+      + A   + +M
Sbjct: 222 CDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRM 281

Query: 224 PERNIIASNSMIVL-----FGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNE 273
            +   I  NS+  +         G V E    F+ M K+      LV +  L+  Y +  
Sbjct: 282 VKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAG 341

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
             +EAL +   M    +  D V+  S+L AC
Sbjct: 342 HIQEALNVVSEM---PIKPDAVIWRSLLDAC 369


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/791 (31%), Positives = 404/791 (51%), Gaps = 74/791 (9%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+L  +I  GL  +   A+ LI          E  Y   +F+ ++  +   +N+M+ AYI
Sbjct: 152 QVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACY---VFSGMDEHDTISWNSMIAAYI 208

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +  + ++++  +  M   +  +++ T   +        ++  G+ IH  VLK G++S+V 
Sbjct: 209 RNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVC 268

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM---- 223
            +NTLI MY+  G    A  +F      D++SWNS++A Y    N  +A  +   M    
Sbjct: 269 ASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMR 328

Query: 224 -----------------PE------------------RNIIASNSMIVLFGRKGNVAEAC 248
                            PE                   N+I  N+++ L+ + G + EA 
Sbjct: 329 RGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAK 388

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC-ANL 307
           ++F+ MPK+D V+W+ALI  +  +E  +EAL  F  M +  V ++ + + +VL AC A  
Sbjct: 389 KVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPN 448

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
            +++ G  +HA  +  G +    +QN+LI MY+                           
Sbjct: 449 DLLEHGMPIHAFIILTGFQSDEYVQNSLITMYA--------------------------- 481

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
               KCG +  +  +FD +  K+  +W+ M++  A H    E L   +EM+  G+  DE 
Sbjct: 482 ----KCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEF 537

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           +    ++A   L  L++G+ +H    K G   N  + +  +DMY K G +D+ L +    
Sbjct: 538 SFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRP 597

Query: 488 EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
             +   SWN L   F+ +G  +K+ E F EM   GV P+ +TFV +L AC H G+V+EG 
Sbjct: 598 INRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGL 657

Query: 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
            +++SMI+E  +     H  C++DLLGR+G   EAE  I+ MP+SP    W +LL ACK 
Sbjct: 658 AYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKT 717

Query: 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
           HG+ E+G +    L++L P  D  +VL SNI A+ G+W+DV ++R  M    + K P CS
Sbjct: 718 HGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACS 777

Query: 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
            ++    +  F  GD +HPQ +EI   L+E+ K +K  GY PD      D D+E+KE  L
Sbjct: 778 WVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNL 837

Query: 728 FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
           + HSE+LA+A+GLI+    + ++I KNLR+C DCH+  KF S    R+IV+RD +RFH F
Sbjct: 838 WNHSERLALAYGLISSPEGSTLKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQF 897

Query: 788 KHGSCSCMDFW 798
             G CSC D+W
Sbjct: 898 SGGQCSCTDYW 908



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 202/430 (46%), Gaps = 70/430 (16%)

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           + EG  +H  ++K G  SDV+V  +L+++Y   G  + A K+F E    ++VSW +++  
Sbjct: 46  LIEGVQVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVA 105

Query: 207 YVNADNVEEAKFIYNKMP---------------------------------------ERN 227
           YV+         IY +M                                        E N
Sbjct: 106 YVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETN 165

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +  +NS+I +FG  G+V EAC +F  M + D +SW+++I+ Y +N + +E+L  F  M  
Sbjct: 166 VSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFR 225

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
               ++   + ++L+ C ++  +K G  +H+L +K G    +   N LI MYS       
Sbjct: 226 VHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYS------- 278

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
                DAG                +C   E A  +F  M+EKD++SW++M++ YAQ    
Sbjct: 279 -----DAG----------------RC---EDAELVFQGMVEKDMISWNSMMACYAQDGNC 314

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
            + L L   M +     +  T  S ++AC+      +GK +HA +   GL  N I+G  L
Sbjct: 315 LDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNAL 374

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + +Y K G +  A +VF    ++   +WNALI G A +   D++L+ F  M++ GV  N 
Sbjct: 375 VTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINY 434

Query: 528 ITFVGVLGAC 537
           IT   VLGAC
Sbjct: 435 ITISNVLGAC 444



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 148/632 (23%), Positives = 294/632 (46%), Gaps = 80/632 (12%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           Q+   ++  GL++D F  + L+    +   +   + + K+F  +   N   +  +M AY+
Sbjct: 51  QVHGFIVKVGLLSDVFVGTSLVHLYGN---YGLAADAMKVFQEMIYKNVVSWTALMVAYV 107

Query: 108 QRNVPQQAICLYKLMLNNNVGV-DNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV 166
               P   + +Y+ M +  +   DN    +++   +L   +  G  +  HV+K G +++V
Sbjct: 108 DYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELL-GYQVLGHVIKYGLETNV 166

Query: 167 YVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV------------------ 208
            V N+LI+M+   G +  A  +F      D +SWNS++A Y+                  
Sbjct: 167 SVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRV 226

Query: 209 -----------------NADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEA 247
                            + DN++  + I++ + +     N+ ASN++I ++   G   +A
Sbjct: 227 HKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDA 286

Query: 248 CRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANL 307
             +F+ M +KD++SW+++++CY Q+    +AL L   M   R   + V   S L+AC++ 
Sbjct: 287 ELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDP 346

Query: 308 TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
                G  +HAL + +G+   + + NAL+ +Y+                           
Sbjct: 347 EFATEGKILHALVIHVGLHENVIVGNALVTLYA--------------------------- 379

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
               K G + +A+ +F  M ++D V+W+ +I G+A  ++  E L  F  M+  G+  +  
Sbjct: 380 ----KSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYI 435

Query: 428 TLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
           T+ +V+ AC      L+ G  IHA+I   G + +  +  +LI MY K G ++++  +F  
Sbjct: 436 TISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDR 495

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
              K  S+WNA++   A +G  +++L+   EM+++GV  +E +F   L A   + +++EG
Sbjct: 496 LTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEG 555

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            +  + +  +   + N       +D+ G+ G + +   +I   P++    +W  L  +  
Sbjct: 556 -QQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPR-PINRSRLSWNILTSSFS 613

Query: 607 KHGDHEMGERVGRKLVEL--QPDHDGFHVLLS 636
           +HG  E  +    +++ L  +PDH  F  LLS
Sbjct: 614 RHGFFEKAKETFHEMINLGVKPDHVTFVSLLS 645



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 34/337 (10%)

Query: 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT-VVKAGTSVHALAVKIGIECYINLQN 333
           Y E++  F  M D  V    + V S+++AC     ++  G  VH   VK+G+   + +  
Sbjct: 10  YRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGT 69

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
           +L+H+Y + G    A K+F                                 MI K+VVS
Sbjct: 70  SLVHLYGNYGLAADAMKVF-------------------------------QEMIYKNVVS 98

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+ ++  Y  + + S  ++++  M+  G+  ++ T+ SVIS C  L     G  +  ++ 
Sbjct: 99  WTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVI 158

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513
           K GL+ N  +  +LI M+   G V+ A  VF G +E    SWN++I  +  NGL  +SL 
Sbjct: 159 KYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLR 218

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573
            FS M +     N  T   +L  C  +  +  G R  +S++ +     N      ++ + 
Sbjct: 219 CFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWG-RGIHSLVLKFGWNSNVCASNTLITMY 277

Query: 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
             AG  ++AE + + M +  D+ +W +++    + G+
Sbjct: 278 SDAGRCEDAELVFQGM-VEKDMISWNSMMACYAQDGN 313



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 192/461 (41%), Gaps = 77/461 (16%)

Query: 28  INLSILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYS 84
           IN + L T L  C S    K    I S ++  G  ++  A++ LI   +D     +    
Sbjct: 230 INSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAEL- 288

Query: 85  FKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALR 144
             +F  +   +   +N+MM  Y Q      A+ L   M     G +  T+     A +  
Sbjct: 289 --VFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDP 346

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
               EGK++H  V+  G   +V V N L+ +YA  G +  A+K+F   P  D V+WN+++
Sbjct: 347 EFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALI 406

Query: 205 AGYVNADNVEEAKFIYNKMPERNI------------------------------------ 228
            G+ +++  +EA   +  M E  +                                    
Sbjct: 407 GGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGF 466

Query: 229 ----IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284
                  NS+I ++ + G++  +  +F  +  K+  +W+A+++    +   EEAL   + 
Sbjct: 467 QSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLE 526

Query: 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE 344
           M    V VDE      L+A A L +++ G  +H LAVK+G +    + +A + MY  CGE
Sbjct: 527 MRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGE 586

Query: 345 ITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404
           I    ++     N   +SWN + S + + G  EKA+  F  MI                 
Sbjct: 587 IDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMI----------------- 629

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445
                         + G++PD  T VS++SAC+H   +++G
Sbjct: 630 --------------NLGVKPDHVTFVSLLSACSHGGMVEEG 656



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 106/213 (49%), Gaps = 3/213 (1%)

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL-VALDQGKWIHAYIRKNG 456
           +SG+ +   + E++  F EM+  G++P    + S+++AC      L +G  +H +I K G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFS 516
           L  +  +GT+L+ +Y   G   +A++VF     K V SW AL++ +   G     + ++ 
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120

Query: 517 EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576
            M+  G++ N+ T   V+  C  +     G++    +I+ + LE N      ++ + G  
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGYF 179

Query: 577 GMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           G ++EA  +   M    D  +W +++ A  ++G
Sbjct: 180 GSVEEACYVFSGMD-EHDTISWNSMIAAYIRNG 211


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 342/606 (56%), Gaps = 42/606 (6%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVC--GDLSAARKLFDESPVLDLVSWNSI 203
           S+ + K I   ++  G   D + ++ LI   A+    DL     +   +   +  SWN  
Sbjct: 18  SISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVA 77

Query: 204 LAGYVNADNVEEAKFIYNKM-------PER------------------------------ 226
           + G+++++N  EA  +Y ++       P+                               
Sbjct: 78  IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLG 137

Query: 227 ---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
              +I  SN++I L    G++  A ++F +   +DLVSW+++I+ Y +     EAL  + 
Sbjct: 138 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYR 197

Query: 284 NMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCG 343
            M    +  DEV ++ V+S+CA L  +  G   H    + G++  + L NAL+ MY  CG
Sbjct: 198 EMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCG 257

Query: 344 EITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQ 403
            + +A KLFD+  N  ++SW +M+ GY + G ++ A  LFD M +KDVV W+ MI GY  
Sbjct: 258 NLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVH 317

Query: 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463
            ++  E L+LF EMQ   I PDE T+VS +SAC+ L ALD G WIH YI K+ L +N  L
Sbjct: 318 ANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 377

Query: 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523
           GT LIDMY K G +  A++VF     +   +W A+I G A++G A  ++  FSEM  + V
Sbjct: 378 GTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSV 437

Query: 524 TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583
            P+E+TF+G+L AC H GLV+EG ++F+ M  +  L P  KHY CMVDLLGRAG+L+EAE
Sbjct: 438 MPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAE 497

Query: 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643
           ELI+SMP+  D   WGAL  AC+ HG+  MGER   KL+++ P   G +VLL+N++    
Sbjct: 498 ELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAE 557

Query: 644 RWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703
            W +  + R +M +RGV K PGCS IE NGI++EF+  D++HPQ  +I   L ++ ++L+
Sbjct: 558 MWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLE 617

Query: 704 LEGYAP 709
           L    P
Sbjct: 618 LVECTP 623



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 186/669 (27%), Positives = 291/669 (43%), Gaps = 150/669 (22%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           L+KC+S  Q  QI SQM+LTGLI D FA+SRLI F   +  + ++ Y   I     +PN 
Sbjct: 13  LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCA-ISEWRDLDYCTNILFNTRNPNT 71

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQASALRLSVFE-GKLIH 154
           F +N  +R ++    P++A+ LYK +L  +    DNYTYPLL +A A RLS+   G  I 
Sbjct: 72  FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACA-RLSLIRMGSEIL 130

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
            HVL  GFDSD++V+N +I++   CGDL  ARK+FD+S V DLVSWNS++ GYV      
Sbjct: 131 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAY 190

Query: 215 EAKFIYNKM------PER---------------------------------NIIASNSMI 235
           EA   Y +M      P+                                   +  +N+++
Sbjct: 191 EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 250

Query: 236 VLFGRKGNVAEACRLF-------------------------------KEMPKKDLVSWSA 264
            ++ + GN+  A +LF                                EMP KD+V W+A
Sbjct: 251 DMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 310

Query: 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324
           +I  Y      +EAL LF  M    +  DEV +VS LSAC+ L  +  G  +H    K  
Sbjct: 311 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 370

Query: 325 IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384
           +   + L  ALI MY+ CG+IT A ++F      + ++W ++ISG    G+   A A F 
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430

Query: 385 AMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444
            MI+  V+                               PDE T + ++SAC H   +++
Sbjct: 431 EMIDNSVM-------------------------------PDEVTFLGLLSACCHGGLVEE 459

Query: 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
           G+    Y  +   K N                               +  ++ ++     
Sbjct: 460 GR---KYFSQMSSKFNL---------------------------SPKLKHYSCMVDLLGR 489

Query: 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NS 563
            GL +++ E+   M    +  + + +  +  ACR  G V  G R  + ++Q   ++P +S
Sbjct: 490 AGLLEEAEELIKSMP---IEADAVVWGALFFACRIHGNVLMGERAASKLLQ---MDPHDS 543

Query: 564 KHYGCMVDLLGRAGMLKEA--------EELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
             Y  + ++ G A M KEA        +  +E  P    +   G +     +   H   E
Sbjct: 544 GIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSE 603

Query: 616 RVGRKLVEL 624
           ++   L++L
Sbjct: 604 QIYECLIQL 612


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 322/567 (56%), Gaps = 31/567 (5%)

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
             +I LF + G V  A  LF E+ KKDL+S +A+IS +  N   E+++ LF  ++     
Sbjct: 70  TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER 129

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           V    +V ++   +          +H   VK+GI  + ++  AL  +Y            
Sbjct: 130 VSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR---------- 179

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                       N MI           AR LFD   EK + SW+ MISG  Q+      +
Sbjct: 180 -----------LNEMIF----------ARQLFDESAEKTLASWNAMISGCTQNGLTDAAI 218

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
           SLF  MQ + + P+  T+ S++SAC  + AL  G+W+H+ I+ N  + N  + T LIDMY
Sbjct: 219 SLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMY 278

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            K G +  A E+F    EK   +WNA+I G+ ++G   ++L++F +M  S V P  +TF+
Sbjct: 279 AKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFL 338

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL AC H GLV EG   F++M+ +   EP ++HY CMVD+LGRAG LK+A E I++MP+
Sbjct: 339 SVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPV 398

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P    WGALLGAC  H D  +      KL EL P++ G++VL+SNI++ + ++     V
Sbjct: 399 EPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASV 458

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +  ++ + K PGC++IE   + H F +GD++HPQ   I   LD++  K+   G+  +T
Sbjct: 459 RQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTET 518

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+++EEKE T+  HSEKLAIAFGLI+  P   IRI+KNLR+C DCH   KF+S+ 
Sbjct: 519 TTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKI 578

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
             R IVVRD +RFHHFK G CSC D+W
Sbjct: 579 TKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 193/444 (43%), Gaps = 81/444 (18%)

Query: 102 MMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYT----YPLLAQASALRLSVFEGKLIHDH 156
           M+  +++ +  + +I ++  ++L N    D  T     P +A+   L+L    G  I   
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKL----GMQILCL 56

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
            +K GF S V +   LI++++ CG++  AR LF E    DL+S N++++G+      E++
Sbjct: 57  AIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDS 116

Query: 217 KFIYNKMPERNIIASNSMIV---------------------------------------L 237
             ++ ++       S+S IV                                       +
Sbjct: 117 VRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTV 176

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV 297
           + R   +  A +LF E  +K L SW+A+IS   QN + + A+ LF  M  + V  + V V
Sbjct: 177 YCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTV 236

Query: 298 VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN 357
            S+LSACA +  +  G  VH+L      E  + +  ALI MY+ CG IT A +LFD    
Sbjct: 237 TSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPE 296

Query: 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEM 417
            + ++WN+MISGY                             G   H Q  E L LF +M
Sbjct: 297 KNEVTWNAMISGY-----------------------------GLHGHGQ--EALKLFYDM 325

Query: 418 QHHGIRPDEATLVSVISACTHLVALDQGKWI-HAYIRKNGLKINSILGTTLIDMYMKLGC 476
               ++P   T +SV+ AC+H   + +G  I H  +   G +  +     ++D+  + G 
Sbjct: 326 LSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQ 385

Query: 477 VDNALEVFHGTE-EKGVSSWNALI 499
           +  ALE       E G   W AL+
Sbjct: 386 LKKALEFIKAMPVEPGPPVWGALL 409



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 151/373 (40%), Gaps = 44/373 (11%)

Query: 22  PIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEM 81
           P F  T  +++L   + + Q  K   QIL   I  G  +     + LI   +      E+
Sbjct: 27  PRFDLTTVIAVLPA-VAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCG---EV 82

Query: 82  SYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141
             +  +F  +   +    N M+  +      + ++ L+K +L++   V + T   L    
Sbjct: 83  EIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVY 142

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWN 201
           +     +    IH   +K G  S   V+  L  +Y    ++  AR+LFDES    L SWN
Sbjct: 143 SPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWN 202

Query: 202 SILAGYVNADNVEEAKFIYNKMP------------------------------------- 224
           ++++G       + A  ++  M                                      
Sbjct: 203 AMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSN 262

Query: 225 --ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
             E N+  S ++I ++ + G++  A  LF  MP+K+ V+W+A+IS Y  +   +EAL LF
Sbjct: 263 RFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLF 322

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV-HALAVKIGIECYINLQNALIHMYSS 341
            +M+   V    +  +SVL AC++  +VK G  + H +    G E        ++ +   
Sbjct: 323 YDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGR 382

Query: 342 CGEITTAEKLFDA 354
            G++  A +   A
Sbjct: 383 AGQLKKALEFIKA 395


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/751 (31%), Positives = 389/751 (51%), Gaps = 74/751 (9%)

Query: 89  AFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF 148
           A   SP+ F+ N ++R +    +P+ A+  Y+ ML      D +T+P++ +  A   ++ 
Sbjct: 65  AVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALE 124

Query: 149 EGKLIHDHVLKAGF-DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGY 207
           EG+  H   ++ G   S+VY  N+L+  YA  G ++ A ++FD  PV D+V+WNS++ GY
Sbjct: 125 EGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGY 184

Query: 208 ---------------------VNADNV-------------------EEAKFIYNKMPERN 227
                                V  D V                   E   ++     E++
Sbjct: 185 VSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQD 244

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           +    S++ ++ + G +A A  +F  MP + +V+W+ +I  Y  N   EEA   F+ M  
Sbjct: 245 VKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKA 304

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347
               V+ V  +++L+ACA       G SVH    +     ++ L+ AL+ MYS  G++ +
Sbjct: 305 EGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKS 364

Query: 348 AEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF 407
           +E                                +F  M  K +VSW+ MI+ Y   + +
Sbjct: 365 SE-------------------------------TIFGQMTNKTLVSWNNMIAAYMYKEMY 393

Query: 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467
           +E ++LF+E+ +  + PD  T+ +V+ A   L  L Q + +H+YI +     N+++   +
Sbjct: 394 NEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAV 453

Query: 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527
           + MY + G V ++ ++F     K V SWN +I+G+A++G    +LEMFSEMK +G+ PNE
Sbjct: 454 MHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNE 513

Query: 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIE 587
            TFV VL AC   G+ DEG   FN M +++ + P  +HYGCM DLLGRAG L+E  + IE
Sbjct: 514 STFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIE 573

Query: 588 SMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647
           S+P++P    WG+LL A +   D ++ E    ++ EL+ D+ G +V+LS+++A  GRW+D
Sbjct: 574 SIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRWED 633

Query: 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707
           V  +R  M+ +G+ +    S++E +G    F+ GD THPQ   I  + D +++K+    Y
Sbjct: 634 VQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDVLSRKIGETDY 693

Query: 708 APDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKF 767
            P  L     +    +     +HS +LA+ FGLI+     PI + KN+RICN CH A K 
Sbjct: 694 -PRNLSDPISL-TSRRTIIPNKHSVRLAVVFGLISSEARAPILVKKNVRICNHCHHALKL 751

Query: 768 ISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           IS+   R IVV D + +H F  GSC C D+W
Sbjct: 752 ISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 232/512 (45%), Gaps = 45/512 (8%)

Query: 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCG----DLSAARKLFDESPVLDL 197
           +L LS      +HD +       D +++N +I  +A  G     L+A R +       D 
Sbjct: 48  SLVLSHAAAGRMHDALAAVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDR 107

Query: 198 VSWNSILAGYVNADNVEEAKFIYNKMPERNIIAS-----NSMIVLFGRKGNVAEACRLFK 252
            ++  ++        +EE +  ++      ++ S     NS++  + + G VA+A R+F 
Sbjct: 108 FTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFD 167

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVK 311
            MP +D+V+W++++  Y  N +   AL  F  M +  +V  D V +++ L+AC   + + 
Sbjct: 168 GMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALM 227

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G  VHA  ++ G+E  + +  +L+ MY                                
Sbjct: 228 QGREVHAYVIRHGLEQDVKVGTSLLDMYC------------------------------- 256

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
           KCG++  A  +F  M  + VV+W+ MI GYA +    E    F++M+  G + +  T ++
Sbjct: 257 KCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAIN 316

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491
           +++AC    +   G+ +H Y+ ++    + +L T L++MY K+G V ++  +F     K 
Sbjct: 317 LLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKT 376

Query: 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551
           + SWN +I  +    + ++++ +F E+    + P+  T   V+ A   +GL+ +  R  +
Sbjct: 377 LVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQC-RQMH 435

Query: 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDH 611
           S I       N+     ++ +  R G +  + ++ + M    DV +W  ++     HG  
Sbjct: 436 SYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMA-GKDVISWNTIIMGYAIHGQG 494

Query: 612 EMGERVGRKLVE--LQPDHDGFHVLLSNIHAS 641
           ++   +  ++    LQP+   F  +L+    S
Sbjct: 495 KIALEMFSEMKSNGLQPNESTFVSVLTACSVS 526



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 114/258 (44%), Gaps = 39/258 (15%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +FA + S     +N M+  Y     P++A   +  M      V+  T   L  A A   S
Sbjct: 267 MFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTES 326

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
              G+ +H +V ++ F   V +   L+ MY+  G + ++  +F +     LVSWN+++A 
Sbjct: 327 SLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAA 386

Query: 207 YVNADNVEEAKFIYNKM------PE---------------------------------RN 227
           Y+  +   EA  ++ ++      P+                                  N
Sbjct: 387 YMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGEN 446

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
            + +N+++ ++ R G+V  + ++F +M  KD++SW+ +I  Y  +   + AL +F  M  
Sbjct: 447 TLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKS 506

Query: 288 HRVMVDEVVVVSVLSACA 305
           + +  +E   VSVL+AC+
Sbjct: 507 NGLQPNESTFVSVLTACS 524



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 82/153 (53%)

Query: 84  SFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143
           S  IF  + +     +N M+ AY+ + +  +AI L+  +LN  +  D +T   +  A  L
Sbjct: 365 SETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVL 424

Query: 144 RLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI 203
              + + + +H ++++  +  +  V N +++MYA CGD+ ++RK+FD+    D++SWN+I
Sbjct: 425 LGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTI 484

Query: 204 LAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236
           + GY      + A  ++++M    +  + S  V
Sbjct: 485 IMGYAIHGQGKIALEMFSEMKSNGLQPNESTFV 517


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/591 (38%), Positives = 342/591 (57%), Gaps = 53/591 (8%)

Query: 226 RNIIASNSMIVLFGRKGNVAE------ACRLFKEMPKKDLVSWSALI-SCYEQNEMYEEA 278
           RN    NS + L+ R  +V+       ACR+F ++   +   W+ LI +C    +  E+A
Sbjct: 50  RNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQA 109

Query: 279 LVLFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337
           + +F  M++   V  D+     +L ACA +  +  G   HA                   
Sbjct: 110 IEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHA------------------- 150

Query: 338 MYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTM 397
                       ++F  G +LD+   NS+I  Y  CG +  A  +F+ M  + +VSW+ M
Sbjct: 151 ------------QIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVM 198

Query: 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG- 456
           I  Y Q   F   L LF+EMQ+    PD  T+ S++SAC  + AL  G W HAY+ +   
Sbjct: 199 IDAYVQSGLFENALKLFVEMQN-SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKAS 257

Query: 457 --LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEM 514
             +  + ++ ++L+DMY K G +  A +VF    +  ++SWN++I+  AM+G    +L+ 
Sbjct: 258 GAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQC 317

Query: 515 FS---EMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           FS   EM+K    PN +TFVGVL AC H G+V +G ++F+ M+ ++++EP  +HYGC+VD
Sbjct: 318 FSRLVEMEK--FLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVD 375

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGAC-KKHGDHEMGERVGRKLVELQPD-HD 629
           LL R+G + EA EL+ +M + PD   W +LL AC K++   E+ E V  K+++ +     
Sbjct: 376 LLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISS 435

Query: 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQIN 689
           G +V+LS ++AS  +W+DV  +R +M   GV K PGCS IE +GI HEF AGD +HP+I 
Sbjct: 436 GVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIK 495

Query: 690 EIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEE--KETTLFRHSEKLAIAFGLITISPPN 747
           EI  ++D + +KL+  GY+PD  +    +D+ +  K+ +L  HSE+LAIAFGL+ + P  
Sbjct: 496 EIYGVIDLIEEKLERRGYSPDCSQATM-VDEPDNIKQQSLKLHSERLAIAFGLLNLKPGT 554

Query: 748 PIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           P+RI KNLR+CNDCH   K IS  F+ EI++RDR+RFHHFKHG CSCMDFW
Sbjct: 555 PVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 182/384 (47%), Gaps = 52/384 (13%)

Query: 37  LQKCQSFKQFTQILSQMI--LTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           L  C    +  QI +Q I   +   +  F  SR++  S+     I+  Y+ ++F  +++P
Sbjct: 32  LTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSS----LIDFDYACRVFNQIDNP 87

Query: 95  NGFIFNTMMRAYIQR-NVPQQAI-CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           N F++NT++ A  +  +  +QAI   Y+++   +V  D +T+P L +A A   ++ EG+ 
Sbjct: 88  NSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQ 147

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADN 212
            H  + K G D DVYV N+LI++YA CG LS A K+F++ P+  LVSWN ++  YV +  
Sbjct: 148 AHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGL 207

Query: 213 VEEAKFIYNKMPER-----------------------------------------NIIAS 231
            E A  ++ +M                                            +++ +
Sbjct: 208 FENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLIN 267

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRV 290
           +S++ ++ + G++  A ++F+ MPK DL SW+++I     +   + AL  F  +++  + 
Sbjct: 268 SSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKF 327

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVK-IGIECYINLQNALIHMYSSCGEITTAE 349
           + + V  V VLSAC +  +V  G     + V    IE  +     L+ + S  G I  A 
Sbjct: 328 LPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEAL 387

Query: 350 KLFDAGH-NLDLISWNSMISGYLK 372
           +L    H   D + W S++    K
Sbjct: 388 ELVANMHIKPDAVIWRSLLDACYK 411



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 164/324 (50%), Gaps = 17/324 (5%)

Query: 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD------AGHNLDLISWNSM- 366
           T+  +L ++I  E     Q+  +H+ + C +++  +++        + HN  L  ++ + 
Sbjct: 7   TNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRIL 66

Query: 367 -ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH-DQFSETLSLFMEMQHHG-IR 423
            +S  +     + A  +F+ +   +   W+T+I   A+  D+  + + +F  M   G + 
Sbjct: 67  HVSSLI---DFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVE 123

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD+ T   ++ AC ++ AL +G+  HA I K GL ++  +G +LI +Y   GC+  AL+V
Sbjct: 124 PDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKV 183

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           F     + + SWN +I  +  +GL + +L++F EM+ S   P+  T   ++ AC  +G +
Sbjct: 184 FEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNS-FEPDGYTMQSIVSACAGIGAL 242

Query: 544 DEGHRHFNSMIQEHR--LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGAL 601
             G      ++++    +  +      +VD+  + G L+ A+++ E+MP   D+ +W ++
Sbjct: 243 SLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSM 301

Query: 602 LGACKKHGDHEMGERVGRKLVELQ 625
           + A   HG  +   +   +LVE++
Sbjct: 302 ILALAMHGRGQAALQCFSRLVEME 325


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 361/627 (57%), Gaps = 58/627 (9%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEM 254
           ++N+IL   VN     E + ++  M +   + S      +IVL+ +  ++ +A  +F EM
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304

Query: 255 PKKDLVSWSALISCYEQNEMYEEALVLFMNMID-----------------HRVMV----D 293
           P++++VSW+A+IS Y Q     +AL LF   +                  +R  V    +
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
           E    +VL++C +      G  +H+L +K+  E ++ + ++L+ MY+             
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYA------------- 411

Query: 354 AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL 413
                             K G + +AR +F+ + E+DVVS + +ISGYAQ     E L L
Sbjct: 412 ------------------KDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALEL 453

Query: 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473
           F  +Q  G++ +  T   V++A + L ALD GK +H ++ ++ +    +L  +LIDMY K
Sbjct: 454 FRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSK 513

Query: 474 LGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVG 532
            G +  +  +F    E+ V SWNA+++G++ +G   + L++F+ M++ + V P+ +T + 
Sbjct: 514 CGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILA 573

Query: 533 VLGACRHMGLVDEGHRHFNSMIQ-EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
           VL  C H GL D+G   FN M   +  +EP  +HYGC+VDLLGR+G ++EA E I+ MP 
Sbjct: 574 VLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPF 633

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            P  A WG+LLGAC+ H + ++GE  G++L+E++P + G +V+LSN++AS GRW+DV  +
Sbjct: 634 EPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSL 693

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R +M+++ V K PG S IE + ++H F A DR+HP+  EI   + E++   K  GY PD 
Sbjct: 694 RDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDL 753

Query: 712 LEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRA 771
             V  D+D+E+KE  L  HSEKLA++FGLI      PIR++KNLRIC DCH  AK+IS+ 
Sbjct: 754 SCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKV 813

Query: 772 FDREIVVRDRHRFHHFKHGSCSCMDFW 798
           + RE+ +RD++RFH    G CSC D+W
Sbjct: 814 YGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 172/426 (40%), Gaps = 94/426 (22%)

Query: 41  QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100
           ++F++  ++ + MI T  +   F  +RLI   T       +  +  +F  +   N   + 
Sbjct: 257 RAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKC---DSLGDAHNVFDEMPERNVVSWT 313

Query: 101 TMMRAYIQRNVPQQAICLY----KLMLNNNVGVDN-----------------YTYPLLAQ 139
            M+ AY QR    QA+ L+    K+ L     +D                  +T+  +  
Sbjct: 314 AMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLT 373

Query: 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS 199
           +    L    G+ IH  ++K  ++  V+V ++L++MYA  G +  AR +F+  P  D+VS
Sbjct: 374 SCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVS 433

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERN-------------------------------- 227
             +I++GY      EEA  ++ ++                                    
Sbjct: 434 CTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVL 493

Query: 228 -------IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                  ++  NS+I ++ + GN+  + R+F  M ++ ++SW+A++  Y ++    E L 
Sbjct: 494 RSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLK 553

Query: 281 LFMNMIDH-RVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
           LF  M +  +V  D V +++VLS C++  +   G               +N+ N +    
Sbjct: 554 LFTLMREETKVKPDSVTILAVLSGCSHGGLEDKG---------------LNIFNDM---- 594

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM-IEKDVVSWSTMI 398
            S G+I    K+   G  +DL+          + G VE+A      M  E     W +++
Sbjct: 595 -SSGKIEVEPKMEHYGCVVDLLG---------RSGRVEEAFEFIKKMPFEPTAAIWGSLL 644

Query: 399 SGYAQH 404
                H
Sbjct: 645 GACRVH 650



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 28/251 (11%)

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           S S  +S +  H    + L   ++M  HG         ++++ C +  A  +G+ +HA++
Sbjct: 213 SNSRTLSTFTTHIHLQQPL---LQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHM 269

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512
            K     +  L T LI +Y K   + +A  VF    E+ V SW A+I  ++  G A ++L
Sbjct: 270 IKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQAL 329

Query: 513 EMFSEMKKSGVT---------------------PNEITFVGVLGAC-RHMGLVDEGHRHF 550
            +F    K  +T                     PNE TF  VL +C   +G +    R  
Sbjct: 330 NLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFI--LGRQI 387

Query: 551 NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGD 610
           +S+I +   E +      ++D+  + G + EA  + E +P   DV +  A++    + G 
Sbjct: 388 HSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLP-ERDVVSCTAIISGYAQLGL 446

Query: 611 HEMGERVGRKL 621
            E    + R+L
Sbjct: 447 DEEALELFRRL 457


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 323/552 (58%), Gaps = 33/552 (5%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           +LF  MP +D+VSW+ +I+   QN MYEEAL +   M    +  D   + S+L       
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            V  G  +H  A++ G +  + + ++LI MY+                            
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYA---------------------------- 245

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
              KC  VE +   F  +  +D +SW+++I+G  Q+ +F + L  F  M    ++P + +
Sbjct: 246 ---KCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVS 302

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             SVI AC HL AL+ GK +HAYI + G   N  + ++L+DMY K G +  A  +F+  E
Sbjct: 303 FSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIE 362

Query: 489 --EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             ++ + SW A+I+G AM+G A  ++ +F EM   GV P  + F+ VL AC H GLVDEG
Sbjct: 363 MCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG 422

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
            ++FNSM ++  + P  +HY  + DLLGRAG L+EA + I +M   P  + W  LL AC+
Sbjct: 423 WKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR 482

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            H + E+ E+V  K++ + P + G HV++SNI+++  RW D  ++R  M + G+ K P C
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           S IE    +H FLAGD++HP  ++I+  L+ + ++++ EGY  DT EV  D+D+E K   
Sbjct: 543 SWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDL 602

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSE+LAIAFG+I+ +    IR++KN+R+C DCHTA KF+++   REI+VRD  RFHH
Sbjct: 603 LRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHH 662

Query: 787 FKHGSCSCMDFW 798
           FK+GSCSC D+W
Sbjct: 663 FKNGSCSCGDYW 674



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 176/367 (47%), Gaps = 15/367 (4%)

Query: 245 AEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304
           A+  +  K  P    ++W  +I CY  + +   +L  F  +    +  D  +  S+L A 
Sbjct: 29  AQIVKTTKATPHS--LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRAS 86

Query: 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC-GEITTAEKLFDAGHNLDLISW 363
                     S+HA  +++G    +   NAL++MYS     ++   +   A HN      
Sbjct: 87  TLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHN-----H 141

Query: 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIR 423
           N+  S       ++  R LFD M  +DVVSW+T+I+G AQ+  + E L++  EM    +R
Sbjct: 142 NNKYSV-----KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLR 196

Query: 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483
           PD  TL S++   T    + +GK IH Y  ++G   +  +G++LIDMY K   V+ ++  
Sbjct: 197 PDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCA 256

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           FH    +   SWN++I G   NG  D+ L  F  M K  V P +++F  V+ AC H+  +
Sbjct: 257 FHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTAL 316

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SPDVATWGALL 602
           + G +  ++ I     + N      ++D+  + G +K A  +   + M   D+ +W A++
Sbjct: 317 NLG-KQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAII 375

Query: 603 GACKKHG 609
             C  HG
Sbjct: 376 MGCAMHG 382



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 202/472 (42%), Gaps = 96/472 (20%)

Query: 93  SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152
           +P+   +  +++ Y    + + ++  + L+ +  +  D + +P L +AS L       + 
Sbjct: 38  TPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQS 97

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYA----------------------VCGDLSAARKLFD 190
           +H  V++ GF  D+Y  N L+NMY+                          + + RKLFD
Sbjct: 98  LHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFD 157

Query: 191 ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI----IASNSMIVLFGRKGNVAE 246
             PV D+VSWN+++AG       EEA  +  +M + N+       +S++ +F    NV +
Sbjct: 158 RMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTK 217

Query: 247 ACRL-----------------------------------FKEMPKKDLVSWSALISCYEQ 271
              +                                   F  +  +D +SW+++I+   Q
Sbjct: 218 GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQ 277

Query: 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331
           N  +++ L  F  M+  +V   +V   SV+ ACA+LT +  G  +HA  +++G +    +
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFI 337

Query: 332 QNALIHMYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389
            ++L+ MY+ CG I  A  +F+     + D++SW ++I G   C                
Sbjct: 338 ASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMG---C---------------- 378

Query: 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG-KWI 448
                       A H    + +SLF EM   G++P     ++V++AC+H   +D+G K+ 
Sbjct: 379 ------------AMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYF 426

Query: 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALI 499
           ++  R  G+         + D+  + G ++ A +      EE   S W+ L+
Sbjct: 427 NSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLL 478



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 121/543 (22%), Positives = 218/543 (40%), Gaps = 94/543 (17%)

Query: 21  KPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLI----KFSTDLL 76
           + +F   +  S L  H    QS        + +I  G   D + A+ L+    KF   L 
Sbjct: 76  RHLFPSLLRASTLFKHFNLAQSLH------AAVIRLGFHFDLYTANALMNMYSKFHPHLS 129

Query: 77  PFIEM---------SYSFKI------FAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKL 121
           P  E           YS KI      F  +   +   +NT++    Q  + ++A+ + K 
Sbjct: 130 PLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKE 189

Query: 122 MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
           M   N+  D++T   +        +V +GK IH + ++ GFD DV++ ++LI+MYA C  
Sbjct: 190 MGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQ 249

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--------------- 226
           +  +   F      D +SWNSI+AG V     ++    + +M +                
Sbjct: 250 VELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPA 309

Query: 227 ------------------------NIIASNSMIVLFGRKGNVAEACRLFK--EMPKKDLV 260
                                   N   ++S++ ++ + GN+  A  +F   EM  +D+V
Sbjct: 310 CAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMV 369

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG-----TS 315
           SW+A+I     +    +A+ LF  M+   V    V  ++VL+AC++  +V  G     + 
Sbjct: 370 SWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSM 429

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
                V  G+E Y  + + L       G     E+ +D   N+      S+ S  L    
Sbjct: 430 QRDFGVAPGLEHYAAVADLL-------GRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR 482

Query: 376 VEKARALFDAMIEK-------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA- 427
             K   L + ++ K       ++ +   M + Y+   ++ +   L + M+  G++   A 
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542

Query: 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
           + + V +     +A D+    H Y      KIN  L   L++   K G V +  EV H  
Sbjct: 543 SWIEVGNKVHTFLAGDKS---HPYYD----KINEAL-NILLEQMEKEGYVLDTNEVLHDV 594

Query: 488 EEK 490
           +E+
Sbjct: 595 DEE 597


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/773 (32%), Positives = 382/773 (49%), Gaps = 106/773 (13%)

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA-------------- 142
           F  N ++ AY++    + A+ L+  M   N    N ++  LAQ  A              
Sbjct: 85  FATNILLNAYVKAGFDKDALNLFDEMPERN----NVSFVTLAQGYACQDPIGLYSRLHRE 140

Query: 143 ---LRLSVFEGKL--------------IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAA 185
              L   VF   L              +H  ++K G+DS+ +V   LIN Y+VCG + +A
Sbjct: 141 GHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSA 200

Query: 186 RKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN------------- 232
           R +F+     D+V W  I++ YV     E++  + + M     + +N             
Sbjct: 201 RTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGL 260

Query: 233 --------------------------SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALI 266
                                      ++ L+ + G++++A ++F EMPK D+V WS +I
Sbjct: 261 GAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMI 320

Query: 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326
           + + QN    EA+ LF+ M +  V+ +E  + S+L+ CA       G  +H L VK+G +
Sbjct: 321 ARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFD 380

Query: 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386
             I + NALI +                               Y KC  ++ A  LF  +
Sbjct: 381 LDIYVSNALIDV-------------------------------YAKCEKMDTAVKLFAEL 409

Query: 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446
             K+ VSW+T+I GY    +  +  S+F E   + +   E T  S + AC  L ++D G 
Sbjct: 410 SSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV 469

Query: 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506
            +H    K        +  +LIDMY K G +  A  VF+  E   V+SWNALI G++ +G
Sbjct: 470 QVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHG 529

Query: 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566
           L  ++L +   MK     PN +TF+GVL  C + GL+D+G   F SMI++H +EP  +HY
Sbjct: 530 LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHY 589

Query: 567 GCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626
            CMV LLGR+G L +A +LIE +P  P V  W A+L A     + E   R   +++++ P
Sbjct: 590 TCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINP 649

Query: 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHP 686
             +  +VL+SN++A   +W +V  +R  M   GV K PG S IE  G +H F  G   HP
Sbjct: 650 KDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHP 709

Query: 687 QINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITI-SP 745
            +  I+ ML+ +  K    GY PD   V  D+D EEK+  L+ HSE+LA+A+GL+ + S 
Sbjct: 710 DMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSS 769

Query: 746 PNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            N I IMKNLRIC+DCH+A K IS    R++V+RD +RFHHF  G CSC D W
Sbjct: 770 RNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 164/349 (46%), Gaps = 39/349 (11%)

Query: 193 PVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER----NIIASNSMIVLFGRKGNVAEAC 248
           P LD  ++ ++L   +  ++   AK I+  + ++    ++ A+N ++  + + G   +A 
Sbjct: 45  PGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDAL 104

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
            LF EMP+++ VS+  L   Y      ++ + L+  +      ++  V  S L    +L 
Sbjct: 105 NLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLD 160

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
             +    +H+  VK+G +    +  ALI+ YS C                          
Sbjct: 161 KAEICPWLHSPIVKLGYDSNAFVGAALINAYSVC-------------------------- 194

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEAT 428
                GSV+ AR +F+ ++ KD+V W+ ++S Y ++  F ++L L   M+  G  P+  T
Sbjct: 195 -----GSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYT 249

Query: 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488
             + + A   L A D  K +H  I K    ++  +G  L+ +Y +LG + +A +VF+   
Sbjct: 250 FDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309

Query: 489 EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           +  V  W+ +I  F  NG  ++++++F  M+++ V PNE T   +L  C
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 185/418 (44%), Gaps = 47/418 (11%)

Query: 52  QMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNV 111
           Q++ T  + D      L++  T L    +MS +FK+F  +   +   ++ M+  + Q   
Sbjct: 272 QILKTCYVLDPRVGVGLLQLYTQLG---DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328

Query: 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171
             +A+ L+  M    V  + +T   +    A+      G+ +H  V+K GFD D+YV+N 
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNA 388

Query: 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE------ 225
           LI++YA C  +  A KLF E    + VSWN+++ GY N     +A  ++ +         
Sbjct: 389 LIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVT 448

Query: 226 ---------------------------------RNIIASNSMIVLFGRKGNVAEACRLFK 252
                                            + +  SNS+I ++ + G++  A  +F 
Sbjct: 449 EVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFN 508

Query: 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312
           EM   D+ SW+ALIS Y  + +  +AL +   M D     + +  + VLS C+N  ++  
Sbjct: 509 EMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQ 568

Query: 313 GTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDA-GHNLDLISWNSMISGY 370
           G       ++  GIE  +     ++ +    G++  A KL +   +   ++ W +M+S  
Sbjct: 569 GQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSAS 628

Query: 371 LKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425
           +   + E AR   + +++   KD  ++  + + YA   Q++   S+   M+  G++ +
Sbjct: 629 MNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKE 686



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 8/260 (3%)

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +   G  LDL + N +++ Y+K G  + A  LFD M E++ VS+ T+  GYA  D     
Sbjct: 75  ILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQD----P 130

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + L+  +   G   +     S +     L   +   W+H+ I K G   N+ +G  LI+ 
Sbjct: 131 IGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINA 190

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y   G VD+A  VF G   K +  W  ++  +  NG  + SL++ S M+ +G  PN  TF
Sbjct: 191 YSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTF 250

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
              L A   +G  D        +++  + L+P       ++ L  + G + +A ++   M
Sbjct: 251 DTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG--LLQLYTQLGDMSDAFKVFNEM 308

Query: 590 PMSPDVATWGALLGACKKHG 609
           P + DV  W  ++    ++G
Sbjct: 309 PKN-DVVPWSFMIARFCQNG 327



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 7/192 (3%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIE-MSYSFKIFAFLESPN 95
           + KC    +  Q+   ++  G   D + ++ LI    D+    E M  + K+FA L S N
Sbjct: 360 IGKCSGLGE--QLHGLVVKVGFDLDIYVSNALI----DVYAKCEKMDTAVKLFAELSSKN 413

Query: 96  GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHD 155
              +NT++  Y       +A  +++  L N V V   T+     A A   S+  G  +H 
Sbjct: 414 EVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHG 473

Query: 156 HVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215
             +K      V V+N+LI+MYA CGD+  A+ +F+E   +D+ SWN++++GY       +
Sbjct: 474 LAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 216 AKFIYNKMPERN 227
           A  I + M +R+
Sbjct: 534 ALRILDIMKDRD 545


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 333/600 (55%), Gaps = 31/600 (5%)

Query: 199 SWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258
           +W+ ++  Y     + +AK ++++M  +N++  N+MI    R   V EA  +F+ M  +D
Sbjct: 186 TWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRD 245

Query: 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318
            ++W+ +++   QN +  EAL +F  M    V +D+    S+L+AC  L   + G  +HA
Sbjct: 246 SITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 305

Query: 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEK 378
             ++   +  I + +AL+ MYS                               KC S+  
Sbjct: 306 YTIRTLYDGNIFVGSALVDMYS-------------------------------KCRSIRL 334

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438
           A A+F  M  K+++SW+ MI GY Q+    E + +F EMQ  GI+P++ TL SVIS+C +
Sbjct: 335 AEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCAN 394

Query: 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL 498
           L +L++G   H     +GL+    + + L+ +Y K G +++A  +F         S+ AL
Sbjct: 395 LASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTAL 454

Query: 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558
           + G+A  G A +++++F +M   GV PN +TF+GVL AC   GLV++G  +F+SM Q+H 
Sbjct: 455 VSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHG 514

Query: 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVG 618
           +     HY CM+DL  R+G LKEAEE I  MP  PD   W  LL AC+  GD E+G+   
Sbjct: 515 IVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAA 574

Query: 619 RKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678
             L++  P +   +VLL ++HASKG W +V  +R  M  R V K PGCS I+    +H F
Sbjct: 575 ENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIF 634

Query: 679 LAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAF 738
            A D++HP    I   L  +  K+  EGY PD   V  D+   EK   L  HSEKLAIAF
Sbjct: 635 SADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAF 694

Query: 739 GLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           GLI +    PIR++KNLR+C DCH A KFIS+   R+I+VRD  RFH F +G CSC DFW
Sbjct: 695 GLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 232/444 (52%), Gaps = 26/444 (5%)

Query: 166 VYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE 225
            YV N L+  YA  G L  AR+LFD  P  +L + N++L+   +A  + +   ++  MP+
Sbjct: 45  TYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQ 104

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
           R+ ++ N++I  F   G  A A   ++ +                   + EEA+V     
Sbjct: 105 RDAVSYNALIAGFSGAGAPARAAGAYRAL-------------------LREEAVV----- 140

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
              RV    + +  ++ A + L     G  VH   +++G   Y    + L+ MY+  G I
Sbjct: 141 DGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLI 200

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
             A+++FD     +++ +N+MI+G L+C  VE+AR +F+AM+++D ++W+TM++G  Q+ 
Sbjct: 201 GDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNG 260

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
             SE L +F  M+  G+  D+ T  S+++AC  L A ++GK IHAY  +     N  +G+
Sbjct: 261 LQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGS 320

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
            L+DMY K   +  A  VF     K + SW A+I+G+  NG  ++++ +FSEM+  G+ P
Sbjct: 321 ALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKP 380

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N+ T   V+ +C ++  ++EG + F+ M     L P       +V L G+ G +++A  L
Sbjct: 381 NDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRL 439

Query: 586 IESMPMSPDVATWGALLGACKKHG 609
            + MP   D  ++ AL+    + G
Sbjct: 440 FDEMPFH-DQVSYTALVSGYAQFG 462



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 173/383 (45%), Gaps = 44/383 (11%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   +   + TM+    Q  +  +A+ +++ M    VG+D YT+  +  A     +
Sbjct: 237 VFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 296

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
             EGK IH + ++  +D +++V + L++MY+ C  +  A  +F      +++SW +++ G
Sbjct: 297 SEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVG 356

Query: 207 YVNADNVEEAKFIYNKMPERN--------------------------------------- 227
           Y      EEA  ++++M                                           
Sbjct: 357 YGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPY 416

Query: 228 IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287
           I  S++++ L+G+ G++ +A RLF EMP  D VS++AL+S Y Q    +E + LF  M+ 
Sbjct: 417 ITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLL 476

Query: 288 HRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHMYSSCGEIT 346
             V  + V  + VLSAC+   +V+ G S  H++    GI    +    +I +YS  G + 
Sbjct: 477 KGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLK 536

Query: 347 TAEKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYA 402
            AE+         D I W +++S     G +E  +   + +++ D     S+  + S +A
Sbjct: 537 EAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHA 596

Query: 403 QHDQFSETLSLFMEMQHHGIRPD 425
              ++SE   L   M+   ++ +
Sbjct: 597 SKGEWSEVALLRRGMRDRQVKKE 619


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 386/718 (53%), Gaps = 46/718 (6%)

Query: 81   MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
            M ++ K+F  +   N   +  ++  + +    +    L++ M       + YT   L + 
Sbjct: 340  MDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKC 399

Query: 141  SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
             +L +++  GK +H  +L+ G D+DV + N+++++Y  C       K+F           
Sbjct: 400  CSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKC-------KVF----------- 441

Query: 201  NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                         E A+ ++  M E ++++ N MI  + R G+V ++  +F+ +P KD+V
Sbjct: 442  -------------EYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVV 488

Query: 261  SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
            SW+ ++    Q     +AL     M++       V     L   ++L++V+ G  +H + 
Sbjct: 489  SWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMV 548

Query: 321  VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            +K G      ++++L+ MY  CG +  A            I    +   +LK G+     
Sbjct: 549  LKFGFCRDGFIRSSLVEMYCKCGRMDNAS-----------IVLKDVPLDFLKNGNA---- 593

Query: 381  ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
             +    ++  +VSW  M+SGY  + ++ + L  F  M    +  D  T+ ++ISAC +  
Sbjct: 594  GVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 441  ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
             L+ G+ +HAY  K G +I++ +G++LIDMY K G +D+A  +F  T E  +  W ++I 
Sbjct: 654  ILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMIS 713

Query: 501  GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560
            G A++G   +++ +F EM   G+ PNE+TF+GVL AC H GL++EG R+F  M   + + 
Sbjct: 714  GCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCIN 773

Query: 561  PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620
            P  +H   MVDL GRAG L E +  I    +S   + W + L +C+ H + EMG+ V   
Sbjct: 774  PGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEM 833

Query: 621  LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLA 680
            L+++ P   G +VLLSN+ AS  RWD+   VR +M +RG+ K PG S I+    IH F+ 
Sbjct: 834  LLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIM 893

Query: 681  GDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGL 740
            GDR+HPQ  EI + LD +  +LK  GY+ D   V  D+++E+ E  +  HSEKLA+ FG+
Sbjct: 894  GDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGI 953

Query: 741  ITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            I  +   PIRI+KNLRIC DCH   K+ S+  DREI++RD HRFHHFKHG CSC D+W
Sbjct: 954  INTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 189/397 (47%), Gaps = 20/397 (5%)

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
           ++N ++ L+ +  N+  A +LF E+P+++  +W+ LIS + +    E    LF  M    
Sbjct: 326 SANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKG 385

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              ++  + S+   C+    ++ G  VHA  ++ GI+  + L N+++ +Y  C     AE
Sbjct: 386 ACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAE 445

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++F+  +  D++SWN MIS YL+ G VEK+  +F  +  KDVVSW+T++ G  Q     +
Sbjct: 446 RVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQ 505

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            L     M   G      T    +   + L  ++ G+ +H  + K G   +  + ++L++
Sbjct: 506 ALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVE 565

Query: 470 MYMKLGCVDNALEVFHGTE----------------EKGVSSWNALIIGFAMNGLADKSLE 513
           MY K G +DNA  V                     + G+ SW  ++ G+  NG  +  L+
Sbjct: 566 MYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLK 625

Query: 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG-HRHFNSMIQEHRLEPNSKHYGCMVDL 572
            F  M +  V  +  T   ++ AC + G+++ G H H  +    HR++        ++D+
Sbjct: 626 TFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVG--SSLIDM 683

Query: 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             ++G L +A  +       P++  W +++  C  HG
Sbjct: 684 YSKSGSLDDAWTIFRQTN-EPNIVFWTSMISGCALHG 719



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 207/490 (42%), Gaps = 99/490 (20%)

Query: 31  SILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAF 90
           SIL+ +L KC+ F+   ++   M    +++     S  ++         ++  S  +F  
Sbjct: 430 SILDLYL-KCKVFEYAERVFELMNEGDVVSWNIMISAYLRAG-------DVEKSLDMFRR 481

Query: 91  LESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEG 150
           L   +   +NT++   +Q    +QA+     M+         T+ +    S+    V  G
Sbjct: 482 LPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELG 541

Query: 151 KLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           + +H  VLK GF  D ++ ++L+ MY  CG +  A  +  + P LD              
Sbjct: 542 RQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVP-LD-------------- 586

Query: 211 DNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYE 270
                                      F + GN    C   KE+ K  +VSW  ++S Y 
Sbjct: 587 ---------------------------FLKNGNAGVTC---KEL-KAGIVSWGLMVSGYV 615

Query: 271 QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG--IECY 328
            N  YE+ L  F  M+   V+VD   V +++SACAN  +++ G  VHA   KIG  I+ Y
Sbjct: 616 WNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAY 675

Query: 329 INLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388
           +   ++LI MYS  G +  A  +F   +  +++ W SMISG   C               
Sbjct: 676 VG--SSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISG---C--------------- 715

Query: 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448
                        A H Q  + + LF EM + GI P+E T + V++AC H   L++G   
Sbjct: 716 -------------ALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGC-- 760

Query: 449 HAYIR--KNGLKINSIL--GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAM 504
             Y R  K+   IN  +   T+++D+Y + G   +  E  +   E G+S   ++   F  
Sbjct: 761 -RYFRMMKDAYCINPGVEHCTSMVDLYGRAG---HLTETKNFIFENGISHLTSVWKSFLS 816

Query: 505 NGLADKSLEM 514
           +    K++EM
Sbjct: 817 SCRLHKNVEM 826



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 97/170 (57%), Gaps = 1/170 (0%)

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
           L S N +++ Y+K  +++ AR LFD + +++  +W+ +ISG+++         LF EM+ 
Sbjct: 324 LNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRA 383

Query: 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479
            G  P++ TL S+   C+  + L  GK +HA++ +NG+  + +LG +++D+Y+K    + 
Sbjct: 384 KGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEY 443

Query: 480 ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTPNEI 528
           A  VF    E  V SWN +I  +   G  +KSL+MF  +  K  V+ N I
Sbjct: 444 AERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTI 493


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 327/572 (57%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   +S++ L+ R G + +A ++F  MP++D V+WS +++ +       +A+ ++  M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  DEVV++ V+ AC     V+ G SVH                             
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHG---------------------------- 233

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
               L   G  +D+++  S++  Y K G ++ A  +F  M+ ++ VSWS MISG+AQ+ Q
Sbjct: 234 ---HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF  MQ  GI+PD   LVS + AC+++  L  G+ +H +I +     N ILGT 
Sbjct: 291 SDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTA 349

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            IDMY K G + +A  +F+   ++ +  WNA+I     +G    +L +F EM ++G+ P+
Sbjct: 350 AIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD 409

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF  +L A  H GLV+EG   F  M+   ++ P  KHY C+VDLL R+G+++EA +L+
Sbjct: 410 HATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            SM   P VA W ALL  C  +   E+GE +   ++ELQPD  G   L+SN++A+  +WD
Sbjct: 470 TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWD 529

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V +VR +M   G  K+PGCS IE  G  H F+  D++HPQ  EI + + ++  +++  G
Sbjct: 530 KVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMG 589

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y P T  V  D+++E KE  L  HSE+LAIAFGL+   P   + I+KNLR+C DCH A K
Sbjct: 590 YIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIK 649

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +IS+  DREIVVRD  RFHHFK G CSC D+W
Sbjct: 650 YISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 211/451 (46%), Gaps = 84/451 (18%)

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +R  P  A+ +++  L      D+ T+ L   A A    +  G+ + D    AG+  DV+
Sbjct: 86  RRGSPASALRVFR-ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-- 225
           V ++L+++YA  G +  A K+F   P  D V+W++++AG+V+A    +A  +Y +M E  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 226 ------------------RN-------------------IIASNSMIVLFGRKGNVAEAC 248
                             RN                   ++ + S++ ++ + G +  AC
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+F  M  ++ VSWSA+IS + QN   +EAL LF NM    +  D   +VS L AC+N+ 
Sbjct: 265 RVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 309 VVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
            +K G SVH   V +    C   L  A I MYS CG + +A+ LF+   + DLI WN+MI
Sbjct: 325 FLKLGRSVHGFIVRRFDFNCI--LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +    CG+                            H +  + L+LF EM   G+RPD A
Sbjct: 383 AC---CGA----------------------------HGRGQDALTLFQEMNETGMRPDHA 411

Query: 428 TLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVF 484
           T  S++SA +H   +++GK W    +  N  KI         L+D+  + G V+ A ++ 
Sbjct: 412 TFASLLSALSHSGLVEEGKLWFGRMV--NHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 485 HGTE-EKGVSSWNALIIGFAMNGLADKSLEM 514
              + E  V+ W AL+ G     L +K LE+
Sbjct: 470 TSMKAEPTVAIWVALLSGC----LNNKKLEL 496



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 171/351 (48%), Gaps = 36/351 (10%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D       LSACA L  ++ G SV                                ++ F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVR-------------------------------DRAF 135

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           DAG+  D+   +S++  Y + G++  A  +F  M  +D V+WSTM++G+    Q  + + 
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQ 195

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           ++  M+  G++ DE  ++ VI ACT    +  G  +H ++ ++G++++ +  T+L+DMY 
Sbjct: 196 MYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYA 255

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D A  VF     +   SW+A+I GFA NG +D++L +F  M+ SG+ P+    V 
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            L AC ++G +  G      +++  R + N       +D+  + G L  A+ L  +M   
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVR--RFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISD 372

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS 641
            D+  W A++  C  HG  +    + +++ E  ++PDH  F  LLS +  S
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 151/352 (42%), Gaps = 48/352 (13%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + K+F  +   +   ++TM+  ++    P  AI +Y+ M  + V  D      + QA
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
                +V  G  +H H+L+ G   DV    +L++MYA  G L  A ++F      + VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PER---------------------------- 226
           +++++G+      +EA  ++  M      P+                             
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 227 ----NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282
               N I   + I ++ + G++A A  LF  +  +DL+ W+A+I+C   +   ++AL LF
Sbjct: 339 RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLF 398

Query: 283 MNMIDHRVMVDEVVVVSVLSACANLTVVKAGT-----SVHALAVKIGIECYINLQNALIH 337
             M +  +  D     S+LSA ++  +V+ G       V+   +    + Y+     L+ 
Sbjct: 399 QEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYV----CLVD 454

Query: 338 MYSSCGEITTAEKLFDAGHNLDLIS-WNSMISGYLKCGSVEKARALFDAMIE 388
           + +  G +  A  L  +      ++ W +++SG L    +E   ++ D ++E
Sbjct: 455 LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILE 506



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 23/247 (9%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RPD  T    +SAC  L  L  G+ +       G K +  + ++L+ +Y + G + +A++
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR---- 538
           VF     +   +W+ ++ GF   G    +++M+  M++ GV  +E+  +GV+ AC     
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 539 -HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             MG    GH      +  H +  +      +VD+  + G+L  A  +   M    DV +
Sbjct: 225 VRMGASVHGH------LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV-S 277

Query: 598 WGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL---SNIHASK-GRWDDVLEV 651
           W A++    ++G  +   R+ R +    +QPD       L   SNI   K GR      V
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR-----SV 332

Query: 652 RGMMVRR 658
            G +VRR
Sbjct: 333 HGFIVRR 339


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/782 (31%), Positives = 416/782 (53%), Gaps = 64/782 (8%)

Query: 27   TINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFK 86
            T+N S   T  ++C +    TQ+ + + +TGL     A+++LI+    +  F     S +
Sbjct: 345  TLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIF---ESSKR 401

Query: 87   IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY-KLMLNNNVGVDNYTYPLLAQASAL-- 143
            +F     P+ F++  +++ Y+     ++A+ LY +++  +   + N+ +P + +A +   
Sbjct: 402  VFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFG 461

Query: 144  RLSV-------FEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLD 196
             LSV        EG  +   ++    + D   + T++++   C +L + R        L 
Sbjct: 462  DLSVGGKNGQASEGLDMFSQMISEAVEPD---SVTMLSVTEACSELGSLRL-----GRLG 513

Query: 197  LVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256
             V     + G+V    ++         PE + +   +++ L+   GN+ +  ++F+ + +
Sbjct: 514  RVKEGRSVHGFVIRRAMD---------PELDFLGP-ALMELYADTGNLRDCHKVFETIKE 563

Query: 257  KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316
            K ++SW+ LIS + +N   EEAL+LF+ M    +M D   + S LSAC  ++  + G  +
Sbjct: 564  KTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI 623

Query: 317  HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSV 376
            H   +K G                                N +    N++I  Y KCG V
Sbjct: 624  HGYIIKTG--------------------------------NFNDFVQNALIDMYAKCGFV 651

Query: 377  EKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436
              A  +F+ + EK +V+W++MI G++Q+    E ++LF +M  + ++ D+ T +SVI AC
Sbjct: 652  HSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQAC 711

Query: 437  THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWN 496
            +HL  L++GKW+H  +   GL+ +S L T L DMY K G +  A  VF    E+ + SW+
Sbjct: 712  SHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWS 771

Query: 497  ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556
             +I G+ M+G  + ++ +F++M  SG+ PN+ITF+ +L AC H G V+EG  +FNSM  E
Sbjct: 772  VMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SE 830

Query: 557  HRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616
              +EP   H+ CMVDLL RAG L  A ++I S+P   + + WGALL  C+ H   ++ + 
Sbjct: 831  FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKS 890

Query: 617  VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676
            + + L+++     G++ LLSNI+A +G WD   +VR MM  +G+ K+PG S IE +  I+
Sbjct: 891  IEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIY 950

Query: 677  EFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAI 736
             F  GD +H Q  +I   L+     +  + Y  +         +  KE  +  HSEKLAI
Sbjct: 951  RFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAI 1010

Query: 737  AFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796
            AFG+I   P   +RI KNLR+C DCH+ AK  S+   REI++RD +RFH F++GSCSC D
Sbjct: 1011 AFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCND 1070

Query: 797  FW 798
            +W
Sbjct: 1071 YW 1072


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 355/643 (55%), Gaps = 45/643 (6%)

Query: 169 NNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNI 228
           ++ LI M    G L+ A  L    P     ++ S+L     A +   A  ++ ++    +
Sbjct: 220 DDHLIQMLCAHGRLAQATALLQGLPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPV 279

Query: 229 IASNS-----MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283
             S+      +I  +     +  A ++F E P K++  W+A++      +  EEAL    
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339

Query: 284 NMIDHRVMVDEVVVVSVLSAC--ANLTVVKAGTSV---HALAVKIGIECYINLQNALIHM 338
           +M    V VD       L AC  A+ + + A   V   HA A++ G   + ++   LI  
Sbjct: 340 DMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDC 399

Query: 339 YSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398
           Y+                               K G V  A  +F +M ++++VSWS MI
Sbjct: 400 YA-------------------------------KLGIVSYAERVFTSMPDRNLVSWSAMI 428

Query: 399 SGYAQHDQFSETLSLFMEM--QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG 456
             YA++++  + + +F EM      + P+  T+VSV+ AC  + AL QGK +HAYI + G
Sbjct: 429 GCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRG 488

Query: 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGT-EEKGVSSWNALIIGFAMNGLADKSLEMF 515
             +   +   L+ MYMK GC++    +F+     + V SWN+LI G+ M+G   +SL++F
Sbjct: 489 FDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVF 548

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
            EM + G++PN ITFV VLGAC H+GLV++G + F SM+ E+ + P ++HY CMVDLLGR
Sbjct: 549 EEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGR 607

Query: 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635
           AG L EA ELI+SM + P    WG+LLGAC+ HG  E  E     L +L+P + G +VLL
Sbjct: 608 AGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLL 667

Query: 636 SNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNML 695
           ++I+A     + V  ++ ++    + K+PGCS IE    ++ F++ D  +PQ+ E+  ++
Sbjct: 668 ADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALI 727

Query: 696 DEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNL 755
            E   ++K EGY PDT  V +DI++EEKE  L  HSEKLA+AFGLI       IRI KNL
Sbjct: 728 GEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNL 787

Query: 756 RICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           R+C DCH+  KFIS+  DREIVVRD +RFHHF++G CSC D+W
Sbjct: 788 RLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 205/476 (43%), Gaps = 120/476 (25%)

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA----- 216
           F SD +++  LI  YA    L AAR++FDE+PV ++  WN++L     AD+ EEA     
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339

Query: 217 ----------KFIYNKMPERNIIASNS-----------------------------MIVL 237
                      + Y    +  I AS S                             +I  
Sbjct: 340 DMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDC 399

Query: 238 FGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI--DHRVMVDEV 295
           + + G V+ A R+F  MP ++LVSWSA+I CY +NE   +A+ +F  M+  D  ++ + +
Sbjct: 400 YAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSI 459

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD-A 354
            +VSVL ACA +  +  G  +HA  ++ G +  +++ NAL+ MY  CG + T   +F+  
Sbjct: 460 TIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWI 519

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
           G   +++SWNS+ISG                               Y  H    E+L +F
Sbjct: 520 GRRRNVVSWNSLISG-------------------------------YGMHGFGRESLQVF 548

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            EM   GI P+  T VSV+ AC+H+  ++QGK +   + +  +   +     ++D+  + 
Sbjct: 549 EEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRA 608

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +D A+E+                                       + P+   +  +L
Sbjct: 609 GRLDEAVELIQSMR----------------------------------IQPSPQVWGSLL 634

Query: 535 GACRHMGLVDEGHRHFNSMIQEH--RLEP-NSKHYGCMVDLLGRAGMLKEAEELIE 587
           GACR       GH  +  M   H   LEP N+ +Y  + D+  RA +  + + L E
Sbjct: 635 GACR-----IHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKE 685



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 158/369 (42%), Gaps = 53/369 (14%)

Query: 60  ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLY 119
           +D F ++RLI+    L     +  + ++F      N F++N M++A    +  ++A+   
Sbjct: 282 SDPFLSTRLIEAYAAL---SALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCL 338

Query: 120 KLMLNNNVGVDNYTYP------LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLI 173
             M    V VD+Y+Y       + A AS L  S    + +H H ++ G+    +V  TLI
Sbjct: 339 ADMGRLGVPVDSYSYAHGLKACIAASASHLPASA-RVREMHAHAIRRGYGLHTHVATTLI 397

Query: 174 NMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM--------PE 225
           + YA  G +S A ++F   P  +LVSW++++  Y   +   +A  I+ +M        P 
Sbjct: 398 DCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPN 457

Query: 226 RNIIAS---------------------------------NSMIVLFGRKGNVAEACRLFK 252
              I S                                 N+++ ++ + G +     +F 
Sbjct: 458 SITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFN 517

Query: 253 EM-PKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
            +  ++++VSW++LIS Y  +    E+L +F  MI+  +  + +  VSVL AC+++ +V+
Sbjct: 518 WIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVE 577

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH-NLDLISWNSMISGY 370
            G  +    V+  +         ++ +    G +  A +L  +         W S++   
Sbjct: 578 QGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGAC 637

Query: 371 LKCGSVEKA 379
              G VE A
Sbjct: 638 RIHGHVEYA 646


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 336/588 (57%), Gaps = 36/588 (6%)

Query: 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIAS----NSMIVLFGRKGNVAEACRLFKEMP 255
           +++ +     + N+++A+ I+  +            NS+I L+ + G+V EA ++F +M 
Sbjct: 54  YHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 256 KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS 315
            KD+VSW++LI+ Y QN+M  EA+ L   M+  R   +     S+L A         G  
Sbjct: 114 NKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQ 173

Query: 316 VHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375
           +HALAVK      + + +AL+ MY+                               +CG 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYA-------------------------------RCGK 202

Query: 376 VEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435
           ++ A A+FD +  K+ VSW+ +ISG+A+       L +F EMQ +G      T  S+ SA
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSA 262

Query: 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSW 495
              + AL+QGKW+HA++ K+  K+ + +G T++DMY K G + +A +VF     K + +W
Sbjct: 263 LAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555
           N+++  FA  GL  +++  F EM+KSG+  N+I+F+ +L AC H GLV EG +H+  MI+
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEG-KHYFDMIK 381

Query: 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615
           E+ LEP  +HY  +VDLLGRAG+L  A   I  MPM P  A WGALL AC+ H + ++G+
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGII 675
                + +L PD  G  VLL NI+AS G WD    VR MM   GV K P CS +E    +
Sbjct: 442 FAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSV 501

Query: 676 HEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLA 735
           H F+A D THP+  EI  M DE++ K++ EGY PD   V   +D++E+E  L  HSEK+A
Sbjct: 502 HMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIA 561

Query: 736 IAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHR 783
           +AF LI +     IRIMKN+RIC DCH+A K+IS+ F+REIV+   H+
Sbjct: 562 LAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVIIHLHK 609



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 180/413 (43%), Gaps = 71/413 (17%)

Query: 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDES 192
            Y     A A   ++ + + IH H+  + F  D +++N+LI++Y  CG +  A K+FD+ 
Sbjct: 53  VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 193 PVLDLVSWNSILAGYVNADNVEEA----------KFIYNKMP------------------ 224
              D+VSW S++AGY   D   EA          +F  N                     
Sbjct: 113 RNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGG 172

Query: 225 -----------ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNE 273
                        ++   ++++ ++ R G +  A  +F ++  K+ VSW+ALIS + +  
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 274 MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333
             E AL++F  M  +          S+ SA A +  ++ G  VHA  +K   +    + N
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGN 292

Query: 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVS 393
            ++ MY+  G +  A K+F+   N DL++WNS                            
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNS---------------------------- 324

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
              M++ +AQ+    E +S F EM+  GI  ++ + + +++AC+H   + +GK     I+
Sbjct: 325 ---MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIK 381

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALE-VFHGTEEKGVSSWNALIIGFAMN 505
           +  L+       T++D+  + G ++ AL  +F    E   + W AL+    M+
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 155/353 (43%), Gaps = 42/353 (11%)

Query: 35  THLQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP 94
           T   + ++     +I + +  +    D F  + LI         +E   + K+F  + + 
Sbjct: 59  TACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVE---AHKVFDKMRNK 115

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           +   + +++  Y Q ++P +AI L   ML      + +T+  L +A         G  IH
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIH 175

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVE 214
              +K  +  DVYV + L++MYA CG +  A  +FD+    + VSWN++++G+    + E
Sbjct: 176 ALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
            A  ++ +M      A+                                       N+M+
Sbjct: 236 TALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTML 295

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G++ +A ++F+ +  KDLV+W+++++ + Q  + +EA+  F  M    + ++++
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
             + +L+AC++  +VK G     +  +  +E  I     ++ +    G +  A
Sbjct: 356 SFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 24/238 (10%)

Query: 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
           + P      + I+AC     LD  + IHA++  +    ++ L  +LI +Y K G V  A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL---GACR 538
           +VF     K + SW +LI G+A N +  +++ +   M K    PN  TF  +L   GA  
Sbjct: 107 KVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYA 166

Query: 539 HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW 598
             G+  + H    ++  +     +      ++D+  R G +  A  + + +  S +  +W
Sbjct: 167 DSGIGGQIH----ALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSW 221

Query: 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHAS--------KGRW 645
            AL+    + GD E    V     E+Q   +GF   H   S+I ++        +G+W
Sbjct: 222 NALISGFARKGDGETALMV---FAEMQ--RNGFEATHFTYSSIFSALAGIGALEQGKW 274


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/760 (31%), Positives = 399/760 (52%), Gaps = 77/760 (10%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           M  + ++F  +   + F++N M++ +    +  +A+  Y  M+   V  D +TYP + ++
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   S+ EGK IH  V+K GF SDVYV N+LI++Y   G    A K+F+E P  D+VSW
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199

Query: 201 NSILAGYVNADNVEEAKFIYNKM------PER---------------------------- 226
           NS+++GY+   +   +  ++ +M      P+R                            
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259

Query: 227 ------NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280
                 +++   S++ ++ + G V+ A R+F  M ++++V+W+ +I CY +N    +A +
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFL 319

Query: 281 LFMNMIDHRVMVDEVVV-VSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            F  M +   +  +V+  +++L A A L     G ++H  A++ G   ++ L+ ALI MY
Sbjct: 320 CFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMY 375

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
             CG+                               ++ A  +FD M EK+V+SW+++I+
Sbjct: 376 GECGQ-------------------------------LKSAEVIFDRMAEKNVISWNSIIA 404

Query: 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459
            Y Q+ +    L LF E+    + PD  T+ S++ A    ++L +G+ IHAYI K+    
Sbjct: 405 AYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWS 464

Query: 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK 519
           N+I+  +L+ MY   G +++A + F+    K V SWN++I+ +A++G    S+ +FSEM 
Sbjct: 465 NTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMI 524

Query: 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579
            S V PN+ TF  +L AC   G+VDEG  +F SM +E+ ++P  +HYGCM+DL+GR G  
Sbjct: 525 ASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNF 584

Query: 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639
             A+  +E MP  P    WG+LL A + H D  + E    ++ +++ D+ G +VLL N++
Sbjct: 585 SAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMY 644

Query: 640 ASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMA 699
           A  GRW+DV  ++ +M  +G+ +    S +EA G  H F  GDR+H   N+I  +LD ++
Sbjct: 645 AEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVS 704

Query: 700 KKLKLEG-YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
           + +  E  Y      +  +   + +  +  RHS +LA  FGLI+      + +  N RIC
Sbjct: 705 RMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRIC 764

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
             CH   +  SR   REIVV D   FHHF +G CSC ++W
Sbjct: 765 RKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 19/303 (6%)

Query: 367 ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
           + G+     +E A  LFD M + D   W+ MI G+     + E +  +  M   G++ D 
Sbjct: 71  LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T   VI +   + +L++GK IHA + K G   +  +  +LI +YMKLGC  +A +VF  
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             E+ + SWN++I G+   G    SL +F EM K G  P+  + +  LGAC H+     G
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMG 250

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
                  ++      +      ++D+  + G +  AE +   M +  ++  W  ++G   
Sbjct: 251 KEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAWNVMIGCYA 309

Query: 607 KHGD--------HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
           ++G          +M E+ G     LQPD      LL      +GR      + G  +RR
Sbjct: 310 RNGRVTDAFLCFQKMSEQNG-----LQPDVITSINLLPASAILEGR-----TIHGYAMRR 359

Query: 659 GVV 661
           G +
Sbjct: 360 GFL 362



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 139/315 (44%), Gaps = 45/315 (14%)

Query: 80  EMSYSFKIFAFLESPNGFIFNTMMRAYIQR-NVPQQAICLYKLMLNNNVGVDNYTYPLLA 138
           E+SY+ +IF  +   N   +N M+  Y +   V    +C  K+   N +  D  T   L 
Sbjct: 282 EVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLL 341

Query: 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLV 198
            ASA    + EG+ IH + ++ GF   + +   LI+MY  CG L +A  +FD     +++
Sbjct: 342 PASA----ILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVI 397

Query: 199 SWNSILAGYVNADNVEEAKFIYNKM------PERNIIAS--------------------- 231
           SWNSI+A YV       A  ++ ++      P+   IAS                     
Sbjct: 398 SWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYI 457

Query: 232 ------------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
                       NS++ ++   G++ +A + F  +  KD+VSW+++I  Y  +     ++
Sbjct: 458 VKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISV 517

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTS-VHALAVKIGIECYINLQNALIHM 338
            LF  MI  RV  ++    S+L+AC+   +V  G     ++  + GI+  I     ++ +
Sbjct: 518 WLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDL 577

Query: 339 YSSCGEITTAEKLFD 353
               G  + A++  +
Sbjct: 578 IGRTGNFSAAKRFLE 592


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/552 (39%), Positives = 313/552 (56%), Gaps = 33/552 (5%)

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           RLF  +    +  ++A++  Y  +    E L ++ +M    V  D +     + +C  L 
Sbjct: 82  RLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLL 141

Query: 309 VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368
            +  G  +HA                               ++F  GH  D +   SM+ 
Sbjct: 142 SLLFGIQIHA-------------------------------RIFINGHQADSLLLTSMMD 170

Query: 369 GYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH--HGIRPDE 426
            Y  CG  E+A  LFD + +KDVV+W+ +IS   ++ +  + L LF  MQ   +  +PD+
Sbjct: 171 LYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDK 230

Query: 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
            T + ++ AC  L AL+ G+ IH YI+++G    S L  +LI MY + G +D A EVF  
Sbjct: 231 VTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDK 290

Query: 487 TEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546
             EK V SW+A+I G +MNG   +++E F EM+K+GV P + TF  VL AC H GLVDEG
Sbjct: 291 MTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEG 350

Query: 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACK 606
              F+ M QE  + PN  HYGC+VDLLGRAGML +A ELI SM + PD   W  LLGAC+
Sbjct: 351 MAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACR 410

Query: 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666
            HG   +GER+   L+EL+    G +VLL NI++S G WD V E+R +M  +G+   P C
Sbjct: 411 IHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCC 470

Query: 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETT 726
           + IE NG++H+F   D +HP  ++I   LDE+ K+LK+ GY  +       ++ ++K   
Sbjct: 471 TTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYA 530

Query: 727 LFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHH 786
           L  HSEKLAIAFG++   P   IRI  N+R C DCH  AK+IS  ++R++VVRDR RFHH
Sbjct: 531 LSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHH 590

Query: 787 FKHGSCSCMDFW 798
           F+ G CSC DFW
Sbjct: 591 FQEGRCSCNDFW 602



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 127/526 (24%), Positives = 215/526 (40%), Gaps = 123/526 (23%)

Query: 153 IHDHVLKAGFDSDVYVNNTLINMYAVCG--DLSAARKLFDESPVLDLVSWNSILAGYVNA 210
           IH H++      D  V+   +   A     DL  +R+LFD      +  +N++L  Y  +
Sbjct: 46  IHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLS 105

Query: 211 DNVEEAKFIYNKMPERNIIAS--------------------------------------- 231
            +  E  ++Y  M  + + A                                        
Sbjct: 106 RSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLL 165

Query: 232 NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF--MNMIDHR 289
            SM+ L+   G   EAC+LF E+P+KD+V+W+ LISC  +N+   +AL LF  M    + 
Sbjct: 166 TSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYL 225

Query: 290 VMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349
              D+V  + +L ACA+L  ++ G  +H    + G     NL N+LI MYS CG +  A 
Sbjct: 226 CQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAY 285

Query: 350 KLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409
           ++FD     +++SW++MISG                            ++G+ +     E
Sbjct: 286 EVFDKMTEKNVVSWSAMISG--------------------------LSMNGHGR-----E 314

Query: 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469
            +  F EMQ +G+ P + T  +V+SAC+H   +D+G      +R+  +   ++       
Sbjct: 315 AIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNV------- 367

Query: 470 MYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529
                GC+ +                   ++G A  G+ D++ E+   M+   V P+   
Sbjct: 368 --HHYGCIVD-------------------LLGRA--GMLDQAYELIMSME---VRPDATM 401

Query: 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL---GRAGMLKEAEEL- 585
           +  +LGACR       GH +    I EH +E  S+  G  V LL     AG   +  EL 
Sbjct: 402 WRTLLGACR-----IHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELR 456

Query: 586 -------IESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL 624
                  I + P    +   G +         H M +++ ++L E+
Sbjct: 457 KLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEI 502



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 42/318 (13%)

Query: 37  LQKCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNG 96
           ++ C    Q  QI + +I T  I D   + R +   T   PF ++ YS ++F  L +P  
Sbjct: 34  IKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLT-RTASAPFRDLGYSRRLFDLLTNPFV 92

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156
             +N M+RAY     P + + +Y+ M    V  D  +     ++    LS+  G  IH  
Sbjct: 93  SHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHAR 152

Query: 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA 216
           +   G  +D  +  +++++Y+ CG    A KLFDE P  D+V+WN +++         +A
Sbjct: 153 IFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDA 212

Query: 217 KFIYNKMPERNIIAS-----------------------------------------NSMI 235
             ++  M     +                                           NS+I
Sbjct: 213 LGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLI 272

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ R G + +A  +F +M +K++VSWSA+IS    N    EA+  F  M  + V   + 
Sbjct: 273 SMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDH 332

Query: 296 VVVSVLSACANLTVVKAG 313
              +VLSAC++  +V  G
Sbjct: 333 TFTAVLSACSHCGLVDEG 350


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/761 (33%), Positives = 390/761 (51%), Gaps = 85/761 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +N M+ AY Q++  +QAI ++  ML   V  +  T+  +  A +   
Sbjct: 156 KVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLK 215

Query: 146 SVFEGKLI--------HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD------- 190
            +   KL+        HDH+  + F +       L+N Y  CGDL  A + F        
Sbjct: 216 DLEVAKLVKLCVEEREHDHLHDSSFAT------ALVNFYGSCGDLEQAFRAFSRHRLELI 269

Query: 191 ---------------------------ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
                                      E   LD ++  ++L        +EE + I+  M
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFM 329

Query: 224 PE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
            E    R++ A N++I ++G+ G++ EA  +F+ M  +D++SW+ +I+ + Q+  + EAL
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEAL 389

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            L   M    V  D++  V+ L  CA    +  G  +H+  V+ GI+  + L NA++ MY
Sbjct: 390 HLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMY 449

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
            S                               C S + A  +F AM  +D VSW+ MI+
Sbjct: 450 GS-------------------------------CKSTDDASRVFRAMKARDQVSWNAMIT 478

Query: 400 GYAQHDQFS-ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            YA   + S E L LF +MQ HG  PD  + V+ +SAC    +L +GK +H  IR+ GL+
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLE 538

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            N  +   +++MY K G +  A ++F       V SWN +I  FA +G AD+ L  F  M
Sbjct: 539 SNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVDLLGRAG 577
              G  PN++TFV V+ AC H GLV +G + F S++ +   + P ++HY CMVDL+ RAG
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L  AE+ I + P+ PD      +LGA K H D E   +    L+EL PD    +V+LSN
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++   G+ D+  ++R +M  + + K P  S I     +HEF  GD T+ +  EI   L+ 
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           ++ ++   GY PDT  +  D+  E+K+  L  HSEKLAIAFGLI+ +P   +RI+KNLR+
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRV 838

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCHTA KFIS+   REIVVRD HRFHHF +G+CSC D+W
Sbjct: 839 CGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 155/602 (25%), Positives = 278/602 (46%), Gaps = 80/602 (13%)

Query: 63  FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           F    L++   D    I+    F     +   +   +  ++RA+ Q    +QA+ L++ M
Sbjct: 34  FMGDLLVRMYVDCGSLIDAKACFD---RMPVQDALTWARLIRAHGQIGDSEQALHLFRSM 90

Query: 123 LNNNVGVDNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
               V   N  +  +L   SA    + EG+ IH  +     +SD YV+ TL++MY  C  
Sbjct: 91  QLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSS 150

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA----------- 230
           +  ARK+FD      +V WN+++  Y   D+ E+A  ++  M    + A           
Sbjct: 151 VEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDA 210

Query: 231 ------------------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                         + +++  +G  G++ +A R F    + +L+
Sbjct: 211 CSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRH-RLELI 269

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
             +A+I+ Y Q E ++EAL LF  M+   V +D +  ++VL+AC+    ++ G  +H   
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFM 329

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            +I  + ++N  NALI+MY  CG +  A ++F +  + D+ISWN                
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWN---------------- 373

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                          T+I+ + QH Q  E L L   MQ  G++ D+ + V+ +  C    
Sbjct: 374 ---------------TIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASE 418

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL +G+ IH++I ++G+K + +L   ++DMY      D+A  VF   + +   SWNA+I 
Sbjct: 419 ALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMIT 478

Query: 501 GFAMNG-LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            +A    L+ ++L +F +M+  G  P+ I+FV  L AC     + EG +  +  I+E  L
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGL 537

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           E N      ++++  ++G L  A ++   MP+ PDV +W  ++ A  +HG  +   R  R
Sbjct: 538 ESNMTVANAVLNMYAKSGSLVLARKMFGKMPL-PDVISWNGMISAFAQHGHADQVLRFFR 596

Query: 620 KL 621
           ++
Sbjct: 597 RM 598



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 32/239 (13%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L   A+   +  G  VHA   K  ++    + + L+ MY  CG +  A+  FD     D
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQD 63

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
            ++W  +I  + + G  E+A                               L LF  MQ 
Sbjct: 64  ALTWARLIRAHGQIGDSEQA-------------------------------LHLFRSMQL 92

Query: 420 HGIRPDEATLVSVISACT-HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
            G+ P     V+V+ AC+     L++G+ IH  +R   ++ +  + TTL+ MY K   V+
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           +A +VF G   K V  WNA+I  +A     ++++++F  M   GV    ITF+GVL AC
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDAC 211



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +LD GK +HA I K+ +     +G  L+ MY+  G + +A   F     +   +W  LI 
Sbjct: 13  SLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIR 72

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR-HMGLVDEGHRHFNSMIQEHRL 559
                G ++++L +F  M+  GV P    FV VLGAC     L++EG R  + +++   +
Sbjct: 73  AHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEG-RRIHGVLRGTAM 131

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
           E +      ++ + G+   +++A ++ + +     V  W A++ A  +   HE   +V
Sbjct: 132 ESDHYVSTTLLHMYGKCSSVEDARKVFDGI-RHKRVVEWNAMITAYAQQDHHEQAIQV 188


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 327/572 (57%), Gaps = 32/572 (5%)

Query: 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMI 286
           ++   +S++ L+ R G + +A ++F  MP++D V+WS +++ +       +A+ ++  M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 287 DHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEIT 346
           +  V  DEVV++ V+ AC     V+ G SVH                             
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHG---------------------------- 233

Query: 347 TAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406
               L   G  +D+++  S++  Y K G ++ A  +F  M+ ++ VSWS MISG+AQ+ Q
Sbjct: 234 ---HLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQ 290

Query: 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466
             E L LF  MQ  GI+PD   LVS + AC+++  L  G+ +H +I +     N ILGT 
Sbjct: 291 SDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTA 349

Query: 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526
            IDMY K G + +A  +F+   ++ +  WNA+I     +G    +L +F EM ++G+ P+
Sbjct: 350 AIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD 409

Query: 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586
             TF  +L A  H GLV+EG   F  M+   ++ P  KHY C+VDLL R+G+++EA +L+
Sbjct: 410 HATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 587 ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646
            SM   P VA W ALL  C  +   E+GE +   ++ELQPD  G   L+SN++A+  +WD
Sbjct: 470 TSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWD 529

Query: 647 DVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEG 706
            V +VR +M   G  K+PGCS IE  G  H F+  D++HPQ  EI + + ++  +++  G
Sbjct: 530 KVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMG 589

Query: 707 YAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAK 766
           Y P T  V  D+++E KE  L  HSE+LAIAFGL+   P   + I+KNLR+C DCH A K
Sbjct: 590 YIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIK 649

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +IS+  DREIVVRD  RFHHFK G CSC D+W
Sbjct: 650 YISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 211/451 (46%), Gaps = 84/451 (18%)

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +R  P  A+ +++  L      D+ T+ L   A A    +  G+ + D    AG+  DV+
Sbjct: 86  RRGSPASALRVFR-ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-- 225
           V ++L+++YA  G +  A K+F   P  D V+W++++AG+V+A    +A  +Y +M E  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 226 ------------------RN-------------------IIASNSMIVLFGRKGNVAEAC 248
                             RN                   ++ + S++ ++ + G +  AC
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264

Query: 249 RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308
           R+F  M  ++ VSWSA+IS + QN   +EAL LF NM    +  D   +VS L AC+N+ 
Sbjct: 265 RVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 309 VVKAGTSVHALAV-KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
            +K G SVH   V +    C   L  A I MYS CG + +A+ LF+   + DLI WN+MI
Sbjct: 325 FLKLGRSVHGFIVRRFDFNCI--LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
           +    CG+                            H +  + L+LF EM   G+RPD A
Sbjct: 383 AC---CGA----------------------------HGRGQDALTLFQEMNETGMRPDHA 411

Query: 428 TLVSVISACTHLVALDQGK-WIHAYIRKNGLKINSILG--TTLIDMYMKLGCVDNALEVF 484
           T  S++SA +H   +++GK W    +  N  KI         L+D+  + G V+ A ++ 
Sbjct: 412 TFASLLSALSHSGLVEEGKLWFGRMV--NHFKITPAEKHYVCLVDLLARSGLVEEASDLL 469

Query: 485 HGTE-EKGVSSWNALIIGFAMNGLADKSLEM 514
              + E  V+ W AL+ G     L +K LE+
Sbjct: 470 TSMKAEPTVAIWVALLSGC----LNNKKLEL 496



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 171/351 (48%), Gaps = 36/351 (10%)

Query: 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352
           D       LSACA L  ++ G SV                                ++ F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVR-------------------------------DRAF 135

Query: 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS 412
           DAG+  D+   +S++  Y + G++  A  +F  M  +D V+WSTM++G+    Q  + + 
Sbjct: 136 DAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQ 195

Query: 413 LFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
           ++  M+  G++ DE  ++ VI ACT    +  G  +H ++ ++G++++ +  T+L+DMY 
Sbjct: 196 MYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYA 255

Query: 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVG 532
           K G +D A  VF     +   SW+A+I GFA NG +D++L +F  M+ SG+ P+    V 
Sbjct: 256 KNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS 592
            L AC ++G +  G      +++  R + N       +D+  + G L  A+ L  +M   
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVR--RFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISD 372

Query: 593 PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHAS 641
            D+  W A++  C  HG  +    + +++ E  ++PDH  F  LLS +  S
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 176/421 (41%), Gaps = 80/421 (19%)

Query: 56  TGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQA 115
            G   D F  S L+        +  M  + K+F  +   +   ++TM+  ++    P  A
Sbjct: 137 AGYKDDVFVCSSLLHLYAR---WGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDA 193

Query: 116 ICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175
           I +Y+ M  + V  D      + QA     +V  G  +H H+L+ G   DV    +L++M
Sbjct: 194 IQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDM 253

Query: 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM------PER--- 226
           YA  G L  A ++F      + VSW+++++G+      +EA  ++  M      P+    
Sbjct: 254 YAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGAL 313

Query: 227 -----------------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257
                                        N I   + I ++ + G++A A  LF  +  +
Sbjct: 314 VSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDR 373

Query: 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317
           DL+ W+A+I+C   +   ++AL LF  M +  +  D     S+LSA ++  +V+ G    
Sbjct: 374 DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEG---- 429

Query: 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVE 377
               K+     +N      H      +IT AEK +     +DL++         + G VE
Sbjct: 430 ----KLWFGRMVN------HF-----KITPAEKHYVC--LVDLLA---------RSGLVE 463

Query: 378 KARALFDAM-IEKDVVSWSTMISGYAQHDQFSETLSL---FMEMQHHGIRPDEATLVSVI 433
           +A  L  +M  E  V  W  ++SG   + +     S+    +E+Q     PD+  +++++
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQ-----PDDVGVLALV 518

Query: 434 S 434
           S
Sbjct: 519 S 519



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 23/247 (9%)

Query: 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482
           RPD  T    +SAC  L  L  G+ +       G K +  + ++L+ +Y + G + +A++
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 483 VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR---- 538
           VF     +   +W+ ++ GF   G    +++M+  M++ GV  +E+  +GV+ AC     
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 539 -HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVAT 597
             MG    GH      +  H +  +      +VD+  + G+L  A  +   M    DV +
Sbjct: 225 VRMGASVHGH------LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV-S 277

Query: 598 WGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLL---SNIHASK-GRWDDVLEV 651
           W A++    ++G  +   R+ R +    +QPD       L   SNI   K GR      V
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR-----SV 332

Query: 652 RGMMVRR 658
            G +VRR
Sbjct: 333 HGFIVRR 339


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/704 (33%), Positives = 371/704 (52%), Gaps = 84/704 (11%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           ++++++ Y   ++   +   +  M + +V  + + +P L +AS L         +H   +
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKF 218
           + G DSD+Y+ N LIN YA       A K+FD                            
Sbjct: 138 RLGLDSDLYIANALINTYA---KFHNAGKVFD---------------------------- 166

Query: 219 IYNKMPERNIIASNSMIVLFGRKGNVAEAC--RLFKEMPKKDLVSWSALISCYEQNEMYE 276
                             +F ++G     C  ++F  MP +D+VSW+ +I+ + QN MY 
Sbjct: 167 ------------------VFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYV 208

Query: 277 EALVLFMNM-IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL 335
           EAL +   M  + ++  D   + S+L   A    V  G  +H  AV+ G +  + + ++L
Sbjct: 209 EALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSL 268

Query: 336 IHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWS 395
           I MY+                               KC  +E +   F  +  KD +SW+
Sbjct: 269 IDMYA-------------------------------KCNRLECSLRAFYILPRKDAISWN 297

Query: 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455
           ++I+G  Q+ +F   L  F  M    ++P   +  SVI AC HL AL  G+ +H  I + 
Sbjct: 298 SIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRL 357

Query: 456 GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF 515
           G   N  + ++L+DMY K G +  A  VF   +++ + +W A+I+G AM+G A  ++ +F
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLF 417

Query: 516 SEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575
             M + GV P  + F+ VL AC H GLVDEG R+FNSM ++  + P  +HY  + DLLGR
Sbjct: 418 ENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGR 477

Query: 576 AGMLKEAEELIESMP-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634
           AG L+EA + I +M  + P  + W  LL AC+ H   E+ E+V  KL+ +  ++ G +VL
Sbjct: 478 AGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVL 537

Query: 635 LSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNM 694
           +SNI+++  RW D   +R  M ++G+ K P CS IE    +H F+AGD++HP  ++I+  
Sbjct: 538 MSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKA 597

Query: 695 LDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKN 754
           LD + ++++ EGY  DT +V  D+D+E K   L  HSE+LAIA+G+I+ +    IR++KN
Sbjct: 598 LDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKN 657

Query: 755 LRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           +R+C DCHTA KFI++   REI VRD  RFHHFK+GSCSC D+W
Sbjct: 658 IRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 175/352 (49%), Gaps = 23/352 (6%)

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
           +WS++I CY  + +   +   F +M    V  +  V  S+L A   L   K   S+HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG--SVEK 378
           V++G++  + + NALI+ Y+   +   A K+FD                + K G   ++ 
Sbjct: 137 VRLGLDSDLYIANALINTYA---KFHNAGKVFDV---------------FPKRGESGIDC 178

Query: 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSVISACT 437
            + +FD M  +DVVSW+T+I+G+AQ+  + E L +  EM  +G ++PD  TL S++    
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNA 497
             V +++GK IH Y  +NG   +  +G++LIDMY K   ++ +L  F+    K   SWN+
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNS 298

Query: 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557
           +I G   NG  D+ L  F  M K  V P  ++F  V+ AC H+  +  G R  +  I   
Sbjct: 299 IIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG-RQLHGCIVRL 357

Query: 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
             + N      +VD+  + G +K A  + + +    D+  W A++  C  HG
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMHG 408



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 198/458 (43%), Gaps = 67/458 (14%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM-LNNNVGVDNYTYPLLAQASALR 144
           K+F  +   +   +NT++  + Q  +  +A+ + + M  N  +  D++T   +    A  
Sbjct: 181 KVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEH 240

Query: 145 LSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSIL 204
           + V +GK IH + ++ GFD DV++ ++LI+MYA C  L  + + F   P  D +SWNSI+
Sbjct: 241 VDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSII 300

Query: 205 AGYVNADNVEEAKFIYNKMPERNI------------------------------------ 228
           AG V     +     + +M + N+                                    
Sbjct: 301 AGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFD 360

Query: 229 ---IASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                ++S++ ++ + GN+  A  +F  + K+D+V+W+A+I     +    +A+ LF NM
Sbjct: 361 DNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENM 420

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAG-----TSVHALAVKIGIECYINLQNALIHMYS 340
           ++  V    V  ++VL+AC++  +V  G     +      +  G+E Y  + + L     
Sbjct: 421 LEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLL----- 475

Query: 341 SCGEITTAEKLFDAGHNLDLIS-----WNSMISGYLKCGSVEKARALFDAMIEKD---VV 392
             G     E+ +D   N+  +      W+ +++      SVE A  + D ++  D   + 
Sbjct: 476 --GRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMG 533

Query: 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
           ++  M + Y+   ++ +   L + M+  G++   A   S I     +     G   H Y 
Sbjct: 534 AYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPA--CSWIEVGNQVHTFMAGDKSHPYY 591

Query: 453 RKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490
                KIN  L   L++   K G V +  +V H  +E+
Sbjct: 592 D----KINKAL-DVLLEQMEKEGYVIDTNQVLHDVDEE 624



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 12/247 (4%)

Query: 48  QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
           +I    +  G   D F  S LI           +  S + F  L   +   +N+++   +
Sbjct: 248 EIHGYAVRNGFDGDVFIGSSLIDMYAKC---NRLECSLRAFYILPRKDAISWNSIIAGCV 304

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           Q     + +  ++ ML  NV     ++  +  A A   ++  G+ +H  +++ GFD + +
Sbjct: 305 QNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEF 364

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN 227
           + ++L++MYA CG++  AR +FD     D+V+W +I+ G     +  +A  ++  M E  
Sbjct: 365 IASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDG 424

Query: 228 I----IASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEA 278
           +    +A  +++      G V E  R F  M +       L  ++A+     +    EEA
Sbjct: 425 VRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEA 484

Query: 279 LVLFMNM 285
                NM
Sbjct: 485 YDFISNM 491


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/744 (31%), Positives = 378/744 (50%), Gaps = 76/744 (10%)

Query: 98  IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157
           ++  ++ AY+ R     AI L+  +L   + +D   +  +  A +    +  G+LIH   
Sbjct: 95  LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE-SPVLDLVSWNSILAGYVNADNVEEA 216
           ++AG      V + L++MY  CG L  A  LF      LD+V WN+++       +  EA
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREA 214

Query: 217 KFIYNKMPE-----------------------------------------RNIIASNSMI 235
             I+ +M +                                          +++ + +++
Sbjct: 215 LEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALV 274

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
             + R G +  A + F EMP+++ VSW+++I+ + Q   +  A+  F  M+   V+    
Sbjct: 275 NAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAMLLEGVVPTRS 333

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            + + L  C +L V +    V A+A +IG+   + +   L+  Y+ C     A ++F A 
Sbjct: 334 TLFAALEGCEDLRVARL---VEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAR 390

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
              +   W++ +                           + MI+ YAQ      T  L+ 
Sbjct: 391 EEGE---WDAALV--------------------------TAMIAVYAQCRDRRSTFKLWG 421

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKL 474
                GI PD    ++ + AC  L AL +G+ IHA +  +  L  +  LG  ++ MY + 
Sbjct: 422 AAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQC 481

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G + +A + F G   +   SWNA++   A +G  +   ++F  M + G     I F+ +L
Sbjct: 482 GSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLL 541

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
            AC H GLV  G  HF++M  +H + P ++HYGCMVDLLGR G L +A  ++++MP+ PD
Sbjct: 542 SACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPD 601

Query: 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654
            ATW AL+GAC+ +GD E G     +++EL+ DH   +V L NI+++ GRWDD   VR +
Sbjct: 602 AATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKI 661

Query: 655 MVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEV 714
           M   G+ KIPG S IE    +HEF+  DR+HPQ   I   L+ +   ++  GY   T EV
Sbjct: 662 MADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEV 721

Query: 715 AFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDR 774
             D+++E+KE  L  HSEKLAIAFG+++    + +R++KNLR+C DCH A+KFIS+ F R
Sbjct: 722 LHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGR 781

Query: 775 EIVVRDRHRFHHFKHGSCSCMDFW 798
           EIVVRD  RFHHFK G+CSC D+W
Sbjct: 782 EIVVRDVRRFHHFKDGACSCGDYW 805



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI-NSILGTTLIDMYMKLGCVDNALEV 483
           D A  V ++  C  +    +GK +H+ I  +     +  L ++L+ MY++ G +++A++V
Sbjct: 28  DSAAAVRLVRECNSIA---RGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDV 84

Query: 484 FHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543
           FH    K +  W  LI  +   G +  ++ +F  + + G+  + I FV VL AC     +
Sbjct: 85  FHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFL 144

Query: 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603
             G R  +    E  L         +V + GR G L++A  L   +    DV  W A++ 
Sbjct: 145 AAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMIT 203

Query: 604 ACKKHGDHEMGERVGRKLVEL--QPD 627
           A  ++G       +  ++++L   PD
Sbjct: 204 ANSQNGSPREALEIFYRMLQLGIPPD 229


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/700 (35%), Positives = 378/700 (54%), Gaps = 100/700 (14%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+R Y       + + +Y+ M    V  D + YP+L +++        G   H HVLK G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLG 55

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
             SD +V N +I+MYA        RK+ D         WN++++GY   ++  +A++   
Sbjct: 56  HGSDAFVRNAVIDMYA--------RKVAD---------WNAMVSGYWKWESEGQAQW--- 95

Query: 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL 281
                                       LF  MP++++++W+A+++ Y + +  E A   
Sbjct: 96  ----------------------------LFDVMPERNVITWTAMVTGYAKVKDLEAARRY 127

Query: 282 FMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS 341
           F  M +           SV+S                              NA++  Y+ 
Sbjct: 128 FDCMPER----------SVVS-----------------------------WNAMLSGYAQ 148

Query: 342 CGEITTAEKLFDA--GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
            G    A +LFD   G   + ++WN+MIS Y++ G ++ AR LF+ M  ++VV+W++MI+
Sbjct: 149 NGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIA 208

Query: 400 GYAQHDQFSETLSLFMEM-QHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
           GYAQ+ Q +  + LF EM     + PDE T+VSVISAC HL AL+ G W+  ++ +N +K
Sbjct: 209 GYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK 268

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
           ++      +I MY + G +++A  VF     + V S+N LI GFA +G   +++ + S M
Sbjct: 269 LSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTM 328

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578
           K+ G+ P+ +TF+GVL AC H GL++EG + F S+      +P   HY CMVDLLGR G 
Sbjct: 329 KEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI-----KDPAIDHYACMVDLLGRVGE 383

Query: 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638
           L++A+  +E MPM P    +G+LL A + H   E+GE    KL EL+PD+ G  +LLSNI
Sbjct: 384 LEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNI 443

Query: 639 HASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEM 698
           +AS GRW DV  +R  M + GV K  G S +E  G +H+F+  DR+H + ++I  +L E+
Sbjct: 444 YASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIEL 503

Query: 699 AKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRIC 758
            KK++  GY  D   V  D+++EEKE  +  HSEKLAI + L+       IR++KNLR+C
Sbjct: 504 RKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVC 563

Query: 759 NDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            DCHTA K IS+   R I+VRD +RFH F  G CSC D+W
Sbjct: 564 WDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 85/297 (28%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL 158
           +N M+  Y Q  + ++A+ L+  ML                  A R SV           
Sbjct: 139 WNAMLSGYAQNGLAEEALRLFDEML-----------------GAYRNSV----------- 170

Query: 159 KAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA-- 216
                      N +I+ Y   GDL +ARKLF+  P  ++V+WNS++AGY  A N + A  
Sbjct: 171 ---------TWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGY--AQNGQSAMA 219

Query: 217 ----------------------------------------KFIYNKMPERNIIASNSMIV 236
                                                   +F+     + +I   N+MI 
Sbjct: 220 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 279

Query: 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV 296
           ++ R G++ +A R+F+EM  +D+VS++ LIS +  +    EA+ L   M +  +  D V 
Sbjct: 280 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 339

Query: 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353
            + VL+AC++  +++ G  V        I+ Y      ++ +    GE+  A++  +
Sbjct: 340 FIGVLTACSHAGLLEEGRKVFESIKDPAIDHYA----CMVDLLGRVGELEDAKRTME 392



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 44/210 (20%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN-NNVGVDNYTYPLLAQA---- 140
           K+F  +   N   +N+M+  Y Q      AI L+K M+    +  D  T   +  A    
Sbjct: 190 KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 249

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            AL L  +  + + ++ +K         +N +I MY+ CG +  A+++F E    D+VS+
Sbjct: 250 GALELGNWVVRFLTENQIKLSISG----HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 305

Query: 201 NSILAGY--------------------VNADNV---------------EEAKFIYNKMPE 225
           N++++G+                    +  D V               EE + ++  + +
Sbjct: 306 NTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD 365

Query: 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMP 255
             I     M+ L GR G + +A R  + MP
Sbjct: 366 PAIDHYACMVDLLGRVGELEDAKRTMERMP 395


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/752 (32%), Positives = 389/752 (51%), Gaps = 91/752 (12%)

Query: 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161
           M+ A ++   P QA+ L+  M    +  D +    L  A     ++ EG+ +H+H++  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 162 FDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221
           F +D+ +   L+ MYA CG L  A+++F+   + DL +W+SI+A Y  A   E A  +Y 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 222 KM----------------------------------------PERNIIASNSMIVLFGRK 241
           +M                                        P+ +++  +S++ ++ + 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVL-QDSLLNMYLKC 179

Query: 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID-HRVMVDEVVVVSV 300
             + EA ++F+ M  +++ S++A+IS Y Q   + EAL LF  M     +  +     ++
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360
           L A   L  ++ G  VH      G +  + +QNAL+ MY                     
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYG-------------------- 279

Query: 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420
                      KCGS  +AR +FD+M  ++V+SW++MI+ YAQH    E L+LF  M   
Sbjct: 280 -----------KCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD-- 326

Query: 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480
            + P   +  S ++AC  L ALD+G+ IH  + +  L  +  + T+L+ MY + G +D+A
Sbjct: 327 -VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLA-SPQMETSLLSMYARCGSLDDA 384

Query: 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540
             VF+  + +   S NA+I  F  +G   ++L ++ +M++ G+  + ITFV VL AC H 
Sbjct: 385 RRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHT 444

Query: 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            LV +      S++ +H + P  +HY CMVD+LGR+G L +AEEL+E+MP   D   W  
Sbjct: 445 SLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMT 504

Query: 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660
           LL  CK+HGD + GER  RK+ EL P     +V LSN++A+  R+DD   VR  M  RGV
Sbjct: 505 LLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGV 564

Query: 661 VKIPGCSMIEANGIIHEFLAGDRTHPQ-------INEIDNMLDEMAKKLKLEGYAPDTLE 713
            +    S IE +  +H F +G R   Q       +  + ++L E+ + +K  GY PDT E
Sbjct: 565 TRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTRE 624

Query: 714 VAFD----IDQEEKETTLFRHSEKLAIAFGLITISPPN---PIRIMKNLRICNDCHTAAK 766
           V  +      +EEK+ +L  HSE+LAIA+GLI    P+   P+R++ + R+C+ CH+A K
Sbjct: 625 VYLEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIK 684

Query: 767 FISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
            +S   ++ I VRD  RFHHF+ G+CSC D W
Sbjct: 685 LLSDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/519 (21%), Positives = 227/519 (43%), Gaps = 90/519 (17%)

Query: 39  KCQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSF----KIFAFLESP 94
           K Q+ ++  ++   +I+TG   D       I   T LL       S     ++F  +E  
Sbjct: 42  KLQALEEGRRLHEHLIITGFRTD-------IPLETALLQMYAKCGSLDDAKRVFEGMEIK 94

Query: 95  NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154
           + F +++++ AY +    + A+ LY+ M+   V  +  T+       A    + +G+ IH
Sbjct: 95  DLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 154

Query: 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA---- 210
             +L +    D  + ++L+NMY  C ++  ARK+F+     ++ S+ ++++ YV A    
Sbjct: 155 QRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHA 214

Query: 211 --------------------------------DNVEEAKFIYNKMPER----NIIASNSM 234
                                            N+E+ + ++  +  R    N++  N++
Sbjct: 215 EALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNAL 274

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           + ++G+ G+  EA ++F  M  ++++SW+++I+ Y Q+   +EAL LF  M    V    
Sbjct: 275 VTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSG 331

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
           V   S L+ACA L  +  G  +H   V+  +     ++ +L+ MY+ CG +  A ++F+ 
Sbjct: 332 VSFSSALNACALLGALDEGREIHHRVVEANL-ASPQMETSLLSMYARCGSLDDARRVFNR 390

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
               D  S N+M                               I+ + QH +  + L ++
Sbjct: 391 MKTRDAFSCNAM-------------------------------IAAFTQHGRKKQALRIY 419

Query: 415 MEMQHHGIRPDEATLVSVISACTH--LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472
            +M+  GI  D  T VSV+ AC+H  LVA D   ++ + +  +G+         ++D+  
Sbjct: 420 RKMEQEGIPADGITFVSVLVACSHTSLVA-DCRDFLQSLVMDHGVVPLVEHYLCMVDVLG 478

Query: 473 KLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADK 510
           + G + +A E+      +    +W  L+ G   +G  D+
Sbjct: 479 RSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDR 517


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 330/570 (57%), Gaps = 41/570 (7%)

Query: 234 MIVLFGRKGNVAEACRLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM 291
           +I ++ +   V  A ++F+E    +K  V ++AL+S Y  N    EA++LF  M +  V 
Sbjct: 90  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVP 149

Query: 292 VDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351
           V+ V ++ ++ AC +   ++ G+S+H   +K G +  +++ N  I MY            
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMY------------ 197

Query: 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411
                              +KCGSV  A+ LFD M  K ++SW+ M+SGYAQ+   +  L
Sbjct: 198 -------------------MKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVL 238

Query: 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471
            L+  M  +G+ PD  TLV V+S+C +L A   G  +   I+ +G   N  L   LI+MY
Sbjct: 239 ELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMY 298

Query: 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531
            + G +  A  VF G  E+ + SW A+I G+ M+G  + ++++F EM +SG+ P+   FV
Sbjct: 299 ARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFV 358

Query: 532 GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591
            VL AC H GL D+G  +F  M + ++LEP  +HY CMVDLLGRAG LKEA+ LIESMP+
Sbjct: 359 CVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPI 418

Query: 592 SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651
            PD A WGALLGACK H + E+ E    +++EL+P++ G++VLLSNI+++      VL +
Sbjct: 419 KPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRI 478

Query: 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDT 711
           R MM  + + K PGCS +E  G +H F+ GDR H Q +EI  +L+E+   +  E   P+ 
Sbjct: 479 RIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK 538

Query: 712 LEVAFDIDQEEKETTLFR---HSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFI 768
                D  +E  +    R   HSEKLA+AFGL+  +    + I+KNLRIC DCH   K +
Sbjct: 539 -----DNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMV 593

Query: 769 SRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           S+   R++ VRD  RFHHF++GSCSC D+W
Sbjct: 594 SKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 222/526 (42%), Gaps = 90/526 (17%)

Query: 99  FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL-LAQASALRLSVFEGKLIHDHV 157
           +NT +R   +R    QA+ LY  ML +    + +T+P  L   +AL L +  G   H  +
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPIL-GSQFHGQI 75

Query: 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE---SPVLDLVSWNSILAGYVNADNVE 214
            K G   + +V   LI+MY     +  ARK+F+E   S  L  V +N++++GYV+     
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLT-VCYNALVSGYVSNSKCS 134

Query: 215 EAKFIYNKMPERNIIAS---------------------------------------NSMI 235
           EA  ++ +M E  +  +                                       N  I
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV 295
            ++ + G+V  A +LF EMP K L+SW+A++S Y QN +    L L+ NM  + V  D V
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 296 VVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG 355
            +V VLS+CANL     G  V       G      L NALI+MY+ CG +T A+ +FD  
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314

Query: 356 HNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFM 415
               L+SW ++I GY                                 H      + LF 
Sbjct: 315 PERTLVSWTAIIGGY-------------------------------GMHGHGEIAVQLFK 343

Query: 416 EMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKL 474
           EM   GI PD    V V+SAC+H    DQG      +++N  L+      + ++D+  + 
Sbjct: 344 EMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRA 403

Query: 475 GCVDNALEVFHGTEEKGVSS-WNALIIGFAMNG---LADKSLEMFSEMKKSGVTPNEITF 530
           G +  A  +      K   + W AL+    ++    LA+ + E   E++     P  I +
Sbjct: 404 GRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELE-----PENIGY 458

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGR 575
             +L          +G      M++E +L+   K  GC  V+L GR
Sbjct: 459 YVLLSNIYSNANNSKGVLRIRIMMKEKKLK---KDPGCSYVELKGR 501



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR 453
           W+T +   A+  QF + LSL+ +M  HG RP+  T    + +C  L     G   H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 454 KNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT--EEKGVSSWNALIIGFAMNGLADKS 511
           K G      + T LI MY K   VDNA +VF       K    +NAL+ G+  N    ++
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571
           + +F +M + GV  N +T +G++ AC     ++ G     S ++ +  + +     C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCFIT 195

Query: 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609
           +  + G +  A++L + MP+   + +W A++    ++G
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSGYAQNG 232



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 41/248 (16%)

Query: 81  MSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA 140
           ++Y+ K+F  +       +N M+  Y Q  +    + LY+ M  N V  D  T   +  +
Sbjct: 203 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 262

Query: 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200
            A   +   G  +   +  +GF S+ ++NN LINMYA CG+L+ A+ +FD  P   LVSW
Sbjct: 263 CANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW 322

Query: 201 NSILAGY--------------------VNAD--------------NVEEAKFIYNKMPER 226
            +I+ GY                    +  D               + +    Y KM +R
Sbjct: 323 TAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR 382

Query: 227 NIIAS------NSMIVLFGRKGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYEEAL 279
           N          + M+ L GR G + EA  L + MP K D   W AL+   + ++  E A 
Sbjct: 383 NYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAE 442

Query: 280 VLFMNMID 287
           + F  +I+
Sbjct: 443 LAFERVIE 450


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/761 (33%), Positives = 390/761 (51%), Gaps = 85/761 (11%)

Query: 86  KIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRL 145
           K+F  +       +N M+ AY Q++  +QAI ++  ML   V  +  T+  +  A +   
Sbjct: 156 KVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLK 215

Query: 146 SVFEGKLI--------HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD------- 190
            +   KL+        HDH+  + F +       L+N Y  CGDL  A + F        
Sbjct: 216 DLEVAKLVKLCVEEREHDHLHDSSFAT------ALVNFYGSCGDLEQAFRAFSRHRLELI 269

Query: 191 ---------------------------ESPVLDLVSWNSILAGYVNADNVEEAKFIYNKM 223
                                      E   LD ++  ++L        +EE + I+  M
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFM 329

Query: 224 PE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279
            E    R++ A N++I ++G+ G++ EA  +F+ M  +D++SW+ +I+ + Q+  + EAL
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEAL 389

Query: 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMY 339
            L   M    V  D++  V+ L  CA    +  G  +H+  V+ GI+  + L NA++ MY
Sbjct: 390 HLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMY 449

Query: 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMIS 399
            S                               C S + A  +F AM  +D VSW+ MI+
Sbjct: 450 GS-------------------------------CKSTDDASRVFRAMKVRDQVSWNAMIT 478

Query: 400 GYAQHDQFS-ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458
            YA   + S E L LF +MQ HG  PD  + V+ +SAC    +L +GK +H  IR+ GL+
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLE 538

Query: 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEM 518
            N  +   +++MY K G +  A ++F       V SWN +I  FA +G AD+ L  F  M
Sbjct: 539 SNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 519 KKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPNSKHYGCMVDLLGRAG 577
              G  PN++TFV V+ AC H GLV +G + F S++ +   + P ++HY CMVDL+ RAG
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637
            L  AE+ I + P+ PD      +LGA K H D E   +    L+EL PD    +V+LSN
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 638 IHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDE 697
           ++   G+ D+  ++R +M  + + K P  S I     +HEF  GD T+ +  EI   L+ 
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 698 MAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRI 757
           ++ ++   GY PDT  +  D+  E+K+  L  HSEKLAIAFGLI+ +P   +RI+KNLR+
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRV 838

Query: 758 CNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798
           C DCHTA KFIS+   REIVVRD HRFHHF +G+CSC D+W
Sbjct: 839 CGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/602 (25%), Positives = 278/602 (46%), Gaps = 80/602 (13%)

Query: 63  FAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLM 122
           F    L++   D    I+    F     +   +   +  ++RA+ Q    +QA+ L++ M
Sbjct: 34  FMGDLLVRMYVDCGSLIDAKACFD---RMPVQDALTWARLIRAHGQIGDSEQALHLFRSM 90

Query: 123 LNNNVGVDNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181
               V   N  +  +L   SA    + EG+ IH  +     +SD YV+ TL++MY  C  
Sbjct: 91  QLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSS 150

Query: 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIA----------- 230
           +  ARK+FD      +V WN+++  Y   D+ E+A  ++  M    + A           
Sbjct: 151 VEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDA 210

Query: 231 ------------------------------SNSMIVLFGRKGNVAEACRLFKEMPKKDLV 260
                                         + +++  +G  G++ +A R F    + +L+
Sbjct: 211 CSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRH-RLELI 269

Query: 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320
             +A+I+ Y Q E ++EAL LF  M+   V +D +  ++VL+AC+    ++ G  +H   
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFM 329

Query: 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380
            +I  + ++N  NALI+MY  CG +  A ++F +  + D+ISWN                
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWN---------------- 373

Query: 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440
                          T+I+ + QH Q  E L L   MQ  G++ D+ + V+ +  C    
Sbjct: 374 ---------------TIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSE 418

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           AL +G+ IH++I ++G+K + +L   ++DMY      D+A  VF   + +   SWNA+I 
Sbjct: 419 ALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMIT 478

Query: 501 GFAMNG-LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559
            +A    L+ ++L +F +M+  G  P+ I+FV  L AC     + EG +  +  I+E  L
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGL 537

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGR 619
           E N      ++++  ++G L  A ++   MP+ PDV +W  ++ A  +HG  +   R  R
Sbjct: 538 ESNMTVANAVLNMYAKSGTLVLARKMFGKMPL-PDVISWNGMISAFAQHGHADQVLRFFR 596

Query: 620 KL 621
           ++
Sbjct: 597 RM 598



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 32/239 (13%)

Query: 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359
           +L   A+   +  G  VHA   K  ++    + + L+ MY  CG +  A+  FD     D
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQD 63

Query: 360 LISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419
            ++W  +I  + + G  E+A                               L LF  MQ 
Sbjct: 64  ALTWARLIRAHGQIGDSEQA-------------------------------LHLFRSMQL 92

Query: 420 HGIRPDEATLVSVISACT-HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478
            G+ P     V+V+ AC+     L++G+ IH  +R   ++ +  + TTL+ MY K   V+
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537
           +A +VF G   K V  WNA+I  +A     ++++++F  M   GV    ITF+GVL AC
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDAC 211



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500
           +LD GK +HA I K+ +     +G  L+ MY+  G + +A   F     +   +W  LI 
Sbjct: 13  SLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIR 72

Query: 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR-HMGLVDEGHRHFNSMIQEHRL 559
                G ++++L +F  M+  GV P    FV VLGAC     L++EG R  + +++   +
Sbjct: 73  AHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEG-RRIHGVLRGTAM 131

Query: 560 EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617
           E +      ++ + G+   +++A ++ + +     V  W A++ A  +   HE   +V
Sbjct: 132 ESDHYVSTTLLHMYGKCSSVEDARKVFDGI-RHKRVVEWNAMITAYAQQDHHEQAIQV 188


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/568 (39%), Positives = 328/568 (57%), Gaps = 36/568 (6%)

Query: 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV 290
           +N +I ++ +   + EA  LF +MP++++VSW+ +IS Y   ++ + A+ L   M    V
Sbjct: 323 TNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGV 382

Query: 291 MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEK 350
           M +     SVL AC  L  +K    +H+  +K+G+E  + +++ALI +YS  GE+  A K
Sbjct: 383 MPNMFTFSSVLRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALK 439

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +                               F  M+  D V W+++I+ +AQH    E 
Sbjct: 440 V-------------------------------FREMMTGDSVVWNSIIAAFAQHSDGDEA 468

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           L L+  M+  G   D++TL SV+ ACT L  L+ G+  H ++ K     + IL   L+DM
Sbjct: 469 LHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDM 526

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K G +++A  +F+   +K V SW+ +I G A NG + ++L +F  MK  G  PN IT 
Sbjct: 527 YCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITI 586

Query: 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP 590
           +GVL AC H GLV+EG  +F SM   + ++P  +HYGCM+DLLGRA  L +  +LI  M 
Sbjct: 587 LGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMN 646

Query: 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650
             PDV TW  LL AC+   + ++     +++++L P   G +VLLSNI+A   RW+DV E
Sbjct: 647 CEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAE 706

Query: 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPD 710
           VR  M +RG+ K PGCS IE N  IH F+ GD++HPQI+EI+  L++   +L   GY PD
Sbjct: 707 VRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPD 766

Query: 711 TLEVAFDIDQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISR 770
           T  V  D++ E++E +L  HSEKLAI FG+++      IRI KNL+IC DCH  AK I+ 
Sbjct: 767 TNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAE 826

Query: 771 AFDREIVVRDRHRFHHFKHGSCSCMDFW 798
              R IV+RD  R+HHF+ G CSC D+W
Sbjct: 827 LEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 200/437 (45%), Gaps = 86/437 (19%)

Query: 108 QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
           +R++P  A+ +   M    V  D+ TY  L +      +V EGK +H H+   G+    +
Sbjct: 263 RRDLPS-AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTF 321

Query: 168 VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEA----KFIYNK- 222
           + N LINMY     L  A+ LFD+ P  ++VSW ++++ Y NA   + A     F++   
Sbjct: 322 LTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDG 381

Query: 223 -MP------------------------------ERNIIASNSMIVLFGRKGNVAEACRLF 251
            MP                              E ++   +++I ++ + G + EA ++F
Sbjct: 382 VMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVF 441

Query: 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311
           +EM   D V W+++I+ + Q+   +EAL L+ +M       D+  + SVL AC +L++++
Sbjct: 442 REMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLE 501

Query: 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYL 371
            G   H   +K   +  +N  NAL+ MY  CG +  A+ +F+     D+ISW++MI    
Sbjct: 502 LGRQAHVHVLKFDQDLILN--NALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMI---- 555

Query: 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS 431
                                      +G AQ+    E L+LF  M+  G +P+  T++ 
Sbjct: 556 ---------------------------AGLAQNGFSMEALNLFESMKVQGPKPNHITILG 588

Query: 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGT--------TLIDMYMKLGCVDNALEV 483
           V+ AC+H   +++G +   Y R     +N++ G          ++D+  +   +D+ +++
Sbjct: 589 VLFACSHAGLVNEGWY---YFR----SMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKL 641

Query: 484 FHGTE-EKGVSSWNALI 499
            H    E  V +W  L+
Sbjct: 642 IHEMNCEPDVVTWRTLL 658



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 9/260 (3%)

Query: 351 LFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410
           +F  G++      N +I+ Y+K   +E+A+ LFD M E++VVSW+TMIS Y+        
Sbjct: 311 IFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRA 370

Query: 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470
           + L   M   G+ P+  T  SV+ AC  L  L Q   +H++I K GL+ +  + + LID+
Sbjct: 371 MRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQ---LHSWIMKVGLESDVFVRSALIDV 427

Query: 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530
           Y K+G +  AL+VF          WN++I  FA +   D++L ++  M++ G   ++ T 
Sbjct: 428 YSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTL 487

Query: 531 VGVLGACRHMGLVDEGHR-HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589
             VL AC  + L++ G + H + +  +  L  N+     ++D+  + G L++A+ +   M
Sbjct: 488 TSVLRACTSLSLLELGRQAHVHVLKFDQDLILNN----ALLDMYCKCGSLEDAKFIFNRM 543

Query: 590 PMSPDVATWGALLGACKKHG 609
               DV +W  ++    ++G
Sbjct: 544 A-KKDVISWSTMIAGLAQNG 562



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 183/408 (44%), Gaps = 56/408 (13%)

Query: 87  IFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS 146
           +F  +   N   + TM+ AY    +  +A+ L   M  + V  + +T+  + +A      
Sbjct: 342 LFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACE---R 398

Query: 147 VFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAG 206
           +++ K +H  ++K G +SDV+V + LI++Y+  G+L  A K+F E    D V WNSI+A 
Sbjct: 399 LYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAA 458

Query: 207 YVNADNVEEAKFIYNKMP-------------------------------------ERNII 229
           +    + +EA  +Y  M                                      ++++I
Sbjct: 459 FAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLI 518

Query: 230 ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289
            +N+++ ++ + G++ +A  +F  M KKD++SWS +I+   QN    EAL LF +M    
Sbjct: 519 LNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQG 578

Query: 290 VMVDEVVVVSVLSACANLTVVKAG-TSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348
              + + ++ VL AC++  +V  G     ++    GI+        ++ +     ++   
Sbjct: 579 PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDM 638

Query: 349 EKLF-DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQH 404
            KL  +     D+++W +++       +V+ A      +++   +D  ++  + + YA  
Sbjct: 639 VKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAIS 698

Query: 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYI 452
            ++++   +   M+  GIR +          C+    ++  K IHA+I
Sbjct: 699 KRWNDVAEVRRTMKKRGIRKE--------PGCS---WIEVNKQIHAFI 735



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 5/194 (2%)

Query: 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476
           M+  G+  D  T   +I  C    A+ +GK +H +I  NG    + L   LI+MY+K   
Sbjct: 276 MERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNL 335

Query: 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536
           ++ A  +F    E+ V SW  +I  ++   L D+++ + + M + GV PN  TF  VL A
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA 395

Query: 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVA 596
           C  +  + + H    S I +  LE +      ++D+  + G L EA ++   M M+ D  
Sbjct: 396 CERLYDLKQLH----SWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM-MTGDSV 450

Query: 597 TWGALLGACKKHGD 610
            W +++ A  +H D
Sbjct: 451 VWNSIIAAFAQHSD 464


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/788 (31%), Positives = 401/788 (50%), Gaps = 74/788 (9%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+L  +I  G       A+ LI   +      E  Y   +F  +   +   +N M+ AY 
Sbjct: 318  QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY---VFDHMNECDIISWNAMISAYA 374

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY 167
               + ++++  +  M + +   ++ T   L    +   ++  G+ IH  V+K G DS+V 
Sbjct: 375  HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 434

Query: 168  VNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYV------------------- 208
            + NTL+ +Y+  G    A  +F      DL+SWNS++A YV                   
Sbjct: 435  ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 494

Query: 209  ----------------NADNVEEAKFIYNKMPERN----IIASNSMIVLFGRKGNVAEAC 248
                            N + + E+K ++  +        +I  N+++ ++G+ G + EA 
Sbjct: 495  KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 554

Query: 249  RLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC-ANL 307
            ++ + MP+ D V+W+ALI  + +NE   EA+  +  + +  +  + + +VSVL AC A  
Sbjct: 555  KVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 614

Query: 308  TVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367
             ++K G  +HA  V  G E    ++N+LI MY+                           
Sbjct: 615  DLLKHGMPIHAHIVLTGFESDDYVKNSLITMYA--------------------------- 647

Query: 368  SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA 427
                KCG +  +  +FD +  K  ++W+ M++  A H    E L +F EM++ G+  D+ 
Sbjct: 648  ----KCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQF 703

Query: 428  TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGT 487
            +    ++A  +L  L++G+ +H  + K G + +  +    +DMY K G + + L++    
Sbjct: 704  SFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 763

Query: 488  EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547
              +   SWN LI  FA +G   K+ E F EM K G  P+ +TFV +L AC H GLVDEG 
Sbjct: 764  INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 823

Query: 548  RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607
             +++SM +E  + P  +H  C++DLLGR+G L  AE  I+ MP+ P+   W +LL AC+ 
Sbjct: 824  AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 883

Query: 608  HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667
            HG+ E+  +    L+EL P  D  +VL SN+ A+ G+W+DV  +R  M    + K P CS
Sbjct: 884  HGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACS 943

Query: 668  MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTL 727
             ++    +H F  G++ HPQ + I   L E+ K  K  GY PDT     D+D+E+KE  L
Sbjct: 944  WVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNL 1003

Query: 728  FRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHF 787
            + HSE+LA+AFGLI     + +RI KNLR+C DCH+  KF+S    R+IV+RD +RFHHF
Sbjct: 1004 WNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHF 1063

Query: 788  KHGSCSCM 795
              G CSC+
Sbjct: 1064 SGGKCSCV 1071



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 156/615 (25%), Positives = 278/615 (45%), Gaps = 82/615 (13%)

Query: 43  FKQFTQILSQMILTGLIADTFAAS-RLIKFSTDLL-----PFIEMSYSFKIFAFLESPNG 96
            K F++I SQM    L A     S  L  F T+ L      F  + ++  +F  +   N 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 97  FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVF---EGKLI 153
             ++TM+  Y++  + ++A+ L+  M    +GV+   + + +  +A   S +   EG  +
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWG--LGVEPNGFMVASLITACSRSGYMADEGFQV 218

Query: 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNV 213
           H  V+K G   DVYV   L++ Y   G +  A+KLF+E P  ++VSW S++ GY ++ N 
Sbjct: 219 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 278

Query: 214 EEAKFIYNKMP---------------------------------------ERNIIASNSM 234
            E   +Y +M                                        E ++  +NS+
Sbjct: 279 GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 235 IVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294
           I +F    +V EAC +F  M + D++SW+A+IS Y  + +  E+L  F  M       + 
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA 354
             + S+LS C+++  +K G  +H L VK+G++  + + N L+ +YS              
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS-------------- 444

Query: 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414
                            + G  E A  +F AM E+D++SW++M++ Y Q  +  + L + 
Sbjct: 445 -----------------EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKIL 487

Query: 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474
            E+   G   +  T  S ++AC++   L + K +HA I   G     I+G  L+ MY KL
Sbjct: 488 AELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 547

Query: 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL 534
           G +  A +V     +    +WNALI G A N   +++++ +  +++ G+  N IT V VL
Sbjct: 548 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVL 607

Query: 535 GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD 594
           GAC     + +     ++ I     E +      ++ +  + G L  +  + + +     
Sbjct: 608 GACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP 667

Query: 595 VATWGALLGACKKHG 609
           + TW A++ A   HG
Sbjct: 668 I-TWNAMVAANAHHG 681



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 233/507 (45%), Gaps = 76/507 (14%)

Query: 146 SVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILA 205
           S   GK +H   +    +  ++  NTLINMY+  G++  AR +FDE    +  SW+++L+
Sbjct: 109 SQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLS 168

Query: 206 GYVNADNVEEAKFIYNKM------PERNIIAS---------------------------- 231
           GYV     EEA  ++ +M      P   ++AS                            
Sbjct: 169 GYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGIL 228

Query: 232 ------NSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNM 285
                  +++  +G  G V  A +LF+EMP  ++VSW++L+  Y  +    E L ++  M
Sbjct: 229 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 288

Query: 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345
               V  ++    +V S+C  L     G  V    ++ G E  +++ N+LI M+SS    
Sbjct: 289 RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFS-- 346

Query: 346 TTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405
                                        SVE+A  +FD M E D++SW+ MIS YA H 
Sbjct: 347 -----------------------------SVEEACYVFDHMNECDIISWNAMISAYAHHG 377

Query: 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT 465
              E+L  F  M+H     +  TL S++S C+ +  L  G+ IH  + K GL  N  +  
Sbjct: 378 LCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICN 437

Query: 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525
           TL+ +Y + G  ++A  VF    E+ + SWN+++  +  +G     L++ +E+ + G   
Sbjct: 438 TLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM 497

Query: 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585
           N +TF   L AC +   + E  +  +++I              +V + G+ GM+ EA+++
Sbjct: 498 NHVTFASALAACSNPECLIES-KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKV 556

Query: 586 IESMPMSPDVATWGALLGACKKHGDHE 612
           +++MP  PD  TW AL+G    H ++E
Sbjct: 557 LQTMP-QPDRVTWNALIGG---HAENE 579


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/800 (32%), Positives = 421/800 (52%), Gaps = 85/800 (10%)

Query: 48   QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYI 107
            Q+L+++  +G + D +  S L+   +    F     +  IF  +   N    N +M   +
Sbjct: 776  QMLARVEKSGFLQDLYVGSALV---SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV 832

Query: 108  QRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA----SALRLSVFEGKLIHDHVLKAGF- 162
            ++   + A  ++  M  + VG+++ +Y +L  A    S L     +G+ +H HV++ G  
Sbjct: 833  KQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLN 891

Query: 163  DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIY-- 220
            D+ V + N L+NMYA  G ++ A  +F+     D VSWNS+++G    +  E+A   +  
Sbjct: 892  DNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLR 951

Query: 221  ----NKMP---------------------------------ERNIIASNSMIVLFGRKGN 243
                  MP                                 + ++  SN+++ L+   G 
Sbjct: 952  MRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGC 1011

Query: 244  VAEACRLFKEMPKKDLVSWSALISCYEQNEM-YEEALVLFMNMIDHRVMVDEVVVVSVLS 302
              E  ++F  MP+ D VSW+++I     +E    +A+  F+ M+     +  V  +++LS
Sbjct: 1012 FTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILS 1071

Query: 303  ACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS 362
            A ++L++ +    +HAL +K  +     + NAL+    SC                    
Sbjct: 1072 AVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALL----SC-------------------- 1107

Query: 363  WNSMISGYLKCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421
                   Y KCG + +   +F  M E +D VSW++MISGY  ++   + + L   M   G
Sbjct: 1108 -------YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG 1160

Query: 422  IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481
             R D  T  +V+SAC  +  L++G  +HA   +  ++ + ++G+ L+DMY K G +D A 
Sbjct: 1161 QRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYAS 1220

Query: 482  EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT-FVGVLGACRHM 540
              F     + V SWN++I G+A +G  +K+L++F+ M   G  P+ +   +GVL AC H+
Sbjct: 1221 RFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHV 1280

Query: 541  GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600
            G V+EG  HF SM + +RL P  +H+ CMVDLLGRAG L E  + I SMPM P+V  W  
Sbjct: 1281 GFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRT 1340

Query: 601  LLGAC-KKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658
            +LGAC + +G + E+G R    L+EL+P +   +VLL+N++AS  +W+DV + R  M   
Sbjct: 1341 VLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEA 1400

Query: 659  GVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDI 718
             V K  GCS +     +H F+AGD+ HP+ + I + L E+ +K++  GY P T    FD+
Sbjct: 1401 AVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDL 1460

Query: 719  DQEEKETTLFRHSEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVV 778
            + E KE  L  HSEK+A+AF ++T     PIRIMKNLR+C DCH+A  +IS+   R+IV+
Sbjct: 1461 ELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVL 1519

Query: 779  RDRHRFHHFKHGSCSCMDFW 798
            RD +RFHHF+ G CSC D+W
Sbjct: 1520 RDSNRFHHFEDGKCSCGDYW 1539



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/659 (22%), Positives = 288/659 (43%), Gaps = 109/659 (16%)

Query: 5    TKLAHLSSTIKSSVNAKPIFKPTINLSILETHLQKCQSFKQFTQILSQMILTGLIADTFA 64
            T  +H ++T+ SS      F+  IN      +   C S ++  ++  Q I  G + + F 
Sbjct: 531  TSTSHCNTTLFSS---SETFESLIN-----RYQGSCCS-EEARELHLQSIKYGFVGNLFL 581

Query: 65   ASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLN 124
            ++ LI     +    ++  + K+F  + + N   +  ++  Y Q   P +A   ++ M+ 
Sbjct: 582  SNTLINIYVRIG---DLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVR 638

Query: 125  NNVGVDNYTYPLLAQASALRLSVFEG----KL---IHDHVLKAGFDSDVYVNNTLINMYA 177
                 ++Y +      SALR     G    KL   IH  + K  + SDV V N LI+MY 
Sbjct: 639  AGFIPNHYAF-----GSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 693

Query: 178  VCGD-LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----------- 225
             C D  + AR +FD   + + +SWNSI++ Y    +   A  +++ M +           
Sbjct: 694  SCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNE 753

Query: 226  ----------------------------------RNIIASNSMIVLFGRKGNVAEACRLF 251
                                              +++   ++++  F R G   +A  +F
Sbjct: 754  YTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIF 813

Query: 252  KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV- 310
            ++M  +++VS + L+    + +  E A  +F  M D  V ++    V +LSA +  +V+ 
Sbjct: 814  EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKD-LVGINSDSYVVLLSAFSEFSVLE 872

Query: 311  ---KAGTSVHALAVKIGI-ECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSM 366
               + G  VHA  ++ G+ +  + + N L++MY+                          
Sbjct: 873  EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA-------------------------- 906

Query: 367  ISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426
                 K G++  A ++F+ M+EKD VSW+++ISG  Q++   +    F+ M+  G  P  
Sbjct: 907  -----KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSN 961

Query: 427  ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486
             TL+S +S+C  L  +  G+ IH    K GL  +  +   L+ +Y + GC    L+VF  
Sbjct: 962  FTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSL 1021

Query: 487  TEEKGVSSWNALIIGFA-MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545
              E    SWN++I   +       ++++ F EM + G   + +TF+ +L A   + L + 
Sbjct: 1022 MPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEV 1081

Query: 546  GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGA 604
             H+  ++++ ++ L  ++     ++   G+ G + E E++   M  + D  +W +++  
Sbjct: 1082 SHQ-IHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 1139


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,916,049,442
Number of Sequences: 23463169
Number of extensions: 484032963
Number of successful extensions: 1354556
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9257
Number of HSP's successfully gapped in prelim test: 3010
Number of HSP's that attempted gapping in prelim test: 1107755
Number of HSP's gapped (non-prelim): 74440
length of query: 798
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 647
effective length of database: 8,816,256,848
effective search space: 5704118180656
effective search space used: 5704118180656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)