Query 003746
Match_columns 798
No_of_seqs 876 out of 5189
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 11:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-136 8E-141 1204.6 80.7 761 26-796 82-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-120 9E-125 1043.1 74.2 613 93-798 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.3E-78 9.2E-83 711.4 63.1 671 93-793 48-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.8E-66 8.3E-71 595.9 53.5 517 58-596 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2E-63 4.4E-68 573.4 61.5 542 164-713 368-960 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-63 3.3E-68 573.8 43.5 462 58-560 83-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-33 9E-38 336.9 64.8 606 40-660 240-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-33 1.9E-37 334.0 66.6 603 41-659 207-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 4.9E-31 1.1E-35 222.5 8.8 106 665-788 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 6.5E-24 1.4E-28 257.0 64.7 599 43-660 44-743 (1157)
11 PRK11447 cellulose synthase su 100.0 4.4E-23 9.5E-28 249.9 58.6 570 77-659 40-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.2E-21 2.6E-26 226.1 58.0 563 78-660 57-742 (987)
13 PRK09782 bacteriophage N4 rece 99.9 3.1E-19 6.6E-24 206.3 55.1 541 98-659 44-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 6.7E-21 1.5E-25 194.1 35.4 384 260-655 117-516 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 5.9E-19 1.3E-23 180.1 30.7 415 237-661 57-488 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 6.2E-17 1.3E-21 184.4 44.1 418 230-658 129-571 (615)
17 KOG2002 TPR-containing nuclear 99.8 4.6E-16 9.9E-21 168.0 45.6 535 112-659 146-746 (1018)
18 PRK11788 tetratricopeptide rep 99.8 5.4E-18 1.2E-22 183.4 30.4 288 372-665 47-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 4.7E-15 1E-19 160.3 48.2 569 81-661 146-801 (1018)
20 PRK11788 tetratricopeptide rep 99.8 3.2E-17 6.9E-22 177.3 31.8 282 338-623 44-346 (389)
21 TIGR00990 3a0801s09 mitochondr 99.8 2E-15 4.3E-20 172.2 43.9 269 373-657 307-596 (615)
22 PRK10049 pgaA outer membrane p 99.8 2.7E-15 6E-20 174.0 43.7 389 231-659 18-457 (765)
23 PRK15174 Vi polysaccharide exp 99.8 1.5E-15 3.2E-20 172.4 40.4 350 240-629 17-386 (656)
24 PRK10049 pgaA outer membrane p 99.8 5.1E-15 1.1E-19 171.8 42.4 408 199-632 17-464 (765)
25 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3E-19 164.6 43.8 427 207-659 44-514 (822)
26 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.5E-20 171.2 36.4 316 336-660 49-383 (656)
27 PRK14574 hmsH outer membrane p 99.7 1.5E-13 3.2E-18 156.3 45.6 433 142-632 45-521 (822)
28 KOG0495 HAT repeat protein [RN 99.7 5.2E-11 1.1E-15 123.6 52.4 600 43-675 267-895 (913)
29 KOG2003 TPR repeat-containing 99.7 4E-14 8.6E-19 139.9 28.3 451 166-645 201-710 (840)
30 KOG2076 RNA polymerase III tra 99.7 1.3E-11 2.8E-16 133.4 46.3 531 109-641 152-786 (895)
31 KOG4422 Uncharacterized conser 99.6 7.7E-12 1.7E-16 123.4 38.7 235 219-457 198-464 (625)
32 KOG2076 RNA polymerase III tra 99.6 5E-11 1.1E-15 128.9 47.5 441 78-520 152-694 (895)
33 KOG4422 Uncharacterized conser 99.6 6.9E-12 1.5E-16 123.7 34.1 361 78-457 192-592 (625)
34 KOG4318 Bicoid mRNA stability 99.6 1.8E-11 4E-16 131.3 37.9 543 48-662 11-598 (1088)
35 KOG0495 HAT repeat protein [RN 99.6 2.9E-09 6.3E-14 111.0 49.2 568 66-660 254-848 (913)
36 PF13429 TPR_15: Tetratricopep 99.6 1.6E-14 3.5E-19 147.7 10.9 256 397-657 14-276 (280)
37 KOG0547 Translocase of outer m 99.5 3.5E-11 7.7E-16 121.0 31.5 213 439-657 339-565 (606)
38 KOG1155 Anaphase-promoting com 99.5 2.1E-10 4.5E-15 114.9 31.8 354 324-704 159-522 (559)
39 KOG1126 DNA-binding cell divis 99.4 1.4E-11 2.9E-16 129.2 22.7 276 375-660 334-622 (638)
40 KOG1155 Anaphase-promoting com 99.4 9.7E-10 2.1E-14 110.2 33.9 193 460-656 329-534 (559)
41 KOG1915 Cell cycle control pro 99.4 1.2E-08 2.7E-13 102.5 40.9 474 178-656 85-623 (677)
42 KOG1126 DNA-binding cell divis 99.4 2.6E-11 5.5E-16 127.2 22.4 245 405-658 333-586 (638)
43 PRK10747 putative protoheme IX 99.4 2.2E-10 4.8E-15 122.7 29.5 245 402-656 129-388 (398)
44 KOG1173 Anaphase-promoting com 99.4 8.6E-10 1.9E-14 113.5 31.5 262 390-657 243-517 (611)
45 KOG2003 TPR repeat-containing 99.4 7.4E-10 1.6E-14 110.1 29.9 201 403-609 502-708 (840)
46 TIGR00540 hemY_coli hemY prote 99.4 7.2E-10 1.6E-14 119.5 32.7 278 341-621 96-396 (409)
47 PRK10747 putative protoheme IX 99.4 5.4E-10 1.2E-14 119.8 30.0 219 372-625 165-391 (398)
48 KOG1915 Cell cycle control pro 99.3 2.2E-08 4.8E-13 100.7 36.9 383 238-660 83-502 (677)
49 TIGR00540 hemY_coli hemY prote 99.3 1.3E-09 2.7E-14 117.6 29.6 278 372-656 96-397 (409)
50 KOG2047 mRNA splicing factor [ 99.3 2.8E-07 6E-12 96.5 44.3 468 166-657 102-686 (835)
51 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.6E-16 126.5 11.7 244 372-623 20-276 (280)
52 TIGR02521 type_IV_pilW type IV 99.3 6E-10 1.3E-14 110.8 23.1 198 459-657 29-231 (234)
53 KOG4318 Bicoid mRNA stability 99.3 1.1E-07 2.5E-12 102.8 40.1 528 24-605 19-640 (1088)
54 KOG2047 mRNA splicing factor [ 99.3 1.8E-07 3.9E-12 97.9 39.8 514 77-623 114-718 (835)
55 KOG1840 Kinesin light chain [C 99.2 8.1E-09 1.8E-13 110.0 29.2 230 427-656 200-477 (508)
56 KOG4162 Predicted calmodulin-b 99.2 1E-07 2.2E-12 102.0 35.8 416 227-659 322-784 (799)
57 COG2956 Predicted N-acetylgluc 99.2 9.9E-09 2.1E-13 98.6 25.3 246 403-653 47-306 (389)
58 KOG0547 Translocase of outer m 99.2 7.5E-08 1.6E-12 97.6 32.7 219 400-625 335-567 (606)
59 KOG3616 Selective LIM binding 99.2 1.7E-06 3.7E-11 91.6 43.7 379 233-660 620-1026(1636)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.5E-16 87.1 5.2 50 94-143 1-50 (50)
61 KOG3785 Uncharacterized conser 99.2 8.9E-08 1.9E-12 92.9 31.1 195 103-305 29-228 (557)
62 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.4E-13 98.3 24.5 306 342-678 48-367 (389)
63 KOG1173 Anaphase-promoting com 99.2 4.2E-07 9.1E-12 94.1 37.5 257 324-589 239-515 (611)
64 KOG2376 Signal recognition par 99.2 1.5E-07 3.2E-12 97.9 34.1 439 173-655 19-517 (652)
65 COG3071 HemY Uncharacterized e 99.2 7.8E-08 1.7E-12 95.5 30.4 274 342-622 97-388 (400)
66 PF13041 PPR_2: PPR repeat fam 99.2 6.7E-11 1.4E-15 84.5 6.7 50 389-438 1-50 (50)
67 COG3071 HemY Uncharacterized e 99.1 2E-07 4.2E-12 92.8 31.2 280 272-589 97-387 (400)
68 KOG3616 Selective LIM binding 99.1 9E-07 1.9E-11 93.6 36.1 438 170-653 619-1129(1636)
69 KOG1174 Anaphase-promoting com 99.1 2.1E-06 4.5E-11 85.5 36.1 280 390-703 231-519 (564)
70 KOG0985 Vesicle coat protein c 99.1 7.7E-06 1.7E-10 89.9 43.4 153 492-665 1104-1256(1666)
71 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-08 4.2E-13 103.1 22.2 212 440-660 40-267 (296)
72 COG3063 PilF Tfp pilus assembl 99.1 1.3E-08 2.7E-13 93.6 18.1 161 495-660 38-204 (250)
73 KOG1174 Anaphase-promoting com 99.1 1.2E-06 2.5E-11 87.2 32.7 306 289-634 189-510 (564)
74 PRK12370 invasion protein regu 99.1 3.5E-08 7.5E-13 110.7 25.4 240 407-659 277-536 (553)
75 KOG3617 WD40 and TPR repeat-co 99.1 9.7E-06 2.1E-10 87.3 41.1 214 61-286 725-994 (1416)
76 KOG1156 N-terminal acetyltrans 99.1 2.5E-06 5.4E-11 90.0 36.2 156 141-297 17-182 (700)
77 KOG2376 Signal recognition par 99.0 4.6E-06 9.9E-11 87.1 36.4 446 103-589 19-517 (652)
78 PRK12370 invasion protein regu 99.0 3.7E-08 8E-13 110.5 23.3 210 440-657 275-501 (553)
79 KOG1840 Kinesin light chain [C 99.0 1.6E-07 3.5E-12 100.2 26.4 95 529-623 369-478 (508)
80 TIGR02521 type_IV_pilW type IV 99.0 8.8E-08 1.9E-12 95.1 23.5 200 391-626 31-234 (234)
81 KOG3785 Uncharacterized conser 99.0 5.9E-06 1.3E-10 80.6 33.8 445 138-628 29-494 (557)
82 KOG4162 Predicted calmodulin-b 99.0 3.6E-06 7.7E-11 90.6 35.4 494 107-630 238-789 (799)
83 KOG1129 TPR repeat-containing 99.0 2.1E-08 4.5E-13 96.2 15.1 231 395-660 227-460 (478)
84 KOG1127 TPR repeat-containing 98.9 1.9E-06 4.2E-11 94.7 31.5 582 46-655 475-1135(1238)
85 KOG0985 Vesicle coat protein c 98.9 0.00023 5.1E-09 78.8 48.9 279 343-655 1062-1367(1666)
86 KOG1129 TPR repeat-containing 98.9 3.7E-08 8.1E-13 94.5 15.5 195 460-660 222-426 (478)
87 KOG1156 N-terminal acetyltrans 98.9 0.00018 3.9E-09 76.4 45.5 549 77-658 53-688 (700)
88 PRK11189 lipoprotein NlpI; Pro 98.9 7.1E-07 1.5E-11 91.5 25.3 226 405-636 40-278 (296)
89 KOG1127 TPR repeat-containing 98.9 9.8E-06 2.1E-10 89.4 33.3 539 112-656 474-1102(1238)
90 KOG1125 TPR repeat-containing 98.8 1.2E-07 2.6E-12 98.6 15.8 217 438-657 297-526 (579)
91 PF12569 NARP1: NMDA receptor- 98.8 5.5E-06 1.2E-10 89.9 28.7 126 529-657 196-333 (517)
92 COG3063 PilF Tfp pilus assembl 98.8 2.3E-06 5.1E-11 79.0 21.3 192 436-631 45-243 (250)
93 KOG3617 WD40 and TPR repeat-co 98.8 2.6E-05 5.7E-10 84.1 31.4 414 163-652 723-1168(1416)
94 KOG0548 Molecular co-chaperone 98.7 5.8E-06 1.3E-10 85.6 25.7 215 430-658 228-455 (539)
95 KOG0624 dsRNA-activated protei 98.7 5.2E-05 1.1E-09 73.9 29.5 295 331-631 40-377 (504)
96 PF12569 NARP1: NMDA receptor- 98.7 9.6E-05 2.1E-09 80.4 34.8 254 394-654 197-516 (517)
97 KOG0624 dsRNA-activated protei 98.7 3.3E-05 7.2E-10 75.3 27.2 289 365-659 43-371 (504)
98 KOG0548 Molecular co-chaperone 98.7 4.9E-05 1.1E-09 79.0 29.9 238 366-642 230-473 (539)
99 PF04733 Coatomer_E: Coatomer 98.7 7.3E-07 1.6E-11 90.0 16.4 126 529-657 133-264 (290)
100 cd05804 StaR_like StaR_like; a 98.6 5.3E-05 1.2E-09 80.7 30.4 257 399-659 51-337 (355)
101 KOG4340 Uncharacterized conser 98.6 4.2E-05 9.1E-10 73.1 25.4 309 99-451 13-335 (459)
102 TIGR03302 OM_YfiO outer membra 98.6 3.3E-06 7.1E-11 84.0 18.8 179 460-658 32-232 (235)
103 KOG4340 Uncharacterized conser 98.6 9.4E-05 2E-09 70.8 26.0 277 372-657 124-442 (459)
104 PF04733 Coatomer_E: Coatomer 98.6 2.1E-06 4.5E-11 86.8 16.2 247 372-629 13-270 (290)
105 PRK04841 transcriptional regul 98.6 0.0014 3.1E-08 79.4 43.8 250 306-555 464-759 (903)
106 PRK15359 type III secretion sy 98.5 1.9E-06 4.2E-11 77.5 13.9 121 513-640 14-137 (144)
107 PRK15359 type III secretion sy 98.5 3E-06 6.5E-11 76.3 14.6 108 548-660 14-123 (144)
108 PRK04841 transcriptional regul 98.5 0.00046 9.9E-09 83.7 37.5 257 370-657 462-759 (903)
109 PRK10370 formate-dependent nit 98.5 6.2E-06 1.4E-10 78.6 16.8 118 540-660 52-175 (198)
110 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.2E-12 59.7 3.9 33 161-193 2-34 (34)
111 PRK15363 pathogenicity island 98.4 5E-06 1.1E-10 73.3 13.0 96 563-658 35-132 (157)
112 PF12854 PPR_1: PPR repeat 98.4 4.5E-07 9.8E-12 57.9 4.2 33 355-387 2-34 (34)
113 KOG1914 mRNA cleavage and poly 98.4 0.0048 1E-07 64.5 37.5 172 407-580 347-527 (656)
114 cd05804 StaR_like StaR_like; a 98.4 0.00066 1.4E-08 72.3 31.1 265 391-658 6-293 (355)
115 PRK15179 Vi polysaccharide bio 98.4 2.1E-05 4.5E-10 88.8 19.9 135 491-630 85-223 (694)
116 KOG1070 rRNA processing protei 98.4 3.3E-05 7.1E-10 88.3 20.9 200 458-661 1455-1666(1710)
117 COG5010 TadD Flp pilus assembl 98.3 3E-05 6.5E-10 73.5 16.2 136 523-660 62-199 (257)
118 PRK10370 formate-dependent nit 98.3 5.5E-05 1.2E-09 72.1 18.2 156 468-635 23-184 (198)
119 PLN02789 farnesyltranstransfer 98.3 0.0002 4.2E-09 73.5 23.3 223 393-656 39-300 (320)
120 KOG1125 TPR repeat-containing 98.3 6.1E-05 1.3E-09 78.9 19.5 249 371-649 296-562 (579)
121 KOG1128 Uncharacterized conser 98.3 0.0015 3.3E-08 70.6 30.1 211 361-589 399-613 (777)
122 TIGR03302 OM_YfiO outer membra 98.3 5.9E-05 1.3E-09 75.0 18.6 184 424-627 31-235 (235)
123 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.4E-10 70.5 13.3 101 559-659 12-115 (135)
124 KOG1128 Uncharacterized conser 98.2 4.3E-05 9.3E-10 82.1 15.3 116 540-658 498-616 (777)
125 COG4783 Putative Zn-dependent 98.2 0.00044 9.6E-09 71.4 21.5 146 492-659 306-455 (484)
126 KOG1070 rRNA processing protei 98.1 0.0006 1.3E-08 78.5 23.9 216 326-542 1455-1686(1710)
127 PRK15179 Vi polysaccharide bio 98.1 0.00029 6.3E-09 79.7 21.4 141 457-602 82-229 (694)
128 COG5010 TadD Flp pilus assembl 98.1 0.00023 5E-09 67.6 17.1 153 465-621 70-228 (257)
129 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.1E-10 54.0 4.6 35 260-294 1-35 (35)
130 KOG1914 mRNA cleavage and poly 98.1 0.025 5.5E-07 59.4 37.4 210 443-655 310-536 (656)
131 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.6E-10 53.2 4.3 35 97-131 1-35 (35)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.3E-05 1.8E-09 77.7 13.9 121 531-656 173-295 (395)
133 PLN02789 farnesyltranstransfer 98.0 0.00068 1.5E-08 69.6 20.1 184 469-657 45-249 (320)
134 COG4783 Putative Zn-dependent 98.0 0.00052 1.1E-08 71.0 18.8 119 536-657 315-436 (484)
135 PRK14720 transcript cleavage f 98.0 0.0019 4.1E-08 74.0 24.4 42 598-639 226-267 (906)
136 TIGR02552 LcrH_SycD type III s 98.0 0.00018 3.9E-09 64.3 13.5 114 514-632 5-122 (135)
137 PRK14720 transcript cleavage f 97.9 0.0036 7.8E-08 71.8 25.9 234 328-606 30-268 (906)
138 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4E-10 50.9 4.2 34 96-129 1-34 (34)
139 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 50.8 4.2 34 259-292 1-34 (34)
140 KOG3081 Vesicle coat complex C 97.9 0.012 2.6E-07 56.2 23.3 71 578-648 188-260 (299)
141 KOG3060 Uncharacterized conser 97.8 0.0044 9.5E-08 58.6 20.3 159 472-633 63-229 (289)
142 KOG3060 Uncharacterized conser 97.8 0.0012 2.7E-08 62.2 16.6 183 474-660 25-222 (289)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00051 1.1E-08 71.9 15.8 125 464-593 172-298 (395)
144 PF09976 TPR_21: Tetratricopep 97.8 0.00051 1.1E-08 62.1 13.8 114 540-654 24-143 (145)
145 cd00189 TPR Tetratricopeptide 97.8 0.00019 4E-09 59.1 10.3 92 566-657 3-96 (100)
146 KOG0553 TPR repeat-containing 97.8 0.00015 3.2E-09 70.3 10.3 99 537-638 91-192 (304)
147 PF12895 Apc3: Anaphase-promot 97.8 2.8E-05 6E-10 62.7 4.5 78 576-654 2-83 (84)
148 PF13414 TPR_11: TPR repeat; P 97.8 5.6E-05 1.2E-09 58.3 5.9 64 594-657 2-66 (69)
149 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00036 7.8E-09 60.6 11.0 91 568-658 7-105 (119)
150 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.5E-10 47.9 3.6 31 260-290 1-31 (31)
151 PLN03088 SGT1, suppressor of 97.7 0.0005 1.1E-08 72.4 13.1 98 535-635 10-110 (356)
152 KOG3081 Vesicle coat complex C 97.7 0.0039 8.4E-08 59.4 17.3 187 467-660 47-238 (299)
153 PRK10153 DNA-binding transcrip 97.7 0.0015 3.2E-08 71.9 17.0 139 490-630 335-488 (517)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00079 1.7E-08 58.4 12.2 104 529-632 4-113 (119)
155 PF09976 TPR_21: Tetratricopep 97.7 0.0019 4.2E-08 58.3 15.0 124 495-622 15-145 (145)
156 PF13432 TPR_16: Tetratricopep 97.6 0.00012 2.6E-09 55.6 5.9 59 601-659 3-61 (65)
157 PF01535 PPR: PPR repeat; Int 97.6 6.1E-05 1.3E-09 47.2 3.5 31 97-127 1-31 (31)
158 KOG2053 Mitochondrial inherita 97.6 0.2 4.3E-06 56.2 38.1 159 494-656 438-606 (932)
159 KOG2053 Mitochondrial inherita 97.6 0.22 4.7E-06 56.0 38.3 206 43-256 25-254 (932)
160 PRK15331 chaperone protein Sic 97.6 0.0014 3.1E-08 58.3 12.0 90 568-657 42-133 (165)
161 KOG2041 WD40 repeat protein [G 97.6 0.19 4.1E-06 54.5 30.8 230 163-418 689-950 (1189)
162 PRK02603 photosystem I assembl 97.5 0.002 4.4E-08 60.2 13.7 129 492-644 35-166 (172)
163 PRK02603 photosystem I assembl 97.5 0.0008 1.7E-08 62.9 10.9 82 563-644 35-121 (172)
164 PLN03088 SGT1, suppressor of 97.5 0.0011 2.3E-08 69.9 12.9 100 498-602 8-110 (356)
165 CHL00033 ycf3 photosystem I as 97.5 0.00066 1.4E-08 63.2 10.3 93 563-655 35-139 (168)
166 PF13432 TPR_16: Tetratricopep 97.5 0.00031 6.8E-09 53.3 5.9 61 569-629 3-65 (65)
167 KOG0553 TPR repeat-containing 97.4 0.00099 2.2E-08 64.7 10.2 89 570-658 88-178 (304)
168 COG4235 Cytochrome c biogenesi 97.4 0.0012 2.7E-08 64.5 10.7 107 560-666 152-264 (287)
169 cd00189 TPR Tetratricopeptide 97.4 0.0019 4.1E-08 52.9 10.3 61 566-626 37-99 (100)
170 PF05843 Suf: Suppressor of fo 97.4 0.0057 1.2E-07 62.0 15.3 134 494-630 3-142 (280)
171 KOG0550 Molecular chaperone (D 97.3 0.0018 3.8E-08 65.4 10.4 153 501-659 178-351 (486)
172 PRK10153 DNA-binding transcrip 97.3 0.0071 1.5E-07 66.5 16.4 135 522-660 332-484 (517)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.28 6.1E-06 50.6 27.7 369 59-436 39-545 (660)
174 PF14559 TPR_19: Tetratricopep 97.2 0.00037 7.9E-09 53.5 4.0 53 606-658 2-54 (68)
175 PF13371 TPR_9: Tetratricopept 97.2 0.00095 2E-08 52.0 6.4 59 602-660 2-60 (73)
176 COG3898 Uncharacterized membra 97.2 0.3 6.4E-06 49.5 25.7 241 403-657 132-391 (531)
177 PF14559 TPR_19: Tetratricopep 97.2 0.00053 1.2E-08 52.5 4.3 60 576-635 4-65 (68)
178 PF12895 Apc3: Anaphase-promot 97.2 0.0009 2E-08 53.8 5.8 80 505-588 2-83 (84)
179 CHL00033 ycf3 photosystem I as 97.2 0.0079 1.7E-07 56.0 12.9 80 492-574 35-117 (168)
180 PRK10866 outer membrane biogen 97.1 0.071 1.5E-06 52.7 19.9 173 467-656 38-239 (243)
181 PF13431 TPR_17: Tetratricopep 97.1 0.00031 6.7E-09 44.8 2.1 33 618-650 2-34 (34)
182 KOG1130 Predicted G-alpha GTPa 97.1 0.0029 6.3E-08 63.6 9.8 256 401-657 27-343 (639)
183 PF14938 SNAP: Soluble NSF att 97.1 0.23 5E-06 50.6 23.7 97 494-590 157-264 (282)
184 PRK10803 tol-pal system protei 97.1 0.0046 9.9E-08 61.5 10.7 92 566-657 146-245 (263)
185 COG3898 Uncharacterized membra 97.0 0.17 3.6E-06 51.3 21.0 181 474-660 97-294 (531)
186 PF14938 SNAP: Soluble NSF att 97.0 0.061 1.3E-06 54.8 19.0 116 499-629 101-230 (282)
187 COG4700 Uncharacterized protei 97.0 0.14 3E-06 46.3 18.1 132 523-657 85-221 (251)
188 PF13414 TPR_11: TPR repeat; P 97.0 0.0013 2.9E-08 50.5 5.0 64 563-626 3-69 (69)
189 KOG1538 Uncharacterized conser 97.0 0.054 1.2E-06 58.0 17.7 90 304-420 757-846 (1081)
190 PF07079 DUF1347: Protein of u 96.9 0.71 1.5E-05 48.0 33.6 113 77-193 18-155 (549)
191 PRK15363 pathogenicity island 96.9 0.019 4.1E-07 51.1 11.8 52 500-553 43-95 (157)
192 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.004 8.7E-08 64.9 8.7 65 594-658 74-141 (453)
193 PF07079 DUF1347: Protein of u 96.9 0.74 1.6E-05 47.9 36.6 116 537-656 389-522 (549)
194 PF12688 TPR_5: Tetratrico pep 96.9 0.012 2.6E-07 50.4 10.2 87 569-655 7-101 (120)
195 COG4700 Uncharacterized protei 96.8 0.026 5.6E-07 50.8 12.1 108 552-659 78-190 (251)
196 PF04840 Vps16_C: Vps16, C-ter 96.8 0.77 1.7E-05 47.2 29.4 105 468-589 184-288 (319)
197 PF13281 DUF4071: Domain of un 96.8 0.15 3.3E-06 52.8 19.1 160 467-629 147-339 (374)
198 PF13371 TPR_9: Tetratricopept 96.7 0.0044 9.6E-08 48.1 6.3 65 570-634 2-68 (73)
199 PF12688 TPR_5: Tetratrico pep 96.7 0.038 8.2E-07 47.4 12.3 92 497-588 6-100 (120)
200 KOG1538 Uncharacterized conser 96.7 0.27 5.8E-06 52.9 20.4 68 298-386 602-671 (1081)
201 PF13428 TPR_14: Tetratricopep 96.7 0.0025 5.4E-08 43.7 3.9 42 596-637 2-43 (44)
202 PF05843 Suf: Suppressor of fo 96.7 0.02 4.4E-07 58.1 12.0 129 528-658 2-136 (280)
203 PF08579 RPM2: Mitochondrial r 96.6 0.027 5.8E-07 46.4 10.0 81 393-473 27-116 (120)
204 KOG2796 Uncharacterized conser 96.6 0.26 5.7E-06 47.1 17.8 136 394-531 180-323 (366)
205 KOG2280 Vacuolar assembly/sort 96.6 1.6 3.4E-05 48.4 31.3 86 199-284 439-532 (829)
206 PF10037 MRP-S27: Mitochondria 96.6 0.02 4.3E-07 60.5 11.7 123 352-474 58-186 (429)
207 PF08579 RPM2: Mitochondrial r 96.5 0.03 6.4E-07 46.2 9.6 81 98-178 27-116 (120)
208 PRK10803 tol-pal system protei 96.5 0.032 7E-07 55.5 12.1 102 529-630 145-252 (263)
209 KOG2280 Vacuolar assembly/sort 96.5 1.8 4E-05 47.9 26.9 330 124-483 425-792 (829)
210 PF06239 ECSIT: Evolutionarily 96.5 0.017 3.8E-07 53.8 9.3 89 489-578 44-153 (228)
211 PF10037 MRP-S27: Mitochondria 96.5 0.074 1.6E-06 56.3 15.0 120 421-540 61-186 (429)
212 KOG2796 Uncharacterized conser 96.5 0.18 3.8E-06 48.3 15.7 169 464-632 139-323 (366)
213 PF04840 Vps16_C: Vps16, C-ter 96.5 1.3 2.8E-05 45.6 31.2 107 362-484 179-285 (319)
214 KOG0543 FKBP-type peptidyl-pro 96.3 0.049 1.1E-06 55.7 11.9 63 596-658 258-320 (397)
215 COG0457 NrfG FOG: TPR repeat [ 96.3 1.2 2.6E-05 43.3 26.5 194 461-658 59-265 (291)
216 KOG1941 Acetylcholine receptor 96.3 0.081 1.7E-06 52.8 12.8 193 462-654 44-271 (518)
217 PF13424 TPR_12: Tetratricopep 96.2 0.0076 1.6E-07 47.6 4.6 62 596-657 6-74 (78)
218 PF06239 ECSIT: Evolutionarily 96.2 0.048 1E-06 51.0 10.2 98 379-476 33-153 (228)
219 PRK11906 transcriptional regul 96.2 0.065 1.4E-06 56.2 12.4 78 580-657 321-400 (458)
220 PF03704 BTAD: Bacterial trans 96.2 0.098 2.1E-06 47.2 12.5 107 537-657 16-124 (146)
221 KOG1130 Predicted G-alpha GTPa 96.2 0.31 6.8E-06 49.6 16.4 90 464-553 198-301 (639)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.2 2 4.4E-05 44.6 29.7 137 492-632 397-539 (660)
223 KOG2114 Vacuolar assembly/sort 96.1 3.3 7.1E-05 46.7 25.3 142 105-257 377-519 (933)
224 PRK10866 outer membrane biogen 96.1 1.5 3.3E-05 43.3 21.0 60 394-455 35-98 (243)
225 KOG2066 Vacuolar assembly/sort 96.0 2.9 6.2E-05 46.7 23.9 76 204-279 363-443 (846)
226 PF13424 TPR_12: Tetratricopep 96.0 0.0088 1.9E-07 47.2 4.1 60 565-624 7-75 (78)
227 KOG1258 mRNA processing protei 96.0 3.1 6.7E-05 45.2 30.7 182 459-643 295-489 (577)
228 KOG4555 TPR repeat-containing 95.9 0.08 1.7E-06 44.7 9.0 90 571-660 51-146 (175)
229 KOG0550 Molecular chaperone (D 95.8 1.7 3.6E-05 44.8 19.7 148 436-589 179-347 (486)
230 PRK11906 transcriptional regul 95.8 0.37 8.1E-06 50.8 15.7 142 508-653 274-431 (458)
231 PF13525 YfiO: Outer membrane 95.7 1.4 3.1E-05 42.2 18.8 58 398-455 12-71 (203)
232 PF13525 YfiO: Outer membrane 95.7 0.98 2.1E-05 43.3 17.5 142 497-658 10-170 (203)
233 KOG1920 IkappaB kinase complex 95.7 2.7 5.8E-05 49.3 23.0 129 242-417 894-1025(1265)
234 KOG1920 IkappaB kinase complex 95.6 3.6 7.7E-05 48.3 23.5 156 375-589 895-1052(1265)
235 KOG2041 WD40 repeat protein [G 95.4 5.3 0.00012 44.0 30.2 214 181-450 678-902 (1189)
236 PF09205 DUF1955: Domain of un 95.4 1.4 3E-05 37.6 14.7 139 504-661 14-152 (161)
237 PF12921 ATP13: Mitochondrial 95.3 0.15 3.3E-06 44.2 9.4 60 526-588 1-77 (126)
238 PF04184 ST7: ST7 protein; In 95.3 0.38 8.3E-06 50.7 13.8 193 505-713 181-384 (539)
239 KOG0543 FKBP-type peptidyl-pro 95.2 0.19 4.2E-06 51.5 11.0 137 499-657 215-354 (397)
240 KOG1941 Acetylcholine receptor 95.2 2.1 4.5E-05 43.2 17.6 189 466-654 127-356 (518)
241 COG4235 Cytochrome c biogenesi 95.2 0.56 1.2E-05 46.4 13.8 102 526-630 155-262 (287)
242 PF13512 TPR_18: Tetratricopep 95.0 0.29 6.2E-06 42.9 10.2 86 573-658 20-128 (142)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.11 2.3E-06 54.6 8.6 62 563-624 75-141 (453)
244 COG1729 Uncharacterized protei 94.9 0.19 4E-06 49.0 9.5 57 601-657 184-243 (262)
245 COG0457 NrfG FOG: TPR repeat [ 94.8 4.1 8.8E-05 39.4 25.9 195 429-627 62-268 (291)
246 PF07719 TPR_2: Tetratricopept 94.8 0.066 1.4E-06 33.9 4.5 33 596-628 2-34 (34)
247 PF00515 TPR_1: Tetratricopept 94.8 0.049 1.1E-06 34.6 3.8 33 596-628 2-34 (34)
248 PF04053 Coatomer_WDAD: Coatom 94.7 1.2 2.5E-05 48.2 16.0 129 200-353 298-426 (443)
249 KOG1585 Protein required for f 94.6 4.5 9.7E-05 38.8 18.4 194 433-653 38-251 (308)
250 COG4105 ComL DNA uptake lipopr 94.6 4.5 9.9E-05 39.3 17.8 141 494-658 36-196 (254)
251 PF13512 TPR_18: Tetratricopep 94.4 1.1 2.3E-05 39.4 12.1 112 501-629 19-133 (142)
252 PF12921 ATP13: Mitochondrial 94.4 0.11 2.4E-06 45.0 6.1 96 461-572 2-97 (126)
253 COG1729 Uncharacterized protei 94.4 0.37 8.1E-06 47.0 10.3 102 529-631 144-251 (262)
254 KOG2610 Uncharacterized conser 94.4 1.1 2.4E-05 44.6 13.4 111 475-589 117-235 (491)
255 KOG4234 TPR repeat-containing 94.3 0.3 6.5E-06 44.8 8.8 90 571-660 103-199 (271)
256 smart00299 CLH Clathrin heavy 94.2 2.8 6.2E-05 37.3 15.2 124 136-270 12-136 (140)
257 COG3118 Thioredoxin domain-con 94.1 2.5 5.5E-05 41.8 15.2 119 536-658 143-265 (304)
258 KOG3941 Intermediate in Toll s 94.1 0.29 6.4E-06 47.3 8.7 99 480-579 53-174 (406)
259 PF10300 DUF3808: Protein of u 93.7 2.8 6E-05 46.1 16.9 115 540-657 246-375 (468)
260 PF04184 ST7: ST7 protein; In 93.4 2.4 5.1E-05 45.1 14.6 101 531-631 263-382 (539)
261 PF00637 Clathrin: Region in C 93.4 0.043 9.3E-07 49.4 1.9 129 136-274 12-140 (143)
262 KOG2114 Vacuolar assembly/sort 93.3 18 0.00039 41.1 28.4 74 569-643 711-785 (933)
263 PF03704 BTAD: Bacterial trans 93.2 0.67 1.5E-05 41.7 9.4 69 495-564 65-137 (146)
264 COG3118 Thioredoxin domain-con 93.0 6.5 0.00014 39.0 15.9 153 500-655 142-299 (304)
265 PF04053 Coatomer_WDAD: Coatom 92.9 1.5 3.4E-05 47.3 12.9 134 501-660 270-404 (443)
266 KOG3941 Intermediate in Toll s 92.8 0.94 2E-05 44.0 9.7 111 378-488 52-186 (406)
267 KOG2610 Uncharacterized conser 92.6 1.1 2.4E-05 44.6 10.2 160 504-666 115-284 (491)
268 PRK15331 chaperone protein Sic 92.4 4.1 8.9E-05 36.8 12.8 84 502-589 47-131 (165)
269 COG4105 ComL DNA uptake lipopr 92.3 12 0.00025 36.5 18.6 169 471-659 44-234 (254)
270 PF10300 DUF3808: Protein of u 92.1 3.4 7.3E-05 45.4 14.6 128 494-623 231-375 (468)
271 smart00299 CLH Clathrin heavy 92.0 8.5 0.00018 34.1 16.7 42 497-539 12-53 (140)
272 PF13181 TPR_8: Tetratricopept 91.9 0.26 5.6E-06 31.1 3.5 31 597-627 3-33 (34)
273 PF02259 FAT: FAT domain; Int 91.5 20 0.00044 37.7 20.8 148 491-640 145-303 (352)
274 COG4785 NlpI Lipoprotein NlpI, 91.5 9.1 0.0002 36.0 14.0 161 492-660 99-268 (297)
275 PF13170 DUF4003: Protein of u 91.2 13 0.00029 37.8 16.7 137 407-573 78-227 (297)
276 KOG1585 Protein required for f 91.0 15 0.00034 35.3 16.7 83 99-191 34-116 (308)
277 KOG4555 TPR repeat-containing 91.0 3.9 8.5E-05 34.9 10.2 87 502-589 53-141 (175)
278 PF13176 TPR_7: Tetratricopept 90.8 0.38 8.2E-06 31.0 3.4 26 598-623 2-27 (36)
279 PF07035 Mic1: Colon cancer-as 90.5 11 0.00024 34.4 13.6 126 153-282 16-143 (167)
280 PF13428 TPR_14: Tetratricopep 89.5 0.66 1.4E-05 31.5 4.0 24 566-589 4-27 (44)
281 PF09613 HrpB1_HrpK: Bacterial 89.3 14 0.00031 33.3 13.1 93 533-628 16-110 (160)
282 PF13176 TPR_7: Tetratricopept 89.2 0.73 1.6E-05 29.7 3.8 26 631-656 1-26 (36)
283 PF13281 DUF4071: Domain of un 88.8 33 0.00073 35.9 20.5 68 369-436 150-227 (374)
284 KOG1586 Protein required for f 88.2 18 0.00038 34.7 13.4 90 539-628 85-187 (288)
285 PRK09687 putative lyase; Provi 88.1 32 0.00069 34.8 27.2 119 497-627 147-266 (280)
286 PF08631 SPO22: Meiosis protei 87.6 34 0.00074 34.6 23.3 20 603-622 254-273 (278)
287 PRK11619 lytic murein transgly 87.5 60 0.0013 37.3 32.4 125 505-636 254-383 (644)
288 PF09613 HrpB1_HrpK: Bacterial 87.4 3.3 7.3E-05 37.2 7.9 54 606-659 21-74 (160)
289 KOG4648 Uncharacterized conser 87.3 1.8 3.9E-05 43.3 6.7 94 534-630 104-200 (536)
290 COG2976 Uncharacterized protei 87.2 26 0.00055 32.7 13.5 114 510-628 70-192 (207)
291 COG4785 NlpI Lipoprotein NlpI, 87.1 5.3 0.00011 37.5 9.2 106 539-650 77-187 (297)
292 KOG0276 Vesicle coat complex C 86.9 7.1 0.00015 42.4 11.2 148 178-353 598-745 (794)
293 COG3629 DnrI DNA-binding trans 86.8 4.1 8.8E-05 40.6 9.0 76 461-536 153-236 (280)
294 PF07035 Mic1: Colon cancer-as 86.7 23 0.0005 32.3 13.1 129 318-454 18-148 (167)
295 TIGR02561 HrpB1_HrpK type III 86.6 3.8 8.2E-05 36.2 7.6 54 607-660 22-75 (153)
296 PRK10941 hypothetical protein; 86.3 6 0.00013 39.5 10.0 64 597-660 183-246 (269)
297 COG1747 Uncharacterized N-term 85.9 55 0.0012 35.3 19.6 156 393-555 68-233 (711)
298 KOG4279 Serine/threonine prote 85.7 13 0.00029 41.4 12.7 184 391-628 201-399 (1226)
299 KOG0276 Vesicle coat complex C 85.4 12 0.00025 40.9 11.9 149 473-654 598-746 (794)
300 PF10602 RPN7: 26S proteasome 84.6 18 0.00039 33.7 11.8 59 495-553 39-99 (177)
301 PF13174 TPR_6: Tetratricopept 84.5 1.6 3.5E-05 27.0 3.5 28 600-627 5-32 (33)
302 PF02259 FAT: FAT domain; Int 84.4 40 0.00087 35.4 16.3 66 593-658 144-213 (352)
303 PF14853 Fis1_TPR_C: Fis1 C-te 84.1 2.2 4.8E-05 30.3 4.2 37 599-635 5-41 (53)
304 KOG2066 Vacuolar assembly/sort 84.0 84 0.0018 35.8 28.0 169 173-361 363-537 (846)
305 TIGR02508 type_III_yscG type I 83.9 20 0.00044 29.2 9.8 59 368-429 47-105 (115)
306 PF10602 RPN7: 26S proteasome 83.6 10 0.00022 35.3 9.8 60 462-521 37-102 (177)
307 PF13374 TPR_10: Tetratricopep 83.6 2.3 4.9E-05 28.1 4.2 27 597-623 4-30 (42)
308 PF09205 DUF1955: Domain of un 83.5 29 0.00062 30.1 14.1 59 496-555 90-148 (161)
309 PF13431 TPR_17: Tetratricopep 83.3 1.9 4.2E-05 27.3 3.4 32 154-186 2-33 (34)
310 PF00637 Clathrin: Region in C 83.1 2.3 5.1E-05 38.0 5.3 83 301-386 14-96 (143)
311 PF06552 TOM20_plant: Plant sp 83.1 8.2 0.00018 35.4 8.4 45 611-655 51-99 (186)
312 PF04097 Nic96: Nup93/Nic96; 83.0 94 0.002 35.6 21.4 87 398-489 265-355 (613)
313 PF14853 Fis1_TPR_C: Fis1 C-te 82.7 8.2 0.00018 27.4 6.6 51 631-707 3-53 (53)
314 PF00515 TPR_1: Tetratricopept 82.6 2.6 5.6E-05 26.4 3.9 27 494-520 3-29 (34)
315 TIGR02508 type_III_yscG type I 82.5 13 0.00027 30.3 8.2 52 236-289 47-98 (115)
316 COG3629 DnrI DNA-binding trans 82.5 5.7 0.00012 39.6 7.9 61 597-657 155-215 (280)
317 PF06552 TOM20_plant: Plant sp 82.1 11 0.00024 34.6 8.8 44 611-661 96-139 (186)
318 PF07719 TPR_2: Tetratricopept 81.9 2.3 4.9E-05 26.6 3.4 29 630-658 2-30 (34)
319 COG4649 Uncharacterized protei 81.7 9.8 0.00021 34.5 8.2 123 98-225 61-195 (221)
320 smart00028 TPR Tetratricopepti 81.6 3 6.5E-05 24.9 4.0 31 597-627 3-33 (34)
321 COG4649 Uncharacterized protei 81.3 43 0.00093 30.5 15.8 121 502-623 68-195 (221)
322 KOG1258 mRNA processing protei 80.5 99 0.0021 34.2 32.3 136 94-232 43-186 (577)
323 KOG4648 Uncharacterized conser 80.3 8.2 0.00018 38.8 8.0 86 499-595 104-198 (536)
324 KOG4570 Uncharacterized conser 79.9 7.8 0.00017 38.6 7.6 97 355-455 59-164 (418)
325 KOG3364 Membrane protein invol 79.4 19 0.00041 31.2 8.8 65 593-657 30-99 (149)
326 PF07721 TPR_4: Tetratricopept 79.4 3.3 7.1E-05 24.3 3.2 24 630-653 2-25 (26)
327 PF13181 TPR_8: Tetratricopept 77.7 4.8 0.0001 25.1 3.9 28 630-657 2-29 (34)
328 KOG0890 Protein kinase of the 77.6 2.4E+02 0.0052 37.0 25.9 309 334-659 1388-1732(2382)
329 PRK09687 putative lyase; Provi 77.5 85 0.0018 31.8 25.7 29 257-285 66-98 (280)
330 PF10345 Cohesin_load: Cohesin 77.3 1.4E+02 0.0031 34.2 30.9 49 608-656 547-604 (608)
331 PF11207 DUF2989: Protein of u 77.3 12 0.00026 35.1 7.7 74 575-649 119-198 (203)
332 PF09986 DUF2225: Uncharacteri 76.3 13 0.00028 35.8 8.1 66 595-660 118-196 (214)
333 PF02284 COX5A: Cytochrome c o 76.2 19 0.00042 29.4 7.5 60 510-571 28-87 (108)
334 KOG1464 COP9 signalosome, subu 76.1 82 0.0018 30.9 17.7 232 372-608 39-317 (440)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 75.9 21 0.00046 28.9 7.6 62 508-571 23-84 (103)
336 KOG1586 Protein required for f 75.6 80 0.0017 30.5 15.7 59 573-631 164-231 (288)
337 KOG1550 Extracellular protein 75.4 1.5E+02 0.0033 33.5 22.6 247 401-659 259-539 (552)
338 KOG4570 Uncharacterized conser 75.3 10 0.00022 37.8 7.0 100 57-161 59-165 (418)
339 PRK11619 lytic murein transgly 75.2 1.6E+02 0.0035 33.9 36.4 209 345-566 295-514 (644)
340 KOG0376 Serine-threonine phosp 75.0 5.1 0.00011 42.4 5.3 83 574-656 15-99 (476)
341 PF04097 Nic96: Nup93/Nic96; 74.9 1.6E+02 0.0035 33.7 21.9 21 573-593 515-535 (613)
342 TIGR02561 HrpB1_HrpK type III 74.8 62 0.0013 28.8 11.7 66 538-606 21-88 (153)
343 PRK15180 Vi polysaccharide bio 74.2 47 0.001 35.3 11.7 50 538-589 334-383 (831)
344 PF13374 TPR_10: Tetratricopep 73.5 7.1 0.00015 25.6 4.1 27 494-520 4-30 (42)
345 COG3947 Response regulator con 73.4 11 0.00025 37.1 6.7 60 598-657 282-341 (361)
346 PF13174 TPR_6: Tetratricopept 73.1 4.6 9.9E-05 24.8 2.9 28 631-658 2-29 (33)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 70.9 23 0.00051 28.7 6.8 59 114-174 25-84 (103)
348 KOG0890 Protein kinase of the 70.8 3.5E+02 0.0075 35.7 30.9 108 203-315 1389-1504(2382)
349 KOG4507 Uncharacterized conser 70.3 11 0.00023 41.0 6.2 98 538-638 618-719 (886)
350 COG4455 ImpE Protein of avirul 70.3 17 0.00037 34.4 6.8 65 566-630 4-70 (273)
351 PF04190 DUF410: Protein of un 70.3 1.2E+02 0.0026 30.3 15.9 83 327-420 88-170 (260)
352 KOG3824 Huntingtin interacting 70.0 9.1 0.0002 37.9 5.3 50 606-655 127-176 (472)
353 PF04910 Tcf25: Transcriptiona 69.7 1.5E+02 0.0033 31.2 18.2 90 534-627 110-225 (360)
354 KOG4642 Chaperone-dependent E3 69.4 12 0.00026 35.9 5.8 65 591-655 39-104 (284)
355 KOG3807 Predicted membrane pro 69.3 51 0.0011 33.3 10.2 21 613-633 380-400 (556)
356 KOG1308 Hsp70-interacting prot 69.0 3.7 8E-05 41.4 2.5 86 576-661 127-214 (377)
357 PF07721 TPR_4: Tetratricopept 68.0 9.3 0.0002 22.3 3.2 22 169-190 4-25 (26)
358 PF14561 TPR_20: Tetratricopep 67.9 12 0.00026 30.2 4.9 44 615-658 8-51 (90)
359 KOG0545 Aryl-hydrocarbon recep 67.9 45 0.00097 32.3 9.1 56 603-658 238-293 (329)
360 PF11207 DUF2989: Protein of u 67.8 39 0.00085 31.8 8.7 74 509-583 123-198 (203)
361 PF10579 Rapsyn_N: Rapsyn N-te 65.9 13 0.00029 28.7 4.4 47 539-585 18-65 (80)
362 KOG4234 TPR repeat-containing 65.7 58 0.0013 30.5 9.1 62 571-632 142-205 (271)
363 PF08631 SPO22: Meiosis protei 65.3 1.6E+02 0.0035 29.8 23.3 62 494-557 86-151 (278)
364 KOG1464 COP9 signalosome, subu 64.1 1.5E+02 0.0032 29.2 11.9 183 474-656 40-259 (440)
365 PF02284 COX5A: Cytochrome c o 63.2 32 0.0007 28.2 6.2 60 114-174 28-87 (108)
366 KOG1550 Extracellular protein 63.2 2.2E+02 0.0047 32.3 15.5 82 578-661 343-429 (552)
367 KOG1498 26S proteasome regulat 63.1 2E+02 0.0043 30.1 18.4 194 458-680 49-263 (439)
368 PRK15180 Vi polysaccharide bio 62.9 52 0.0011 35.0 9.4 130 472-604 300-434 (831)
369 PF13170 DUF4003: Protein of u 61.2 2E+02 0.0043 29.4 16.0 53 509-561 79-137 (297)
370 COG2909 MalT ATP-dependent tra 61.1 3.3E+02 0.0072 32.0 23.5 219 401-620 425-684 (894)
371 PRK12798 chemotaxis protein; R 59.2 2.5E+02 0.0054 29.9 24.4 179 474-655 125-321 (421)
372 cd08819 CARD_MDA5_2 Caspase ac 58.3 31 0.00068 27.3 5.3 38 240-278 48-85 (88)
373 TIGR03504 FimV_Cterm FimV C-te 58.0 20 0.00042 24.4 3.7 27 633-659 3-29 (44)
374 COG4976 Predicted methyltransf 57.9 15 0.00032 35.0 4.1 58 572-629 4-63 (287)
375 PF09670 Cas_Cas02710: CRISPR- 57.1 1.4E+02 0.003 31.8 11.9 52 503-555 142-197 (379)
376 smart00386 HAT HAT (Half-A-TPR 57.0 18 0.00039 21.8 3.4 28 609-636 1-28 (33)
377 KOG2034 Vacuolar sorting prote 56.9 3.8E+02 0.0083 31.4 23.6 86 205-295 366-451 (911)
378 PF14561 TPR_20: Tetratricopep 55.8 95 0.0021 25.0 8.1 62 594-655 21-85 (90)
379 TIGR03504 FimV_Cterm FimV C-te 55.6 20 0.00043 24.3 3.4 25 265-289 5-29 (44)
380 PRK10941 hypothetical protein; 55.3 74 0.0016 31.9 8.9 68 567-634 185-254 (269)
381 PF12862 Apc5: Anaphase-promot 54.5 36 0.00078 27.7 5.6 52 606-657 9-69 (94)
382 PF07163 Pex26: Pex26 protein; 53.4 1.1E+02 0.0023 30.5 9.2 87 398-484 90-181 (309)
383 PF07720 TPR_3: Tetratricopept 53.2 40 0.00086 21.7 4.4 30 598-627 4-35 (36)
384 PF13929 mRNA_stabil: mRNA sta 52.9 2.6E+02 0.0056 28.2 14.7 56 458-513 199-259 (292)
385 KOG0403 Neoplastic transformat 51.8 3.3E+02 0.0072 29.1 18.0 58 364-421 513-573 (645)
386 KOG0403 Neoplastic transformat 50.9 3.4E+02 0.0074 29.0 18.3 144 200-355 217-371 (645)
387 PF07163 Pex26: Pex26 protein; 50.4 1.7E+02 0.0038 29.1 10.1 88 499-589 90-184 (309)
388 PHA02875 ankyrin repeat protei 50.0 3.6E+02 0.0078 29.0 16.8 78 107-192 10-91 (413)
389 KOG3364 Membrane protein invol 50.0 84 0.0018 27.5 7.0 37 597-633 73-109 (149)
390 KOG2063 Vacuolar assembly/sort 49.8 5.2E+02 0.011 30.8 16.0 125 98-240 506-638 (877)
391 KOG0551 Hsp90 co-chaperone CNS 49.7 64 0.0014 32.8 7.2 91 565-655 83-179 (390)
392 PF13934 ELYS: Nuclear pore co 49.7 2E+02 0.0044 27.9 10.8 72 533-609 114-186 (226)
393 PF14863 Alkyl_sulf_dimr: Alky 49.6 62 0.0013 28.7 6.5 65 579-646 57-121 (141)
394 PF10366 Vps39_1: Vacuolar sor 49.1 94 0.002 26.1 7.3 27 494-520 41-67 (108)
395 KOG4642 Chaperone-dependent E3 48.0 1.8E+02 0.0038 28.4 9.4 19 498-516 50-68 (284)
396 COG1747 Uncharacterized N-term 47.5 4.2E+02 0.009 29.0 22.8 92 425-520 65-159 (711)
397 PRK13800 putative oxidoreducta 47.1 6.1E+02 0.013 30.8 26.9 93 459-555 787-880 (897)
398 KOG4521 Nuclear pore complex, 47.0 5.9E+02 0.013 31.1 15.0 82 530-611 986-1070(1480)
399 PF15469 Sec5: Exocyst complex 46.9 2.4E+02 0.0053 26.2 11.1 27 609-635 153-179 (182)
400 KOG4507 Uncharacterized conser 46.2 1.7E+02 0.0037 32.3 10.1 135 523-660 567-707 (886)
401 PF10579 Rapsyn_N: Rapsyn N-te 46.1 69 0.0015 25.0 5.3 47 504-550 18-66 (80)
402 PF10345 Cohesin_load: Cohesin 46.0 5.2E+02 0.011 29.7 32.1 19 604-622 586-604 (608)
403 COG2976 Uncharacterized protei 45.4 2.7E+02 0.0058 26.3 14.2 87 436-522 99-189 (207)
404 PRK13342 recombination factor 45.2 4.3E+02 0.0093 28.6 15.6 48 494-541 229-279 (413)
405 PF11846 DUF3366: Domain of un 45.1 60 0.0013 30.6 6.4 37 590-626 139-175 (193)
406 PF12968 DUF3856: Domain of Un 45.1 1.2E+02 0.0025 25.9 6.9 59 597-655 57-126 (144)
407 PF10366 Vps39_1: Vacuolar sor 45.0 1.2E+02 0.0027 25.4 7.4 40 243-287 28-67 (108)
408 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.6E+02 0.0034 23.6 7.1 39 473-512 48-86 (88)
409 PF11768 DUF3312: Protein of u 43.4 3.3E+02 0.0072 30.1 11.9 23 466-488 413-435 (545)
410 KOG2581 26S proteasome regulat 42.8 4.4E+02 0.0095 28.0 17.2 91 537-627 179-279 (493)
411 KOG0889 Histone acetyltransfer 42.1 1.2E+03 0.026 32.8 21.9 87 500-589 2744-2838(3550)
412 PF11846 DUF3366: Domain of un 41.4 73 0.0016 30.1 6.3 31 559-589 140-170 (193)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 41.4 1.5E+02 0.0033 25.6 7.7 44 611-654 79-124 (126)
414 PF09477 Type_III_YscG: Bacter 41.1 2.1E+02 0.0046 23.9 10.6 48 337-386 48-95 (116)
415 KOG0292 Vesicle coat complex C 40.7 1.9E+02 0.0042 33.6 9.9 157 201-387 624-780 (1202)
416 PF13762 MNE1: Mitochondrial s 40.6 2.1E+02 0.0045 25.5 8.3 80 99-178 42-127 (145)
417 PF12862 Apc5: Anaphase-promot 40.4 92 0.002 25.2 5.9 27 598-624 44-70 (94)
418 PF11663 Toxin_YhaV: Toxin wit 40.3 37 0.0008 29.5 3.5 33 107-141 106-138 (140)
419 KOG0292 Vesicle coat complex C 39.7 35 0.00076 39.2 4.1 75 533-623 626-700 (1202)
420 KOG0687 26S proteasome regulat 39.4 4.4E+02 0.0096 27.0 13.2 93 462-556 105-210 (393)
421 PF11838 ERAP1_C: ERAP1-like C 39.1 4.5E+02 0.0097 27.0 16.9 84 541-624 144-230 (324)
422 PRK13800 putative oxidoreducta 38.7 8E+02 0.017 29.8 27.1 93 525-622 754-847 (897)
423 PF06957 COPI_C: Coatomer (COP 37.8 1.1E+02 0.0024 32.7 7.4 43 586-628 289-333 (422)
424 COG2912 Uncharacterized conser 37.7 1.9E+02 0.004 28.9 8.3 61 599-659 185-245 (269)
425 PF00244 14-3-3: 14-3-3 protei 37.6 4.1E+02 0.0088 26.1 12.0 58 397-454 7-65 (236)
426 cd00280 TRFH Telomeric Repeat 36.8 1E+02 0.0022 28.6 5.8 37 601-638 117-153 (200)
427 PF11848 DUF3368: Domain of un 36.6 1E+02 0.0022 21.4 4.7 34 269-302 12-45 (48)
428 KOG4077 Cytochrome c oxidase, 36.3 2E+02 0.0043 24.9 7.0 59 510-570 67-125 (149)
429 PF11663 Toxin_YhaV: Toxin wit 36.3 40 0.00087 29.3 3.1 35 501-537 104-138 (140)
430 KOG2422 Uncharacterized conser 36.1 3.5E+02 0.0075 30.1 10.5 141 503-644 249-431 (665)
431 COG3947 Response regulator con 35.5 75 0.0016 31.7 5.2 47 139-186 287-333 (361)
432 PF11848 DUF3368: Domain of un 35.1 80 0.0017 21.8 4.0 32 107-138 13-44 (48)
433 KOG3824 Huntingtin interacting 35.0 55 0.0012 32.7 4.2 16 539-554 128-143 (472)
434 cd08326 CARD_CASP9 Caspase act 35.0 78 0.0017 25.1 4.4 58 219-276 21-78 (84)
435 PF15161 Neuropep_like: Neurop 33.8 24 0.00053 24.7 1.2 19 752-771 10-28 (65)
436 PF04910 Tcf25: Transcriptiona 33.3 6E+02 0.013 26.8 14.8 56 397-452 109-165 (360)
437 COG4455 ImpE Protein of avirul 33.3 4.5E+02 0.0098 25.3 13.0 59 494-554 3-62 (273)
438 PF13934 ELYS: Nuclear pore co 33.0 4.7E+02 0.01 25.4 11.1 90 180-271 92-184 (226)
439 PRK10564 maltose regulon perip 32.5 65 0.0014 32.4 4.4 39 261-299 259-297 (303)
440 PF09670 Cas_Cas02710: CRISPR- 32.4 3.2E+02 0.007 29.1 10.0 52 536-589 140-195 (379)
441 PF14669 Asp_Glu_race_2: Putat 32.2 4.3E+02 0.0094 24.8 14.1 90 387-486 103-206 (233)
442 COG4976 Predicted methyltransf 32.1 87 0.0019 30.1 4.8 56 605-660 5-60 (287)
443 PF08967 DUF1884: Domain of un 31.8 60 0.0013 25.2 3.1 27 688-714 7-33 (85)
444 PHA02875 ankyrin repeat protei 31.0 6.9E+02 0.015 26.8 18.4 75 143-221 11-89 (413)
445 PF14689 SPOB_a: Sensor_kinase 31.0 68 0.0015 23.7 3.3 30 258-287 22-51 (62)
446 KOG0687 26S proteasome regulat 30.8 5.4E+02 0.012 26.5 10.1 129 523-655 66-207 (393)
447 KOG4077 Cytochrome c oxidase, 30.8 2.6E+02 0.0056 24.2 6.8 47 409-455 67-113 (149)
448 PRK10564 maltose regulon perip 30.4 93 0.002 31.4 5.1 40 494-533 259-298 (303)
449 COG5159 RPN6 26S proteasome re 30.3 5.8E+02 0.012 25.7 16.1 34 265-298 9-42 (421)
450 COG4941 Predicted RNA polymera 29.1 6.6E+02 0.014 26.0 12.3 120 507-631 271-401 (415)
451 PF07575 Nucleopor_Nup85: Nup8 28.5 9.1E+02 0.02 27.4 18.3 140 512-671 390-535 (566)
452 TIGR02710 CRISPR-associated pr 28.4 6.8E+02 0.015 26.6 11.1 25 502-526 140-164 (380)
453 PF04034 DUF367: Domain of unk 28.3 3.7E+02 0.008 23.3 7.5 58 563-620 66-124 (127)
454 COG5108 RPO41 Mitochondrial DN 27.7 4.5E+02 0.0098 29.7 9.8 20 334-353 33-52 (1117)
455 KOG2908 26S proteasome regulat 27.5 6.3E+02 0.014 26.1 10.1 54 536-589 84-141 (380)
456 PF14689 SPOB_a: Sensor_kinase 27.2 1.4E+02 0.003 22.0 4.4 24 531-554 27-50 (62)
457 PF04190 DUF410: Protein of un 27.2 6.4E+02 0.014 25.2 19.9 83 459-556 88-170 (260)
458 COG0790 FOG: TPR repeat, SEL1 27.1 6.6E+02 0.014 25.3 18.7 115 542-660 128-268 (292)
459 PHA02537 M terminase endonucle 27.0 4.4E+02 0.0095 25.7 8.8 21 608-628 191-211 (230)
460 smart00777 Mad3_BUB1_I Mad3/BU 26.5 4.3E+02 0.0092 22.9 7.8 68 580-653 50-123 (125)
461 PF15015 NYD-SP12_N: Spermatog 26.4 1.5E+02 0.0032 31.4 5.7 49 601-649 234-282 (569)
462 PF04090 RNA_pol_I_TF: RNA pol 25.7 4.5E+02 0.0098 24.9 8.4 115 595-709 41-172 (199)
463 PRK13342 recombination factor 25.6 8.7E+02 0.019 26.2 16.5 45 394-438 230-277 (413)
464 KOG1308 Hsp70-interacting prot 24.7 29 0.00063 35.3 0.5 99 606-720 125-226 (377)
465 PF08225 Antimicrobial19: Pseu 24.6 47 0.001 18.1 1.0 13 758-770 9-21 (23)
466 KOG2396 HAT (Half-A-TPR) repea 24.5 9.7E+02 0.021 26.4 31.5 431 95-589 104-556 (568)
467 PF10475 DUF2450: Protein of u 24.0 3.4E+02 0.0074 27.6 8.1 52 234-287 104-155 (291)
468 PF11768 DUF3312: Protein of u 24.0 4.2E+02 0.0091 29.4 8.9 23 233-255 413-435 (545)
469 cd08332 CARD_CASP2 Caspase act 23.8 1.6E+02 0.0035 23.7 4.6 48 227-274 33-80 (90)
470 PF12069 DUF3549: Protein of u 23.8 8.4E+02 0.018 25.4 11.8 86 467-555 172-258 (340)
471 KOG2034 Vacuolar sorting prote 23.5 1.3E+03 0.028 27.4 25.5 276 335-623 364-695 (911)
472 COG5159 RPN6 26S proteasome re 23.5 7.7E+02 0.017 24.8 16.0 149 402-550 14-188 (421)
473 PF10255 Paf67: RNA polymerase 23.3 3.5E+02 0.0075 29.0 8.0 55 232-286 126-191 (404)
474 cd08326 CARD_CASP9 Caspase act 22.9 2.4E+02 0.0051 22.4 5.2 38 372-409 42-79 (84)
475 PF08311 Mad3_BUB1_I: Mad3/BUB 22.4 5.1E+02 0.011 22.4 9.2 42 510-551 81-123 (126)
476 TIGR02270 conserved hypothetic 22.4 1E+03 0.022 25.8 23.0 175 102-286 44-218 (410)
477 COG5187 RPN7 26S proteasome re 22.4 3.7E+02 0.008 27.0 7.3 28 562-589 114-141 (412)
478 COG5108 RPO41 Mitochondrial DN 22.3 3.7E+02 0.008 30.4 8.0 46 497-542 33-80 (1117)
479 PRK12356 glutaminase; Reviewed 22.0 8.3E+02 0.018 25.2 10.0 110 478-590 140-258 (319)
480 PF09477 Type_III_YscG: Bacter 22.0 4.8E+02 0.01 21.9 11.8 80 143-225 18-97 (116)
481 KOG2422 Uncharacterized conser 21.7 1.2E+03 0.025 26.3 17.3 18 467-484 290-307 (665)
482 COG0735 Fur Fe2+/Zn2+ uptake r 21.7 3.6E+02 0.0077 24.1 6.8 49 260-308 21-69 (145)
483 PRK11639 zinc uptake transcrip 21.5 3.5E+02 0.0075 24.9 6.9 41 101-141 30-70 (169)
484 PRK11639 zinc uptake transcrip 21.4 3.4E+02 0.0073 25.0 6.8 63 247-309 13-75 (169)
485 PF08424 NRDE-2: NRDE-2, neces 21.3 9.2E+02 0.02 24.9 15.8 30 632-661 157-186 (321)
486 KOG0686 COP9 signalosome, subu 21.3 1E+03 0.022 25.4 12.0 166 98-267 152-352 (466)
487 COG2178 Predicted RNA-binding 21.3 7E+02 0.015 23.5 8.7 18 640-657 132-149 (204)
488 PF07575 Nucleopor_Nup85: Nup8 21.2 1E+03 0.022 27.1 12.0 68 381-450 395-462 (566)
489 PF02847 MA3: MA3 domain; Int 21.1 2.3E+02 0.005 23.7 5.4 21 397-417 8-28 (113)
490 PF10255 Paf67: RNA polymerase 21.0 4.5E+02 0.0097 28.2 8.3 56 363-418 125-191 (404)
491 PF11817 Foie-gras_1: Foie gra 21.0 2.6E+02 0.0057 27.6 6.5 19 600-618 223-241 (247)
492 KOG0376 Serine-threonine phosp 20.8 1.9E+02 0.0041 31.2 5.4 81 471-553 14-98 (476)
493 smart00544 MA3 Domain in DAP-5 20.8 5E+02 0.011 21.6 7.5 86 261-346 4-89 (113)
494 COG5071 RPN5 26S proteasome re 20.7 8.9E+02 0.019 24.5 9.8 68 536-603 180-256 (439)
495 PF13762 MNE1: Mitochondrial s 20.4 6.2E+02 0.013 22.6 11.1 50 491-540 78-128 (145)
496 PF00244 14-3-3: 14-3-3 protei 20.4 8.2E+02 0.018 24.0 12.1 57 264-320 6-63 (236)
497 PF10475 DUF2450: Protein of u 20.0 6E+02 0.013 25.8 9.0 46 372-419 110-155 (291)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-136 Score=1204.64 Aligned_cols=761 Identities=33% Similarity=0.585 Sum_probs=739.7
Q ss_pred CCCChHHHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHH
Q 003746 26 PTINLSILETHLQKCQS---FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTM 102 (798)
Q Consensus 26 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~l 102 (798)
.+|+..++..+++.|.. +..+.++|..+++.|..+++.++|+|+. +|+ ++|++++|+++|++|++||+++||++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~--~~~-~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS--MFV-RFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--HHH-hCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 45677788888888865 7889999999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (798)
|.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..++++|..+.+.|+.||+.++|+||.+|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--
Q 003746 183 SAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPK-- 256 (798)
Q Consensus 183 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 256 (798)
++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.. ||..+|+.++.++++.|+++.|.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999964 7899999999999999999999999998864
Q ss_pred --CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHH
Q 003746 257 --KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNA 334 (798)
Q Consensus 257 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 334 (798)
||..+||+||.+|++.|++++|.++|++|. .||..+|++++.+|.+.|+.++|.+++..|.+.|+.||..+++.
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 699999999999999999999999999996 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Q 003746 335 LIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSET 410 (798)
Q Consensus 335 li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 410 (798)
++.+|++.|++++|.++++. +..++..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC
Q 003746 411 LSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490 (798)
Q Consensus 411 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 490 (798)
+.+|++|.. +++||.+||+.+|.+|++.|+++.++++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999986 6999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987899999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 571 DLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++.+|+.|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHHHhHHhhH
Q 003746 651 VRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRH 730 (798)
Q Consensus 651 ~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~h 730 (798)
+++.|+++|++|+||+|||++++++|.|.+||++||+.++|+.+|+++..+|++.||.||+...+ ++++++|+..+++|
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~h 791 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGH 791 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998877 55788899999999
Q ss_pred HHHHHHHHhhccCCCCCcEEEEcccccCcchhhHHHHHhhhcCceEEEecCCcccccCCcccCCCC
Q 003746 731 SEKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMD 796 (798)
Q Consensus 731 ~~~~a~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 796 (798)
|||||+|||||++|+|+||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 792 se~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 792 SERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred cHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-120 Score=1043.10 Aligned_cols=613 Identities=38% Similarity=0.654 Sum_probs=597.7
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003746 93 SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171 (798)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (798)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHH
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f 251 (798)
|+++|+++|++++|.++|++|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~---------------------------------------------------------- 185 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP---------------------------------------------------------- 185 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----------------------------------------------------------
Confidence 9999999998888888888877
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..+.++.++++|..+.+.|+.+|..+
T Consensus 186 ----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 186 ----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 5677788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
+|+|+++|+ ++|++++|.++|++|+++|+++||+||.+|++.|++++|+
T Consensus 262 ~n~Li~~y~-------------------------------k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 262 SCALIDMYS-------------------------------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHHHHH-------------------------------HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Confidence 999999999 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 491 (798)
++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 390 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
+|++.|++++|.+++++|+.+|+..+|++|+.+|+.+|+.+.|..+++++++++|++...|..|+++|++.|+|++|.++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHHHhHHhhHH
Q 003746 652 RGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEKETTLFRHS 731 (798)
Q Consensus 652 ~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~h~ 731 (798)
++.|+++|++|.||+|||++++++|.|.+||.+||+.++|+.+|+++..+|++.||.||+..+++|+++++++..+++||
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hs 630 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS 630 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCcEEEEcccccCcchhhHHHHHhhhcCceEEEecCCcccccCCcccCCCCCC
Q 003746 732 EKLAIAFGLITISPPNPIRIMKNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCSCMDFW 798 (798)
Q Consensus 732 ~~~a~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~w 798 (798)
||||+||||+++|+|.||||+||||||+|||+|+||||+++||+|||||.+|||||++|+|||+|||
T Consensus 631 ekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 631 EKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-78 Score=711.45 Aligned_cols=671 Identities=24% Similarity=0.328 Sum_probs=540.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003746 93 SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172 (798)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (798)
.++..++|.++.+|++.|++++|+.+|++|.+.|++|+..+|..++++|.+.+.+..|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCC----CCCchHHHHHHHHHhhcCCHHHHH
Q 003746 173 INMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMP----ERNIIASNSMIVLFGRKGNVAEAC 248 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~y~~~g~~~~A~ 248 (798)
+.+|+++|+++.|.++|++|+.||+++||++|.+|++.|++++|+++|++|. .+|..+|+.++..+++.++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 8888888888888888888888888888888888888888888888888885 356777777777777777777776
Q ss_pred HHHhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 003746 249 RLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG 324 (798)
Q Consensus 249 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 324 (798)
+++..|. .+|+.+||+||.+|++.|++++|.++|++|.. ||.++|++++.+|++.|+.++|..++..|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666654 25666777777777777777777777777643 566677777777777777777777777777777
Q ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003746 325 IECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400 (798)
Q Consensus 325 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 400 (798)
+.||..+|+.++.++++.|+++.|.+++.. +..||..+||+||.+|+++|++++|.++|++|..+|+++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 777777777777777777777777666643 5666777777777777799999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 481 LEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 481 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||.+||+.++.+|++.|+++++.+++..+.+ .|+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCC
Confidence 9999999999999999999999999999999999999986 5999999999999999999999999999999976 5999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCcchHHHHHHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNI 638 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~ 638 (798)
|+..++++|+++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|.++|++|.+ ..|+.. +|..+..+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHH
Confidence 99999999999999999999999999999 79999999999999999999999999999986 567764 57777789
Q ss_pred HHhcCChhHHHHHHHHHH-hCCCccCCccceEEECCEEEEEEeCCCCCcChHHHH---HHHHHHHHHHHHcCCCCCCccc
Q 003746 639 HASKGRWDDVLEVRGMMV-RRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEID---NMLDEMAKKLKLEGYAPDTLEV 714 (798)
Q Consensus 639 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~g~~~d~~~~ 714 (798)
|.+.|++++|.++|+.|. +.|+.+.... ....-+++ +.++++.+.+++++..||...|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 999999999999999998 6677643210 00111122 2456777777788899999988
Q ss_pred ccccChHHHHhHHhhHHHHHH-HHHhhccCCCCCcEEEEcc-cccCcchhhHHHHHhhhcCc--------eEEEecCCcc
Q 003746 715 AFDIDQEEKETTLFRHSEKLA-IAFGLITISPPNPIRIMKN-LRICNDCHTAAKFISRAFDR--------EIVVRDRHRF 784 (798)
Q Consensus 715 ~~~~~~~~~~~~~~~h~~~~a-~~~~~~~~~~~~~~~~~~n-l~~~~~~~~~~~~~s~~~~~--------~~~~~~~~~~ 784 (798)
..-+..+...+.+ .-.|+.+ ..+.+.+...+ ....+-| ....|+-.++.+.-..|..+ ..|.- .+..
T Consensus 661 ~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~-~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~ 737 (857)
T PLN03077 661 GALLNACRIHRHV-ELGELAAQHIFELDPNSVG-YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKV 737 (857)
T ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEE
Confidence 5444444322211 0111111 11222222222 2122333 34567788888887776655 22222 3567
Q ss_pred cccCCcccC
Q 003746 785 HHFKHGSCS 793 (798)
Q Consensus 785 h~~~~g~cs 793 (798)
|-|..|.-|
T Consensus 738 ~~f~~~d~~ 746 (857)
T PLN03077 738 HAFLTDDES 746 (857)
T ss_pred EEEecCCCC
Confidence 888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-66 Score=595.94 Aligned_cols=517 Identities=17% Similarity=0.224 Sum_probs=467.4
Q ss_pred CCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003746 58 LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFI-----FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132 (798)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 132 (798)
..++...+..++. .++ +.|++++|.++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..
T Consensus 366 ~~~~~~~~~~~y~--~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 366 GKRKSPEYIDAYN--RLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CCCCchHHHHHHH--HHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 3456777888888 888 8999999999999998876654 45667789999999999999999974 9999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP----VLDLVSWNSILAGYV 208 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~ 208 (798)
||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 689999999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCC------CCCcccHHHHHHHHHhcCChhHH
Q 003746 209 NADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMP------KKDLVSWSALISCYEQNEMYEEA 278 (798)
Q Consensus 209 ~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A 278 (798)
+.|++++|+++|++|.. +|..+|+.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999964 688999999999999999999999999994 47999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----
Q 003746 279 LVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---- 354 (798)
Q Consensus 279 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---- 354 (798)
.++|++|.+.|+.|+..+|++++.+|++.|+++.|..++..|.+.|+.||..+|+.++++|++.|++++|.++|+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003746 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLV 430 (798)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 430 (798)
+..||..+|++||.+|++.|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 678999999999999999999999999999994 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH----HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 003746 431 SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY----MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNG 506 (798)
Q Consensus 431 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 506 (798)
.++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..++...|+.+...+...|+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~---------- 828 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT---------- 828 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH----------
Confidence 99999999999999999999999999999999999999874 3444444444445443333444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003746 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 507 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++|+.+|++|.+.|+.||.+||+.++.++...+..+.+..+++.|.. .+..|+..+|++|++++++. .++|..++
T Consensus 829 --~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 829 --SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 56999999999999999999999999877788888888888877743 35667788999999988543 46899999
Q ss_pred HhC---CCCCCHH
Q 003746 587 ESM---PMSPDVA 596 (798)
Q Consensus 587 ~~~---~~~p~~~ 596 (798)
++| ++.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 998 6667654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-63 Score=573.37 Aligned_cols=542 Identities=18% Similarity=0.222 Sum_probs=390.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcch-----HHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHH
Q 003746 164 SDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVS-----WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF 238 (798)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y 238 (798)
++...|..++..|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+++|+.|..+|..+|+.|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555433322 233344455555555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHH
Q 003746 239 GRKGNVAEACRLFKEMP----KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314 (798)
Q Consensus 239 ~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (798)
++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 55555555555555554 24566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG------HNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 315 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
+++..|.+.|+.||..+||.||.+|++.|++++|.++|+++ ..||..+|++||.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666543 356666777777777788888888888888864
Q ss_pred ----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHH
Q 003746 389 ----KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464 (798)
Q Consensus 389 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (798)
++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTE----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
++||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999885 5788899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---CCCCC
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG----RAG-------------------MLKEAEELIESM---PMSPD 594 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~ 594 (798)
|++++|.++|++|.+ .|+.||..+|++|++++. +++ ..++|..+|++| ++.||
T Consensus 768 G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999965 589999999999987643 222 346799999999 78899
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCccCCccceEEEC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKGRW-DDVLEVRGMMVRRGVVKIPGCSMIEAN 672 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~s~i~~~ 672 (798)
..+|+.++.++.+.+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.+.........-
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~ 923 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSFKKSPIV 923 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcccccCceE
Confidence 99999999887888888888888877642 2344556777777765 443 689999999999999765432111222
Q ss_pred CEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcc
Q 003746 673 GIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLE 713 (798)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~ 713 (798)
-+++.|..|.. -.-+..+|..+.+.....--.|.-..
T Consensus 924 ~d~~~~~~~aa----~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 924 IDAEELPVFAA----EVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred EEcccCcchhH----HHHHHHHHHHHHHHHhccCcCCccee
Confidence 23344443321 12233556666666543224455444
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-63 Score=573.83 Aligned_cols=462 Identities=19% Similarity=0.321 Sum_probs=423.3
Q ss_pred CCCchhhhhhccccccCccCCCChhHHHHhhhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003746 58 LIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES-----PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNY 132 (798)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 132 (798)
...+...+++++. .|. +.|++++|..+|+.|.. ||..+|+.++.++.+.++++.|.+++..|.+.|+.||..
T Consensus 83 ~~~~~~~~~~~i~--~l~-~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIE--KLV-ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHH--HHH-cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4456678999999 999 99999999999999853 788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP----VLDLVSWNSILAGYV 208 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~ 208 (798)
+|+.++.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|. .||..+|+.++.+++
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999999999999995 5899999999999999999999999999985 678899999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 003746 209 NADNVEEAKFIYNKMPE----RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284 (798)
Q Consensus 209 ~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 284 (798)
+.|..+.+.+++..+.+ +|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999887754 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHH
Q 003746 285 MIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWN 364 (798)
Q Consensus 285 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (798)
|.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~------------------------ 371 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS------------------------ 371 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++
T Consensus 372 -------k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 372 -------KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred -------HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 445 GKWIHAYIRK-NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 445 a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ .++..+|++|+.+|..+|+.+.|..+++++.+
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9999999986 5999999999999999999999999999998886 45677777777777777777777777777754
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 523 VTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 523 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
+.|+ ..+|..++..|++.|++++|.++++.|.+ .|+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~ 560 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLS 560 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCc
Confidence 4454 34677777777777777777777777754 3553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-33 Score=336.92 Aligned_cols=606 Identities=12% Similarity=0.035 Sum_probs=429.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC--CC-cchHHHHHHHHHcCCCchHHH
Q 003746 40 CQSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES--PN-GFIFNTMMRAYIQRNVPQQAI 116 (798)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 116 (798)
......+...+..+.+.........+ .... .+. ..|++++|...|+...+ |+ ...+..+...+...|++++|.
T Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKAPNSPLAHY-LKAL--VDF-QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHH-HHHH--HHH-HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Confidence 34477777777777765433222221 1122 333 57888888888877643 22 234445556677788888888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--
Q 003746 117 CLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV-- 194 (798)
Q Consensus 117 ~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 194 (798)
..|+++.... +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++..
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 393 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888877653 3344556666777778888888888888887765 55677778888888888888888888876552
Q ss_pred -CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHH
Q 003746 195 -LDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALIS 267 (798)
Q Consensus 195 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 267 (798)
.+...|..+...+...|++++|++.|+++... +......++..|.+.|++++|.++++++.. .+..+|+.+..
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 473 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34456777777788888888888888777643 234556677778888888888888877653 35567788888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHH
Q 003746 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347 (798)
Q Consensus 268 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 347 (798)
.+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|...+..+.+.. +.+..++..+...|.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877632 1223445556666777788888888888777654 4456677777888888888888
Q ss_pred HHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 348 AEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 348 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
|...|++. .+.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++....
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88887763 334455677777788888888888888877743 356678888888888888888888888777643
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 003746 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNAL 498 (798)
Q Consensus 422 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 498 (798)
+.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+. +...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 2345566667777777888888888887777653 335667777777888888888888888777643 34567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 77777888888888888887774 455566667777777788888888887777653 23356677777777888888
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.++|.+.|+++ . .+++..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887776 2 23456677777777777777 667777777777777777777777777777788888887777777
Q ss_pred hCCC
Q 003746 657 RRGV 660 (798)
Q Consensus 657 ~~~~ 660 (798)
+.+.
T Consensus 865 ~~~~ 868 (899)
T TIGR02917 865 NIAP 868 (899)
T ss_pred hhCC
Confidence 6554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-33 Score=334.00 Aligned_cols=603 Identities=13% Similarity=0.034 Sum_probs=496.2
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHH
Q 003746 41 QSFKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAIC 117 (798)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (798)
.....+...+...++... .++.++..+.. .+. ..|++++|...|+.+.+ .+...+......+.+.|++++|+.
T Consensus 207 g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~--~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 282 (899)
T TIGR02917 207 GNIELALAAYRKAIALRP-NNPAVLLALAT--ILI-EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE 282 (899)
T ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHH--HHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 447888888888776643 35566677777 777 88999999999988743 233344444555678899999999
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---
Q 003746 118 LYKLMLNNNVGVD-NYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP--- 193 (798)
Q Consensus 118 ~~~~m~~~g~~~~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--- 193 (798)
.|+++.+.+ |+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...+.+.|++++|...++.+.
T Consensus 283 ~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 359 (899)
T TIGR02917 283 TLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD 359 (899)
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988754 33 2234445556778899999999999998876 5667788889999999999999999998765
Q ss_pred CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCC---CcccHHHHHH
Q 003746 194 VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKK---DLVSWSALIS 267 (798)
Q Consensus 194 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 267 (798)
..+...|+.+...+.+.|++++|.++|+++.+. +...+..+...|...|++++|.+.|+.+.+. +...+..++.
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 335567888899999999999999999987653 4567788888999999999999999887642 3456777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHH
Q 003746 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITT 347 (798)
Q Consensus 268 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 347 (798)
.+.+.|++++|+++++++... .+++..++..+...+...|+.+.|...+..+.+.. +.+...+..+...|.+.|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 34466788888888999999999999999988764 4456677888999999999999
Q ss_pred HHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 348 AEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 348 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
|.+.|++. .+.+..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++....
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999873 345677888999999999999999999998843 356678889999999999999999999998653
Q ss_pred CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 003746 422 IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNAL 498 (798)
Q Consensus 422 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 498 (798)
+.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+. +..+|..+
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5567788889999999999999999999998765 345677888999999999999999999887643 46789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
+..+...|++++|.++++.+.+.+ .++...+..+...+...|++++|.+.|+++.+ ..|+...+..++..|.+.|+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCC
Confidence 999999999999999999998864 44556777888889999999999999999876 45666788889999999999
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+++|.+.++++ ..+.+..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ ++|.++++++.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 99999999887 2334678889999999999999999999999999999999999999999999999 88999999887
Q ss_pred hCC
Q 003746 657 RRG 659 (798)
Q Consensus 657 ~~~ 659 (798)
+..
T Consensus 831 ~~~ 833 (899)
T TIGR02917 831 KLA 833 (899)
T ss_pred hhC
Confidence 653
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=4.9e-31 Score=222.54 Aligned_cols=106 Identities=64% Similarity=1.088 Sum_probs=96.7
Q ss_pred ccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCCCCCcccccccChHHH--------HhHHhhHHHHHHH
Q 003746 665 GCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYAPDTLEVAFDIDQEEK--------ETTLFRHSEKLAI 736 (798)
Q Consensus 665 ~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 736 (798)
||||+++ |.|.+||.+||+. ++..++...||.|++....++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899988 9999999999988 455667788999999999888877655 5688999999999
Q ss_pred HHhhccCCCCCcEEEEccc-ccCcchhhHHHHHhhhcCceEEEecCCcccccC
Q 003746 737 AFGLITISPPNPIRIMKNL-RICNDCHTAAKFISRAFDREIVVRDRHRFHHFK 788 (798)
Q Consensus 737 ~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 788 (798)
||||+++ +|+||+ |||+|||+|+|+||+++||+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.5e-24 Score=257.04 Aligned_cols=599 Identities=11% Similarity=0.038 Sum_probs=443.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC--CCcc-hH----------------HHHH
Q 003746 43 FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES--PNGF-IF----------------NTMM 103 (798)
Q Consensus 43 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~--~~~~-~~----------------~~li 103 (798)
.+.+++....+...-. .++.++..+.. .+. ..|+.++|.+.+++..+ |+.. .+ -.+.
T Consensus 44 ~d~a~~~l~kl~~~~p-~~p~~~~~~~~--~~l-~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 44 EDLVRQSLYRLELIDP-NNPDVIAARFR--LLL-RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hHHHHHHHHHHHccCC-CCHHHHHHHHH--HHH-hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 6777777776655432 25666667777 677 89999999999998755 4332 22 2334
Q ss_pred HHHHcCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 003746 104 RAYIQRNVPQQAICLYKLMLNNNVGVDNYT-YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDL 182 (798)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (798)
..+.+.|++++|+..|+++.... +|+... ...........++.++|...++.+++.. +.+...+..+..++...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998653 333321 1111222334689999999999999986 66788899999999999999
Q ss_pred HHHHHHHccCCCCCc------chHHH-----------------HHHHHHhCCCHHHHHHHHhhCCC--CCch-HHHHHHH
Q 003746 183 SAARKLFDESPVLDL------VSWNS-----------------ILAGYVNADNVEEAKFIYNKMPE--RNII-ASNSMIV 236 (798)
Q Consensus 183 ~~A~~~f~~~~~~d~------~~~~~-----------------li~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~ 236 (798)
++|+..|+++..... ..|.. .+..+-.....+.|...+.++.. .++. ....+..
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998753211 11111 11111112223445555544322 1221 2234466
Q ss_pred HHhhcCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHH------------HH
Q 003746 237 LFGRKGNVAEACRLFKEMPK--K-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVV------------SV 300 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~l 300 (798)
.+...|++++|+..|++..+ | |...+..|...|.+.|++++|+..|++..+....... ..+. ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 78889999999999998754 3 6778999999999999999999999998875422211 1111 11
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVE 377 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 377 (798)
-..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|++.|++.. +.+...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 234567899999999999999874 4456778889999999999999999999843 344556777777774 56789
Q ss_pred HHHHHHHhcCCCC------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccchhH
Q 003746 378 KARALFDAMIEKD------------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 378 ~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~ 444 (798)
+|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999998876432 223556677888999999999999999875 45 45566778888999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC----c---------chHHHHHHHHHHcCChHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG----V---------SSWNALIIGFAMNGLADKS 511 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A 511 (798)
|...++.+++... .+...+..+...+.+.|+.++|...++.++... . ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999987643 344444555566788999999999999886432 1 1123456778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+++++. .+++...+..+...+.+.|+.++|+..|+++++ ..| +...+..++.+|...|++++|++.++..
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999872 234445677788899999999999999999986 356 4788899999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh-CCC
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG------FHVLLSNIHASKGRWDDVLEVRGMMVR-RGV 660 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~ 660 (798)
...| +..++..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|.+.++.... .|+
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3444 4667888899999999999999999999998776543 555678999999999999999988753 344
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.4e-23 Score=249.85 Aligned_cols=570 Identities=11% Similarity=0.024 Sum_probs=425.0
Q ss_pred CCCChhHHHHhhhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH-----------------HH
Q 003746 77 PFIEMSYSFKIFAFLE---SPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-----------------PL 136 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~-----------------~~ 136 (798)
..++.+.|++.++++. +.|...+..++..+.+.|+.++|...+++..+.. |+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHH
Confidence 6788899988888753 3567788999999999999999999999998764 444332 22
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCC
Q 003746 137 LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN-TLINMYAVCGDLSAARKLFDESPV---LDLVSWNSILAGYVNADN 212 (798)
Q Consensus 137 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~ 212 (798)
..+.+...|++++|.+.++.+++.. +++..... .+.......|+.++|++.|+++.. .+...+..+...+.+.|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3345788899999999999998765 44432211 122223345999999999998773 245578888899999999
Q ss_pred HHHHHHHHhhCCCCCch-----------------------HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcc-cHHHHH
Q 003746 213 VEEAKFIYNKMPERNII-----------------------ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLV-SWSALI 266 (798)
Q Consensus 213 ~~~A~~~~~~m~~~~~~-----------------------~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li 266 (798)
.++|+..|+++...... .+...+..+-....++.|...+.+... .|.. ......
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 99999999998653211 011112222222334555555554322 1211 112345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc-hhH------------H
Q 003746 267 SCYEQNEMYEEALVLFMNMIDHRVMV-DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY-INL------------Q 332 (798)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~------------~ 332 (798)
..+...|++++|+..|++..+. .| +...+..+-.++.+.|+.++|...+..+++...... ... .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 6778899999999999999874 35 456677777888899999999999999987653221 111 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC
Q 003746 333 NALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 333 ~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 406 (798)
..+...+.+.|++++|++.|++. .+.+...+..+...+...|++++|++.|++... .+...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 23355778999999999999873 334566788889999999999999999998863 35667777777775 467
Q ss_pred hHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 407 FSETLSLFMEMQHHGIR--------PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
.++|+.+++.+...... .....+......+...|++++|.+.++.+++... .+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 89999988765432100 0012234455667789999999999999998753 35667788999999999999
Q ss_pred HHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCcHHHH
Q 003746 479 NALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI---------TFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 479 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 546 (798)
+|...|+++.+. +...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999987542 44556666666788999999999998865432222221 233456678899999999
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
..+++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..++..+...|++++|++.++++++.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 998872 2345667788999999999999999999988 4455 5789999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 625 QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|+++..+..++.++...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999987654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.2e-21 Score=226.14 Aligned_cols=563 Identities=12% Similarity=0.046 Sum_probs=314.7
Q ss_pred CCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~ 154 (798)
.|++++|...|+...+ .+...+..+...|.+.|++++|+..+++..+. .|+...|..++... ++...|..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 3555555555554322 23344555555555555555555555555533 23333333322111 4455555555
Q ss_pred HHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHccCCCCC--cchH-HHHHHHHHhCCCHHHHHHHHhhC
Q 003746 155 DHVLKAGFDSDVYVNNTLINM--------YAVCGDLSAARKLFDESPVLD--LVSW-NSILAGYVNADNVEEAKFIYNKM 223 (798)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~d--~~~~-~~li~~~~~~g~~~~A~~~~~~m 223 (798)
+.+++.. +.+..++..+... |.+.++..++++ .+...++ .... -.+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5555544 3334444444443 444444444444 2222222 2222 22245555555555555555555
Q ss_pred CCCC---chHHHHHHHHHhh-cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCchhHH
Q 003746 224 PERN---IIASNSMIVLFGR-KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVM-VDEVVVV 298 (798)
Q Consensus 224 ~~~~---~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~ 298 (798)
.+.+ ......|...|.. .++ ++|..++....+.|...+..++..|.+.|+.++|.++++++...-.. |+..++.
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 4432 2223334444444 244 55555544333334455555555555555555555555554332111 2222222
Q ss_pred HHHHH------------------------------Hhcc-----------------------------CchHHHHHHHHH
Q 003746 299 SVLSA------------------------------CANL-----------------------------TVVKAGTSVHAL 319 (798)
Q Consensus 299 ~ll~a------------------------------~~~~-----------------------------~~~~~a~~i~~~ 319 (798)
-.+.- +.+. +...++.+....
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 22111 1111 222222223333
Q ss_pred HHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHHhcCC---HHHHHHH--------
Q 003746 320 AVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN--L----DLISWNSMISGYLKCGS---VEKARAL-------- 382 (798)
Q Consensus 320 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~-------- 382 (798)
+.+.. +-+....--+.-...+.|+.++|.++|+...+ + +...-+-++..|.+.+. ..++..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 22221 22333333344455567788888888876333 1 22233355666666654 2222222
Q ss_pred -----------------HHhcCC---C--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 003746 383 -----------------FDAMIE---K--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440 (798)
Q Consensus 383 -----------------~~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 440 (798)
+..... . +...|..+..++.. +++++|+..|.+.... .|+......+..++...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 111111 2 45567777777666 7777888877776654 466554444444556778
Q ss_pred chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH---HHHHcCChHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII---GFAMNGLADKSLEMFSE 517 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~ 517 (798)
++++|...++.+... +|+...+..+...+.+.|++++|...|+...+.+...++.... .....|++++|+..|++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888776554 2333344556667778888888888887776554433333322 23344888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 003746 518 MKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-D 594 (798)
Q Consensus 518 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 594 (798)
..+ ..|+...+..+..++.+.|+.++|...+++.++ ..|+ ...++.+...+...|++++|++.+++. ...| +
T Consensus 602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 877 456766777777888888888888888888765 4564 667777778888888888888888776 4445 5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..+..++...|++++|+..+++++++.|++..+....+++.....+++.|.+-++......+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 667888888888888888888888888888888888888888888888888888777776655444
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.1e-19 Score=206.32 Aligned_cols=541 Identities=10% Similarity=0.001 Sum_probs=356.5
Q ss_pred hHHHHHHHHHc--CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003746 98 IFNTMMRAYIQ--RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175 (798)
Q Consensus 98 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (798)
++..+..+... .|++++|+..|++..+.. +-+..++..+.+++...|+.++|+...+..++.. +.|...+..|...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh
Confidence 44444554333 488888888888887664 3335567777788888888888888888888775 3455555554222
Q ss_pred HHhcCChHHHHHHHccCCC--C-CcchHHHHHHH--------HHhCCCHHHHHHHHhhCCCCC--chHHH-HHHHHHhhc
Q 003746 176 YAVCGDLSAARKLFDESPV--L-DLVSWNSILAG--------YVNADNVEEAKFIYNKMPERN--IIASN-SMIVLFGRK 241 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~-~li~~y~~~ 241 (798)
++.++|..+++++.. | +...+..+... |.+.+...++++ .+...++ ..+.. .+...|.+.
T Consensus 122 ----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 778888888887662 2 23333333333 666666666666 3333332 33333 347788888
Q ss_pred CCHHHHHHHHhcCCCC---CcccHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHH
Q 003746 242 GNVAEACRLFKEMPKK---DLVSWSALISCYEQN-EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVH 317 (798)
Q Consensus 242 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 317 (798)
|++++|.+++.++.+. +..-+..|...|.++ ++ +++..+++. .++-|......+...+...|+.+.+..++
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877654 223355566677763 66 666666443 23356666777777788888888888777
Q ss_pred HHHHHhCCc-cchhHHHHH------------------------------HHHHHhCCCHHHHHHHHHhcC----------
Q 003746 318 ALAVKIGIE-CYINLQNAL------------------------------IHMYSSCGEITTAEKLFDAGH---------- 356 (798)
Q Consensus 318 ~~~~~~g~~-~~~~~~~~l------------------------------i~~y~~~g~~~~A~~~~~~~~---------- 356 (798)
..+...-.. |+...+--+ ++.+.+.++++.++++..-.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 775544222 322222111 333444455555554432100
Q ss_pred ----------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----CHHHHHHHHHHHHhCCC--
Q 003746 357 ----------------------NLDLISWNSMISGYLKCGSVEKARALFDAMIE-K-----DVVSWSTMISGYAQHDQ-- 406 (798)
Q Consensus 357 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~-- 406 (798)
+.+....--+---..+.|+.++|.++|+.... + +...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 00111111111123356777777777777644 1 22234466667766655
Q ss_pred -hHHHHHHH------------H----------HHHH-cCCCC---CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC
Q 003746 407 -FSETLSLF------------M----------EMQH-HGIRP---DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI 459 (798)
Q Consensus 407 -~~~A~~l~------------~----------~m~~-~g~~p---d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 459 (798)
..+++.+- . .... .+..| +...+..+..++.. +..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 33443331 1 1111 11222 33444444444444 77778888777776654 4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 536 (798)
+......+...+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|+..|++..+.+ |+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHH
Confidence 444333445555689999999999997664 334567777888999999999999999998853 5543 33344445
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 614 (798)
....|++++|...+++.++ +.|+...|..+..++.+.|+.++|.+.+++. ...| +...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5567999999999999976 5678888999999999999999999999988 5556 577888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..+++++++.|+++.++..++.+|...|++++|+..+++..+..
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.7e-21 Score=194.13 Aligned_cols=384 Identities=13% Similarity=0.161 Sum_probs=293.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchh-HHHHHHH
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYIN-LQNALIH 337 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~ 337 (798)
.+|..+...+-..|++++|+.+|+.|++ .+|+. ..|..+..++...|+.+.|.+.+...++. .|+.. +...+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3555555555555555555555555555 23322 24444445555555555555555555443 23222 2334455
Q ss_pred HHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHH
Q 003746 338 MYSSCGEITTAEKLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~ 411 (798)
.....|++++|...+.+....+ .+.|+.|...+...|++..|..-|++...-| ...|-.|...|-..+.+++|+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 5566778888888777643322 3578888888889999999999998886554 457888888999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC
Q 003746 412 SLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK 490 (798)
Q Consensus 412 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 490 (798)
..|.+... ..|+ .+.+..+...|-..|.++.|+..++..++... .-...|+.|..++-..|++.+|...+.+...-
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99988766 3565 45666666777888999999999999887642 24567889999999999999999999887642
Q ss_pred ---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cch
Q 003746 491 ---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKH 565 (798)
Q Consensus 491 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 565 (798)
-..+.+.|...|...|..++|..+|....+ +.|... .++.|...|-+.|++++|+..+++.++ +.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHH
Confidence 356888999999999999999999999888 677754 788999999999999999999999874 8998 789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
|+.|...|-..|+.++|.+.+.+. .+.|. ....+.|...|...|+..+|+..++.+++++||.+..|-.+...+.-..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 66775 6688999999999999999999999999999999999999988877777
Q ss_pred ChhHHHHHHHHH
Q 003746 644 RWDDVLEVRGMM 655 (798)
Q Consensus 644 ~~~~a~~~~~~m 655 (798)
+|.+-.+-++++
T Consensus 505 dw~D~d~~~~kl 516 (966)
T KOG4626|consen 505 DWTDYDKRMKKL 516 (966)
T ss_pred cccchHHHHHHH
Confidence 887744444433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-19 Score=180.13 Aligned_cols=415 Identities=13% Similarity=0.169 Sum_probs=330.3
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDL---VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 313 (798)
-..+.|++++|++--...-..|. ...-.+-.++.+..+++....--....+. ...-..+|..+...+...|+++.|
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHH
Confidence 33445666666665544433221 22222334555666666544433222221 122345788889999999999999
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh--hhH-HHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003746 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL--ISW-NSMISGYLKCGSVEKARALFDAMIEKD 390 (798)
Q Consensus 314 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (798)
...+..+++.. +..+..|..+..+|...|+.+.|...|....+.|+ ... +-+...+...|++++|...|.+..+.+
T Consensus 136 l~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 136 LALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99999999764 33567788899999999999999999988655444 332 233444556899999999988775443
Q ss_pred ---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 391 ---VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 391 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
.+.|+.|...+-.+|+...|++.|++... +.|+ ...|..+...+...+.++.|...+..+.... +....++..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccc
Confidence 46899999999999999999999999876 4565 3567788888888889999988888777653 234566777
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGL 542 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 542 (798)
|.-.|-..|.+|.|+..+++..+.+ ...|+.|..++...|+..+|.+.|.+... ..|+.. ..+.|...+...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcc
Confidence 8888999999999999999987654 46999999999999999999999999988 567754 78999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
+++|..+|....+ +.|. ....+.|...|-.+|++++|..-+++. .++|+ ...++.+...|...|+.+.|+..+.
T Consensus 370 ~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 9999999999865 6676 778899999999999999999999988 88887 6689999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 620 KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 620 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+++..+|.-...+..|+.+|...|+..+|+.-++...+....
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999988765443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=6.2e-17 Score=184.44 Aligned_cols=418 Identities=12% Similarity=0.022 Sum_probs=298.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhc
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACAN 306 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 306 (798)
.+..+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.+++.++. .|+. ..+...-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 456778889999999999999998653 67788999999999999999999999998874 4544 467777788889
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (798)
.|+++.|..-+..+...+-..+.... .++.-+.+......+...++.. +.+..++..+.. |......+.+..-++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 99999998877666554322222222 2222222211223344444332 222233333322 22222111121112221
Q ss_pred CCCCH---HHHHHHHHH---HHhCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC
Q 003746 387 IEKDV---VSWSTMISG---YAQHDQFSETLSLFMEMQHHG-IRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458 (798)
Q Consensus 387 ~~~~~---~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 458 (798)
.+.+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 123478999999999998765 3443 4456666677788999999999999998864 2
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVL 534 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 534 (798)
.....+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .|+. ..+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 3456778888999999999999999997764 35678999999999999999999999999984 5654 4677778
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV-A-------TWGALLGA 604 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~ 604 (798)
.++.+.|++++|...|++.++. .| +...++.+..+|...|++++|.+.|++. ...|+. . .++..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8899999999999999999763 45 4788999999999999999999999986 333321 1 12222233
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|++++|+..++++++++|++...+..++.+|...|++++|.+.++...+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445699999999999999999999999999999999999999999999988653
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.6e-16 Score=168.01 Aligned_cols=535 Identities=13% Similarity=0.077 Sum_probs=388.2
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHh--ccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHH
Q 003746 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASA--LRLSVFEGKLIHDHVLKAG--FDSDVYVNNTLINMYAVCGDLSAARK 187 (798)
Q Consensus 112 ~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (798)
.+.|...|....+.. ++| ....+.+||. ..+++..|..+|..++... ..+|+.+. +-..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 478888898887653 233 3445566664 5679999999999977654 45666544 3467789999999999
Q ss_pred HHccCCCCCcchHHHHHHHH-Hh-----CCCHHHHHHHHhhCC---CCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCC
Q 003746 188 LFDESPVLDLVSWNSILAGY-VN-----ADNVEEAKFIYNKMP---ERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKD 258 (798)
Q Consensus 188 ~f~~~~~~d~~~~~~li~~~-~~-----~g~~~~A~~~~~~m~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 258 (798)
.|.+..+.|+..-++++.-. .. ...+..++.++...- ..|+++.+.|.+.|.-.|+++.+..+...+...+
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998877775555554321 11 223455666655543 3589999999999999999999999998876532
Q ss_pred ------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchh--HHHHHHHHhccCchHHHHHHHHHHHHhCCccchh
Q 003746 259 ------LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVV--VVSVLSACANLTVVKAGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 259 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 330 (798)
..+|-.+.++|-..|++++|...|.+-.+ ..||.++ +.-+-+.+...|+++.+...|..+.+.. +.+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~e 377 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYE 377 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHH
Confidence 34688899999999999999999977665 4566544 4456677888999999999999998864 45566
Q ss_pred HHHHHHHHHHhCC----CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCHHHHH
Q 003746 331 LQNALIHMYSSCG----EITTAEKLFDAGHNL---DLISWNSMISGYLKCGSVEKARALFDAM--------IEKDVVSWS 395 (798)
Q Consensus 331 ~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~ 395 (798)
+...|...|...+ ..+.|..+..+...+ |...|-.+...+-+..-+ .+..+|... ....+...|
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7777777887665 567788888775443 555677666666554433 224444333 234677889
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc---CCCCCH-----HHHHH-HHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHH---GIRPDE-----ATLVS-VISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
.+...+...|.+++|...|.+.... ...+|. +|... +....-..++.+.|.+.+..+++... .-+..|-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHH
Confidence 9999999999999999999988664 223333 22222 33334566799999999999988642 11222222
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRH--- 539 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~--- 539 (798)
|.-+.-..+...+|...++.... .++..|.-+...|.....+..|.+-|+...+. ...+|..+..+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 22222233567788888887664 46778888888999999999999877776553 234677777777775542
Q ss_pred ---------cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 003746 540 ---------MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMP--MSPDVATWGALLGACKK 607 (798)
Q Consensus 540 ---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 607 (798)
.+..++|+++|.++++ ..| |...-|-+.-.++..|++.+|.++|.+.. ...+..+|-.+..+|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 2457788888888875 345 67888889999999999999999999882 22356789999999999
Q ss_pred cCChhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 608 HGDHEMGERVGRKLVEL--QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|++..|+++|+..++. ..+++.....|+.++.+.|+|.+|.+.........
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999864 34566777889999999999999999887776543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.4e-18 Score=183.37 Aligned_cols=288 Identities=15% Similarity=0.135 Sum_probs=200.7
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccchhHH
Q 003746 372 KCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD---EATLVSVISACTHLVALDQG 445 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a 445 (798)
..|++++|...|.++.+. +..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 455555555555555422 334555666666666666666666666655322111 13344555556666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc--------chHHHHHHHHHHcCChHHHHHHHHH
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV--------SSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
..++..+.+.. +.+..+++.++.+|.+.|++++|.+.++.+.+.+. ..|..+...+.+.|++++|+..|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666665542 23455666677777777777777777776654321 1345667778888999999999998
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 518 MKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 518 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
+.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ ...|
T Consensus 206 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 206 ALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8874 344 346777778888899999999999998753 343 456788889999999999999999887 4567
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhCCCccCCc
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS--KGRWDDVLEVRGMMVRRGVVKIPG 665 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~ 665 (798)
+...+..++..+.+.|++++|...++++++..|++......+...+.. .|+.+++..+++.|.++++++.|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 767778889999999999999999999999999987544444333322 568999999999999988888776
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.7e-15 Score=160.34 Aligned_cols=569 Identities=12% Similarity=0.075 Sum_probs=272.5
Q ss_pred hhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHhccCChHHHHHHHH
Q 003746 81 MSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNN--VGVDNYTYPLLAQASALRLSVFEGKLIHD 155 (798)
Q Consensus 81 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~t~~~ll~a~~~~~~~~~a~~~~~ 155 (798)
+++|.+.|..... +|+-..--=.......|++..|+.+|...+... .+||... .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4666666665533 232222111222334567777777777755332 2334322 11233445566666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCC--
Q 003746 156 HVLKAGFDSDVYVNNTLINMYAVCGD---LSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN-- 227 (798)
Q Consensus 156 ~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 227 (798)
.+.+.. |.++..+-.|.-+-....+ +..+...+...- ..|++..+.|...|.-.|+++.+..+...+....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 665544 1222222222222122222 223333333211 3455555666666666666666666655554322
Q ss_pred ----chHHHHHHHHHhhcCCHHHHHHHHhcCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHH
Q 003746 228 ----IIASNSMIVLFGRKGNVAEACRLFKEMPKK---D-LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVV 298 (798)
Q Consensus 228 ----~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 298 (798)
...|-.+..+|-..|++++|...|.+..+. + +..+--+...|.+.|+++.+...|+..... .||.. |..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHH
Confidence 123445556666666666666666554432 1 223444555566666666666666665542 24333 222
Q ss_pred HHHHHHhccC----chHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH------HHHHHHHHh-cCCCChhhHHHHH
Q 003746 299 SVLSACANLT----VVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI------TTAEKLFDA-GHNLDLISWNSMI 367 (798)
Q Consensus 299 ~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~------~~A~~~~~~-~~~~~~~~~~~li 367 (798)
.+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+ ..|..++.. +..+.+...|.+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 2222233332 2233333333333322 33344444444444332221 222222222 3334455555666
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-------CH-----H-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003746 368 SGYLKCGSVEKARALFDAMIEK-------DV-----V-SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL-VSVI 433 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll 433 (798)
..+...|+++.|...|+..... |. + +--.+...+-..++.+.|.+.|...... .|.-++. .-++
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 5566666666666666554221 11 0 1112333444445666666666665553 3333321 1111
Q ss_pred HHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC-----CCcchHHHHHHHHH-----
Q 003746 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE-----KGVSSWNALIIGFA----- 503 (798)
Q Consensus 434 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~----- 503 (798)
-..-..+...+|...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+.+ .|..+.-+|...|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 11112244555555555554432 23344444455555555555555553333221 13333333333322
Q ss_pred -------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc
Q 003746 504 -------MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576 (798)
Q Consensus 504 -------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 576 (798)
..+..++|+++|.+.+... +-|...-+.+...++..|++.+|..+|.++.+. ..-...+|-.+...|..+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHH
Confidence 1233455666666665531 223334455555556666666666666666543 222344555666666666
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Q 003746 577 GMLKEAEELIESM----PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI-------------- 638 (798)
Q Consensus 577 g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-------------- 638 (798)
|++-.|+++|+.. .-+.+..+...|..++...|.+.+|.+.+..+..+.|.++.....++-+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 6666666666654 1123555666666666666666666666666666666666554444332
Q ss_pred -----HHhcCChhHHHHHHHHHHhCCCc
Q 003746 639 -----HASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 639 -----~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
....+..+.|.++|..|...+-+
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23445678888999988876543
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3.2e-17 Score=177.32 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=214.7
Q ss_pred HHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCh
Q 003746 338 MYSSCGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVEKARALFDAMIEKD-------VVSWSTMISGYAQHDQF 407 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 407 (798)
.+...|++++|...|++.. +.+..++..+...+.+.|++++|..+++.+.... ...|..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455677777777776632 2233456667777777777777777777764321 24567777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCc----HHHHhHHHhhHHhcCCHHHHHHH
Q 003746 408 SETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN----SILGTTLIDMYMKLGCVDNALEV 483 (798)
Q Consensus 408 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 483 (798)
++|+.+|+++.+.. +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877642 34566777777778888888888888887776653332 22455677788899999999999
Q ss_pred HhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 484 FHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 484 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
|+++.+. +...+..+...|.+.|++++|+++|+++.+.+......++..+..++...|++++|...++++.+ ..
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EY 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Confidence 9987643 35578888999999999999999999999753222245678888999999999999999999976 35
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHh
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKK---HGDHEMGERVGRKLVE 623 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 623 (798)
|+...+..++..|.+.|++++|.++++++ ...|+...++.++..+.. +|+.+++...++++++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 77777789999999999999999999876 667999999988887764 5688999999988875
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2e-15 Score=172.17 Aligned_cols=269 Identities=14% Similarity=0.080 Sum_probs=206.1
Q ss_pred cCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHH
Q 003746 373 CGSVEKARALFDAMIEK------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQG 445 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 445 (798)
.+++++|.+.|+..... +...|+.+...+...|++++|+..|++.... .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877532 3456888888888899999999999988764 454 45677777778888999999
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99999888764 345678888999999999999999999987643 4567888889999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-ch-------HHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 523 VTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KH-------YGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 523 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
.|+ ...+..+..++...|++++|.+.|++.++ +.|+. .. ++.....+...|++++|.+++++. ...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 455 45788888899999999999999999875 34431 11 122223344579999999999986 555
Q ss_pred CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|+ ...+..+...+...|++++|++.+++++++.+.....+ ....+.+|.++.....+
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 64 56789999999999999999999999999887644322 22234455555554443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.7e-15 Score=174.04 Aligned_cols=389 Identities=10% Similarity=0.054 Sum_probs=231.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHhc
Q 003746 231 SNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVVSVLSACAN 306 (798)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 306 (798)
..-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+. .|+.. ....+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34445556667777777777776543 23334677777777777777777777776653 23322 23333344445
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (798)
.|+.++|...+..+++.. +.+.. +..+...+. ..|+.++|...++++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~-------------------------------~~g~~~~Al~~l~~a 142 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK-------------------------------RAGRHWDELRAMTQA 142 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH-------------------------------HCCCHHHHHHHHHHH
Confidence 555555555555555441 22223 444444555 455555555555444
Q ss_pred CCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHH-----hcccch---hHHHHHH
Q 003746 387 IEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA------TLVSVISAC-----THLVAL---DQGKWIH 449 (798)
Q Consensus 387 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~-----~~~~~~---~~a~~~~ 449 (798)
... +...+..+...+...|..++|++.+++... .|+.. .....+... ...+.+ +.|...+
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 221 333344444444445555555554443321 11110 000111111 111122 4555555
Q ss_pred HHHHHc-CCCCcH--HHHhHH---HhhHHhcCCHHHHHHHHhhcCCCC--cc--hHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 450 AYIRKN-GLKINS--ILGTTL---IDMYMKLGCVDNALEVFHGTEEKG--VS--SWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 450 ~~~~~~-~~~~~~--~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
+.+.+. ...|+. ...... +..+...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555543 112211 111111 223345678888888888877543 11 11224667888888888888888877
Q ss_pred HCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------CcCC---cchHHHHHHHHHhcCCHHH
Q 003746 520 KSGVTPN-----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----------LEPN---SKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 520 ~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 581 (798)
... |. ......+..++...|++++|.++++.+.+... -.|+ ...+..+..++...|++++
T Consensus 300 ~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 642 22 23455566677888888888888888865311 0122 1234567788889999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 582 AEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 582 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++.++++ ...| +...+..+...+...|++++|++.++++++++|++...++.++..+...|+|++|.++++.+.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999887 3334 577888899999999999999999999999999999999999989999999999999998887644
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.5e-15 Score=172.38 Aligned_cols=350 Identities=10% Similarity=0.056 Sum_probs=204.2
Q ss_pred hcCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHH
Q 003746 240 RKGNVAEACRLFKEMPKK------DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAG 313 (798)
Q Consensus 240 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 313 (798)
|..+++.-.-.|...++. +....-.++..+.+.|++++|+.+++........+... +..+..+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHH
Confidence 344555555555544431 23334455666777777777777777776643222222 22222333345555555
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 003746 314 TSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KD 390 (798)
Q Consensus 314 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~ 390 (798)
...+..+++.. +.+...+..+...|. +.|+.++|...|++... .+
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~-------------------------------~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLL-------------------------------KSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHHHhCCCc
Confidence 55555554432 222334444444555 55555555555555432 23
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...|..+...+.+.|++++|...++++.... |+.......+..+...|++++|...+..+++....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 4455555566666666666666665554432 22111111122345556666666666655554322333333444556
Q ss_pred HHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCc
Q 003746 471 YMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADK----SLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGL 542 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 542 (798)
+.+.|++++|...|+..... +...+..+...|...|++++ |+..|++..+ ..|+. ..+..+...+...|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCC
Confidence 66677777777777665532 34566667777777777764 7788888777 34554 367777778888888
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChhHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVAT-WGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
+++|...++++++ ..|+ ...+..+...|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|+..++
T Consensus 300 ~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 300 NEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888765 3454 556667778888888888888888776 34555433 3345667778888888888888
Q ss_pred HHHhcCCCCc
Q 003746 620 KLVELQPDHD 629 (798)
Q Consensus 620 ~~~~~~p~~~ 629 (798)
++++..|++.
T Consensus 377 ~al~~~P~~~ 386 (656)
T PRK15174 377 HYIQARASHL 386 (656)
T ss_pred HHHHhChhhc
Confidence 8888888764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=5.1e-15 Score=171.79 Aligned_cols=408 Identities=11% Similarity=0.055 Sum_probs=283.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC-C--CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 003746 199 SWNSILAGYVNADNVEEAKFIYNKMPE-R--NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQN 272 (798)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 272 (798)
...-.+......|+.++|++++.+... . +...+..+...+.+.|++++|.++|++... .+...+..++..+...
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 344455667789999999999999875 2 344588999999999999999999999543 3566788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHH
Q 003746 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF 352 (798)
Q Consensus 273 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 352 (798)
|++++|+..+++..+. .|+...+..+..++...|+.+.|...+..+++.. +.+..++..+...+.+.|..++|.+.+
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999999875 4544446677777889999999999999999875 335556666788888777777777777
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHc-CCCCCHH-
Q 003746 353 DAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQF---SETLSLFMEMQHH-GIRPDEA- 427 (798)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~pd~~- 427 (798)
++... ++.....+ ....+..... ..+.......+++ ++|++.++.+... ...|+..
T Consensus 174 ~~~~~-~p~~~~~l--------~~~~~~~~~r----------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 174 DDANL-TPAEKRDL--------EADAAAELVR----------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HhCCC-CHHHHHHH--------HHHHHHHHHH----------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 65443 22100000 0000000000 0000111112223 5667777776643 1223221
Q ss_pred HHH----HHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-------cchH
Q 003746 428 TLV----SVISACTHLVALDQGKWIHAYIRKNGLK-INSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-------VSSW 495 (798)
Q Consensus 428 t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~ 495 (798)
.+. ..+.++...++.++|+..++.+.+.+.+ |+. ....+...|...|++++|...|+++...+ ...+
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1123344557777777777777766532 221 12224667888888888888888765432 1235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSG-----------VTPNE---ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP 561 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 561 (798)
..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|.+.++++... .|
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P 390 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---AP 390 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence 556667788888888888888887642 12342 23455667888999999999999999763 45
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 562 -NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 562 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
+...+..+..++...|++++|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5788899999999999999999999988 55665 66777888888999999999999999999999997544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.4e-14 Score=164.60 Aligned_cols=427 Identities=10% Similarity=0.055 Sum_probs=221.6
Q ss_pred HHhCCCHHHHHHHHhhCCCCCchH---HHHHHHHHhhcCCHHHHHHHHhcCCCCCcccH-HHH--HHHHHhcCChhHHHH
Q 003746 207 YVNADNVEEAKFIYNKMPERNIIA---SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSW-SAL--ISCYEQNEMYEEALV 280 (798)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 280 (798)
..+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445666666666666665533321 22666666677777777777777766543333 333 346667788888888
Q ss_pred HHHHHHHCCCCCCc-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc---C
Q 003746 281 LFMNMIDHRVMVDE-VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG---H 356 (798)
Q Consensus 281 l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~ 356 (798)
+|+++.+.. |+. ..+..+...+...+..+.|...+..+.+. .|+...+..++..+...++..+|++.+++. .
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888887632 332 22223333334444444444444444332 222222333333333333333344444442 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003746 357 NLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISA 435 (798)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 435 (798)
+.+...+..+...+.+.|-...|.++..+-+.- +...+.-+- .+.|.+.. +.+..|+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~~v----r~a~~~~~--------- 258 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAEQV----RMAVLPTR--------- 258 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHHHH----hhcccccc---------
Confidence 122333344444444444444444444433211 111110000 00000000 00000000
Q ss_pred Hhccc---chhHHHHHHHHHHHc-CCCCc-HHH-HhHH---HhhHHhcCCHHHHHHHHhhcCCCC--c--chHHHHHHHH
Q 003746 436 CTHLV---ALDQGKWIHAYIRKN-GLKIN-SIL-GTTL---IDMYMKLGCVDNALEVFHGTEEKG--V--SSWNALIIGF 502 (798)
Q Consensus 436 ~~~~~---~~~~a~~~~~~~~~~-~~~~~-~~~-~~~l---i~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~ 502 (798)
.... -.+.|..-++.+... +-.|. ... ..+. +-++.+.|+..++++.|+.+.... + .+-.++.++|
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0001 122233333333331 11121 111 1222 234456677777777777776433 2 2445566777
Q ss_pred HHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------CcCC---cc
Q 003746 503 AMNGLADKSLEMFSEMKKSGV-----TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----------LEPN---SK 564 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~ 564 (798)
...+++++|+.+|+++..... .++......|..++...+++++|..+++++.+... -.|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 777777777777777655321 11222345667777777777777777777754211 0122 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.+..++..+...|++.+|++.++++ ..-| |...+..+...+...|++..|++.++.+..++|++......++.++...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 3445566677777788887777777 2223 6777777777777778888888777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHhCC
Q 003746 643 GRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~ 659 (798)
|+|.+|.++.+.+.+..
T Consensus 498 ~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 498 QEWHQMELLTDDVISRS 514 (822)
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 88887777777666543
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=2.1e-15 Score=171.24 Aligned_cols=316 Identities=9% Similarity=-0.025 Sum_probs=251.8
Q ss_pred HHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHH
Q 003746 336 IHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSE 409 (798)
Q Consensus 336 i~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 409 (798)
+....+.|+.++|..+++.. .+.+...+..++.+....|+.++|...|+++.. .+...|..+...+.+.|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 34445566666666666542 333344455555666689999999999998853 356788999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC
Q 003746 410 TLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488 (798)
Q Consensus 410 A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 488 (798)
|+..|+++... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+ ..+.+.|++++|...++.+.
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 454 566777888899999999999999988776544333 33333 34788999999999999876
Q ss_pred CCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHH----HHHHHHHHHHhCCC
Q 003746 489 EKG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDE----GHRHFNSMIQEHRL 559 (798)
Q Consensus 489 ~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~ 559 (798)
+.+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|+++++ +
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l 279 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---F 279 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---h
Confidence 542 234455667889999999999999999985 455 4467778889999999986 8999999976 4
Q ss_pred cCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 560 EPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 560 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
.|+ ...+..+...|.+.|++++|...+++. ...| +..++..+..++...|++++|+..++++++..|+++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 564 778899999999999999999999988 4455 4667888999999999999999999999999999887777788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 003746 637 NIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.++...|++++|.+.++...+...
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999877544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.5e-13 Score=156.28 Aligned_cols=433 Identities=10% Similarity=0.076 Sum_probs=257.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHH---HHHHHhCCCHHHHHH
Q 003746 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSI---LAGYVNADNVEEAKF 218 (798)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~ 218 (798)
.+.|++..|...+.++.+......+.++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666666665421112333 677777777777788777777665544433332 335666677777777
Q ss_pred HHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCC
Q 003746 219 IYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQ--NEMYEEALVLFMNMIDHRVMVD 293 (798)
Q Consensus 219 ~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 293 (798)
+|+++.+. ++.++..++..|.+.++.++|++.++++...+......+..+|.. .++..+|++.++++.+.. |+
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~ 201 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PT 201 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CC
Confidence 77777653 345566667777777888888888877765443322223334443 455555888888877742 43
Q ss_pred chhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh
Q 003746 294 EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHN-LDLISWNSMISGYLK 372 (798)
Q Consensus 294 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 372 (798)
. ...+..++....+.|-...|.++.++.+. -+...+.-|
T Consensus 202 n----------------------------------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l------ 241 (822)
T PRK14574 202 S----------------------------------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL------ 241 (822)
T ss_pred C----------------------------------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH------
Confidence 2 33333444444555555555555443221 000000000
Q ss_pred cCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHhcccchh
Q 003746 373 CGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ---FSETLSLFMEMQHH-GIRPDE-ATL----VSVISACTHLVALD 443 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~t~----~~ll~a~~~~~~~~ 443 (798)
+.+.|.+..+....++. ...++ .+.|+.-++.+... +-.|.. .-+ .--+-++...++..
T Consensus 242 --~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 242 --ERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred --HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 01111111111100000 00111 23333334443321 111211 111 11233455566666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCChHHHHHH
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---------GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
++++.++.+...+.+....+-.++.++|...+++++|..+++.+... +......|.-+|...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 66666666666665544556666677777777777777777665321 122245667777777777777777
Q ss_pred HHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH
Q 003746 515 FSEMKKSG-------------VTPNEIT-FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 515 ~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 579 (798)
++++.+.. ..||-.. +..++..+...|++.+|.+.++++.. ..| |......+.+++...|.+
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCH
Confidence 77777621 2233333 34455778889999999999999976 345 788999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.+|++.++.. ...| +..+....+.++...+++++|..+.+++++..|+++.+-
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999877 4456 466777888888899999999999999999999997543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=5.2e-11 Score=123.63 Aligned_cols=600 Identities=14% Similarity=0.100 Sum_probs=417.5
Q ss_pred hHHHHHHHHHHHHhCC-CCchhhhhhccccccCccCCCChhHHHHhhhcC---CCCCcchHHHHHHHHHcCCCchHHHHH
Q 003746 43 FKQFTQILSQMILTGL-IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFL---ESPNGFIFNTMMRAYIQRNVPQQAICL 118 (798)
Q Consensus 43 ~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 118 (798)
+..++.+...+.++.+ .|.-.+.++-+. - ..|.+..|+.+...- -+++...|---| +-..++.|..+
T Consensus 267 ikKaR~llKSvretnP~hp~gWIAsArLE----E-vagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 267 IKKARLLLKSVRETNPKHPPGWIASARLE----E-VAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHH----H-HhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHH
Confidence 4556666666666543 233344443333 1 456666666665532 224444443222 22334444444
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CC
Q 003746 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VL 195 (798)
Q Consensus 119 ~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~ 195 (798)
.....+. -|+... .-++|---..+...-..++..+++. ++.++..|-..+. ....++|+.++.+.. ..
T Consensus 338 vA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 338 VANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc
Confidence 4444322 122221 1222222222333344555555554 2555556655443 344555666665543 12
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--------CCcccHHH
Q 003746 196 DLVSWNSILAGYVNADNVEEAKFIYNKMPE---RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--------KDLVSWSA 264 (798)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~ 264 (798)
....| -+|++..-++.|..+++..++ .+..+|.+-...=-..|.++...++.++-.. -|...|-.
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 22233 345555566666666665544 4666776666666677777777777665321 14445666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCc--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhC
Q 003746 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDE--VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC 342 (798)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 342 (798)
=...+-..|..--+..+....+.-|+.-.. .|+...-..|.+.+.++-++.++..+++. ++.+..+|...+..--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 666666667777777777777766655432 47777788888888888888888888765 466677788877777788
Q ss_pred CCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 003746 343 GEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFME 416 (798)
Q Consensus 343 g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 416 (798)
|..+.-..+|++ ..+.....|-.....+-..|++..|+.++.+..+. +...|-+-+..-..+.+++.|..+|.+
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 888888888887 45566677888888888899999999998887533 566788888888999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--C-Ccc
Q 003746 417 MQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--K-GVS 493 (798)
Q Consensus 417 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 493 (798)
.... .|+...|.--++.---.+..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+ | .+.
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 8764 566666665555555678899999999988886 444566788888889999999999998876554 2 356
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|-.+...--+.|..-+|..++++....+ +-|...|...+..-.+.|+.++|..+..+++++ .+.+...|..-|.+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhc
Confidence 78888888888999999999999988764 335568899999999999999999999999875 455678888889999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 574 GRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
.+.++-..+.+.+++. +.|+.+.-++...+....+++.|.+.|+++++.+|++..++..+-..+...|.-++-.++++
T Consensus 798 ~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888877777777776 45677777888888888999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCccceEEECCEE
Q 003746 654 MMVRRGVVKIPGCSMIEANGII 675 (798)
Q Consensus 654 ~m~~~~~~~~~~~s~i~~~~~~ 675 (798)
+..... +..|..|+.+...+
T Consensus 876 ~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 876 KCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHhccC--CCCCcHHHHHhhhH
Confidence 887644 34566777554433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=4e-14 Score=139.89 Aligned_cols=451 Identities=15% Similarity=0.127 Sum_probs=299.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCCC----Ccc-hHHHHHHHHHhCCCHHHHHHHHhhCCCC--------CchHHH
Q 003746 166 VYVNNTLINMYAVCGDLSAARKLFDESPVL----DLV-SWNSILAGYVNADNVEEAKFIYNKMPER--------NIIASN 232 (798)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~ 232 (798)
-.+...|..-|.......+|+..++-+... +.- .--.+...+.+...+.+|++.|+..... .+...+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 344555666777777788888877765522 211 1112344567778888888888765542 233455
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
.+.-.+.+.|++++|..-|+...+ ||..+--.|+-++..-|+-++..+.|++|+.-...||..-|.. ...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~d-- 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKD-- 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcC--
Confidence 566667888999999999987653 6777666666677778888999999999987655555543310 000
Q ss_pred HHHHHHHHHHHHhCCccchhHHHH-----HHHHHHhCCCH--HHH----HHHHHhcCCCChhh---H----------H--
Q 003746 311 KAGTSVHALAVKIGIECYINLQNA-----LIHMYSSCGEI--TTA----EKLFDAGHNLDLIS---W----------N-- 364 (798)
Q Consensus 311 ~~a~~i~~~~~~~g~~~~~~~~~~-----li~~y~~~g~~--~~A----~~~~~~~~~~~~~~---~----------~-- 364 (798)
.|+....|. .+.-.-+..+- +++ .++..-.+.||... | .
T Consensus 353 ---------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 353 ---------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred ---------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 111111111 11111111110 111 11111111222100 1 0
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHhcCCCCHHHH----HHHH-HHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003746 365 ------SMISGYLKCGSVEKARALFDAMIEKDVVSW----STMI-SGYAQHD-QFSETLSLFMEMQHHGIRPDEATLVSV 432 (798)
Q Consensus 365 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~li-~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~l 432 (798)
.-...|.++|+++.|.++++-...+|..+- |.|- --|.+.| ++..|.+.-+...... +-+......-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 011246799999999999888876654432 2222 2334433 4667766666554332 2333333333
Q ss_pred HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChH
Q 003746 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE---EKGVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 433 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 509 (798)
-+.....|+++.|...+.+.+...-.-....|| +.-.+.+.|++++|++.|-++. ..++...-.+.+.|-...+..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 344456789999999999998765433344444 3335778999999999997765 346667777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
+|++++.+.... ++.|...+..|...|-+.|+-.+|.+++-.- +..-| +.++...|..-|....-+++|..+|++
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999877663 3444557788889999999999999887654 44555 799999999999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 589 M-PMSPDVATWGALLGAC-KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 589 ~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
. -++|+..-|..++..| ++.|++..|..+++......|.+..+.-.|..++...|..
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 8 5689999999998887 6789999999999999999999999998888888877753
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.3e-11 Score=133.36 Aligned_cols=531 Identities=13% Similarity=0.103 Sum_probs=322.1
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 003746 109 RNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKL 188 (798)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (798)
.|+.++|.+++.+.++.. +.+...|.+|...+-..|+.+.+...+-.+.-.. +.|...|..+.....+.|.++.|+-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 366666666666666543 4445556666666666666665555444333333 44556666666666666666666666
Q ss_pred HccCCCCCcchHHHH---HHHHHhCCCHHHHHHHHhhCCCCCc----h----HHHHHHHHHhhcCCHHHHHHHHhcCCC-
Q 003746 189 FDESPVLDLVSWNSI---LAGYVNADNVEEAKFIYNKMPERNI----I----ASNSMIVLFGRKGNVAEACRLFKEMPK- 256 (798)
Q Consensus 189 f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~y~~~g~~~~A~~~f~~~~~- 256 (798)
|.+....++.-|-.+ ...|-+.|+...|++.|.++.+.++ . .--..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 665553333333332 3445566666666666666654332 1 111234445556666777777766554
Q ss_pred -C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------------chhH----HHHHHHHhc
Q 003746 257 -K---DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD----------------------EVVV----VSVLSACAN 306 (798)
Q Consensus 257 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~----~~ll~a~~~ 306 (798)
. +...+|.++..|.+...++.|......+.....++| ...| .-+.-+..+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 344678888888888888888888877766222221 1111 122333445
Q ss_pred cCchHHHHHHHHHHHHhC--CccchhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHH
Q 003746 307 LTVVKAGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGH----NLDLISWNSMISGYLKCGSVEKAR 380 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 380 (798)
....+....+.....+.. ...++..+..+.++|...|++.+|.++|.... -.+...|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 666666677777777776 44567788899999999999999999997632 234568999999999999999999
Q ss_pred HHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 381 ALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQ--------HHGIRPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 381 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
..|+..... +...--+|...+.+.|++++|++.+..+. ..+..|+..........+.+.|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999988543 33444556677889999999999998864 2234455555555555666777776644443
Q ss_pred HHHHHcC----------------------CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhc------CCCC--cc----hH
Q 003746 450 AYIRKNG----------------------LKINSILGTTLIDMYMKLGCVDNALEVFHGT------EEKG--VS----SW 495 (798)
Q Consensus 450 ~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~--~~----~~ 495 (798)
..++... ..........++.+-.+.++......-...- ...+ +. .+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 3333211 1111122222333333333322111111100 0111 11 23
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC---cchHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGV--TPNEI--TF-VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN---SKHYG 567 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~ 567 (798)
.-++..+++.++.++|+.+...+..... .++.. .+ ...+.++...+++..|..+++.|+..++...+ ...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4567788999999999999988876432 22221 22 33456677889999999999999876554433 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH--HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPDVATWGAL--LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
+..+.+.+.|+-.--.+++... ..+|+......+ ..-....+.+.-|+..+-++....|++|.+-..|+-++.+
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6667777777655555555554 223332111112 2223456788899999999999999999888888766644
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.7e-12 Score=123.42 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=159.7
Q ss_pred HHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 219 ~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
++-+.......++..||.+.+|--..+.|.+++.+.... +..++|.+|.+-.- ....+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 333333444455666666666666666677776665432 55677777765432 2236788888888888888
Q ss_pred hhHHHHHHHHhccCchHH----HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHH-HHHHH----h--------cCC
Q 003746 295 VVVVSVLSACANLTVVKA----GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA-EKLFD----A--------GHN 357 (798)
Q Consensus 295 ~t~~~ll~a~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~----~--------~~~ 357 (798)
.||+++|++.++.|+++. +.+++.+|.+.|++|...+|.-+|..+.+.++..+. ..++. + ..+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 899988888888887665 446778888888888888888888888888776543 22221 1 122
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 003746 358 LDLISWNSMISGYLKCGSVEKARALFDAMIEK--------D---VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE 426 (798)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 426 (798)
.|..-+.+-+..|....+.+.|.++-.-.... + ..-|..+....++....+.-...|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34445666666676777777777776554322 1 123555666777777788888888888777777888
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHcCC
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGL 457 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 457 (798)
.+...++++....+.++-..+++..++..|.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 8888888887777777777777777766653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=5e-11 Score=128.87 Aligned_cols=441 Identities=17% Similarity=0.106 Sum_probs=286.9
Q ss_pred CCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIH 154 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~ 154 (798)
.|++++|.+++.++-. ++...|..|...|-+.|+.+.+...+-..... .+.|..-|..+..-..+.|++..|+-++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999998744 57789999999999999999998876554433 3556677888888889999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc-chH-------HHHHHHHHhCCCHHHHHHHHhhCCC-
Q 003746 155 DHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL-VSW-------NSILAGYVNADNVEEAKFIYNKMPE- 225 (798)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~~- 225 (798)
..+++.. +++....-.-..+|-+.|+...|..-|.++...++ +.| -.++..+...++.+.|++.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999988 56666666667899999999999988887664332 212 2335566677777889988887765
Q ss_pred ----CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--------------------------CCcccHH----HHHHHHHh
Q 003746 226 ----RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--------------------------KDLVSWS----ALISCYEQ 271 (798)
Q Consensus 226 ----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------------------~~~~~~~----~li~~~~~ 271 (798)
.+...++.++.+|.+...++.|......+.. ++..+|+ -+.-++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2445678888888888888888777655432 1112222 12233444
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHH
Q 003746 272 NEMYEEALVLFMNMIDHRVMV--DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAE 349 (798)
Q Consensus 272 ~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 349 (798)
....+....+........+.| +...|.-+..++...|.+..|..++..+......-+..+|--+..+|-..|.++.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444444444444455555333 445677788889999999999999999988766667888999999999999999999
Q ss_pred HHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH-----HH-------HHHHHHHHhCCChHHHHHHH
Q 003746 350 KLFDAGHNLD---LISWNSMISGYLKCGSVEKARALFDAMIEKDVV-----SW-------STMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 350 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~l~ 414 (798)
+.|++....+ ...-.+|-..+.+.|+.|+|.+++..+..+|.. .| -.....+.+.|+.++=+..-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9998844333 334455666788899999999999988665521 11 22344566677776655544
Q ss_pred HHHHHcC----------------------CCCCHHHHHHHHHHHhcccchhHHHH------HHHHHHHcCCCCcH--HHH
Q 003746 415 MEMQHHG----------------------IRPDEATLVSVISACTHLVALDQGKW------IHAYIRKNGLKINS--ILG 464 (798)
Q Consensus 415 ~~m~~~g----------------------~~pd~~t~~~ll~a~~~~~~~~~a~~------~~~~~~~~~~~~~~--~~~ 464 (798)
..|...+ .+-...+.-.+..+-.+.++...... ........|+..+. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 4443211 01111122222222222222111111 11111122333222 244
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCCCc---------chHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEKGV---------SSWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
.-++..+++.|+.++|..+...+..-++ ..-..++.+....+++..|...++.|..
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566677777777777777665554221 1234455566667777777777777665
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.9e-12 Score=123.73 Aligned_cols=361 Identities=11% Similarity=0.071 Sum_probs=243.7
Q ss_pred CCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 003746 78 FIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHV 157 (798)
Q Consensus 78 ~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 157 (798)
.|.+.+ ++-+..++...+|..||.++++-...+.|.++|++......+.+..+|+.+|.+-+ +..++++..+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHH
Confidence 344444 44445556777999999999999999999999999999888999999999998864 44458999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHc----cCC----CCCcchHHHHHHHHHhCCCHHH-HHHHHhhCCC---
Q 003746 158 LKAGFDSDVYVNNTLINMYAVCGDLSAARKLFD----ESP----VLDLVSWNSILAGYVNADNVEE-AKFIYNKMPE--- 225 (798)
Q Consensus 158 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~--- 225 (798)
+...+.||.+++|+++...++.|+++.|++.+- +|+ +|...+|..+|..+++.++..+ |..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999999988876653 444 7888999999999999988755 4444444432
Q ss_pred ---------CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC-----------CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 226 ---------RNIIASNSMIVLFGRKGNVAEACRLFKEMPKK-----------DLVSWSALISCYEQNEMYEEALVLFMNM 285 (798)
Q Consensus 226 ---------~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m 285 (798)
.|...+..-++.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+..|..|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14445566667777888888888886554321 2235667788889999999999999999
Q ss_pred HHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 003746 286 IDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365 (798)
Q Consensus 286 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 365 (798)
.-.-.-|+..+...++++....+.++...+++..++..|......+.--++..+++. ...|+...-.-
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~------------k~hp~tp~r~Q 492 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD------------KLHPLTPEREQ 492 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC------------CCCCCChHHHH
Confidence 988888999999999999999999999999999999888655444444443333311 11222111111
Q ss_pred HHHHHHhcC-CH-HHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHh
Q 003746 366 MISGYLKCG-SV-EKARALFDAMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI----RPDEATLVSVISACT 437 (798)
Q Consensus 366 li~~~~~~g-~~-~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~ 437 (798)
+-....++- ++ +..+..-.+|... .....+.....+.+.|+.++|.++|....+.+- .|......-++.+..
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 111111110 01 1111111122211 334455566666677777777777766654432 222233334444444
Q ss_pred cccchhHHHHHHHHHHHcCC
Q 003746 438 HLVALDQGKWIHAYIRKNGL 457 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~ 457 (798)
..++..+|...++.+...+.
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCc
Confidence 55555555555555544443
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=1.8e-11 Score=131.28 Aligned_cols=543 Identities=11% Similarity=0.040 Sum_probs=313.5
Q ss_pred HHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 003746 48 QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESP----NGFIFNTMMRAYIQRNVPQQAICLYKLML 123 (798)
Q Consensus 48 ~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (798)
.++..+...|+.|+..+|.+|+. .|+ ..|+++.|- +|..|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLia--rYc-~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIA--RYC-TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHH--HHc-ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 35666778899999999999999 999 999999998 88888653 5567899999988888887765
Q ss_pred hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC-CC-CcchHH
Q 003746 124 NNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-VL-DLVSWN 201 (798)
Q Consensus 124 ~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~-d~~~~~ 201 (798)
.|-+.||..|+.+|+..||+.. ++...+ -.-.++..+...|--..-..++-.+. .| -...-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~ 143 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE 143 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH
Confidence 6888899999999999998766 222222 12233344445554444444444322 11 111122
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhh-cCCHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCChh
Q 003746 202 SILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGR-KGNVAEACRLFKEMP-KKDLVSWSALISCYEQNEMYE 276 (798)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~-~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~ 276 (798)
..+.-.+-.|.++.+++++..++.. +++.. .+.-... ...+++-...-.... .++..++.+++.+-..+|+.+
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3344455567777777777766542 11111 1111111 112222222222222 479999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 003746 277 EALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH 356 (798)
Q Consensus 277 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 356 (798)
.|..++.+|++.|++.+...|..+|-+ .++......+..-|...|+.|+..++...+-...+.|....+....+...
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999999998876 78888899999999999999999999988888877666433333222222
Q ss_pred CCChhhHHHHHHHHHhcCCHHH--HHHHHHhcCC-------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC
Q 003746 357 NLDLISWNSMISGYLKCGSVEK--ARALFDAMIE-------KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD 425 (798)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd 425 (798)
-.....+..+.++.....+++. +.-+....+. .....|...+ -...+|+-++..++-..|..-- ..++
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcc
Confidence 2222233333333111111111 1111111111 1223333222 2223566666666655553211 1111
Q ss_pred -HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHh--HHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHH
Q 003746 426 -EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGT--TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGF 502 (798)
Q Consensus 426 -~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 502 (798)
...|.. ...++|.++.+... ...++ ..+.............+..... .+|
T Consensus 378 ~V~a~~~------------~lrqyFrr~e~~~~---~~i~~~~qgls~~l~se~tp~vsell~~l-rkn----------- 430 (1088)
T KOG4318|consen 378 NVDAFGA------------LLRQYFRRIERHIC---SRIYYAGQGLSLNLNSEDTPRVSELLENL-RKN----------- 430 (1088)
T ss_pred hHHHHHH------------HHHHHHHHHHhhHH---HHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccc-----------
Confidence 111111 22333433333211 11111 1111111111222222222222 111
Q ss_pred HHcCChHHHHHHHHH-----HHHCCCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 503 AMNGLADKSLEMFSE-----MKKSGVTP-------NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~-----m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
-+++-+.. ..+. ..| -...-+.++..|...-+..++...-+.. +.+-+ ...|..||
T Consensus 431 -------s~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li 498 (1088)
T KOG4318|consen 431 -------SFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLI 498 (1088)
T ss_pred -------hHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHh
Confidence 11111100 1100 111 1112344555555555555555443333 21112 26788999
Q ss_pred HHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh---cCCCCcchHHHHHHHHHhc
Q 003746 571 DLLGRAGMLKEAEELIESMP-----MSPDVATWGALLGACKKHGDHEMGERVGRKLVE---LQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~ 642 (798)
+.+.....+++|..+.++.. ..-|..-+..+.+...+++....+..+++++.+ ..|........+.+--+..
T Consensus 499 ~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~a 578 (1088)
T KOG4318|consen 499 KLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPA 578 (1088)
T ss_pred hhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhc
Confidence 99999999999999988873 223445677788888888888888888877765 3444445555666777888
Q ss_pred CChhHHHHHHHHHHhCCCcc
Q 003746 643 GRWDDVLEVRGMMVRRGVVK 662 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~~~~ 662 (798)
|+.+...+..+-+...|+.-
T Consensus 579 gqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 579 GQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred cCHHHHHHHHHHHHHhhhhh
Confidence 99999999999888887753
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=2.9e-09 Score=110.99 Aligned_cols=568 Identities=12% Similarity=0.055 Sum_probs=322.5
Q ss_pred hhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 003746 66 SRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA 142 (798)
Q Consensus 66 ~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~ 142 (798)
++++. .+....+++..|+.++....+ .+...|-+-.+.--..|.+..|..+..+=.+. .+-+...| |.++
T Consensus 254 ~sm~p--~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai- 326 (913)
T KOG0495|consen 254 NSMIP--TSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI- 326 (913)
T ss_pred HhcCC--CccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-
Confidence 44555 444256777888888887654 45667877666666778887777665432221 22333334 3332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHH
Q 003746 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFI 219 (798)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~ 219 (798)
+....+.|+.+...+++.- +.++..|---++.-. +...=.+++.... ..++..|-. .+.....+.|.-+
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~daril 398 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARIL 398 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHH
Confidence 4556777888888888764 455555543333221 2222234443322 234445544 3445566667777
Q ss_pred HhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCC
Q 003746 220 YNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMN----MIDHRVMV 292 (798)
Q Consensus 220 ~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p 292 (798)
+.+..+--+. ..-|.-+|++..-++.|..+++...+ .+...|-+-...--.+|+.+...++..+ +...|+..
T Consensus 399 L~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i 477 (913)
T KOG0495|consen 399 LERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI 477 (913)
T ss_pred HHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee
Confidence 7776552211 12244456677788899999887654 4788898888888889999988888765 45678888
Q ss_pred CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc--hhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHH
Q 003746 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY--INLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMI 367 (798)
Q Consensus 293 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li 367 (798)
+...|..=..+|-..|..-....|...++..|++.. -.+++.-.+.+.+.+.++-|+.+|.. ..+.+...|....
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 888888888888888888888888888777776432 34666666667766666666666643 2333444555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 368 SGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
..=-..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+.... +...+...+..-.....++.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHH
Confidence 555555555555555555532 23445555555555556666666665555543211 33444444444555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--C-cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--G-VSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|+.++...... .++..+|.--+...--.+..++|.+++++..+. + ...|-.+...+-+.++.+.|.+.|..-.+
T Consensus 637 aR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k- 713 (913)
T KOG0495|consen 637 ARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK- 713 (913)
T ss_pred HHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-
Confidence 55555555442 234444443344344445555555555544432 1 12444444555555555555555444333
Q ss_pred CCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHH
Q 003746 522 GVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATW 598 (798)
Q Consensus 522 g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 598 (798)
.-|+.+ -|..+...=.+.|.+-.|..++++..-+ -+-+...|-..|.+=.|.|..+.|..+..++ ..+.+...|
T Consensus 714 -~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 714 -KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred -cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 234433 3333333344455555555555554322 1123455555555555555555555554444 222334445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..-|....+.++-.....++++ -..|+-....++.++....+++.|++.|.+....+.
T Consensus 791 aEaI~le~~~~rkTks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHhccCcccchHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4444444444443333333222 224556677788889999999999999998877553
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.6e-14 Score=147.71 Aligned_cols=256 Identities=17% Similarity=0.213 Sum_probs=114.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcC
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG 475 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 475 (798)
+...+.+.|++++|++++++.......|+...|-.+ ...+-..++.+.|.+.++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566777777777777554433223444444333 33444567777777777777766433 45556667766 6888
Q ss_pred CHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 476 CVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 476 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
++++|.+++...-+ ++...|..++..+...|+++++.++++++.... ..++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988876643 356678888899999999999999999987643 244556777888889999999999999999
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+++ ..|+ ....+.++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 987 4674 778889999999999999988888776 1234667889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.....+++++...|+.++|.++++...+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.5e-11 Score=121.01 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=173.3
Q ss_pred ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 003746 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMF 515 (798)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 515 (798)
.|+.-.+.+-++.+++....++ ..|--+..+|....+.++-...|+.... .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888754433 2366677789999999999999987664 35678888888888889999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 516 SEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 516 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
++.++ +.|+.+ .|..+.-+..+.+.++++...|++.+++ ++.-+++|+.....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 566654 6777777778899999999999999885 4445899999999999999999999999987 4444
Q ss_pred C---------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 594 D---------VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+ +.+-.+++.. .-.+++..|+.+++++++++|.....|..|+.+-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2333333333 3449999999999999999999999999999999999999999999987653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-10 Score=114.93 Aligned_cols=354 Identities=15% Similarity=0.091 Sum_probs=257.5
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHH-HHHHHHHH
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSW-STMISGYA 402 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~li~~~~ 402 (798)
+...|....-...-.+.+.|....|+..|.+....-+..|.+-+....-..+.+.+..+....+..+...- --+..+|.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 44555555555556677788888888888775554455555555444445556666555555544322211 12344666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCC--CCcHHHHhHHHhhHHhcCC--HH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL--KINSILGTTLIDMYMKLGC--VD 478 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~--~~ 478 (798)
...+.+++++-.+.....|+.-+...-+....+.-+..++++|+.+|+.+.+... -.|..+|+.++ |.+..+ +.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH
Confidence 6678889999888888888766555555555555678899999999999998842 13566676665 444332 22
Q ss_pred H-HHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 479 N-ALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 479 ~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
- |..++ .+.+--+.|.-.+..-|...++.++|+..|++..+ +.|... .|+.+..-|....+...|.+-++.+++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2 22222 23333456777778889999999999999999998 456654 677777889999999999999999976
Q ss_pred CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH
Q 003746 557 HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 557 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
+.| |-..|-.|+.+|.-.+...-|+-+|++. ..+| |...|.+|..+|.+-++.++|++.|.+++.....+...+.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 566 6888999999999999999999999998 5666 7899999999999999999999999999998877788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
.|+++|.+.++.++|...+++-.+.-.. . | ...|++.++...|.+-+.+++.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~--e----------------g-~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSEL--E----------------G-EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh--h----------------c-ccchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887652210 0 0 0135566677777777766653
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.4e-11 Score=129.24 Aligned_cols=276 Identities=13% Similarity=0.070 Sum_probs=214.3
Q ss_pred CHHHHHHHHHhcCCC--CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 375 SVEKARALFDAMIEK--DV-VSWSTMISGYAQHDQFSETLSLFMEMQHHG-I-RPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
+..+|...|...+.. |. .....+..+|...+++++|.++|+...+.. . .-+..+|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467788888876543 32 334567778888899999999999887642 1 11456677776543221 112222
Q ss_pred -HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003746 450 -AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525 (798)
Q Consensus 450 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 525 (798)
..+++. -+..+.+|.++.++|.-.++.+.|++.|++..+-|. .+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 345788999999999999999999999999887654 5777777778888999999999998876 555
Q ss_pred CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 526 NEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 526 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
... .|..+...|.+.++++.|.-.|+++++ +.| +.....++...+-+.|+.|+|+++++++ ..+| |+..-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 677888899999999999999999965 777 4777788899999999999999999998 4444 55555556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..+...+++++|+..+|++.++.|++...+.+++.+|.+.|+.+.|+.-|.-+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 67777889999999999999999999999999999999999999999999887776544
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.7e-10 Score=110.23 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=159.5
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
.+.+...+.+-|.-.++.++|...|++..+-| ...|+.|..-|..-.+...|++-++...+-+ +.|...|-.+.++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 34566677788888899999999999877644 5689999999999999999999999999842 3456689999999
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 613 (798)
|.-.+...-|+-+|+++.+ ++| |...|.+|.+.|.+.+++++|.+.|.+. .-+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999865 677 6899999999999999999999999988 223356788999999999999999
Q ss_pred HHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 614 GERVGRKLVE-------LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 614 A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
|...+++-++ .+|+...+..-|+.-+.+.+++++|..+-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999886 345444455568888899999999987665443
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.2e-08 Score=102.51 Aligned_cols=474 Identities=13% Similarity=0.105 Sum_probs=307.6
Q ss_pred hcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC--Cc-hHHHHHHHHHhhcCCHHHHHHHH
Q 003746 178 VCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--NI-IASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~y~~~g~~~~A~~~f 251 (798)
..+++..|+.+|++.. .++...|---+..-.++..+..|..++++.... -+ ..|--.+.|=-..|++..|+++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3455666777776654 344556666666666777777777777665432 11 23444455555668888888888
Q ss_pred hcCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHh-CC-cc
Q 003746 252 KEMP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI-GI-EC 327 (798)
Q Consensus 252 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~-~~ 327 (798)
++-. +|+...|++.|.--.+-...+.|..+|++.+- +.|+..+|....+-=-+.|....+++++..+++. |- ..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 7643 57888888888888888888888888888776 4588888877777777778888888888887764 21 22
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCC-hhhHHHHHHHHHhcCC---HHHHHHH-----HHhcCCC---CH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDA----GHNLD-LISWNSMISGYLKCGS---VEKARAL-----FDAMIEK---DV 391 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~---~~~A~~~-----~~~m~~~---~~ 391 (798)
+..++++....=.++..++.|.-+|+- .++.. ...|..+..-=-+-|+ ++++.-- ++.+... |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 344555666666667777788777753 22221 2334444433334444 3444322 2233322 55
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hcccchhHHHHHHHHHHHcCCCCcH
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-------ATLVSVISAC---THLVALDQGKWIHAYIRKNGLKINS 461 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~ 461 (798)
.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+++++...++. ++-..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 67777777777788999999999988764 55521 1122221222 2457888888888888873 44445
Q ss_pred HHHhHHHhhHH----hcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 462 ILGTTLIDMYM----KLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 462 ~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
+++.-+=-+|+ ++.++..|.+++..... |...++..-|..-.+.++++.+..+|++.++-+ +-|-.+|.....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHH
Confidence 55555544553 67888899998877653 344566777777788889999999999998853 224457777776
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACK-----KHG 609 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~g 609 (798)
.-...|+.+.|..+|+-++....+.-....+.+.|+.=...|.++.|..+++++ ...+-..+|-++..--. +.+
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 667789999999999988775444444567777888888899999999999887 33445557776655433 233
Q ss_pred -----------ChhHHHHHHHHHHh----cCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 610 -----------DHEMGERVGRKLVE----LQPDHDGF--HVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 610 -----------~~~~A~~~~~~~~~----~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+...|..+|+++.. ..|..... +...-+.-...|.-.+...+-.+|.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 56678888888764 34432221 2223344455576667666666664
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.6e-11 Score=127.23 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=190.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC--CCCcHHHHhHHHhhHHhcCCHHH-HH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG--LKINSILGTTLIDMYMKLGCVDN-AL 481 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~-A~ 481 (798)
-+.++|+.+|.+.... +.-.......+..+|...+++++++.+|+.+.+.. ..-+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 33344677778889999999999999999998763 22356677766644332211111 12
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 482 EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 482 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.+. .+....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ .
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 222 22234578999999999999999999999999988 567 44577777777777888999999998874 4
Q ss_pred CCcchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 561 PNSKHYGC---MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 561 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.+..+|++ |+-.|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|++++++++.++|.++-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 56667775 456789999999999999988 6667 566777788888899999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.++...+++++|...++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999998873
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=2.2e-10 Score=122.73 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=137.5
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLV--SVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 479 (798)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 33322211 11234444555555555555555443 2234455555555666666666
Q ss_pred HHHHHhhcCCCCcc-----------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 480 ALEVFHGTEEKGVS-----------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 480 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
|.+++..+.+.... +|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66555555433211 2222233333333444444555544332 23344566666777777777777777
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
.+++..+ ..|+.... ++......|+.+++.+.+++. ...| |...+..+...|...+++++|.+.|+++++..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7777654 23333211 222223447777777777766 3334 455667777788888888888888888888888
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 360 ~~~-~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAY-DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 45677778888888888887777553
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.6e-10 Score=113.46 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
++.....-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33333444455556677777777777766542 334444444445555666655555554555544 3445667777777
Q ss_pred hHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
-|.-.|+..+|++.|.+...-| -..|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 7778899999999999877655 358999999999999999999998887663 121222344555568888999999
Q ss_pred HHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 547 HRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMP--------MSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.++|.++. ++.| |+.+++-+.-+....+.+.+|..+|+..- .++ ...+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999885 5777 58888888888888999999999998761 112 45578999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+++++.+.|.++.++..++-+|...|+++.|.+.|.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=7.4e-10 Score=110.13 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=108.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALE 482 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 482 (798)
.+|++++|.+.|++.....-.-....|+.-+ .+-..|++++|...|-.+... +..+..+...+.+.|.-..+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3456666666666655432211112222111 233455666665554433221 12244455555566666666666666
Q ss_pred HHhhcC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Q 003746 483 VFHGTE---EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559 (798)
Q Consensus 483 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 559 (798)
++.+.. ..|+....-|...|-+.|+-.+|.+.+-+--+. ++-|..|.--|...|....-+++++.+|++.. -+
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---li 655 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LI 655 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hc
Confidence 655433 235555666666666666666666554443332 23344455555555556666666777776653 25
Q ss_pred cCCcchHHHHHHH-HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 003746 560 EPNSKHYGCMVDL-LGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHG 609 (798)
Q Consensus 560 ~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 609 (798)
.|+..-|..|+.. +.|.|.+++|.++++.. .++.|......|+..|...|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 6666666666543 34567777777777666 34456666666666666555
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=7.2e-10 Score=119.53 Aligned_cols=278 Identities=12% Similarity=0.046 Sum_probs=128.6
Q ss_pred hCCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--HHHHHHHHHHHHhCCChHHHHHH
Q 003746 341 SCGEITTAEKLFDAGHN--LDL-ISWNSMISGYLKCGSVEKARALFDAMIE--KD--VVSWSTMISGYAQHDQFSETLSL 413 (798)
Q Consensus 341 ~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l 413 (798)
..|+++.|++.+.+..+ |++ ..+-.......+.|+.+.|...|.+..+ ++ ....-.....+.+.|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666654222 222 2223333445566777777776666422 11 22222335556667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH-------HhcCCHHHHHHHHhh
Q 003746 414 FMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY-------MKLGCVDNALEVFHG 486 (798)
Q Consensus 414 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~ 486 (798)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-...+ ......+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77776653 1234455566666667777777777777766665433222211111111 111222333344444
Q ss_pred cCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 487 TEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF---VGVLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 487 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
.+. ++...+..++..+...|+.++|++++++..+. .||.... ..........++.+.+.+.+++..+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 443 24555666666666666666666666666653 3333210 111111122244444444444443321111
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIES--M-PMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112333444444444444444444442 1 23344444444444444444444444444443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=5.4e-10 Score=119.79 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=148.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHH
Q 003746 372 KCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 448 (798)
..|+.+.|...++.+.+ .++.....+...|.+.|++++|.+++.++.+.+..++. .+..+-
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------- 228 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------- 228 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------
Confidence 66666666666666543 25566677777777888888888888887776543221 111000
Q ss_pred HHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003746 449 HAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP 525 (798)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 525 (798)
...+..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .|
T Consensus 229 ------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 229 ------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 00111222222233345555666666653 35667777888888888888888888888773 44
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLG 603 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 603 (798)
|.. ..++.+....++.+++.+..+...++ .| |...+.++..++.+.|++++|.+.|++. ...|+...+..|..
T Consensus 295 ~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred CHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 442 11233334558888899888888764 34 4667888899999999999999999887 66788888888999
Q ss_pred HHHHcCChhHHHHHHHHHHhcC
Q 003746 604 ACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
.+.+.|+.++|.+.+++.+.+.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987753
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.2e-08 Score=100.71 Aligned_cols=383 Identities=13% Similarity=0.122 Sum_probs=192.5
Q ss_pred HhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHH
Q 003746 238 FGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGT 314 (798)
Q Consensus 238 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (798)
=-..+++..|+.+|++... +++..|---+..-.++.+...|..++++.+..=...|.. |-..+..=-.+|++..++
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHH
Confidence 3345677888888887764 466677777888888888888888888776522111221 111122222345555555
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh--cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 003746 315 SVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA--GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV 392 (798)
Q Consensus 315 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (798)
+++..-.+ ..|+...+++.|++=.+...++.|..++++ ..-|++.+|--...-=.++|++..|+.+|..
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer------- 232 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER------- 232 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence 55554442 345555555555555555555555555544 3334444444444444445555555544444
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcccchhHHHHHHHHHHHcCCCC-cHHHHhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC----THLVALDQGKWIHAYIRKNGLKI-NSILGTTL 467 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 467 (798)
..+. --|...-..++.++ .+...++.|.-++..++..-... ....|..+
T Consensus 233 ------------------------Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 233 ------------------------AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred ------------------------HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3321 01111111222222 22334455555555555432111 12233333
Q ss_pred HhhHHhcCCHHHHHHHH--------hhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------H
Q 003746 468 IDMYMKLGCVDNALEVF--------HGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-------T 529 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t 529 (798)
+..--+-|+........ +.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 33222333322222111 111112 3345555555555566666666666666653 444221 1
Q ss_pred HHHHHHHH---HhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003746 530 FVGVLGAC---RHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL----GRAGMLKEAEELIESM-PMSPDVATWGA 600 (798)
Q Consensus 530 ~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 600 (798)
|.-+=-+| ....+++.+.++++..++ +-| ...++.-+--+| .|+.++..|.+++-.. +.-|-..++..
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 11111111 234566666666666654 333 344444333333 2556666666666554 55566666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.|..-.+.++++....++++.++..|.+..++...+..-...|+++.|..+|....+...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 666656666666666666666666666666666666665666666666666666655443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=1.3e-09 Score=117.64 Aligned_cols=278 Identities=12% Similarity=0.055 Sum_probs=202.9
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccchhHHH
Q 003746 372 KCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEA--TLVSVISACTHLVALDQGK 446 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~ 446 (798)
..|+++.|++.+....+. ....+-.....+.+.|+++.|.+.+.+..+. .|+.. ............|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 689999999999887543 2334445566778889999999999998764 35442 3333466778899999999
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcc---hHH----HHHHHHHHcCChHHHHHHHHHHH
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVS---SWN----ALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~----~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
..++.+.+.. +-+..+...+...|.+.|++++|.+.+....+.++. .+. ....++...+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 446678889999999999999999999988865322 121 11122233334444455666666
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcch---HHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 520 KSGV---TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH---YGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 520 ~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 5421 126667888888999999999999999999874 354331 111222223457888888888776 334
Q ss_pred C-CH--HHHHHHHHHHHHcCChhHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 593 P-DV--ATWGALLGACKKHGDHEMGERVGR--KLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 593 p-~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
| |+ ....++...|.+.|++++|.+.|+ .+++..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 34 677899999999999999999999 57788898765 6699999999999999999998754
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=2.8e-07 Score=96.49 Aligned_cols=468 Identities=13% Similarity=0.166 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhh
Q 003746 166 VYVNNTLINMYAVCGDLSAARKLFDESPV-----LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240 (798)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~ 240 (798)
+.+|-.-+....+.|++..-++.|++... .....|...+.-....|-++-++++|++..+-++...+-.|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44566666666677777777777765331 1223566666666666677777777777776666666666777777
Q ss_pred cCCHHHHHHHHhcCCCC----------------------------------------------Cc--ccHHHHHHHHHhc
Q 003746 241 KGNVAEACRLFKEMPKK----------------------------------------------DL--VSWSALISCYEQN 272 (798)
Q Consensus 241 ~g~~~~A~~~f~~~~~~----------------------------------------------~~--~~~~~li~~~~~~ 272 (798)
.+++++|.+.+..+... |. ..|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777776666555321 11 2477777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH----------------------HHHHHHhCC-----
Q 003746 273 EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV----------------------HALAVKIGI----- 325 (798)
Q Consensus 273 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i----------------------~~~~~~~g~----- 325 (798)
|.+++|.++|++.+..- .+..-|..+.++|+.......+..+ ++.+.....
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 77777777777665532 2233344444444432211111111 111110000
Q ss_pred ------ccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003746 326 ------ECYINLQNALIHMYSSCGEITTAEKLFDA---GHNL------DLISWNSMISGYLKCGSVEKARALFDAMIEKD 390 (798)
Q Consensus 326 ------~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (798)
+.++..+..-+..| .|+..+-...|.+ ...| -...|..+.+.|-..|+++.|+.+|++...-+
T Consensus 340 VlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 00000111111110 1112222222211 0000 11234444445555555555555555443221
Q ss_pred -------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHH
Q 003746 391 -------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 391 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
..+|..-...=.++.+++.|+++.+.... .|.... +. +...+..-++ .+..+..+
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~-~yd~~~pvQ~----------rlhrSlki 479 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LE-YYDNSEPVQA----------RLHRSLKI 479 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hh-hhcCCCcHHH----------HHHHhHHH
Confidence 11233333333344444444444443322 111100 00 0000000000 01113455
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH-
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII---GFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACR- 538 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~- 538 (798)
|+..++.-..+|-++....+++++.+--+.|-..++. .+-.|.-++++.++|++-+..=--|+.. .|+..|.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 6666676677788888888888777655444443332 2335566777888777765543345543 3444443332
Q ss_pred --hcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCC
Q 003746 539 --HMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPD--VATWGALLGACKKHGD 610 (798)
Q Consensus 539 --~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~ 610 (798)
..-.++.|..+|++.++ |.+|. ...|-.....=.+.|....|+++++++ .+++. ...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23368888888888876 55554 222333333334567888888888887 33332 3456666654433333
Q ss_pred hhHHHHHHHHHHhcCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 003746 611 HEMGERVGRKLVELQPDHDGFHV--LLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...-..+|+++++.-|++..--. -.+.+-.+.|..+.|+.++..-.+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 45566788888887777544333 345666777888888888865543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.2e-11 Score=126.50 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=98.7
Q ss_pred hcCCHHHHHHHHHhc-C----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHH
Q 003746 372 KCGSVEKARALFDAM-I----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK 446 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 446 (798)
+.|++++|.++++.. . ..|+..|..+.......+++++|++.++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 445555555555321 1 113334444444445555566666666655544321 23333333333 4555566665
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-----EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
++.....+.. ++...+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.+++..+
T Consensus 98 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~- 174 (280)
T PF13429_consen 98 KLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE- 174 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_pred cccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 5555443332 344445566667777777777777777643 23456777788888888888888888888888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 522 GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 522 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
..|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|...+++. ...| |+.+.
T Consensus 175 -~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 -LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp -H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred -cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 4665 446777888888889999888888888664 2456777788889999999999999999887 3234 67777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+..++...|+.++|.++.+++++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 8888899999999999998888764
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=6e-10 Score=110.85 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=165.1
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
.....+..+...|.+.|++++|.+.|++..+. +...+..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566777888999999999999999876643 45678888999999999999999999998853 234456777888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 613 (798)
.+...|++++|.+.++++.+..........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999763222223567778899999999999999999887 3334 46788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999999887754
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=1.1e-07 Score=102.84 Aligned_cols=528 Identities=13% Similarity=0.068 Sum_probs=305.0
Q ss_pred CCCCCChHHHHHHHhh-ccC--hHHHHHHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHH
Q 003746 24 FKPTINLSILETHLQK-CQS--FKQFTQILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFN 100 (798)
Q Consensus 24 ~~~~~~~~~~~~~l~~-~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~ 100 (798)
.+..|+.-+|.+++.+ |.. .+.+. ++..|.-..+.-+..+++.++. ... ..++.+.+. .|...+|+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~--sh~-~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVA--SHK-EANDAENPK-------EPLADTYT 87 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHh--ccc-ccccccCCC-------CCchhHHH
Confidence 3456777788887654 543 44444 8998888887778888899998 766 777777665 58888999
Q ss_pred HHHHHHHcCCCchHHHHHHHH-HHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh
Q 003746 101 TMMRAYIQRNVPQQAICLYKL-MLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL-KAGFDSDVYVNNTLINMYAV 178 (798)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~ 178 (798)
.+..+|.++|+... ++..++ |. .+...+...|.......++-.+. ..++-||. ..++....-
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~ 151 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVL 151 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHH
Confidence 99999999999866 333333 21 12223333333322222222111 11222333 334445556
Q ss_pred cCChHHHHHHHccCCCC--CcchHHHHHHHHHh-CCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCHHHHHHHHhcC
Q 003746 179 CGDLSAARKLFDESPVL--DLVSWNSILAGYVN-ADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKEM 254 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 254 (798)
.|.++.+++++..+|.. +. ..-.++.-... ...+++-...-+...+ +++.++.+++..-...|+++.|..++.+|
T Consensus 152 eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 67778888888777721 11 11112333332 2334444444444554 78999999999999999999999999999
Q ss_pred CCCC----cc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc-
Q 003746 255 PKKD----LV-SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY- 328 (798)
Q Consensus 255 ~~~~----~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~- 328 (798)
.++. .. -|-.+.. .++...+..+++-|.+.|+.|+..|+.-.+..+...|....+.. |.+.+
T Consensus 231 ke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~h 298 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAH 298 (1088)
T ss_pred HHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhh
Confidence 8752 22 3444443 78888899999999999999999999988888877544322211 11111
Q ss_pred ---hhHHHHHHHHHHhCCCHHH-----HHHHHH----hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-------
Q 003746 329 ---INLQNALIHMYSSCGEITT-----AEKLFD----AGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK------- 389 (798)
Q Consensus 329 ---~~~~~~li~~y~~~g~~~~-----A~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 389 (798)
..++.++++......+++. ....+. .+.......|...+... .+|.-++...+-..+..+
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcc
Confidence 1122222222111111111 111111 13333334444433322 356656666665555432
Q ss_pred CHHHHHHHHHHHHhC----------------------CChHHHHHHHHHHHHcCCCCCHH--------------------
Q 003746 390 DVVSWSTMISGYAQH----------------------DQFSETLSLFMEMQHHGIRPDEA-------------------- 427 (798)
Q Consensus 390 ~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~m~~~g~~pd~~-------------------- 427 (798)
++..+..++.-|.+. ....+..++.... .||..
T Consensus 378 ~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 378 NVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccch
Confidence 333343333333221 1111111111111 22211
Q ss_pred --------HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc------c
Q 003746 428 --------TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV------S 493 (798)
Q Consensus 428 --------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~ 493 (798)
.-..++..|++.-+..++...-+.....-+ ...|..||+......+.+.|..+.++...+|. .
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 112223333333333333322222222111 25688999999999999999999999887764 3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
-+..+.....+++....+..++++|.+.-. .|+ ..++--++..-...|+.+.-.+.++-+.. +|+.-+ .-++.
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~ 604 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWM 604 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceE
Confidence 578888999999999999999999987432 232 34677777888888888888887776643 455332 33445
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 003746 572 LLGRAGMLKEAEELIESM--PMSPDVATWGALLGAC 605 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 605 (798)
...+.++...|.+.++.. ..+|.+.....+...+
T Consensus 605 vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv 640 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLV 640 (1088)
T ss_pred EEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHH
Confidence 566778887777776554 2344444444444333
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=1.8e-07 Score=97.89 Aligned_cols=514 Identities=12% Similarity=0.104 Sum_probs=230.1
Q ss_pred CCCChhHHHHhhhcC----CC-CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHH
Q 003746 77 PFIEMSYSFKIFAFL----ES-PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGK 151 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~ 151 (798)
+.|++..-++.|+.. |. .....|...+.-.-..|-++-++.+|++-++.. | ..-.--+.-++..++.++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHH
Confidence 556666666666643 21 233456666666666666667777777666322 2 22333444555666666666
Q ss_pred HHHHHHHHhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHccCCC--CCc--chHHHHHHHHHhCCCHHHHHH
Q 003746 152 LIHDHVLKAG------FDSDVYVNNTLINMYAVCGDLS---AARKLFDESPV--LDL--VSWNSILAGYVNADNVEEAKF 218 (798)
Q Consensus 152 ~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~--~d~--~~~~~li~~~~~~g~~~~A~~ 218 (798)
+.+..++... -+.+-..|..+-+..++.-+.- ....++..+.. +|. ..|++|..-|.+.|.++.|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666554221 1445555555555555543321 22233333332 232 356777777777777777777
Q ss_pred HHhhCCCC--CchHHHHHHHHHhhcC----------------------CHHHHHHHHhcCCCC---------------Cc
Q 003746 219 IYNKMPER--NIIASNSMIVLFGRKG----------------------NVAEACRLFKEMPKK---------------DL 259 (798)
Q Consensus 219 ~~~~m~~~--~~~~~~~li~~y~~~g----------------------~~~~A~~~f~~~~~~---------------~~ 259 (798)
+|++.... .+.-++.+-+.|+... +++-...-|+.+..+ |+
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 77665442 2222223333332211 111122222222110 12
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------chhHHHHHHHHhccCchHHHHHHHHHHHHhCCccc---hh
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVD------EVVVVSVLSACANLTVVKAGTSVHALAVKIGIECY---IN 330 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~ 330 (798)
..|..-.. ...|+..+-...|.+.... +.|- ...|..+.+-|-..|+++.|+.++....+..++.- ..
T Consensus 350 ~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 350 EEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 22222221 2234445555555554432 1111 11233344444455555555555555555433221 33
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHh
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAG-HNLDLISWNSMISGYLKCGSVEKARALFDAMI------EKDVVSWSTMISGYAQ 403 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~ 403 (798)
+|..-.++=.+..+++.|.++.+.. .-|.... +..|+.+. .++...|...++.--.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----------------~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----------------LEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----------------hhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444555555555555431 0000000 00000000 0022234444444444
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH-HHHhHHHhhHHh---cCCHHH
Q 003746 404 HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-ILGTTLIDMYMK---LGCVDN 479 (798)
Q Consensus 404 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~ 479 (798)
.|-++....+|+++.+..+.......+.. --+-...-++++.++++.-+..--.|++ .+|+.-+.-+.+ ..+++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyA-mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYA-MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44444444555554443322111111110 0111222334444444433322111211 223333222222 123555
Q ss_pred HHHHHhhcCCCC-c---ch-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 480 ALEVFHGTEEKG-V---SS-WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 480 A~~~~~~~~~~~-~---~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
|+.+|++..+.= . .+ |-.-...--.+|....|+.++++.... +++... .|+..|.--...=-+.....+|++
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 555555443310 0 00 111111112356666777777775543 444432 456555433333334556677777
Q ss_pred HHHhCCCcCCc---chHHHHHHHHHhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 553 MIQEHRLEPNS---KHYGCMVDLLGRAGMLKEAEELIESMP--MSP--DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 553 ~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.++. -|+. ...--..++=.+.|..+.|..++.-.. .+| +...|.+-=.--.+|||-+ .+++|+.
T Consensus 648 aIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned----T~keMLR 718 (835)
T KOG2047|consen 648 AIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED----TYKEMLR 718 (835)
T ss_pred HHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH----HHHHHHH
Confidence 7763 3442 233344566678899999998887651 223 5667888777778899844 4444444
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=8.1e-09 Score=110.03 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHc-----CC-CCcH-HHHhHHHhhHHhcCCHHHHHHHHhhcCC-------CC-
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKN-----GL-KINS-ILGTTLIDMYMKLGCVDNALEVFHGTEE-------KG- 491 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 491 (798)
.|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666677777777777777666543 21 1222 2233466677888888888877776542 11
Q ss_pred ---cchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--C
Q 003746 492 ---VSSWNALIIGFAMNGLADKSLEMFSEMKK-----SGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHR--L 559 (798)
Q Consensus 492 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 559 (798)
..+++.|...|...|++++|...+++..+ .|..+..+ -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34677788888888888887777766543 23333322 466777889999999999999998876543 2
Q ss_pred cCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh--
Q 003746 560 EPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-- 623 (798)
Q Consensus 560 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 623 (798)
.++ ..+|+.|..+|...|++++|+++++++ +..+. ...++.|...|.+.++++.|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999887 11222 45678899999999999999999988865
Q ss_pred --cCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 624 --LQPDH---DGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 624 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
..|+. ...|..|+.+|...|++|+|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35554 4567789999999999999999988875
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=1e-07 Score=102.04 Aligned_cols=416 Identities=13% Similarity=0.103 Sum_probs=236.6
Q ss_pred CchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhH-HHHHH
Q 003746 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVV-VSVLS 302 (798)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 302 (798)
+..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.++++-....-.|+..+. ...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 444455555666667777777777766543 24457888888888888888888888776554434544333 33333
Q ss_pred HHh-ccCchHHHHHHHHHHHHh--CC--ccchhHHHHHHHHHHhC----CC-------HHHHHHHHHhcC---CCChhhH
Q 003746 303 ACA-NLTVVKAGTSVHALAVKI--GI--ECYINLQNALIHMYSSC----GE-------ITTAEKLFDAGH---NLDLISW 363 (798)
Q Consensus 303 a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~----g~-------~~~A~~~~~~~~---~~~~~~~ 363 (798)
.|. +.+..++|...-..++.. +. ......+-.+.-.|... .. ..++.+.+++.. ..|+...
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 343 446666666655555552 11 11223333333334321 11 223344444421 2222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 364 NSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
--+---|+-.++++.|.....+.. ..+...|.-+.-.+...+++.+|+.+.+..... ..-|..-...-+..-...
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhc
Confidence 222233555566666666655542 335667777777777777777777777655443 111111111122222234
Q ss_pred cchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC---C--CC-cchHHHHHHHHHHcCChHHHH
Q 003746 440 VALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMKLGCVDNALEVFHGTE---E--KG-VSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~-~~~~~~li~~~~~~g~~~~A~ 512 (798)
++.+++......+...= -.+. ....|+-....+.+..+. . .| +.++..+..-.... .+.+.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~ 628 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAG 628 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcc
Confidence 55555544444433210 0000 001111122222222221 0 11 22232222222111 11110
Q ss_pred HHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHH
Q 003746 513 EMFSEMKKSGVTPNEI--------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 513 ~l~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
.-.. |...-+.|+.. .|......+.+.+..++|...+.+..+ +.| ....|......+...|.++||.
T Consensus 629 se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 0000 22222223221 244555677888999999988888743 455 4777888888999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 584 ELIESM-PMSPD-VATWGALLGACKKHGDHEMGER--VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 584 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++...|+.++|.+.|....+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 998877 66775 6688999999999999999988 9999999999999999999999999999999999999887643
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=9.9e-09 Score=98.56 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=180.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCC--cHHHHhHHHhhHHhcCCHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKI--NSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 479 (798)
-.++.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|+++|..+.++. ... -....-.|..-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467888888888887742 2223344566677788889999999998888762 221 12344556777899999999
Q ss_pred HHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 480 ALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 480 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
|+.+|..+.+.+. .....|+..|-+..+|++|++.-+++...+-.+..+ .|.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887543 466778999999999999999999999877666654 466677777778899999999998
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..+ ..|+ +..--.+.+.+...|+++.|.+.++.. ...|+ ..+...|..+|...|+.+++...+.++.+..|+.
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 876 3454 455556788999999999999999888 44455 3467888999999999999999999999888776
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHH
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
... ..+...-....-.++|..+..
T Consensus 283 ~~~-l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 283 DAE-LMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred cHH-HHHHHHHHHhhChHHHHHHHH
Confidence 433 334444333333444444433
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=7.5e-08 Score=97.56 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=167.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHH
Q 003746 400 GYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDN 479 (798)
Q Consensus 400 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 479 (798)
-+.-.|+...|..-|+........++.. |.-+...+....+.++....|..+.+.+. .++.+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 3455688888888888888764433332 66666778888888999999998888753 356677777778888899999
Q ss_pred HHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 480 ALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 480 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
|..-|++...-+ +..|--+..+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 999999877643 556777777777888999999999999885 333345888888999999999999999999875
Q ss_pred CCCcCCc---------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 557 HRLEPNS---------KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 557 ~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
++|+. .+--.++-.- =.+++..|.+++.+. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55541 1111222111 238899999999988 5666 46689999999999999999999999987654
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1.7e-06 Score=91.60 Aligned_cols=379 Identities=15% Similarity=0.163 Sum_probs=226.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhc--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 233 SMIVLFGRKGNVAEACRLFKE--MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
+-|..|.|.|....|.+.-.. ....|......+..++.+..-+++|=++|+++.. +...+..+.+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 456778888877777665432 1223444455555566666666666666666543 22222223222223
Q ss_pred HHHHHHHHHHHHhCCccchh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003746 311 KAGTSVHALAVKIGIECYIN-LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK 389 (798)
Q Consensus 311 ~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (798)
..|.++-... ++..++ .-.+-.+-+...|+++.|...|-+.. ....-|.+.....++.+|..+++.+..+
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 3333332221 122111 11233344445566666655553211 1112233444667788888888888776
Q ss_pred CHHH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH
Q 003746 390 DVVS--WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467 (798)
Q Consensus 390 ~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 467 (798)
++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-... .|.+.....|-+-
T Consensus 762 k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAK 830 (1636)
T ss_pred ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHh
Confidence 6554 6667778888888888888886431 2344566777888888776665443 3445556666666
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 545 (798)
..-.-+.|++.+|.+++-.+..|+. -|..|-++|..+..+++.++- .|+. .|-..+..-+...|++..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhH
Confidence 6667778888888888877766663 467788888888888877653 3333 366667777888899999
Q ss_pred HHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC---C-CHHHHHH------HHHHHHHcCChhHHH
Q 003746 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMS---P-DVATWGA------LLGACKKHGDHEMGE 615 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~------l~~~~~~~g~~~~A~ 615 (798)
|...|-+.- -|.+-+++|...+.+++|.++-+.-+-. . -...|.. -+..+.++|-.+.|+
T Consensus 901 ae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 901 AEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 988876552 2567788999999999999887765311 0 1122321 222334555544444
Q ss_pred HHH------HHHHh-----cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 616 RVG------RKLVE-----LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 616 ~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
... +-+++ .....+..+..++..+...|++++|-+.+-...+.+.
T Consensus 971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 332 11111 2233456778888888999999999888877665543
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.1e-11 Score=87.14 Aligned_cols=50 Identities=26% Similarity=0.474 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASAL 143 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~ 143 (798)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=8.9e-08 Score=92.88 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=111.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPL-LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (798)
+.-+..+.++..|+.+++.-...+-+-. ..... +..++-..|++++|..++..+.+.. .++..++-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4455667777788777776553332211 12222 2333456788888888888777654 5666677777777777788
Q ss_pred hHHHHHHHccCCCCCcchHHHHH-HHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--CC
Q 003746 182 LSAARKLFDESPVLDLVSWNSIL-AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK--KD 258 (798)
Q Consensus 182 ~~~A~~~f~~~~~~d~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~ 258 (798)
+.+|..+-...+ +....+-++ ..--+.|+-++-+.+-..+. ....-.-+|.++..-.-.+++|..++.++.. |+
T Consensus 107 Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 107 YIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 888887766544 222233333 33344555444444333332 2233344555555555667888888877654 34
Q ss_pred cccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHh
Q 003746 259 LVSWSAL-ISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACA 305 (798)
Q Consensus 259 ~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 305 (798)
-...|.- .-+|.+..-++-+.+++.--.+. -|| .|+..=+.+|.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd-StiA~NLkacn 228 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD-STIAKNLKACN 228 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC-cHHHHHHHHHH
Confidence 4455543 34666777777777777665542 233 34444444543
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.1e-08 Score=98.28 Aligned_cols=306 Identities=12% Similarity=0.128 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhcCCC-C------HHHHHHHHHHHHhCCChHHHH
Q 003746 342 CGEITTAEKLFDAGHNLDLISW---NSMISGYLKCGSVEKARALFDAMIEK-D------VVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~~A~ 411 (798)
..+.++|.++|-.+.+.|+.|+ -+|.+.|.+.|.+|.|.++-+.+.++ | ....-.|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556666666665555554443 34555566666666666666555432 2 122334455566666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG 491 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 491 (798)
++|..+.+.|. .-......++..|-...++++|..+-+.+.+.+-.+...- +..
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQ---------------------- 181 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHH----------------------
Confidence 66666555431 1223344455555555555555555555554432221100 000
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV-GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
.|--+...+....+.+.|..++.+..+. .|+.+--+ .+.......|+++.|.+.++.+.+. +..--..+...|.
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 1222233333344445555555554442 23322211 2223444455555555555555432 1111134444555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChhH
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH--ASKGRWDD 647 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~ 647 (798)
.+|...|+.++...++.++ ...+....-..+..--....-.+.|...+.+-+...|+--.+|-++..-. +..|++.+
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhh
Confidence 5555555555555555444 22233333333333333333345555555555566666555444443222 23466888
Q ss_pred HHHHHHHHHhCCCccCCccceEEECCEEEEE
Q 003746 648 VLEVRGMMVRRGVVKIPGCSMIEANGIIHEF 678 (798)
Q Consensus 648 a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~ 678 (798)
..-.++.|....++..|.+.....+-..|+|
T Consensus 337 sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 337 SLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8888888887777766766554444444433
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.2e-07 Score=94.14 Aligned_cols=257 Identities=15% Similarity=0.096 Sum_probs=158.7
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHH
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDAGHN---LDLISWNSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTM 397 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~l 397 (798)
+...++.+.....+-+-..+++.+..++++...+ +....+..-|.++...|+..+-..+=.++.+. ..++|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 3455666677777777788888888888876443 33445555566777777766655555555432 56788888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHc--C-CCCcHHHHhHHHhhHHh
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKN--G-LKINSILGTTLIDMYMK 473 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~ 473 (798)
..-|..-|+..+|.+.|.+...- .|. ...|.....+++..+.-++|...+..+-+. | ..|. .| +.--|.+
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~ 392 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMR 392 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHH
Confidence 88888888888888888776542 222 345667777788888888888777766654 2 2222 22 3334777
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCcHH
Q 003746 474 LGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS--GVTP----NEITFVGVLGACRHMGLVD 544 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~ 544 (798)
.++++-|.+.|..... .|+...+-+.......+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+..+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8888889888887553 46777888877777788888999888876621 0000 1223444445555555555
Q ss_pred HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 545 EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+|+..+++.+. ..| +..++.++.-.|...|.++.|.+.|.+.
T Consensus 473 eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 473 EAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555443 222 3444444444444444444444444433
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.5e-07 Score=97.85 Aligned_cols=439 Identities=14% Similarity=0.115 Sum_probs=233.2
Q ss_pred HHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHH--HHHHH--hhcCCHH
Q 003746 173 INMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNS--MIVLF--GRKGNVA 245 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--li~~y--~~~g~~~ 245 (798)
++.+.+.|++++|.+..+.+. +.|...+..-+-++++.+++++|+.+.+.-.... +++. +=.+| .+.++.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHH
Confidence 344555556666655555443 2233445555555666666666665544332211 1111 12233 3567788
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCch-hHHHHHHHHhccCchHHHHHHHH-HHHHh
Q 003746 246 EACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEV-VVVSVLSACANLTVVKAGTSVHA-LAVKI 323 (798)
Q Consensus 246 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~-~~~~~ 323 (798)
+|...++...+.+..+...=...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+ ..-. .+...
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~q~v 167 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLLQSV 167 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHHHhc
Confidence 88877775544454455555677788888888888888887655322111 1111111111 1111 11111
Q ss_pred CCcc--chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHh-cCCC-----CHH---
Q 003746 324 GIEC--YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDA-MIEK-----DVV--- 392 (798)
Q Consensus 324 g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~-----~~~--- 392 (798)
...| +-..+-.....+...|++.+|+++++... ++-.+ +.+. +..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhhHHHHH
Confidence 1111 11111122334455566666655554310 00000 0000 010
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHhcccchhH--HHHHHH-----------HHHH
Q 003746 393 --SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV---ISACTHLVALDQ--GKWIHA-----------YIRK 454 (798)
Q Consensus 393 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~--a~~~~~-----------~~~~ 454 (798)
.--.|.-.+...|+-++|..+|...++.. .+|....... |.+...-.++-. ....++ ....
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 11224445666788888888777777654 3343222211 112222111111 011110 0111
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALIIGFA--MNGLADKSLEMFSEMKKSGVTPNE--IT 529 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t 529 (798)
..-......-++++.+|. +..+.+.++-...+..- ...+.+++.... +.....+|.+++...-+. .|.. +.
T Consensus 303 ~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v 378 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHH
Confidence 111112233355666665 44567777777766543 334444444332 223577888888877764 4444 34
Q ss_pred HHHHHHHHHhcCcHHHHHHHHH--------HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC
Q 003746 530 FVGVLGACRHMGLVDEGHRHFN--------SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--------PMSP 593 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p 593 (798)
....+......|+++.|.+++. .+.+ .+. .+.+..+++.+|.+.++-+-|.+++++. ..++
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 5555566778999999999998 4432 233 3455667889999998877777777665 2222
Q ss_pred C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 594 D-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 594 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
. ..+|.-+...-.++|+-++|...++++++.+|++....+.+..+|+.. +.+.|..+-+.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 234444555556789999999999999999999999999998888765 466666665443
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=7.8e-08 Score=95.53 Aligned_cols=274 Identities=15% Similarity=0.117 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCChHHHHHHH
Q 003746 342 CGEITTAEKLFDAGH---NLDLISWNSMISGYLKCGSVEKARALFDAMIEK----DVVSWSTMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 342 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 414 (798)
.|++..|+++..+.- +.....|..-..+--+.|+.+.+-..+.+..+. +....-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 366666666665422 222233444444555666666666666665433 2334445555566666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH-------HHHhHHHhhHHhcCCHHHHHHHHhhc
Q 003746 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS-------ILGTTLIDMYMKLGCVDNALEVFHGT 487 (798)
Q Consensus 415 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 487 (798)
.++...+. -+.........+|.+.|++.....+...+.+.|.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66655432 23344555556666666666666666666666554333 22333333333333333333344444
Q ss_pred CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc
Q 003746 488 EE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564 (798)
Q Consensus 488 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 564 (798)
+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.+.+-++...-.+..++..+..+-.| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 42 2344444555555556666666666655555554444 1122233444444444444444444333222 4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
.+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555555555544 444555555555555555555555555555544
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=6.7e-11 Score=84.51 Aligned_cols=50 Identities=42% Similarity=0.731 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003746 389 KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438 (798)
Q Consensus 389 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 438 (798)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=2e-07 Score=92.77 Aligned_cols=280 Identities=13% Similarity=0.134 Sum_probs=190.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHH
Q 003746 272 NEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351 (798)
Q Consensus 272 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 351 (798)
.|+|.+|.++..+-.+.+-.|- ..|.....+....|+.+.+-..+..+.+..-.+...+.-+......
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----------- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----------- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----------
Confidence 4777777777777666554332 2344444455556666666666666655433444445555555555
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDA---MIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-- 426 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-- 426 (798)
..|+.+.|+.-.++ |..+++.........|.+.|++.+...++.+|.+.|+--|.
T Consensus 165 --------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 165 --------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 56666666555444 34556777777888888888888888888888887755443
Q ss_pred -----HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003746 427 -----ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG 501 (798)
Q Consensus 427 -----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 501 (798)
.++..+++-+...+..+.-+..++..-+. ...++.+..+++.-+.+||+.++|.++..+..++.-.---...-.
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh
Confidence 45666776666666666655566555433 344566667788889999999999998887765421111223334
Q ss_pred HHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
+.+-++.+.-++..++-... +..| -.+.+|...|.+.+.+.+|..+|+..++ ..|+..+|+.+.+.|.+.|+.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChH
Confidence 55677777777777766553 3333 5677888889999999999999998764 6899999999999999999999
Q ss_pred HHHHHHHhC
Q 003746 581 EAEELIESM 589 (798)
Q Consensus 581 ~A~~~~~~~ 589 (798)
+|.+..++.
T Consensus 379 ~A~~~r~e~ 387 (400)
T COG3071 379 EAEQVRREA 387 (400)
T ss_pred HHHHHHHHH
Confidence 999998875
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=9e-07 Score=93.64 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=252.8
Q ss_pred HHHHHHHHhcCChHHHHHHHcc--CCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCch------------------
Q 003746 170 NTLINMYAVCGDLSAARKLFDE--SPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNII------------------ 229 (798)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~f~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 229 (798)
-+-|..|.+.|....|.+.-.. ....|......+..++.+..-++.|=++|+++..++-.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 4557788888888777665432 22334444444444444444444444444444332110
Q ss_pred ---------HHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHH
Q 003746 230 ---------ASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSV 300 (798)
Q Consensus 230 ---------~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 300 (798)
.-..-..-+...|+++.|..-|-+.. ..---|.+......+.+|+.+++.++... .-...|..+
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~i 771 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEI 771 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHH
Confidence 00111122223344444444332211 11122345566778888888888877643 234467788
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGH--NLDLISWNSMISGYLKCGSVEK 378 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 378 (798)
...|+..|+++.|.+++-.. ..++.-|+||.+.|++++|.++-.+-. +.....|.+-..-+-+.|++.+
T Consensus 772 adhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 89999999999999887553 245778999999999999999998844 4455667777778889999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC
Q 003746 379 ARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK 458 (798)
Q Consensus 379 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 458 (798)
|+++|-.+..|+. -|..|-+.|..++.+++..+-....+ ..|-..+..-+-..|++..|..-|-..-
T Consensus 843 aeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~----- 909 (1636)
T KOG3616|consen 843 AEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG----- 909 (1636)
T ss_pred hhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh-----
Confidence 9999998888874 47788999999999988876432211 2344445556667888888877664432
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-----cchHHHH------HHHHHHcCChHHHHHH-------------
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-----VSSWNAL------IIGFAMNGLADKSLEM------------- 514 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l------i~~~~~~g~~~~A~~l------------- 514 (798)
-+.+-++||-..+-+++|.++-+.--..| ...|.-- +..+-++|..++|+..
T Consensus 910 ----d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdl 985 (1636)
T KOG3616|consen 910 ----DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL 985 (1636)
T ss_pred ----hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH
Confidence 25678889999999999998876443333 1233322 2233455555554432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--C-----cCCcchH---------HHHHHHHHhcCC
Q 003746 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR--L-----EPNSKHY---------GCMVDLLGRAGM 578 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~-----~p~~~~~---------~~l~~~~~~~g~ 578 (798)
-+-..+. -.|. .-..+..-+...|.+++|.+.+-+.++-.. + .|+..-. ..-+.++.+..+
T Consensus 986 ari~~k~-k~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dnd 1062 (1636)
T KOG3616|consen 986 ARIAAKD-KMGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDND 1062 (1636)
T ss_pred HHHhhhc-cCcc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhccc
Confidence 2211111 1111 122233345677899999887777654211 1 0110000 012334444444
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 579 LKEAEELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
+..|.++-+.- .|| +.++..-..+....|++..|+.++-++ ..|+- ..+-|...+.|.+|+++-+
T Consensus 1063 wa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~i------~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1063 WAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPDI------ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhhhheeec--CCCch------HHHHHHHhccChHHHHHHH
Confidence 44444444332 122 123333334444556666665543222 23432 2245677888888887654
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.1e-06 Score=85.47 Aligned_cols=280 Identities=11% Similarity=0.070 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHH
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLI 468 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 468 (798)
|+.....+...+...|+..+|+..|++.+.. .|+..+-.-+ .-.+...|+.+....+...+.... +.+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 6677778888888888888888888877653 3443321111 111235566666666555554321 11112222222
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
.......+++.|+.+-++..+-| +..+-.-...+.+.|+.++|.-.|+..+. +.|. -..|..|+..|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 23334567788887777665443 44444445677888999999999999887 4554 458999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCcchHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 545 EGHRHFNSMIQEHRLEPNSKHYGCMV-DLLG-RAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
||.-.-+...+. +..+..+.+.+. +.+. ....-++|.+++++. .+.|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 998887777653 333455555442 3222 233457899999887 67787 44677788889999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHH
Q 003746 621 LVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAK 700 (798)
Q Consensus 621 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 700 (798)
.+...||+ ..+..|++++...+.+.+|.+.|...... .|+.+....-++.+++
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHh
Confidence 99999986 67899999999999999999999877653 3555666666777777
Q ss_pred HHH
Q 003746 701 KLK 703 (798)
Q Consensus 701 ~~~ 703 (798)
.++
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 654
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=7.7e-06 Score=89.94 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
...|..+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-.+++..+.++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 347999999999999999999887543 35668999999999999999999999877554 4556554 56999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
+|++.+++.|-++++.. |+..-...+..-|...|.++.|.-+|... +.|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887753 78878888899999999999888777654 4577777788888888888776
Q ss_pred HHHHHhCCCccCCc
Q 003746 652 RGMMVRRGVVKIPG 665 (798)
Q Consensus 652 ~~~m~~~~~~~~~~ 665 (798)
-++......+|...
T Consensus 1243 aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVC 1256 (1666)
T ss_pred hhhccchhHHHHHH
Confidence 66665544444443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.9e-08 Score=103.08 Aligned_cols=212 Identities=17% Similarity=0.063 Sum_probs=152.6
Q ss_pred cchhHHHHHHHHHHHcC-CCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHH
Q 003746 440 VALDQGKWIHAYIRKNG-LKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLE 513 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 513 (798)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+. +...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455566666666432 222 2456777788899999999999999887643 46789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 003746 514 MFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--P 590 (798)
Q Consensus 514 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 590 (798)
.|++..+ +.|+. .++..+..++...|++++|.+.|++..+ ..|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 56764 4777788888999999999999999976 4565332222233445678899999999665 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 591 MSPDVATWGALLGACKKHGDHEMGERVGRKLV-------ELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 591 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..|+...| .......|+...+ +.++.+. ++.|+.+..|..++.+|...|++++|...|++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23333222 2233345665544 2444443 45667778899999999999999999999999887554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1.3e-08 Score=93.59 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL 572 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 572 (798)
...|.-+|.+.|+...|.+-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++.++ +.|+ ..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 45577789999999999999999998 467655 888899999999999999999999975 6774 8899999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 573 LGRAGMLKEAEELIESMPMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
+|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++++|+.+.....+.......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999983333 3568999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003746 649 LEVRGMMVRRGV 660 (798)
Q Consensus 649 ~~~~~~m~~~~~ 660 (798)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-06 Score=87.18 Aligned_cols=306 Identities=13% Similarity=0.088 Sum_probs=184.8
Q ss_pred CCCCCchhHHHHHHHHhcc--CchHHHHHHHHHHHHh-CCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 003746 289 RVMVDEVVVVSVLSACANL--TVVKAGTSVHALAVKI-GIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNS 365 (798)
Q Consensus 289 g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 365 (798)
.+.|...+....+.+++.. ++-..+.+.+..+.+. -++.++....++.+.|...|+.++|+..|++....|+.+..+
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 3445555555555554432 3333333333333332 456778888888888887777777777777654444433322
Q ss_pred H---HHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 366 M---ISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 366 l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
| .-.+.+.|+.++..++.+.+... ....|-.-....-...+++.|+.+-++..+. .|+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r-------------- 332 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPR-------------- 332 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--Ccc--------------
Confidence 2 12233555555555554444322 1223333333333444555555555444332 111
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFS 516 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 516 (798)
+...+-.-..++...|+.++|.-.|+.... -+..+|.-|+..|...|+..+|.-+-+
T Consensus 333 --------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 333 --------------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred --------------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 111111112334455666666666665432 356677777777777777777766665
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 517 EMKKSGVTPNEITFVGVL-GACR-HMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 517 ~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
...+. +..+..+...+. ..|. ...--++|.+++++..+ +.|+ ....+.+..++.+.|+.+++..++++. ...
T Consensus 393 ~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 393 WTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 54442 222333444332 2332 22235789999988754 7787 667788899999999999999999987 567
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
||....+.|...++..+.+.+|...|..++.++|++..+.-.
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 899999999999999999999999999999999998654433
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=3.5e-08 Score=110.71 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 407 FSETLSLFMEMQHHGIRPDEA-TLVSVISACT---------HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777776653 44432 3333322222 2244678888888887765 3356677778888889999
Q ss_pred HHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 477 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
+++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999987653 3457888899999999999999999999984 56543 333444556678999999999999
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CC
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL---QP 626 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p 626 (798)
+.+. ..|+ ...+..+...|...|++++|.+.++++ +..|+ ...++.+...+...| +.|...++++++. .|
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8763 2354 556778889999999999999999987 44454 445566666777777 4788878877753 44
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.++. .+..+|+-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 366788888999888877 6666544
No 75
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=9.7e-06 Score=87.29 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=140.9
Q ss_pred chhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhC-C-------CCCCcc
Q 003746 61 DTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNN-N-------VGVDNY 132 (798)
Q Consensus 61 ~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------~~~~~~ 132 (798)
|..+-..+++|-.|. ..|+.+.|.+-...+. +-..|..|.+.+.+..+.+-|.-.+..|... | .+-+..
T Consensus 725 d~~TRkaml~FSfyv-tiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV-TIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred CHHHHHhhhceeEEE-EeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 677888888887899 9999999988777664 4567999999999999998888877777532 1 111213
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc-chHHHHHHHHHhCC
Q 003746 133 TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDL-VSWNSILAGYVNAD 211 (798)
Q Consensus 133 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g 211 (798)
+=..+.-.....|-+++|+.++.+-.+.+ .|-..|-..|.+++|.++-+.-.+-.. .||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333333456788888988888876643 455678888999999888764322111 25555566666678
Q ss_pred CHHHHHHHHhhCCCC-----------------------CchHHHHHHHHHhhcCCHHHHHHHHhcCCC------------
Q 003746 212 NVEEAKFIYNKMPER-----------------------NIIASNSMIVLFGRKGNVAEACRLFKEMPK------------ 256 (798)
Q Consensus 212 ~~~~A~~~~~~m~~~-----------------------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------ 256 (798)
+.+.|++.|++...+ |...|.--....-..|+++.|..++.....
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG 952 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence 888888888775432 333344334444456777777776665431
Q ss_pred ------------CCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 257 ------------KDLVSWSALISCYEQNEMYEEALVLFMNMI 286 (798)
Q Consensus 257 ------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 286 (798)
.|......+.+-|-..|++.+|...|.+.+
T Consensus 953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244445556666666666666666666554
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.5e-06 Score=89.95 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=111.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHH
Q 003746 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPV---LDLVSWNSILAGYVNADNVEEAK 217 (798)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 217 (798)
|-..+++..+.+..+.+++ +++....+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3456677778888887777 4455556655555566777899999888876554 45578998888888888999999
Q ss_pred HHHhhCCC---CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 003746 218 FIYNKMPE---RNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRV- 290 (798)
Q Consensus 218 ~~~~~m~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 290 (798)
+.|+.... .|...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..++++..+...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988764 4566666666666666776665555444332 3567899999999999999999999988876542
Q ss_pred CCCchhH
Q 003746 291 MVDEVVV 297 (798)
Q Consensus 291 ~p~~~t~ 297 (798)
.|+...+
T Consensus 176 ~~s~~~~ 182 (700)
T KOG1156|consen 176 SPSKEDY 182 (700)
T ss_pred CCCHHHH
Confidence 3444333
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=4.6e-06 Score=87.08 Aligned_cols=446 Identities=12% Similarity=0.028 Sum_probs=223.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003746 103 MRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT--LINMYA--V 178 (798)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 178 (798)
+.-+..+|++++|.....++...+ +-|...+.+-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 345567888889998888888655 55566677777777888888888744332 22 1111122 234444 6
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHH-hhcCCHHHHHHHHhcCCCC
Q 003746 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLF-GRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~~ 257 (798)
.+..|+|+..++.....|..+...-...+.+.|++++|+++|+.+.+.+...+...+..- ...+..-.+. +.+..+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 789999999998555555546666667788999999999999999776555444333221 1111111221 34444443
Q ss_pred CcccHHHH---HHHHHhcCChhHHHHHHHHHHHCC-------CCC------CchhH-HHHHHHHhccCchHHHHHHHHHH
Q 003746 258 DLVSWSAL---ISCYEQNEMYEEALVLFMNMIDHR-------VMV------DEVVV-VSVLSACANLTVVKAGTSVHALA 320 (798)
Q Consensus 258 ~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~p------~~~t~-~~ll~a~~~~~~~~~a~~i~~~~ 320 (798)
...+|..+ .-.+...|++.+|+++++...+.+ -.- +..+. .-+.-.+-..|+-+++.+++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344433 346678899999999998873211 100 00011 11122334568888888888888
Q ss_pred HHhCCccc---hhHHHHHHHHHHhCCCHH-HHHHHHHhcCCCChhhHHHHHH-------------HHHhcCCHHHHHHHH
Q 003746 321 VKIGIECY---INLQNALIHMYSSCGEIT-TAEKLFDAGHNLDLISWNSMIS-------------GYLKCGSVEKARALF 383 (798)
Q Consensus 321 ~~~g~~~~---~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~A~~~~ 383 (798)
++...... ....|.|+.+-....-++ .++..++........-|-..+. ...-.+..+.++++-
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 87764322 223344443322222122 2333333322111111111110 011233445555555
Q ss_pred HhcCCCC-HHHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccchhHHHHHHH--------
Q 003746 384 DAMIEKD-VVSWSTMISGY--AQHDQFSETLSLFMEMQHHGIRPD--EATLVSVISACTHLVALDQGKWIHA-------- 450 (798)
Q Consensus 384 ~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~-------- 450 (798)
...+... ...+.+++... ++...+.+|.+++...-+. .|+ .+.....+......|+++.|.+++.
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 5554432 22233333221 1222355555555554433 222 2233333444555666666666666
Q ss_pred HHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HH
Q 003746 451 YIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-IT 529 (798)
Q Consensus 451 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 529 (798)
.+.+.+..| .+..+++.+|.+.++.+.|..++.+.. ..|..-... .+.. .+
T Consensus 409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai------------------------~~~~~~~t~--s~~l~~~ 460 (652)
T KOG2376|consen 409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI------------------------KWWRKQQTG--SIALLSL 460 (652)
T ss_pred hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH------------------------HHHHHhccc--chHHHhH
Confidence 333333333 333445666666665555555544222 111111000 0000 11
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+.-+...-.+.|+.++|...++++.+. .++|..+...+|.+|++. +.+.|..+-..+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 112222223446666666666666542 234556666666666554 355566555555
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=3.7e-08 Score=110.48 Aligned_cols=210 Identities=11% Similarity=-0.001 Sum_probs=163.1
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH---------hcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYM---------KLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL 507 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 507 (798)
+++++|...++..++.... +...+..+..+|. ..+++++|...+++..+. +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3557888899988876432 3445555555443 234588999999987754 45688888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHH
Q 003746 508 ADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEEL 585 (798)
Q Consensus 508 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 585 (798)
+++|+..|++..+. .|+. ..+..+..++...|++++|...++++++ +.|+ ...+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999984 5664 4677778889999999999999999976 5565 23334455567778999999999
Q ss_pred HHhC--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 586 IESM--PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 586 ~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+++. ...| +...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 2235 45567778888889999999999999998899988888888888888888 588887777664
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=1.6e-07 Score=100.22 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEH-----RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--------PMSPD 594 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~ 594 (798)
+++.+...|.+.|++++|.++|++++... +..+. ..+++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 56666677777777777777777665432 11222 455667777777788777777777664 23455
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 595 -VATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 595 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+|..|...|...|+++.|+++.++++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45789999999999999999999988873
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=8.8e-08 Score=95.12 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...+..+...|...|++++|.+.+++..... +.+...+..+...+...|++++|...+....+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 4566777777777888888888877776542 11233333344444444444444444444443321
Q ss_pred HHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 003746 471 YMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 549 (798)
.+...+..+...+...|++++|++.|++.......|. ...+..+...+...|++++|...
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1223455555556666666666666666655322222 23445555666677777777777
Q ss_pred HHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 550 FNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 550 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+++..+. .| +...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+..|
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7776542 23 3456666777777777777777777665 22 23455555666677777777777777776665543
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=5.9e-06 Score=80.57 Aligned_cols=445 Identities=14% Similarity=0.091 Sum_probs=239.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCHH
Q 003746 138 AQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP---VLDLVSWNSILAGYVNADNVE 214 (798)
Q Consensus 138 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~ 214 (798)
+.-+...+++..|..+++.....+-+....+-.-+...|...|++++|..++..+. .++...|-.+..++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 33445566777788877776654433223344445667778888888888887544 344556766777777777888
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 215 EAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
+|..+-....+. +.--..|...--|.|+-++-..+-+.+... ..---+|.+.....-.+.+|+++|.+....+ |+-
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEY 184 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhh
Confidence 887776655432 222223344445556655555444444321 1222334444455557788888888877643 444
Q ss_pred hhHHHHHHHH-hccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhC--CCHHHHH--HHHHhcCCCChhhHHHHHHH
Q 003746 295 VVVVSVLSAC-ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSC--GEITTAE--KLFDAGHNLDLISWNSMISG 369 (798)
Q Consensus 295 ~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~--~~~~~~~~~~~~~~~~li~~ 369 (798)
...+.-+..| .+..-.+.+..+++.-++. ++.++...|.......+. |+..+++ ++-+.+.+. -..+.-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~ 258 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEY 258 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHH
Confidence 4455444444 4556666666666555443 233333333333322221 2221111 111111100 111122
Q ss_pred HHhcC-----CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 370 YLKCG-----SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 370 ~~~~g-----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
+++.+ .-+.|.+++-.+...=+..--.++--|.++++..+|..+.+++.. ..|-......+..+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--------- 327 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--------- 327 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH---------
Confidence 22222 224444444333322223333455556677777777776665421 12222222222211
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC----C-cchHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK----G-VSSWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
++..-......+.-|...|+-.-+. | +.--.+|.+.+.-..++++.+-.+....
T Consensus 328 ---------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 328 ---------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred ---------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122344455555443322 2 2345556666666667777777777666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc-CCcchHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHH
Q 003746 520 KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-PNSKHYG-CMVDLLGRAGMLKEAEELIESMPMSPDVAT 597 (798)
Q Consensus 520 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 597 (798)
.- +.-|.+.-..+..+.+..|.+.+|.++|-.+. |.+ .|..+|. .|...|.+.|..+-|.+++-++.-+.+..+
T Consensus 387 sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs 462 (557)
T KOG3785|consen 387 SY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS 462 (557)
T ss_pred HH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH
Confidence 54 33333444456778888888888888887762 222 2344444 456788889999999998888854444444
Q ss_pred H-HHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 598 W-GALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 598 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
. ..+.+-|.+.+.+--|-++|+.+..++|..
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 3 445567888888888889998888888864
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=3.6e-06 Score=90.62 Aligned_cols=494 Identities=14% Similarity=0.065 Sum_probs=268.8
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHh
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASA---LRLSVFEGKLIHDHVLKAGFDSD-----VYVNNTLINMYAV 178 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~---~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~ 178 (798)
...+.+++++.-+......+...+..++..+..++. ..++.++. ++-..+..-+.|. ..++-.++--+.+
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 345566677777777776776777777666655432 33444444 2222222222222 2222222222222
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCC
Q 003746 179 CGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMP 255 (798)
Q Consensus 179 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 255 (798)
.+.+. .|...|..+.-++.+.|+++.+.+.|++.... ....|+.+...|..+|.-..|..+.++-.
T Consensus 316 ~~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 316 LKKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred Hhhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 22221 23334444555555666666666666655442 33456666666666666666666665543
Q ss_pred C----CCcccHHHHHH-HHH-hcCChhHHHHHHHHHHHC--C----CCCCchhHHHHHHHHhc----cC-------chHH
Q 003746 256 K----KDLVSWSALIS-CYE-QNEMYEEALVLFMNMIDH--R----VMVDEVVVVSVLSACAN----LT-------VVKA 312 (798)
Q Consensus 256 ~----~~~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~a~~~----~~-------~~~~ 312 (798)
. |+..+--.|+. .|. +-|.++++++.-.+.... + +.|- .+..+--+|.. .. ....
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 2 22233333332 222 335666666666555441 1 2222 22222222211 11 1223
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 313 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
+.+.++..++.+. .|+.+.--+.--|+..++++.|.+..++ ....+...|..|.-.+.-.+++.+|+.+.+...+
T Consensus 463 slqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4445555555442 2223333334456677888888777765 3556777888888888888889999888876643
Q ss_pred CCHHHHHH---HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHH--HcCCCCcHHH
Q 003746 389 KDVVSWST---MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIR--KNGLKINSIL 463 (798)
Q Consensus 389 ~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 463 (798)
.-..-++. -+..-..-++.++|+.....+... --+...+...+. .| ...+....+. .......+.+
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g---~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EG---KLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hh---hhhhhhcccccCcccccccchh
Confidence 32111111 112222357777777777666431 000000000000 00 0011111000 0011112222
Q ss_pred HhHHHhhHHhcC---CHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003746 464 GTTLIDMYMKLG---CVDNALEVFHGTEEKG------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGV 533 (798)
Q Consensus 464 ~~~li~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 533 (798)
+..+.......+ ..+.....+...+.++ ...|......+...++.++|...+.+... +.|-. ..|...
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 222222211111 1111112222222233 23577777888889999999877777766 33433 355555
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEE--LIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
...+...|..++|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 5677788999999999988754 7886 7888999999999998777776 77766 6666 688999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcc
Q 003746 609 GDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
|+.+.|.+.|.-++++++.+|.
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999888764
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.1e-08 Score=96.20 Aligned_cols=231 Identities=11% Similarity=0.095 Sum_probs=163.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 395 STMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 395 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
+.|..+|.+.|.+.+|...|+.-... .|-+.||..+-.+|.+....+.|..++.+-++. ++.++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766654 455556666666677777777776666665554 233444444555666677
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 475 GCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
++.++|.++++...+. ++.+..++..+|.-.+++|-|+..|+++.+.|+. +..-|+.+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7778888887766543 4556666677777788888888888888887754 45567777777777777777777666
Q ss_pred HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
+.... --.| ..-..+|..|.......||+..|.+.|+-++.-+|++...
T Consensus 383 RAlst-at~~------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQP------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCc------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66431 0001 1124567778777788899999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..|+-+-.+.|+.++|+.++...++...
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999888899999999999998876543
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=1.9e-06 Score=94.73 Aligned_cols=582 Identities=11% Similarity=-0.000 Sum_probs=305.7
Q ss_pred HHHHHHHHHHhCCCCch-hhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHH
Q 003746 46 FTQILSQMILTGLIADT-FAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKL 121 (798)
Q Consensus 46 ~~~~~~~~~~~g~~~~~-~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 121 (798)
...+|..+....+.++. ..+..|-. .|. ...+...|.+.|+...+ -+..+|-.....|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~--iYr-d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQ--IYR-DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHH--HHH-HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44556555555544432 34666666 666 66678888888886544 5677899999999999999999888332
Q ss_pred HHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchH
Q 003746 122 MLNNN-VGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSW 200 (798)
Q Consensus 122 m~~~g-~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~ 200 (798)
.-+.. ...-...|..+--.+...++...+..-++...+.. +.|...|..|..+|..+|++..|.++|++....++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22211 00111122333333556678888888888888776 67888999999999999999999999988776555544
Q ss_pred HHH---HHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHH-------HhhcCCHHHHHHHHhcCCC-----------
Q 003746 201 NSI---LAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVL-------FGRKGNVAEACRLFKEMPK----------- 256 (798)
Q Consensus 201 ~~l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~-------y~~~g~~~~A~~~f~~~~~----------- 256 (798)
-.. ....+..|.+.+|+..+...... .....+.|... +.-.|-...|...|+.-.+
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 332 23356688999999888776531 11112222222 2223333334444433211
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch---H---HHHHHHHHHHHhCCccchh
Q 003746 257 KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV---K---AGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~~ 330 (798)
.|...|-.+- .|..+|-+.. .. .|+......+..-.-..+.. + .|-+.+ .....+..+..
T Consensus 711 ~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 711 SDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMY 776 (1238)
T ss_pred hhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccc
Confidence 1222222222 2333443332 11 22222222222212222222 1 011111 11111222233
Q ss_pred HHHHHHHHHHh----CC----CHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhc---CCCCHHHHHH
Q 003746 331 LQNALIHMYSS----CG----EITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAM---IEKDVVSWST 396 (798)
Q Consensus 331 ~~~~li~~y~~----~g----~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ 396 (798)
.+-.|+..|.+ +| +...|...+.+. ...+...||.|.-. ...|++.-|...|-.- .+....+|..
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec
Confidence 34334333332 22 234566777663 33456677776554 5557777777766443 2446778888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccchhHHHHHHHHH--H--HcCCCCcHHHHhHHHhhH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVALDQGKWIHAYI--R--KNGLKINSILGTTLIDMY 471 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~li~~~ 471 (798)
+...+.++.+++.|...|...+.- .| |...+..........|+.-+...++..- . ..|--++..-+-+-....
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 888888888999888888877653 34 3344433333334456555555555542 1 123233333333333344
Q ss_pred HhcCCHHHHHHHHhhcCC-------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHH---
Q 003746 472 MKLGCVDNALEVFHGTEE-------------KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS-GVTPNEITFVGVL--- 534 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll--- 534 (798)
...|+.++-+..-+.+.. .+...|.+.....-+.+.+++|.++..+.... ..+-|..+|+.+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 556665555444443332 12345666666666666666666666554320 0122333444321
Q ss_pred -HHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH--HhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHH
Q 003746 535 -GACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL--GRAGMLKEAEELIESM----PMSPDV-ATWGALLGACK 606 (798)
Q Consensus 535 -~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~ 606 (798)
..+...|.++.|..- .+..|-..---.+.-.+ .-.|+++++.+.|+++ ..+.|. +....++.+..
T Consensus 1014 gRL~lslgefe~A~~a-------~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKA-------SWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhcchhhHhhh-------hcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 222333444433322 22222111111111111 2356777777777776 222332 33444555556
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
..+..+.|...+-+...+.|.+......|.-++.-..+-.....+.+++
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred hcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 6677777777777777777666666666655554443333333333333
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=0.00023 Score=78.76 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 003746 343 GEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGI 422 (798)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 422 (798)
+-+++|..+|++- ..+....+.||. .-+.+|.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 3345555555431 222333333333 34555666655555443 457999999999999999999887543
Q ss_pred CCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC-------------
Q 003746 423 RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE------------- 489 (798)
Q Consensus 423 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 489 (798)
-|+..|.-++.++.+.|.+++-..++..+.+..-+|.+. +.|+-+|++.+++.+-.+++..-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 367789999999999999999999998888876666544 5788899999998887766532110
Q ss_pred ----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Q 003746 490 ----------KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL 559 (798)
Q Consensus 490 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 559 (798)
.++.-|..|...+...|++..|...-++. .+..||-.+-.+|...+.+.-|. | -|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL 1273 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGL 1273 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCc
Confidence 02334555555566666666555544332 23446666666666554443332 2 122
Q ss_pred --cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 560 --EPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 560 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.....-..-++..|-..|.++|-..+++.. +++. ....++.|.-.|.+. ++++-.+.++-.... -+ .--+
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-vN----ipKv 1347 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-VN----IPKV 1347 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-cc----hHHH
Confidence 223344556777777888888877777765 4443 233455555555443 244333333332211 00 1123
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 003746 636 SNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m 655 (798)
..++.++-.|.|..-++.+-
T Consensus 1348 iRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1348 IRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34555666676666555543
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.7e-08 Score=94.51 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=162.7
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV-GVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a 536 (798)
|-.--+.+..+|.+.|-+.+|.+.|+.-.+ +-+.+|-.|-.+|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 333445678889999999999999887653 4577899999999999999999999999887 578888865 45578
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChh
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM---PMSPDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 612 (798)
+...++.++|.++++...+ ..| +++...|+...|.-.|+.+-|+.++.++ +. -++..|..+.-+|.-.+++|
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 8889999999999999976 344 6888899999999999999999999876 53 46778899999999999999
Q ss_pred HHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 613 MGERVGRKLVEL--QPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 613 ~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
.++..|++++.. +|+ ...+|+.|+.+....|++.-|.+.|+.....+.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999999999864 343 356789999999999999999999998876543
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=0.00018 Score=76.42 Aligned_cols=549 Identities=11% Similarity=0.080 Sum_probs=308.0
Q ss_pred CCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 003746 77 PFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLI 153 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~ 153 (798)
..|+-++|......-.+ ++.+.|..+.-.+-...++++|+..|+.....+ +-|...+.-+.-.=++.++++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 57889999887765433 678899998888888899999999999998654 33333444333233456777776666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC-----CCCcchHHHH------HHHHHhCCCHHHHHHHHhh
Q 003746 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP-----VLDLVSWNSI------LAGYVNADNVEEAKFIYNK 222 (798)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~d~~~~~~l------i~~~~~~g~~~~A~~~~~~ 222 (798)
-....+.. +.....|..+..++.-.|+...|..+.++.. .++...+.-. .....+.|.+++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 66666654 4556678888888888999999988876533 2333333222 2345678888999988776
Q ss_pred CCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCC--CcccHHHH-HHHHHhcCChhHHH-HHHHHHHHC---CCCC
Q 003746 223 MPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKK--DLVSWSAL-ISCYEQNEMYEEAL-VLFMNMIDH---RVMV 292 (798)
Q Consensus 223 m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~---g~~p 292 (798)
-... ....-..-.+.+.+.+++++|..++..+..+ |.+-|+-. ..++.+--+.-+++ .+|....+. .-.|
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 6543 2334456678899999999999999988764 44444444 34443333334444 555555432 1111
Q ss_pred CchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHH----------------Hh--
Q 003746 293 DEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLF----------------DA-- 354 (798)
Q Consensus 293 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----------------~~-- 354 (798)
-.... +......-.+.....+....+.|+++ ++..+...|-.-...+--+++. +.
T Consensus 291 ~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 291 RRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred hhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 11111 11112222333444555555666543 3344444443222111111111 11
Q ss_pred cCCCChhhHHH--HHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 003746 355 GHNLDLISWNS--MISGYLKCGSVEKARALFDAMIEKDVV---SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429 (798)
Q Consensus 355 ~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 429 (798)
..+|....|+. ++..+-+.|+++.|...++......+. -|-.-...+...|+.++|...+++.++-+ .||...-
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 12455565654 566788899999999999988766443 34444567888899999999998887754 4554443
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHH--------HhH--HHhhHHhcCCHHHHHHHHhhcCCC---------
Q 003746 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSIL--------GTT--LIDMYMKLGCVDNALEVFHGTEEK--------- 490 (798)
Q Consensus 430 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~--li~~~~~~g~~~~A~~~~~~~~~~--------- 490 (798)
.--..-..+.+..++|..+.....+.|. +..- |-. =..+|.+.|++..|++-|..+...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqf 520 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQF 520 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Confidence 3444445567888888888888887765 1111 111 134567777777777776655421
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----cCCcchH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL----EPNSKHY 566 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~ 566 (798)
|-.+| |.+.|-+..=+++++--...--.|.. +. -...|++++-.|...... .++....
T Consensus 521 Dfhty------c~rk~tlrsYv~ll~~~d~L~~~p~y--~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~m 582 (700)
T KOG1156|consen 521 DFHTY------CMRKGTLRSYVELLEWEDNLRSSPYY--LR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKM 582 (700)
T ss_pred hHHHH------HHhcCcHHHHHHHHHHHHhhccChHH--HH----------HHHHHHHHHHHHhcCcccccccchhhhhc
Confidence 11111 12222222111111110000001100 00 012233333333221100 0111111
Q ss_pred H-HHHHHHHhcC-CHHHHHHHHHh--------------CCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCc
Q 003746 567 G-CMVDLLGRAG-MLKEAEELIES--------------MPMSPDVATWGALLGACKK-HGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 567 ~-~l~~~~~~~g-~~~~A~~~~~~--------------~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+ -......+.. +-..|.+.-+. .+..||... +...+.+ ..-.++|.+.+..+....++..
T Consensus 583 s~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~ 659 (700)
T KOG1156|consen 583 SDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKG 659 (700)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccch
Confidence 1 1112221111 11111111111 133455442 2223333 2345778888888888899999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..|.+-..+|.+.|++.-+.+..+.....
T Consensus 660 ~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 660 ETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999888776543
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=7.1e-07 Score=91.55 Aligned_cols=226 Identities=10% Similarity=-0.076 Sum_probs=142.4
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 405 DQFSETLSLFMEMQHHG-IRPD--EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
+..+.++.-+.++.... ..|+ ...+......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555554321 1221 1233344444555666666666666666553 235677788888888899999999
Q ss_pred HHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 482 EVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 482 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
..|++..+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 888887643 3567888888899999999999999998874 565542222223345567899999999776542
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCcch
Q 003746 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM----SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP-DHDGF 631 (798)
Q Consensus 559 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 631 (798)
..|+... ..++..+......+++.+.+.+. .. .| ...+|..+...+...|++++|+..|+++++.+| +....
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3344322 23443333222223333333322 11 12 345899999999999999999999999999997 44443
Q ss_pred HHHHH
Q 003746 632 HVLLS 636 (798)
Q Consensus 632 ~~~l~ 636 (798)
...+.
T Consensus 274 ~~~~~ 278 (296)
T PRK11189 274 RYALL 278 (296)
T ss_pred HHHHH
Confidence 33343
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=9.8e-06 Score=89.40 Aligned_cols=539 Identities=12% Similarity=0.034 Sum_probs=293.6
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHcc
Q 003746 112 PQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDE 191 (798)
Q Consensus 112 ~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 191 (798)
...|+..|-+..+..+ .=...|..|-..|....+...|++.|..+.+.+ +.|...+..+.+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5556666555554321 112346777777766667778888888888776 67778888899999999999988887433
Q ss_pred CCCCCc-----chHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHH
Q 003746 192 SPVLDL-----VSWNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWS 263 (798)
Q Consensus 192 ~~~~d~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 263 (798)
..+.+. ..|--..-.|.+.++...|+.-|+...+. |...|..|..+|.++|++..|.++|++...-++.+|-
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 332222 23444444577788888888888887765 4556778999999999999999999887654444332
Q ss_pred H---HHHHHHhcCChhHHHHHHHHHHHCC-----CCC-CchhHHHHHHHHhccCc-------hHHHHHHHHHHHHhCCcc
Q 003746 264 A---LISCYEQNEMYEEALVLFMNMIDHR-----VMV-DEVVVVSVLSACANLTV-------VKAGTSVHALAVKIGIEC 327 (798)
Q Consensus 264 ~---li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~~~-------~~~a~~i~~~~~~~g~~~ 327 (798)
. ....-+.+|.+.+|+..+......- .+. -..++......+...|- ++...+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 2233466788888888887765321 000 11122222222222221 222222222222222111
Q ss_pred chhHHH-------------------HHHHHHHh----CCCH---H---HHHHHHHh--cCCCChhhHHHHHHHHHh----
Q 003746 328 YINLQN-------------------ALIHMYSS----CGEI---T---TAEKLFDA--GHNLDLISWNSMISGYLK---- 372 (798)
Q Consensus 328 ~~~~~~-------------------~li~~y~~----~g~~---~---~A~~~~~~--~~~~~~~~~~~li~~~~~---- 372 (798)
+...+- .++..+.+ .+.. + -+.+.+-. ....++.+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 211111 11111111 1111 0 00000000 111224445444433332
Q ss_pred cC----CHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHH
Q 003746 373 CG----SVEKARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445 (798)
Q Consensus 373 ~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 445 (798)
+| +...|...+.... ..+...||.|.-. ..-|.+.-|...|-+-.... +-+..+|..+--.|....+++.|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 11 2234444444432 2355566665544 44455555555555444321 22444555555556666677777
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-----C---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTE-----E---KGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
.+.+....... +.+...|--..-.-...|+.-++..+|..-. + ++..-|-.-..-...+|+.++-+...++
T Consensus 870 ~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 77776665542 2233333333333345566666666665411 1 2334455555555667776665544443
Q ss_pred HHH---------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH----HHHHHHHhcCCHHHHHH
Q 003746 518 MKK---------SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG----CMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 518 m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~ 584 (798)
+-. .|.+.+...|........+.+...+|.+...+.+.-...+-+...|+ ....++...|.++.|..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 321 12333445677777777788888888777766543222334455555 34455667788888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHH
Q 003746 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV---LLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 585 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
-+...+...|..+-.+-+.. .-.++++++.+.|++++.+..++....+ .++......+.-+.|....-+..
T Consensus 1029 a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1029 ASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 77666555555554444444 4458899999999999987555443333 33444456677777776654443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.2e-07 Score=98.57 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=157.6
Q ss_pred cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
+.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+++..+- |....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555543 234555555655566666666666666665543 455666677777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003746 515 FSEMKKSGVTPNEITFVGV--------LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++.-+... |...-...- -........+....++|-.+....+..+|..++.+|.-+|--.|++++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87765532 111000000 01122233455566777777776676788999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 587 ESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 587 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+.+ .++| |...||-|...+....+.++|+.+|.+++++.|.-....+.|+-.|...|.++||.+.+-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 988 6677 6889999999999999999999999999999999999999999999999999999999876654
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=5.5e-06 Score=89.85 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
++..+...|.+.|++++|.++.++.++ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 445556667788888888888888875 4565 778888888888888888888888877 3333 555555566666
Q ss_pred HHcCChhHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 606 KKHGDHEMGERVGRKLVELQ--PDH-------DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+.|+.++|++.+.....-+ |.. ..+..-.+.+|.+.|++..|++.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888888887775433 221 11234567888888988888887766643
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=2.3e-06 Score=78.96 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=135.9
Q ss_pred HhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHH
Q 003746 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 512 (798)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+.|++..+ .+-...|.-..-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333444444444444444432 22445566677777888888888888876543 34556777777788888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 513 EMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 513 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
..|++......-|. ..||..+.-+..+.|+.+.|.++|++.++ +.|+ ......+.+...+.|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888887433333 24777777777888999999999988875 4564 667778888888899999999888877
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 590 -PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 590 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
...++..+.-..+..-...||.+.+.+.-.++....|.....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 334677777777777788888888888888888888876543
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.6e-05 Score=84.12 Aligned_cols=414 Identities=12% Similarity=0.122 Sum_probs=216.5
Q ss_pred CCchhHHHHHHH--HHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhh
Q 003746 163 DSDVYVNNTLIN--MYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGR 240 (798)
Q Consensus 163 ~~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~ 240 (798)
..|..+..++++ .|..-|+.|.|.+-...++ ....|..|.+.+++..+++-|.-.+..|.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~---------------- 784 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMK---------------- 784 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhh----------------
Confidence 356666666665 4667788888887776665 34568888888888888888877776663
Q ss_pred cCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHH
Q 003746 241 KGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALA 320 (798)
Q Consensus 241 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 320 (798)
+...|+.+=+....++ ..-.-..-...+.|..++|+.+|++-.+ |..+=..|...|.+++|.++-+.-
T Consensus 785 --~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 785 --NARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred --hhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc
Confidence 2233333322222222 1111111222455666677776666554 222222333445555554443321
Q ss_pred HHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003746 321 VKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISG 400 (798)
Q Consensus 321 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 400 (798)
-+..+ ..+|-....-+-..++++.|++.|++...+-...+..|. .+...-+...+.+.++ ..|.-...-
T Consensus 853 DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqY 921 (1416)
T KOG3617|consen 853 DRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQY 921 (1416)
T ss_pred cceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHH
Confidence 11111 123333344444556667777766654333322222221 1222223333444333 333334455
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
.-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++- .|......|..+|...|++.+|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHH
Confidence 5567888999988887654 445666677788888888776542 3566667788999999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCC---------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 481 LEVFHGTEEKGVSSWNALIIGFAMNGL---------------ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 481 ~~~~~~~~~~~~~~~~~li~~~~~~g~---------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
..+|.+.. ++..-|..|..++. .-.|..+|++. |.. +......|-++|.+.+
T Consensus 987 v~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 987 VKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHH
Confidence 98887654 22223333322222 22233333321 111 1122334555666655
Q ss_pred HHHH---------HHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003746 546 GHRH---------FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 546 a~~~---------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
|+++ ++-+.++..-..|+...+--.+.+....++++|..++-... -+..-+.. +...+...-++
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~Alql-C~~~nv~vtee 1126 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQL-CKNRNVRVTEE 1126 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHH-HhcCCCchhHH
Confidence 5543 23333322222345666666666777777777776655431 11222222 23334444444
Q ss_pred HHHHHHh-c--CCCC---cchHHHHHHHHHhcCChhHHHHHH
Q 003746 617 VGRKLVE-L--QPDH---DGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 617 ~~~~~~~-~--~p~~---~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+.+.|-- . .|+. ......++..|.++|.+..|.+-|
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4444431 1 1211 124556788888888877776554
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.8e-06 Score=85.60 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=124.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc----------chHHHHH
Q 003746 430 VSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV----------SSWNALI 499 (798)
Q Consensus 430 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 499 (798)
..+.++..+..+++.+.+-+...+... .+..-++.....|...|++......-....+.+- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666666666554 4555556666667777766666655544333321 1222344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-chHHHHHHHHHhcCC
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGM 578 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 578 (798)
.+|.+.++++.|+..|.+.......||.. .+....+++....+... -+.|.. .-...-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 46666777778888887766554444432 12223333333333321 133331 111122455666777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 579 LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+-++....+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666 2334 566667777777777777777777777777777777777766667777777777777776655
Q ss_pred hC
Q 003746 657 RR 658 (798)
Q Consensus 657 ~~ 658 (798)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 53
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=5.2e-05 Score=73.94 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHhcCCCCHHHHHHHH---HHHHhC
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS---GYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQH 404 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~ 404 (798)
-.--|...+...|++.+|+..|...++.|+..|.++.. .|...|+...|..-|++..+.-+..+.+-| ..+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 33445556666777788888887777777777766653 566667666666666655433222222222 356677
Q ss_pred CChHHHHHHHHHHHHcCCCCC----H----------HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 405 DQFSETLSLFMEMQHHGIRPD----E----------ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd----~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
|.+++|..=|+...+....-+ . ......+..+...|+...++.....+++.. +.|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 888888888887766532110 0 112222334455677777777777777753 4577778788888
Q ss_pred HHhcCCHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH----HH------H---
Q 003746 471 YMKLGCVDNALEVFHGT---EEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV----GV------L--- 534 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~l------l--- 534 (798)
|...|++..|+.-++.. ...+....--+-..+...|+.+.++...++-++ +.||..... .| |
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 88888888887665543 345566777777778888888888888888877 577764211 11 1
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKK 607 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 607 (798)
......+.+.++.+-.++.++ .+|. ...+..+-..|...|++.+|++.-.+. .+.|| +.++---..+|..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 112234556666666665554 2333 223334455566667777777766655 44554 5566666667777
Q ss_pred cCChhHHHHHHHHHHhcCCCCcch
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
...++.|+.-|+++.+.+|++..+
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHH
Confidence 777777777777777777776543
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=9.6e-05 Score=80.38 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
|.-+...|-..|++++|++++++.... .|+ +..|..-...+-+.|++.+|....+.+..... .|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 345566778888888888888888775 455 44566667778888888888888888887653 47777777888888
Q ss_pred hcCCHHHHHHHHhhcCCCCc----------chH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC-------------CC
Q 003746 473 KLGCVDNALEVFHGTEEKGV----------SSW--NALIIGFAMNGLADKSLEMFSEMKKS--GV-------------TP 525 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~p 525 (798)
++|++++|.+++......+. ..| .....+|.+.|++..|++.|....+. .+ +.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 89999999888887765542 134 33456788888888888777665431 01 11
Q ss_pred CHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHhCCCcCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 003746 526 NEITFVGVLGACRHMG-------LVDEGHRHFNSMIQEHRLEPNSKH-----------YGCMVDLL---GRAGMLKEAEE 584 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~ 584 (798)
+..+|..++...-+.. -...|.+++-.+-........... -..+-.-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233444443332211 122344444444221000000000 00000000 11111112221
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 585 LIE-----------SM----P--MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 585 ~~~-----------~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.-. +. + ..+|+.- ..|+ ....=+++|.++++-+.+..|++..++.+--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 00 1 1122211 1121 122346889999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 003746 648 VLEVRGM 654 (798)
Q Consensus 648 a~~~~~~ 654 (798)
|++.+++
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8877653
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=3.3e-05 Score=75.26 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=212.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccc
Q 003746 365 SMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI---SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVS-VISACTHLV 440 (798)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~ 440 (798)
-+.+.+.-.|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+..+ ++||-..-.. -...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4556677899999999999999998888877764 578999999999998888876 5788543222 123467899
Q ss_pred chhHHHHHHHHHHHcCCCCc--HHHH------------hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKIN--SILG------------TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFA 503 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 503 (798)
.+++|..=|..+++.....+ ..++ ...+..+.-.|+...|++....+.+ .|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988753211 1111 1223345567889999988887764 47778888889999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc----hHHHH---HH-----
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK----HYGCM---VD----- 571 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---~~----- 571 (798)
..|.+..|+.=++...+.. .-|..++..+-..+...|+.+.++...++.++ +.||-. +|..| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777642 33445676777778888999888887777654 667632 22222 11
Q ss_pred -HHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 572 -LLGRAGMLKEAEELIESM-PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 572 -~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
...+.+++.++.+-.++. ...|. ...+..+-.+++..|++.+|++...++++++|++..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 123456666666665554 44454 22344555666788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 003746 645 WDDVLEVRGMMVRRG 659 (798)
Q Consensus 645 ~~~a~~~~~~m~~~~ 659 (798)
+++|+.-|++..+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887644
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.9e-05 Score=78.96 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=143.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchh
Q 003746 366 MISGYLKCGSVEKARALFDAMIEK--DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443 (798)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 443 (798)
+.++..+..+++.|.+-++...+. ++.-++....+|...|.+.+....-....+.|-. ...-|+.+-
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa---------- 298 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA---------- 298 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH----------
Confidence 344444555666666666555433 2233455556677777666666555544333211 000011100
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV 523 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 523 (798)
.....+...|.+.++++.|...|.+....-.. -....+....++++...+...- +
T Consensus 299 ------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~ 353 (539)
T KOG0548|consen 299 ------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--I 353 (539)
T ss_pred ------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--h
Confidence 01111444677778888888887764422100 1112223344555555544443 3
Q ss_pred CCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 003746 524 TPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWG 599 (798)
Q Consensus 524 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 599 (798)
.|... -...-...+.+.|++..|...+.++++. .| |...|..-.-+|.+.|.+.+|++-.+.. ...|+ ...|.
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 44432 1222255677889999999999998874 35 5888999999999999999888876665 44554 44555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
-=..++....+++.|.+.|++.++.+|++..+...+...+...
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 5566666778999999999999999999988777777666543
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=7.3e-07 Score=90.02 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcch---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKH---YGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLG 603 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 603 (798)
.....+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-...+.+|.-+|+++ ...+++.+.+.+..
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 344444555555666666666655532 2233111 112222222233566777777766 33456677777777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW-DDVLEVRGMMVR 657 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 657 (798)
+....|++++|+++++++++.+|+++.+...++-+....|+. +.+.+++..++.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777778888888888888888888777777777777777777 556667766654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=5.3e-05 Score=80.73 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=147.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh----cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDE-ATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
..+...|++++|.+.+++.... .|+. ..+.. ...+. ..+..+.+.+.+... ....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHH
Confidence 3455667777777777777664 3332 22221 11111 233344444443331 11112223344455667778
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCcHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPNE--ITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~ 547 (798)
.|++++|.+.+++..+. +...+..+...|...|++++|+.++++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888876643 455677778888888888888888888776422 1222 23445667778888888888
Q ss_pred HHHHHHHHhCCCcCCcchH-H--HHHHHHHhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003746 548 RHFNSMIQEHRLEPNSKHY-G--CMVDLLGRAGMLKEAEEL---IESM----PMSPDVATWGALLGACKKHGDHEMGERV 617 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 617 (798)
.++++........+..... + .+...+...|..+.+.+. .... +.............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888874321111111111 1 223333344432222222 1111 1111122223456667788899999999
Q ss_pred HHHHHhcC-C--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 618 GRKLVELQ-P--------DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 618 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++.+.... . .........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88876421 1 134455677788899999999999998877543
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=4.2e-05 Score=73.09 Aligned_cols=309 Identities=11% Similarity=-0.006 Sum_probs=145.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHH
Q 003746 99 FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNN-TLINMYA 177 (798)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~ 177 (798)
+++.+.-+.+..++.+|++++..-.+.. +.+....+.+..++....++..|...++++-..- |...-|. --...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4555555666666667766666555442 2244445555555556666666666666654432 2221111 1122333
Q ss_pred hcCChHHHHHHHccCCCC-CcchHHHHHHH--HHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 178 VCGDLSAARKLFDESPVL-DLVSWNSILAG--YVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~~~-d~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
+.+.+.+|++|...|... +...-..-+.+ ....+++..+..+.++... .+..+.+.......+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke------------ 157 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE------------ 157 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc------------
Confidence 555666666666555532 11111111111 1234444444444444442 3333344444444444
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHH-
Q 003746 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ- 332 (798)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~- 332 (798)
|+++.|++-|+...+-|--.....|+..+..+ +.++...|.+...+++++|+...+...
T Consensus 158 -------------------gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 158 -------------------GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred -------------------ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 44444444444444332222223333333222 234444444444444444432211100
Q ss_pred ---HHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhC
Q 003746 333 ---NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-----DVVSWSTMISGYAQH 404 (798)
Q Consensus 333 ---~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~ 404 (798)
...+++-.-.+-...++. .-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cceeccCchhcccchHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 000000000000000000 00112233333455889999999999999866 777765544322 23
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
+++.+..+-+.-+..... -...||..++-.||+..-++.|-.++.+
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 555555555555554432 3457888888889988888888777654
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=3.3e-06 Score=83.98 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=109.0
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGV------SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----T 529 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 529 (798)
....+..+...|.+.|++++|...|+++...+. .+|..+...|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777766543211 24556666667777777777777776653 23221 2
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHHhCCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003746 530 FVGVLGACRHM--------GLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600 (798)
Q Consensus 530 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 600 (798)
+..+..++... |+.++|.+.|+++++. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566666666666543 2332 111111110 0000000 001124
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|.++++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678889999999999999999877654 67889999999999999999999888654
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9.4e-05 Score=70.75 Aligned_cols=277 Identities=10% Similarity=0.044 Sum_probs=149.1
Q ss_pred hcCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccchhHHHHHH
Q 003746 372 KCGSVEKARALFDAMIE-KDVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
..+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+. |..| ...|+..+. ..+.++...|....
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHH
Confidence 45566666666666653 34444444455555666666666666665543 3333 344444433 23445666666666
Q ss_pred HHHHHcCCCC-------------c--------HHHHhHHH-------hhHHhcCCHHHHHHHHhhcCCC-----CcchHH
Q 003746 450 AYIRKNGLKI-------------N--------SILGTTLI-------DMYMKLGCVDNALEVFHGTEEK-----GVSSWN 496 (798)
Q Consensus 450 ~~~~~~~~~~-------------~--------~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 496 (798)
.+++++|+.. | ..+-++++ ..+.+.|+.+.|.+.+..|+.+ |++|..
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 6666554431 1 11122233 3457889999999999999965 567765
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-cCCcchHHHHHHHHH-
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL-EPNSKHYGCMVDLLG- 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~- 574 (798)
.+.-.= ..+++.+..+-+.-+...+.- ...||..++-.|++..-++-|-.++.+-.. ..+ -.+...|+ |++.+.
T Consensus 282 N~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 282 NQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHh
Confidence 553222 244555555555555554332 246999999999999888888887754211 000 01223333 333333
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCh----hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 575 RAGMLKEAEELIESMPMSPDVATWGALLGAC-KKHGDH----EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
..-..++|.+-++.+...-....-..-+..- .++.+- ..+++-+++.+++. ..+...-+++|.+..++..+.
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vE 434 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVE 434 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHH
Confidence 3445666666555441000000000111111 122222 23334445555432 124556778899999999999
Q ss_pred HHHHHHHh
Q 003746 650 EVRGMMVR 657 (798)
Q Consensus 650 ~~~~~m~~ 657 (798)
++|..-.+
T Consensus 435 k~Fr~Sve 442 (459)
T KOG4340|consen 435 KIFRKSVE 442 (459)
T ss_pred HHHHHHHh
Confidence 99987654
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=2.1e-06 Score=86.76 Aligned_cols=247 Identities=14% Similarity=0.118 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHHh--cCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHH
Q 003746 372 KCGSVEKARALFDA--MIEK-DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWI 448 (798)
Q Consensus 372 ~~g~~~~A~~~~~~--m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 448 (798)
-.|++..+..-.+. ..+. +.....-+..+|...|+++.++.-. ... -.|....+..+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 44555555543331 1111 2233444566777777766554322 222 255555544444444332333333332
Q ss_pred HHHHHHcCCC-CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003746 449 HAYIRKNGLK-INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE 527 (798)
Q Consensus 449 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 527 (798)
+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 2222222222 23344444446677889999999888765 45666677888999999999999999999873 444
Q ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 528 ITFVGVLGACRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 528 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
.+...+..++.. .+.+.+|..+|+++..+ ..+++.+.+.+..++...|++++|.+++++. ...| |..++-.+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 445455554432 33689999999998664 4577888999999999999999999999886 4344 56677788
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHhcCCCCc
Q 003746 602 LGACKKHGDH-EMGERVGRKLVELQPDHD 629 (798)
Q Consensus 602 ~~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 629 (798)
+......|+. +.+.+...++....|+++
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8888888887 677888899888999875
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.0014 Score=79.44 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=126.8
Q ss_pred ccCchHHHHHHHHHHHHhCCccc----hhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCC--hhhHHHHHHHHHh
Q 003746 306 NLTVVKAGTSVHALAVKIGIECY----INLQNALIHMYSSCGEITTAEKLFDAGH-------NLD--LISWNSMISGYLK 372 (798)
Q Consensus 306 ~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~--~~~~~~li~~~~~ 372 (798)
..|+++.+...+......-...+ ....+.+...+...|++++|...+++.. .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 45555555555555544211111 1233445555666777777766665421 111 1233444555667
Q ss_pred cCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHh
Q 003746 373 CGSVEKARALFDAMIE-------K----DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD--EATLVSVISACT 437 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~ 437 (798)
.|+++.|...+++... . ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 7777777776655421 0 11233444555666788888888877764421 1121 222333344555
Q ss_pred cccchhHHHHHHHHHHHcCC--CCcHH----HHhHHHhhHHhcCCHHHHHHHHhhcCCCCcc-------hHHHHHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGL--KINSI----LGTTLIDMYMKLGCVDNALEVFHGTEEKGVS-------SWNALIIGFAM 504 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~--~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~ 504 (798)
..|+.+.|.+.+..+....- ..... .....+..+...|+.+.|...+......... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 66777777777666643210 00000 0011123344567777777776554432110 12345555666
Q ss_pred cCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKS----GVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
.|++++|..++++.... |..++. .+...+..++...|+.++|...+.++.+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777766665442 222221 1344444555666666666666666654
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1.9e-06 Score=77.54 Aligned_cols=121 Identities=8% Similarity=0.040 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003746 513 EMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P 590 (798)
Q Consensus 513 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 590 (798)
.+|++..+ +.|+. +.....++...|++++|...|+.++. +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44556677788888888888888865 455 4777888888888888888888888887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 591 MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 591 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
..| +...|..+..++...|++++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 67788888888888899999999999999999988888877776643
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=3e-06 Score=76.30 Aligned_cols=108 Identities=10% Similarity=-0.044 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
.++++.++ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555543 4555 3556788899999999999999987 4455 78899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 626 PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 626 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
|+++..+..++.++...|+.++|.+.++...+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999887543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00046 Score=83.67 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=118.7
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 003746 370 YLKCGSVEKARALFDAMIE----KDV----VSWSTMISGYAQHDQFSETLSLFMEMQHHGI---RPD--EATLVSVISAC 436 (798)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~ 436 (798)
+...|++++|...+++... .+. ..++.+...+...|++++|...+++.....- .+. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3456666666666655421 121 2344555556667777777777766543210 011 12222333344
Q ss_pred hcccchhHHHHHHHHHHHc----CCCC---cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChH
Q 003746 437 THLVALDQGKWIHAYIRKN----GLKI---NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 509 (798)
...|+++.|...++..... +... .... +..+...+...|+++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~~la~~~~~~G~~~ 590 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL-------------------------------LRIRAQLLWEWARLD 590 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH-------------------------------HHHHHHHHHHhcCHH
Confidence 4555565555555444331 1100 1111 222233334445555
Q ss_pred HHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH-----HHHHHHHHhcCCHH
Q 003746 510 KSLEMFSEMKKS--GVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-----GCMVDLLGRAGMLK 580 (798)
Q Consensus 510 ~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~ 580 (798)
+|...+++.... ...|. ...+..+.......|+.++|.+.++.+..-..-......+ ......+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 555555444321 01111 1123333344455566666666665553211100000000 01123334466666
Q ss_pred HHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHH
Q 003746 581 EAEELIESMPMS--PDV----ATWGALLGACKKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 581 ~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
.|.+.+...... ... ..+..+..++...|+.++|...++++++.. ++....+..++.+|...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 666666554211 111 113345555666677777777777666531 11223455666667777777777
Q ss_pred HHHHHHHHh
Q 003746 649 LEVRGMMVR 657 (798)
Q Consensus 649 ~~~~~~m~~ 657 (798)
.+.+.+..+
T Consensus 751 ~~~L~~Al~ 759 (903)
T PRK04841 751 QRVLLEALK 759 (903)
T ss_pred HHHHHHHHH
Confidence 777666654
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=6.2e-06 Score=78.56 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=98.7
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hhH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC-KKHGD--HEM 613 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~ 613 (798)
.++.+++...++..++ ..| +...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777765 344 5888999999999999999999999888 4455 677888888874 67677 599
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
|.++++++++.+|+++..+..++.++...|++++|...++++.+...
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999987543
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.9e-07 Score=59.66 Aligned_cols=33 Identities=42% Similarity=0.616 Sum_probs=26.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 003746 161 GFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 193 (798)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=5e-06 Score=73.34 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444556677788999999999999987 4455 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003746 641 SKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~ 658 (798)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988763
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=4.5e-07 Score=57.93 Aligned_cols=33 Identities=42% Similarity=0.799 Sum_probs=23.2
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003746 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387 (798)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (798)
+..||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 456666677777777777777777777777763
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0048 Score=64.53 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC-cHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 407 FSETLSLFMEMQHHG-IRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI-NSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
.+.....++++...- ..| ..+|...++..-+..-++.|+.+|..+.+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555555554432 233 3456667777777777888888888888776666 7778888887766 36677777777
Q ss_pred hhcCCC--Cc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-
Q 003746 485 HGTEEK--GV-SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHR- 558 (798)
Q Consensus 485 ~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 558 (798)
+--..+ |. .--+.-+.-+...++-..|..+|++....++.||.. .|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 743322 22 223444555566666667777777777665555543 566666666666666666666666544433
Q ss_pred -CcCCcchHHHHHHHHHhcCCHH
Q 003746 559 -LEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 559 -~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
.+|...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
No 114
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.39 E-value=0.00066 Score=72.31 Aligned_cols=265 Identities=13% Similarity=0.029 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHH-HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHh---
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHG-IRPDEATLVSV-ISACTHLVALDQGKWIHAYIRKNGLKINSILGT--- 465 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 465 (798)
...|..+...+...|+.+++...+.+..+.. ..++......+ ...+...|+++.+..+++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 4567777777777888888777776655432 12233222222 2234577999999999999888743 3333333
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEKGV---SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMG 541 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 541 (798)
.+.......|..+.+.+.+......+. ..+..+...+...|++++|++.+++..+. .|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 222222335666677777665333332 34445567889999999999999999985 4554 46677778899999
Q ss_pred cHHHHHHHHHHHHHhCCCcCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHHcCChh
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNS--KHYGCMVDLLGRAGMLKEAEELIESM-PMSP--DVATW--G--ALLGACKKHGDHE 612 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~--~--~l~~~~~~~g~~~ 612 (798)
++++|..++++..+.....|+. ..|..+...+...|++++|.+++++. ...| ..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987642222332 34557889999999999999999986 2223 21111 1 2333444556544
Q ss_pred HHHHH---HHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 613 MGERV---GRKLVELQPDH--DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 613 ~A~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.+. ........|.. .......+.++...|++++|.+.++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44443 22211111221 122235667788899999999999988753
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=2.1e-05 Score=88.82 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=105.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGC 568 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 568 (798)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+.+++|....++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777788888888888888888888887 578776 566677888888888888888888865 4564 677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 569 MVDLLGRAGMLKEAEELIESMP-MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
+...+.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|...|+++++...+-..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 8888888888888888888872 234 4778888888888888888888888888876544333
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=3.3e-05 Score=88.33 Aligned_cols=200 Identities=16% Similarity=0.176 Sum_probs=164.4
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK--------GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT 529 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 529 (798)
+.....|-..+.-....+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556666777778889999999998876532 2458999999999999888999999999874 222346
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVATWGALLGAC 605 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 605 (798)
|..|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|.++++++ ..-| -.....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999876 56788999999999999999999999887 2223 344455556666
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
.++|+.+.+..+|+..+.-.|.-...|..+.++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999998889999999989999999999999999987764
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=3e-05 Score=73.49 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003746 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGA 600 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 600 (798)
..|+......+-.++...|+-+....+....... ..-|.......+....+.|++.+|...|.+. .-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4565443355667777888888888887776432 2224556666899999999999999999998 44568999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+..+|-+.|+.++|...|.+++++.|+++.++..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988876543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=5.5e-05 Score=72.09 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=116.1
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
+-.|.+.|+++....-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777888777654443322211 01223566778888888877742 334557888889999999999999
Q ss_pred HHHHHHHHhCCCcC-CcchHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 548 RHFNSMIQEHRLEP-NSKHYGCMVDL-LGRAGM--LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 548 ~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
..|++..+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999875 556 57888888886 467787 59999999998 4455 6788999999999999999999999999
Q ss_pred HhcCCCCcchHHHH
Q 003746 622 VELQPDHDGFHVLL 635 (798)
Q Consensus 622 ~~~~p~~~~~~~~l 635 (798)
+++.|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99988776544433
No 119
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.0002 Score=73.50 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
++..+-..+...++.++|+.++.++.+. .|+..| +|+.--.++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHH
Confidence 4555555566666777777777766653 343332 2222222223
Q ss_pred hcC-CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHH
Q 003746 473 KLG-CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLA--DKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 473 ~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 545 (798)
+.| ++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+. .| |...|.....++.+.|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHH
Confidence 333 345666665554432 334555554444445542 5667777777764 33 34466666667777777777
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCh
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA---GM----LKEAEELIESM-PMSP-DVATWGALLGACKKH----GDH 611 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~ 611 (798)
+++.++++++. .| +...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+... ++.
T Consensus 161 eL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 161 ELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 77777777653 23 345555555444443 22 24566666444 4455 678899888888774 345
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKG------------------RWDDVLEVRGMMV 656 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 656 (798)
.+|.+.+.++++.+|+++.....|+++|.... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67888999988899999888899999998642 2356777777763
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=6.1e-05 Score=78.92 Aligned_cols=249 Identities=15% Similarity=0.141 Sum_probs=162.6
Q ss_pred HhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHH
Q 003746 371 LKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGK 446 (798)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~ 446 (798)
.+.|++.+|.-.|+..+.+ +...|--|......+++-..|+..+++.++. .|+ ...+..|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3788888888888887655 4567888888888888888888888887764 554 344445555556666666666
Q ss_pred HHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCC
Q 003746 447 WIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK-KSGVTP 525 (798)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p 525 (798)
..++.-++..++- ..+... ...++.+. + ..+..........++|-++. ..+.++
T Consensus 374 ~~L~~Wi~~~p~y-----~~l~~a-~~~~~~~~--------------~-----~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 374 KMLDKWIRNKPKY-----VHLVSA-GENEDFEN--------------T-----KSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHhCccc-----hhcccc-CccccccC--------------C-----cCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 6665555443220 000000 00000000 0 00001111223344454443 444345
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 602 (798)
|......|.-.|.-.|.+++|...|+.++. ++| |...||-|...++...+.++|+.-|.++ .++|. +.++..|.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 555666666667778899999999999875 677 4788999999999999999999999888 77887 55888899
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC-----C-----cchHHHHHHHHHhcCChhHHH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPD-----H-----DGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~ 649 (798)
-+|...|.+++|.+.|-.++.+.+. . ..++..|-.++...++.|-+.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9999999999999999888876554 1 135555655666666655433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.0015 Score=70.60 Aligned_cols=211 Identities=11% Similarity=0.113 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 003746 361 ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV 440 (798)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 440 (798)
..-..+...+...|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.+......
T Consensus 399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 34445566677888888888888874 5788888999999999999888887766 3688888888777776666
Q ss_pred chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 441 ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+-+ ..+|-....+..+.++++.|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 677777776654322 11222233344678888888887655433 45788888888888888888888888
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 518 MKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 518 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
-.. ..||.. .|+.+-.+|.+.|+-.+|...+++..+ .+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 776 577765 688888888888888888888888866 33 334455556666677888888888888776
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=5.9e-05 Score=74.96 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC-C-cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cc---hH
Q 003746 424 PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK-I-NSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VS---SW 495 (798)
Q Consensus 424 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~---~~ 495 (798)
.....+......+...|+++.|...++.+++.... + ....+..+...|.+.|++++|...++.+.+.+ .. +|
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888999999999999999876432 1 12466778899999999999999999886432 22 46
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH
Q 003746 496 NALIIGFAMN--------GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567 (798)
Q Consensus 496 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 567 (798)
..+..++... |+.++|++.|+++... .|+.......+..... .. ... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~---~~------~~~-~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY---LR------NRL-A--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH---HH------HHH-H--------HHHH
Confidence 6666666654 7889999999999884 5654322111111100 00 000 0 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 568 CMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677889999999999998887 2233 3568889999999999999999998888766653
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=2e-05 Score=70.48 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
..|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4453 455667777888888888888888876 3334 677888888888888999999999999999999998999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.+|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998877643
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=4.3e-05 Score=82.10 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|... ...|| ...||++-.+|.+.|+-.+|..
T Consensus 498 ~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred chhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 4555666666555443 333 2455555666666777777777777665 45564 5577777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.++++.+-++..++....-+....|.|++|.+.+..+.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777777766666655555555556777777777777777653
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00044 Score=71.44 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=111.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 569 (798)
...+-...-.+...|.+++|+..++.+... .||...|..+. ..+...++.++|.+.+++++. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566778889999999998874 67777665554 677888999999999998875 5676 5566678
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.++|.+.|++++|..+++.. ..+.|+..|..|..+|...|+..++..... ..|.-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHH
Confidence 88899999999999988887 334478889999999999998887765543 45677899999
Q ss_pred HHHHHHHHHhCC
Q 003746 648 VLEVRGMMVRRG 659 (798)
Q Consensus 648 a~~~~~~m~~~~ 659 (798)
|........++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 998888887654
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.0006 Score=78.50 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=151.1
Q ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-HHHHH
Q 003746 326 ECYINLQNALIHMYSSCGEITTAEKLFDAGHNL--------DLISWNSMISGYLKCGSVEKARALFDAMIEK-D-VVSWS 395 (798)
Q Consensus 326 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~ 395 (798)
+.+...|-..|......+++++|++++++..+. -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 344556666777777777777777777652211 1246777777776777777777888777543 3 34577
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLK-INSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 474 (798)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++..+++.-.. .......-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888764 3345566777777777777777888888777765222 2344555667777889
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCc
Q 003746 475 GCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGL 542 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~ 542 (798)
|+.+.++.+|+..... -...|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..-...|+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999887643 45689999999999999999999999999988877653 34444443333344
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00029 Score=79.74 Aligned_cols=141 Identities=11% Similarity=0.143 Sum_probs=114.6
Q ss_pred CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003746 457 LKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--K-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT-FVG 532 (798)
Q Consensus 457 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 532 (798)
...+...+-.|.....+.|.+++|..+++...+ | +...+..++.++.+.+++++|+..+++... ..|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 455678888899999999999999999998875 3 356788889999999999999999999998 4777765 455
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALL 602 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 602 (798)
+..++.+.|++++|..+|+++... .|+ ...+..+...+...|+.++|...|++. ...|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 557788999999999999999762 344 788889999999999999999999988 2334455555444
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00023 Score=67.61 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=94.3
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 541 (798)
.-+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3444555556666666665555332 23334555666677777777777777776653 2445556666667777777
Q ss_pred cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHH
Q 003746 542 LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMS--PDVATWGALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (798)
+.++|..-|.+..+ +.| +...++.|.-.|.-.|+++.|..++.+.... .|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776654 344 3556666666677777777777776665222 25556666666666777777776665
Q ss_pred HHH
Q 003746 619 RKL 621 (798)
Q Consensus 619 ~~~ 621 (798)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.3e-06 Score=53.96 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.05 E-value=0.025 Score=59.37 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcC---CHHHHHHHHhhcCC---CC-cchHHHHHHHHHHcCChHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLG---CVDNALEVFHGTEE---KG-VSSWNALIIGFAMNGLADKSLEMF 515 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~ 515 (798)
+++..+++..+..-..-+..+|..+.+--...- ..+...+.+++... .+ ..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 345556665555433345555554443221111 13444444444432 22 346777788777888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 003746 516 SEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PM 591 (798)
Q Consensus 516 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 591 (798)
.+..+.+..+ +....++++.-++ .++.+-|.++|+.-++.+|- +..--.+.++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4445666666554 57899999999998886543 3445567889999999999999999998 23
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 592 SPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHD----GFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 592 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
.|| ..+|..++.--..-|+...+.++-++....-|.+. ..-..+.+-|.-.+....-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 443 56899999999999999999999988887666221 12334445666666665544444444
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7.6e-06 Score=53.19 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 003746 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDN 131 (798)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 131 (798)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=8.3e-05 Score=77.68 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
.+++..+...+++++|.++|+++.+. .|+ ....|+..|...++-.+|.+++++. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666667788888888877653 244 4445777777777778888887776 2233 667777777888899
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++++.|+.+++++.++.|++..+|..|+.+|...|++++|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999988775
No 133
>PLN02789 farnesyltranstransferase
Probab=98.01 E-value=0.00068 Score=69.57 Aligned_cols=184 Identities=10% Similarity=0.113 Sum_probs=134.2
Q ss_pred hhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCc-
Q 003746 469 DMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNG-LADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGL- 542 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 542 (798)
..+.+.++.++|+...+.+.+. +..+|+.-...+...| ++++++..++++.+. .|+. ..|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3345567778888888877654 3457777777777777 579999999999985 3443 356655555556665
Q ss_pred -HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCh----
Q 003746 543 -VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH---GDH---- 611 (798)
Q Consensus 543 -~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~---- 611 (798)
.+++..+++++++ ..| +...|+....++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3677888888875 456 5788888888999999999999999998 3333 677888877776554 222
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASK----GRWDDVLEVRGMMVR 657 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 657 (798)
+.++....++++++|++...+..++.++... ++..+|.+......+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677777899999999999999999999873 344567666665443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.00052 Score=70.96 Aligned_cols=119 Identities=22% Similarity=0.181 Sum_probs=105.9
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 612 (798)
.+...|..++|+..++.+++. .| |+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 455678999999999999863 45 5777778899999999999999999998 56676 778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|+..+.....-+|+++..|..|+.+|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0019 Score=73.97 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
|--+-..|...++++++..+++.+++.+|.|.....-++..|
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 333444445555555555555555555555544444444443
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=0.00018 Score=64.28 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=90.7
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003746 514 MFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P 590 (798)
Q Consensus 514 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 590 (798)
+|++... ..|+.. ....+...+...|++++|.+.|+.+... .| +...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 455543 4556667788889999999999988663 34 5778888999999999999999998887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 591 MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 591 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
..| +...|..+...+...|+++.|...+++++++.|++..+.
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 577888889999999999999999999999999987644
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0036 Score=71.79 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=139.5
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAGH--NLDL-ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH 404 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 404 (798)
+...+..|+..|...+++++|.++.+... .|+. ..|-.+...+.+.++..++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 44566777777877888888877776532 2332 2233333355566665554433 344444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
.++.-+..+...|...+ -+...+..+..+|.+.|..+++..+++.+++.. +-++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 55544444455555432 234466777778888888888888888888877 55778888888888888 888888886
Q ss_pred hhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc
Q 003746 485 HGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK 564 (798)
Q Consensus 485 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 564 (798)
.+. +..|...+++.++.++|.++... .|+.+.+. .++.+.+....+..--+.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHH
Confidence 544 33366777888888888888873 45543321 112222222112122233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACK 606 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 606 (798)
++--+...|-...+++++..+++.+ ...| |.....-++..|+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4444555566666677777776666 3333 4445555555554
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=1.9e-05 Score=50.92 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 003746 96 GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129 (798)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 129 (798)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2e-05 Score=50.80 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003746 259 LVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV 292 (798)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 292 (798)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.012 Score=56.25 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=39.7
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 578 MLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 578 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 445555555555 23455555555555666666666666666666666666666555555444445555443
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0044 Score=58.60 Aligned_cols=159 Identities=12% Similarity=0.172 Sum_probs=110.4
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 472 MKLGCVDNALEVFHGTEEKGVSSWNAL---IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
..+|+.+.|..+++.+..+=..++... ..-+-..|++++|+++++.+.+.+ +.|.+++.--+...-..|.--+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 345556666666555443211111111 112345688889999999888865 4456677666666666777778888
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHh
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG---DHEMGERVGRKLVE 623 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 623 (798)
-+....+. +..|.+.|.-+.++|...|++++|.-.++++ -..| +...+..+...+...| +.+.|.+.|.++++
T Consensus 142 ~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888775 5668889999999999999999999999998 3345 5666666766665444 77889999999999
Q ss_pred cCCCCcchHH
Q 003746 624 LQPDHDGFHV 633 (798)
Q Consensus 624 ~~p~~~~~~~ 633 (798)
+.|.+...+.
T Consensus 220 l~~~~~ral~ 229 (289)
T KOG3060|consen 220 LNPKNLRALF 229 (289)
T ss_pred hChHhHHHHH
Confidence 9996544333
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0012 Score=62.18 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=135.2
Q ss_pred cCCHHHHHHHHhhcCCC------Ccc---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcH
Q 003746 474 LGCVDNALEVFHGTEEK------GVS---SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLV 543 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~------~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 543 (798)
..+.++..+++.++... +.. .|.-++-+....|+.+.|...++++... + |...-...+- .-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 35678888888776531 122 3444555666788899999999998875 3 5554322222 224456889
Q ss_pred HHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
++|.++++.++++. +.|..+|---+-+.-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998752 335777777777777888877888776665 45568999999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCC
Q 003746 622 VELQPDHDGFHVLLSNIHASKG---RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 622 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 660 (798)
+=+.|-++.++-.++.++.-.| +.+-+++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999998887665 45567778877766443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00051 Score=71.90 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=95.2
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCc
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGL 542 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 542 (798)
...|+..+...++++.|..+|+++.+.+...+..|+..+...++-.+|++++++.... .| |...+..-...|...++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3445555666788888888888888887777777888888888888888888888864 34 33344444556778888
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 593 (798)
.+.|.++.+++++ ..|+ ..+|..|+..|.+.|++++|+..++.+|+.+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888875 5664 6788888888888888888888888886543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.00051 Score=62.11 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=62.1
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV----ATWGALLGACKKHGDHEM 613 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 613 (798)
.++.+.+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555666666666655432211 1222223445556666666666666665 111222 234445566666677777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
|+..++.. .-.|-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666552 22333345566677777777777777776654
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00019 Score=59.14 Aligned_cols=92 Identities=23% Similarity=0.218 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 3334 44677778888888899999999999998888888888888888899999
Q ss_pred ChhHHHHHHHHHHh
Q 003746 644 RWDDVLEVRGMMVR 657 (798)
Q Consensus 644 ~~~~a~~~~~~m~~ 657 (798)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00015 Score=70.30 Aligned_cols=99 Identities=22% Similarity=0.269 Sum_probs=78.9
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEM 613 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 613 (798)
..+.+++.+|+..|.++++ +.| |...|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888875 666 4666666778888888888888877766 55664 5689999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999998776666544
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=2.8e-05 Score=62.71 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP---DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 1122 455666678888888888888888888 777777777777778888888888888888
Q ss_pred HHH
Q 003746 652 RGM 654 (798)
Q Consensus 652 ~~~ 654 (798)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=5.6e-05 Score=58.27 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG-RWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 657 (798)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988765
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00036 Score=60.63 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIH 639 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 639 (798)
.++..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444445555555554444 11121 2234445555555555555555555555555443 23344555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.|++++|.+.++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555443
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.4e-05 Score=47.89 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRV 290 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 290 (798)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0005 Score=72.35 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDH 611 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 611 (798)
..+...|++++|++.|+++++ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 334455666666666666654 233 2445555555555566666666555555 3333 344555555555555666
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHH
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
++|+..++++++++|+++.+...+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666555544443
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0039 Score=59.41 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=126.4
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK-SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
+-..|...|.......-...-..++......+......-++.+. -.++.+.+.......|.+....-...|.+.|++++
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 44555555654433322222222222333333333333444333 33455566655555555555555678999999999
Q ss_pred HHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHH
Q 003746 546 GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKL 621 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 621 (798)
|.+..... -+.+....=+..+.+..+++-|.+.+++|..-.+..+.+.|..++.+ .+.+..|.-+|+++
T Consensus 127 Al~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 127 ALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 99987652 24555556677788999999999999999544567778878777754 34688899999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 622 VELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 622 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
-+..|..+-.....+.++...|+|++|..+++....+..
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 997777777888888889999999999999999887554
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0015 Score=71.87 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCcchHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CcHHHHHHHHHHHHH
Q 003746 490 KGVSSWNALIIGFAMN--G---LADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHM--------GLVDEGHRHFNSMIQ 555 (798)
Q Consensus 490 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 555 (798)
.+...|...+.+.... + ..++|+.+|++..+ ..||.. .+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555666665554322 2 25577888888777 467653 333332222111 112222333332211
Q ss_pred hCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 556 EHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 556 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1011122344555544444555666666655555 34455555555555555566666666666666666665553
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.00079 Score=58.45 Aligned_cols=104 Identities=10% Similarity=0.086 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 602 (798)
++..+...+...|++++|.+.|+.+++.+.-.| ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765421111 1234556777788888888888888776 22232 45677888
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.++...|+.+.|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888889999999999999999999876543
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0019 Score=58.30 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGC 568 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 568 (798)
|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 377777888888888775 3333 23334456677888888888888888764 22222 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677888889999999888776322 245567778888888999999998888763
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00012 Score=55.60 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=47.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667778888888888888888888888888888888888888888888888876543
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=6.1e-05 Score=47.22 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=27.9
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 003746 97 FIFNTMMRAYIQRNVPQQAICLYKLMLNNNV 127 (798)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (798)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.2 Score=56.24 Aligned_cols=159 Identities=10% Similarity=0.001 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 494 SWNALIIGFAMNGLAD---KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-+..|.+.|+.+--+ .+..|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567777777777655 455555554442 1223345566677787778888888888776332 4444433331 33
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcC
Q 003746 571 DLLGRAGMLKEAEELIESM-PM-SPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHASKG 643 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 643 (798)
..+...|++..+...++.. .+ ..+ ..+-..+..| .++|.+.+-.++..---.+.-. -..+-....+.....+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566666666665543 10 001 1111222223 3456665544432111111111 1122223445556667
Q ss_pred ChhHHHHHHHHHH
Q 003746 644 RWDDVLEVRGMMV 656 (798)
Q Consensus 644 ~~~~a~~~~~~m~ 656 (798)
+.++-.+.+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 7777776666665
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.22 Score=55.96 Aligned_cols=206 Identities=14% Similarity=0.035 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHh-CCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC---CCcchHHHHHHHHHcCCCchHHHHH
Q 003746 43 FKQFTQILSQMILT-GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES---PNGFIFNTMMRAYIQRNVPQQAICL 118 (798)
Q Consensus 43 ~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 118 (798)
++.+.+....+.+. +-.+-.-++.+|.. . +.|+.++|..+++.... .|..+...+-..|...|+.++|..+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl----~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL----F-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH----H-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444433 32333334444443 4 78999999988887643 3666888888899999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHH
Q 003746 119 YKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD----------LSAARKL 188 (798)
Q Consensus 119 ~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~ 188 (798)
|++.... -|+......++.++.+.+++..-.++-=++-+. ++.+++.+=++++.+...-. +.-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9988743 577777888888999888887655555444443 46666666666666654321 2334555
Q ss_pred HccCCCCC-c-ch---HHHHHHHHHhCCCHHHHHHHHhh-----CCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCC
Q 003746 189 FDESPVLD-L-VS---WNSILAGYVNADNVEEAKFIYNK-----MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPK 256 (798)
Q Consensus 189 f~~~~~~d-~-~~---~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 256 (798)
++.+...+ . .+ .-.-...+-..|++++|++++.. ....+...-+--++++.+.+++.+-.++-.+...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55544333 1 11 11112334467778888887732 2223445555667777777777776665555443
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0014 Score=58.29 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
...--+-..|++++|..+|.-+ -.. -+..-|..|..+|...+++++|+..|..+.-+.++||......+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456789999999999877 222 36778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 003746 646 DDVLEVRGMMVR 657 (798)
Q Consensus 646 ~~a~~~~~~m~~ 657 (798)
+.|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.19 Score=54.48 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=145.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC-CCc------------chHHHHHHHHHhCCCHHHHHHHHhhCCCCCch
Q 003746 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPV-LDL------------VSWNSILAGYVNADNVEEAKFIYNKMPERNII 229 (798)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~d~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 229 (798)
.|.+..|..|...-.+.-.++.|+..|-+... +.+ ..-.+=|++| -|.+++|.++|-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57888888888777777777777777755331 111 0111222332 5889999999998887775
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHH
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPKK-----DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSAC 304 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 304 (798)
-|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 467788888888888888664332 124788888888888888888888865432 12233444
Q ss_pred hccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003746 305 ANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFD 384 (798)
Q Consensus 305 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (798)
.+...+++-..+. ..++.+....-.+.+|+..-|.-++|.+.|-+-..|. +-+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4443333322221 2346677777888999999999999988886644443 23445567778888888877
Q ss_pred hcCCCCHHHHHH--------------HHHHHHhCCChHHHHHHHHHHH
Q 003746 385 AMIEKDVVSWST--------------MISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 385 ~m~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~ 418 (798)
...-|.+.+.-+ -|..+.+.|++-+|.+++.+|.
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 765554443211 1333445555555555555553
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.002 Score=60.16 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGC 568 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 568 (798)
...+..+...+...|++++|+..|++....+..|+ ...+..+...+.+.|++++|...+++.++ ..| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34566666677777777777777777766433322 23566666677777777777777777755 234 2445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
+...|...|+...+..-++.. ...+++|.+.++++++++|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 012577888888888888887 4444455555544
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.53 E-value=0.0008 Score=62.89 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666777777777777777665 22222 4578888888899999999999999999999998888888888
Q ss_pred HHHhcCC
Q 003746 638 IHASKGR 644 (798)
Q Consensus 638 ~~~~~g~ 644 (798)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.0011 Score=69.91 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR 575 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 575 (798)
....+...|++++|+++|++.++. .|+ ...|..+..++.+.|++++|+..++++++ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 555 45777788899999999999999999976 456 47788889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSPDVATWGALL 602 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 602 (798)
.|++++|...|++. .+.|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 5556544433333
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.00066 Score=63.22 Aligned_cols=93 Identities=12% Similarity=-0.100 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888877 22222 3578999999999999999999999999999999888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 003746 638 IHA-------SKGRWDDVLEVRGMM 655 (798)
Q Consensus 638 ~~~-------~~g~~~~a~~~~~~m 655 (798)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666544
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.46 E-value=0.00031 Score=53.27 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999888 4456 577899999999999999999999999999999874
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00099 Score=64.70 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
.+-+.+.+++++|+..+.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|.....|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34466789999999999987 6666 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003746 648 VLEVRGMMVRR 658 (798)
Q Consensus 648 a~~~~~~m~~~ 658 (798)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999987663
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0012 Score=64.53 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=90.6
Q ss_pred cC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCcchHH
Q 003746 560 EP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG---DHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 560 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
.| |...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.... ...++..++++++.++|++.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6999999999999999999999999887 4444 6777888887775443 467899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCcc
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 666 (798)
.|+-.+...|++.+|...++.|.+......|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999998765444443
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0019 Score=52.88 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555554443 1112 234555555666666666666666666665555
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0057 Score=62.04 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA-CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 572 (798)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++. +..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57777777778888888888998887542 2233445444444 33356777799999999986 44567888899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 573 LGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999997 22233 358999999999999999999999999999888543
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0018 Score=65.42 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=103.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHhCCCcCCcch-------------
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL--GACRHMGLVDEGHRHFNSMIQEHRLEPNSKH------------- 565 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------- 565 (798)
++...|++++|...--...+. .++. .+..++ .++...++.+.|...|++.++ +.|+-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 445566666666655554442 2211 111122 223345566667777666543 3443211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMS-----PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+..=.+...+.|.+.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++++++|.-...+..-++.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 111234456889999999999887 444 45556777777788899999999999999999999888899999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++|++|.+.+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998887644
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.0071 Score=66.54 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhc--------CCHHHHHHHHH
Q 003746 522 GVTPNEITFVGVLGACRHM-----GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRA--------GMLKEAEELIE 587 (798)
Q Consensus 522 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 587 (798)
+...|...|...+.+.... +..++|..+|+++++ ..|+ ...|..+..+|... ++++.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456667888888775442 347799999999986 6787 55566554444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 588 SM---P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 588 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+. + ...+..+|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 2335678888877777889999999999999999995 67999999999999999999999998876554
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.28 Score=50.59 Aligned_cols=369 Identities=16% Similarity=0.119 Sum_probs=212.9
Q ss_pred CCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHH
Q 003746 59 IADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGF---IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYP 135 (798)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~ 135 (798)
..|+..|-.|+. -|. ..|..+..++++++|.+|-.. .|.--|++-....+++.+..+|.+.+...+. ...|.
T Consensus 39 PtnI~S~fqLiq--~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQ--YLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWM 113 (660)
T ss_pred chhHHHHHHHHH--HHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHH
Confidence 357889999999 888 899999999999999887544 7999999988899999999999998876544 44444
Q ss_pred HHHHHHhccCChHH------HHHHHHHHHH-hCCCCc-hhHHHHHHHHHHh---cCC------hHHHHHHHccCCC-C--
Q 003746 136 LLAQASALRLSVFE------GKLIHDHVLK-AGFDSD-VYVNNTLINMYAV---CGD------LSAARKLFDESPV-L-- 195 (798)
Q Consensus 136 ~ll~a~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~y~~---~g~------~~~A~~~f~~~~~-~-- 195 (798)
.-|.--.+..+.-. -.+.++.++. .+++|- ...|+..+..+-. .|. +|..++.+.++.. |
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 44444333332222 2345555554 244443 3456665554422 233 3444555554431 1
Q ss_pred -------CcchHHHHHHHHHh---CC----CHHHHHHHHhhCCCC-----------------------------------
Q 003746 196 -------DLVSWNSILAGYVN---AD----NVEEAKFIYNKMPER----------------------------------- 226 (798)
Q Consensus 196 -------d~~~~~~li~~~~~---~g----~~~~A~~~~~~m~~~----------------------------------- 226 (798)
|-..|..=+.-... -| -+-.|...+++...-
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 11111111110000 00 112223333222110
Q ss_pred -------Cc------hHHHHHHH--------------HHhhcCCHHHHHHHHhcCCCCCcccHHHHHH-HHHhcCChhHH
Q 003746 227 -------NI------IASNSMIV--------------LFGRKGNVAEACRLFKEMPKKDLVSWSALIS-CYEQNEMYEEA 278 (798)
Q Consensus 227 -------~~------~~~~~li~--------------~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A 278 (798)
++ .+++..+. -+...++-+.|.+..+.-.+- ..+.+..++ .|--..+-+..
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-SPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-CCchheeHHHHHhhcccHHHH
Confidence 00 11221111 122345666666655443221 111111111 11111111111
Q ss_pred HHHHHHHH----------H----CCC---------------CCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC-Cccc
Q 003746 279 LVLFMNMI----------D----HRV---------------MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECY 328 (798)
Q Consensus 279 ~~l~~~m~----------~----~g~---------------~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~ 328 (798)
...|++.. + .+. .-=...|...+.+..+...++.|+.+|..+.+.| +.++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 11111110 0 011 1123455667777778888999999999999999 6789
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCCC---C--HHHHHHHHHH
Q 003746 329 INLQNALIHMYSSCGEITTAEKLFDAGHN--LDL-ISWNSMISGYLKCGSVEKARALFDAMIEK---D--VVSWSTMISG 400 (798)
Q Consensus 329 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~~li~~ 400 (798)
+.++++++..|+ .|+..-|.++|+.|.. ||. .--+..+.-+...++-+.|+.+|+...++ + ...|..||.-
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~Y 511 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEY 511 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Confidence 999999999887 7888999999987542 444 44466777778899999999999976544 2 3468888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
=..-|+...+..+=++|... -|...+.....+-+
T Consensus 512 Es~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 512 ESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 78888888888887777663 45554444444433
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00037 Score=53.46 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=42.1
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|++.++++++..|++..+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888766553
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.00095 Score=52.01 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...|.+.++++.|.+.++++++++|+++..+...+.+|...|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999988888899999999999999999888876543
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.23 E-value=0.3 Score=49.54 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=155.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDE--ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
-.|++++|.+-|+.|... |.. .-+..+.-..-+.|+.+.|+++-+..-..- +.-.....++++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 347777777777777642 211 112223333345677777777766665442 22345567788888888999999
Q ss_pred HHHHhhcC-----CCCcc--hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCcHHHHHHH
Q 003746 481 LEVFHGTE-----EKGVS--SWNALIIGFAM---NGLADKSLEMFSEMKKSGVTPNEIT-FVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 481 ~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 549 (798)
+++++.-. ++|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887544 34432 22333333221 2345556655555554 6788763 44445788999999999999
Q ss_pred HHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 550 FNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 550 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
++.+-+ .+|.+...... .+.+.|+- +.+-+++. .++| +..+.-.+..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999854 46666554332 34455542 22222222 3345 4667777888888999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 003746 625 QPDHDGFHVLLSNIHASK-GRWDDVLEVRGMMVR 657 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 657 (798)
.|.. .+|.+|+++-... |+-.++...+.+..+
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 9986 6788898887655 998888888776654
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.00053 Score=52.53 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.|++++|.++|+++ ...| +..++..+..+|.+.|++++|...++++....|+++.++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44455555555444 1122 444455555555555555555555555555555554444333
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.16 E-value=0.0009 Score=53.83 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGV-TPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEA 582 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 582 (798)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..++++ .+ ..|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665322 11233344455666666666666666655 11 2222 22222345555666666666
Q ss_pred HHHHHh
Q 003746 583 EELIES 588 (798)
Q Consensus 583 ~~~~~~ 588 (798)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.0079 Score=55.96 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGC 568 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 568 (798)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566666666667777777777777665422221 12555666666666777777766666654 2332 334444
Q ss_pred HHHHHH
Q 003746 569 MVDLLG 574 (798)
Q Consensus 569 l~~~~~ 574 (798)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.071 Score=52.65 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=104.1
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCcc------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGVS------SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH- 539 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 539 (798)
....+.+.|++++|.+.|+.+....+. ..-.++.+|.+.+++++|+..|++..+....-..+.+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877654321 2234566777888888888888888774222122344444433321
Q ss_pred -cC---------------c---HHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003746 540 -MG---------------L---VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA 600 (798)
Q Consensus 540 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 600 (798)
.+ + ..+|...|+.+++++ |+ ..-..+|...+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 233445555554432 32 223344444333331000000 113
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..-|.+.|++.-|..-++.+++--|+.+ .....+..+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45567888999999999999999888754 456678899999999999999887664
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00031 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0029 Score=63.64 Aligned_cols=256 Identities=12% Similarity=0.045 Sum_probs=145.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcccchhHHHHHHHHHH--Hc--CCC-CcHHHHhHHHhhH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDE----ATLVSVISACTHLVALDQGKWIHAYIR--KN--GLK-INSILGTTLIDMY 471 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li~~~ 471 (798)
+++.|+.+..+.+|+...+.|- -|. ..|..+-++|.-.+++++|.++|..=+ .. |-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5666777777777776666552 232 234444556666667777766654311 10 100 0111222233334
Q ss_pred HhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH--
Q 003746 472 MKLGCVDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGL--------------------ADKSLEMFSEMKK-- 520 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~-- 520 (798)
--.|.+++|...-.+-.. + ....+-.+...|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666544322110 0 11234445555544432 2344455544222
Q ss_pred --CCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH---HHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----
Q 003746 521 --SGVT-PNEITFVGVLGACRHMGLVDEGHRHFNSM---IQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM---- 589 (798)
Q Consensus 521 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 589 (798)
.|-. .-...|..|...|.-.|+++.|+..++.- .+++|-.. ....+..+.+.+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 01124555666666678899998876653 23444333 2456778888888999999999888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 590 ---PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVEL----Q--PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 590 ---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+- .....+..+|.+.|....+++.|+..+.+=+.+ + -.....+..|+++|...|..+.|..+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 123456678888888888899998887665542 1 22345677899999999999999887765543
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.23 Score=50.55 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCcCC--cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-----NEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEH-RLEPN--SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 564 (798)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45566777888899999999998887643322 121 23444446667788989999888875321 22222 23
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 003746 565 HYGCMVDLLGR--AGMLKEAEELIESMP 590 (798)
Q Consensus 565 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 590 (798)
....|++++-. ...+++|..-|+++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44555666643 346777777777773
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.0046 Score=61.50 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSN 637 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 637 (798)
|..-+..+.+.|++++|...|+.. ...|+ ..++..+...|...|+++.|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333344444445555555555554 11222 2344556666666666666666666666665553 334444566
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003746 638 IHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777766666654
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.04 E-value=0.17 Score=51.25 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=120.6
Q ss_pred cCCHHHHHHHHhhcC---CCCcchHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHH
Q 003746 474 LGCVDNALEVFHGTE---EKGVSSWNALIIG--FAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a 546 (798)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -+..|.-.-.+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555555544322 2343333333333 2346888888888888876 23222 233444444677888888
Q ss_pred HHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHH--HHHHHHHH---HHcCChhHHHH
Q 003746 547 HRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM----PMSPDVAT--WGALLGAC---KKHGDHEMGER 616 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~--~~~l~~~~---~~~g~~~~A~~ 616 (798)
.++-+..- +..|. .-.....++..+..|+++.|+++.+.- .++++..- --.|+.+- .-..+...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888774 45565 556778888889999999999998765 23454331 22233322 22356778888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..++.|+-...-+.-+.+|.+.|+..++-++++.+.+...
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 88999999999888888888899999999999999998877543
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.061 Score=54.79 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHH
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM-GLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLL 573 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 573 (798)
+..|...|++..|-..+.++-+ .|... |++++|.++|++..+-+.-... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444444322 34444 5566666666655443211111 33445566777
Q ss_pred HhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 574 GRAGMLKEAEELIESMP---MS-----PDVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
.+.|++++|.++|++.. .. .+.. .+-..+-.+...||...|.+.+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 78888888888877651 11 1111 122233345566888888888888888877543
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.02 E-value=0.14 Score=46.31 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHH
Q 003746 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL-EPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVAT 597 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 597 (798)
..|+...-..|..+....|+..||...|++... |+ .-|....-.+.++....+++.+|...+++. ..+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 466666667777888888888899888888764 44 335677777788888888888888888876 2122 2223
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.-.+...+...|+++.|+..|+.++...|+. ..-...+..+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4456778888999999999999999988874 4455666788999998888776665554
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0013 Score=50.47 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCC
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG-DHEMGERVGRKLVELQP 626 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 626 (798)
+..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455667777788888888888888776 3445 5668888888898988 79999999999998887
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.054 Score=57.96 Aligned_cols=90 Identities=9% Similarity=0.075 Sum_probs=65.1
Q ss_pred HhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003746 304 CANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALF 383 (798)
Q Consensus 304 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 383 (798)
+.+...+..|.++|..+-. ...++++....+++++|.++-++.++--...|-....-++...++++|.+.|
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 3344445555555554432 2467888899999999999999877766666666677777888888887665
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003746 384 DAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420 (798)
Q Consensus 384 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 420 (798)
. +.|+-.||.++++++...
T Consensus 828 h------------------kAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 H------------------KAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred H------------------HhcchHHHHHHHHHhhhh
Confidence 4 678889999999887654
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.89 E-value=0.71 Score=48.00 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=51.7
Q ss_pred CCCChhHHHHhhhcCCC---CC------cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccC
Q 003746 77 PFIEMSYSFKIFAFLES---PN------GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQA--SALRL 145 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a--~~~~~ 145 (798)
+.+++.+|.++|.++-. .+ .+.-+.+|++|..++-.. -........+. .| ...|..+..+ +-+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~-Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDL-MEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHH-HHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 55666666666665532 11 223445566665543222 11222222211 12 3344444444 23455
Q ss_pred ChHHHHHHHHHHHHh--CC------------CCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 003746 146 SVFEGKLIHDHVLKA--GF------------DSDVYVNNTLINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 146 ~~~~a~~~~~~~~~~--g~------------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 193 (798)
.+..|.+.+..-... +. -+|-+.-+..++.+...|++.+++.++++|.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 566665555544333 11 1223333445555566666666666655543
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.019 Score=51.07 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=21.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
.-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|...
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444443 233322 2333333334444444444444444
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.87 E-value=0.004 Score=64.87 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|+.+..+|...|++++|+..|+++++++|++... |+.++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777777776633 666777777777777777776666653
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.87 E-value=0.74 Score=47.87 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHhcCc-HHHHHHHHHHHHHhCCCcC-CcchHHHHHH----HHHhc---C---CHHHHHHHHHhCCCCC----CHHHHHH
Q 003746 537 CRHMGL-VDEGHRHFNSMIQEHRLEP-NSKHYGCMVD----LLGRA---G---MLKEAEELIESMPMSP----DVATWGA 600 (798)
Q Consensus 537 ~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~----~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ 600 (798)
+.+.|. -++|.++++.+.+ +.| |...-|.+.. .|..+ . ++=+-+.++++.++.| +...-|.
T Consensus 389 lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445555 7777888877754 333 3333332221 12111 1 1223344455666555 3345555
Q ss_pred HHHH--HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGA--CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
|..| +..+|++.++.-...-+.++.| .+.+|.++|-......++++|..++..+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 6555 3578999999988888889999 67899999999999999999999998653
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.86 E-value=0.012 Score=50.38 Aligned_cols=87 Identities=18% Similarity=0.090 Sum_probs=57.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 003746 569 MVDLLGRAGMLKEAEELIESM---PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPD---HDGFHVLLSNIHA 640 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 640 (798)
+..++-..|+.++|..+|++. +.... ...+-.+...++..|++++|..++++.++..|+ +......++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666655 22211 235556777777888888888888888777777 5556666667777
Q ss_pred hcCChhHHHHHHHHH
Q 003746 641 SKGRWDDVLEVRGMM 655 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m 655 (798)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888887776443
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.84 E-value=0.026 Score=50.82 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=92.6
Q ss_pred HHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-
Q 003746 552 SMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM---PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD- 627 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 627 (798)
+..++....|++.+--.|...+.+.|+..||...|++. .+-.|....-.+.++...-++...|...++++.+-.|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344456788888889999999999999999999987 45568888889999999999999999999999998875
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 628 -HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 628 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.+....+++..|...|+.++|+.-|+-..+.-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678889999999999999999999887643
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.80 E-value=0.77 Score=47.20 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=73.9
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
+.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-.++-|-.++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455667788888887777777777888888888888888776654332 223467777888888888888887
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
.+..++ .+..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 776552 2245677788888888887765543
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.15 Score=52.78 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=103.7
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC---Ccc----hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK---GVS----SWNALIIGFAM---NGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
|+-.|-...+++.-.++++.+... ++. .-....-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344577777788888887777653 111 11123344445 78889999999886666667777788777666
Q ss_pred HHh---------cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH----HHHHH---HhC-----C--CCC
Q 003746 537 CRH---------MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE----AEELI---ESM-----P--MSP 593 (798)
Q Consensus 537 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~--~~p 593 (798)
|-. ....++|...|.+. +.+.|+..+--.++.++...|...+ ..++- ... . -..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 23477788888766 4566776555455555555554222 22222 111 1 124
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
|-..+.+++.++.-.|+.+.|.+.+++++.+.|..-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 555668899999999999999999999999987754
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.75 E-value=0.0044 Score=48.15 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
-..|.+.+++++|.++++++ ...| +...|......+...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35678888999999998887 4445 56778888889999999999999999999999988765443
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.038 Score=47.36 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLL 573 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 573 (798)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..++++...++.-.+ +......+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999998876653 3567777888999999999999998877532211 122223344567
Q ss_pred HhcCCHHHHHHHHHh
Q 003746 574 GRAGMLKEAEELIES 588 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~ 588 (798)
...|+.++|.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877654
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.27 Score=52.93 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHHHHhccCchHHHHHH--HHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 003746 298 VSVLSACANLTVVKAGTSV--HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGS 375 (798)
Q Consensus 298 ~~ll~a~~~~~~~~~a~~i--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (798)
...-.+|.+..++.--+-+ ++.+.+.|-.|+... +.+.++-.|++.+|-++|. ++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCc
Confidence 3334444444444433322 344555565565443 3344555567777777665 5555
Q ss_pred HHHHHHHHHhc
Q 003746 376 VEKARALFDAM 386 (798)
Q Consensus 376 ~~~A~~~~~~m 386 (798)
-..|.++|..|
T Consensus 661 enRAlEmyTDl 671 (1081)
T KOG1538|consen 661 ENRALEMYTDL 671 (1081)
T ss_pred hhhHHHHHHHH
Confidence 56666666554
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.70 E-value=0.0025 Score=43.66 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
.+|..+..+|...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988877753
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.67 E-value=0.02 Score=58.06 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR-AGMLKEAEELIESM--PMSPDVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 604 (798)
.+|..++..+.+.+.++.|+.+|.++.+.. ..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888889999999999997532 2245566666666444 56667799999988 445678899999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...++.+.|..+|++++..-|.+. ..|......=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 46777777778889999999999888763
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.65 E-value=0.027 Score=46.44 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccc--------chhHHHHHHHHHHHcCCCCcHHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLV--------ALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
|-...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566667777999999999999999999 999999999999887653 23455778899999999999999
Q ss_pred HhHHHhhHHh
Q 003746 464 GTTLIDMYMK 473 (798)
Q Consensus 464 ~~~li~~~~~ 473 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887665
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.26 Score=47.15 Aligned_cols=136 Identities=8% Similarity=0.031 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-----CCCcHHHHhHHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-----LKINSILGTTLI 468 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li 468 (798)
-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.|+.+.+...++...+.. ......+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 355666677777888888888888876656677777778888888888888888888776653 233333333344
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFV 531 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 531 (798)
..|.-..++..|...|.+++..| ++.-|.-.-+..-.|+..+|++..+.|... .|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45666778888888888877654 555555555555678889999999999874 55544433
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1.6 Score=48.40 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chHHHHHHHHHhhcC---CHHHHHHHHhcCCC--CCcccHHHHHHHHH
Q 003746 199 SWNSILAGYVNADNVEEAKFIYNKMPERN---IIASNSMIVLFGRKG---NVAEACRLFKEMPK--KDLVSWSALISCYE 270 (798)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~y~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 270 (798)
+-..+|.-++..+.+..|+++-..+..+. ..++.....-+.+.. +-+-+..+=+++.. ..-++|..+.+-..
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 34456778888899999999988887765 566666666666653 33334444455555 46788999998888
Q ss_pred hcCChhHHHHHHHH
Q 003746 271 QNEMYEEALVLFMN 284 (798)
Q Consensus 271 ~~g~~~~A~~l~~~ 284 (798)
+.|+.+-|..+++.
T Consensus 519 ~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 519 QEGRFELARKLLEL 532 (829)
T ss_pred hcCcHHHHHHHHhc
Confidence 99999999888754
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.61 E-value=0.02 Score=60.50 Aligned_cols=123 Identities=8% Similarity=0.052 Sum_probs=92.9
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 425 (798)
|.+..+.+......+++......+++.+..++.+.... -..|..++|..|.+.|..++++.+++.=...|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 44445555666666677666777888888887766432 123456899999999999999999999889999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 426 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+|++.++..+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988888776666666555444444444
No 207
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.53 E-value=0.03 Score=46.20 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=68.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNNNV-GVDNYTYPLLAQASALRL--------SVFEGKLIHDHVLKAGFDSDVYV 168 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 168 (798)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++++.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777888999999999999999999 899999999999976543 23456789999999999999999
Q ss_pred HHHHHHHHHh
Q 003746 169 NNTLINMYAV 178 (798)
Q Consensus 169 ~~~li~~y~~ 178 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.52 E-value=0.032 Score=55.50 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 602 (798)
.|...+....+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....|..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556778888888887776532111 0245567788888888888888888777 2222 245666677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
..+...|+.+.|...++++++..|+...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7888899999999999999999998753
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.8 Score=47.92 Aligned_cols=330 Identities=14% Similarity=0.096 Sum_probs=159.6
Q ss_pred hCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCCC-
Q 003746 124 NNNVGVDNYTYPL-----LAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---LSAARKLFDESPV- 194 (798)
Q Consensus 124 ~~g~~~~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~- 194 (798)
+-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++.....-+.+..+ .+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4455555554443 3444555666777777766653322122 5677777777776632 2223333333333
Q ss_pred -CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCccc------HHHHHH
Q 003746 195 -LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS------WSALIS 267 (798)
Q Consensus 195 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~ 267 (798)
.+-++|..+..-..+.|+.+-|..+++.=...... +-.+.+.++.+.|..=--+-..+|.+. ++.+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q-----V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~ 578 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ-----VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR 578 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch-----hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 45567777777777788888887777654332111 111222233333332222222222211 111111
Q ss_pred H--HHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHH-----HhCCccchhHHHHHHHHHH
Q 003746 268 C--YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV-----KIGIECYINLQNALIHMYS 340 (798)
Q Consensus 268 ~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-----~~g~~~~~~~~~~li~~y~ 340 (798)
+ +.-..+...|..+|.+..+.. |..+ +-..+....+......++-+.. ..|..|+ .....+.++
T Consensus 579 s~l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a 649 (829)
T KOG2280|consen 579 SSLFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFA 649 (829)
T ss_pred HHHHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHh
Confidence 1 111123444555555543321 1111 1111112222222222221110 0122222 222333333
Q ss_pred hCCCHH-------HHHHHH---Hh-----cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 003746 341 SCGEIT-------TAEKLF---DA-----GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD 405 (798)
Q Consensus 341 ~~g~~~-------~A~~~~---~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 405 (798)
+..... +-.+++ +. +..-.-.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 332211 111111 11 222233344455555567788888888888777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHH
Q 003746 406 QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEV 483 (798)
Q Consensus 406 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 483 (798)
++++-+++-+.+. .+.-|.....+|.+.|+.++|..++..... +.-.+.+|.++|++.+|.++
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 7777666554432 245566677777777777777776544311 11466777777777777665
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.52 E-value=0.017 Score=53.79 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CcHHHHH
Q 003746 489 EKGVSSWNALIIGFAMN-----GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM----------------GLVDEGH 547 (798)
Q Consensus 489 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 547 (798)
.++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555555555555433 55555666677777777777777777777765331 2445677
Q ss_pred HHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 548 RHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
+++++| +.+|+-||.+++..+++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 788888 557888888888888888877664
No 211
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.49 E-value=0.074 Score=56.25 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc--CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC----CCcch
Q 003746 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN--GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE----KGVSS 494 (798)
Q Consensus 421 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 494 (798)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777777777777777777776666654 2222233445777777777777777777765443 45667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777766666777776666666554
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.18 Score=48.26 Aligned_cols=169 Identities=9% Similarity=-0.018 Sum_probs=108.8
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCCC--C--------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEEK--G--------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 533 (798)
++.|...|.-...+++-...|+.-..+ . ...-+.++..+.-+|.+.-.+.++++.++...+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444444444444433221 1 224466777777788888889999999886655566667777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCC----cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHH
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRL----EPNSKHYGCMVDLLGRAGMLKEAEELIESMPM-SP-DVATWGALLGACKK 607 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~ 607 (798)
.+.-.+.|+.+.|..+|++..+..+. .-+.-+...+...|.-++++.+|...+++.+. .| |....|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 78888899999999999977654322 22222333344456667788888888877732 22 44555554445556
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchH
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
-|+...|++..+.+++..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 6888888888888888888755443
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=1.3 Score=45.56 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 003746 362 SWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441 (798)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 441 (798)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-.++-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344445555777777888887777777777888888888888888776654321 2244777788888888888
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 442 LDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
..+|..+...+ + +..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 77777666551 1 245778899999999998763
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.049 Score=55.66 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.++..|..+|.+.+++..|++...+.++++|+|.-..+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778888899999999999999999999999999999999999999999999999999863
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.29 E-value=1.2 Score=43.28 Aligned_cols=194 Identities=22% Similarity=0.222 Sum_probs=130.2
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEE-----KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
..........+...+.+..+...+..... .....+..+...+...+++.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45555666667777777777777666542 2344566666677777778888888887776433331 12222222
Q ss_pred -HHHhcCcHHHHHHHHHHHHHhCCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 003746 536 -ACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD--VATWGALLGACKK 607 (798)
Q Consensus 536 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~ 607 (798)
.+...|+++++...+.+... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888888743 223 2333444444566778888888888776 33333 5677788888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.++.+.|...+.++++..|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888999998888888875556666777777667788888887776653
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.081 Score=52.83 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=111.0
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHh-------hcCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH---H
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFH-------GTEEKG--VSSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNE---I 528 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~ 528 (798)
.++..++++.++.|.+++++..-- +..+.+ ..+|-.+..++-+..++.+++.+-+.-.. .|..|.. .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 344455555666666555543211 111111 23455555555555555555554443322 2333321 1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--cC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH--
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRL--EP--NSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPDV-- 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-- 595 (798)
...++..+....+.++++++.|+.+.+-..- .| ...+|..|...|++..++++|.-+..+. +++.-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 2333455666667788888888887653211 12 2467888888999888888876665443 322111
Q ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCC----cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 596 ---ATWGALLGACKKHGDHEMGERVGRKLVEL--QPDH----DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 596 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+...|..+++..|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 23344567888889888888888888653 3333 23344688899999988887766544
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.0076 Score=47.56 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVEL----QPD---HDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777888888888888888877753 222 244667788888888888888888877643
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.19 E-value=0.048 Score=50.95 Aligned_cols=98 Identities=11% Similarity=0.179 Sum_probs=71.4
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc------------
Q 003746 379 ARALFDAM--IEKDVVSWSTMISGYAQH-----DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL------------ 439 (798)
Q Consensus 379 A~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------ 439 (798)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 455677777777777654 55666666777888888888888888888776542
Q ss_pred ----cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 440 ----VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 440 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345678888889889999999998888888877664
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.19 E-value=0.065 Score=56.23 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+|.++.++. ...| |+.....+..+....++++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444443 2222 4555555555555555566666666666666666666666666666666666666666665443
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.19 E-value=0.098 Score=47.21 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=72.5
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEP--NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
....|+.+.+...++++..-+.-++ +... ..-.....+.+++. -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677778877777765432211 2111 12222333333332 123566677888899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...+++++..+|-+...+..+..+|...|+..+|.++|+.+.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988853
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.17 E-value=0.31 Score=49.62 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=48.5
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcC-------CC--CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CCHHH
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTE-------EK--GVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVT-PNEIT 529 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t 529 (798)
|..|.+.|.-.|+++.|+..-+.-. .+ .-..+..+..++.-.|+++.|.+.|+.-.. .|-+ ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4445555555566666554433211 00 123556667777777788888777776432 2211 11224
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
..+|..+|.-...+++|+.++.+-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777776553
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.15 E-value=2 Score=44.61 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH-HHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY-GCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 569 (798)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|.++|+.-+..+ ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3467777777777777888999999999888 5667777888887555 578888899998766542 454333 456
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 570 VDLLGRAGMLKEAEELIESM--PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.+.+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.++.|.....-
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~e 539 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHH
Confidence 67778899999999999865 22333 45788888888888999988888888888888764433
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=3.3 Score=46.67 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=93.1
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 003746 105 AYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSA 184 (798)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (798)
-+.+.|++++|..-|-+-... +.| ..+++-+.....+..-..+++.+.+.|+ .+..--+.|++.|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 345678888888877665521 122 2345555555566666778888888885 444556788999999999998
Q ss_pred HHHHHccCCCCCc-chHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC
Q 003746 185 ARKLFDESPVLDL-VSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 185 A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 257 (798)
-.+..+....... .-....+..+-+.+-.++|..+-.+... +..+...+ +-..|++++|.+.+..++-+
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 8888776662211 1345566677777777777776655544 33333333 34568899999999888754
No 224
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.07 E-value=1.5 Score=43.29 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-ATL---VSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
+-.....+.+.|++++|++.|+++... -|+. ... ..+..++.+.++++.|...++..++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444555667777777777776653 2222 111 22334455556666666666655554
No 225
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=2.9 Score=46.75 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCC-----chHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 003746 204 LAGYVNADNVEEAKFIYNKMPERN-----IIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278 (798)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (798)
|.-+.+.+.+++|++.-+.....- ..++...|+.+.-.|++++|-.+.-.|...+..-|-.-+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 444667777777777776665432 245667777777777888887777777777777777766666666665543
Q ss_pred H
Q 003746 279 L 279 (798)
Q Consensus 279 ~ 279 (798)
.
T Consensus 443 a 443 (846)
T KOG2066|consen 443 A 443 (846)
T ss_pred h
Confidence 3
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.0088 Score=47.19 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-------P-MSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
.|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444455555555554444443 1 1122 446677777777777777777777777653
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.99 E-value=3.1 Score=45.22 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=124.3
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 535 (798)
++..+|..-++--.+.|+.+.+.-.|++..-+ =...|--.+.-....|+.+-|-.++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888999999999998877643 233455555555555888888877776655433333333222233
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAE---ELIESM-PMSPDVATWGALLG-----AC 605 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~ 605 (798)
-+...|+.+.|..+++.+.++ . |+ ...-.--+.+..+.|..+.+. +++... +.+-+..+...+.. .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456788999999999999875 3 65 444444567778899999888 555544 22233333333332 23
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
...++.+.|..++.++.+..|++...|..+.++....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999998888876665
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.08 Score=44.70 Aligned_cols=90 Identities=21% Similarity=0.114 Sum_probs=72.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----chHHHHHHHHHhcCC
Q 003746 571 DLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD----GFHVLLSNIHASKGR 644 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 644 (798)
-+++..|+++.|++.|.+. .+- .....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788899999888876 333 3678899999999999999999999999998754332 347778889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 003746 645 WDDVLEVRGMMVRRGV 660 (798)
Q Consensus 645 ~~~a~~~~~~m~~~~~ 660 (798)
-++|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887664
No 229
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=1.7 Score=44.81 Aligned_cols=148 Identities=14% Similarity=0.012 Sum_probs=90.6
Q ss_pred HhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh--hHHhcCCHHHHHHHHhhcCCCCcc---------------hHHHH
Q 003746 436 CTHLVALDQGKWIHAYIRKNGLKINSILGTTLID--MYMKLGCVDNALEVFHGTEEKGVS---------------SWNAL 498 (798)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 498 (798)
+...++.++|.++-..+++..- ...+...++ ++--.++.+.|...|++...-|+. .|.-=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3566777777777766666531 112222222 233456777788777776643321 23333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKS---GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG 574 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 574 (798)
..-..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 44457788888888888888762 2334444566666677788888888887777643 4443 333333344555
Q ss_pred hcCCHHHHHHHHHhC
Q 003746 575 RAGMLKEAEELIESM 589 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~ 589 (798)
-.+++++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667888888888776
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=95.77 E-value=0.37 Score=50.77 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHH---------hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh
Q 003746 508 ADKSLEMFSEMKK-SGVTPNEI-TFVGVLGACR---------HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR 575 (798)
Q Consensus 508 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 575 (798)
.+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.+.-++.++ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4568888888872 23667654 3333332221 12345677777777765 455 57777778888888
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH--HHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL--LSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~ 651 (798)
.|+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-+. ..++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 89999999999998 56675 6678888888889999999999999999999986554443 33355554 46677766
Q ss_pred HH
Q 003746 652 RG 653 (798)
Q Consensus 652 ~~ 653 (798)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 54
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.71 E-value=1.4 Score=42.22 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=25.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRP--DEATLVSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
...+.+.|++++|++.|+++...-... -......+..++.+.|+.+.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566666666666555431110 1122223344444555555555555554443
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.69 E-value=0.98 Score=43.34 Aligned_cols=142 Identities=8% Similarity=0.110 Sum_probs=74.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN--EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 574 (798)
.....+...|++++|++.|+++...-.... ......+..++.+.|++++|...+++.++.+.-.|.. -+.....+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344556667777777777777776421111 1244555666777777777777777776654333321 1111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch-----------------HHHHHH
Q 003746 575 RAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF-----------------HVLLSN 637 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 637 (798)
.-..... .+ ......+....|...++.+++..|+++-. -..++.
T Consensus 89 ~~~~~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 00122234556777777777777776433 235678
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003746 638 IHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999988764
No 233
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.69 E-value=2.7 Score=49.27 Aligned_cols=129 Identities=19% Similarity=0.309 Sum_probs=72.1
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHH
Q 003746 242 GNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAV 321 (798)
Q Consensus 242 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 321 (798)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 56666666665554 334555555556677777777776 4666666555555432 111
Q ss_pred HhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHH--HHHHH
Q 003746 322 KIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK-DVVS--WSTMI 398 (798)
Q Consensus 322 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~~~li 398 (798)
+. .-++--.-+|.++|+.++|.+.++ .+|++.+|..+-.++... |... -..|+
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEGKDELVILAEELV 1006 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 11 112223446777777777765544 667777777777666543 3222 24555
Q ss_pred HHHHhCCChHHHHHHHHHH
Q 003746 399 SGYAQHDQFSETLSLFMEM 417 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m 417 (798)
.-+...+++-+|-++..+.
T Consensus 1007 s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHcccchhHHHHHHHH
Confidence 6666666666666555544
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.59 E-value=3.6 Score=48.33 Aligned_cols=156 Identities=16% Similarity=0.195 Sum_probs=92.5
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+. .+.+
T Consensus 895 ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~~ 951 (1265)
T KOG1920|consen 895 RYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLRE 951 (1265)
T ss_pred HHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHHH
Confidence 4555555554443 223333444444566666666664 5777777666655542 1111
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT--FVG 532 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ 532 (798)
.. .++-..-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... --.
T Consensus 952 ~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 952 EL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred hc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11 122334468888998888765 4567888888888777643 122221 245
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|..-+...++.-+|-++..+... . +.--+..|++...+++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66667777887777777766533 1 233566777888888888876665
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=5.3 Score=43.96 Aligned_cols=214 Identities=12% Similarity=0.149 Sum_probs=106.5
Q ss_pred ChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHh----------hcCCHHHHHH
Q 003746 181 DLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFG----------RKGNVAEACR 249 (798)
Q Consensus 181 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~----------~~g~~~~A~~ 249 (798)
.+++|.+..+.-| .+..|..+.....+.-.++-|...|-+... +.+..-..|-.... --|++++|++
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 3566777666544 455687777776666666667666655432 11111111111111 1255555555
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccch
Q 003746 250 LFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYI 329 (798)
Q Consensus 250 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 329 (798)
++-.|.++|. -|..+.+.|++-...++++.- |- ++-+ +.-.
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~-----------------d~dD--------------~~~e 796 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GS-----------------DDDD--------------EGKE 796 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CC-----------------Ccch--------------HHHH
Confidence 5555554442 233334444444433333210 00 0000 0012
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Q 003746 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409 (798)
Q Consensus 330 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 409 (798)
..++.+.+.++....+++|.+.+...... ...+.++.+..++++-+.+-..+++. ....-.|...+...|.-++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHH
Confidence 34566677777666777777766543221 12344455555555555555555443 2334456667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHH
Q 003746 410 TLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450 (798)
Q Consensus 410 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 450 (798)
|.+.|-+- + .| ...+..|...+++.+|.++-+
T Consensus 871 AV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 871 AVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 77666432 1 12 234556666666666655443
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.41 E-value=1.4 Score=37.65 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
-.|..++..++..+.... .+..-++-++--....-+=+-..+.++.+-+-+.+ ..+|.+....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356666677777666542 12333444443333333333344444444222222 2344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 584 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
..+-.++ .+......-+.....+|+-+.-.+++..+.+-+..+|.+.+-++++|.+.|...++.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444442 233344556677888899999999999988766667889999999999999999999999999998874
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.33 E-value=0.15 Score=44.19 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc-----------------CCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-----------------PNSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-----------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
|..++..++.++++.|+++....+.+.. +|+. |+..+..+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3456666777777777777766666543 3443 4444444444444444444444444443
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.33 E-value=0.38 Score=50.72 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 584 (798)
..+.+.-+++-++..+ +.||-.+-..++ +-....-+.++.+++++.++... ..+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchh-hhhhcccc---hhh
Confidence 4445555566666665 566654433333 33344567888888888765310 000000 00001111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 003746 585 LIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVK 662 (798)
Q Consensus 585 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 662 (798)
.+.+-...|-..+=..|..++++.|+.++|++.++++++..|. +......|...+...+++.|+..++.+--+....|
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222334456777778889999999999999877664 45567788889999999999998888765433333
Q ss_pred CCccceE--EECCEEEEEEeCCCCCcCh-------HHHHHHHHHHHHHHHHcCCCCCCcc
Q 003746 663 IPGCSMI--EANGIIHEFLAGDRTHPQI-------NEIDNMLDEMAKKLKLEGYAPDTLE 713 (798)
Q Consensus 663 ~~~~s~i--~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~~~~~g~~~d~~~ 713 (798)
....+|. .++- =..+|+..|+. ......++-+.+-++..+++|+-..
T Consensus 329 SAti~YTaALLka----Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 329 SATICYTAALLKA----RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hHHHHHHHHHHHH----HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 2222221 1110 01222222221 1122345566666777788876543
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.19 Score=51.47 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=95.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 578 (798)
...|.+.|++..|...|++.... -+ +...-+.++..... ..-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876541 00 01111112222111 1123456678888899999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHHH
Q 003746 579 LKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV-LEVRGMM 655 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 655 (798)
+.+|++.-++. ..+ +|.-...-=..+|...|+++.|+..|+++++++|+|-.+..-|..+-.+..+.++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 46777777788999999999999999999999999988888887666665555544 6778888
Q ss_pred Hh
Q 003746 656 VR 657 (798)
Q Consensus 656 ~~ 657 (798)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.18 E-value=2.1 Score=43.23 Aligned_cols=189 Identities=16% Similarity=0.141 Sum_probs=101.5
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHH--
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVTPNEITF-- 530 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~-- 530 (798)
++..++.-.+.++++++.|+...+ + ....+-.|.+.|.+..++++|+-+..+..+ .++.--..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355555566667777777765432 1 134677777778888888877766655433 2222111122
Q ss_pred ---HHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C----C--C-CCH
Q 003746 531 ---VGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P----M--S-PDV 595 (798)
Q Consensus 531 ---~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~--~-p~~ 595 (798)
..+.-++...|.+..|.+.-++..+- .|-.| ......++.|.|-..|+.|.|..-++.. + . + -..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22334566677777777777766442 23223 1444567888898899888887777654 1 1 0 012
Q ss_pred HHHHHHHHHHHHcC-----ChhHHHHHHHHHHhcC----CCC--cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 596 ATWGALLGACKKHG-----DHEMGERVGRKLVELQ----PDH--DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 596 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~----p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+...+........ .--.|+++-++++++. -.. -..+..++.+|...|.-++-..-+..
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 22222222222111 1123555555555432 111 12345678888888877665544433
No 241
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.56 Score=46.38 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG---MLKEAEELIESM-PMSP-DVATWG 599 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~ 599 (798)
|...|..|..+|...|+.+.|..-|....+ +.| +...+..+...+.... .-.++.++|+++ ..+| |..+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 344677777777777777777777777754 344 3555666665544322 345677777777 4455 566677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.|...+...|++.+|...++.|++..|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7778888899999999999999987776543
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.04 E-value=0.29 Score=42.90 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCC
Q 003746 573 LGRAGMLKEAEELIESM----PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF---HVLLSNIHASKGR 644 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 644 (798)
..+.|++++|.+.|+.+ |..| ...+--.|+.++.+.+++++|...+++.+++.|.++.+ +...+-++.....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 44567777777777766 2222 23445567788888888888888888888888876543 3333333444333
Q ss_pred ---------------hhHHHHHHHHHHhC
Q 003746 645 ---------------WDDVLEVRGMMVRR 658 (798)
Q Consensus 645 ---------------~~~a~~~~~~m~~~ 658 (798)
..+|..-|+.++++
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 45666666666543
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.96 E-value=0.11 Score=54.62 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDV----ATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666777777777777777777664 555553 34777777777777777777777777776
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=0.19 Score=49.00 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|..++...|+++.|...|..+.+-.|+. +..+.-|+.+..+.|+.++|..+++.+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4555555555555555555555443332 33445555555555555555555555544
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.83 E-value=4.1 Score=39.38 Aligned_cols=195 Identities=17% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC---cchHHHHHH-HHH
Q 003746 429 LVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG---VSSWNALII-GFA 503 (798)
Q Consensus 429 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~-~~~ 503 (798)
.......+...+.+..+...+...... ........+..+...+...+.+..+.+.+......+ ...+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444444331 223334444455555666666777777776655422 122333333 688
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC
Q 003746 504 MNGLADKSLEMFSEMKKSGVTP----NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 578 (798)
..|+.++|...|.+... ..| ....+......+...++.+++...+....+. ... ....+..+...+...|+
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 88999999999988855 333 2234444444567788999999999988763 223 36778888888999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 579 LKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+++|...+... ...|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998877 33444 555666666666777899999999999998887
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.82 E-value=0.066 Score=33.90 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888888999999999999999988875
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.82 E-value=0.049 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888889999999999999999999998863
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.70 E-value=1.2 Score=48.19 Aligned_cols=129 Identities=17% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 003746 200 WNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEAL 279 (798)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (798)
.+.++.-+-+.|..+.|+++-..- ..-.++..++|+++.|.++.++.. +...|..|.....++|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 455555555566666665553321 223445567788888888887766 5668999999999999999999
Q ss_pred HHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHH
Q 003746 280 VLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFD 353 (798)
Q Consensus 280 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 353 (798)
+.|++... |..++-.+...|+.+.-.++.......|- +|.....+.-.|++++..+++.
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99988754 55565566666777766666666665542 2333334443455555544443
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=4.5 Score=38.76 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred HHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC--cchHHHHHHHHHHcCChHH
Q 003746 433 ISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG--VSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 433 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 510 (798)
-.++-...+++++...+....+. .+.+...+ -....++.|.-+.+++.+-+ +..++--...|..+|.++.
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34555666677776655554432 11111111 11233455555555555433 3356666777888888887
Q ss_pred HHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----CcCCcchHHHHHHHHHhcCCHHHHHH
Q 003746 511 SLEMFSEMKK--SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR----LEPNSKHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 511 A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~ 584 (798)
|-..+++.-+ .++.|+ +|++++++...... ..--...|......|.+..+++||-.
T Consensus 110 AAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7776666443 224444 44444444322110 01113445556677788888888877
Q ss_pred HHHhCC-----C--CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHh----cCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 585 LIESMP-----M--SPDV-ATWGALLGACKKHGDHEMGERVGRKLVE----LQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 585 ~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
.|.+-. . -|+. ..+-+.+-.+.-..++..|++.++..-+ ..|++..+...|...| ..|+.|++.++.
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 766542 1 1222 2344445555566788888888888654 3566666677776664 568888877665
Q ss_pred H
Q 003746 653 G 653 (798)
Q Consensus 653 ~ 653 (798)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.58 E-value=4.5 Score=39.28 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGV-TP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
.|-.=+..-.+.|++++|.+.|+.+..... .| ...+...++.++-+.++.++|....++.++.++-.|++. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 333344445566666666666666665311 11 123455555566666666666666666666555444432 222222
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc-----------------hHH
Q 003746 572 LLGRAGMLKEAEELIESMP-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-----------------FHV 633 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~ 633 (798)
++. .|...+ ...|. .-...|...|+++++..|+..- .-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 222 111111 00111 1123445555556666665432 234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+++.|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6788899999999999999999875
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.44 E-value=1.1 Score=39.45 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPN---EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 577 (798)
...+.|++++|++.|+.+...= +.. ...-..++.++.+.|++++|...+++.++-+.-.|+ ..|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 3445566666666666655531 111 123444555555666666666666665543222222 23333333333222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 578 MLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 578 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..+.++.-+- +.+.|. +....|...|+++++..|++.
T Consensus 97 ~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 2111111111 111111 235688888999999999874
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.42 E-value=0.11 Score=45.05 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=65.4
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
..++..++-++++.|+++....+++..-.-|+.. -...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666777777777777777766543322110 000000 112345789999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL 572 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 572 (798)
|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999989877777777776653
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=0.37 Score=46.97 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 602 (798)
.|...+. +.+.|++.+|..-|...++.|.-.+ ....+-.|...+...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3355678888888888777542221 2444556888888888888888887776 3333 245666777
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.+....|+.++|...++++.+..|+.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77888889999999999999888887653
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=1.1 Score=44.57 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--H--HHHHhcCcHHHHH
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV--L--GACRHMGLVDEGH 547 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~a~ 547 (798)
|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... -.||...|..+ + -++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 24444554445555555555555555544432 12333211111 1 1223444555555
Q ss_pred HHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 548 RHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 548 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+.-++..+ +.| |.-.-.++...+...|+.+++.++..+-
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44444432 222 2223333444444455555555554443
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.3 Score=44.77 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 571 DLLGRAGMLKEAEELIESM-P-MSP-----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
+-+.+.|++++|..-|..+ . .++ ..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4456778888888777665 1 111 23345555667788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 003746 644 RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 644 ~~~~a~~~~~~m~~~~~ 660 (798)
++++|++-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999987544
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.15 E-value=2.8 Score=37.26 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHH
Q 003746 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215 (798)
Q Consensus 136 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 215 (798)
.++..+...+........++.+++.+ ..+....|.++..|++.+. ......+.. ..+......++..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444444555555555555554 3455566666666665532 333343431 2233444445555666666666
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhhc-CCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 003746 216 AKFIYNKMPERNIIASNSMIVLFGRK-GNVAEACRLFKEMPKKDLVSWSALISCYE 270 (798)
Q Consensus 216 A~~~~~~m~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 270 (798)
+.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 88 ~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 88 AVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 6666555422 11122222222 5566666666552 24445666555544
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=2.5 Score=41.79 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=85.7
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA---LLGACKKHGDH 611 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 611 (798)
.....|+..++...|+..... .| +...--.|+..|...|+.++|..++..+|.+-...-|.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888999988888663 33 466777889999999999999999999975544444433 22333333333
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+.. .+++-+..+|+|...-+.|+..|...|+.++|.+.+=.+..+
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3322 234445679999999999999999999999999987666544
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.12 E-value=0.29 Score=47.29 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=76.8
Q ss_pred HHHHHhhcC--CCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 003746 480 ALEVFHGTE--EKGVSSWNALIIGFAMN-----GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG----------- 541 (798)
Q Consensus 480 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 541 (798)
....|.... ++|-.+|-+++..+..+ +..+--...++.|.+.|+.-|..+|..||..+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 56777888888887654 455666667888999999999999999998765432
Q ss_pred -----cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCH
Q 003746 542 -----LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 542 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 579 (798)
+-+=++.++++| +..|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 233478899999 5689999999999999999998864
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.75 E-value=2.8 Score=46.06 Aligned_cols=115 Identities=18% Similarity=0.067 Sum_probs=83.9
Q ss_pred cCcHHHHHHHHHHHHHhCCCcCCcchHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCChh
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEPNSKHYGC-MVDLLGRAGMLKEAEELIESMPM-S-----PDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 612 (798)
....+.+.++++.+.++ -|+...|.. -...+...|++++|.+.|++.-. + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45788899999998764 366555543 34667789999999999997521 1 13345566777888899999
Q ss_pred HHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCCh-------hHHHHHHHHHHh
Q 003746 613 MGERVGRKLVELQPDHDGFHV-LLSNIHASKGRW-------DDVLEVRGMMVR 657 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 657 (798)
+|.+.+.++.+...-...+|. ..+-.|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999987665444444 556667788988 888888877754
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.45 E-value=2.4 Score=45.07 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM--SPD--VATWGALLGACK 606 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~~~~ 606 (798)
..+..++.+.|+.+||.+.|+++++++.......+...|+..|...+.+.++..++.+... -|. ...|+..+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456667788999999999999987643222355667889999999999999999888731 133 334555444444
Q ss_pred HcCCh---------------hHHHHHHHHHHhcCCCCcch
Q 003746 607 KHGDH---------------EMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 607 ~~g~~---------------~~A~~~~~~~~~~~p~~~~~ 631 (798)
..++. ..|.++..++++.+|..+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 33331 23567889999988876654
No 261
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.43 E-value=0.043 Score=49.38 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHH
Q 003746 136 LLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEE 215 (798)
Q Consensus 136 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 215 (798)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777788888888777667789999999999999988888888874443 444567777788888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 003746 216 AKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274 (798)
Q Consensus 216 A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 274 (798)
|.-++.++...+.. +..+.+.++++.|.+.+.+. .|...|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 88777665321110 00122223333444333332 256677777777766654
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=18 Score=41.13 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcC
Q 003746 569 MVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE-LQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 643 (798)
++..+.+..+.+++..+.+..+.. |+..|-.+++-+.+.+..+.-.+...+.++ +.-++...-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 445566677778888887777533 777888888888888876666665555553 22222222233445555554
No 263
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.18 E-value=0.67 Score=41.69 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCcCCcc
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ----EHRLEPNSK 564 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 564 (798)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+++.+ +.|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344555555666666666666666531 22344566666666666666666666655432 345555543
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=6.5 Score=39.00 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCC
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGM 578 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 578 (798)
......|+..+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhc
Confidence 34456677777777777776642 112334555667777788888888777765321 1111 1112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChh-HHHHHHHH
Q 003746 579 LKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL--QPDHDGFHVLLSNIHASKGRWD-DVLEVRGM 654 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~-~a~~~~~~ 654 (798)
..+..++-.+..-.| |...-..+...+...|+.+.|.+.+-.++.. .-++...--.|..++...|.-+ .+.+++++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555553345 5666667777777888888887777666653 3345556666666666666333 34445554
Q ss_pred H
Q 003746 655 M 655 (798)
Q Consensus 655 m 655 (798)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.87 E-value=1.5 Score=47.27 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=82.9
Q ss_pred HHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCH
Q 003746 501 GFAMNGLADKSLEMFSEMK-KSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 579 (798)
.....|+++++.++.+.-. -..+ | ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677777666554111 1111 1 33466677777788888888876544322 34566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 580 KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 580 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.|.++.++. ++...|..|......+|+++.|++.+++.- -+..|.-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988887765 477789999999999999999888888863 24556667888888877777766666555
Q ss_pred C
Q 003746 660 V 660 (798)
Q Consensus 660 ~ 660 (798)
-
T Consensus 404 ~ 404 (443)
T PF04053_consen 404 D 404 (443)
T ss_dssp -
T ss_pred C
Confidence 3
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.81 E-value=0.94 Score=43.99 Aligned_cols=111 Identities=8% Similarity=0.116 Sum_probs=80.7
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----------
Q 003746 378 KARALFDAMI--EKDVVSWSTMISGYAQH-----DQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV---------- 440 (798)
Q Consensus 378 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------- 440 (798)
..++.|...+ ++|-.+|-+++..|... +..+=.-..++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56777777777776554 456666667788999999999999999998765532
Q ss_pred ------chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH-HHHHHHHhhcC
Q 003746 441 ------ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV-DNALEVFHGTE 488 (798)
Q Consensus 441 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 488 (798)
.-+-+..++++|...|+.||-.+-..|++.+++.+.. .+..++.--|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2344778899999999999999999999999988764 33334433333
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=1.1 Score=44.57 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH----HHHhcCCH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD----LLGRAGML 579 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~ 579 (798)
.+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...+++++.. ..|+...|..+-. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999875 5566677777778999999999999999988753 3566655554443 44589999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 003746 580 KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH----DGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
++|++.-++. .+.| |...-.++...+...|++.++.+...+-.....+. .-.|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 56666788888889999999999887765543321 1123345556777899999999997
Q ss_pred HHHhCCCccCCcc
Q 003746 654 MMVRRGVVKIPGC 666 (798)
Q Consensus 654 ~m~~~~~~~~~~~ 666 (798)
.=.-....|..++
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 7654445555443
No 268
>PRK15331 chaperone protein SicA; Provisional
Probab=92.44 E-value=4.1 Score=36.78 Aligned_cols=84 Identities=10% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 580 (798)
+.+.|++++|..+|+-+... .|... -+..|..+|-..+++++|...|.....- . .-|+..+--....|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34455555555555555442 22222 2333444444455666666655554321 1 112222223455555566666
Q ss_pred HHHHHHHhC
Q 003746 581 EAEELIESM 589 (798)
Q Consensus 581 ~A~~~~~~~ 589 (798)
.|+..|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666655554
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.33 E-value=12 Score=36.54 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=105.2
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 003746 471 YMKLGCVDNALEVFHGTEEKGV------SSWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACRH---M 540 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~---~ 540 (798)
-.+.|++++|.+.|+.+..+.+ .+--.++-++-+.+++++|+...++....- -.|| +.|..-|.+.+. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 3467999999999998886532 244556777889999999999999988742 3333 344444444332 1
Q ss_pred ----Cc---HHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCh
Q 003746 541 ----GL---VDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW--GALLGACKKHGDH 611 (798)
Q Consensus 541 ----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~ 611 (798)
.+ ..+|..-|+..+.++ |+.. --.+|..-+... .|.... ..+..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKL---NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCh
Confidence 12 233444444444432 3321 112222222211 011111 2355678889999
Q ss_pred hHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 612 EMGERVGRKLVELQPDHDG---FHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
..|..-++.+++.-|+... .+..+..+|...|..++|.+.-+-+...-
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 9999999999988776544 45567788999999999999888776543
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.07 E-value=3.4 Score=45.38 Aligned_cols=128 Identities=20% Similarity=0.145 Sum_probs=82.6
Q ss_pred hHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchH
Q 003746 494 SWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVL-GACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHY 566 (798)
Q Consensus 494 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~ 566 (798)
.|..++..+.. ....+.|.++++++... -|+..-|...- ..+...|++++|.+.|++......--|. ...+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444433 35677888999988873 78877665544 4566789999999999976531111122 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHH-HHcCCh-------hHHHHHHHHHHh
Q 003746 567 GCMVDLLGRAGMLKEAEELIESMP-MS-PDVATWGALLGAC-KKHGDH-------EMGERVGRKLVE 623 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~ 623 (798)
--+...+.-.+++++|.+.|.++. .. .+..+|..+..+| ...|+. ++|.++++++-.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456667888999999999999883 22 2344555555555 456777 777777777654
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.96 E-value=8.5 Score=34.14 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=18.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRH 539 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 539 (798)
.++..+...+.......+++.+...+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444431 233344444444443
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.89 E-value=0.26 Score=31.13 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888888888888888888888874
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.55 E-value=20 Score=37.66 Aligned_cols=148 Identities=8% Similarity=0.002 Sum_probs=81.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCcCCcchH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP---NEITFVGVLGACRHMGLVDEGHRHFNSMIQE-HRLEPNSKHY 566 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 566 (798)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++..++. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34578888899999999999999988887743222 2233444455566778888998888887662 1111111111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 567 GCMVDLLGRAGMLKEAEEL-IESMPMSPDVATWGALLGACKKH------GDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
..+...+.. ..+..... ........-..++..+..-+... ++.+.+...|+++.++.|+....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7888999999999999998887777777654
Q ss_pred H
Q 003746 640 A 640 (798)
Q Consensus 640 ~ 640 (798)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.47 E-value=9.1 Score=36.01 Aligned_cols=161 Identities=18% Similarity=0.125 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
...+|-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|++.-|.+-|...-+ -.|+-..-...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 346777777778888888888888887774 3332 2332223334456777777765554433 233321111111
Q ss_pred HHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhc
Q 003746 571 DLLGRAGMLKEAEELI-ESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLSNIHASK 642 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 642 (798)
-.-.+.-+..+|..-+ ++.. ..|..-|...+..+.- |++.+ +.+++++.+-..++ ..+|..|+.-|...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1222344566666544 3332 3455566655554433 22111 12333333322222 34688899999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 003746 643 GRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 643 g~~~~a~~~~~~m~~~~~ 660 (798)
|..++|..+|+......+
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999999887654
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.17 E-value=13 Score=37.76 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--c----cchhHHHHHHHHHHHcCC---CCcHHHHhHHHhhHHhcCCH
Q 003746 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTH--L----VALDQGKWIHAYIRKNGL---KINSILGTTLIDMYMKLGCV 477 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 477 (798)
+++.+.+++.|.+.|++-+..++.+.+..... . .....+..+|+.|.+... .++...+..|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888887777664433322 1 123345556666655421 1222222222211 11111
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCc--HHHHHHHHHHH
Q 003746 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRH-MGL--VDEGHRHFNSM 553 (798)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~~ 553 (798)
+. -.+++...|+.+.+.|+..+.. .+.+-+-++.. ... +.++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245667788888878766654 34333333332 222 44677788888
Q ss_pred HHhCCCcCCcchHHHHHHHH
Q 003746 554 IQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 554 ~~~~~~~p~~~~~~~l~~~~ 573 (798)
.+ .|+++...+|..++-+-
T Consensus 209 ~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HH-cCCccccccccHHHHHH
Confidence 55 58888888887665443
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=15 Score=35.28 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003746 99 FNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAV 178 (798)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (798)
|-.-..+|-...+++.|...+.+..+ +.+-|...|.. .+ ..+.|..+...+.+. +.-+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-AK------ayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-AK------AYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-HH------HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33334455566667776666555542 12222222221 11 233444444444432 2334456666777777
Q ss_pred cCChHHHHHHHcc
Q 003746 179 CGDLSAARKLFDE 191 (798)
Q Consensus 179 ~g~~~~A~~~f~~ 191 (798)
+|..+.|-..+++
T Consensus 104 ~GspdtAAmaleK 116 (308)
T KOG1585|consen 104 CGSPDTAAMALEK 116 (308)
T ss_pred hCCcchHHHHHHH
Confidence 7777766655554
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.98 E-value=3.9 Score=34.92 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGML 579 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 579 (798)
.+..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|+.-+++.++-.|-... ...|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44555555666666555542 1123345555566666666666666655555543232211 11222233345555666
Q ss_pred HHHHHHHHhC
Q 003746 580 KEAEELIESM 589 (798)
Q Consensus 580 ~~A~~~~~~~ 589 (798)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 6665555543
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.78 E-value=0.38 Score=30.99 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
|..|...|...|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.47 E-value=11 Score=34.43 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhC--CCHHHHHHHHhhCCCCCchH
Q 003746 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNA--DNVEEAKFIYNKMPERNIIA 230 (798)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~ 230 (798)
....+.+.|++++..++..+++.+.+.|++..-..++.--.-+|.......+-.+... .-..-|++++.++.. .
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~----~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT----A 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----h
Confidence 3344445666777777777777777777776666666554434433222222211111 012233333433321 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 003746 231 SNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF 282 (798)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 282 (798)
+..++..+...|++-+|.++.+....-+.+.-..++.+-.+.++..--..+|
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 2233444445555555555555544334444444555555554443333333
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.50 E-value=0.66 Score=31.49 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+..+...|.+.|++++|.+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555555
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.29 E-value=14 Score=33.25 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMP-MSPDVATWGALLGACKKHGD 610 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~ 610 (798)
++..-.+.++.+++..++..+. -+.|. ..+-..-+..+.+.|++++|..+|+++. ..|....-.+|+..|....+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344456678888888888774 36775 4444455667788999999999998883 23444455667666655444
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 003746 611 HEMGERVGRKLVELQPDH 628 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~ 628 (798)
-..=....+++++..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADP 110 (160)
T ss_pred ChHHHHHHHHHHhcCCCh
Confidence 333444556666666543
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.24 E-value=0.73 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 283
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.82 E-value=33 Score=35.93 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---C----HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 369 GYLKCGSVEKARALFDAMIEK---D----VVSWSTMISGYAQ---HDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
+|....+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.+++.|+..+...+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455777777777777777543 1 1122233445556 688889999888866666677777777665543
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.23 E-value=18 Score=34.65 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=44.0
Q ss_pred hcCcHHHHHHHHHHHHHhC----CCcCCcchHHHHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH--H-
Q 003746 539 HMGLVDEGHRHFNSMIQEH----RLEPNSKHYGCMVDLLGRA-GMLKEAEELIESM-----PMSPDVATWGALLGA--C- 605 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~--~- 605 (798)
+.+++++|.+.++..++-+ .+.--..++-.+.+.|..- .+++.|+..++.. +-+.+...-..++.+ |
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3346666665555443311 0111122333455555543 5566666666655 111222222223322 2
Q ss_pred HHcCChhHHHHHHHHHHhcCCCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
...+++.+|+.+|++.....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 35578888898888887644444
No 285
>PRK09687 putative lyase; Provisional
Probab=88.13 E-value=32 Score=34.83 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 575 (798)
..+.++.+.|+ ++|+..+-.+.. .+|...-...+.++.+.+ ...++...+..+.. .++..+-..-+.++++
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHc
Confidence 34444444443 345555554443 233333333333444332 12344444444432 3455555556666666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 576 AGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 576 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.|+.+-...+++.+. .++ .....+.++...|+. +|...+.++++..||
T Consensus 219 ~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 219 RKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred cCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 666332222333333 122 233455666666663 566666666666663
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.61 E-value=34 Score=34.62 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=14.8
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 003746 603 GACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~ 622 (798)
..+.+.++++.|.+.|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788999998888654
No 287
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.47 E-value=60 Score=37.30 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=70.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH
Q 003746 505 NGLADKSLEMFSEMKKSG-VTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 581 (798)
..+.+.|..++.+..... ..+... ....+.......+..+++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 445678888888775432 333322 223333222332225566666665432 11244445555555568888888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 582 AEELIESMPM--SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 582 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...|..|+. +-...-.-=+..++...|+.++|...|+++.. + .++|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 8888888842 11222223356666668899999988888743 2 24565554
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.36 E-value=3.3 Score=37.15 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=36.3
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345666777777776666777777666666677777777777777777665443
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.28 E-value=1.8 Score=43.27 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD 610 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 610 (798)
..-|.++|.+++|+..|...+. +.| +...+..-..+|.+..++..|+.-.+.. .+.. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4567888999999999987754 566 7888888888899988888777655443 1111 12234444444455678
Q ss_pred hhHHHHHHHHHHhcCCCCcc
Q 003746 611 HEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~ 630 (798)
.++|.+-++.+++++|++..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88888889999999998543
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.17 E-value=26 Score=32.69 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH-----HHHHHHHhcCCHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEITFV--GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-----CMVDLLGRAGMLKEA 582 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 582 (798)
+.....+++....-+....++. .+...+...|++++|...++..+. .|.-..+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555432122222222 233556778888888888877643 23333333 344567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 583 EELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 583 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
+..++...- ++ ...-..-...+...|+.++|+..|+++++..+++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999887631 22 2223334567788899999999999998887554
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.14 E-value=5.3 Score=37.52 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 615 (798)
..|..+-|+-=|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3455566666666554 36786 778888888888999999999999887 55553 222222223344568899999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHH
Q 003746 616 RVGRKLVELQPDHDGFHVLLSNIHASK--GRWDDVLE 650 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~ 650 (798)
+-+-+.-+-+|+|| |..| +.|... =+..+|..
T Consensus 154 ~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~t 187 (297)
T COG4785 154 DDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKT 187 (297)
T ss_pred HHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHH
Confidence 98888888899886 2222 344433 34445543
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=7.1 Score=42.43 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=96.1
Q ss_pred hcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCC
Q 003746 178 VCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 257 (798)
-.|+++.|..++..++.+ .-+.++.-+-+.|..++|+++--.- | .-.....+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D~---d-----~rFelal~lgrl~iA~~la~e~~-- 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTDP---D-----QRFELALKLGRLDIAFDLAVEAN-- 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCCh---h-----hhhhhhhhcCcHHHHHHHHHhhc--
Confidence 457777777777766622 3355666667778888887653221 1 11233456788999988876543
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 337 (798)
+..-|..|..+..+.|++..|.+.|.+.+. |..++-.+...|+-+....+-....+.|.. |.-.-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHH
Confidence 677899999999999999999999988765 566777777777776655555555555532 22223
Q ss_pred HHHhCCCHHHHHHHHH
Q 003746 338 MYSSCGEITTAEKLFD 353 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~ 353 (798)
.|...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4454455555444443
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.81 E-value=4.1 Score=40.61 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKK-----SGVTPNEITFVG 532 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 532 (798)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445677888899999999999999888765 456899999999999999999999988765 567776655444
Q ss_pred HHHH
Q 003746 533 VLGA 536 (798)
Q Consensus 533 ll~a 536 (798)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.70 E-value=23 Score=32.33 Aligned_cols=129 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred HHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhcCCCCHHHHH
Q 003746 318 ALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCG--SVEKARALFDAMIEKDVVSWS 395 (798)
Q Consensus 318 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~ 395 (798)
.-+.+.+++++..++..+++.+.+.|++.....++.-..-+|.......+-.+.... -..-|.+.+.++. ..+.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~ 93 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE 93 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence 334456777777788888888888888888888877766666655544443332211 1234445555443 2455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
.++..+...|++-+|+++.++.... +......++.+..+.++...--.++.....
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777888999999999988775322 222334556666666666555555555544
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.56 E-value=3.8 Score=36.16 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=45.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..++.++++.++..+--+.|+.+..-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888888888888888998888888888888899999999999888876553
No 296
>PRK10941 hypothetical protein; Provisional
Probab=86.28 E-value=6 Score=39.51 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..-++...++-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3567778889999999999999999999999998788889999999999999998888876543
No 297
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.92 E-value=55 Score=35.28 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
..-+++..+.++..+.-...+..+|..-| -+...+..++..+... ..+.--.+++.+.+..+. |+.....|++.|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 44567777778888888888888887754 4566777778777766 556667777777776654 5566667777777
Q ss_pred hcCCHHHHHHHHhhcCCCCc---------chHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCc
Q 003746 473 KLGCVDNALEVFHGTEEKGV---------SSWNALIIGFAMNGLADKSLEMFSEMKK-SGVTPNEITFVGVLGACRHMGL 542 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 542 (798)
+ ++.+.+...|.++..+=+ ..|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 7 777788777776542211 1344443211 1233344444444332 2222223334444445555566
Q ss_pred HHHHHHHHHHHHH
Q 003746 543 VDEGHRHFNSMIQ 555 (798)
Q Consensus 543 ~~~a~~~~~~~~~ 555 (798)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665544
No 298
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.67 E-value=13 Score=41.40 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHhcccchhHHHHHHHHHHHc-C-CC
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE----------ATLVSVISACTHLVALDQGKWIHAYIRKN-G-LK 458 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~ 458 (798)
..+-..++-.|....+++..+++.+.++.- ||. +.|...++--.+-|+-+.|..+.-.+++. | +.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 345566777888888999999998888763 332 22334444444567777777766665544 2 23
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT---FVGVLG 535 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~ 535 (798)
| ++||-||++-+ .|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..|+.
T Consensus 278 p---------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 278 P---------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLR 331 (1226)
T ss_pred C---------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHH
Confidence 3 46777776532 221 12334455667788888888877 6777643 444554
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
+-.+ .++...++-. + | -.|-.+++|.|.++.-.++++-. ..+.+-.-..++.+|.
T Consensus 332 aaG~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kai 386 (1226)
T KOG4279|consen 332 AAGE--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAI 386 (1226)
T ss_pred Hhhh--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHH
Confidence 4322 1222221111 1 1 13456678999888877765533 2233444567899999
Q ss_pred HHHHHHHhcCCCC
Q 003746 616 RVGRKLVELQPDH 628 (798)
Q Consensus 616 ~~~~~~~~~~p~~ 628 (798)
++.++|+++.|..
T Consensus 387 qAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 387 QAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHhccCCce
Confidence 9999999998864
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.44 E-value=12 Score=40.90 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=101.8
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
-.|+++.|..++..+++. ..+.++.-+...|..++|+++ .||..-. .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 457778777777666632 344556666677777777763 3333321 1123467888888887655
Q ss_pred HHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 553 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+...+|..+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 4 245668899999999999999999998863 26677777888888887666666666666655433
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 003746 633 VLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 633 ~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+|...|++++..+++..
T Consensus 729 ----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHh
Confidence 256678999998887754
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.56 E-value=18 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444555555555555555555555544444332 3444455555555555555555444
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.53 E-value=1.6 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.+..++.+.|+.++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455556666666666666666666665
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.37 E-value=40 Score=35.40 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQP----DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
....+|..++..++++|+++.|...+.++.+..+ ..+...+.-+......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999987652 24566667788899999999999998888763
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.05 E-value=2.2 Score=30.29 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
-.+.-++.+.|+++.|.+..+.+++++|++..+..+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3466788999999999999999999999997655443
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=84 Score=35.84 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=100.9
Q ss_pred HHHHHhcCChHHHHHHHccCCCC-----CcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHH
Q 003746 173 INMYAVCGDLSAARKLFDESPVL-----DLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEA 247 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A 247 (798)
++-+.+.+.+++|...-+..... -...|...|..+.-.|++++|-...-.|...+..-|.--+.-+...+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777888888887665421 2246888899999999999999998888888777777777777766666554
Q ss_pred HHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCc
Q 003746 248 CRLFKEMPK-KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIE 326 (798)
Q Consensus 248 ~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 326 (798)
..+.-.-+. -+...|..++..+.. -+...-.++.++. +++...-..++++. ..+..+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~------------~~q~~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT------------EPQIKQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc------------chHHHhh--c
Confidence 444322222 144567777777766 2222222222211 12222222222221 1111111 1
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh
Q 003746 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLI 361 (798)
Q Consensus 327 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 361 (798)
.+..+...|+..|...+++++|.+++-+...++..
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 12233344999999999999999998776666544
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.93 E-value=20 Score=29.16 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 003746 368 SGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATL 429 (798)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 429 (798)
..+...|++++|..+.+.+..||...|-++... +.|..+++..-+.+|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345578888888888888888888888777654 5666677777777777665 4444444
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.64 E-value=10 Score=35.32 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEKG------VSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999988653 346778888889999999998888877653
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.62 E-value=2.3 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655553
No 308
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.49 E-value=29 Score=30.05 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
..-+......|+-+.-.+++.++.+ +-+|+......+..||.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445666677777777777777664 2366677777777888888888888877777755
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.28 E-value=1.9 Score=27.25 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 003746 154 HDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186 (798)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (798)
+.++++.. |.|...|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667788888888888888888875
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.10 E-value=2.3 Score=37.96 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 003746 301 LSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKAR 380 (798)
Q Consensus 301 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (798)
+..+.+.+.+......+..+.+.+...+..+.+.++..|++.++.++..+.++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444445555555666666666655566677888888888888777777777774222 33344555555666666666
Q ss_pred HHHHhc
Q 003746 381 ALFDAM 386 (798)
Q Consensus 381 ~~~~~m 386 (798)
-++.++
T Consensus 91 ~Ly~~~ 96 (143)
T PF00637_consen 91 YLYSKL 96 (143)
T ss_dssp HHHHCC
T ss_pred HHHHHc
Confidence 665554
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.07 E-value=8.2 Score=35.37 Aligned_cols=45 Identities=13% Similarity=-0.039 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHH
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR----WDDVLEVRGMM 655 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 655 (798)
+++|+.-|++++.++|+...++..++++|...|. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677778888899999999999999999988764 33444444444
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.99 E-value=94 Score=35.63 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=41.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHHh---
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYMK--- 473 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 473 (798)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667899999988876 3345566777766665543322222211 2222211 11112456678888875
Q ss_pred cCCHHHHHHHHhhcCC
Q 003746 474 LGCVDNALEVFHGTEE 489 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~ 489 (798)
..+..+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4678888888876654
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.71 E-value=8.2 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGY 707 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 707 (798)
..+.++-.+.+.|++++|.+..+.+.+. .|...++....+.+.++|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3556777899999999999999998763 35566777777778888887763
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.63 E-value=2.6 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466667777777777777777777666
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.55 E-value=13 Score=30.28 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 236 VLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 236 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
..+...|++++|..+.+....||...|-+|-.. +.|..+++..-+.+|-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 345667999999999999988999999887653 5677777777777776655
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.52 E-value=5.7 Score=39.61 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445555666666777777777777777777767777777777777777777777766654
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.06 E-value=11 Score=34.60 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+++|...|+++.+.+|++..+...|- + .++|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~------~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-M------AAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-H------HHTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-H------HHhhHHHHHHHHHHHhh
Confidence 56788888888999999976555553 2 24577788888776654
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.90 E-value=2.3 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988764
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.73 E-value=9.8 Score=34.46 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=71.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHH-----HHHhccCChHHHHHHHHHHHHhCCCCchh-HHHH
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA-----QASALRLSVFEGKLIHDHVLKAGFDSDVY-VNNT 171 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll-----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 171 (798)
.|..-+. +++.+..++|+.-|..+...|.. .|..|. ...+..|+...|...|+.+-+--..|-.. -...
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3433333 35667777888888877766543 233332 22456677777888887776654333332 1111
Q ss_pred H--HHHHHhcCChHHHHHHHccCCCC-Cc---chHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003746 172 L--INMYAVCGDLSAARKLFDESPVL-DL---VSWNSILAGYVNADNVEEAKFIYNKMPE 225 (798)
Q Consensus 172 l--i~~y~~~g~~~~A~~~f~~~~~~-d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (798)
| .-.+...|.+++.....+.+..+ ++ ..-..|.-+-.+.|++.+|...|.++..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 22345677777777766655422 22 2334555666678888888888887765
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.55 E-value=3 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666677777777777777766664
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.29 E-value=43 Score=30.55 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc-hHHHH--HHHHHhcC
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK-HYGCM--VDLLGRAG 577 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 577 (798)
+++.+..++|+.-|.++.+.|...-.+ ...-........|+...|...|.++-++.. .|.+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 356777888888888888876543322 222233445678889999999998865422 23221 11222 23456788
Q ss_pred CHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 578 MLKEAEELIESMPMS--P-DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 578 ~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.+++.....+.+..+ | -...-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888777322 3 234556777778889999999999998876
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.50 E-value=99 Score=34.19 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=76.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTY-PLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTL 172 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (798)
-+...|+.+|.---.....+.+...+..++.. -|..+-| .....-=.+.|..+.+.++|+..++ |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 35557887776555555555666667766632 3444432 2222223466777777788877765 356666667666
Q ss_pred HHHHHh-cCChHHHHHHHccCCC------CCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHH
Q 003746 173 INMYAV-CGDLSAARKLFDESPV------LDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232 (798)
Q Consensus 173 i~~y~~-~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (798)
...... .|+.+..++.|+.... .....|...|.--..++++.....+|++..+-...-++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 655543 3666666666665431 22334555555555555666666666655554433333
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.29 E-value=8.2 Score=38.82 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG 577 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 577 (798)
..-|.+.|.+++|+..|..-.. +.| |.+++..-..+|.+...+..|..-...++. . -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3569999999999999998776 577 889999999999999988888776665543 1 123456666655
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 003746 578 -------MLKEAEELIESM-PMSPDV 595 (798)
Q Consensus 578 -------~~~~A~~~~~~~-~~~p~~ 595 (798)
...||.+-.+.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 445554444443 456663
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.86 E-value=7.8 Score=38.59 Aligned_cols=97 Identities=8% Similarity=0.158 Sum_probs=63.4
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 003746 355 GHNLDLISWNSMISGYLKCGSVEKARALFDAMIEK---------DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPD 425 (798)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 425 (798)
+......+-..++..-....+++++...+-.+... ..++|-.++. .-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 33333334444443333566677776666555321 3344443333 3467788888888888899999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 426 EATLVSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 426 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
.+|+..+++.+.+.++...|.++.-.++..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999888888888877776654
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.41 E-value=19 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHh-cCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PDVATWGALLGACKKHG---DHEMGERVGRKLVE-LQPDH-DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
+...+--.+.+++.... +..+++.+++.+++ -.|.. -.+.+.|+-.+.+.|+++.++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555443 45567777777775 33432 23344455567777888888887777765
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.39 E-value=3.3 Score=24.26 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=19.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
.....|+.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888999998888764
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.72 E-value=4.8 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.55 E-value=2.4e+02 Score=37.00 Aligned_cols=309 Identities=10% Similarity=0.054 Sum_probs=170.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc----CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCC
Q 003746 334 ALIHMYSSCGEITTAEKLFDAG----HNLD--LISWNSMISGYLKCGSVEKARALFDA-MIEKDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 334 ~li~~y~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 406 (798)
.|..+-.+++.+..|...+++- .+.+ ..-+..+...|..-++.|....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4455667888999999888873 1111 11233344477777777776666652 33332 2234556677899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhh
Q 003746 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHG 486 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (798)
+..|...|+++.+.+ ++...+++.++......+.++...-..+......-+.....++.=+.+--+.++++.-.....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998763 233667777777777777776665544433332212122223333444467777777666655
Q ss_pred cCCCCcchHHHH-HH-HHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH----------
Q 003746 487 TEEKGVSSWNAL-II-GFAMNGL--ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNS---------- 552 (798)
Q Consensus 487 ~~~~~~~~~~~l-i~-~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---------- 552 (798)
.++...|.+. +. ...+..+ .-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5566667665 22 2222211 111112333333221111 2233333322222222111
Q ss_pred HHHhCCCcCCcchH-HH--HHHHHHhcCCHHHHHHH---HHhC----CCCC-----CHHHHHHHHHHHHHcCChhHHHHH
Q 003746 553 MIQEHRLEPNSKHY-GC--MVDLLGRAGMLKEAEEL---IESM----PMSP-----DVATWGALLGACKKHGDHEMGERV 617 (798)
Q Consensus 553 ~~~~~~~~p~~~~~-~~--l~~~~~~~g~~~~A~~~---~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~ 617 (798)
.....++.++..+. +. ...-+.+.+....+.+- +++. ...| -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11112344432211 11 01111122221112222 2211 1122 256899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.-++.+..+ +..+.-.+......|+-..|..+++...+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887764 4678888999999999999999999887644
No 329
>PRK09687 putative lyase; Provisional
Probab=77.50 E-value=85 Score=31.77 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=13.2
Q ss_pred CCcccHHHHHHHHHhcCCh----hHHHHHHHHH
Q 003746 257 KDLVSWSALISCYEQNEMY----EEALVLFMNM 285 (798)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~----~~A~~l~~~m 285 (798)
+|...-...+.++.+.|+. .+++.++..+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3444444444455555442 2445555444
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.33 E-value=1.4e+02 Score=34.25 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=28.6
Q ss_pred cCChhHHHHHHHHHHhc---CCCCc-chHH-----HHHHHHHhcCChhHHHHHHHHHH
Q 003746 608 HGDHEMGERVGRKLVEL---QPDHD-GFHV-----LLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~---~p~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.|+..+..+.......+ .|+.. ..+. .+.+.|...|+.++|...+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57776666555555543 23222 2232 34556777888888888877654
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.31 E-value=12 Score=35.12 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChhHH
Q 003746 575 RAGMLKEAEELIESMPMSP--DVATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a 648 (798)
+.|+ ++|.+.|-.+.-.| +....-.-+..|....|.++++.++-+++++.+. ++..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 55666666663232 3333344445555678899999999999886432 467788899999999998887
Q ss_pred H
Q 003746 649 L 649 (798)
Q Consensus 649 ~ 649 (798)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.30 E-value=13 Score=35.84 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCChh-------HHHHHHHHHHhcC--C----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 595 VATWGALLGACKKHGDHE-------MGERVGRKLVELQ--P----DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+--+.+.|+..|+.+ .|.+.|+++.+.+ | +......+++.++.+.|+.++|.+.+.++...+-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 345666777777777754 4555555555432 2 2345677899999999999999999999886543
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.23 E-value=19 Score=29.42 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
+..+-+..+....+-|+.....+.|.||.+.+++.-|.++|+.+..+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666677778899999999999999999999999999999876543 44447777664
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.08 E-value=82 Score=30.88 Aligned_cols=232 Identities=15% Similarity=0.235 Sum_probs=136.2
Q ss_pred hcCCHHHHHHHHHhcCC----C---CHHHHHHHHHHHHhCCChHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHhcc
Q 003746 372 KCGSVEKARALFDAMIE----K---DVVSWSTMISGYAQHDQFSETLSLFMEMQH---HGI--RPDEATLVSVISACTHL 439 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~pd~~t~~~ll~a~~~~ 439 (798)
+..+.++|..-|....+ + .-.+.-.+|..+.+.|++++.++.|.+|.. +.+ .-+....++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44466777777766532 1 223455678888888888888888888753 112 12345667777766655
Q ss_pred cchhHHHHHHHHHHHc-----CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC------------C---cchHHHHH
Q 003746 440 VALDQGKWIHAYIRKN-----GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK------------G---VSSWNALI 499 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~---~~~~~~li 499 (798)
.+.+.-..+++--++. +-..--.+-+-|...|...|++..-.++++++... + ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555555554433221 11111123345667777777777777777765421 1 34677778
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHHhCCCc--CC---cchHHH
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSG-VTPNEITFVGVLGACR-----HMGLVDEGHRHFNSMIQEHRLE--PN---SKHYGC 568 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~ 568 (798)
..|....+-.+--.+|++...-. .-|.. ....++.-|. +.|.+++|..-|-++.+.+.-. |. ..-|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 88988888888888888766522 23333 3445666663 5688888876555554544322 22 233566
Q ss_pred HHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 569 MVDLLGRAGM----LKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 569 l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
|.+++.+.|- -++|.- ..-.|.......|+.+|...
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 6777777661 122210 12235566778888888654
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.88 E-value=21 Score=28.89 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 508 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
.-++.+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.+..+-| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335666677777788999999999999999999999999999998864433 34446665543
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=80 Score=30.47 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHH-HcCChhHHHHHHHHHHhcCCCCcch
Q 003746 573 LGRAGMLKEAEELIESM---PMSPDVATWGA---LL--GACK-KHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~--~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
-+..|++.+|.++|++. .+..+..-|.. ++ ..|. -..+.--+...+++-.+++|.-..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34677888888888776 22223333322 11 1222 2366667788888888899975443
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.36 E-value=1.5e+02 Score=33.53 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=116.4
Q ss_pred HHhCCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccc-----chhHHHHHHHHHHHcCCCCcHHHHhHHH
Q 003746 401 YAQHDQFSETLSLFMEMQH-------HGIRPDEATLVSVISACTHLV-----ALDQGKWIHAYIRKNGLKINSILGTTLI 468 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li 468 (798)
+....+.+.|+..|+.+.. .| +......+-.+|.+.. +.+.|..++....+.|.+ +.... |.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HH
Confidence 3344566666666666654 33 1222333333443322 344566666666665533 22222 22
Q ss_pred hhHHh---cCCHHHHHHHHhhcCCCCc-chHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 469 DMYMK---LGCVDNALEVFHGTEEKGV-SSWNALIIGFA----MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 469 ~~~~~---~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
.+|.. ..+...|.+.|......+- .+.-.+...|. ...+.+.|..++++..+.| .|-..--...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 22222 2345667777666655432 22222222221 1235667777777777766 3332222223333333
Q ss_pred CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH-----Hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----C
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL-----GR--AGMLKEAEELIESMPMSPDVATWGALLGACKKH----G 609 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g 609 (798)
+.++.+.-.+..+.+ .|.+-....-..+.+.. .+ ..+.+.+..++.+...+-+......|...|..- .
T Consensus 411 ~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 455554444444422 22221111111111111 11 224555666666654444555555555444332 3
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-C--ChhHHHHHHHHHHhCC
Q 003746 610 DHEMGERVGRKLVELQPDHDGFHVLLSNIHASK-G--RWDDVLEVRGMMVRRG 659 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~~ 659 (798)
+++.|...+.++.+.. ......|+.++..- | .+..|.+++....+.+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 5777777777776655 55666777776543 1 2577888887776543
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.29 E-value=10 Score=37.77 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCCchhhhhhccccccCccCCCChhHHHHhhhcCCC-------CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 003746 57 GLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLES-------PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGV 129 (798)
Q Consensus 57 g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 129 (798)
|......+-..++. .-. ...+++++...+-.+.. |+...+ +.++.+. .-+++.++.++..=...|+-|
T Consensus 59 g~~~s~~~Vd~~V~--v~~-~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVD--VIS-SREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhh--ccc-cccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 33333344444444 333 45667777666655543 222221 1222222 336667777777777778888
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003746 130 DNYTYPLLAQASALRLSVFEGKLIHDHVLKAG 161 (798)
Q Consensus 130 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 161 (798)
|.+++..++..+.+.+++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777777666654
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.17 E-value=1.6e+02 Score=33.87 Aligned_cols=209 Identities=9% Similarity=-0.074 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003746 345 ITTAEKLFDAGHNL--DLISWNSMISGYLKCGSVEKARALFDAMIEK--D-VVSWSTMISGYAQHDQFSETLSLFMEMQH 419 (798)
Q Consensus 345 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 419 (798)
..+|...++..... |...+..-+..-.+.++++.+...+..|+.. + ..-.--+..++...|+.++|...|++...
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55666666653322 4444444455555888888888888888642 2 22223355666678999999999988743
Q ss_pred cCCCCCHHHHHHHHHHHhcccchhHH-HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-CcchHHH
Q 003746 420 HGIRPDEATLVSVISACTHLVALDQG-KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNA 497 (798)
Q Consensus 420 ~g~~pd~~t~~~ll~a~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 497 (798)
.. +|-.++.+- +.|..-.- ...... ....+..+.. -.-+..+...|....|...+..+... +......
T Consensus 375 ---~~---~fYG~LAa~-~Lg~~~~~~~~~~~~-~~~~~~~~~~--~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~ 444 (644)
T PRK11619 375 ---QR---GFYPMVAAQ-RLGEEYPLKIDKAPK-PDSALTQGPE--MARVRELMYWNMDNTARSEWANLVASRSKTEQAQ 444 (644)
T ss_pred ---CC---CcHHHHHHH-HcCCCCCCCCCCCCc-hhhhhccChH--HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 12 333333221 11211000 000000 0000010111 12234556678888888777765533 3334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSG----VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 566 (798)
+.....+.|.++.++.........+ --|- .|...+..+++.-.++.++- +.-+..+.++.|+..+.
T Consensus 445 la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 445 LARYAFNQQWWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKARSP 514 (644)
T ss_pred HHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCCccC
Confidence 4555556777777776654332210 0121 35566666665555665542 33344456788875443
No 340
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.00 E-value=5.1 Score=42.40 Aligned_cols=83 Identities=17% Similarity=0.051 Sum_probs=52.2
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 003746 574 GRAGMLKEAEELIESM-PMSPDVATWGAL-LGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
.+.+.++.|..++.++ .++|+-..|.+. ..++.+.+++..|+.=+.++++++|...-.|+.-+.++...+++.+|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3445556666655554 455644433222 25566667777777777777777777777777777777777777777777
Q ss_pred HHHHH
Q 003746 652 RGMMV 656 (798)
Q Consensus 652 ~~~m~ 656 (798)
++.-.
T Consensus 95 l~~~~ 99 (476)
T KOG0376|consen 95 LEKVK 99 (476)
T ss_pred HHHhh
Confidence 66543
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.88 E-value=1.6e+02 Score=33.73 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=14.0
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 003746 573 LGRAGMLKEAEELIESMPMSP 593 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~~~~p 593 (798)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 357788888888888887666
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.85 E-value=62 Score=28.83 Aligned_cols=66 Identities=20% Similarity=0.120 Sum_probs=41.2
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACK 606 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 606 (798)
...++.+++..++..+. -+.|+ ...-..-+..+.+.|++++|..+|++..-.+ ....-..|+..|.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34677888888887774 36665 3444445566778888888888888884332 3333344444443
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.20 E-value=47 Score=35.29 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=22.5
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
.+.|+++.+...+....+ -+.....+..+++...-+.|++++|...-+.|
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 344555555554444322 12223344444444455555555555544444
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.46 E-value=7.1 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666777777766666543
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.39 E-value=11 Score=37.10 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++.....|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445567888999999999999999999999999999999999999999899888888753
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.09 E-value=4.6 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+..++.+|...|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.94 E-value=23 Score=28.65 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHH
Q 003746 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVL-KAGFDSDVYVNNTLIN 174 (798)
Q Consensus 114 ~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 174 (798)
++.+-+..+....+.|++....+.|+||.+.+|+..|..+++-+. +.| .+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 566667777777888888888888888888888888888888766 333 23445555543
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.81 E-value=3.5e+02 Score=35.71 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=67.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhC----CCC--CchHHHHHHHHHhhcCCHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCh
Q 003746 203 ILAGYVNADNVEEAKFIYNKM----PER--NIIASNSMIVLFGRKGNVAEACRLFKE-MPKKDLVSWSALISCYEQNEMY 275 (798)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m----~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~ 275 (798)
+..+=.+.+.+..|+..++.- .+. ....+-.+...|+..+++|...-+... ...++ ...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 334555677888888888873 222 223344555588888887777766653 33332 23345556677889
Q ss_pred hHHHHHHHHHHHCCCCCC-chhHHHHHHHHhccCchHHHHH
Q 003746 276 EEALVLFMNMIDHRVMVD-EVVVVSVLSACANLTVVKAGTS 315 (798)
Q Consensus 276 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 315 (798)
..|...|+++.+.+ |+ ..+++-++......+.++...-
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHh
Confidence 99999998887743 44 4566666666555555554433
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.32 E-value=11 Score=40.98 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 613 (798)
.-.|+...|...+..+.. ..|. ......|.+.+.+.|...+|..++.+. .+ ...+.++..+.+++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 456888899988887753 4552 445566788888888888888887665 22 2356677888899999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
|++.+++++++.|+++.+-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999998877766544
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.29 E-value=17 Score=34.40 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.+.-+..+.+.+.+++|+...+.- +-+| |...-..|+..++..|++++|..-++-+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344566777888888888876543 4455 5666777888888899999998888888888887643
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.26 E-value=1.2e+02 Score=30.26 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 003746 327 CYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 327 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 406 (798)
.|+.....+...|.+.|++.+|+..|=.+..++...+..++.-....|...++ |. -....+-.|...++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dl-fi~RaVL~yL~l~n 156 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DL-FIARAVLQYLCLGN 156 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HH-HHHHHHHHHHHTTB
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hH-HHHHHHHHHHHhcC
Confidence 46788889999999999999999998766666555554444333333333322 11 12233445666777
Q ss_pred hHHHHHHHHHHHHc
Q 003746 407 FSETLSLFMEMQHH 420 (798)
Q Consensus 407 ~~~A~~l~~~m~~~ 420 (798)
...|..++....+.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88787777666543
No 352
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.03 E-value=9.1 Score=37.89 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
.+.|+.++|..+|+.++.+.|+++....-++.......+.-+|.+++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45677888888888888888888877777776666666666666665433
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.67 E-value=1.5e+02 Score=31.21 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=58.8
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcC--CcchHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEP--NSKHYGCMVDLLG-RAGMLKEAEELIESMPM--SPD------VATWGALL 602 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~l~ 602 (798)
+..+.+.|-+..|.++.+-+.. +.| |+.....+||.|+ ++++++--.++.+.... ..+ ...|..-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 4566788888899988887754 566 4555666778775 77888877777776522 111 12333333
Q ss_pred HHHHHcCCh---------------hHHHHHHHHHHhcCCC
Q 003746 603 GACKKHGDH---------------EMGERVGRKLVELQPD 627 (798)
Q Consensus 603 ~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 627 (798)
++...++. +.|.+.+.+++...|.
T Consensus 187 -A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 -AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33344444 7888899998888774
No 354
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.37 E-value=12 Score=35.87 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 591 MSPDV-ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 591 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+.|.. .-|..=+-.+.+..+++.+..--++++++.|+..-..+.|+........+++|..++.+.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34443 223334444445555666666666666666666656666666666666666666665555
No 355
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.30 E-value=51 Score=33.25 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCCcchHH
Q 003746 613 MGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~ 633 (798)
.|.+...++++.+|.-|.+..
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 467778888899998776554
No 356
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.98 E-value=3.7 Score=41.41 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
.|.+++|++.|... +..| ....+..-.+++.+.++...|++=+..+++++|+...-|-.-+.+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666655 3333 333444445566667777777777777777777777777777777777788888777777
Q ss_pred HHHhCCCc
Q 003746 654 MMVRRGVV 661 (798)
Q Consensus 654 ~m~~~~~~ 661 (798)
..-+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 77666654
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.02 E-value=9.3 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHc
Q 003746 169 NNTLINMYAVCGDLSAARKLFD 190 (798)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~f~ 190 (798)
...|...+...|++++|+++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666554
No 358
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.94 E-value=12 Score=30.20 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566667778888777888888888888888888777666654
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.92 E-value=45 Score=32.26 Aligned_cols=56 Identities=7% Similarity=-0.105 Sum_probs=47.0
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.++...|++-++++.....+...|.+.-+|+.-+.+.+..=+..+|.+-+....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44557799999999999999999999999999888887777778888888777653
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.79 E-value=39 Score=31.78 Aligned_cols=74 Identities=5% Similarity=-0.005 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--cCCcchHHHHHHHHHhcCCHHHHH
Q 003746 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL--EPNSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 509 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
++|.+.|-++...+.--+......|. .|.-..+.++++.++.++.+-+.- .+|+..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34555555555554333322223333 333345666666666655543221 234555556666666666555553
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.88 E-value=13 Score=28.72 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=25.7
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHH
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEEL 585 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 585 (798)
+....++|+..|.+++++..-.|+ ..++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666554332232 34455566666666666665554
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.71 E-value=58 Score=30.52 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.++.+.+.++.|.+-..+. .+.|. .....--..+|.+...++.|++-|+++++++|.....-
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 3444455555554443332 23332 11222223456666788888888999999888765433
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.25 E-value=1.6e+02 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.013 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Q 003746 494 SWNALIIGFAMNGLAD---KSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 557 (798)
+...++.+|...+..+ +|..+++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 5666777777766544 466666666553 334 3355556666777888888888888888753
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.06 E-value=1.5e+02 Score=29.19 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=111.0
Q ss_pred cCCHHHHHHHHhhcCC----C---CcchHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCC--CHHHHHHHHHHHHhcC
Q 003746 474 LGCVDNALEVFHGTEE----K---GVSSWNALIIGFAMNGLADKSLEMFSEMKK---SGVTP--NEITFVGVLGACRHMG 541 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p--~~~t~~~ll~a~~~~g 541 (798)
..++++|+.-|++..+ + +..+.-.||..+.+.|++++.++.|.+|.- ..+.. +..+.++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776543 1 234566778888888999888888888753 22222 2346677777666666
Q ss_pred cHHHHHHHHHHHHHhC----CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 003746 542 LVDEGHRHFNSMIQEH----RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP-------MSPD-------VATWGALLG 603 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-------~~~~~~l~~ 603 (798)
+.+.-.++++.-+... +-..-..+-.-|...|...|.+.+-.++++++. -..| ..+|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6655555554432211 111123445567888888888888888877661 0111 235555667
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCc--chHH----HHHHHHHhcCChhHHHHH-HHHHH
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHD--GFHV----LLSNIHASKGRWDDVLEV-RGMMV 656 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~----~l~~~~~~~g~~~~a~~~-~~~m~ 656 (798)
.|..+.+-..-..++++++.+..--| ...- .=+.++.+.|+|++|-.- |+..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 77778888888888999886543221 1111 123556777888887644 44433
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.22 E-value=32 Score=28.21 Aligned_cols=60 Identities=3% Similarity=-0.112 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003746 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174 (798)
Q Consensus 114 ~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (798)
+..+-+..+....+.|++....+.|+||.+.+++..|..+++.+...- ......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 555666667777788888888888888888888888888888775442 233335655553
No 366
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.21 E-value=2.2e+02 Score=32.26 Aligned_cols=82 Identities=17% Similarity=0.019 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CChhHHHHHH
Q 003746 578 MLKEAEELIESMPM--SPDVATWGALLGACK--KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK-GRWDDVLEVR 652 (798)
Q Consensus 578 ~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~ 652 (798)
+...|.++|..... .++...+-++.-... ...+.+.|...++++-+.++ +.+...++..+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 45566666666521 222222222221111 23467777777877777762 23333443333322 7777777777
Q ss_pred HHHHhCCCc
Q 003746 653 GMMVRRGVV 661 (798)
Q Consensus 653 ~~m~~~~~~ 661 (798)
..+.+.|..
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 777766654
No 367
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=63.12 E-value=2e+02 Score=30.14 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=113.9
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHH--HHHHHCCCCCCHHHHHHHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMF--SEMKKSGVTPNEITFVGVLG 535 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~--~~m~~~g~~p~~~t~~~ll~ 535 (798)
..+..+...+++++...++|+.--+.. .....++|+...|+.-. +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 334455556666666666666543332 12234566666666532 22333334566666665655
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGA------------LLG 603 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------l~~ 603 (798)
.+.. +.++.- |-+.. .+..-..|...+-.+|+.++|.+++.+.+++ ||.+ -+.
T Consensus 115 tLr~---VtegkI-yvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRT---VTEGKI-YVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHH---hhcCce-EEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 4421 111111 10000 0122235677888899999999999887543 2222 246
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEE
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHD-------GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIH 676 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~ 676 (798)
-|...+|+-.|.-+.++.....-+++ .+|.++..+..+.+.+=++.+.++.+-+.|..+...--|+.+-..+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 67788899999888888765322222 35778888888999999999999999877765543334666555444
Q ss_pred EEEe
Q 003746 677 EFLA 680 (798)
Q Consensus 677 ~~~~ 680 (798)
.|+.
T Consensus 260 ~f~~ 263 (439)
T KOG1498|consen 260 SFCV 263 (439)
T ss_pred eEEe
Confidence 4443
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.92 E-value=52 Score=34.96 Aligned_cols=130 Identities=11% Similarity=0.145 Sum_probs=78.8
Q ss_pred HhcCCHHHHH-HHHhhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 472 MKLGCVDNAL-EVFHGTEE--KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 472 ~~~g~~~~A~-~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
...|++-.|- ++|..+.. .+++........+...|+++.+.+.+...... +.....+...++...-+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3457776664 34443332 12332222333456789999999988776543 45556788888999999999999999
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGA 604 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 604 (798)
.-+-|..+ .++ +.+....-...--..|-+|+|.-.+++. .+ +|...-|-..+..
T Consensus 379 ~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 379 TAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 88888653 332 2222222222223457788888888877 33 3445556555554
No 369
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=61.18 E-value=2e+02 Score=29.43 Aligned_cols=53 Identities=13% Similarity=0.368 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CcHHHHHHHHHHHHHhCCCcC
Q 003746 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRH--M----GLVDEGHRHFNSMIQEHRLEP 561 (798)
Q Consensus 509 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~~~p 561 (798)
++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|.+.+.+-.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 3566788899999999888877664443332 2 245678899999988765533
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.08 E-value=3.3e+02 Score=31.98 Aligned_cols=219 Identities=13% Similarity=0.099 Sum_probs=110.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHhcccchhHHHHHHHHHHHc----CCCCcHHHHhHHH
Q 003746 401 YAQHDQFSETLSLFMEMQHHGIRPDEA-------TLVSVIS-ACTHLVALDQGKWIHAYIRKN----GLKINSILGTTLI 468 (798)
Q Consensus 401 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~-a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 468 (798)
.....++.+|..+..+....-..|+.. .+..+-. .....|+++.+..+.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776542222211 2222221 123457778887777766643 3345566677777
Q ss_pred hhHHhcCCHHHHHHHHhhcCCC----Ccc---hHHHHH--HHHHHcCCh--HHHHHHHHHHHHC--CCCCC----HHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEK----GVS---SWNALI--IGFAMNGLA--DKSLEMFSEMKKS--GVTPN----EITFV 531 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~li--~~~~~~g~~--~~A~~l~~~m~~~--g~~p~----~~t~~ 531 (798)
.+..-.|++++|..+.....+. |+. .|..+. ..+...|+. ++.+..|...... +-+|- ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777889999888777655432 433 344332 234455632 2333333333221 11221 23445
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHHhCCCcCCcch--HHHHHHHHHhcCCHHHHHHHHHhC-----CCCC--CHHHHHHH
Q 003746 532 GVLGACRHM-GLVDEGHRHFNSMIQEHRLEPNSKH--YGCMVDLLGRAGMLKEAEELIESM-----PMSP--DVATWGAL 601 (798)
Q Consensus 532 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p--~~~~~~~l 601 (798)
.++.++.+. +...++..-++-- ..+...|-..- +.+|+..+...|++++|...++++ .-.| +..+-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~-~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVG-SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhh-hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555542 1222222222221 11122222222 236777888889999998888877 1111 22222222
Q ss_pred HHHH--HHcCChhHHHHHHHH
Q 003746 602 LGAC--KKHGDHEMGERVGRK 620 (798)
Q Consensus 602 ~~~~--~~~g~~~~A~~~~~~ 620 (798)
+... ...||.+++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2222 346777776666555
No 371
>PRK12798 chemotaxis protein; Reviewed
Probab=59.22 E-value=2.5e+02 Score=29.92 Aligned_cols=179 Identities=14% Similarity=0.175 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHhhcCCC----CcchHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCcHH
Q 003746 474 LGCVDNALEVFHGTEEK----GVSSWNALIIGF-AMNGLADKSLEMFSEMKKSGVTPNEI----TFVGVLGACRHMGLVD 544 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 544 (798)
.|+.++|.+.+..+... .+..+-+|+.+- ....+..+|+++|++..- ..|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58889999998888754 345666666654 456688999999998776 356543 3333445667889999
Q ss_pred HHHHHHHHHHHhCCCcCCcchH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 545 EGHRHFNSMIQEHRLEPNSKHY-GCMVDLLGRA---GMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
++..+-.....+|...|=...| .-++..+.+. -..+.-.+++..|.-.-...+|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9988888887777666643322 2333344333 34455556666664223466888888888999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhc-----CChhHHHHHHHHH
Q 003746 621 LVELQPDHDGFHVLLSNIHASK-----GRWDDVLEVRGMM 655 (798)
Q Consensus 621 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 655 (798)
++.+.+.+ ..-...+.+|... .+.+++.+.++.+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99876432 2333334444332 3455555555443
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.26 E-value=31 Score=27.35 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 003746 240 RKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEA 278 (798)
Q Consensus 240 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (798)
..|+.+.|+++++.++ +....+..++.++-+.|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777776 6666677777777666665444
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.04 E-value=20 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 633 VLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 633 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
..|+.+|...|+.+.|+++++.+.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999887644
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.87 E-value=15 Score=35.04 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=43.3
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
+..+.|+.+.|.+++.+. ...| +...|--+...--+.|+.+.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445677777788887776 3334 567788887777888888888888888888887653
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.14 E-value=1.4e+02 Score=31.84 Aligned_cols=52 Identities=6% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HhcCcHHHHHHHHHHHHH
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGAC--RHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~--~~~g~~~~a~~~~~~~~~ 555 (798)
...+++..|.++|+++... +.++.. .+..+..+| ...-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3678888999999998886 555554 334444444 345678888888888755
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.02 E-value=18 Score=21.84 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=21.6
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
|+.+.+..+|++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4677888888988888887777766654
No 377
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.94 E-value=3.8e+02 Score=31.43 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=45.1
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 003746 205 AGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMN 284 (798)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 284 (798)
..|...|+++.|+++-+.-++.=..++-.-.+.|...+++..|-+++.++. .++-.+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 446667888888777654422111233344456666777777777776663 33444444444555544 4444433
Q ss_pred HHHCCCCCCch
Q 003746 285 MIDHRVMVDEV 295 (798)
Q Consensus 285 m~~~g~~p~~~ 295 (798)
=+-..+.|...
T Consensus 441 KKL~~lt~~dk 451 (911)
T KOG2034|consen 441 KKLDRLTPEDK 451 (911)
T ss_pred HHHhhCChHHH
Confidence 22233444433
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.80 E-value=95 Score=25.02 Aligned_cols=62 Identities=29% Similarity=0.153 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChh-HHHHHHHHH
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH--DGFHVLLSNIHASKGRWD-DVLEVRGMM 655 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~m 655 (798)
|......+...+...|+++.|++.+-.+++.+|+. ...-..|..++...|.-+ -+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 56677778888888888888888888888776543 556666777777777643 555555555
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.55 E-value=20 Score=24.34 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 265 LISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 380
>PRK10941 hypothetical protein; Provisional
Probab=55.29 E-value=74 Score=31.88 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 567 GCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
+.+-..|.+.++++.|+...+.+ .+.| |+.-|.--.-.|.+-|.+..|..-++..++..|+++..-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34666778888888888888877 4445 45567777777888899999999899999888888765443
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.53 E-value=36 Score=27.67 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHcCChhHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 606 KKHGDHEMGERVGRKLVELQPDH---------DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+.||+..|.+.+.+.++..... ......++.++...|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888888777777532211 12344577888899999999999988764
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.40 E-value=1.1e+02 Score=30.51 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=42.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh----
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK---- 473 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 473 (798)
|.+++..|++.+++...-+--+.--+..+.....-|-.|++.+......++-+.-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777788888888766544433211111222233333345555555555555544443222233335555544443
Q ss_pred -cCCHHHHHHHH
Q 003746 474 -LGCVDNALEVF 484 (798)
Q Consensus 474 -~g~~~~A~~~~ 484 (798)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555543
No 383
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.19 E-value=40 Score=21.69 Aligned_cols=30 Identities=13% Similarity=-0.051 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCChhHHHHH--HHHHHhcCCC
Q 003746 598 WGALLGACKKHGDHEMGERV--GRKLVELQPD 627 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~ 627 (798)
|-.+...+..+|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556666667777777777 3355555554
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.89 E-value=2.6e+02 Score=28.20 Aligned_cols=56 Identities=5% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC-----CCCcchHHHHHHHHHHcCChHHHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTE-----EKGVSSWNALIIGFAMNGLADKSLE 513 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 513 (798)
.++..+...+++.+++.+++..-.++++... ..|...|...|..-...|+..-...
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 3444444555555566666665555555432 2355566666666666666543333
No 385
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.77 E-value=3.3e+02 Score=29.13 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 364 NSMISGYLKCGSVEKARALFDAMIEK---DVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
..|+.-|...|++.+|.+..+++.-| ..+.+-+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44555666666666666666665444 34455666666666665555555555554444
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.87 E-value=3.4e+02 Score=29.03 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCC---CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--
Q 003746 200 WNSILAGYVNADNVEEAKFIYNKMPER---NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM-- 274 (798)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-- 274 (798)
-|-++..|+..|+..+|.+..+++..+ +..+-.+|+......-.-.-...++.+-...+.++-+.+..++.+.+.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Confidence 455677788888888888888887654 333444444433222111111222222223355566666666666543
Q ss_pred ------hhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHH
Q 003746 275 ------YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTA 348 (798)
Q Consensus 275 ------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 348 (798)
...|...|+...-+.+.-+-..-+++-......|+.+..+..- .....+|.-|...|+..+.
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fk------------k~~~~IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFK------------KDLTPIIQEYFLSGDTPEV 364 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHH------------HhhHHHHHHHHhcCChHHH
Confidence 2345555555432211111000011111111223322211111 1235688889999999888
Q ss_pred HHHHHhc
Q 003746 349 EKLFDAG 355 (798)
Q Consensus 349 ~~~~~~~ 355 (798)
.+.++..
T Consensus 365 i~~L~DL 371 (645)
T KOG0403|consen 365 IRSLRDL 371 (645)
T ss_pred HHHHHHc
Confidence 8888863
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.43 E-value=1.7e+02 Score=29.12 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=56.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH--
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKS--GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG-- 574 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 574 (798)
|.+++.-+++.+++...-+--+. .++|...-.. |-.|++.|.+....++-....+.-+ .-+..-|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 67777788888877655444331 2444333333 3457888888888888777765311 122445888777765
Q ss_pred ---hcCCHHHHHHHHHhC
Q 003746 575 ---RAGMLKEAEELIESM 589 (798)
Q Consensus 575 ---~~g~~~~A~~~~~~~ 589 (798)
-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 469999999988543
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.02 E-value=3.6e+02 Score=29.03 Aligned_cols=78 Identities=15% Similarity=0.009 Sum_probs=39.3
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCh
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDNYT--YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY--VNNTLINMYAVCGDL 182 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 182 (798)
++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. -..+.+...++.|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 445555443 33445676665533 334445555566654 334444556444322 112334455566777
Q ss_pred HHHHHHHccC
Q 003746 183 SAARKLFDES 192 (798)
Q Consensus 183 ~~A~~~f~~~ 192 (798)
+.+..+++..
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 6666666544
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.99 E-value=84 Score=27.45 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
....|.-++.+.++++++++..+.+++.+|++.....
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3445677888999999999999999999999875443
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.81 E-value=5.2e+02 Score=30.83 Aligned_cols=125 Identities=13% Similarity=0.227 Sum_probs=63.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYA 177 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 177 (798)
-|-.|+.-|...|.+++|++++.+.....-..|... .+.-..+.+.+.+.+ .++. .|+--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~-~~~~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLG-AENL----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhc-ccch----hHHHHHh
Confidence 488899999999999999999998874221011110 011122334444444 2221 1111111
Q ss_pred ---hcCChHHHHHHHccCCCCCcchH-HHHHHHHHhCCCHHHHHHHHhhCCC----CCchHHHHHHHHHhh
Q 003746 178 ---VCGDLSAARKLFDESPVLDLVSW-NSILAGYVNADNVEEAKFIYNKMPE----RNIIASNSMIVLFGR 240 (798)
Q Consensus 178 ---~~g~~~~A~~~f~~~~~~d~~~~-~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~y~~ 240 (798)
-..+.+.+.++|-.-......+. ...+-.|......+-+...++.+.. .+....+.++..|++
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 12345555666644110000111 1123345566666677777777653 245566777777664
No 391
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.73 E-value=64 Score=32.82 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-P---MSP--DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
+|--=.+-|.+..++..|...|.+. . -.| +.+.|+.-..+-...||+..++.=..+++.++|.+.-.|+.=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456678889999999998776 1 123 456677777677778999999999999999999999888888888
Q ss_pred HHhcCChhHHHHHHHHH
Q 003746 639 HASKGRWDDVLEVRGMM 655 (798)
Q Consensus 639 ~~~~g~~~~a~~~~~~m 655 (798)
+....++.+|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888866666555443
No 392
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.70 E-value=2e+02 Score=27.94 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHG 609 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 609 (798)
++.++...|+.+.|..+++.+ +-.+ +......+... ..+|.+.||..+.+....+-....|..++..|....
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~----~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV----GPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc----CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 445555566666666666544 1111 12222222333 455677777776666532112335666666555433
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.64 E-value=62 Score=28.69 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 003746 579 LKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 646 (798)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++.....+.+++|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456777777775 22333344555677899999999999999999999998888888877665433
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.08 E-value=94 Score=26.11 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
-|..++..|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888888888888888776
No 395
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=1.8e+02 Score=28.38 Aligned_cols=19 Identities=5% Similarity=-0.288 Sum_probs=7.6
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 003746 498 LIIGFAMNGLADKSLEMFS 516 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~ 516 (798)
-+-.+.+..+++.+.+=-+
T Consensus 50 ralchlk~~~~~~v~~dcr 68 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVEEDCR 68 (284)
T ss_pred HHHHHHHhhhhhhhhhhHH
Confidence 3334444444444433333
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.48 E-value=4.2e+02 Score=29.05 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIG 501 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 501 (798)
|...+.+++..+.......-.+.+..++...| -+-..+-.++..|... .-++-..+++++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44445555555555544444555555554443 2233344444555444 23333444443322 122222223333
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~ 520 (798)
|-+ ++.+.+..+|.+...
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 322 444555555554443
No 397
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.11 E-value=6.1e+02 Score=30.85 Aligned_cols=93 Identities=9% Similarity=0.065 Sum_probs=46.3
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHH-HHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNAL-EVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
++..+-.+.+..+.+.|..+.+. .+...+...+...-...+.++...+. +++...+..+.+ .|+...-...+.++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 34555555666666666544332 23333334444444445555555543 345555555553 45555555555555
Q ss_pred HhcCcHHHHHHHHHHHHH
Q 003746 538 RHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~ 555 (798)
.+.+....+...+..+.+
T Consensus 863 ~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 863 TRWPGDPAARDALTTALT 880 (897)
T ss_pred hccCCCHHHHHHHHHHHh
Confidence 554333455555555544
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.95 E-value=5.9e+02 Score=31.08 Aligned_cols=82 Identities=13% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCc-CC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLE-PN-SKHYGCMVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACK 606 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~ 606 (798)
|..+++.+...+..+++.++-..+++..+.. |. ..+++++.+.....|.+-+|.+.+-+-+.. ......+.|+....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4455555555566666666655555532111 11 345556666666666666666665554211 11223444555544
Q ss_pred HcCCh
Q 003746 607 KHGDH 611 (798)
Q Consensus 607 ~~g~~ 611 (798)
..|.+
T Consensus 1066 ecg~l 1070 (1480)
T KOG4521|consen 1066 ECGEL 1070 (1480)
T ss_pred hccch
Confidence 44443
No 399
>PF15469 Sec5: Exocyst complex component Sec5
Probab=46.92 E-value=2.4e+02 Score=26.21 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
...++..++.+.+++++|+...++..|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456677777788888877655555443
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.18 E-value=1.7e+02 Score=32.29 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH-hcCCHHHHHHHHHhC-CCCC--CHH
Q 003746 523 VTPNEITFVGVLGACRHM--GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG-RAGMLKEAEELIESM-PMSP--DVA 596 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~ 596 (798)
--|+..+.-.++.-...- ..-+-|-.++..|.+ .+.|--...| +..+|- -.|+...|...+..+ ...| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 356666665555443322 223445556655532 3334323322 334444 468899999988776 3333 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
....|.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|++.++...+...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 4556777777888888899999999998888889999999999999999999999988766443
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.13 E-value=69 Score=24.96 Aligned_cols=47 Identities=9% Similarity=0.000 Sum_probs=33.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHF 550 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 550 (798)
...+.++|+..|+...+.-..|.. .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888887775433332 36777888999999888877664
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.00 E-value=5.2e+02 Score=29.72 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=12.9
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 003746 604 ACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~ 622 (798)
.+...|+.++|....++..
T Consensus 586 ~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 586 SYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHcCcHHHHHHHHHHHH
Confidence 3556688888777776654
No 403
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.38 E-value=2.7e+02 Score=26.26 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=44.7
Q ss_pred HhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcch--HHHHHHHHHHcCChHHH
Q 003746 436 CTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSS--WNALIIGFAMNGLADKS 511 (798)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A 511 (798)
....++++.|...+...+...-+. ...+--.|.......|.+|+|...++...+++-.+ -..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 344555555555555444321111 01111224445556677777777776666554222 22223456666777777
Q ss_pred HHHHHHHHHCC
Q 003746 512 LEMFSEMKKSG 522 (798)
Q Consensus 512 ~~l~~~m~~~g 522 (798)
..-|++..+.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 77777666654
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.21 E-value=4.3e+02 Score=28.56 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=32.5
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003746 494 SWNALIIGFAM---NGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG 541 (798)
Q Consensus 494 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 541 (798)
.+..+++++.+ .++.+.|+..+..|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555555555 4788899999999999988887665555555544433
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.13 E-value=60 Score=30.64 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 590 PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 590 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
...|+..++..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3457888888888888888888888888888888877
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.06 E-value=1.2e+02 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH-------hcCCCCcchHH----HHHHHHHhcCChhHHHHHHHHH
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLV-------ELQPDHDGFHV----LLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 655 (798)
.+..|..++...|++++++...++++ +++.+.-..|+ .-+.++...|+.++|.+.|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34445555555555555555555444 34444433333 3345567788899988888654
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.95 E-value=1.2e+02 Score=25.36 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=31.0
Q ss_pred CHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 243 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
++++.++.+.+ ..-|..|+.-|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555532 34689999999999999999999999877
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.85 E-value=1.6e+02 Score=23.58 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=29.2
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 512 (798)
..|+.+.|.+++..++ ++...+...++++...|...-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 77778888888887777665554
No 409
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.44 E-value=3.3e+02 Score=30.11 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcC
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTE 488 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~ 488 (798)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888999999999988886
No 410
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.77 E-value=4.4e+02 Score=27.95 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHH----HHHHHHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATW----GALLGACK 606 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~----~~l~~~~~ 606 (798)
+...|+...-..++....+...+..| ....|+|++.|...+.++.|..+..+...+.. ..-| ..+.....
T Consensus 179 ~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka 258 (493)
T KOG2581|consen 179 YELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA 258 (493)
T ss_pred HHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH
Confidence 34445544444444444333223322 33455666666666667777666666532110 0011 12223334
Q ss_pred HcCChhHHHHHHHHHHhcCCC
Q 003746 607 KHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.++++..|.+.+-+++...|+
T Consensus 259 iqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 259 IQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhcchhHHHHHHHHHHHhCcc
Confidence 455666666666555555543
No 411
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.06 E-value=1.2e+03 Score=32.76 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHH---HHHHHhc-CcHHHHHHHHHHHHH-hCCCcCCcchHHHHHH
Q 003746 500 IGFAMNGLADKSLEMFSEMKKSGVTPNEI---TFVGV---LGACRHM-GLVDEGHRHFNSMIQ-EHRLEPNSKHYGCMVD 571 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~l---l~a~~~~-g~~~~a~~~~~~~~~-~~~~~p~~~~~~~l~~ 571 (798)
....+||-++.++..+.++-. .|+.. .|..+ +.++... +....|.++.+..-- .+.-+-..+.++--+.
T Consensus 2744 kvArkh~l~~vcl~~L~~iyt---lp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~ 2820 (3550)
T KOG0889|consen 2744 KVARKHGLPDVCLNQLAKIYT---LPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGM 2820 (3550)
T ss_pred HHHHhcCChHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhH
Confidence 334467777777777777664 23322 22222 2222222 244455555443311 1111223555666666
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 003746 572 LLGRAGMLKEAEELIESM 589 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~ 589 (798)
.+.+.|+.++|...|..+
T Consensus 2821 f~~kL~~~eeAn~~fs~A 2838 (3550)
T KOG0889|consen 2821 FLEKLGKFEEANKAFSAA 2838 (3550)
T ss_pred HHHHhcCcchhHHHHHHH
Confidence 777888888888877765
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.44 E-value=73 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=20.0
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 559 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
..|+..+|..++..+...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666666666666666666666666655
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.43 E-value=1.5e+02 Score=25.63 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 611 HEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 611 ~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
.+.+.++|+.|.. +.-..+.+|...+..+...|++++|.++++.
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3488888888875 6677788899999999999999999999875
No 414
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.15 E-value=2.1e+02 Score=23.89 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=17.7
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 003746 337 HMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAM 386 (798)
Q Consensus 337 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (798)
..+.+.|++++|...=.....||...|-+|-.. +.|--+++...+.++
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 334444555555222223344444444443221 334444444444433
No 415
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.69 E-value=1.9e+02 Score=33.62 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 003746 201 NSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALV 280 (798)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (798)
.++|.-+.+.|.++-|+...+.=.. -......+|+++.|.+.-.++. |..+|..|+......|+.+-|..
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~t--------RF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm 693 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERT--------RFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEM 693 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcch--------heeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHH
Confidence 3556666677777777766543221 1223456789999988877665 55689999999999999999999
Q ss_pred HHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh
Q 003746 281 LFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDL 360 (798)
Q Consensus 281 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 360 (798)
.|++.+.- ..+--.|.-.|+.+.-.++...+..++ | .+..-...+| .|++++-.++++.+...+.
T Consensus 694 ~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D-~~~~~qnalY--l~dv~ervkIl~n~g~~~l 758 (1202)
T KOG0292|consen 694 CYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---D-ATGQFQNALY--LGDVKERVKILENGGQLPL 758 (1202)
T ss_pred HHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---h-hHHHHHHHHH--hccHHHHHHHHHhcCcccH
Confidence 99887652 222122344577777666655554321 1 1112223334 3788888888877655544
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003746 361 ISWNSMISGYLKCGSVEKARALFDAMI 387 (798)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (798)
.-.++. ..|.-+.|.++.++..
T Consensus 759 aylta~-----~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 759 AYLTAA-----AHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHh-----hcCcHHHHHHHHHhhc
Confidence 333332 4566677777776653
No 416
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.60 E-value=2.1e+02 Score=25.53 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCC-----CCCCcccHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHH
Q 003746 99 FNTMMRAYIQRNVPQQAICLYKLMLNNN-----VGVDNYTYPLLAQASALRLS-VFEGKLIHDHVLKAGFDSDVYVNNTL 172 (798)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (798)
.|+++.-.+..+++...+.+++.+.... -..+..+|.+++++.++... --.+..++..+.+.+.+.++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555566666555555553211 02345566677776655554 44566666666666666666666666
Q ss_pred HHHHHh
Q 003746 173 INMYAV 178 (798)
Q Consensus 173 i~~y~~ 178 (798)
+....+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665433
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.36 E-value=92 Score=25.25 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
.-.+.......|+.++|...+++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334555667789999999999988875
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.34 E-value=37 Score=29.46 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.6
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~ 141 (798)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456777899999999999998885 56666654
No 419
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.74 E-value=35 Score=39.18 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=52.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 612 (798)
+|..+.+.|..+-|+.+.+.=..++ ++...+|+++.|++.-.+.. |..+|..|+.....+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 3444556666666666554332222 23456888998888887763 6778999998888889999
Q ss_pred HHHHHHHHHHh
Q 003746 613 MGERVGRKLVE 623 (798)
Q Consensus 613 ~A~~~~~~~~~ 623 (798)
.|+..|++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 88888887654
No 420
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.42 E-value=4.4e+02 Score=27.04 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=57.7
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHhhcCCC--------CcchHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFHGTEEK--------GVSSWNA-LIIGFAMNGLADKSLEMFSEMKKSGVTPNEI---- 528 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 528 (798)
...-....-|++-|+.+.|.+.+++..++ |++.+.. |.-.|..+.-..+-++..+.+.+.|-.-+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34445667788999999998888876554 3333322 2233444555667777777788877665543
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
+|-.+- |....++.+|-.+|-..+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444433 33445788888887776553
No 421
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.08 E-value=4.5e+02 Score=27.01 Aligned_cols=84 Identities=19% Similarity=0.034 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHHHHhCCC---cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRL---EPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERV 617 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 617 (798)
+-.+++.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+.-.++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888889888763111 3345566666777778888777666666665456788888899999888999988889
Q ss_pred HHHHHhc
Q 003746 618 GRKLVEL 624 (798)
Q Consensus 618 ~~~~~~~ 624 (798)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9988873
No 422
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=38.71 E-value=8e+02 Score=29.84 Aligned_cols=93 Identities=8% Similarity=0.018 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003746 525 PNEITFVGVLGACRHMGLVDE-GHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLG 603 (798)
Q Consensus 525 p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 603 (798)
+|...-.....++...+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+-..+|..+-...+.
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~ 829 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAAR 829 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHH
Confidence 344444444444444443221 2233333322 24555555666666666654444333333322345445555555
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 003746 604 ACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~ 622 (798)
++...+. +++...+..++
T Consensus 830 aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 830 ALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred HHHhccc-cchHHHHHHHh
Confidence 5555543 33444444444
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.79 E-value=1.1e+02 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 586 IESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 586 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
|...+++|. ..+++.-+..+.+++|+..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333355554 3467777888889999999999999999999865
No 424
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=1.9e+02 Score=28.86 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.+=.++.+.++++.|.+..++.+.++|+++.-..--+-+|.+.|...-|.+-+....++-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3444567788899999999999999999988777777889999999999988888766543
No 425
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.63 E-value=4.1e+02 Score=26.09 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=36.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cccchhHHHHHHHHHHH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT-HLVALDQGKWIHAYIRK 454 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~ 454 (798)
++...-+.|++++++..++++...+...+..-.+.+-.+|- ..|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 56667788999999999999888876666655555555552 33555556666655543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.83 E-value=1e+02 Score=28.58 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=24.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
.+..|.+.|.+++|.+++++.++ +|++...-.-|..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 34567777888888888888777 66665544444433
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.61 E-value=1e+02 Score=21.36 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH
Q 003746 269 YEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302 (798)
Q Consensus 269 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 302 (798)
..+.|-..++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3556777777778888877777777666665554
No 428
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.33 E-value=2e+02 Score=24.86 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
|..+-+..+....+-|+....-..|.||.+.+++..|.++|+-+..+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455566667778999999999999999999999999999988654 334334565554
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.31 E-value=40 Score=29.27 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=26.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
.....|.-.+|..+|++|++.|-.||. |..|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344557777899999999999999985 66666544
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=3.5e+02 Score=30.09 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCcC-------
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPNE------------ITFVGVLGACRHMGLVDEGHRHFNSMIQEH--RLEP------- 561 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~~------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p------- 561 (798)
....-+++|...|.-.... ..|+. .+...+...|..+|+.+-|..+.++.+=.+ -+.|
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 4455677777777766553 23332 244555566777777777777766543110 0111
Q ss_pred ----------CcchHHHH---HHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-HcCChhHHHHHHHHHHhc
Q 003746 562 ----------NSKHYGCM---VDLLGRAGMLKEAEELIESM-PMSP--DVATWGALLGACK-KHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 562 ----------~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 624 (798)
+...|-+| +..+.+.|.+..|.++-+-+ .+.| |+.....+|..|+ +..+++--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 12223333 33455677777777766554 3333 4555566666663 445666666666555332
Q ss_pred C----CCCcchHHHHHHHHHhcCC
Q 003746 625 Q----PDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 625 ~----p~~~~~~~~l~~~~~~~g~ 644 (798)
+ -.+-.+-+.|+..|.+...
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCC
Confidence 1 2333333445555555443
No 431
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.54 E-value=75 Score=31.69 Aligned_cols=47 Identities=21% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 003746 139 QASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAAR 186 (798)
Q Consensus 139 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (798)
+.|...|.+.+|.++++.+++.. +.+...+-.|+..|+..|+--.|.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhh
Confidence 34445555555555555555544 444455555555555555533333
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.09 E-value=80 Score=21.85 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=17.1
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcccHHHHH
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDNYTYPLLA 138 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll 138 (798)
.+.|...++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555566665555555555544444
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.02 E-value=55 Score=32.70 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=8.9
Q ss_pred hcCcHHHHHHHHHHHH
Q 003746 539 HMGLVDEGHRHFNSMI 554 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~ 554 (798)
+.|+.++|..+|+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAl 143 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL 143 (472)
T ss_pred hccchHHHHHHHHHHH
Confidence 4555555555555554
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.00 E-value=78 Score=25.14 Aligned_cols=58 Identities=9% Similarity=0.260 Sum_probs=35.3
Q ss_pred HHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh
Q 003746 219 IYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYE 276 (798)
Q Consensus 219 ~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 276 (798)
+++.+.+.++.+....-...+...+.+.|.++++.++.+...+|.++..++...|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3333444444444444444455566777777777777777777777777776666543
No 435
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.77 E-value=24 Score=24.73 Aligned_cols=19 Identities=42% Similarity=0.784 Sum_probs=13.3
Q ss_pred EcccccCcchhhHHHHHhhh
Q 003746 752 MKNLRICNDCHTAAKFISRA 771 (798)
Q Consensus 752 ~~nl~~~~~~~~~~~~~s~~ 771 (798)
-..-|-|.|||.|. |+.+.
T Consensus 10 PaesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 10 PAESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred cCCCCCchhhHHHH-HHHHH
Confidence 34578899999765 66543
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.34 E-value=6e+02 Score=26.82 Aligned_cols=56 Identities=7% Similarity=-0.069 Sum_probs=35.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cccchhHHHHHHHHH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT-HLVALDQGKWIHAYI 452 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~~~~~~a~~~~~~~ 452 (798)
.|..+.+.|.+.-|+++.+-+..-+..-|+......|+.++ +.+.++--.++.+..
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 35567778888888888887777654446666666666654 445555555555443
No 437
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.30 E-value=4.5e+02 Score=25.35 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
+.+..++.+.+.+...+|+.+.++-.+. +|.. -+-..++..++-.|++++|..-++-..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566777778888888887776664 4444 345556677888888888887776653
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.96 E-value=4.7e+02 Score=25.44 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=46.7
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchHHHHHHHHHhhcCCHHHHHHHHhcCCCC
Q 003746 180 GDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPER--NIIASNSMIVLFGRKGNVAEACRLFKEMPKK 257 (798)
Q Consensus 180 g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 257 (798)
+++++|.+.+-+-... ..-..-++..+...|+...|+.+++.+..+ +......++.. ..+|.+.+|..+-+...++
T Consensus 92 ~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~ 169 (226)
T PF13934_consen 92 GDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE 169 (226)
T ss_pred HhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh
Confidence 5566666666433211 111123666666677777777777665543 22222333333 4456677776666655543
Q ss_pred C-cccHHHHHHHHHh
Q 003746 258 D-LVSWSALISCYEQ 271 (798)
Q Consensus 258 ~-~~~~~~li~~~~~ 271 (798)
. ...|..++..+..
T Consensus 170 ~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 170 LRRRLFEQLLEHCLE 184 (226)
T ss_pred hhHHHHHHHHHHHHH
Confidence 2 2355555555543
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.48 E-value=65 Score=32.42 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=32.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHH
Q 003746 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVS 299 (798)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 299 (798)
-||..|...++.||+++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 478999999999999999999999999887655555543
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.41 E-value=3.2e+02 Score=29.11 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCcc--hHHHHHHHHH--hcCCHHHHHHHHHhC
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNSK--HYGCMVDLLG--RAGMLKEAEELIESM 589 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 589 (798)
...+.+++..|.++|+.+..+ ++++.. .|..+..+|. ...++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345778999999999999874 555544 5566666665 466889999999987
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.17 E-value=4.3e+02 Score=24.81 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCC---------
Q 003746 387 IEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGL--------- 457 (798)
Q Consensus 387 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--------- 457 (798)
.++..+.|......-++.-+.+++-+.|- ..+=.+++-.|.+.-++.+++.+++.+-+..+
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~ 172 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLT 172 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 33344445555555555544444333221 11223445556666667777776666654322
Q ss_pred -----CCcHHHHhHHHhhHHhcCCHHHHHHHHhh
Q 003746 458 -----KINSILGTTLIDMYMKLGCVDNALEVFHG 486 (798)
Q Consensus 458 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (798)
.+.-.+.|.....+.+.|.+|.|..++++
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23345566677778888888888887763
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.08 E-value=87 Score=30.13 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..+.++.+.+.+++.+++++-|+....+..++..-.+.|+.+.|.+-+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999998877554
No 443
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=31.76 E-value=60 Score=25.19 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCccc
Q 003746 688 INEIDNMLDEMAKKLKLEGYAPDTLEV 714 (798)
Q Consensus 688 ~~~~~~~l~~l~~~~~~~g~~~d~~~~ 714 (798)
..+++..+++...+++..|+.||-..+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456778889999999999999996544
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.02 E-value=6.9e+02 Score=26.79 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=35.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHccCCCCCcc--hHHHHHHHHHhCCCHHHHHH
Q 003746 143 LRLSVFEGKLIHDHVLKAGFDSDVYV--NNTLINMYAVCGDLSAARKLFDESPVLDLV--SWNSILAGYVNADNVEEAKF 218 (798)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~d~~--~~~~li~~~~~~g~~~~A~~ 218 (798)
..|+.+. .+.+++.|..++... ..+.+...+..|+.+-+..+++....++.. ...+.+...++.|+.+.+..
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 4455543 334445565554422 344455556677776666666554333221 11122333444455544444
Q ss_pred HHh
Q 003746 219 IYN 221 (798)
Q Consensus 219 ~~~ 221 (798)
+++
T Consensus 87 Ll~ 89 (413)
T PHA02875 87 LLD 89 (413)
T ss_pred HHH
Confidence 443
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.99 E-value=68 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
|..-.-.+|.||.+.|++++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455678999999999999999888764
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=5.4e+02 Score=26.47 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH
Q 003746 523 VTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPDV 595 (798)
Q Consensus 523 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 595 (798)
++-|..-++.+..+= ...+++--+..+...+..|-.--....-....-|++.|+-+.|.+.+.+. +.+-|.
T Consensus 66 i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 344444445444321 22344444444455443332222455666778899999999999988764 444555
Q ss_pred HHHHHHHH-HHHHcCChhHHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 596 ATWGALLG-ACKKHGDHEMGERVGRKLVELQPD-----HDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 596 ~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+.+..-+. .|..+.=..+-++..+.+++..-| ---+|..+ -+....++.+|..+|-..
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHH
Confidence 54433222 222233333444444444554332 11122222 233445666666666433
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.75 E-value=2.6e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc
Q 003746 409 ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN 455 (798)
Q Consensus 409 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 455 (798)
|..+-+.......+.|++......|++|-+.+++..|.++++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444555666778999999999999999999999999999887643
No 448
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.41 E-value=93 Score=31.38 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGV 533 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 533 (798)
-||..|..-.+.|+.++|+.+++|..+.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3678888888888899999999998888876555555443
No 449
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=5.8e+02 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=26.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHH
Q 003746 265 LISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVV 298 (798)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 298 (798)
+.+-.++.+++++|+..|.+....|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3445567788999999999999998887776653
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.14 E-value=6.6e+02 Score=25.98 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHhCCCcCCc-chHHHHHHHHHhcCCH
Q 003746 507 LADKSLEMFSEMKKSGVTPNEITFVGVLGACRH------MGLVDEGHRHFNSMIQEHRLEPNS-KHYGCMVDLLGRAGML 579 (798)
Q Consensus 507 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 579 (798)
..++++.++++....+. |........+.+|-. .-++..-..+|+-+.. +.|++ .+.|--+ ++++.--.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhhH
Confidence 35678888888877764 888888777766632 2356666677776643 56663 3444333 33444446
Q ss_pred HHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 580 KEAEELIESMPMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 580 ~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
+.++..++...-.| -...|..=...+.+.|+.++|...|++++.+.++...-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 66677777663332 12234445566788899999999999999988876543
No 451
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.51 E-value=9.1e+02 Score=27.41 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003746 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPM 591 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 591 (798)
....+++...-.-.+.....-++..|.+.|..+.+.++.+.+-.+ +.+.|++-+|+..+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~----------------~~~~~~~g~AL~~~~ra~d 453 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR----------------LLKEGRYGEALSWFIRAGD 453 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHCCCHHHHHHHHHHCCC
Confidence 334444444323334556677788888888888888887766332 3345566666666665531
Q ss_pred C--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhCCCccCCc
Q 003746 592 S--PDVATWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIH--ASKGRWDDVLEVRGMMVRRGVVKIPG 665 (798)
Q Consensus 592 ~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~ 665 (798)
. -+..+|. ++..|..+|... ...+.+.+.. .-.+.-.+|..+...| .+.|++.+|.+.+-.+...... |.
T Consensus 454 ~~~v~~i~~~-ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~--Pk 529 (566)
T PF07575_consen 454 YSLVTRIADR-LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIA--PK 529 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCC--cH
Confidence 1 1233332 445555554322 1112211110 0011223333343333 3457888887766555544432 33
Q ss_pred cceEEE
Q 003746 666 CSMIEA 671 (798)
Q Consensus 666 ~s~i~~ 671 (798)
.-|..+
T Consensus 530 ~f~~~L 535 (566)
T PF07575_consen 530 SFWPLL 535 (566)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 344443
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.42 E-value=6.8e+02 Score=26.58 Aligned_cols=25 Identities=0% Similarity=-0.323 Sum_probs=13.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPN 526 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~ 526 (798)
+...+++..|.++|+++....+.|.
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChh
Confidence 4455566666666666655543333
No 453
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.30 E-value=3.7e+02 Score=23.28 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATW-GALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
..+-.++..++.=.|..++|.++++..+.-++-... ..++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444556666666677777777777766544443333 3466666666655555544443
No 454
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.70 E-value=4.5e+02 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=9.9
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 003746 334 ALIHMYSSCGEITTAEKLFD 353 (798)
Q Consensus 334 ~li~~y~~~g~~~~A~~~~~ 353 (798)
+|..++...|++..+..+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~ 52 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLK 52 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHH
Confidence 45555554444444444444
No 455
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.47 E-value=6.3e+02 Score=26.13 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=30.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCC--cCCcchH--HHHHHHHHhcCCHHHHHHHHHhC
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRL--EPNSKHY--GCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
...+.++.++|.++++++.++... +|+...| ..+...+...|+++++.+.+++.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 334445777777777777654221 3343333 34455566677777766665543
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.22 E-value=1.4e+02 Score=22.01 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
..++.++...|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.21 E-value=6.4e+02 Score=25.16 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=41.3
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR 538 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 538 (798)
-++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46677778888899999998888776433322222221122211112211111 111222233 345
Q ss_pred hcCcHHHHHHHHHHHHHh
Q 003746 539 HMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~ 556 (798)
-.+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877776654
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.08 E-value=6.6e+02 Score=25.29 Aligned_cols=115 Identities=12% Similarity=-0.110 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG-------MLKEAEELIESMPMSPDVATWGALLGACKK----HGD 610 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 610 (798)
+..+|..+|+++.+ .|..+.......+...|...+ +...|...+.++-..-+......|...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 55566666665543 233222122233333333321 223566666665212233333334333322 337
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCC
Q 003746 611 HEMGERVGRKLVELQPDHDGFHVLLSNIHASKG---------------RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 611 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~ 660 (798)
.++|...|+++-+... ......++ ++...| ++..|...+...-..+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7788888888877766 44455555 444444 56666666666655543
No 459
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.03 E-value=4.4e+02 Score=25.69 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=16.0
Q ss_pred cCChhHHHHHHHHHHhcCCCC
Q 003746 608 HGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~ 628 (798)
.++...|...++++++++|+-
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCC
Confidence 356678888888888888764
No 460
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.48 E-value=4.3e+02 Score=22.92 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 003746 580 KEAEELIESM-PMSPDVA---TWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 580 ~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 653 (798)
+++.+.|... ..+.|+. +|-..+..| +...++|..|.. +.-..+.+|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443 2233433 455555443 335667777764 556667788888999999999999999886
No 461
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=26.43 E-value=1.5e+02 Score=31.35 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
|..+|.+.++.+.|+....+.+-++|.....+..-+-++....+|.+|.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544333333333333334444443
No 462
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.73 E-value=4.5e+02 Score=24.92 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS-NIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANG 673 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~ 673 (798)
....+.++..|...||++.|-++|--++...+-|....=.+| .++.+.+.-....+.++.|...-.....-........
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~ 120 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhc
Q ss_pred EEEEEEeCCCCC-c---------------ChHHHHHHHHHHHHHHHHcCCCC
Q 003746 674 IIHEFLAGDRTH-P---------------QINEIDNMLDEMAKKLKLEGYAP 709 (798)
Q Consensus 674 ~~~~~~~~~~~~-~---------------~~~~~~~~l~~l~~~~~~~g~~~ 709 (798)
..+.|..|.+.| | ......+.++++.++|.+.-..|
T Consensus 121 ~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~P 172 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSP 172 (199)
T ss_pred ccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCC
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.58 E-value=8.7e+02 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003746 394 WSTMISGYAQ---HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH 438 (798)
Q Consensus 394 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 438 (798)
+..++.++.+ .++++.|+..+..|...|..|....-..+..++-.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444555444 47899999999999999988876655555544433
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.72 E-value=29 Score=35.31 Aligned_cols=99 Identities=7% Similarity=0.012 Sum_probs=69.1
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTH 685 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~ 685 (798)
...|+++.|++.+..++++.|.....|.--++++.+.+++..|++-.....+.+.....++-| .
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf----------------r 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF----------------R 188 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch----------------h
Confidence 356889999999999999999999999999999999999999998888776655433333222 1
Q ss_pred cChHHHHHHHHHH---HHHHHHcCCCCCCcccccccCh
Q 003746 686 PQINEIDNMLDEM---AKKLKLEGYAPDTLEVAFDIDQ 720 (798)
Q Consensus 686 ~~~~~~~~~l~~l---~~~~~~~g~~~d~~~~~~~~~~ 720 (798)
......+...++. +..--+.+|.++...|+..+..
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 2222333333322 2333456888888888765543
No 465
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=24.62 E-value=47 Score=18.08 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=9.7
Q ss_pred CcchhhHHHHHhh
Q 003746 758 CNDCHTAAKFISR 770 (798)
Q Consensus 758 ~~~~~~~~~~~s~ 770 (798)
-...|+++|+||.
T Consensus 9 ~qglhe~ikli~n 21 (23)
T PF08225_consen 9 FQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHhc
Confidence 3467889998874
No 466
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=24.50 E-value=9.7e+02 Score=26.35 Aligned_cols=431 Identities=7% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003746 95 NGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS-VFEGKLIHDHVLKAGFDSDVYVNNTLI 173 (798)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (798)
|+..|..-|.-+-+.+.+.+.-.+|.+|.... +.++..|.....=.-..+. ++.|+.++...++.. +.++..|-...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHccCCCCCc--------chHHHHHHHHHhCCCHHHHHH--HHhhCCCCCchHHHHHHHHHhhcCC
Q 003746 174 NMYAVCGDLSAARKLFDESPVLDL--------VSWNSILAGYVNADNVEEAKF--IYNKMPERNIIASNSMIVLFGRKGN 243 (798)
Q Consensus 174 ~~y~~~g~~~~A~~~f~~~~~~d~--------~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~li~~y~~~g~ 243 (798)
++-...-..-.+++..-.....+. ..|+......-...-...-.+ +++........--+.+=.++.+.-+
T Consensus 182 rmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~ 261 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPD 261 (568)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCC
Q ss_pred -----HHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHH
Q 003746 244 -----VAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318 (798)
Q Consensus 244 -----~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 318 (798)
-+-|.+.++-...-+...+..+-.++.-.-+.+....+|++..+ ..|+...+...|..|-..-....+..+..
T Consensus 262 np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h 339 (568)
T KOG2396|consen 262 NPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILH 339 (568)
T ss_pred CCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 003746 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398 (798)
Q Consensus 319 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 398 (798)
.+. ..+.+.........-+....
T Consensus 340 ~~~---------------------------------------------------------~~~~~~~~~~l~~~~~~~ys 362 (568)
T KOG2396|consen 340 TMC---------------------------------------------------------VFRKAHELKLLSECLYKQYS 362 (568)
T ss_pred HHH---------------------------------------------------------HHHHHHHhcccccchHHHHH
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--cchhHHHHHHHHHHHcCCCCcHHHHhHHH-hhHHhcC
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHL--VALDQGKWIHAYIRKNGLKINSILGTTLI-DMYMKLG 475 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g 475 (798)
..+..-....++...-..+...+++-|...+..-+....+. .---.-...+....+.-..+....+++.. ..+....
T Consensus 363 ~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~ 442 (568)
T KOG2396|consen 363 VLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQED 442 (568)
T ss_pred HHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHH
Q ss_pred CHHHHHHHHhhcCCCCcchH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCcHHHHHHHHHH
Q 003746 476 CVDNALEVFHGTEEKGVSSW-NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVL--GACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~ 552 (798)
..+.....+..+..+++.++ +..+.-+-+.|-.++|...|..+... .+|+..-|..++ ..-..+-++.-+.++++.
T Consensus 443 ~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~ 521 (568)
T KOG2396|consen 443 TLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDR 521 (568)
T ss_pred HHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHH
Q ss_pred HHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 553 MIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 553 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|...+| .|+..|-.....=...|+.+.+-.++.++
T Consensus 522 a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 522 ALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.97 E-value=3.4e+02 Score=27.64 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 234 MIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 234 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
++..+.+.+++.+..+.+..+. .+..-...+..+...|+|..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555554442 344455667777888999999998887765
No 468
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.97 E-value=4.2e+02 Score=29.36 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=13.8
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCC
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMP 255 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~ 255 (798)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34555666666666666666554
No 469
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.81 E-value=1.6e+02 Score=23.69 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 003746 227 NIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEM 274 (798)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 274 (798)
++.+-...-...+...+.+.+.++++.++.+...+|..+..++-..|.
T Consensus 33 gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 33 DILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 333333333344444566777777777777777777777777755443
No 470
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.75 E-value=8.4e+02 Score=25.38 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADK-SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
+.|.++|.++-+.+..+-+.+..-......++..++-...-.+. +..+++++... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 44555555555544444444444333344444444433333333 23333333332 677777777777776655555
Q ss_pred HHHHHHHHHH
Q 003746 546 GHRHFNSMIQ 555 (798)
Q Consensus 546 a~~~~~~~~~ 555 (798)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5444555443
No 471
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.51 E-value=1.3e+03 Score=27.43 Aligned_cols=276 Identities=12% Similarity=0.091 Sum_probs=127.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 003746 335 LIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 335 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 414 (798)
+=..|...|+++.|.++-+..+..-...+-.-...|.+.+++..|-+++-++ ..++..+.--|....+.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHH
Confidence 3456777888888887765441111123333345566777888888888777 344555555555665555 55544
Q ss_pred HHHHHcCCCCCHHHHHHHH-----HHH-hcccchh----HHHHHHH--------HHHH-cCCCCcHHHHhHHHhhHHhcC
Q 003746 415 MEMQHHGIRPDEATLVSVI-----SAC-THLVALD----QGKWIHA--------YIRK-NGLKINSILGTTLIDMYMKLG 475 (798)
Q Consensus 415 ~~m~~~g~~pd~~t~~~ll-----~a~-~~~~~~~----~a~~~~~--------~~~~-~~~~~~~~~~~~li~~~~~~g 475 (798)
-.=+-..++|...+-..+| ..+ .+.++++ ++..-++ ++.+ .....+.....+........|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 3333333555444333322 222 2233332 2211111 1111 111112222233334444555
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH--------------------------HCCCCCCHHH
Q 003746 476 CVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMK--------------------------KSGVTPNEIT 529 (798)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------~~g~~p~~~t 529 (798)
+.+....+-.-|. -|..++.-+.++|.+++|++++..-. .....| ..-
T Consensus 519 ~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~-~~l 592 (911)
T KOG2034|consen 519 RQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLDP-NRL 592 (911)
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccCc-hhh
Confidence 5555544433222 24455666677777777776654311 000111 111
Q ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 003746 530 FVGVLGACRHM---GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPD--VATWGALLGA 604 (798)
Q Consensus 530 ~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~ 604 (798)
...++..+.+. -....+..+++-.+...+ .-+...+|.++.+|++.-+-+. .-.++..+..++ ..-...-++.
T Consensus 593 i~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~-~~~~~ihn~ll~lya~~~~~~l-l~~le~~~~~~~~~~YDl~~alRl 670 (911)
T KOG2034|consen 593 IPPILSYFSNWHSEYEENQAIRYLEFCIEVLG-MTNPAIHNSLLHLYAKHERDDL-LLYLEIIKFMKSRVHYDLDYALRL 670 (911)
T ss_pred hHHHHHHHhcCCccccHHHHHHHHHHHHHhcc-CcCHHHHHHHHHHhhcCCccch-HHHHHHHhhccccceecHHHHHHH
Confidence 23334444433 234455555555433222 2356778888888876554333 223332221122 2222445566
Q ss_pred HHHcCC------hhHHHHHHHHHHh
Q 003746 605 CKKHGD------HEMGERVGRKLVE 623 (798)
Q Consensus 605 ~~~~g~------~~~A~~~~~~~~~ 623 (798)
|.+.+. .....++++.+.+
T Consensus 671 c~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 671 CLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred HHHhCccceeeeHHHHHHHHHHHHH
Confidence 666553 2334444555543
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=7.7e+02 Score=24.82 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=71.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhcccchhHHHHHHHH----HHHcCCCCcHHHHhHHHhh
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEAT-------LVSVISACTHLVALDQGKWIHAY----IRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~a~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~ 470 (798)
.+.+++++|+..+.+....|+..|..+ ...+...+...|+...-.+.... |....-+....+..+|++.
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 445566666666666666665554433 33344445555544333222211 1111112233444455555
Q ss_pred HHhc-CCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHH-H
Q 003746 471 YMKL-GCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMF----SEMKKSGVTPNEITFVGVL-G 535 (798)
Q Consensus 471 ~~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll-~ 535 (798)
+... ..++.-.++.....+. . ...-.-+|..+.+.|.+.+|+.+. .++.+..-+|+-++...+= .
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESK 173 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESK 173 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHH
Confidence 5432 3344444444433321 0 112234677888888888888754 4455555566665543332 3
Q ss_pred HHHhcCcHHHHHHHH
Q 003746 536 ACRHMGLVDEGHRHF 550 (798)
Q Consensus 536 a~~~~g~~~~a~~~~ 550 (798)
+|-...++.++..-+
T Consensus 174 vyh~irnv~KskaSL 188 (421)
T COG5159 174 VYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHhhhhhhhHH
Confidence 444444444444433
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.34 E-value=3.5e+02 Score=29.00 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcCC-----------CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 232 NSMIVLFGRKGNVAEACRLFKEMP-----------KKDLVSWSALISCYEQNEMYEEALVLFMNMI 286 (798)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 286 (798)
-.|+..++-.|++..|.++++.+. .-.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777766553 2245567777778888899999999987764
No 474
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.92 E-value=2.4e+02 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSE 409 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 409 (798)
...+.+.+.++++.++.++..+|..+..++...|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34456777777777777777777777777766665443
No 475
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.44 E-value=5.1e+02 Score=22.38 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
++.++|..|...|+--... -|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544433322 23333344444445555544443
No 476
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.42 E-value=1e+03 Score=25.75 Aligned_cols=175 Identities=9% Similarity=-0.066 Sum_probs=102.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003746 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD 181 (798)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (798)
-|.++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+....+..+.+.+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCc
Confidence 377777777 56777766666432 33344444444444333222222222222 25666688888888888888
Q ss_pred hHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCccc
Q 003746 182 LSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVS 261 (798)
Q Consensus 182 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 261 (798)
.+....+..-....++..-.+.+.++...+. +-...+..-+...+..+...-+..+++.|..+..-.+-.-....|...
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEV 194 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHH
Confidence 7777776666666666655566666655432 212222333345677777777777777776544444444444567777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 262 WSALISCYEQNEMYEEALVLFMNMI 286 (798)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~l~~~m~ 286 (798)
-..-+.+....|. ++|...+....
T Consensus 195 R~aA~~al~~lG~-~~A~~~l~~~~ 218 (410)
T TIGR02270 195 RFAALEAGLLAGS-RLAWGVCRRFQ 218 (410)
T ss_pred HHHHHHHHHHcCC-HhHHHHHHHHH
Confidence 6777777788887 66766665533
No 477
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=3.7e+02 Score=27.00 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
....+..+.+-|++.++.+.+.+...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3566777888899999999888887654
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.34 E-value=3.7e+02 Score=30.37 Aligned_cols=46 Identities=11% Similarity=-0.040 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCc
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSG--VTPNEITFVGVLGACRHMGL 542 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~ 542 (798)
+|..+|..+|++..+.++++.....+ -+-=...++..+....+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 56666666666666666666665431 11111244555555555554
No 479
>PRK12356 glutaminase; Reviewed
Probab=22.00 E-value=8.3e+02 Score=25.20 Aligned_cols=110 Identities=5% Similarity=0.047 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 478 DNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+.-.+.++++..+++..=..+...-...|+-..|+..| |++.|.-++. .+.......|+-....++--.+..-+ .
T Consensus 140 ~~il~~~~~~ag~~l~~de~v~~SE~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~L-A 216 (319)
T PRK12356 140 QRILDGQQRFAGRELALSDEVYQSEQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATL-A 216 (319)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHH-H
Confidence 33344444444443332233333344455555555544 5555544322 23444444455444444433333333 3
Q ss_pred hCCCcCC-------cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003746 556 EHRLEPN-------SKHYGCMVDLLGRAGMLKEAEELIESMP 590 (798)
Q Consensus 556 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 590 (798)
..|+.|. ..+-..+......+|.+|.+-++.-+.+
T Consensus 217 n~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VG 258 (319)
T PRK12356 217 AGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVG 258 (319)
T ss_pred cCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhC
Confidence 3466652 2334455566677888888888777664
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.99 E-value=4.8e+02 Score=21.92 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=51.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhh
Q 003746 143 LRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNK 222 (798)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (798)
.....++|..|.+.+...+ .....+--.-+..+.+.|++++|+..=.....||...|-++-.+ +.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 3446778888888888776 34445555556677888999999665566668888888776543 56666666666665
Q ss_pred CCC
Q 003746 223 MPE 225 (798)
Q Consensus 223 m~~ 225 (798)
+..
T Consensus 95 la~ 97 (116)
T PF09477_consen 95 LAS 97 (116)
T ss_dssp HCT
T ss_pred HHh
Confidence 543
No 481
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=1.2e+03 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=10.6
Q ss_pred HHhhHHhcCCHHHHHHHH
Q 003746 467 LIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~ 484 (798)
+.+++-..|+.+.|..+.
T Consensus 290 va~~~r~qgD~e~aadLi 307 (665)
T KOG2422|consen 290 VADIFRFQGDREMAADLI 307 (665)
T ss_pred HHHHHHHhcchhhHHHHH
Confidence 345566667766665553
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.66 E-value=3.6e+02 Score=24.07 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccC
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLT 308 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 308 (798)
..--.++..+.+.++.-.|.++|+++.+.+...+..|.-..|..+...|
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344566666666666777777777777665555555544444444433
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.47 E-value=3.5e+02 Score=24.90 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003746 101 TMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141 (798)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~ 141 (798)
.++..+...+.+-.|.++++.+.+.+..++..|-...|..+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 33444444444445555555555444444444433333333
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.39 E-value=3.4e+02 Score=24.97 Aligned_cols=63 Identities=10% Similarity=-0.074 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCc
Q 003746 247 ACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV 309 (798)
Q Consensus 247 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 309 (798)
+.++++...-+....--.++..+...++.-.|.++++++.+.+..++..|.-..|..+...|-
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333443333333334445555555555566677777777776666666665555555544443
No 485
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.32 E-value=9.2e+02 Score=24.92 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 632 HVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+..+......+|-++.|..+++.+.+.+.-
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 334555678889999999999999887663
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.31 E-value=1e+03 Score=25.42 Aligned_cols=166 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhC--CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh---------CCCCch
Q 003746 98 IFNTMMRAYIQRNVPQQAICLYKLMLNN--NVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKA---------GFDSDV 166 (798)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------g~~~~~ 166 (798)
.+.-+..-|...|+++.|++.|.+.+.. ..+--...|..++..-...|++......-..+... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred hHHHHHHHHHHhcCChHHHHHHH----------ccCCCCCcchHHHHHHHHHhCCCHHHHHHH-----HhhCCCCCchHH
Q 003746 167 YVNNTLINMYAVCGDLSAARKLF----------DESPVLDLVSWNSILAGYVNADNVEEAKFI-----YNKMPERNIIAS 231 (798)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~f----------~~~~~~d~~~~~~li~~~~~~g~~~~A~~~-----~~~m~~~~~~~~ 231 (798)
..+..|.+...+ ++..|.+.| .++..|.-++-...+.+++-.++-+--+.+ |+...+..+...
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcCCC---------CCcccHHHHHH
Q 003746 232 NSMIVLFGRKGNVAEACRLFKEMPK---------KDLVSWSALIS 267 (798)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~ 267 (798)
..|...|. +++....++++++.. |.+.+.-.+|.
T Consensus 310 ~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 487
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.29 E-value=7e+02 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=12.5
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003746 640 ASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~ 657 (798)
...|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456777777777777754
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.20 E-value=1e+03 Score=27.10 Aligned_cols=68 Identities=7% Similarity=-0.083 Sum_probs=22.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHH
Q 003746 381 ALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHA 450 (798)
Q Consensus 381 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 450 (798)
.++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-+ ..--|...+.-+.+.++......+-.
T Consensus 395 ~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 395 ELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444434444444455556666666666665554433211 11234444444444444444444333
No 489
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.09 E-value=2.3e+02 Score=23.66 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=9.2
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 003746 397 MISGYAQHDQFSETLSLFMEM 417 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m 417 (798)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555444443
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.02 E-value=4.5e+02 Score=28.19 Aligned_cols=56 Identities=7% Similarity=0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIE-----------KDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 418 (798)
...|++.++-.|++..|.++++.+.- -.+.++--+.-+|.-.+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777666531 133345556667777788888888777653
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.98 E-value=2.6e+02 Score=27.60 Aligned_cols=19 Identities=32% Similarity=0.263 Sum_probs=8.5
Q ss_pred HHHHHHHHcCChhHHHHHH
Q 003746 600 ALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~ 618 (798)
.+..++...|+.+......
T Consensus 223 ~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 223 RLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 3344444445555444443
No 492
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.79 E-value=1.9e+02 Score=31.22 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHH
Q 003746 471 YMKLGCVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 546 (798)
+.+.+.++.|..++.+..+.+ .+.|..-..++.+.+++..|+.=+.+.++. .|... .|.--..+|...+...+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHHHH
Confidence 334455555555555544332 122222234555555555555544444442 23322 233333444444555555
Q ss_pred HHHHHHH
Q 003746 547 HRHFNSM 553 (798)
Q Consensus 547 ~~~~~~~ 553 (798)
+..|+..
T Consensus 92 ~~~l~~~ 98 (476)
T KOG0376|consen 92 LLDLEKV 98 (476)
T ss_pred HHHHHHh
Confidence 5555544
No 493
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.75 E-value=5e+02 Score=21.62 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHH
Q 003746 261 SWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340 (798)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 340 (798)
....++..|...|++++|.+.+.++......++..........=.+....+....++..+.+.+.........++-+.+.
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Q ss_pred hCCCHH
Q 003746 341 SCGEIT 346 (798)
Q Consensus 341 ~~g~~~ 346 (798)
...+++
T Consensus 84 ~l~dl~ 89 (113)
T smart00544 84 DIEDLE 89 (113)
T ss_pred hChhhh
No 494
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=8.9e+02 Score=24.53 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=36.4
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCCc-----chHHHHHHHHHhcCCHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPNS-----KHYGCMVDLLGRAGMLKEAE----ELIESMPMSPDVATWGALLG 603 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~l~~ 603 (798)
.|.-.+++-.|--+-+++.+++=-.|+. ..|+.++..-.....+-++- ++++......|..+|.-.++
T Consensus 180 L~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS 256 (439)
T COG5071 180 LFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLS 256 (439)
T ss_pred HHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhh
Confidence 4555667777766666666654444542 34555555444444444454 44444444455555655554
No 495
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=20.44 E-value=6.2e+02 Score=22.61 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003746 491 GVSSWNALIIGFAMNGL-ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHM 540 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 540 (798)
+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777755544 334677788888777788888888888877654
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.43 E-value=8.2e+02 Score=23.97 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhc-cCchHHHHHHHHHH
Q 003746 264 ALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACAN-LTVVKAGTSVHALA 320 (798)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~~~~ 320 (798)
.++..+-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+..+...+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3556667778888888888888877666655544444444432 23333344444333
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.00 E-value=6e+02 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 419 (798)
+.+++......+..+ +.+..-...+......|++..|++++.+.++
T Consensus 110 kr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 110 KRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444444444444 2233344567777788999999988887765
Done!