Query 003746
Match_columns 798
No_of_seqs 876 out of 5189
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 02:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.1E-42 2.8E-46 391.4 38.8 500 73-658 62-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.9E-39 9.8E-44 370.2 36.6 458 176-660 63-547 (597)
3 4g26_A Pentatricopeptide repea 99.9 1.9E-26 6.6E-31 252.7 23.1 197 379-576 9-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.8E-28 226.7 43.9 369 267-644 7-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.7E-23 2E-27 221.1 41.8 348 302-658 7-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 4.5E-25 1.5E-29 241.8 21.7 184 260-474 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.9E-21 1.3E-25 215.0 35.4 421 230-659 8-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-21 8.2E-26 216.8 31.6 432 200-636 9-490 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-20 4.4E-25 207.0 35.9 321 326-654 23-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 5.6E-20 1.9E-24 206.9 36.1 440 96-633 25-500 (537)
11 3fp2_A TPR repeat-containing p 99.9 4.6E-20 1.6E-24 207.6 32.9 247 405-659 216-492 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.6E-19 5.3E-24 198.4 35.5 344 258-629 25-415 (450)
13 1xi4_A Clathrin heavy chain; a 99.8 3.9E-15 1.3E-19 172.0 55.0 354 263-650 989-1376(1630)
14 1b89_A Protein (clathrin heavy 99.8 1E-18 3.5E-23 181.9 19.8 196 62-283 6-201 (449)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-16 4E-21 169.2 35.8 302 328-658 2-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 7.5E-17 2.6E-21 170.7 33.5 317 295-641 4-352 (359)
17 1xi4_A Clathrin heavy chain; a 99.8 2.9E-14 1E-18 164.8 56.5 379 94-512 985-1375(1630)
18 3hym_B Cell division cycle pro 99.8 4.8E-16 1.6E-20 162.4 30.1 274 369-645 31-321 (330)
19 1b89_A Protein (clathrin heavy 99.7 9.4E-17 3.2E-21 167.3 22.5 321 239-626 14-343 (449)
20 1fch_A Peroxisomal targeting s 99.7 1.7E-16 5.7E-21 169.0 23.9 254 394-654 67-355 (368)
21 2xm6_A Protein corresponding t 99.7 1.3E-14 4.4E-19 160.9 39.3 365 226-641 37-452 (490)
22 3hym_B Cell division cycle pro 99.7 7.7E-16 2.7E-20 160.8 27.3 263 390-658 21-299 (330)
23 2ooe_A Cleavage stimulation fa 99.7 6.4E-15 2.2E-19 165.0 36.5 209 444-658 256-492 (530)
24 3mkr_A Coatomer subunit epsilo 99.7 6.8E-15 2.3E-19 150.2 30.6 267 372-652 11-288 (291)
25 4eqf_A PEX5-related protein; a 99.7 7.5E-16 2.6E-20 163.8 22.1 257 393-654 67-352 (365)
26 2ooe_A Cleavage stimulation fa 99.7 6E-14 2.1E-18 157.1 37.9 394 226-628 11-496 (530)
27 2xm6_A Protein corresponding t 99.7 1.9E-13 6.6E-18 151.3 40.7 336 307-660 56-434 (490)
28 3mkr_A Coatomer subunit epsilo 99.7 2.5E-15 8.6E-20 153.5 23.0 247 399-660 7-266 (291)
29 1fch_A Peroxisomal targeting s 99.7 1.5E-15 5.1E-20 161.6 21.0 275 374-658 15-314 (368)
30 4eqf_A PEX5-related protein; a 99.7 9.1E-16 3.1E-20 163.1 18.7 231 425-658 64-310 (365)
31 4g1t_A Interferon-induced prot 99.7 1.2E-13 4.1E-18 152.4 33.9 368 258-669 50-470 (472)
32 3cv0_A Peroxisome targeting si 99.7 8.5E-15 2.9E-19 152.7 23.3 272 360-655 21-312 (327)
33 4g1t_A Interferon-induced prot 99.7 3.7E-14 1.3E-18 156.4 29.5 348 258-636 93-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.6 7.2E-16 2.5E-20 172.8 10.1 147 360-506 127-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.6 5.2E-16 1.8E-20 173.9 8.2 151 391-577 127-286 (1134)
36 3cv0_A Peroxisome targeting si 99.6 4.1E-14 1.4E-18 147.4 20.8 271 328-626 20-317 (327)
37 2pl2_A Hypothetical conserved 99.6 5.2E-14 1.8E-18 137.1 18.5 194 458-656 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5E-18 137.7 22.1 228 392-658 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.6E-18 136.4 21.2 234 360-637 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.6E-13 2.6E-17 134.0 21.6 240 404-652 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.5E-17 131.4 20.3 238 399-642 11-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 4.3E-12 1.5E-16 138.4 24.4 376 204-655 10-418 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 4.8E-12 1.7E-16 126.3 21.3 197 461-659 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.4 8.5E-12 2.9E-16 121.8 22.3 197 460-658 7-211 (225)
45 2h6f_A Protein farnesyltransfe 99.4 5E-12 1.7E-16 133.5 20.8 242 391-640 97-364 (382)
46 1ouv_A Conserved hypothetical 99.4 3.2E-11 1.1E-15 122.0 26.0 223 390-659 5-252 (273)
47 1ouv_A Conserved hypothetical 99.4 4.1E-11 1.4E-15 121.2 26.2 192 460-660 5-217 (273)
48 2ho1_A Type 4 fimbrial biogene 99.4 3.1E-11 1.1E-15 120.3 24.7 205 391-634 37-248 (252)
49 2q7f_A YRRB protein; TPR, prot 99.4 3.9E-12 1.3E-16 126.0 17.9 197 460-659 22-223 (243)
50 4a1s_A PINS, partner of inscut 99.4 2.6E-12 9.1E-17 138.6 17.2 261 396-658 53-372 (411)
51 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.8E-16 135.8 19.4 263 394-657 12-335 (406)
52 3e4b_A ALGK; tetratricopeptide 99.4 7.5E-12 2.6E-16 136.4 20.2 343 300-660 9-389 (452)
53 2q7f_A YRRB protein; TPR, prot 99.4 5.4E-12 1.9E-16 125.0 17.4 212 390-640 22-238 (243)
54 3ro2_A PINS homolog, G-protein 99.4 7.3E-12 2.5E-16 130.5 19.1 259 398-658 12-332 (338)
55 4e6h_A MRNA 3'-END-processing 99.4 7.9E-10 2.7E-14 124.5 36.6 449 110-630 46-576 (679)
56 3vtx_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 115.7 19.6 164 491-659 4-171 (184)
57 2vq2_A PILW, putative fimbrial 99.4 5E-11 1.7E-15 116.2 23.0 207 390-635 7-222 (225)
58 2h6f_A Protein farnesyltransfe 99.4 7.6E-12 2.6E-16 132.1 18.1 225 427-658 98-348 (382)
59 2pl2_A Hypothetical conserved 99.4 2.6E-11 8.9E-16 117.9 19.8 191 358-589 3-211 (217)
60 3sf4_A G-protein-signaling mod 99.4 9.5E-12 3.2E-16 133.8 18.1 288 328-646 8-364 (406)
61 3u4t_A TPR repeat-containing p 99.4 3.4E-11 1.2E-15 121.6 20.7 227 428-659 5-251 (272)
62 4abn_A Tetratricopeptide repea 99.4 4.2E-12 1.4E-16 139.3 14.8 207 443-655 85-318 (474)
63 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.4E-11 8.1E-16 122.9 17.9 217 437-659 16-245 (275)
64 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-11 6.1E-16 139.7 17.9 161 492-657 9-173 (723)
65 4a1s_A PINS, partner of inscut 99.3 5.3E-11 1.8E-15 128.3 17.7 267 330-627 49-375 (411)
66 3ro2_A PINS homolog, G-protein 99.3 7.3E-11 2.5E-15 122.9 18.2 265 332-627 8-335 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 9.3E-11 3.2E-15 110.6 17.1 165 460-629 4-175 (184)
68 2ond_A Cleavage stimulation fa 99.3 1.2E-09 4.3E-14 112.4 27.0 218 408-630 33-276 (308)
69 3nf1_A KLC 1, kinesin light ch 99.3 1.8E-11 6.3E-16 126.1 12.5 241 392-657 28-306 (311)
70 4e6h_A MRNA 3'-END-processing 99.3 1.5E-08 5.2E-13 114.1 37.0 131 94-225 64-222 (679)
71 3ulq_A Response regulator aspa 99.2 4.2E-10 1.4E-14 120.1 20.4 127 529-656 226-366 (383)
72 3ulq_A Response regulator aspa 99.2 1.6E-10 5.3E-15 123.4 16.9 288 339-626 22-370 (383)
73 3as5_A MAMA; tetratricopeptide 99.2 3.6E-10 1.2E-14 106.2 17.6 161 495-658 11-173 (186)
74 4i17_A Hypothetical protein; T 99.2 3.8E-10 1.3E-14 110.6 17.4 162 494-658 9-209 (228)
75 4i17_A Hypothetical protein; T 99.2 6.2E-10 2.1E-14 109.0 18.6 203 425-639 6-224 (228)
76 1hz4_A MALT regulatory protein 99.2 7.2E-09 2.5E-13 109.9 28.1 260 398-657 21-321 (373)
77 2ond_A Cleavage stimulation fa 99.2 1.2E-09 4.3E-14 112.4 20.9 212 443-660 33-272 (308)
78 3q15_A PSP28, response regulat 99.2 7.1E-09 2.4E-13 110.2 26.3 228 397-656 107-363 (378)
79 4abn_A Tetratricopeptide repea 99.1 7.2E-10 2.5E-14 121.5 17.9 179 476-659 83-288 (474)
80 3as5_A MAMA; tetratricopeptide 99.1 2E-09 6.8E-14 101.0 18.2 168 461-631 8-180 (186)
81 3nf1_A KLC 1, kinesin light ch 99.1 1.6E-10 5.6E-15 118.9 11.2 243 363-627 30-310 (311)
82 3qky_A Outer membrane assembly 99.1 3.8E-09 1.3E-13 105.8 18.2 204 460-704 14-247 (261)
83 3q15_A PSP28, response regulat 99.1 5E-09 1.7E-13 111.4 19.8 188 467-654 107-328 (378)
84 1qqe_A Vesicular transport pro 99.1 1.8E-09 6.1E-14 110.2 15.5 186 470-655 46-266 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.0 1.2E-09 4.1E-14 124.6 14.9 162 460-626 8-176 (723)
86 3edt_B KLC 2, kinesin light ch 99.0 2E-09 7E-14 108.8 14.8 221 437-657 12-280 (283)
87 4ga2_A E3 SUMO-protein ligase 99.0 5.5E-10 1.9E-14 101.1 7.8 139 501-644 6-149 (150)
88 1hz4_A MALT regulatory protein 99.0 5.3E-07 1.8E-11 95.4 31.8 162 393-554 137-320 (373)
89 1qqe_A Vesicular transport pro 99.0 7.2E-09 2.5E-13 105.7 16.5 223 375-634 32-279 (292)
90 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.5E-12 94.4 23.3 175 480-659 85-283 (310)
91 3edt_B KLC 2, kinesin light ch 98.9 4.7E-08 1.6E-12 98.6 19.5 201 391-625 43-282 (283)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 7E-08 2.4E-12 94.0 19.5 180 462-661 5-216 (225)
93 3qky_A Outer membrane assembly 98.9 2.4E-08 8.2E-13 99.9 16.1 200 425-645 14-248 (261)
94 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 87.0 14.9 93 565-657 37-131 (136)
95 2pzi_A Probable serine/threoni 98.9 3.1E-08 1.1E-12 113.6 18.2 167 472-644 402-583 (681)
96 2fo7_A Synthetic consensus TPR 98.9 6.9E-08 2.4E-12 84.7 16.1 132 494-628 3-136 (136)
97 3qou_A Protein YBBN; thioredox 98.8 3.6E-08 1.2E-12 100.1 15.0 175 477-656 102-282 (287)
98 3gyz_A Chaperone protein IPGC; 98.8 1.9E-08 6.5E-13 90.5 10.1 102 558-659 30-134 (151)
99 4ga2_A E3 SUMO-protein ligase 98.8 7.1E-09 2.4E-13 93.7 7.1 121 535-658 5-129 (150)
100 3rjv_A Putative SEL1 repeat pr 98.8 3E-07 1E-11 88.5 18.2 172 480-660 5-199 (212)
101 2r5s_A Uncharacterized protein 98.8 3.5E-08 1.2E-12 91.9 11.2 155 498-657 12-172 (176)
102 2uy1_A Cleavage stimulation fa 98.8 3.8E-06 1.3E-10 91.8 29.1 350 242-622 28-411 (493)
103 2vgx_A Chaperone SYCD; alterna 98.8 2.6E-08 8.9E-13 89.7 9.6 101 559-659 16-119 (148)
104 3mv2_B Coatomer subunit epsilo 98.7 5.4E-07 1.8E-11 90.0 19.5 180 445-632 85-290 (310)
105 3urz_A Uncharacterized protein 98.7 1.1E-07 3.9E-12 91.2 14.2 126 497-628 59-190 (208)
106 3urz_A Uncharacterized protein 98.7 1E-07 3.4E-12 91.6 13.3 156 498-659 10-187 (208)
107 2vsy_A XCC0866; transferase, g 98.7 1E-07 3.5E-12 107.3 15.5 158 474-636 2-169 (568)
108 4gco_A Protein STI-1; structur 98.7 6.8E-08 2.3E-12 84.1 10.7 106 529-637 15-123 (126)
109 2pzi_A Probable serine/threoni 98.7 4.8E-08 1.6E-12 112.0 12.1 151 503-659 402-564 (681)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 3.8E-07 1.3E-11 93.6 17.7 220 403-651 3-254 (307)
111 2qfc_A PLCR protein; TPR, HTH, 98.7 4.8E-07 1.6E-11 92.1 17.9 164 494-657 77-265 (293)
112 4gco_A Protein STI-1; structur 98.7 8.4E-08 2.9E-12 83.6 10.1 100 559-658 8-110 (126)
113 2xcb_A PCRH, regulatory protei 98.6 2.3E-07 7.7E-12 82.8 12.4 100 559-658 13-115 (142)
114 3u3w_A Transcriptional activat 98.6 2.2E-06 7.5E-11 87.2 21.2 161 497-657 80-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.6E-07 1.9E-11 86.5 15.7 125 530-659 9-151 (213)
116 2vsy_A XCC0866; transferase, g 98.6 3.5E-07 1.2E-11 102.9 16.2 144 440-589 3-154 (568)
117 2yhc_A BAMD, UPF0169 lipoprote 98.6 7E-07 2.4E-11 86.8 15.8 184 426-630 4-219 (225)
118 3qou_A Protein YBBN; thioredox 98.6 4.9E-07 1.7E-11 91.6 14.0 132 525-659 114-249 (287)
119 2r5s_A Uncharacterized protein 98.6 7.3E-07 2.5E-11 82.8 13.7 154 465-623 10-172 (176)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.4E-11 83.9 15.7 144 465-628 10-154 (213)
121 2e2e_A Formate-dependent nitri 98.5 7.4E-07 2.5E-11 82.8 13.1 119 539-660 22-146 (177)
122 3dra_A Protein farnesyltransfe 98.5 9.9E-06 3.4E-10 81.8 22.1 178 476-657 84-286 (306)
123 2c2l_A CHIP, carboxy terminus 98.5 2.9E-07 9.9E-12 93.0 10.5 191 460-658 3-199 (281)
124 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.7E-11 75.0 13.6 114 528-643 10-125 (125)
125 2ifu_A Gamma-SNAP; membrane fu 98.5 3.3E-07 1.1E-11 94.0 11.1 197 438-656 3-222 (307)
126 1a17_A Serine/threonine protei 98.5 1.4E-06 4.9E-11 79.6 14.2 126 529-657 15-145 (166)
127 3gyz_A Chaperone protein IPGC; 98.5 3.1E-07 1.1E-11 82.5 8.9 104 523-629 31-138 (151)
128 1p5q_A FKBP52, FK506-binding p 98.5 8.6E-07 2.9E-11 92.0 13.0 94 563-656 196-292 (336)
129 2vyi_A SGTA protein; chaperone 98.5 1.6E-06 5.4E-11 75.4 12.9 115 528-645 13-130 (131)
130 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.4E-11 76.4 11.7 113 529-644 18-133 (133)
131 3dra_A Protein farnesyltransfe 98.4 6.8E-05 2.3E-09 75.6 25.7 225 405-636 47-300 (306)
132 3u3w_A Transcriptional activat 98.4 1.8E-05 6.1E-10 80.3 21.6 158 467-624 81-266 (293)
133 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.1E-11 73.2 11.1 99 562-660 5-108 (112)
134 1wao_1 Serine/threonine protei 98.4 1.7E-06 5.8E-11 94.4 13.5 116 536-654 15-135 (477)
135 3upv_A Heat shock protein STI1 98.4 1.8E-06 6E-11 75.0 11.0 95 564-658 5-101 (126)
136 1hxi_A PEX5, peroxisome target 98.4 9.2E-07 3.2E-11 76.2 8.9 96 564-659 18-115 (121)
137 2qfc_A PLCR protein; TPR, HTH, 98.4 7.3E-06 2.5E-10 83.3 17.1 162 463-624 77-266 (293)
138 3gw4_A Uncharacterized protein 98.4 4.9E-06 1.7E-10 79.0 14.9 129 529-657 28-175 (203)
139 3rjv_A Putative SEL1 repeat pr 98.4 1.6E-05 5.4E-10 76.2 18.5 157 390-555 17-196 (212)
140 2uy1_A Cleavage stimulation fa 98.4 4.5E-05 1.5E-09 83.3 24.1 336 271-655 6-380 (493)
141 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-06 4.6E-11 78.3 9.6 110 523-635 16-129 (148)
142 3sz7_A HSC70 cochaperone (SGT) 98.3 4.8E-06 1.7E-10 76.1 13.0 96 563-658 11-108 (164)
143 4gcn_A Protein STI-1; structur 98.3 1.5E-06 5.2E-11 75.6 9.0 94 564-657 9-111 (127)
144 3q49_B STIP1 homology and U bo 98.3 3.7E-06 1.3E-10 74.1 11.4 98 562-659 8-107 (137)
145 2e2e_A Formate-dependent nitri 98.3 4.9E-06 1.7E-10 77.2 12.4 129 503-635 21-155 (177)
146 3gw4_A Uncharacterized protein 98.3 3.8E-06 1.3E-10 79.7 11.8 152 473-624 4-176 (203)
147 1elw_A TPR1-domain of HOP; HOP 98.3 1.1E-05 3.9E-10 68.3 13.2 107 529-638 6-115 (118)
148 4f3v_A ESX-1 secretion system 98.3 1.6E-06 5.4E-11 85.5 8.4 135 496-635 106-247 (282)
149 1elw_A TPR1-domain of HOP; HOP 98.3 5.1E-06 1.8E-10 70.5 10.8 97 563-659 4-102 (118)
150 2xcb_A PCRH, regulatory protei 98.3 3.7E-06 1.3E-10 74.8 10.2 112 524-638 14-129 (142)
151 2xev_A YBGF; tetratricopeptide 98.3 3.6E-06 1.2E-10 73.2 9.8 91 568-658 7-105 (129)
152 2fbn_A 70 kDa peptidylprolyl i 98.3 6.3E-06 2.1E-10 78.1 12.3 168 470-658 13-186 (198)
153 1na0_A Designed protein CTPR3; 98.2 6.5E-06 2.2E-10 70.7 11.0 97 563-659 9-107 (125)
154 2dba_A Smooth muscle cell asso 98.2 1.2E-05 4.2E-10 71.6 13.0 108 529-639 30-143 (148)
155 4f3v_A ESX-1 secretion system 98.2 7.6E-06 2.6E-10 80.6 12.3 182 473-659 18-238 (282)
156 3sz7_A HSC70 cochaperone (SGT) 98.2 1E-05 3.5E-10 74.0 12.4 106 528-636 12-120 (164)
157 2dba_A Smooth muscle cell asso 98.2 8.5E-06 2.9E-10 72.6 11.7 97 562-658 27-128 (148)
158 3upv_A Heat shock protein STI1 98.2 8.8E-06 3E-10 70.5 11.4 108 529-639 6-122 (126)
159 2lni_A Stress-induced-phosphop 98.2 5.6E-06 1.9E-10 72.2 10.1 97 562-658 15-113 (133)
160 2hr2_A Hypothetical protein; a 98.2 4.3E-06 1.5E-10 74.3 8.6 64 595-658 57-131 (159)
161 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4.1E-10 73.3 11.3 65 594-658 62-126 (162)
162 2vyi_A SGTA protein; chaperone 98.2 8.2E-06 2.8E-10 70.7 9.8 98 562-659 11-110 (131)
163 1a17_A Serine/threonine protei 98.1 3.6E-05 1.2E-09 70.0 13.9 127 493-623 14-145 (166)
164 1elr_A TPR2A-domain of HOP; HO 98.1 1.9E-05 6.6E-10 68.3 11.4 92 566-657 7-107 (131)
165 1p5q_A FKBP52, FK506-binding p 98.1 1.8E-05 6.2E-10 82.0 12.7 127 492-623 147-293 (336)
166 1wao_1 Serine/threonine protei 98.1 2.9E-05 1E-09 84.6 14.8 116 467-587 12-134 (477)
167 3q49_B STIP1 homology and U bo 98.1 2.2E-05 7.6E-10 68.9 11.4 99 526-627 8-109 (137)
168 3k9i_A BH0479 protein; putativ 98.1 2.5E-06 8.7E-11 72.9 4.9 82 576-657 3-89 (117)
169 1hxi_A PEX5, peroxisome target 98.1 1.1E-05 3.9E-10 69.3 8.8 97 530-629 20-119 (121)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.1E-05 7.3E-10 85.3 13.0 143 492-656 268-413 (457)
171 2xev_A YBGF; tetratricopeptide 98.0 4.9E-05 1.7E-09 65.8 12.3 101 533-636 8-117 (129)
172 3ro3_A PINS homolog, G-protein 98.0 2.7E-05 9.3E-10 70.3 11.1 93 565-657 51-157 (164)
173 3q7a_A Farnesyltransferase alp 98.0 0.00036 1.2E-08 71.1 20.2 177 477-657 105-330 (349)
174 3q7a_A Farnesyltransferase alp 98.0 0.0019 6.5E-08 65.8 25.5 231 399-636 62-344 (349)
175 4b4t_Q 26S proteasome regulato 98.0 3.3E-05 1.1E-09 83.3 13.6 164 494-657 57-244 (434)
176 3dss_A Geranylgeranyl transfer 98.0 0.00079 2.7E-08 68.2 22.6 117 402-521 40-174 (331)
177 2hr2_A Hypothetical protein; a 98.0 1.3E-05 4.4E-10 71.2 8.0 71 565-635 59-142 (159)
178 2kck_A TPR repeat; tetratricop 98.0 3.9E-05 1.3E-09 64.2 10.7 98 529-629 8-111 (112)
179 4gcn_A Protein STI-1; structur 98.0 3.6E-05 1.2E-09 66.7 10.6 104 494-627 10-115 (127)
180 1ihg_A Cyclophilin 40; ppiase 98.0 2.9E-05 1E-09 81.4 11.9 137 493-651 224-363 (370)
181 1elr_A TPR2A-domain of HOP; HO 98.0 5.7E-05 1.9E-09 65.3 11.9 107 530-639 7-122 (131)
182 2c2l_A CHIP, carboxy terminus 98.0 3.1E-05 1.1E-09 77.9 11.5 103 526-631 3-108 (281)
183 3rkv_A Putative peptidylprolyl 98.0 2E-05 6.7E-10 71.8 8.8 76 563-638 63-141 (162)
184 2fbn_A 70 kDa peptidylprolyl i 98.0 8E-05 2.7E-09 70.4 13.1 63 596-658 89-151 (198)
185 3k9i_A BH0479 protein; putativ 97.9 1.2E-05 4.2E-10 68.5 5.9 94 540-633 3-99 (117)
186 3ro3_A PINS homolog, G-protein 97.9 3.5E-05 1.2E-09 69.5 9.4 132 495-626 12-160 (164)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.1E-10 81.6 8.7 147 494-660 181-330 (338)
188 1dce_A Protein (RAB geranylger 97.9 0.00023 7.8E-09 79.0 17.5 167 476-647 44-244 (567)
189 3n71_A Histone lysine methyltr 97.9 6E-05 2E-09 81.5 12.5 123 537-659 319-465 (490)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 1.5E-05 5.2E-10 82.6 7.2 114 529-659 181-294 (338)
191 3dss_A Geranylgeranyl transfer 97.9 0.0018 6.1E-08 65.7 21.9 217 438-659 41-305 (331)
192 3ma5_A Tetratricopeptide repea 97.8 7.1E-05 2.4E-09 61.6 8.9 66 593-658 5-70 (100)
193 4b4t_Q 26S proteasome regulato 97.8 0.0002 6.9E-09 77.0 14.8 157 501-657 13-203 (434)
194 2l6j_A TPR repeat-containing p 97.8 3.3E-05 1.1E-09 64.8 6.5 91 563-653 4-102 (111)
195 1ihg_A Cyclophilin 40; ppiase 97.7 0.00012 4.1E-09 76.7 11.2 112 528-658 224-336 (370)
196 1zu2_A Mitochondrial import re 97.7 1.9E-05 6.6E-10 69.9 4.1 85 576-660 15-122 (158)
197 1na3_A Designed protein CTPR2; 97.7 0.00012 4E-09 58.7 8.6 81 563-643 9-91 (91)
198 2kat_A Uncharacterized protein 97.7 0.00011 3.7E-09 62.2 8.5 78 581-658 3-82 (115)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00028 9.5E-09 76.4 13.7 112 529-659 270-381 (457)
200 3bee_A Putative YFRE protein; 97.7 0.00046 1.6E-08 55.5 11.0 69 592-660 3-74 (93)
201 3n71_A Histone lysine methyltr 97.6 0.00018 6E-09 77.9 10.4 115 572-704 318-450 (490)
202 1zu2_A Mitochondrial import re 97.6 5.9E-05 2E-09 66.7 5.2 107 542-658 17-147 (158)
203 3qwp_A SET and MYND domain-con 97.5 0.00026 8.8E-09 75.4 10.4 115 571-703 295-427 (429)
204 2l6j_A TPR repeat-containing p 97.4 0.00037 1.3E-08 58.1 8.0 67 593-659 2-68 (111)
205 3qww_A SET and MYND domain-con 97.4 0.00025 8.5E-09 75.4 7.6 82 576-657 311-410 (433)
206 1klx_A Cysteine rich protein B 97.3 0.0016 5.5E-08 57.0 11.3 111 542-660 10-128 (138)
207 3lvg_A Clathrin heavy chain 1; 97.3 7E-06 2.4E-10 84.4 -5.3 277 77-381 37-325 (624)
208 1dce_A Protein (RAB geranylger 97.2 0.0033 1.1E-07 69.6 15.2 149 505-658 42-221 (567)
209 3ly7_A Transcriptional activat 97.2 0.0036 1.2E-07 63.6 14.0 46 490-537 192-243 (372)
210 1na3_A Designed protein CTPR2; 97.2 0.00092 3.2E-08 53.2 7.7 65 594-658 8-72 (91)
211 2kat_A Uncharacterized protein 97.1 0.0016 5.6E-08 54.7 8.2 80 546-628 4-86 (115)
212 3qww_A SET and MYND domain-con 97.1 0.0023 7.9E-08 67.9 11.0 94 541-634 312-426 (433)
213 1klx_A Cysteine rich protein B 97.0 0.0058 2E-07 53.4 11.5 112 506-626 9-128 (138)
214 1pc2_A Mitochondria fission pr 96.9 0.0044 1.5E-07 54.1 9.6 91 592-708 29-124 (152)
215 3qwp_A SET and MYND domain-con 96.9 0.0051 1.7E-07 65.4 12.2 99 537-635 297-416 (429)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.018 6E-07 67.4 17.9 152 175-353 608-760 (814)
217 3ly7_A Transcriptional activat 96.9 0.0074 2.5E-07 61.3 12.2 133 524-660 191-341 (372)
218 2kc7_A BFR218_protein; tetratr 96.9 0.0041 1.4E-07 50.4 8.7 78 569-654 6-86 (99)
219 2kc7_A BFR218_protein; tetratr 96.8 0.0027 9.1E-08 51.6 6.7 59 601-659 6-65 (99)
220 3ma5_A Tetratricopeptide repea 96.4 0.01 3.5E-07 48.3 8.1 62 492-555 7-69 (100)
221 3mkq_A Coatomer beta'-subunit; 96.3 0.14 4.9E-06 59.6 20.3 111 372-517 664-774 (814)
222 3u64_A Protein TP_0956; tetrat 96.2 0.013 4.4E-07 57.0 8.6 87 579-665 179-276 (301)
223 1wy6_A Hypothetical protein ST 96.2 0.32 1.1E-05 40.7 15.2 139 504-661 19-157 (172)
224 2v5f_A Prolyl 4-hydroxylase su 96.0 0.028 9.7E-07 46.0 8.6 68 568-635 10-86 (104)
225 3bee_A Putative YFRE protein; 95.8 0.037 1.3E-06 44.2 8.0 70 561-630 4-78 (93)
226 1pc2_A Mitochondria fission pr 95.5 0.034 1.2E-06 48.5 7.5 74 562-635 31-111 (152)
227 3mkq_B Coatomer subunit alpha; 95.3 0.8 2.7E-05 40.9 15.8 129 469-621 13-141 (177)
228 1nzn_A CGI-135 protein, fissio 95.3 0.086 2.9E-06 44.2 8.7 65 593-657 33-102 (126)
229 1qsa_A Protein (soluble lytic 94.9 5.8 0.0002 43.8 27.3 122 506-635 228-355 (618)
230 1y8m_A FIS1; mitochondria, unk 94.7 0.82 2.8E-05 38.9 13.2 91 592-708 36-130 (144)
231 3mkq_B Coatomer subunit alpha; 94.6 0.58 2E-05 41.8 12.7 76 237-323 14-89 (177)
232 3u64_A Protein TP_0956; tetrat 94.5 0.044 1.5E-06 53.3 5.8 63 565-627 201-272 (301)
233 3lvg_A Clathrin heavy chain 1; 93.9 0.19 6.6E-06 52.3 9.2 389 60-484 52-535 (624)
234 2v5f_A Prolyl 4-hydroxylase su 93.6 0.24 8.3E-06 40.3 8.0 65 594-658 4-75 (104)
235 4gns_B Protein CSD3, chitin bi 93.0 0.69 2.4E-05 52.0 12.9 56 601-656 343-398 (754)
236 1nzn_A CGI-135 protein, fissio 92.8 1 3.5E-05 37.6 10.4 75 561-635 33-114 (126)
237 3o48_A Mitochondria fission 1 91.6 0.93 3.2E-05 38.1 8.7 66 592-657 37-106 (134)
238 4h7y_A Dual specificity protei 89.1 1.6 5.5E-05 37.5 8.1 55 576-630 73-129 (161)
239 3lpz_A GET4 (YOR164C homolog); 89.0 20 0.00067 35.7 23.2 164 233-418 40-214 (336)
240 4h7y_A Dual specificity protei 88.1 1.6 5.3E-05 37.6 7.4 54 608-661 73-126 (161)
241 4ady_A RPN2, 26S proteasome re 86.9 50 0.0017 38.1 34.9 215 369-589 383-620 (963)
242 2wpv_A GET4, UPF0363 protein Y 86.3 27 0.00093 34.4 23.0 142 207-370 23-175 (312)
243 3ltj_A Alpharep-4; protein eng 84.7 23 0.00078 32.1 15.9 61 226-287 119-179 (201)
244 3o48_A Mitochondria fission 1 84.2 6.9 0.00024 32.8 9.3 40 595-634 78-117 (134)
245 4gns_B Protein CSD3, chitin bi 84.2 5.9 0.0002 44.6 11.8 56 332-387 340-398 (754)
246 1y8m_A FIS1; mitochondria, unk 83.9 11 0.00038 32.0 10.6 40 596-635 78-117 (144)
247 2p58_C Putative type III secre 83.8 7.5 0.00026 30.5 8.5 51 237-289 49-99 (116)
248 2uwj_G Type III export protein 83.5 7.2 0.00025 30.5 8.3 51 237-289 48-98 (115)
249 1wy6_A Hypothetical protein ST 83.3 19 0.00066 30.3 14.4 85 372-458 73-157 (172)
250 2wpv_A GET4, UPF0363 protein Y 82.9 38 0.0013 33.4 23.0 180 340-556 24-217 (312)
251 3ltm_A Alpha-REP4; protein eng 82.4 29 0.001 31.7 16.8 83 223-309 90-172 (211)
252 4b4t_P 26S proteasome regulato 81.8 37 0.0013 35.7 16.5 203 405-621 30-264 (445)
253 2ff4_A Probable regulatory pro 81.2 3.7 0.00012 42.6 8.3 60 598-657 174-233 (388)
254 3ffl_A Anaphase-promoting comp 81.1 12 0.0004 32.9 9.9 26 630-655 123-148 (167)
255 3ffl_A Anaphase-promoting comp 80.9 7.1 0.00024 34.2 8.5 27 529-555 65-91 (167)
256 3ltm_A Alpha-REP4; protein eng 80.2 35 0.0012 31.1 17.9 11 409-419 174-184 (211)
257 1v54_E Cytochrome C oxidase po 79.3 11 0.00038 29.7 8.1 62 508-571 26-87 (109)
258 1wdy_A 2-5A-dependent ribonucl 79.0 29 0.001 33.2 14.0 59 235-294 152-214 (285)
259 2qx5_A Nucleoporin NIC96; mRNA 77.3 93 0.0032 34.4 19.7 81 334-417 299-382 (661)
260 4b4t_P 26S proteasome regulato 77.0 76 0.0026 33.2 22.6 179 373-555 29-246 (445)
261 3ltj_A Alpharep-4; protein eng 76.5 44 0.0015 30.2 18.7 144 163-310 25-168 (201)
262 2uwj_G Type III export protein 76.3 18 0.00061 28.4 8.4 59 469-530 47-105 (115)
263 4fhn_B Nucleoporin NUP120; pro 76.3 32 0.0011 41.3 15.6 164 364-545 816-989 (1139)
264 3txn_A 26S proteasome regulato 75.2 65 0.0022 33.0 15.2 23 498-520 105-127 (394)
265 2ff4_A Probable regulatory pro 73.7 15 0.0005 38.0 10.3 67 497-564 176-246 (388)
266 3lpz_A GET4 (YOR164C homolog); 73.3 76 0.0026 31.5 23.7 165 364-555 39-215 (336)
267 1v54_E Cytochrome C oxidase po 71.1 16 0.00055 28.8 7.1 60 114-174 28-87 (109)
268 2y69_E Cytochrome C oxidase su 69.7 23 0.00079 29.6 8.1 60 510-571 71-130 (152)
269 1zbp_A Hypothetical protein VP 67.1 66 0.0023 30.7 12.0 52 502-555 7-59 (273)
270 2p58_C Putative type III secre 66.3 46 0.0016 26.2 10.8 49 371-421 51-99 (116)
271 4ady_A RPN2, 26S proteasome re 66.2 1.9E+02 0.0066 33.3 28.6 84 573-656 500-587 (963)
272 1wdy_A 2-5A-dependent ribonucl 65.9 92 0.0032 29.5 14.1 82 102-191 8-94 (285)
273 4fhn_B Nucleoporin NUP120; pro 65.3 80 0.0027 37.9 15.6 146 497-659 817-968 (1139)
274 2zu6_B Programmed cell death p 65.0 1.1E+02 0.0037 30.0 14.1 66 363-428 169-239 (307)
275 3eiq_C Programmed cell death p 64.4 1.2E+02 0.0042 30.4 15.7 72 362-433 219-295 (358)
276 1zbp_A Hypothetical protein VP 63.9 12 0.0004 35.8 6.2 59 572-630 6-66 (273)
277 4b4t_R RPN7, 26S proteasome re 60.6 32 0.0011 35.9 9.8 58 565-622 133-195 (429)
278 4b4t_R RPN7, 26S proteasome re 57.1 53 0.0018 34.2 10.7 96 494-589 133-234 (429)
279 3mv2_A Coatomer subunit alpha; 57.1 85 0.0029 30.8 11.0 60 586-659 196-257 (325)
280 2y69_E Cytochrome C oxidase su 56.8 38 0.0013 28.4 7.1 60 114-174 71-130 (152)
281 1k1a_A B-cell lymphoma 3-encod 53.5 1.1E+02 0.0037 28.2 11.6 24 107-130 17-40 (241)
282 3kea_A K1L; tropism, ANK repea 52.2 1.1E+02 0.0039 29.3 11.8 17 175-191 101-117 (285)
283 3esl_A Checkpoint serine/threo 52.0 1.4E+02 0.0047 27.1 13.1 86 597-708 82-169 (202)
284 3eu9_A Huntingtin-interacting 50.8 91 0.0031 28.6 10.5 22 172-193 45-66 (240)
285 2qx5_A Nucleoporin NIC96; mRNA 49.5 1.4E+02 0.0047 33.0 12.6 16 640-655 549-564 (661)
286 1n11_A Ankyrin; clathrin, BAND 47.5 2.5E+02 0.0085 28.8 15.8 19 173-191 117-135 (437)
287 1n11_A Ankyrin; clathrin, BAND 45.1 2E+02 0.0067 29.6 13.0 194 49-254 29-235 (437)
288 3kea_A K1L; tropism, ANK repea 43.1 1.2E+02 0.0043 29.0 10.4 49 141-193 38-86 (285)
289 3bqo_A Telomeric repeat-bindin 42.5 1.1E+02 0.0036 27.6 8.2 70 579-648 94-170 (211)
290 3esl_A Checkpoint serine/threo 42.4 1.1E+02 0.0038 27.7 8.6 58 310-367 95-153 (202)
291 3jxi_A Vanilloid receptor-rela 42.2 35 0.0012 32.3 6.0 117 268-384 11-161 (260)
292 4a1g_A Mitotic checkpoint seri 42.2 1.5E+02 0.0051 25.5 9.1 50 612-661 82-133 (152)
293 4b4t_S RPN3, 26S proteasome re 40.8 89 0.0031 33.1 9.0 63 564-626 232-301 (523)
294 2wvi_A Mitotic checkpoint seri 39.5 1.7E+02 0.0059 25.5 9.2 49 613-661 78-128 (164)
295 2nsz_A Programmed cell death p 39.5 1.6E+02 0.0056 24.3 10.0 64 363-426 10-78 (129)
296 2nsz_A Programmed cell death p 38.8 45 0.0015 27.9 5.2 21 203-223 13-33 (129)
297 3aji_A 26S proteasome non-ATPa 38.0 2.2E+02 0.0075 25.8 10.9 14 77-90 15-28 (231)
298 2ion_A PDCD4, programmed cell 37.6 1.5E+02 0.0053 25.4 8.6 63 363-425 12-79 (152)
299 2l0z_A Glycoprotein G2; zinc-b 37.0 11 0.00038 23.6 0.9 10 788-797 20-29 (42)
300 1k1a_A B-cell lymphoma 3-encod 35.5 2.6E+02 0.0087 25.4 13.4 13 77-89 18-30 (241)
301 3ygs_P Procaspase 9; apoptosis 35.2 61 0.0021 25.4 5.2 65 48-117 25-89 (97)
302 4a1g_A Mitotic checkpoint seri 35.0 1.6E+02 0.0054 25.3 8.1 56 313-368 84-140 (152)
303 3txn_A 26S proteasome regulato 34.6 3.8E+02 0.013 27.2 26.5 281 332-660 22-345 (394)
304 3ljn_A Hypothetical protein; a 34.2 1.5E+02 0.0051 29.6 9.6 48 337-385 143-195 (364)
305 3jxi_A Vanilloid receptor-rela 33.8 38 0.0013 32.1 4.7 25 107-131 13-37 (260)
306 2pnn_A Transient receptor pote 33.2 80 0.0028 30.0 7.1 100 258-359 10-128 (273)
307 2d2s_A Exocyst complex compone 32.9 1E+02 0.0035 28.8 7.3 29 561-589 89-117 (235)
308 2pk8_A Uncharacterized protein 32.0 35 0.0012 26.0 3.0 29 686-714 13-41 (103)
309 2ion_A PDCD4, programmed cell 31.5 40 0.0014 29.1 3.9 21 203-223 15-35 (152)
310 3eu9_A Huntingtin-interacting 31.3 2.9E+02 0.01 24.9 11.1 16 303-318 216-231 (240)
311 1oyz_A Hypothetical protein YI 30.9 3.4E+02 0.012 25.5 20.5 19 326-344 139-157 (280)
312 3ljn_A Hypothetical protein; a 30.5 1.7E+02 0.0057 29.2 9.2 86 336-423 24-113 (364)
313 2hgo_A CASSIICOLIN; toxin, dis 29.0 11 0.00037 20.4 -0.1 13 786-798 8-22 (27)
314 2d2s_A Exocyst complex compone 28.8 2.2E+02 0.0075 26.6 8.8 23 397-419 24-46 (235)
315 4gq2_M Nucleoporin NUP120; bet 28.5 3.6E+02 0.012 31.4 12.5 33 597-629 899-932 (950)
316 1qsa_A Protein (soluble lytic 28.3 6.1E+02 0.021 27.6 41.6 401 178-621 18-439 (618)
317 3b7b_A Euchromatic histone-lys 28.3 1.9E+02 0.0065 26.4 8.6 50 172-222 14-66 (237)
318 2etb_A Transient receptor pote 27.6 56 0.0019 30.8 4.7 54 105-158 8-70 (256)
319 4b4t_S RPN3, 26S proteasome re 27.2 1.1E+02 0.0039 32.4 7.0 62 595-658 231-299 (523)
320 3d9h_A CDNA FLJ77766, highly s 26.6 4.1E+02 0.014 25.1 11.4 119 94-221 55-178 (285)
321 3mkr_B Coatomer subunit alpha; 25.0 1.5E+02 0.0052 29.0 7.0 108 502-627 112-230 (320)
322 2rfa_A Transient receptor pote 24.9 2.8E+02 0.0095 25.1 9.1 44 282-325 137-182 (232)
323 3kae_A CDC27, possible protein 24.4 3.6E+02 0.012 23.6 10.4 82 572-656 42-141 (242)
324 3re2_A Predicted protein; meni 24.0 1.8E+02 0.0062 28.8 7.1 78 562-648 295-394 (472)
325 2r9g_A AAA ATPase, central reg 23.7 3.9E+02 0.013 24.1 8.8 39 402-441 25-63 (204)
326 1ug3_A EIF4GI, eukaryotic prot 22.9 5.6E+02 0.019 25.3 12.8 23 367-389 18-40 (339)
327 1ug3_A EIF4GI, eukaryotic prot 21.8 3.4E+02 0.012 26.9 9.3 26 245-270 63-88 (339)
328 1qc6_A EVH1 domain from ENA/VA 21.7 34 0.0012 28.6 1.5 41 745-793 43-87 (130)
329 3ygs_P Procaspase 9; apoptosis 21.5 1.1E+02 0.0039 23.8 4.5 39 475-513 51-89 (97)
330 2k0q_A Putative uncharacterize 21.3 29 0.001 24.9 0.8 21 775-795 9-29 (74)
331 3aji_A 26S proteasome non-ATPa 20.6 3.2E+02 0.011 24.5 8.6 13 372-384 181-193 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-42 Score=391.36 Aligned_cols=500 Identities=9% Similarity=-0.039 Sum_probs=294.8
Q ss_pred cCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 003746 73 TDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKL 152 (798)
Q Consensus 73 ~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~ 152 (798)
.+. +.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|+++.|..
T Consensus 62 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTS-TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccc-ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 455 788899999999999999999999999999999999999999999984 45777888888888888888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHH
Q 003746 153 IHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASN 232 (798)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (798)
+++.+... ++++.+++.++.+|.++|++++|.++|+++...+... .++.+.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~---------------------- 189 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKL---------------------- 189 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------------------------------
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccc----------------------
Confidence 88877543 5778888888888888888888888888543222110 000000
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHH
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA 312 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 312 (798)
++ ++.-...++.+|+.++.+|.+.|++++|+++|++|.+. .|+..+....+..+........
T Consensus 190 ---------~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 190 ---------LM-------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp ----------C-------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHH
T ss_pred ---------cc-------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhH
Confidence 00 00111236788999999999999999999999999874 3555444333333322221111
Q ss_pred HHHH----HHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003746 313 GTSV----HALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIE 388 (798)
Q Consensus 313 a~~i----~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (798)
...+ +..+...+......+++.++.+|. +.|++++|.++|+++.+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-------------------------------HEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-------------------------------THHHHHHHHHHHHTSTT
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHc-------------------------------CcchHHHHHHHHHHhhc
Confidence 1111 222333333334444555555565 55555555555555544
Q ss_pred --CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhH
Q 003746 389 --KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 389 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..+++.
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 455555555555555556666665555555443 2244455555555555566666666555555432 334555566
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLV 543 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 543 (798)
++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 66666666666666666665432 234566666666666666666666666666542 23445666666666666666
Q ss_pred HHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHH
Q 003746 544 DEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD--VATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A 614 (798)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666666542 1224555666666666666666666666655 23454 45666666666666666666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
++.+++++++.|+++.++..++.+|...|++++|.++++++.+.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-39 Score=370.22 Aligned_cols=458 Identities=11% Similarity=0.035 Sum_probs=348.8
Q ss_pred HHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPE--RNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ++..++..++..|.+.|++++|..+|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44566667777777777777777888888888888888888888887753 5667777788888888888888888888
Q ss_pred CC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 254 MP--KKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 254 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
+. .++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++. ..+.+.+..+
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~~~~~~~~~~ 202 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------DGGIKLEASM 202 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------CSSCCHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------ccccchhHHH
Confidence 73 4677888888888888888888888887532 2220 01111111111 1245667888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHH--H-HHhcCCC----CHHHHHHHHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHN---LDLISWNSMISGYLKCGSVEKARA--L-FDAMIEK----DVVSWSTMISGY 401 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~----~~~~~~~li~~~ 401 (798)
++.++..|.+.|++++|.++|+++.. .+...|..+...+...+..+.+.. + |..+... ....|+.++..|
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 334455555554443332222211 1 3333333 344677788999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
.+.|++++|.++|++|... .++..++..++.++.+.|++++|..+++.+.+.+. .+..+++.++.+|.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999765 58999999999999999999999999999998764 37788999999999999999999
Q ss_pred HHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Q 003746 482 EVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557 (798)
Q Consensus 482 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 557 (798)
++|+.+.+ .+..+|+.++..|.+.|++++|+++|+++.+. .| +..+|..++.++.+.|++++|.++|+++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 436 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL- 436 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 99998863 46789999999999999999999999999884 44 4669999999999999999999999999763
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCC-
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVEL------QPDH- 628 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~- 628 (798)
.+.+...|..++.+|.+.|++++|.++|+++ . .+.+..+|+.++..|.+.|++++|++.++++++. +|++
T Consensus 437 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 437 -FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 2347899999999999999999999999998 2 2347899999999999999999999999999987 5554
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+..++.+|...|++++|.++++++.+.+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 56889999999999999999999999987653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.9e-26 Score=252.68 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=169.3
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc---------hhH
Q 003746 379 ARALFDAMIEK-----DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA---------LDQ 444 (798)
Q Consensus 379 A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~ 444 (798)
+..+.+.+.++ ....++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555433 2345888999999999999999999999999999999999999999987554 678
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE----KGVSSWNALIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
|.++|+.|.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875 5788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc
Q 003746 521 SGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576 (798)
Q Consensus 521 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 576 (798)
.|+.||..||+.|+.+|++.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999965 58999999999999988763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-23 Score=226.68 Aligned_cols=369 Identities=11% Similarity=0.084 Sum_probs=266.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCchh-HHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH
Q 003746 267 SCYEQNEMYEEALVLFMNMIDHRVMVDEVV-VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI 345 (798)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 345 (798)
..+.+.|++++|++.++++.+. .|+... +..+...+...++.+.+...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3344555555555555555442 233322 2222233344455555555555554432 44556667777777777777
Q ss_pred HHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003746 346 TTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQH 419 (798)
Q Consensus 346 ~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 419 (798)
++|.+.|++. .+.+...|..+..++.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777652 233345677777777777777777777776642 2455677777777777888888888887776
Q ss_pred cCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHH
Q 003746 420 HGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWN 496 (798)
Q Consensus 420 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 496 (798)
.. +-+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++... .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 52 2245667777777778888888888888877764 23566777788888888888888888886553 3467888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR 575 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 575 (798)
.+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++++. .+++...+..++..|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8899999999999999999999884 454 457888888999999999999999998764 23467888899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
.|++++|.+.++++ ...| +..+|..+..++.+.|++++|...+++++++.|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999887 4445 577899999999999999999999999999999999999999988877663
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=5.7e-23 Score=221.12 Aligned_cols=348 Identities=13% Similarity=0.138 Sum_probs=304.8
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHH
Q 003746 302 SACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEK 378 (798)
Q Consensus 302 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 378 (798)
..+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++. ..+.+...|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34556799999999999888764 44566778888899999999999999976 456677899999999999999999
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003746 379 ARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDE-ATLVSVISACTHLVALDQGKWIHAYIRK 454 (798)
Q Consensus 379 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 454 (798)
|...|+++. ..+..+|..+...+.+.|++++|++.|+++... .|+. ..+..+...+...|++++|...+..+++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999884 346678999999999999999999999999885 4554 4556677778889999999999999998
Q ss_pred cCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003746 455 NGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITF 530 (798)
Q Consensus 455 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 530 (798)
.. +.+...+..+...|.+.|++++|...|+++.+. +...|..+...+...|++++|+..|++.... .|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 75 345788899999999999999999999988643 4568999999999999999999999999884 565 5688
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKK 607 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 607 (798)
..+..++...|++++|.+.|+++++ ..| +...|..++..|.+.|++++|.+.++++ . .+++..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8899999999999999999999986 355 4778999999999999999999999988 2 34578899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999863
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=4.5e-25 Score=241.85 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=150.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCccchh
Q 003746 260 VSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTV---------VKAGTSVHALAVKIGIECYIN 330 (798)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 330 (798)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987554 677888888888888888888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCC
Q 003746 331 LQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----EKDVVSWSTMISGYAQHDQ 406 (798)
Q Consensus 331 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~ 406 (798)
+||+||.+|+ +.|++++|.++|++|. .||.++||++|.+|++.|+
T Consensus 107 tyn~lI~~~~-------------------------------~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 107 TFTNGARLAV-------------------------------AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-------------------------------hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 8888888777 6666666666666663 4577778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 407 FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 407 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|..|+..+|+.+++.|+..
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888887777653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.9e-21 Score=215.04 Aligned_cols=421 Identities=10% Similarity=-0.019 Sum_probs=290.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-hhHHHHHHHHhc
Q 003746 230 ASNSMIVLFGRKGNVAEACRLFKEMPK--KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE-VVVVSVLSACAN 306 (798)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 306 (798)
.+..+...|.+.|++++|.+.|+++.+ ||...|..+..+|.+.|++++|+..|+++.+.+ |+. ..+..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 445556666677777777777766542 566666777777777777777777777666532 332 355555555666
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh----cCCCChhhHHHHH---HHHHhcCCHHHH
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA----GHNLDLISWNSMI---SGYLKCGSVEKA 379 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li---~~~~~~g~~~~A 379 (798)
.|+.+.|...+..+.+.+. ++......++..+.+......+.+.+.. ...++...+.... ............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 6666666666666655542 2222223333333322222222222210 0000000000000 000001111111
Q ss_pred HHHHHhcC----------CCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 003746 380 RALFDAMI----------EKDVVSWSTMISGYAQ---HDQFSETLSLFMEMQH-----HGIRP--------DEATLVSVI 433 (798)
Q Consensus 380 ~~~~~~m~----------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 433 (798)
...+.... ..+...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11221111 1124455555555554 8999999999999987 31122 345677777
Q ss_pred HHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHH
Q 003746 434 SACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 434 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 510 (798)
..+...|++++|...+..+.+.... ...+..+...|.+.|++++|...|+.+... +...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999999987654 888889999999999999999999987643 56789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 511 SLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 511 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|+..|++..+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999853 224568888889999999999999999999874 34 5788899999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 590 ----PMSPD----VATWGALLGACKK---HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 590 ----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..++ ..+|..+...+.. .|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4489999999999 999999999999999999999999999999999999999999999998874
Q ss_pred C
Q 003746 659 G 659 (798)
Q Consensus 659 ~ 659 (798)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-21 Score=216.77 Aligned_cols=432 Identities=11% Similarity=-0.034 Sum_probs=289.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC--CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCC
Q 003746 200 WNSILAGYVNADNVEEAKFIYNKMPE--RNIIASNSMIVLFGRKGNVAEACRLFKEMPK---KDLVSWSALISCYEQNEM 274 (798)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 274 (798)
|......+.+.|++++|+..|+++.. ++...+..+...|.+.|++++|.+.|+++.+ .+..+|..+..+|.+.|+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555554432 3444555555556666666666666655432 245677777778888888
Q ss_pred hhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHH---HHHHHhCCCHHHHHHH
Q 003746 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNAL---IHMYSSCGEITTAEKL 351 (798)
Q Consensus 275 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~~A~~~ 351 (798)
+++|+..|+++...+. ++......++..+........+...++.+.+.+..++....+.- ............+...
T Consensus 89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 8888888887776542 33333333333333222222222222111111111100000000 0000011111111111
Q ss_pred HHhc----------CCCChhhHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-CHHHHHHHHHHH
Q 003746 352 FDAG----------HNLDLISWNSMISGYLK---CGSVEKARALFDAMIE----------------K-DVVSWSTMISGY 401 (798)
Q Consensus 352 ~~~~----------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~ 401 (798)
+... .+.+...+......+.. .|++++|...|+++.. + +..+|..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 1110 01223444444444444 7889999998887654 1 356788899999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
...|++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998864 447778888889999999999999999998764 345678888999999999999999
Q ss_pred HHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 482 EVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 482 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
..|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99998653 356789999999999999999999999998852 23456888889999999999999999999976422
Q ss_pred CcCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 559 LEPN----SKHYGCMVDLLGR---AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 559 ~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
-.++ ...+..++..|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 2222 3388999999999 99999999999987 3334 678899999999999999999999999999999988
Q ss_pred chHHHHH
Q 003746 630 GFHVLLS 636 (798)
Q Consensus 630 ~~~~~l~ 636 (798)
..+..+.
T Consensus 484 ~~~~~~~ 490 (514)
T 2gw1_A 484 EKLQAIT 490 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.3e-20 Score=207.04 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=267.3
Q ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHH
Q 003746 326 ECYINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMIS 399 (798)
Q Consensus 326 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 399 (798)
+.+...+..+...|.+.|++++|.++|++ ..+.+...|..+..++.+.|++++|...|+++. ..+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44567788888899999999999999986 345567888899999999999999999998874 346788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHhcccchhHHHHHHHHHHHcCCCCcHHH
Q 003746 400 GYAQHDQFSETLSLFMEMQHHGIRPDE----ATLVSV------------ISACTHLVALDQGKWIHAYIRKNGLKINSIL 463 (798)
Q Consensus 400 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (798)
.|.+.|++++|+..|+++... .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999874 4543 344444 334788899999999999998875 447788
Q ss_pred HhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHH------
Q 003746 464 GTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEIT-FVGV------ 533 (798)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------ 533 (798)
+..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.. ..|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998764 4678999999999999999999999999987 4566553 3333
Q ss_pred ------HHHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 003746 534 ------LGACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGA 600 (798)
Q Consensus 534 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 600 (798)
...|.+.|++++|..+|+++++. .|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999874 454 457899999999999999999999987 3344 6899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH------------HHHHhcC-----ChhHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS------------NIHASKG-----RWDDVLEVRGM 654 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 654 (798)
++.+|...|++++|...+++++++.|+++..+..++ +.|...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998 4466666 44556666654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.6e-20 Score=206.92 Aligned_cols=440 Identities=10% Similarity=0.004 Sum_probs=287.7
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003746 96 GFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINM 175 (798)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (798)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4578888899999999999999999998765 4567788888899999999999999999999987 6678899999999
Q ss_pred HHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCC------chHHHHHHHHHhhcCCHHHHHH
Q 003746 176 YAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERN------IIASNSMIVLFGRKGNVAEACR 249 (798)
Q Consensus 176 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~y~~~g~~~~A~~ 249 (798)
|...|++++|...|+.+. .++...+..+..+...+...+|+..++++...+ .......+..|....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999996433 233333334555666666677888887776532 1223344555555666666666
Q ss_pred HHhcCCCCCcc---cHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHH
Q 003746 250 LFKEMPKKDLV---SWSALISCYEQN--------EMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318 (798)
Q Consensus 250 ~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 318 (798)
.+......+.. .+..+...+... |++++|+.+|+++.+. .|+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~----------------------- 236 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDD----------------------- 236 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH-----------------------
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcc-----------------------
Confidence 66555543332 222222222111 2344444444444331 11110
Q ss_pred HHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 003746 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398 (798)
Q Consensus 319 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 398 (798)
.++..+ ..+|..+.
T Consensus 237 -----------~~~~~~-------------------------------------------------------~~~~~~~g 250 (537)
T 3fp2_A 237 -----------PLRENA-------------------------------------------------------ALALCYTG 250 (537)
T ss_dssp -----------HHHHHH-------------------------------------------------------HHHHHHHH
T ss_pred -----------hhhHHH-------------------------------------------------------HHHHHHHH
Confidence 000000 11233344
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
..+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4555555666666666655553 3444555555555666666666666666665543 234566777777888888888
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+|.+.|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++++
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888877653 346688888888999999999999999888752 23345778888888999999999999998876
Q ss_pred hCCCcCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 003746 556 EHRLEPN----SKHYGCMVDLLGRA----------GMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGR 619 (798)
Q Consensus 556 ~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (798)
...-.++ ...+..+...|.+. |++++|...++++ ...| +..+|..+...+...|++++|.+.++
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4211111 12234455677777 9999999999887 3334 57888999999999999999999999
Q ss_pred HHHhcCCCCcchHH
Q 003746 620 KLVELQPDHDGFHV 633 (798)
Q Consensus 620 ~~~~~~p~~~~~~~ 633 (798)
+++++.|+++....
T Consensus 487 ~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 487 DSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHC--CHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99999998766544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.6e-20 Score=207.64 Aligned_cols=247 Identities=9% Similarity=0.022 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 405 DQFSETLSLFMEMQHHGIRPD--------EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
|++++|+.+|+++... .|+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 4678888888888764 343 2245556667788899999999999999875 447788889999999999
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSM 553 (798)
Q Consensus 477 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 553 (798)
+++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|..+++++
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998764 356789999999999999999999999999853 223568888999999999999999999999
Q ss_pred HHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHHc----------CChhHH
Q 003746 554 IQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMS----PDVATWGALLGACKKH----------GDHEMG 614 (798)
Q Consensus 554 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~----p~~~~~~~l~~~~~~~----------g~~~~A 614 (798)
.+. .| +...+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|
T Consensus 371 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 371 KLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 874 34 4778999999999999999999999986 111 1223355566777777 999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999988754
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.6e-19 Score=198.39 Aligned_cols=344 Identities=13% Similarity=0.023 Sum_probs=224.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIH 337 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 337 (798)
++..|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.+.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888889999999999999999887642 2244566666666777777777777777777664 334566777777
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 338 MYSSCGEITTAEKLFDAGHNL---DL---ISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 338 ~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
.|.+.|++++|.+.|++.... +. ..|..++..+... .+..+...+.+.|++++|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 777777777777777653222 22 4444443331110 1111233355556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK- 490 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 490 (798)
..|+++.... +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655432 2244555555555666666666666666655542 234555666666666666666666666655422
Q ss_pred --CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 491 --GVSSWNAL------------IIGFAMNGLADKSLEMFSEMKKSGVTPN-----EITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 491 --~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
+...|..+ ...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22333333 7788888888899988888887 3455 2356777788888899999999888
Q ss_pred HHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHcC-----Ch
Q 003746 552 SMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA------------CKKHG-----DH 611 (798)
Q Consensus 552 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~ 611 (798)
++++. .| +...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ |...| +.
T Consensus 320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 88763 45 4778888888888999999999888887 5555 45666666633 33334 66
Q ss_pred hHHHHHHHH-HHhcCCCCc
Q 003746 612 EMGERVGRK-LVELQPDHD 629 (798)
Q Consensus 612 ~~A~~~~~~-~~~~~p~~~ 629 (798)
+++.+.+++ +++..|++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp THHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 788888987 778888754
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.9e-15 Score=171.98 Aligned_cols=354 Identities=10% Similarity=0.087 Sum_probs=199.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHH
Q 003746 263 SALISCYEQNEMYEEALVLFMNMIDHRV--MVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYS 340 (798)
Q Consensus 263 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 340 (798)
...+.+|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +...+........+ .....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHH
Confidence 4467899999999999999999984421 11122233344333333 44444444333321 11334666677
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003746 341 SCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH 420 (798)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 420 (798)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 77777777777776531 1111222222 555666666666654 23455666666666666666666666442
Q ss_pred CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHH
Q 003746 421 GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALII 500 (798)
Q Consensus 421 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 500 (798)
-|...|..+..+|.+.|+++++.+.+...++.. +++.+.+.++.+|++.+++++..... ...+...|..+..
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 344555556666666666666666666555543 22222333555566665555433332 2233344444555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------C
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE-----------------------H 557 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-----------------------~ 557 (798)
.|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.... .
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555555555555555542 24555555555555555555554443110 0
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCC-----CC
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH--GDHEMGERVGRKLVELQP-----DH 628 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~ 628 (798)
++..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+. ++..++.+.|..-..+.| ++
T Consensus 1275 ~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1275 HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 12224455667777788888888888888665 4444 344565566555543 466666677776666665 55
Q ss_pred cchHHHHHHHHHhcCChhHHHH
Q 003746 629 DGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
...|.-+..+|.+.|+|+.|..
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHH
Confidence 6667777778888888888874
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1e-18 Score=181.92 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=64.3
Q ss_pred hhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003746 62 TFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQAS 141 (798)
Q Consensus 62 ~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~ 141 (798)
+...+.|+. +.|++++|...+++++.|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++
T Consensus 6 ~~a~~~ll~------~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~a 71 (449)
T 1b89_A 6 TSAVQVLIE------HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH------HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHH
Confidence 344566776 8999999999999997775 899999999999999999999975 36888999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHh
Q 003746 142 ALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYN 221 (798)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 221 (798)
...|++++|...+..+.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988875 46688999999999999999999988864 677799999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 003746 222 KMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFM 283 (798)
Q Consensus 222 ~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 283 (798)
.+ ..|..|++.+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|.....
T Consensus 147 ~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 147 NV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred Hh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 77 468888888888888888888888873 78888888888888888888855443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.2e-16 Score=169.16 Aligned_cols=302 Identities=13% Similarity=0.101 Sum_probs=216.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGY 401 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 401 (798)
++..+..+...|.+.|++++|...|++ ..+.+...|..+...+...|++++|...|+++. ..+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345566777777877777777777765 233455667777777777777777777777653 23556677777777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRP---DEA-TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV 477 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~p---d~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 477 (798)
...|++++|+..|+++... .| +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777653 34 211 11111100 00 11122345677888888
Q ss_pred HHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 478 DNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 478 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
++|.+.|+.+.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887653 356678888888888888999998888888752 3345577788888888889999999888887
Q ss_pred HhCCCcCC-cchHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHH
Q 003746 555 QEHRLEPN-SKHYG------------CMVDLLGRAGMLKEAEELIESM-PMSPD-V----ATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 555 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 615 (798)
+. .|+ ...+. .++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|+
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 63 343 22222 3366788999999999999887 22343 3 23556788899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 616 RVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=7.5e-17 Score=170.69 Aligned_cols=317 Identities=11% Similarity=0.016 Sum_probs=232.1
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHH
Q 003746 295 VVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYL 371 (798)
Q Consensus 295 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 371 (798)
..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++. .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 456667778889999999999999999875 456788999999999999999999999873 3446688999999999
Q ss_pred hcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHH
Q 003746 372 KCGSVEKARALFDAMIEKD------VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQG 445 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 445 (798)
+.|++++|...|++....+ ...|..+...+. ...+......+...|++++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 9999999999999885433 334444421100 00111222333444444555
Q ss_pred HHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003746 446 KWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSG 522 (798)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 522 (798)
...+..+.+.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+...|...|++++|+..|++..+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 54444444432 23445566666777777777777777776553 24557777778888888888888888887763
Q ss_pred CCCCHH-HHH------------HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-----chHHHHHHHHHhcCCHHHHHH
Q 003746 523 VTPNEI-TFV------------GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS-----KHYGCMVDLLGRAGMLKEAEE 584 (798)
Q Consensus 523 ~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~ 584 (798)
.|+.. .+. .+...+...|++++|...++++.+. .|+. ..+..+...|.+.|++++|.+
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 34433 222 2356688899999999999999774 3442 335568889999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 585 LIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 585 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
.+++. ...| +..+|..+...+...|++++|...+++++++.|+++.....+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99987 3344 788999999999999999999999999999999999888888766543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=2.9e-14 Score=164.80 Aligned_cols=379 Identities=12% Similarity=0.096 Sum_probs=239.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCC--CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNV--GVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNT 171 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (798)
|+.+ ...+.+|...|.+.+|+++|++....+- .-+...-+.++.+..+. +...+.......- .+....
T Consensus 985 PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~e 1054 (1630)
T 1xi4_A 985 PEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPD 1054 (1630)
T ss_pred HHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHH
Confidence 4444 4567888888999999999988873321 11223334444444444 4455555444432 122444
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHH
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLF 251 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f 251 (798)
+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++. .++.+|..+..++.+.|++++|...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6777778888888888888764 11112222222 667788888888766 34667778888888888888888888
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhH
Q 003746 252 KEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINL 331 (798)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 331 (798)
.+. .|...|..++..+.+.|++++|++.|...++.. ++......+..++++.++++..... ++ .++...
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHH
Confidence 664 567777778888888888888888887766644 3333333477777777776643333 21 334455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 411 (798)
+..+.+.|...|++++|...|.+. ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 556778888888888888888774 47888888888888888888888766 45567776666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh--cCCHHHHHHHHhhcCC
Q 003746 412 SLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK--LGCVDNALEVFHGTEE 489 (798)
Q Consensus 412 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~ 489 (798)
..... +..++..+..++..|.+.|.+++|..+++..+... +.....++-|..+|++ -+++.++.+.|..-..
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 55442 22334445566666666777777777666655443 3344455555555544 3445555555553332
Q ss_pred --------CCcchHHHHHHHHHHcCChHHHH
Q 003746 490 --------KGVSSWNALIIGFAMNGLADKSL 512 (798)
Q Consensus 490 --------~~~~~~~~li~~~~~~g~~~~A~ 512 (798)
.+...|..++..|.+.|+++.|+
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12345666666666666666666
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.8e-16 Score=162.45 Aligned_cols=274 Identities=9% Similarity=0.015 Sum_probs=179.3
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc-chhH
Q 003746 369 GYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV-ALDQ 444 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-~~~~ 444 (798)
.+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.... +.+...+..+...+...| ++++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 33344444444444444321 123334444444455555555555555554431 123334444444445555 5555
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|...+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 555555554432 22345566677777777777777777776553 23556777888888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-------CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003746 522 GVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR-------LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP 593 (798)
Q Consensus 522 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 593 (798)
. +.+...+..+...+...|++++|..+++++.+... .+.....+..+...|.+.|++++|.+.+++. ...|
T Consensus 189 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 189 A-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred C-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 2 23345777788888888888888888888876321 1223668888899999999999999988887 2233
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCh
Q 003746 594 -DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA-SKGRW 645 (798)
Q Consensus 594 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 645 (798)
+..+|..+...+...|++++|.+.+++++++.|+++..+..++.++. ..|+.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 57788889999999999999999999999999999888888888873 44543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.4e-17 Score=167.25 Aligned_cols=321 Identities=14% Similarity=0.112 Sum_probs=127.9
Q ss_pred hhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHH
Q 003746 239 GRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHA 318 (798)
Q Consensus 239 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 318 (798)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999653 677789999999999999999999888
Q ss_pred HHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 003746 319 LAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMI 398 (798)
Q Consensus 319 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 398 (798)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77774 45578899999999999999999888864 66679999999999999999999999987 3788999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHH
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVD 478 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 478 (798)
.++.+.|++++|++.++++ .++.||..++.+|...|+++.|...... +...+.....++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv---------- 214 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI---------- 214 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH----------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH----------
Confidence 9999999999999999887 2677888888888888888887433222 112222222344
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACR--HMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 555 (798)
..|.+.|++++|+.+++..... .+. ...|+.+..+++ +-+++.+.++.|..
T Consensus 215 ---------------------~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--- 268 (449)
T 1b89_A 215 ---------------------NYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--- 268 (449)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---
T ss_pred ---------------------HHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence 4445555555555555554432 222 223333333333 33445555555442
Q ss_pred hCCCcC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 556 EHRLEP------NSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 556 ~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+-+++| +...|.-++-+|...++++.|...+-+-+ |+..--........+-.+.|.--++..=-++..|
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 234444 47788889999999999999888765552 2322223333344455555544443333333333
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.7e-16 Score=168.97 Aligned_cols=254 Identities=11% Similarity=-0.005 Sum_probs=178.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+...|.+
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555544432 2233344444444445555555555555544443 2234445555555555
Q ss_pred cCCHHHHHHHHhhcCCCC---cchHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 003746 474 LGCVDNALEVFHGTEEKG---VSSWNA---------------LIIGFAMNGLADKSLEMFSEMKKSGVTPN---EITFVG 532 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~---~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ 532 (798)
.|++++|.+.|+++...+ ...+.. .+..+...|++++|+..|+++.+. .|+ ..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHH
Confidence 555555555555443221 111110 133334889999999999999884 444 678889
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHG 609 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 609 (798)
+...+...|++++|...|+++++. .| +...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999773 45 4788999999999999999999999987 3334 6889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 610 DHEMGERVGRKLVELQPDH-----------DGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 610 ~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
++++|...+++++++.|++ ...+..++.+|...|++++|.+++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999998887 78899999999999999999998763
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.3e-14 Score=160.88 Aligned_cols=365 Identities=12% Similarity=0.043 Sum_probs=256.4
Q ss_pred CCchHHHHHHHHHhh----cCCHHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCchh
Q 003746 226 RNIIASNSMIVLFGR----KGNVAEACRLFKEMPK-KDLVSWSALISCYEQ----NEMYEEALVLFMNMIDHRVMVDEVV 296 (798)
Q Consensus 226 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 296 (798)
.++..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 355556666666665 5666666666655432 244555556666655 566666666666655433
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----CCCHHHHHHHHHhcC-CCChhhHHHHHHHHH
Q 003746 297 VVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS----CGEITTAEKLFDAGH-NLDLISWNSMISGYL 371 (798)
Q Consensus 297 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~ 371 (798)
+...+..|..+|.. .+++++|.+.|++.. ..++..+..|...|.
T Consensus 110 -------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 110 -------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF 158 (490)
T ss_dssp -------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333444445554 455666666655422 123445555555555
Q ss_pred h----cCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----
Q 003746 372 K----CGSVEKARALFDAMIE-KDVVSWSTMISGYAQ----HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH---- 438 (798)
Q Consensus 372 ~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---- 438 (798)
. .++.++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+..+...+..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGV 235 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 5 6677777777776543 366777777777777 788888888888887764 44555555555554
Q ss_pred ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHc-----CCh
Q 003746 439 LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAMN-----GLA 508 (798)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~ 508 (798)
.++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+. +...+..+...|... ++.
T Consensus 236 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Confidence 678888888888887764 44566667777777 88999999999987754 566788888888887 899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHH
Q 003746 509 DKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG---LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKE 581 (798)
Q Consensus 509 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 581 (798)
++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .+++++
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999865 4456666777776656 889999999999763 357788889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 003746 582 AEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPD---HDGFHVLLSNIHAS 641 (798)
Q Consensus 582 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 641 (798)
|.+.|++.-...+...+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999987323467888999999988 89999999999999999854 66666666665543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.7e-16 Score=160.85 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=226.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
++..+..++..+...|++++|+++|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55567778888999999999999999998764 3345566667788899999999999999999875 346778888999
Q ss_pred hHHhcC-CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 470 MYMKLG-CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 470 ~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
.|...| ++++|.+.|++..+. +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 999999999987643 46789999999999999999999999999853 2235677778899999999999
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCChhH
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM----------SPDVATWGALLGACKKHGDHEM 613 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 613 (798)
|.++++++.+ ..| +...+..++..|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++
T Consensus 178 A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 178 AERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999976 345 4788999999999999999999999876 11 2346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 614 GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 614 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999977653
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=6.4e-15 Score=165.04 Aligned_cols=209 Identities=7% Similarity=-0.024 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHhHHHhhHHh-------cCCHH-------HHHHHHhhcCC---C-CcchHHHHHHHHHHc
Q 003746 444 QGKWIHAYIRKNGLKINSILGTTLIDMYMK-------LGCVD-------NALEVFHGTEE---K-GVSSWNALIIGFAMN 505 (798)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 505 (798)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ + +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4556666666552 3356666666666664 57765 78888887653 2 456788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH-HHhcCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL-LGRAGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 581 (798)
|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|++.++. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45553 36777777777788888888888888652 333 3333332222 335788888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 582 AEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG----FHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 582 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
|..+|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++. .+..........|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876 2234 5778888888888888888888888888887766554 5656666677778888888888777
Q ss_pred HhC
Q 003746 656 VRR 658 (798)
Q Consensus 656 ~~~ 658 (798)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=6.8e-15 Score=150.25 Aligned_cols=267 Identities=10% Similarity=0.033 Sum_probs=190.3
Q ss_pred hcCCHHHHHHHHHhcCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDV----VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 447 (798)
..|++..|...++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45555555555555443322 1233345566666666666654433 123445555555556666666666666
Q ss_pred HHHHHHHcCC-CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003746 448 IHAYIRKNGL-KINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526 (798)
Q Consensus 448 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 526 (798)
.++.+++.+. +.+...+..+...|.+.|++++|.+.+++ ..+...+..++..|.+.|+.++|++.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 6666665543 23455566677889999999999999998 456778999999999999999999999999985 466
Q ss_pred HHHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003746 527 EITF---VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGAL 601 (798)
Q Consensus 527 ~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 601 (798)
.... ...+..+...|++++|..+|+++++. .+.+...++.+..+|.+.|++++|.+.++++ ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5422 12233344568999999999999875 3446888999999999999999999999997 4445 68899999
Q ss_pred HHHHHHcCChhH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 602 LGACKKHGDHEM-GERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 602 ~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999876 5789999999999997544 3455666666655433
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=7.5e-16 Score=163.81 Aligned_cols=257 Identities=10% Similarity=-0.051 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHH
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYM 472 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 472 (798)
.|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555432 2234455555555555555555555555555543 224555666666666
Q ss_pred hcCCHHHHHHHHhhcCCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 003746 473 KLGCVDNALEVFHGTEEKG-------------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNEITFVGVLGACR 538 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~ 538 (798)
+.|++++|...|+++.+.+ ...+..+...|...|++++|++.|+++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 6777777776666654321 123445578888999999999999999885322 14678889999999
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
..|++++|..+|+++++. .| +...|..++..|.+.|++++|.+.|+++ ...| +..+|..+..+|...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999874 44 5788999999999999999999999987 3345 5889999999999999999999
Q ss_pred HHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 616 RVGRKLVELQPD------------HDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 616 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
..+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998877 366788999999999999999877654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=6e-14 Score=157.11 Aligned_cols=394 Identities=11% Similarity=0.065 Sum_probs=268.1
Q ss_pred CCchHHHHHHHHHhhcCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH
Q 003746 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPK--K-DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302 (798)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 302 (798)
.+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.+... |+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 36678888888 4788999999999999865 3 55689999999999999999999999998754 66555555554
Q ss_pred HH-hccCchHHHHH----HHHHHHHh-CCcc-chhHHHHHHHHHHh---------CCCHHHHHHHHHhcCC-CCh---hh
Q 003746 303 AC-ANLTVVKAGTS----VHALAVKI-GIEC-YINLQNALIHMYSS---------CGEITTAEKLFDAGHN-LDL---IS 362 (798)
Q Consensus 303 a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~-~~~---~~ 362 (798)
.. ...|+.+.+++ ++..+++. |..+ +..+|...+....+ .|+++.|.++|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666655 66666654 5543 46778888877665 6889999999988543 221 23
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHhc------C-------CCC--------HHHHHHHHHHHHhC----
Q 003746 363 WNSMISGY-------------LKCGSVEKARALFDAM------I-------EKD--------VVSWSTMISGYAQH---- 404 (798)
Q Consensus 363 ~~~li~~~-------------~~~g~~~~A~~~~~~m------~-------~~~--------~~~~~~li~~~~~~---- 404 (798)
|....... .+.++++.|..++..+ . .++ ...|...+.....+
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 1234566677666541 1 111 24566665443332
Q ss_pred CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------ccchh-------HHHHHHHHHHHcCCCCcHHHHhH
Q 003746 405 DQF----SETLSLFMEMQHHGIRPDEATLVSVISACTH-------LVALD-------QGKWIHAYIRKNGLKINSILGTT 466 (798)
Q Consensus 405 g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 466 (798)
++. ++|+.+|++..... +-+...+......+.+ .|+++ +|..+++..++.-.+.+..++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 36777888877642 2345566666665554 57776 77888888776323446777888
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC---Cc-chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK---GV-SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGA-CRHM 540 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 540 (798)
++..+.+.|++++|..+|++..+. +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 888888888888888888876542 22 36888888888888888888888888774 333 2333332222 3357
Q ss_pred CcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChhH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSPD--VATWGALLGACKKHGDHEM 613 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~ 613 (798)
|+.++|..+|++.++. .| +...+..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.
T Consensus 405 ~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred CChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888764 34 4677888888888888888888888876 22332 4478887887888888888
Q ss_pred HHHHHHHHHhcCCCC
Q 003746 614 GERVGRKLVELQPDH 628 (798)
Q Consensus 614 A~~~~~~~~~~~p~~ 628 (798)
+..+.+++.+..|++
T Consensus 482 ~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 482 ILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCchh
Confidence 888888888888754
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.9e-13 Score=151.34 Aligned_cols=336 Identities=12% Similarity=0.012 Sum_probs=274.2
Q ss_pred cCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----CCCHHHHHHHHHhcC-CCChhhHHHHHHHHHh----cCCHH
Q 003746 307 LTVVKAGTSVHALAVKIGIECYINLQNALIHMYSS----CGEITTAEKLFDAGH-NLDLISWNSMISGYLK----CGSVE 377 (798)
Q Consensus 307 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~ 377 (798)
.++.+.|...+....+.| +...+..|..+|.. .+++++|.+.|++.. ..++..+..|...|.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 445555555555555443 44566778888888 899999999998743 3466778888888888 88999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchhHHHHH
Q 003746 378 KARALFDAMIEK-DVVSWSTMISGYAQ----HDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH----LVALDQGKWI 448 (798)
Q Consensus 378 ~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~ 448 (798)
+|...|+...+. ++.++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 999999987654 67788889888887 789999999999998875 56677777777776 7999999999
Q ss_pred HHHHHHcCCCCcHHHHhHHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHH
Q 003746 449 HAYIRKNGLKINSILGTTLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMK 519 (798)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 519 (798)
+....+.| +...+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 99999876 56677788888886 89999999999987654 56678888888888 899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC---CHHHHHHHHHhCCC
Q 003746 520 KSGVTPNEITFVGVLGACRHM-----GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG---MLKEAEELIESMPM 591 (798)
Q Consensus 520 ~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 591 (798)
+.| +...+..+...+... ++.++|..+|++..+. .+...+..|..+|.+.| ++++|.+.|++.-.
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 764 455667777777776 8999999999999763 24567788888888867 88999999998833
Q ss_pred CCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 592 SPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
..+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 360 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 360 KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3578899999999998 899999999999998864 57789999999998 8999999999999988663
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.5e-15 Score=153.47 Aligned_cols=247 Identities=9% Similarity=0.014 Sum_probs=202.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDE--ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC 476 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 476 (798)
.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+......+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345567999999999876533 34543 3446677899999999999875543 245677888889999999999
Q ss_pred HHHHHHHHhhcCC----C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE----K-GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 477 ~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
.++|.+.++++.. + +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998642 3 456778888999999999999999987 3566788888999999999999999999
Q ss_pred HHHHhCCCcCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 552 SMIQEHRLEPNSKHY---GCMVDLLGRAGMLKEAEELIESM--PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 552 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99874 4663221 23445566679999999999998 3345788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 003746 627 DHDGFHVLLSNIHASKGRWDD-VLEVRGMMVRRGV 660 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 660 (798)
+++.++..++.++...|++++ +.++++++.+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999986 5788888877543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.5e-15 Score=161.58 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHhcccchhHHHHHH
Q 003746 374 GSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLS-LFMEMQHHGI-RP--DEATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 374 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~-~p--d~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
+.++.+...|+.+...+.. .+...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3344578888888 7776543211 11 3455777888899999999999999
Q ss_pred HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003746 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN 526 (798)
Q Consensus 450 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 526 (798)
..+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++... .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 44677888999999999999999999998763 35778999999999999999999999999985 344
Q ss_pred HHH-HHH---------------HHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 527 EIT-FVG---------------VLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 527 ~~t-~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
... +.. .+..+...|++++|..+|+++++...-.++...+..++..|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332 211 233444889999999999999875322224788999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334 68899999999999999999999999999999999999999999999999999999999998764
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=9.1e-16 Score=163.13 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIG 501 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 501 (798)
+...+......+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999999875 34688899999999999999999999998764 356799999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-----------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMV 570 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 570 (798)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++++...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 44432 223457788999999999999999987533222578899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 571 DLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
..|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003746 649 LEVRGMMVRR 658 (798)
Q Consensus 649 ~~~~~~m~~~ 658 (798)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-13 Score=152.38 Aligned_cols=368 Identities=9% Similarity=-0.027 Sum_probs=202.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhC-CccchhHHHHHH
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIG-IECYINLQNALI 336 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li 336 (798)
....||.|...+...|++++|++.|++..+. ........ .+....+++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla 101 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYA 101 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHH
Confidence 3457899999999999999999999886541 00000000 011223445555
Q ss_pred HHHHhCCCHHHHHHHHHhc-------CC----CChhhHHHHHHHHHhc--CCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 003746 337 HMYSSCGEITTAEKLFDAG-------HN----LDLISWNSMISGYLKC--GSVEKARALFDAMI---EKDVVSWSTMISG 400 (798)
Q Consensus 337 ~~y~~~g~~~~A~~~~~~~-------~~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~---~~~~~~~~~li~~ 400 (798)
..|...|++++|...+++. .. ....++..+..++.+. +++++|...|++.. +.++..+..+...
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555555431 00 1123344333333333 34666766666553 2244444444433
Q ss_pred ---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 401 ---YAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACT----HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 401 ---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
+...++.++|++.|++..+.. +.+..++..+...+. ..++.++|.+.++...+.. +.+..++..+...|.+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 334566667777777666542 123333333333332 2355666777777666654 3345556667777777
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAM-------------------NGLADKSLEMFSEMKKSGVTPN-EITF 530 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~ 530 (798)
.|++++|...|++..+. +..+|..+...|.. .+..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 77777777777765532 33455555544432 23356777788877764 343 3467
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc----hHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK----HYGCMVDL-LGRAGMLKEAEELIESM-PMSPDVATWGALLGA 604 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 604 (798)
..+...+...|++++|...|+++++. .|+.. .+..+... +...|+.++|++.|++. .+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---
Confidence 77778888889999999999888752 33321 23333332 34678889998888876 555654433322
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceE
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMI 669 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 669 (798)
.+.+.+++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456677888889999999999999999999999999999999988765544444454
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=8.5e-15 Score=152.67 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISAC 436 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 436 (798)
...|..+...+...|++++|..+|+++. ..+...|..+...+...|++++|+..|+++.... +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555566666666666666666553 2245556666666666666666666666655532 22333444444444
Q ss_pred hcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHH-HH-HHHHcCChHHHHHH
Q 003746 437 THLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNAL-II-GFAMNGLADKSLEM 514 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l 514 (798)
...|++++|...+..+.+..... ...+..+.... ++......+ .. .+...|++++|++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQY-EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-TTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 44444444444444444332110 00010000000 000000111 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003746 515 FSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS 592 (798)
Q Consensus 515 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 592 (798)
++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++..|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99988753 235668888889999999999999999999763 34 4778899999999999999999999987 333
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 593 P-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD------------HDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 593 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
| +..+|..+...+...|++++|.+.+++++++.|+ ++..+..++.+|...|++++|.++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 6889999999999999999999999999999999 7888999999999999999999988644
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.7e-14 Score=156.44 Aligned_cols=348 Identities=9% Similarity=-0.005 Sum_probs=201.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCc-hhHHHHHHHHh--ccCchHHHHHHHHHHHHhCCccc
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDH-----R-VMVDE-VVVVSVLSACA--NLTVVKAGTSVHALAVKIGIECY 328 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~ 328 (798)
..++|+.+...|...|++++|...|++..+. + ..++. .++...-.++. ..++.+.|...+..+++.. +.+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4568999999999999999999999887542 1 11222 23333333333 3457888999998888765 233
Q ss_pred hhHHHHHHHH---HHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcC---CCCHHHHH
Q 003746 329 INLQNALIHM---YSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLK----CGSVEKARALFDAMI---EKDVVSWS 395 (798)
Q Consensus 329 ~~~~~~li~~---y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~---~~~~~~~~ 395 (798)
+..+..+... +...++.++|.+.+++ ..+.+...+..+...+.. .|+.++|.+.+++.. ..+...|.
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~ 251 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4444444444 4456777788887776 234455556555554443 456778888887653 34677788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPD-EATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+...|...|++++|+..|++..+. .|+ ..++..+..++...+... ... ............
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~ 313 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHH
Confidence 8888888889999998888888775 344 333433333322111000 000 000111112223
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCcHHHHHH
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI--TFVGVLG-ACRHMGLVDEGHR 548 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~ 548 (798)
+..+.|...|+...+ .+..+|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|+.
T Consensus 314 ~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 346777777776553 356789999999999999999999999999854333322 2222222 3457899999999
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
.|++.++ +.|+....... .+.+.+++++. ... .+..+|..|...|...|++++|++.|++++++.|
T Consensus 394 ~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999876 56664332222 23334444433 223 4678999999999999999999999999999999
Q ss_pred CCcchHHHHH
Q 003746 627 DHDGFHVLLS 636 (798)
Q Consensus 627 ~~~~~~~~l~ 636 (798)
.+|.....+|
T Consensus 462 ~~p~a~~~~G 471 (472)
T 4g1t_A 462 LIPSASSWNG 471 (472)
T ss_dssp ----------
T ss_pred CCCcHhhcCC
Confidence 9887766554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=172.79 Aligned_cols=147 Identities=13% Similarity=0.146 Sum_probs=120.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMI-------EKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSV 432 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 432 (798)
..|||+||++||+.|++++|.++|++|. .+|++|||+||.+|++.|+.++|.++|++|...|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3578888888889999999999997763 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcC
Q 003746 433 ISACTHLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----GVSSWNALIIGFAMNG 506 (798)
Q Consensus 433 l~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 506 (798)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 788999999999999999999999998888776555555554433321 1334444556666555
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=173.94 Aligned_cols=151 Identities=9% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQ---HHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL 467 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 467 (798)
.++||+||.+|++.|+.++|.++|++|. ..|+.||.+||+++|.++++.|++++|.++|+.|.+.|+.||..+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998875 4578889888888888888888888888888888888888888887777
Q ss_pred HhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 547 (798)
|+++++.|+. .++|.++|++|.+.|+.||.+||++++.++.+.+-++..
T Consensus 207 I~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V- 255 (1134)
T 3spa_A 207 LQCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV- 255 (1134)
T ss_dssp HHHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH-
T ss_pred HHHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH-
Confidence 7766665542 245667888999999999999999999877765444443
Q ss_pred HHHHHHHHhCCCcCC------cchHHHHHHHHHhcC
Q 003746 548 RHFNSMIQEHRLEPN------SKHYGCMVDLLGRAG 577 (798)
Q Consensus 548 ~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g 577 (798)
+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 256 ---rkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ---HKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ---GGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ---HHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 33322 34433 556667888888766
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=4.1e-14 Score=147.43 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=182.1
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAG---HNLDLISWNSMISGYLKCGSVEKARALFDAMI---EKDVVSWSTMISGY 401 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 401 (798)
+...+..+...+.+.|++++|..+|++. .+.+...|..+...+.+.|++++|...|+++. ..+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 4455677888999999999999999873 44567789999999999999999999999874 34678899999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHH-Hh-hHHhcCCHH
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEAT-LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTL-ID-MYMKLGCVD 478 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 478 (798)
...|++++|++.|+++... .|+... +..+...+ ++......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 9999999999999999875 343322 22221000 001111112 11 244555666
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 479 NALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 479 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+|.+.++++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666655442 234566666666777777777777777766632 22345666667777777777777777777765
Q ss_pred hCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 556 EHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-------------DVATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 556 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
. .| +...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...+++
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 33 3566777777777777777777777765 1122 356777888888888888888888777
Q ss_pred HHhcCC
Q 003746 621 LVELQP 626 (798)
Q Consensus 621 ~~~~~p 626 (798)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 665444
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=5.2e-14 Score=137.14 Aligned_cols=194 Identities=15% Similarity=0.087 Sum_probs=156.6
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGV 533 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 533 (798)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456667778888899999999999999987643 4678999999999999999999999999984 5654 577888
Q ss_pred HHHHHhc-----------CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003746 534 LGACRHM-----------GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGA 600 (798)
Q Consensus 534 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 600 (798)
..++... |++++|...|++.++ +.|+ ...+..+..+|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 999999999999987 4564 788899999999999999999999987 22278889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-13 Score=137.70 Aligned_cols=228 Identities=10% Similarity=0.008 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhH
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMY 471 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 471 (798)
..|..+...+...|++++|+..|++..... .+...+..+..++...|++++|...+..+++......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 456666666777777777777777666554 4444444444444444444444444444433210000
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003746 472 MKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFN 551 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 551 (798)
.+.. .....|..+...|...|++++|++.|++.... .|+. ..+...|++++|...++
T Consensus 73 ---~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 73 ---ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH
T ss_pred ---cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH
Confidence 0000 00356777778888888888888888888773 4553 34566788999999999
Q ss_pred HHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 552 SMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 552 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
++.+ ..| +...+..+...|...|++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++++..|++
T Consensus 130 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 130 AEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 8876 344 4677888999999999999999999887 22 3468889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..+..++.+|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.2e-13 Score=136.40 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003746 360 LISWNSMISGYLKCGSVEKARALFDAMIE--KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG--IRPD----EATLVS 431 (798)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~~ 431 (798)
...|..+...+...|++++|...|++... .+...|..+...|...|++++|+..|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987632 678899999999999999999999999987642 1112 244444
Q ss_pred HHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHH
Q 003746 432 VISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKS 511 (798)
Q Consensus 432 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 511 (798)
+...+...|++++|...+..+.+... + ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~--~--------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHR--T--------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--C--------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc--h--------------------------------------hHHHHHHhHHHHH
Confidence 44455555555555555555444321 1 1234455666777
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 512 LEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+..++++... .|+. ..+..+...+...|++++|...++++++.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777663 3433 356666677777888888888888876631 224677778888888888888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCCcchHHHHHH
Q 003746 590 PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSN 637 (798)
Q Consensus 590 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 637 (798)
...| +..+|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 2234 57788889999999999999999999999888 777666655543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=7.6e-13 Score=134.02 Aligned_cols=240 Identities=10% Similarity=-0.111 Sum_probs=175.3
Q ss_pred CCChHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHH
Q 003746 404 HDQFSETLSLFMEMQHHGIR--P-DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNA 480 (798)
Q Consensus 404 ~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 480 (798)
.|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666554211 1 23445555556666666666666666666553 23566777788888888888888
Q ss_pred HHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Q 003746 481 LEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEH 557 (798)
Q Consensus 481 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 557 (798)
.+.|++..+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887664 3567899999999999999999999999988 4566665555666667789999999999888764
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 558 RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 558 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...+++++++.|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4778888889999999999887 33332 5788999999999999999999999999999987554
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 003746 632 HVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~ 652 (798)
+ +.++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 55778889999887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.6e-12 Score=131.45 Aligned_cols=238 Identities=10% Similarity=0.021 Sum_probs=124.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCC
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGC 476 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 476 (798)
..+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.+..+ ....+..+...|.+.|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444444444444443321 1112233333334444444444444444444321111 12224445555555555
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNS 552 (798)
Q Consensus 477 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 552 (798)
+++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+.. .+..+...+...+++++|.+.|++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554432 23445666666666666666666666665553 33332 344444233344466666666666
Q ss_pred HHHhCCCcCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCChhHHHHHH
Q 003746 553 MIQEHRLEPN-SKHYGCMVDLLGRAGM---LKEAEELIESM----PMSPD------VATWGALLGACKKHGDHEMGERVG 618 (798)
Q Consensus 553 ~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 618 (798)
+++. .|+ ...+..+...+...|+ +++|...++++ ...|+ ..+|..+...|...|++++|.+.+
T Consensus 168 a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 168 VLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6552 343 4555556666666665 55555555544 11122 246777888888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhc
Q 003746 619 RKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 619 ~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
+++++++|+++...-.+..+....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999988777776554443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=4.3e-12 Score=138.35 Aligned_cols=376 Identities=10% Similarity=0.032 Sum_probs=189.5
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC-CCchHHHHHHHHHhhcCCH---HHHHHHHhcCCCCCcccHHHHHHHHHhcC-----C
Q 003746 204 LAGYVNADNVEEAKFIYNKMPE-RNIIASNSMIVLFGRKGNV---AEACRLFKEMPKKDLVSWSALISCYEQNE-----M 274 (798)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~ 274 (798)
...+.+.|++++|+++|++..+ .++..+..|..+|...|+. ++|.+.|++..+.+...+..|...+...| +
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3344455556666666555433 2445555566666666666 77777777766556667777776555555 6
Q ss_pred hhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHH---HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHH
Q 003746 275 YEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKA---GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKL 351 (798)
Q Consensus 275 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 351 (798)
+++|+..|++..+.|... .+..+-..+...+..+. +.+.+......| +......|..+|...+.+++
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~---- 159 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ---- 159 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG----
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc----
Confidence 677888887777755322 33333333332222111 222222222222 22333334444442222111
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHH
Q 003746 352 FDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHD---QFSETLSLFMEMQHHGIRPDEAT 428 (798)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t 428 (798)
..+.+..+++.....++.++..+...|...| +.++|++.|++....| .++...
T Consensus 160 -----------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 160 -----------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp -----------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred -----------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 3445556666666666667777777777777 7777777777776665 222222
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHH-H--HHc
Q 003746 429 LVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIG-F--AMN 505 (798)
Q Consensus 429 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~ 505 (798)
+..+...+... ....+++++|.+.|++....+...+..+... | ...
T Consensus 216 ~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 216 VDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 22222222211 1112566666666666552244556666555 3 346
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----c
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG-----LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----A 576 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 576 (798)
|++++|++.|++..+.| +...+..+...|. .| ++++|.++|++.. .-+...+..|..+|.. .
T Consensus 265 ~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCC
Confidence 77777777777777765 4455555555555 44 7788888877663 2245666667766665 3
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCChhHHHH
Q 003746 577 GMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS--KGRWDDVLE 650 (798)
Q Consensus 577 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~ 650 (798)
.++++|...|++.-..-+......|...|.. ..|.++|...++++.+..+.. ....+..+... .++.++|.+
T Consensus 336 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~ 413 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQR 413 (452)
T ss_dssp CCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHH
Confidence 3788888888776322344455566666653 357888888888887766543 33334333222 234445555
Q ss_pred HHHHH
Q 003746 651 VRGMM 655 (798)
Q Consensus 651 ~~~~m 655 (798)
+.+.-
T Consensus 414 ~~~~~ 418 (452)
T 3e4b_A 414 LVQQE 418 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=4.8e-12 Score=126.27 Aligned_cols=197 Identities=12% Similarity=-0.013 Sum_probs=140.7
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555666666677777777777766543 245567777777777777777777777777642 22445667777777
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 614 (798)
...|++++|.++++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877754 223443 566777777788888888888887776 2223 567777888888888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
...++++++..|++...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888887778888888888888888888888776643
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=8.5e-12 Score=121.79 Aligned_cols=197 Identities=13% Similarity=-0.010 Sum_probs=153.7
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
+...+..+...|.+.|++++|.+.|+...+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777777888888888888876553 345678888888888888888888888887742 2345577777888
Q ss_pred HHhc-CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 537 CRHM-GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 537 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
+... |++++|..+++++.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 333443 567778888888889999988888876 2233 5778888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 613 MGERVGRKLVELQP-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 613 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998888 88888888888888889999998888887654
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=5e-12 Score=133.49 Aligned_cols=242 Identities=11% Similarity=0.020 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccc-hhHHHHHHHHHHHcCCCCcHHHHhHHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRP-DEATLVSVISACTHLVA-LDQGKWIHAYIRKNGLKINSILGTTLI 468 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 468 (798)
...|+.+...+.+.|++++|+..|++.... .| +...+..+..++...|+ +++|...++.+++... .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 456777788888888888888888888774 34 45566677777777885 8888888888887653 3667788888
Q ss_pred hhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCcH
Q 003746 469 DMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRH-MGLV 543 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~ 543 (798)
.+|.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888888999999998887764 35678999999999999999999999999884 454 4578888888888 5665
Q ss_pred HHH-----HHHHHHHHHhCCCcCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-----
Q 003746 544 DEG-----HRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAG--MLKEAEELIESMPMSP-DVATWGALLGACKKHG----- 609 (798)
Q Consensus 544 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g----- 609 (798)
++| +..|+++++ +.|+ ...|..+..+|.+.| ++++|.+.++++...| +...+..++..|...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 588888876 4664 778888888898888 6899999888874445 5678888888888764
Q ss_pred ---C-hhHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 003746 610 ---D-HEMGERVGRKL-VELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 610 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~ 640 (798)
+ .++|+++++++ .+++|....+|..++..+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 8999999888888876654
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=3.2e-11 Score=122.03 Aligned_cols=223 Identities=10% Similarity=-0.030 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccchhHHHHHHHHHHHcCCCCcHHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH----LVALDQGKWIHAYIRKNGLKINSILGT 465 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (798)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666666677777777776666522 23334444444444 455555555555544443 333444
Q ss_pred HHHhhHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 466 TLIDMYMK----LGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 466 ~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
.+..+|.. .|++++|.+.|++..+. +..++..+...|.. .|++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444444 45555555444443322 23344444444444 444455555554444432 22333333334
Q ss_pred HHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 003746 537 CRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----H 608 (798)
Q Consensus 537 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 608 (798)
+.. .+++++|..+|++..+. .+...+..+...|.. .
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence 433 44444444444444331 233444445555555 5
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 659 (798)
+++++|+..++++++..| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555443 3444555555555 555555555555554433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=4.1e-11 Score=121.19 Aligned_cols=192 Identities=9% Similarity=-0.067 Sum_probs=161.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK-GVSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVGVL 534 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 534 (798)
+...+..+...|.+.|++++|.+.|++..++ +..++..+...|.. .|++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4455666777888888899998888877655 45678888888888 999999999999998875 667788888
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003746 535 GACRH----MGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESMPMSPDVATWGALLGACK 606 (798)
Q Consensus 535 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 606 (798)
..+.. .+++++|.++|++..+. + +...+..+..+|.+ .|++++|.+.+++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888 99999999999999763 2 67788889999999 9999999999998722236778888988998
Q ss_pred H----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 607 K----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 607 ~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
. .+++++|+..++++++.. ++..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 8 899999999999999874 46788999999999 9999999999999887654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=3.1e-11 Score=120.31 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
...|..+...|...|++++|++.|+++.... +.+. ..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence 4567777777888888888888887776542 1123 334445555
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHH
Q 003746 471 YMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 546 (798)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 23456667777777778888888888877764345544 4667777888888999999
Q ss_pred HHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 547 HRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
..+++++.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|.+.++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999888763 34 4677888899999999999999999887 333 4677888899999999999999999999999
Q ss_pred cCCCCcchHHH
Q 003746 624 LQPDHDGFHVL 634 (798)
Q Consensus 624 ~~p~~~~~~~~ 634 (798)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=3.9e-12 Score=126.05 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=142.0
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA 536 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 536 (798)
....+..+...+.+.|++++|...|++..+. +...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4455666777778888888888888876543 45678888888888888888888888888742 2345677778888
Q ss_pred HHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999988887632 235677888888888999999999888876 22 23677888888888999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888888889999999999999999998887643
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2.6e-12 Score=138.64 Aligned_cols=261 Identities=11% Similarity=0.013 Sum_probs=178.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhcccchhHHHHHHHHHHHc----C-CCCcHHHHh
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGIRPD-E----ATLVSVISACTHLVALDQGKWIHAYIRKN----G-LKINSILGT 465 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 465 (798)
.+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...+..+++. + .......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555666666666666655542 22 1 23444455555566666666655555432 1 112334566
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEK---------GVSSWNALIIGFAMNGL-----------------ADKSLEMFSEMK 519 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 519 (798)
.+...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6677777777777777777654421 13467777888888888 888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 520 KS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 520 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11122 236777778888999999999999988653211112 237788999999999999999998876
Q ss_pred ---CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 590 ---PMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 590 ---~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+... ...+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 25678889999999999999999999998875433 3478889999999999999999999887
Q ss_pred hC
Q 003746 657 RR 658 (798)
Q Consensus 657 ~~ 658 (798)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=5.4e-12 Score=135.76 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=166.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPD----EATLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILG 464 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 464 (798)
|......+...|++++|+..|++....+. .+ ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444444444555555555544444311 11 123333444444445555555444443322 111 123345
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCC--------------------hHHHHHHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGL--------------------ADKSLEMF 515 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 515 (798)
..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55666667777777777666654421 1 2367777777777787 78888877
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 003746 516 SEMKKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELI 586 (798)
Q Consensus 516 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 586 (798)
++.... +..|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775441 11222 235677778888889999999998888653211122 337788888999999999999888
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHH
Q 003746 587 ESM----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 587 ~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
++. +..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876 11122 5577888889999999999999999998765443 457778999999999999999999
Q ss_pred HHHHh
Q 003746 653 GMMVR 657 (798)
Q Consensus 653 ~~m~~ 657 (798)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=7.5e-12 Score=136.41 Aligned_cols=343 Identities=11% Similarity=0.029 Sum_probs=206.1
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCH---HHHHHHHHhcCCCChhhHHHHHHHHHhcC--
Q 003746 300 VLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGEI---TTAEKLFDAGHNLDLISWNSMISGYLKCG-- 374 (798)
Q Consensus 300 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 374 (798)
+.....+.|+++.|...+..+.+.| +...+..|..+|...|+. ++|.+.|++....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566788889999988888776 333445566677777777 88888888765556667777777555554
Q ss_pred ---CHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHH
Q 003746 375 ---SVEKARALFDAMIEK-DVVSWSTMISGYAQHDQFS---ETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKW 447 (798)
Q Consensus 375 ---~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 447 (798)
+.++|...|++..++ +...+..|...|...+..+ ++.+.+.+....|. ......+...+...+.++.+..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 677888888776544 4456777777777665533 44555555554443 3344445555555554444443
Q ss_pred HHHHHHHcCCCCcHHHHhHHHhhHHhcC---CHHHHHHHHhhcCCCCc---chHHHHHHHHHHc----CChHHHHHHHHH
Q 003746 448 IHAYIRKNGLKINSILGTTLIDMYMKLG---CVDNALEVFHGTEEKGV---SSWNALIIGFAMN----GLADKSLEMFSE 517 (798)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~----g~~~~A~~l~~~ 517 (798)
....+.+.-...++..+..|..+|.+.| +.++|.+.|++..+.+. ..+..+...|... +++++|++.|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 3333332222233346777888888888 78888888887665432 2335666666544 578888888888
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcC-----CHHHHHHHHHhC
Q 003746 518 MKKSGVTPNEITFVGVLGA-C--RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAG-----MLKEAEELIESM 589 (798)
Q Consensus 518 m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 589 (798)
.. .| +...+..+... + ...++.++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 76 32 33344444444 3 4577888888888887652 3 5566667777776 45 888888888888
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 590 PMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 590 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
- ..+...+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7 5567777777776665 33788888888887763 456677788888775 4578888888888877664
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=5.4e-12 Score=124.98 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
....|..+...+...|++++|+..|+++... .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445666666777777777777777776653 22 12334444555
Q ss_pred hHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
.|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55556666666666655432 245567777777888888888888888887743 23455777788888889999999
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999888763 2235778888899999999999999999887 223 46788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHH
Q 003746 625 QPDHDGFHVLLSNIHA 640 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~ 640 (798)
.|+++..+..++.+..
T Consensus 223 ~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGH 238 (243)
T ss_dssp CTTCHHHHHHHTC---
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999888777665443
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=7.3e-12 Score=130.54 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=168.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHHhHH
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPD-----EATLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILGTTL 467 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 467 (798)
...+...|++++|+..|+++.... |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555544432 21 123334444444455555555544443322 111 123455566
Q ss_pred HhhHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 003746 468 IDMYMKLGCVDNALEVFHGTEE-----KG----VSSWNALIIGFAMNGL--------------------ADKSLEMFSEM 518 (798)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 518 (798)
...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777777665432 11 2367777777777787 78888877776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 519 KKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 519 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
... +..|. ...+..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 11122 235677778888899999999999888653211112 347788889999999999999998876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 590 ----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 590 ----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 5577888899999999999999999998865543 336778999999999999999999988
Q ss_pred HhC
Q 003746 656 VRR 658 (798)
Q Consensus 656 ~~~ 658 (798)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=7.9e-10 Score=124.52 Aligned_cols=449 Identities=9% Similarity=0.043 Sum_probs=260.9
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 003746 110 NVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGD---LSAAR 186 (798)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~ 186 (798)
....+.+..|++.+... +-|..+|..+++.+.+.+++..++.+++.+++. ++.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34556666667666554 568888999999988888999999999999887 47778888888888888888 99999
Q ss_pred HHHccCC--C---CCcchHHHHHHHHHhCCCH----HHHH----HHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 187 KLFDESP--V---LDLVSWNSILAGYVNADNV----EEAK----FIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 187 ~~f~~~~--~---~d~~~~~~li~~~~~~g~~----~~A~----~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
.+|++.. . +++..|...+.-..+.++. +++. ++|+... ....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl------------------------~~vG- 178 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVV------------------------DKCA- 178 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHH------------------------HHTT-
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH------------------------HHhC-
Confidence 9998754 2 6666777766654443332 2222 3333211 0000
Q ss_pred CCCC-CcccHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 003746 254 MPKK-DLVSWSALISCYE---------QNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKI 323 (798)
Q Consensus 254 ~~~~-~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 323 (798)
+-.+ +...|...+.-.. .+++.+.+..+|++.+......-..+|..... +.+.-+...+..+....
T Consensus 179 ~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~--- 254 (679)
T 4e6h_A 179 IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL--- 254 (679)
T ss_dssp TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---
T ss_pred cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---
Confidence 0011 1223444443222 22345566666666653111000111111000 00000000011111110
Q ss_pred CCccchhHHHHHHHHHHhCCCHHHHHHHHHh------cCC----CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 003746 324 GIECYINLQNALIHMYSSCGEITTAEKLFDA------GHN----LDLISWNSMISGYLKCGSVEKARALFDAMIE----- 388 (798)
Q Consensus 324 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 388 (798)
..+++.|...+.. ... ....+.+ ....+.
T Consensus 255 ------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~------------------~~~~p~~~~~~ 298 (679)
T 4e6h_A 255 ------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQAT------------------ESNLPKPNEYD 298 (679)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC------------------TTTSCCTTCCC
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHhHhhccccccccch------------------hccCCCCchhH
Confidence 0011122222211 000 0000000 000000
Q ss_pred -CCHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHH-HHHHHHHHcCCCC
Q 003746 389 -KDVVSWSTMISGYAQHD-------QFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGK-WIHAYIRKNGLKI 459 (798)
Q Consensus 389 -~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~ 459 (798)
.....|...+.---.++ ..+.+..+|++.... ..-+...|.....-+...|+.+.|. .+++..+.. .+.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 01233444444332222 122345566666554 2334555555555566667777775 788777764 344
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-------------------------CcchHHHHHHHHHHcCChHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK-------------------------GVSSWNALIIGFAMNGLADKSLEM 514 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~li~~~~~~g~~~~A~~l 514 (798)
+..++-..+....+.|+++.|.++|+.+... ....|-..+....+.|..+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666777777778888888888888766531 123688888888888999999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 003746 515 FSEMKKS-GVTPNEITFVGVLGACRHM-GLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM 591 (798)
Q Consensus 515 ~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 591 (798)
|.+..+. +. +....|......-.+. ++.+.|..+|+..++.+ +-+...+...++.....|+.+.|..+|++. ..
T Consensus 457 f~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999875 21 1233343333222333 55899999999998863 334666778899899999999999999997 22
Q ss_pred CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 592 SP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 592 ~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 23 3568999999999999999999999999999999864
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.7e-11 Score=115.71 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=137.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHH
Q 003746 491 GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGC 568 (798)
Q Consensus 491 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 568 (798)
+...|..+...|...|++++|++.|++..+. .|+. ..+..+..++.+.|++++|...+..+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 3456888888888888888888888888874 5554 47788888888999999999999888663 34 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWD 646 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 646 (798)
+...+...+++++|.+.+++. ...| +..+|..+...+...|++++|++.++++++++|+++.++..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888888999999999988877 3334 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 003746 647 DVLEVRGMMVRRG 659 (798)
Q Consensus 647 ~a~~~~~~m~~~~ 659 (798)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887654
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=5e-11 Score=116.22 Aligned_cols=207 Identities=12% Similarity=0.066 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
+...|..+...+...|++++|++.|+++.... +.+.. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHH
Confidence 45567777777777777777777777766542 11233 3444555
Q ss_pred hHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 470 MYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMN-GLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
.|...|++++|.+.|++..+ .+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 55555666666555555432 2345667777777788 888888888888877434454 346777778888889999
Q ss_pred HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003746 545 EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-S-PDVATWGALLGACKKHGDHEMGERVGRK 620 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (798)
+|...++++.+. .| +...+..++..|.+.|++++|.+.++++ .. + .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999998888763 34 4677888888999999999999998887 22 2 4667777788888899999999999999
Q ss_pred HHhcCCCCcchHHHH
Q 003746 621 LVELQPDHDGFHVLL 635 (798)
Q Consensus 621 ~~~~~p~~~~~~~~l 635 (798)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999988766554
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=7.6e-12 Score=132.07 Aligned_cols=225 Identities=10% Similarity=0.063 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC-HHHHHHHHhhcCC---CCcchHHHHHHHH
Q 003746 427 ATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC-VDNALEVFHGTEE---KGVSSWNALIIGF 502 (798)
Q Consensus 427 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 502 (798)
..+..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++... .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 445666677788999999999999999875 3467888999999999997 9999999998774 3567999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHh-cCCH
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGR-AGML 579 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 579 (798)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+++++ +.| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999984 555 45888899999999999999999999987 456 47889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------
Q 003746 580 KEA-----EELIESM-PMSP-DVATWGALLGACKKHG--DHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG------- 643 (798)
Q Consensus 580 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 643 (798)
++| ++.+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..|+.+|...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777766 4445 6789999999999888 689999999998 999999999999999999875
Q ss_pred --ChhHHHHHHHHH-HhC
Q 003746 644 --RWDDVLEVRGMM-VRR 658 (798)
Q Consensus 644 --~~~~a~~~~~~m-~~~ 658 (798)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999988 553
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=2.6e-11 Score=117.85 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=92.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003746 358 LDLISWNSMISGYLKCGSVEKARALFDAMIE---KDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVIS 434 (798)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 434 (798)
++...|..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++.... .|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence 3444555555555555555555555554422 23445555555555555555555555555443 222
Q ss_pred HHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc-----------CCHHHHHHHHhhcCC---CCcchHHHHHH
Q 003746 435 ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-----------GCVDNALEVFHGTEE---KGVSSWNALII 500 (798)
Q Consensus 435 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~ 500 (798)
+...+..+...|.+. |++++|...|++..+ .+...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 222333333333333 555555555555432 23445555566
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML 579 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 579 (798)
.|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+++++ ..| +...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence 6666666666666666666544 4455555566666666666666666666654 234 345555556666666666
Q ss_pred HHHHHHHHhC
Q 003746 580 KEAEELIESM 589 (798)
Q Consensus 580 ~~A~~~~~~~ 589 (798)
++|.+.+++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=9.5e-12 Score=133.80 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=178.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CH
Q 003746 328 YINLQNALIHMYSSCGEITTAEKLFDAG---HNLD----LISWNSMISGYLKCGSVEKARALFDAMIEK---------DV 391 (798)
Q Consensus 328 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~ 391 (798)
....+..+...+.+.|++++|...|++. .+.+ ...|..+...+...|++++|...|++.... ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556666777777777777776652 1112 234555556666666666666665554210 13
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhh
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHHGIR-PDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDM 470 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 470 (798)
.+|..+...|...|++++|+..+++....... ++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 34555555666666666666666555432100 010 0012234444555
Q ss_pred HHhcCC--------------------HHHHHHHHhhcCC-----C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003746 471 YMKLGC--------------------VDNALEVFHGTEE-----K----GVSSWNALIIGFAMNGLADKSLEMFSEMKKS 521 (798)
Q Consensus 471 ~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 521 (798)
|...|+ +++|.+.+++... . ...+|..+...|...|++++|+..|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 5555555543321 1 1236777778888888888888888877642
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 003746 522 GV-TPN----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM--- 589 (798)
Q Consensus 522 g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 589 (798)
.. .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 122 126777778888899999999999887653111111 567788889999999999999998876
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCChh
Q 003746 590 -PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQP------DHDGFHVLLSNIHASKGRWD 646 (798)
Q Consensus 590 -~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 646 (798)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 55788899999999999999999999987633 33456777888888877664
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=3.4e-11 Score=121.62 Aligned_cols=227 Identities=7% Similarity=-0.061 Sum_probs=184.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC--CCc----chHHHHHHH
Q 003746 428 TLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEE--KGV----SSWNALIIG 501 (798)
Q Consensus 428 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 501 (798)
.+......+...|++++|...+..+++... .+...+..+...|.+.|++++|.+.|++..+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556677889999999999999998753 3455778888899999999999999998765 222 248999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLK 580 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 580 (798)
|...|++++|++.|++..+.. +.+...+..+...+...|++++|...|+++++ ..| +...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999852 22446888999999999999999999998864 456 4677777873444456999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCChhH
Q 003746 581 EAEELIESM-PMSP-DVATWGALLGACKKHGD---HEMGERVGRKLVELQ---PDH-----DGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 581 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 647 (798)
+|.+.|+++ ...| +...|..+...+...|+ .++|...+++++++. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 3344 47788889999988888 889999999999865 542 2578889999999999999
Q ss_pred HHHHHHHHHhCC
Q 003746 648 VLEVRGMMVRRG 659 (798)
Q Consensus 648 a~~~~~~m~~~~ 659 (798)
|.+.+++..+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998744
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4.2e-12 Score=139.33 Aligned_cols=207 Identities=10% Similarity=0.009 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCH-HHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCV-DNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEM 518 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 518 (798)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444443332 234566777777788888888 888888877653 34668899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc--------CCHH
Q 003746 519 KKSGVTPNEITFVGVLGACRHM---------GLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA--------GMLK 580 (798)
Q Consensus 519 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~ 580 (798)
.+. .|+...+..+...+... |++++|.+.|+++++ +.| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 884 68877888888999999 999999999999987 356 478889999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 581 EAEELIESM-PMSP----DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 581 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+|.+.|++. ...| +...|..+..+|...|++++|++.++++++++|+++..+..++.++...|++++|.+.++++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 3345 78899999999999999999999999999999999999999999999999999999766443
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=2.4e-11 Score=122.91 Aligned_cols=217 Identities=14% Similarity=0.016 Sum_probs=179.3
Q ss_pred hcccchhHHHHHHHHHHHcCC---CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHH
Q 003746 437 THLVALDQGKWIHAYIRKNGL---KINSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADK 510 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 510 (798)
...+++++|...+..+++... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999988642 22567888899999999999999999998764 357789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 511 SLEMFSEMKKSGVTP-NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 511 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
|++.|++..+. .| +...+..+...+...|++++|..+|+++.+ +.|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999985 34 467888899999999999999999999976 4566555555666667889999999999766
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 590 --PMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD----HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 590 --~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
..+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2233444444 777777888899999999999987764 36788999999999999999999999998754
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=1.8e-11 Score=139.68 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCM 569 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 569 (798)
..+|+.|...|.+.|++++|++.|++.++ +.|+. ..+..+..++.+.|++++|.+.|+++++ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45788888888899999999999998888 46664 5788888999999999999999999876 5675 7888999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 570 VDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 570 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
..+|.+.|++++|++.|++. .+.| +..+|..+..++...|++++|++.++++++++|+++..+..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 4455 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003746 648 VLEVRGMMVR 657 (798)
Q Consensus 648 a~~~~~~m~~ 657 (798)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=5.3e-11 Score=128.34 Aligned_cols=267 Identities=12% Similarity=0.075 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcC---CCCh----hhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHH
Q 003746 330 NLQNALIHMYSSCGEITTAEKLFDAGH---NLDL----ISWNSMISGYLKCGSVEKARALFDAMIEK---------DVVS 393 (798)
Q Consensus 330 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~ 393 (798)
..+..+...+...|++++|.+.|++.. +.+. ..|..+...|...|++++|...|++.... ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344556667777777777777776521 2222 35666666677777777777766655321 2345
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcC-CCCcHHHHhHHHhhHH
Q 003746 394 WSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNG-LKINSILGTTLIDMYM 472 (798)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~ 472 (798)
|..+...|...|++++|+..|++.....- +.+ ......++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 66666666666777777766666543200 000 0111223444444555
Q ss_pred hcCC-----------------HHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 003746 473 KLGC-----------------VDNALEVFHGTEE-------K--GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TP 525 (798)
Q Consensus 473 ~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 525 (798)
..|+ +++|.+.+++..+ + ...+|..+...|...|++++|++.|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555544321 1 123677777778888888888888877765211 11
Q ss_pred C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC
Q 003746 526 N----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP----NSKHYGCMVDLLGRAGMLKEAEELIESM-PM---SP 593 (798)
Q Consensus 526 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p 593 (798)
+ ...+..+...+...|++++|..+++++.+...-.. ....+..+...|.+.|++++|.+.+++. .. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 12667777888889999999999888765321111 1467778889999999999999998876 11 11
Q ss_pred C----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 594 D----VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 594 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
+ ..++..+...|...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 447888999999999999999999999987664
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=7.3e-11 Score=122.89 Aligned_cols=265 Identities=10% Similarity=0.052 Sum_probs=156.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHH
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAG---HNLD----LISWNSMISGYLKCGSVEKARALFDAMIEK---------DVVSWS 395 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~ 395 (798)
+......+.+.|++++|...|++. .+.+ ...|..+...+...|++++|...|++.... ...+|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334455666666666666666542 1112 234555555556666666666555543211 123455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc
Q 003746 396 TMISGYAQHDQFSETLSLFMEMQHHGI-RPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL 474 (798)
Q Consensus 396 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 474 (798)
.+...|...|++++|+..+++...... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555555555556555555555433110 00100 0122344444555555
Q ss_pred CC--------------------HHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 003746 475 GC--------------------VDNALEVFHGTEE-----KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-T 524 (798)
Q Consensus 475 g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 524 (798)
|+ +++|.+.+++... .+ ..++..+...|...|++++|++.+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 11 23567777778888888888888877654210 1
Q ss_pred CC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-C---CC
Q 003746 525 PN----EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-P---MS 592 (798)
Q Consensus 525 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~ 592 (798)
++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 126677777888889999999988887653111111 556778888999999999999988876 1 11
Q ss_pred CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 593 PD----VATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 593 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 447888999999999999999999999988764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=9.3e-11 Score=110.58 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=141.9
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 535 (798)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999998764 35678999999999999999999999998875 344 446677778
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
.+...++++.+...+.+..+ ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88899999999999999876 345 4778889999999999999999999987 3444 6889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 003746 613 MGERVGRKLVELQPDHD 629 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~ 629 (798)
+|++.++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=1.2e-09 Score=112.38 Aligned_cols=218 Identities=9% Similarity=-0.000 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cccch-------hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHh
Q 003746 408 SETLSLFMEMQHHGIRPDEATLVSVISACT-------HLVAL-------DQGKWIHAYIRKNGLKINSILGTTLIDMYMK 473 (798)
Q Consensus 408 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 473 (798)
++|+..|++..... +-+...+......+. ..|++ ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223334444444333 23554 6677777777663123355577777777788
Q ss_pred cCCHHHHHHHHhhcCCC---Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCcHHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVS-SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACR-HMGLVDEGHR 548 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 548 (798)
.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888776542 233 68888888888888888888888887743 223334443333322 3688888888
Q ss_pred HHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 549 HFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P---MSP--DVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 549 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
+|+++++. .| +...|..+++.+.+.|++++|..+|++. . ++| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888763 34 4677788888888888888888888877 2 344 3567888888888888888888888888
Q ss_pred HhcCCCCcc
Q 003746 622 VELQPDHDG 630 (798)
Q Consensus 622 ~~~~p~~~~ 630 (798)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888887653
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.8e-11 Score=126.15 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc------C-C
Q 003746 392 VSWSTMISGYAQHDQFSETLSLFMEMQHH-------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN------G-L 457 (798)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~-~ 457 (798)
.+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44555666666666666666666655442 11112233333444444445555554444444332 1 1
Q ss_pred CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 003746 458 KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS----- 521 (798)
Q Consensus 458 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 521 (798)
+.....+..+...|...|++++|.+.|++..+. ....|..+...|...|++++|++.|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666665543311 1223444455555555555555555554432
Q ss_pred -CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003746 522 -GVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP 593 (798)
Q Consensus 522 -g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 593 (798)
+..|+. .++..+...+...|++++|.++++++.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 112221 133444444444455555555554443310 00010000000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....+..+...+...+.+.++...++++....|....++..++.+|...|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222233334445566666667777666777777777777777777777777777776654
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1.5e-08 Score=114.10 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=93.6
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhCC-CCchhHH
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLS---VFEGKLIHDHVLKAGF-DSDVYVN 169 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 169 (798)
.|..+|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+..+|+..+.... +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58889999999999999999999999999965 45555667777777778888 9999999999988652 4788899
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHccCC------CC-CcchHHHHHHHHHh---------CCCHHHHHHHHhhCCC
Q 003746 170 NTLINMYAVCGDL--------SAARKLFDESP------VL-DLVSWNSILAGYVN---------ADNVEEAKFIYNKMPE 225 (798)
Q Consensus 170 ~~li~~y~~~g~~--------~~A~~~f~~~~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 225 (798)
..-+....+.++. +..+++|+... .+ +...|...+.-... +++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888777666654 33447776521 22 23467766654332 2345666777776664
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=4.2e-10 Score=120.07 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM-----SPD-VAT 597 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~ 597 (798)
++..+...+...|++++|.+++++..+- .+..| ....+..+...|.+.|++++|.+.+++. .. .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445555555555555555554331 01112 2344555555555555555555555443 00 111 112
Q ss_pred HHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 598 WGALLGACKKHGD---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 598 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
+..+...+...|+ .++|+..+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444455555 44444444443 2233333455556666666666666666666554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=1.6e-10 Score=123.42 Aligned_cols=288 Identities=9% Similarity=0.014 Sum_probs=209.2
Q ss_pred HHhCCCHHHHHHHHHh------cC--CCChhhHHHHHHH--HHhcCCHHHHH-----------HHHHhcCCC--CHHH--
Q 003746 339 YSSCGEITTAEKLFDA------GH--NLDLISWNSMISG--YLKCGSVEKAR-----------ALFDAMIEK--DVVS-- 393 (798)
Q Consensus 339 y~~~g~~~~A~~~~~~------~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~--~~~~-- 393 (798)
+.+.+++++|..++++ .. .++...|-.++.. ....+.++.+. ..++.+... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 5689999999999875 22 2333444444432 12223344444 555554321 1111
Q ss_pred ----HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccchhHHHHHHHHHHHcC--C----C
Q 003746 394 ----WSTMISGYAQHDQFSETLSLFMEMQHH----GIRP-DEATLVSVISACTHLVALDQGKWIHAYIRKNG--L----K 458 (798)
Q Consensus 394 ----~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~ 458 (798)
|......+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.. . .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 122556678899999999999998763 1122 23567778888899999999999999887641 1 1
Q ss_pred CcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 003746 459 INSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTP 525 (798)
Q Consensus 459 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 525 (798)
....+++.+...|...|++++|.+.|++..+. + ..+|..+...|...|++++|++.|++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12457788889999999999999999876531 2 247889999999999999999999998772 3324
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--cC-CcchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHH
Q 003746 526 N-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRL--EP-NSKHYGCMVDLLGRAGM---LKEAEELIESMPMSPD-VAT 597 (798)
Q Consensus 526 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 597 (798)
+ ..++..+...+...|++++|..++++..+...- .| ....+..+...|...|+ +++|..++++.+..|+ ..+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4 347888889999999999999999998753211 12 13346778889999999 9999999999965544 447
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...|...|++++|...+++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999987543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=3.6e-10 Score=106.20 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHH
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLG 574 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 574 (798)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444455555555555555444321 123334555555555666666666666665542 1123455566666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 003746 575 RAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVR 652 (798)
Q Consensus 575 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 652 (798)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12356677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 003746 653 GMMVRR 658 (798)
Q Consensus 653 ~~m~~~ 658 (798)
+...+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877653
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=3.8e-10 Score=110.57 Aligned_cols=162 Identities=12% Similarity=0.029 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL 572 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 572 (798)
.|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++.++ ..|+ ...+..+...
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHH
Confidence 33344444444444444444444444432213333333344444444444444444444433 2232 3344444444
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHh
Q 003746 573 LGRAGMLKEAEELIESM-PMSP-DV-------ATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSNIHAS 641 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 641 (798)
|.+.|++++|.+.+++. ...| +. .+|..+...+...|++++|+..++++++++|+ ++..+..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 44444444444444443 1112 12 23444444444445555555555555555554 44444444444444
Q ss_pred cCC---------------------------hhHHHHHHHHHHhC
Q 003746 642 KGR---------------------------WDDVLEVRGMMVRR 658 (798)
Q Consensus 642 ~g~---------------------------~~~a~~~~~~m~~~ 658 (798)
.|+ +++|...+++..+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444 48888888888764
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=6.2e-10 Score=108.99 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIG 501 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 501 (798)
|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 456666677777778888888888888877765455566666777778888888888877776543 34567777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC---cchHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNE--------ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN---SKHYGCMV 570 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 570 (798)
|...|++++|++.|++..+. .|+. ..|..+...+...|++++|.+.|+++++ +.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 88888888888888877763 4442 2355566666777777888887777754 3454 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 571 DLLGRAGML--KEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 571 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
..|...|+. ++|..+. ..+...+..+. ....+.+++|+..+++++++.|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666555433 2222111 12233333222 23445679999999999999999988887777654
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=7.2e-09 Score=109.92 Aligned_cols=260 Identities=11% Similarity=-0.063 Sum_probs=171.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcccchhHHHHHHHHHHHc----CCC-CcHHHHhHHH
Q 003746 398 ISGYAQHDQFSETLSLFMEMQHHGIRPDEA----TLVSVISACTHLVALDQGKWIHAYIRKN----GLK-INSILGTTLI 468 (798)
Q Consensus 398 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 468 (798)
...+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+. +.. ........+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555667777777766665543111221 2333444555667777776666665542 110 0122345566
Q ss_pred hhHHhcCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEE-------K----GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVT--P--NEITFVGV 533 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 533 (798)
..|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777888888888888776542 1 1235666778888899999999999988763221 1 12456777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 003746 534 LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG-----CMVDLLGRAGMLKEAEELIESM-PMSPD-----VATWGALL 602 (798)
Q Consensus 534 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~ 602 (798)
...+...|++++|..++++......-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888899999999999998865321111111122 2335577999999999999988 22221 33567788
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDH------DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
..+...|++++|...++++++..+.. ...+..++.+|...|+.++|.+.++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999999998754321 23667789999999999999999988764
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=1.2e-09 Score=112.39 Aligned_cols=212 Identities=8% Similarity=-0.027 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHhHHHhhHH-------hcCCH-------HHHHHHHhhcCC---C-CcchHHHHHHHHHH
Q 003746 443 DQGKWIHAYIRKNGLKINSILGTTLIDMYM-------KLGCV-------DNALEVFHGTEE---K-GVSSWNALIIGFAM 504 (798)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 504 (798)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... + +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 446677777777765 35885 899999998665 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHH-hcCCHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEI--TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLG-RAGMLK 580 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 580 (798)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+++++ ..| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 466543 788888999999999999999999976 334 3455544444422 379999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 003746 581 EAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVEL---QPD-HDGFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 581 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
+|.++|++. ... .+...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 222 36889999999999999999999999999985 553 666888889999999999999999999
Q ss_pred HHhCCC
Q 003746 655 MVRRGV 660 (798)
Q Consensus 655 m~~~~~ 660 (798)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 887544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=7.1e-09 Score=110.23 Aligned_cols=228 Identities=12% Similarity=-0.007 Sum_probs=102.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcccchhHHHHHHHHHHHcC--C---C-CcHHHHh
Q 003746 397 MISGYAQHDQFSETLSLFMEMQHHGI-RPD----EATLVSVISACTHLVALDQGKWIHAYIRKNG--L---K-INSILGT 465 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 465 (798)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777654311 122 2234444445555555555555555444320 0 0 0122334
Q ss_pred HHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhc
Q 003746 466 TLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTPN-EITFVGVLGACRHM 540 (798)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~ 540 (798)
.+...|...|++++|.+. |++..+. +-.+. ..++..+...+...
T Consensus 187 ~lg~~y~~~~~~~~A~~~-------------------------------~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPH-------------------------------LEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 444444455555555444 4443321 10000 12344444455555
Q ss_pred CcHHHHHHHHHHHHHhC---CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC
Q 003746 541 GLVDEGHRHFNSMIQEH---RLEPNSKHYGCMVDLLGRAGMLKEAEELIESM----PM--SPD-VATWGALLGACKKHGD 610 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~ 610 (798)
|++++|.+++++.++-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555555544310 11111344445555555555555555555443 10 111 1223333333344444
Q ss_pred ---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 611 ---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 611 ---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.++|+..+++. ...|+....+..++.+|...|++++|.+.+++..
T Consensus 316 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444431 1222333344556666666666666666665554
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=7.2e-10 Score=121.49 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=156.8
Q ss_pred CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 003746 476 CVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLA-DKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHF 550 (798)
Q Consensus 476 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 550 (798)
.++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665543 3567899999999999999 9999999999984 555 568899999999999999999999
Q ss_pred HHHHHhCCCcCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 003746 551 NSMIQEHRLEPNSKHYGCMVDLLGRA---------GMLKEAEELIESM-PMSP-DVATWGALLGACKKH--------GDH 611 (798)
Q Consensus 551 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~ 611 (798)
+++++ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+..+|... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99975 568888899999999999 9999999999987 3344 688999999999998 999
Q ss_pred hHHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 612 EMGERVGRKLVELQP---DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987644
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2e-09 Score=101.01 Aligned_cols=168 Identities=14% Similarity=0.003 Sum_probs=143.0
Q ss_pred HHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003746 461 SILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGAC 537 (798)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 537 (798)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788899999999999999988754 46688899999999999999999999998852 33456788888999
Q ss_pred HhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHH
Q 003746 538 RHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 615 (798)
...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999774 2335778889999999999999999999987 22 346788999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 003746 616 RVGRKLVELQPDHDGF 631 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~ 631 (798)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999987654
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=1.6e-10 Score=118.92 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------C---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC-
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIE--------K---DVVSWSTMISGYAQHDQFSETLSLFMEMQHH------GIRP- 424 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p- 424 (798)
|..+...+...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +-.|
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 33444444455555555555544422 1 2345666667777777777777777766543 2122
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHc------CC-CCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-------
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKN------GL-KINSILGTTLIDMYMKLGCVDNALEVFHGTEEK------- 490 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 490 (798)
...++..+...+...|++++|...+..+.+. +. +.....+..+...|.+.|++++|.+.|++..+.
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2445566666677777777777777776654 22 234556778889999999999999999876532
Q ss_pred -C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH
Q 003746 491 -G---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY 566 (798)
Q Consensus 491 -~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 566 (798)
+ ..+|..+...|...|++++|++.|+++.+.. |+. .+..+- ....... .....+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~~~~~ 247 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MHAEER 247 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HHHHHH
Confidence 2 3478889999999999999999999998731 110 000000 0000000 011122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 567 GCMVDLLGRAGMLKEAEELIESMP-MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 567 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|.+.+++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 223334445566666666666662 233 4667889999999999999999999999988775
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=3.8e-09 Score=105.85 Aligned_cols=204 Identities=10% Similarity=-0.000 Sum_probs=134.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---G---VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV-TPN-EITFV 531 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 531 (798)
+...+-.+...+.+.|++++|...|+.+.+. + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666677777777777777776543 2 34566667777777777777777777776321 112 22455
Q ss_pred HHHHHHHh--------cCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 003746 532 GVLGACRH--------MGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALL 602 (798)
Q Consensus 532 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 602 (798)
.+..++.. .|++++|...|+++++. .|+ ......+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 67777777777777653 233 22222221111111100 11256778
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCccceE
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASK----------GRWDDVLEVRGMMVRRGVVKIPGCSMI 669 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i 669 (798)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------- 227 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-------- 227 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC--------
Confidence 889999999999999999999999854 4788899999877 9999999999998874432
Q ss_pred EECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 670 EANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
+|...++...+.++...+.+
T Consensus 228 ---------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 ---------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------CTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=5e-09 Score=111.43 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=141.9
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CCC-HHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSG--V---TPN-EITFV 531 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p~-~~t~~ 531 (798)
....+...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+.. . .+. ..++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566778888888888765431 2 3467888888999999999999998876521 1 111 33678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhC---CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCC-CHHHHHH
Q 003746 532 GVLGACRHMGLVDEGHRHFNSMIQEH---RLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P-----MSP-DVATWGA 600 (798)
Q Consensus 532 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~ 600 (798)
.+...|...|++++|.+.|++.++.. +-.+ ....+..+...|...|++++|.+.+++. . ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 88899999999999999999987632 2222 2567889999999999999999999886 2 334 3667889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCC---hhHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPD-----HDGFHVLLSNIHASKGR---WDDVLEVRGM 654 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 654 (798)
+...+...|++++|...+++++++.+. ....+..+..+|...|+ .++|..+++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999987443 23345567788888888 7777777665
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1.8e-09 Score=110.21 Aligned_cols=186 Identities=9% Similarity=-0.060 Sum_probs=123.4
Q ss_pred hHHhcCCHHHHHHHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV---TPN--EITFVGVLG 535 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~ 535 (798)
.|...|++++|.+.|++..+- + ..+|+.+...|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666665555543321 1 34667777777777777777777777654210 111 236777888
Q ss_pred HHHhc-CcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 003746 536 ACRHM-GLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DV-----ATWGAL 601 (798)
Q Consensus 536 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 601 (798)
.|... |++++|...|++.++-..-..+ ...+..+...|.+.|++++|.+.|++. ...| +. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999998763211111 356788899999999999999999887 2222 21 157778
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCChhHHHHHHHHH
Q 003746 602 LGACKKHGDHEMGERVGRKLVELQPDHDGF-----HVLLSNIHA--SKGRWDDVLEVRGMM 655 (798)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 655 (798)
..++...|++++|+..+++++++.|+.... +..+...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888999999999999999999999986543 334556664 457788888887654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=1.2e-09 Score=124.63 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=141.6
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 535 (798)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788889999999999999999988764 3467899999999999999999999999988 46664 58899999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
++...|++++|.+.|+++++ +.|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999986 5675 788999999999999999999999987 5556 5788999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003746 613 MGERVGRKLVELQP 626 (798)
Q Consensus 613 ~A~~~~~~~~~~~p 626 (798)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=2e-09 Score=108.76 Aligned_cols=221 Identities=10% Similarity=0.090 Sum_probs=156.0
Q ss_pred hcccchhHHHHHHHHHHHc-------CCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHH
Q 003746 437 THLVALDQGKWIHAYIRKN-------GLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNAL 498 (798)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 498 (798)
...|+++.|...++..++. ..+....++..+...|...|++++|...|++..+. ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777653 22335677888999999999999999998876521 24578889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCcC-Ccch
Q 003746 499 IIGFAMNGLADKSLEMFSEMKKS------GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEH-----RLEP-NSKH 565 (798)
Q Consensus 499 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 565 (798)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++++.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11233 3467788888999999999999999987631 1133 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHHcCChh------HHHHHHHHHHhcCCCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-P---------MSP-DVATWGALLGACKKHGDHE------MGERVGRKLVELQPDH 628 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~p~~ 628 (798)
+..+...|.+.|++++|.+.++++ . ..+ ....|..+.......+... .+...++......|+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999998876 1 122 2334444444444433332 2222233222334556
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 629 DGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 629 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788999999999999999999998765
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=5.5e-10 Score=101.13 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=101.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM 578 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 578 (798)
.+...|++++|++.+++... ..|+.. .+..+...|...|++++|.+.|+++++ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34445666666666666544 233322 455566777777777777777777765 345 36777778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 579 LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERV-GRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
+++|...|++. ...| +..+|..+...+...|+.++|.+. ++++++++|+++.++...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4445 577888999999999998776655 589999999999999988888888775
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=5.3e-07 Score=95.41 Aligned_cols=162 Identities=9% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCc--HHHH-h
Q 003746 393 SWSTMISGYAQHDQFSETLSLFMEMQHHGIR--P--DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKIN--SILG-T 465 (798)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~ 465 (798)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...++...+....++ .... .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4555666777777777777777776553211 1 123344455555666666666666666554311111 1111 1
Q ss_pred ---HHHhhHHhcCCHHHHHHHHhhcCCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHH-HH
Q 003746 466 ---TLIDMYMKLGCVDNALEVFHGTEEKGV-------SSWNALIIGFAMNGLADKSLEMFSEMKKS----GVTPNEI-TF 530 (798)
Q Consensus 466 ---~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~ 530 (798)
..+..+...|++++|...++.....+. ..+..+...+...|++++|...+++.... |..++.. .+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 233445667777777777766654321 13445556666666666666666655431 1111111 33
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Q 003746 531 VGVLGACRHMGLVDEGHRHFNSMI 554 (798)
Q Consensus 531 ~~ll~a~~~~g~~~~a~~~~~~~~ 554 (798)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444555555555555555543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=7.2e-09 Score=105.68 Aligned_cols=223 Identities=10% Similarity=-0.042 Sum_probs=136.5
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcccchhHHHHHH
Q 003746 375 SVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHH----GIRPD-EATLVSVISACTHLVALDQGKWIH 449 (798)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~ 449 (798)
++++|...|+.. ...|...|++++|+..|++.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467776666553 66677778888888777766442 11111 233444444444444444444444
Q ss_pred HHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 003746 450 AYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMN-GLADKSLEMFSEMKKSGVT-PN- 526 (798)
Q Consensus 450 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~- 526 (798)
...++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 443321 1112222221 23577788888886 8999998888887763110 01
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 003746 527 ---EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSK-----HYGCMVDLLGRAGMLKEAEELIESM-PMSPDVA- 596 (798)
Q Consensus 527 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 596 (798)
..++..+...+...|++++|..+|+++.+...-.+... .|..++.+|...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 23577888889999999999999999876321111111 4677888899999999999999987 4445322
Q ss_pred -----HHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 597 -----TWGALLGACK--KHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 597 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
.+..++.++. ..+++++|+..|+++.+++|........
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 3445566664 3467888888888888888866443333
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=1.3e-07 Score=94.40 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=105.1
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 480 ALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 480 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 23344456666677777777777777776554432233 3555666777777777777777777754
Q ss_pred hCCCcC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 003746 556 EHRLEP-----NSKHYGCMVDL--LGRAG--MLKEAEELIESM-PMSPDVATWGALLGACKKHGDHEMGERVGRKLVEL- 624 (798)
Q Consensus 556 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 624 (798)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..+++++...|++++|++.++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 23333334333 22223 777777777777 32344333334444667777777777777766665
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 625 ---------QPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 625 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+|+++.++..++.+....|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777666666666676 7777777776644
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=4.7e-08 Score=98.61 Aligned_cols=201 Identities=12% Similarity=0.085 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHH
Q 003746 391 VVSWSTMISGYAQHDQFSETLSLFMEMQHH------GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILG 464 (798)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (798)
..+|..+...|...|++++|+..|++.... +-.| ....++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~~~~~~ 88 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----------------------------------AVAATL 88 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----------------------------------HHHHHH
Confidence 345666667777777777777777666542 1111 122334
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEK-----------GVSSWNALIIGFAMNGLADKSLEMFSEMKKS------GVTPN- 526 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~- 526 (798)
..+...|...|++++|.+.|++.... ...+|..+...|...|++++|+..|++..+. +-.|+
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555555443311 1345666777777777777777777776653 11333
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCcCC-cchHHHHHHHHHhc------CCHHHHHHHHHhCC-CC
Q 003746 527 EITFVGVLGACRHMGLVDEGHRHFNSMIQEH------RLEPN-SKHYGCMVDLLGRA------GMLKEAEELIESMP-MS 592 (798)
Q Consensus 527 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~ 592 (798)
..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+... ..+.++...++... ..
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2367777888888899999999888886531 12232 33444444444332 33555555666553 22
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003746 593 P-DVATWGALLGACKKHGDHEMGERVGRKLVELQ 625 (798)
Q Consensus 593 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (798)
| ...+|..+...|...|++++|...+++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 35578889999999999999999999998753
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=7e-08 Score=94.03 Aligned_cols=180 Identities=10% Similarity=-0.018 Sum_probs=117.3
Q ss_pred HHHhHHHhhHHhcCCHHHHHHHHhhcCC--CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 003746 462 ILGTTLIDMYMKLGCVDNALEVFHGTEE--KG----VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI----TFV 531 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 531 (798)
..+..+...+.+.|++++|...|+.+.. ++ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667778888888888887664 22 135677777888888888888888887763 34321 333
Q ss_pred HHHHHHHh------------------cCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 003746 532 GVLGACRH------------------MGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMS 592 (798)
Q Consensus 532 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 592 (798)
.+..++.. .|+.++|...|+++++. .|+ ...+.....+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33334432 35566666666666542 233 2222111110 0000000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD---GFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123466778899999999999999999999986 46888999999999999999999999887654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=2.4e-08 Score=99.90 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---C---cchHH
Q 003746 425 DEATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK---G---VSSWN 496 (798)
Q Consensus 425 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~ 496 (798)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+. + ..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666677778889999999999999999874322 1567788999999999999999999987642 1 34677
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHH
Q 003746 497 ALIIGFAM--------NGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYG 567 (798)
Q Consensus 497 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 567 (798)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 99999999999999984 45532 11111 111111110 011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCcch-
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKH----------GDHEMGERVGRKLVELQPDHDGF- 631 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~- 631 (798)
.+...|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788888999999999998887 22232 45777788888765 88999999999999999998643
Q ss_pred --HHHHHHHHHhcCCh
Q 003746 632 --HVLLSNIHASKGRW 645 (798)
Q Consensus 632 --~~~l~~~~~~~g~~ 645 (798)
...+..++...|++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 33444444444433
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.2e-08 Score=86.96 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASK 642 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 642 (798)
.+..++..+...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3334444444444444444444443 1 1123455666666666666677777777776666666666666677777777
Q ss_pred CChhHHHHHHHHHHh
Q 003746 643 GRWDDVLEVRGMMVR 657 (798)
Q Consensus 643 g~~~~a~~~~~~m~~ 657 (798)
|++++|.+.++.+.+
T Consensus 117 ~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 117 GDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 777777777666654
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=3.1e-08 Score=113.63 Aligned_cols=167 Identities=12% Similarity=0.007 Sum_probs=121.0
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003746 472 MKLGCVDNALEVFHGTE-----------EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRH 539 (798)
Q Consensus 472 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 539 (798)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 55677777777777665 234567777777788888888888888887773 444 3466777777788
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.|++++|.+.|+++++ +.| +...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 345 36677778888888888888 7777776 3334 56678888888888888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 617 VGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
.++++++++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888877766555
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=6.9e-08 Score=84.73 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888888899999999999888753 234567777888888899999999999998763 123466788889999
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 574 GRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999887 22 3467888999999999999999999999999988863
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=3.6e-08 Score=100.07 Aligned_cols=175 Identities=7% Similarity=-0.009 Sum_probs=136.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 477 VDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
.+.....+......+...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555554445556777788888999999999999998884 5654 4777788889999999999999998854
Q ss_pred hCCCcCCcchHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--cc
Q 003746 556 EHRLEPNSKHYGC-MVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH--DG 630 (798)
Q Consensus 556 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~ 630 (798)
..|+...... ....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4565433322 233466778888888888776 3344 68899999999999999999999999999999988 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=1.9e-08 Score=90.55 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=91.0
Q ss_pred CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 558 RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 558 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45664 667788888999999999999999887 3445 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 635 LSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=7.1e-09 Score=93.74 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 003746 535 GACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDH 611 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 611 (798)
..+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 445567899999999988743 4554 566778999999999999999999987 4455 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 003746 612 EMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEV-RGMMVRR 658 (798)
Q Consensus 612 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 658 (798)
++|+..++++++++|+++..+..++.+|...|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987765 4776653
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=3e-07 Score=88.51 Aligned_cols=172 Identities=9% Similarity=-0.051 Sum_probs=133.0
Q ss_pred HHHHHhhcCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHH
Q 003746 480 ALEVFHGTEE-KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMG----LVDEGHRHFNSMI 554 (798)
Q Consensus 480 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 554 (798)
|.+.|++..+ .+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 355677777777777888888888888887765 45566666666666 6 8899999998885
Q ss_pred HhCCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 003746 555 QEHRLEPNSKHYGCMVDLLGR----AGMLKEAEELIESM-PMSPD---VATWGALLGACKK----HGDHEMGERVGRKLV 622 (798)
Q Consensus 555 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 622 (798)
+. -+...+..|..+|.. .+++++|.++|++. ...|+ ...+..|...|.. .++.++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 246677788888877 88999999999987 33343 7888999999988 789999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 003746 623 ELQPDHDGFHVLLSNIHASK-G-----RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 623 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 660 (798)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66777899999999764 3 89999999999988764
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=3.5e-08 Score=91.92 Aligned_cols=155 Identities=7% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHH-HHh
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDL-LGR 575 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 575 (798)
+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++++.+ ..|+...+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHh
Confidence 33444445555555555554443 12322 2344444455555555555555554432 22222111111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHH
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH--DGFHVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 651 (798)
.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11222345555554 2334 57788888888899999999999999999988875 45788888999999999999888
Q ss_pred HHHHHh
Q 003746 652 RGMMVR 657 (798)
Q Consensus 652 ~~~m~~ 657 (798)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876643
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=3.8e-06 Score=91.79 Aligned_cols=350 Identities=10% Similarity=-0.034 Sum_probs=165.6
Q ss_pred CCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCCCCc-hhHHHHHHHHhc----cCchHH
Q 003746 242 GNVAEACRLFKEMPK--KDLVSWSALISCYEQNEM-YEEALVLFMNMIDH-RVMVDE-VVVVSVLSACAN----LTVVKA 312 (798)
Q Consensus 242 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~a~~~----~~~~~~ 312 (798)
|+++.+..+|++... |++..|...+.-..+.+. .+....+|+..+.. |..|+. ..|...+.-+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888887654 677788877776666653 35566677766543 544433 344444443322 345667
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC----C
Q 003746 313 GTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMI----E 388 (798)
Q Consensus 313 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 388 (798)
++.++..++......-..++......-.. .....+.++..+ ..+.+..|+.+++.+. .
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~-----------------~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD-----------------TLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHhh
Confidence 77777777763221111222222221111 111111111111 1112233333333221 1
Q ss_pred CCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcH
Q 003746 389 KDVVSWSTMISGYAQHDQ-------FSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINS 461 (798)
Q Consensus 389 ~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 461 (798)
.+...|...+.--..++. .+.+..+|+++.... +-+...+...+.-+...|+++.|..+++..++. +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 233456555544322211 234556777766542 333455555555566677777777777777776 3333
Q ss_pred HHHhHHHhhHHhcCCHHHH-HHHHhhcC------------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003746 462 ILGTTLIDMYMKLGCVDNA-LEVFHGTE------------EKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEI 528 (798)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 528 (798)
..+.. |+...+.++. ..+.+... ......|-..+..+.+++..+.|..+|++. .. ..++..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 32221 2221111111 01111100 001124555555555556666666666666 21 112222
Q ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003746 529 TFVGVLGACR-HMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK 607 (798)
Q Consensus 529 t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 607 (798)
.|......-. ..++.+.|..+|+..++.++- +...+...++...+.|+.+.|..+|+++. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3322111111 122466667777666664322 23334455666666666666666666662 234555555555555
Q ss_pred cCChhHHHHHHHHHH
Q 003746 608 HGDHEMGERVGRKLV 622 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~ 622 (798)
+|+.+.+..++++.+
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 565555555555554
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=2.6e-08 Score=89.71 Aligned_cols=101 Identities=7% Similarity=-0.005 Sum_probs=88.3
Q ss_pred CcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455 3666777888899999999999999887 3334 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.+|...|++++|.+.+++..+..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999887643
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.74 E-value=5.4e-07 Score=90.01 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK-----GVSSWNALIIGFAMNGLADKSLEMFSEMK 519 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 519 (798)
+...++..++.+ .++......+...|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 344455567888899999999999999887433 34577788899999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003746 520 KSGVTP-----NEITFVGVLGAC--RHMG--LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM- 589 (798)
Q Consensus 520 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 589 (798)
+ ..| +..+...+..++ ...| +..+|..+|+++.++ .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 467 356666666663 3334 899999999998654 344233344455889999999999998765
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchH
Q 003746 590 PM----------SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 590 ~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
.. .| |+.+.-.++......|+ .|.+.++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 56677566666666776 88999999999999997543
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=1.1e-07 Score=91.22 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=93.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG 574 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 574 (798)
.+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+++++ +.|+ ...+..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3788888999999999999998884 554 45778888888899999999999999876 4564 777888888887
Q ss_pred hcCC--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003746 575 RAGM--LKEAEELIESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDH 628 (798)
Q Consensus 575 ~~g~--~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 628 (798)
..|+ .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 345556666553 333 3345556667777889999999999999999974
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=1e-07 Score=91.60 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=116.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCcHHHHHHHHHHHHHhCCCc
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKKSGVTPNEI-TFVG----------------VLGACRHMGLVDEGHRHFNSMIQEHRLE 560 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 560 (798)
....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++.++ +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---KA 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HC
Confidence 34456677777777777777776 345433 4444 77889999999999999999987 45
Q ss_pred C-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 561 P-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD--HEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 561 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
| +...+..+..+|...|++++|.+.|++. ...| +..+|..+...+...|+ .+.+...++++....|.. ..+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHH
Confidence 6 4788999999999999999999999988 4445 57889999988876654 445566666665443332 245667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
+.++...|++++|...+++..+..
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888999999999999987643
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=1e-07 Score=107.33 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 003746 474 LGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRH 549 (798)
Q Consensus 474 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 549 (798)
.|++++|.+.|++..+. +...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987753 4678999999999999999999999999984 555 55788888999999999999999
Q ss_pred HHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHHh
Q 003746 550 FNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKH---GDHEMGERVGRKLVE 623 (798)
Q Consensus 550 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 623 (798)
+++.++. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999873 45 4788999999999999999999999987 3344 678899999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 003746 624 LQPDHDGFHVLLS 636 (798)
Q Consensus 624 ~~p~~~~~~~~l~ 636 (798)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=6.8e-08 Score=84.14 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+......+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 445555566666666666666666654 234 3556666666666666666666666655 2233 456667777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSN 637 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 637 (798)
...|++++|++.++++++++|+++.++..|++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777777777777666655554
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=4.8e-08 Score=112.05 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=133.6
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHH
Q 003746 503 AMNGLADKSLEMFSEMK--------KSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~--------~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 572 (798)
...|++++|++.|++.. + ..|+ ...+..+..++...|++++|...|+++++ ..| +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHH
Confidence 77899999999999998 4 3454 45788888999999999999999999987 356 47889999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 573 LGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
|.+.|++++|.+.|++. ...| +...|..+..++...|++++ +..|+++++++|+++..+..++.+|...|++++|.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999987 4445 57789999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 003746 651 VRGMMVRRG 659 (798)
Q Consensus 651 ~~~~m~~~~ 659 (798)
.+++..+..
T Consensus 556 ~~~~al~l~ 564 (681)
T 2pzi_A 556 TLDEVPPTS 564 (681)
T ss_dssp HHHTSCTTS
T ss_pred HHHhhcccC
Confidence 999776543
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=3.8e-07 Score=93.58 Aligned_cols=220 Identities=11% Similarity=0.027 Sum_probs=155.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-ccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHH
Q 003746 403 QHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTH-LVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNAL 481 (798)
Q Consensus 403 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 481 (798)
..|++++|.+++++..+.. +.. +.. .++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999998876531 111 111 46677776666554 45677788888888
Q ss_pred HHHhhcCCC-----C----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCcHHHHH
Q 003746 482 EVFHGTEEK-----G----VSSWNALIIGFAMNGLADKSLEMFSEMKKSG---VTPN--EITFVGVLGACRHMGLVDEGH 547 (798)
Q Consensus 482 ~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 547 (798)
..|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888765431 1 3478888999999999999999999876521 1222 2467778888888 9999999
Q ss_pred HHHHHHHHhCCCc---C-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChhHHH
Q 003746 548 RHFNSMIQEHRLE---P-NSKHYGCMVDLLGRAGMLKEAEELIESM-PM---SPD----VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 548 ~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~ 615 (798)
.+|++.++-+.-. + ....+..+...|.+.|++++|.+.|++. .. .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987632111 1 1467888999999999999999999887 11 122 236677777888889999999
Q ss_pred HHHHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 003746 616 RVGRKLVELQPDHDGF-----HVLLSNIHASKGRWDDVLEV 651 (798)
Q Consensus 616 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 651 (798)
..+++++ +.|+.... ...++.+| ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99976543 33445555 56776666553
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=4.8e-07 Score=92.09 Aligned_cols=164 Identities=9% Similarity=-0.076 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 564 (798)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677788899999999999888775322111 12334455667888999999999988753211112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------Cc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM----PMSPD-----VATWGALLGACKKHGDHEMGERVGRKLVELQPD------HD 629 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 629 (798)
.|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|+..+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998876 11222 258899999999999999999999999876432 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDV-LEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 657 (798)
.++..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776653
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=8.4e-08 Score=83.56 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=91.3
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.|+ ...+...+..|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5665 567888999999999999999999987 4444 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998774
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=2.3e-07 Score=82.84 Aligned_cols=100 Identities=12% Similarity=0.010 Sum_probs=85.7
Q ss_pred CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 559 LEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 559 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4443 555666778888899999999988887 3334 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003746 636 SNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 636 ~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=2.2e-06 Score=87.15 Aligned_cols=161 Identities=9% Similarity=-0.087 Sum_probs=120.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHH
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGV-TPNEI----TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYG 567 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 567 (798)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+++.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877421 22221 2234556667778999999999998763222223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchH
Q 003746 568 CMVDLLGRAGMLKEAEELIESMP-------MS-PD-VATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFH 632 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 632 (798)
.+...|...|++++|.+.++++- .. +. ..++..+...|...|++++|+..+++++++.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 11 22 3478899999999999999999999999865433 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 003746 633 VLLSNIHASKGR-WDDVLEVRGMMVR 657 (798)
Q Consensus 633 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 657 (798)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988753
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=5.6e-07 Score=86.53 Aligned_cols=125 Identities=8% Similarity=-0.042 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKK 607 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 607 (798)
+..+...+...|++++|...|+++ +.|+...+..+...|.+.|++++|.+.+++. ... .+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445556667777777776654 3456666777777777777777777777665 222 356778888888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 608 HGDHEMGERVGRKLVELQPDHD----------------GFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888888776 788888999999999999999988887654
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=3.5e-07 Score=102.94 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=64.0
Q ss_pred cchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHH
Q 003746 440 VALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFS 516 (798)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 516 (798)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555554432 123444555555555555555555555544332 23445555555555555555555555
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 003746 517 EMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA---GMLKEAEELIESM 589 (798)
Q Consensus 517 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 589 (798)
+..+. .|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...|... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55542 232 234455555555555555555555555442 23 244455555555555 5555555555544
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=7e-07 Score=86.84 Aligned_cols=184 Identities=11% Similarity=-0.023 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCC--cHHHHhHHHhhHHhcCCHHHHHHHHhhcCCC--C-cc---hHHH
Q 003746 426 EATLVSVISACTHLVALDQGKWIHAYIRKNGLKI--NSILGTTLIDMYMKLGCVDNALEVFHGTEEK--G-VS---SWNA 497 (798)
Q Consensus 426 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~ 497 (798)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+. + .. +|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677889999999999999999874332 2456777899999999999999999987642 2 21 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Q 003746 498 LIIGFAM------------------NGLADKSLEMFSEMKKSGVTPNEIT-FVGVLGACRHMGLVDEGHRHFNSMIQEHR 558 (798)
Q Consensus 498 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 558 (798)
+..++.. .|+.++|+..|+++.+. .|+... ..... +.+ .+...+ .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~-~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRL-A--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHH-H---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHH-H---
Confidence 5555554 57899999999999984 566532 11111 100 011111 0
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 559 LEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 559 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|++.++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11235678899999999999999987 22343 257888999999999999999999999999998754
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=4.9e-07 Score=91.60 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=112.3
Q ss_pred CCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003746 525 PNE-ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPDVATWGAL 601 (798)
Q Consensus 525 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 601 (798)
|+. ..+..+...+...|++++|...|+++++ ..| +...+..+..+|.+.|++++|.+.++++ ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 4677778888999999999999999987 456 4778889999999999999999999998 445765544333
Q ss_pred H-HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 602 L-GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 602 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
. ..+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.+..+.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3 346678889999999999999999999999999999999999999999999998754
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=7.3e-07 Score=82.85 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=117.5
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGA-CRHM 540 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~ 540 (798)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3456678889999999999998774 35678899999999999999999999988764 4443322221111 1222
Q ss_pred CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChhHHH
Q 003746 541 GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD---VATWGALLGACKKHGDHEMGE 615 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~ 615 (798)
+...+|...+++.++ ..|+ ...+..+...|...|++++|.+.++++ ...|+ ...|..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233357888888876 4564 788889999999999999999999987 44554 568999999999999999999
Q ss_pred HHHHHHHh
Q 003746 616 RVGRKLVE 623 (798)
Q Consensus 616 ~~~~~~~~ 623 (798)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=1.3e-06 Score=83.92 Aligned_cols=144 Identities=6% Similarity=-0.039 Sum_probs=81.1
Q ss_pred hHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH
Q 003746 465 TTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD 544 (798)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 544 (798)
..+...|.+.|++++|.+.|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3344455555666666666655554455555555555555555555555555555431 112334445555555555555
Q ss_pred HHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003746 545 EGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
+|.+.|+++.+. .|+..... +...| +...| ...+|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555432 12100000 00000 01223 246788899999999999999999999999
Q ss_pred cCCCC
Q 003746 624 LQPDH 628 (798)
Q Consensus 624 ~~p~~ 628 (798)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99986
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=7.4e-07 Score=82.85 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=84.4
Q ss_pred hcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--h
Q 003746 539 HMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA-CKKHGDH--E 612 (798)
Q Consensus 539 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 612 (798)
..|++++|...+++.++. .| +...+..+...|...|++++|.+.|++. ...| +...|..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345666666666666553 23 3566667777777777777777777665 2223 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
+|+..++++++..|+++..+..++.+|...|++++|.+.++.+.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888888888888876543
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=9.9e-06 Score=81.75 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=101.9
Q ss_pred CHHHHHHHHhhcCC---CCcchHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH-
Q 003746 476 CVDNALEVFHGTEE---KGVSSWNALIIGF----AMN---GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD- 544 (798)
Q Consensus 476 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 544 (798)
+++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|...|..-.....+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 45555555554442 2233444443333 333 55666666666666532 223345555555555555555
Q ss_pred -HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH-
Q 003746 545 -EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM------LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEM- 613 (798)
Q Consensus 545 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~- 613 (798)
+++++++++++. .| |...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+...
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666552 23 34445444445555554 66677766655 2233 67777777777766666433
Q ss_pred HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 614 GERVGRKLVELQ---PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 614 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....++++++++ |.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 445666666655 66666777777777777777777777777664
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=2.9e-07 Score=92.99 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=132.4
Q ss_pred cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003746 460 NSILGTTLIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLG 535 (798)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 535 (798)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344566677778888888888888887653 35667888888899999999999999988874 554 457777888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMG 614 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 614 (798)
++...|++++|...|+++.+. .|+ ...+...+....+.++...... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 899999999999999888653 342 2222223333322222222222 222333344444444433 2 36899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 003746 615 ERVGRKLVELQPDHDGFHVLLSNIHASK-GRWDDVLEVRGMMVRR 658 (798)
Q Consensus 615 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 658 (798)
++.++++++++|++......+..++... +++++|.++|..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999877777777777776 7899999999888653
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=1.4e-06 Score=75.03 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGAC 605 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 605 (798)
..+..+...+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455666666777777777777777776531 224566677777777888888888877776 22 34677888899999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888776544
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=3.3e-07 Score=94.02 Aligned_cols=197 Identities=7% Similarity=-0.047 Sum_probs=150.1
Q ss_pred cccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 438 HLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 438 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
..|++++|.++++...+.... . .+...|+++.|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899988888764221 0 12225889999988765 36778899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 518 MKKS----GVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEH---RLEP-NSKHYGCMVDLLGRAGMLKEAEELIES 588 (798)
Q Consensus 518 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 588 (798)
..+. |-.+. ..+|..+...|...|++++|...|++.++-+ |-.+ ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 2378888889999999999999999986532 1111 14678889999988 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHH
Q 003746 589 M-PM---SPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHD------GFHVLLSNIHASKGRWDDVLEVRGM 654 (798)
Q Consensus 589 ~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 654 (798)
. .+ ..+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 45788999999999999999999999999876553 2566778888899999999999998
Q ss_pred HH
Q 003746 655 MV 656 (798)
Q Consensus 655 m~ 656 (798)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=1.4e-06 Score=79.61 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++.++. .| +...+..+...|...|++++|.+.+++. ...| +..+|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555556666777777777777777653 33 4666777777888888888888887776 2233 577888999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHH--HHHHHhcCChhHHHHHHHHHHh
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLL--SNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...|++++|...+++++++.|++...+..+ +..+...|++++|.+.+....+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877544 4448888999999999887653
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=3.1e-07 Score=82.53 Aligned_cols=104 Identities=8% Similarity=0.019 Sum_probs=82.1
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 523 VTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 523 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
+.|+.. .+..+...+.+.|++++|...|+++++ +.| +...|..+..+|.+.|++++|.+.|+++ .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 455544 566667777888888888888888876 455 4777888888888888888888888877 3344 56788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998764
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=8.6e-07 Score=92.04 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 367788888888999999999888887 3334 68889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 003746 641 SKGRWDDV-LEVRGMMV 656 (798)
Q Consensus 641 ~~g~~~~a-~~~~~~m~ 656 (798)
..|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=1.6e-06 Score=75.41 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 604 (798)
..+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34555666667777777777777777653 23 4566777777777888888888877766 2233 57788888899
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
+...|++++|...+++++++.|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988899999888888775
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.45 E-value=1.3e-06 Score=76.39 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|+++++ ..| +...+..+...|...|++++|.+.+++. ... .+...|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455555566666666666666666643 233 3555666666666777777777766665 222 3567888888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGR 644 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 644 (798)
...|++++|++.+++++++.|++...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 899999999999999999999888888888888876653
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.45 E-value=6.8e-05 Score=75.58 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccc--chhHHHHHHHHHHHcCCCCcHHHHhHHHhhH----Hhc---
Q 003746 405 DQFSETLSLFMEMQHHGIRPDEAT-LVSVISACTHLV--ALDQGKWIHAYIRKNGLKINSILGTTLIDMY----MKL--- 474 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 474 (798)
...++|++++.++... .|+..| ++.--.++...+ .++++...++.++....+ +..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3345666666666553 343332 333334444455 666666666666655432 333333332223 333
Q ss_pred CCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc------H
Q 003746 475 GCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLAD--KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL------V 543 (798)
Q Consensus 475 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 543 (798)
+++++++++++.+.+ ++..+|+--...+.+.|.++ ++++.++++.+... -|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 678889988888775 45668888888888889888 99999999998643 255567666666666666 8
Q ss_pred HHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChhHHHH
Q 003746 544 DEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKE-AEELIESM-PM----SPDVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 544 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
+++++++++++. ..| |...|+.+..++.+.|+..+ +.++.++. .. ..+...+..++..+.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999987 355 58888888899999888554 55677765 22 2478899999999999999999999
Q ss_pred HHHHHHh-cCCCCcchHHHHH
Q 003746 617 VGRKLVE-LQPDHDGFHVLLS 636 (798)
Q Consensus 617 ~~~~~~~-~~p~~~~~~~~l~ 636 (798)
+++.+.+ .+|....++...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 9999996 8998877776554
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=1.8e-05 Score=80.30 Aligned_cols=158 Identities=9% Similarity=-0.094 Sum_probs=121.6
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCCCCc--------c-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEEKGV--------S-SWNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNE----ITFVG 532 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 532 (798)
.+..+.+.|++++|...++...+... . .+..+...+...|++++|+..|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988664321 1 2334667777788999999999999884322 232 26888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC----CCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEH----RLEPN-SKHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD-VATWG 599 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 599 (798)
+..+|...|++++|..+|+++++.. +..+. ...|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999987522 22222 457889999999999999999998876 11222 67899
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHhc
Q 003746 600 ALLGACKKHGD-HEMGERVGRKLVEL 624 (798)
Q Consensus 600 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 624 (798)
.+..++...|+ +++|.+.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999864
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=1.5e-06 Score=73.23 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=85.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CcchHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPD--HDGFHVLLSN 637 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 637 (798)
+...+..+...+.+.|++++|...+++. ... .+..+|..+...+...|++++|+..++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3567777888888999999999988876 223 36778899999999999999999999999999999 9899999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCC
Q 003746 638 IHASK-GRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 638 ~~~~~-g~~~~a~~~~~~m~~~~~ 660 (798)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=1.7e-06 Score=94.41 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=91.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 003746 536 ACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHE 612 (798)
Q Consensus 536 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 612 (798)
.+...|++++|.+.|+++++. .| +...|..+...|.+.|++++|.+.+++. ...| +..+|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445677888888888877663 45 3677788888888888888888888776 3444 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 003746 613 MGERVGRKLVELQPDHDGFHVLLSNI--HASKGRWDDVLEVRGM 654 (798)
Q Consensus 613 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 654 (798)
+|++.+++++++.|++...+..++.+ +...|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8888999999999874
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.8e-06 Score=75.01 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44566677778888888888888776 3334 678888899999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 003746 642 KGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 642 ~g~~~~a~~~~~~m~~~ 658 (798)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=9.2e-07 Score=76.22 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=84.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHAS 641 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 641 (798)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999887 3345 688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 003746 642 KGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 642 ~g~~~~a~~~~~~m~~~~ 659 (798)
.|++++|.+.+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=7.3e-06 Score=83.26 Aligned_cols=162 Identities=8% Similarity=-0.086 Sum_probs=120.5
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHhhcCCCC---------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 003746 463 LGTTLIDMYMKLGCVDNALEVFHGTEEKG---------VSSWNALIIGFAMNGLADKSLEMFSEMKKSGV---TPN--EI 528 (798)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 528 (798)
.+...+..+...|++++|.+.++...+.. ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888999999998887544321 12344566667888999999999999876321 122 33
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-----SKHYGCMVDLLGRAGMLKEAEELIESM-P------MSP-DV 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~ 595 (798)
++..+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732212232 258889999999999999999999876 1 111 16
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 003746 596 ATWGALLGACKKHGDHEMG-ERVGRKLVEL 624 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 624 (798)
.+|..+...|...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6889999999999999999 7778888753
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=4.9e-06 Score=78.97 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----H
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-P---MSP-D----V 595 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 595 (798)
.+..+...+...|++++|...+++.++. .+..| ....+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444445555555555555555554431 11122 2345556666666666666666666554 1 011 2 3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQP--DHD----GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++..+...+...|++++|...+++++++.+ .++ ..+..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3566777777788888888888888776422 121 2346788888888888888888877654
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.38 E-value=1.6e-05 Score=76.25 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----chhHHHHHHHHHHHcCCCCcHHHHh
Q 003746 390 DVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLV----ALDQGKWIHAYIRKNGLKINSILGT 465 (798)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (798)
++.++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666666666666667777777776666554 33444444444444 4 5666666666665544 344555
Q ss_pred HHHhhHHh----cCCHHHHHHHHhhcCCCC-----cchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003746 466 TLIDMYMK----LGCVDNALEVFHGTEEKG-----VSSWNALIIGFAM----NGLADKSLEMFSEMKKSGVTPNEITFVG 532 (798)
Q Consensus 466 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 532 (798)
.|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55566655 667777777777666544 3566666666666 66677777777776664 223334455
Q ss_pred HHHHHHhc-C-----cHHHHHHHHHHHHH
Q 003746 533 VLGACRHM-G-----LVDEGHRHFNSMIQ 555 (798)
Q Consensus 533 ll~a~~~~-g-----~~~~a~~~~~~~~~ 555 (798)
+...|... | +.++|..+|++..+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55555432 2 66777777766654
No 140
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.38 E-value=4.5e-05 Score=83.26 Aligned_cols=336 Identities=7% Similarity=-0.080 Sum_probs=176.9
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhCCC-HHHH
Q 003746 271 QNE-MYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQNALIHMYSSCGE-ITTA 348 (798)
Q Consensus 271 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 348 (798)
+.| +++.|..+|+.+... -|. ++.+.+..+++..+.. .|++.+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366777777776551 122 6677777777777663 3566677776666665553 2334
Q ss_pred HHHHHh-----c-CCCChhhHHHHHHHHH----hcCCHHHHHHHHHhcCCC---CH-HHHHHHHHHHHhCCChHHHHHHH
Q 003746 349 EKLFDA-----G-HNLDLISWNSMISGYL----KCGSVEKARALFDAMIEK---DV-VSWSTMISGYAQHDQFSETLSLF 414 (798)
Q Consensus 349 ~~~~~~-----~-~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~---~~-~~~~~li~~~~~~g~~~~A~~l~ 414 (798)
..+|+. + ...+...|...+.-+. ..++++.++++|++...- +. ..|...... .+......+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~- 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKI- 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHH-
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHH-
Confidence 445543 1 1234455666555433 234566666666665321 11 112211111 000111111111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc--CC-----HHHHHHHHhhc
Q 003746 415 MEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL--GC-----VDNALEVFHGT 487 (798)
Q Consensus 415 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~ 487 (798)
+... .+.+..|+.++..+.+.--..+...|...++.-... |- .+.+..+|+++
T Consensus 146 ------------------~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 146 ------------------VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp ------------------HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 122333444444333210001233444444432211 10 23455666665
Q ss_pred CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC------
Q 003746 488 EE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHR------ 558 (798)
Q Consensus 488 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 558 (798)
.. .....|-..+.-+.+.|+.++|..+|++.... |+...+.. +|......++ .++.+.+.+-
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC------
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccch
Confidence 53 24567888888888899999999999999886 55433222 1221111111 1333322210
Q ss_pred --CcC---CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCcch
Q 003746 559 --LEP---NSKHYGCMVDLLGRAGMLKEAEELIESMPMS-PDVATWGALLGACKK-HGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 559 --~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
..+ ....|...++.+.+.|.++.|.++|+++..+ .+..+|-..+..-.. .++.+.|..+++.+++..|+++..
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 001 1345667777777888899999999988322 234445332222222 336999999999999988988877
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 003746 632 HVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 632 ~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
+...++...+.|+.+.|+.+++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777788889999999999876
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=1.3e-06 Score=78.31 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=86.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003746 523 VTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATW 598 (798)
Q Consensus 523 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 598 (798)
+.|+.. .+..+...+...|++++|...|+++++ ..| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 345443 566667778888888888888888876 345 5777788888888999999999888887 3334 56788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 599 GALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
..+..++...|++++|+..+++++++.|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 8999999999999999999999999999987764433
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=4.8e-06 Score=76.13 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655 2223 56666677777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003746 641 SKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~ 658 (798)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766553
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=1.5e-06 Score=75.61 Aligned_cols=94 Identities=6% Similarity=-0.017 Sum_probs=79.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc-------hHHH
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG-------FHVL 634 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 634 (798)
..+..++..|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|++.+++++++.|++.. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566788888889999998888876 3445 5788999999999999999999999999999887654 5677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003746 635 LSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999988765
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=3.7e-06 Score=74.06 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777888888888888887776 2233 5778888999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...|++++|.+.++...+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999998887643
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=4.9e-06 Score=77.19 Aligned_cols=129 Identities=9% Similarity=0.107 Sum_probs=100.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHH-HHhcCCH-
Q 003746 503 AMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL-LGRAGML- 579 (798)
Q Consensus 503 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 579 (798)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++++. .| +...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35677888888888887742 234567888888888999999999999998763 44 46777788888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 580 -KEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 580 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999887 3334 578899999999999999999999999999999987655443
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=3.8e-06 Score=79.73 Aligned_cols=152 Identities=14% Similarity=0.032 Sum_probs=102.6
Q ss_pred hcCCHHHHHH---HHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCcHH
Q 003746 473 KLGCVDNALE---VFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVTPN-EITFVGVLGACRHMGLVD 544 (798)
Q Consensus 473 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 544 (798)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++..+ .+..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 54443333355677777778888888888888877665 222222 235666777888888888
Q ss_pred HHHHHHHHHHHhCCCcC-----CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 003746 545 EGHRHFNSMIQEHRLEP-----NSKHYGCMVDLLGRAGMLKEAEELIESM----PMSPD----VATWGALLGACKKHGDH 611 (798)
Q Consensus 545 ~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 611 (798)
+|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888888765421122 1345777888888899999888888765 11122 23467788888999999
Q ss_pred hHHHHHHHHHHhc
Q 003746 612 EMGERVGRKLVEL 624 (798)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (798)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988865
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=1.1e-05 Score=68.33 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555666666666666666542 23 3455556666666666666666666655 2223 466677777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
...|++++|...++++++..|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777778888888887777777777666665544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=1.6e-06 Score=85.45 Aligned_cols=135 Identities=11% Similarity=-0.029 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC--cchHHHHHHHH
Q 003746 496 NALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN--SKHYGCMVDLL 573 (798)
Q Consensus 496 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 573 (798)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677777888888877777653 355544444455677888888888888755321 1 111 23566778888
Q ss_pred HhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 574 GRAGMLKEAEELIESM---PMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.+.|++++|++.|++. +..|. ...+..+..++.+.|+.++|...|++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888888877 22143 346777888889999999999999999999998 6555554
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=5.1e-06 Score=70.53 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677888999999999999999987 3334 78889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003746 641 SKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~~ 659 (798)
..|++++|.+.++...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887643
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=3.7e-06 Score=74.79 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=85.8
Q ss_pred CCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 003746 524 TPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWG 599 (798)
Q Consensus 524 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 599 (798)
.|+.. .+..+...+...|++++|...|+++++ ..| +...|..+..+|.+.|++++|...|++. ...| +...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 44333 455566677788888888888888876 345 4677778888888888888888888877 3334 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003746 600 ALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNI 638 (798)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 638 (798)
.+..++...|++++|+..+++++++.|+++........+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 899999999999999999999999999988766554433
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.26 E-value=3.6e-06 Score=73.24 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-PMSPD-V---ATWGALLGACKKHGDHEMGERVGRKLVELQPDH---DGFHVLLSNIH 639 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 639 (798)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|+..++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776665 11222 2 466677777777888888888888888888877 56677778888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|.+.++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888777653
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=6.3e-06 Score=78.12 Aligned_cols=168 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred hHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003746 470 MYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEG 546 (798)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 546 (798)
.....|.++.|.+.++...+. ....|..+...+...|++++|+..|++..+. .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 334455566666555433221 2345666666777777777777777776663 2221100000 00000
Q ss_pred HHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003746 547 HRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVEL 624 (798)
Q Consensus 547 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (798)
. .. .....+..+..+|.+.|++++|...+++. ...| +..+|..+..++...|++++|+..+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245667778888888888888888776 3333 6778999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 003746 625 QPDHDGFHVLLSNIHASKGRWDDVL-EVRGMMVRR 658 (798)
Q Consensus 625 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 658 (798)
.|+++..+..++.++...|+.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888888777 445555443
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=6.5e-06 Score=70.68 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788899999999999999999987 22 3468889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003746 641 SKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 641 ~~g~~~~a~~~~~~m~~~~ 659 (798)
..|++++|.+.++.+.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=71.57 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
.+..+...+...|++++|...|++.++ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 444444555555555555555555543 2343 345555666666666666666666554 2223 566777788
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
.++...|++++|...+++++++.|++...+..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888877666665553
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.23 E-value=7.6e-06 Score=80.58 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=136.7
Q ss_pred hcCCHHHHHHHHhhcCCCC---cchHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 003746 473 KLGCVDNALEVFHGTEEKG---VSSWNAL-------IIGFAMNGLADKSLEMFSEMKKSGVTPNEI-------------- 528 (798)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~---~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 528 (798)
..++...|.+.|.+....| ...|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998877543 4578877 4566666666666666555443 333321
Q ss_pred --------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 003746 529 --------TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDV----A 596 (798)
Q Consensus 529 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 596 (798)
....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 233455678889999999999988753 3454326667777899999999999999977433433 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVELQ--PD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++..+..++...|++++|+..++++..-. |. .+...+.++.++.+.|+.++|..+++++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78889999999999999999999998543 55 44577889999999999999999999998743
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=1e-05 Score=73.96 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGA 604 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 604 (798)
..+..+...+...|++++|...|++.++. .| +...|..+...|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35666667777788888888888887663 44 4677778888888888888888888876 3344 58889999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 605 CKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...|++++|+..+++++++.|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665554
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=8.5e-06 Score=72.61 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667888899999999999999999987 56676 678999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003746 637 NIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.8e-06 Score=70.48 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGAC 605 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 605 (798)
.+..+...+...|++++|...|++.++. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555566667777777777777777653 34 4667777778888888888888887776 3334 577888899999
Q ss_pred HHcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 003746 606 KKHGDHEMGERVGRKLVELQ------PDHDGFHVLLSNIH 639 (798)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 639 (798)
...|++++|+..+++++++. |++......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999998 88777766665543
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=5.6e-06 Score=72.17 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=88.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3667888999999999999999999987 4445 6889999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003746 640 ASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~ 658 (798)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=4.3e-06 Score=74.25 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVEL-------QPDHDGFH----VLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|++.|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999999999999 99999999 99999999999999999999988763
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1.2e-05 Score=73.30 Aligned_cols=65 Identities=9% Similarity=0.159 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..+|..+..+|...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34678888999999999999999999999999999999999999999999999999999988764
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=8.2e-06 Score=70.73 Aligned_cols=98 Identities=6% Similarity=-0.011 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-PMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+..+...+...|++++|.+.+++. ... .+..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567778889999999999999999987 333 36888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003746 640 ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m~~~~ 659 (798)
...|++++|.+.++...+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.12 E-value=3.6e-05 Score=70.01 Aligned_cols=127 Identities=11% Similarity=-0.016 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHH
Q 003746 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVD 571 (798)
Q Consensus 493 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 571 (798)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777888888888888888877742 224556777778888888888888888888763 34 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGA--LLGACKKHGDHEMGERVGRKLVE 623 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 623 (798)
.|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888999888888876 2233 4455533 33346777888888888877654
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=1.9e-05 Score=68.32 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHH
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLS 636 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 636 (798)
+..+...+...|++++|...+++. .. +.+..+|..+...+...|++++|...+++++++.|++ +..+..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344445555555555555555544 11 2245555556666666666666666666666655544 45555666
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003746 637 NIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 637 ~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+|...|++++|.+.++...+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666665554
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=1.8e-05 Score=81.97 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE----------------ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
...|..+...|.+.|++++|+..|++..+. .|+. ..+..+..++.+.|++++|...++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346777777788888888888888888774 3443 6788888889999999999999999876
Q ss_pred hCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 003746 556 EHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMG-ERVGRKLVE 623 (798)
Q Consensus 556 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 623 (798)
+.| +...|..+..+|...|++++|.+.|+++ ...| +..+|..+..++...|+.++| ...++++++
T Consensus 225 ---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 ---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 4778888999999999999999999887 3444 577888899999999999888 456777764
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=2.9e-05 Score=84.56 Aligned_cols=116 Identities=9% Similarity=0.085 Sum_probs=56.1
Q ss_pred HHhhHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 003746 467 LIDMYMKLGCVDNALEVFHGTEE---KGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGL 542 (798)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 542 (798)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 33445555666666666654432 23445555555555555566665555555553 333 2345555555555555
Q ss_pred HHHHHHHHHHHHHhCCCcCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 003746 543 VDEGHRHFNSMIQEHRLEPN-SKHYGCMVDL--LGRAGMLKEAEELIE 587 (798)
Q Consensus 543 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 587 (798)
+++|.+.|+++++. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555555442 232 2333333333 444555555555554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=2.2e-05 Score=68.91 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
+...+..+...+...|++++|...|++.++. .| +...+..+...|...|++++|...+++. ...| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556777777777788888888888877653 34 3667777888888888888888888776 3334 577888999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.++...|++++|+..+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999998887
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=2.5e-06 Score=72.90 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 003746 576 AGMLKEAEELIESM-PM---SP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 650 (798)
.|++++|+..|++. .. .| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666555 32 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 003746 651 VRGMMVR 657 (798)
Q Consensus 651 ~~~~m~~ 657 (798)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.1e-05 Score=69.27 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACK 606 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 606 (798)
+..+...+.+.|++++|...|+++++ ..| +...+..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34445566677777777777777765 345 4666777777788888888888887776 3344 5678888888888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCc
Q 003746 607 KHGDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~ 629 (798)
..|++++|+..++++++++|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88999999999999999888764
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=2.1e-05 Score=85.28 Aligned_cols=143 Identities=9% Similarity=-0.034 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -++..+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666777777777777777776652 2222100 0 000000 000 01456778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999888887 3334 68889999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHH
Q 003746 650 EV-RGMMV 656 (798)
Q Consensus 650 ~~-~~~m~ 656 (798)
+- ++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 53 45554
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=4.9e-05 Score=65.80 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-c---chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003746 533 VLGACRHMGLVDEGHRHFNSMIQEHRLEPN-S---KHYGCMVDLLGRAGMLKEAEELIESM-PMSPD----VATWGALLG 603 (798)
Q Consensus 533 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 603 (798)
+...+...|++++|...|+++++. .|+ . ..+..+...|.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555667777777777776653 233 2 35666777777778888887777766 22232 566788888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 003746 604 ACKKHGDHEMGERVGRKLVELQPDHDGFHVLLS 636 (798)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 636 (798)
++...|++++|...++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999999999998876554443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=2.7e-05 Score=70.28 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCcc
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM----PMSPD----VATWGALLGACKKHGDHEMGERVGRKLVELQP------DHDG 630 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 630 (798)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555666666666666665554 00111 34566777777888888888888888776522 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 631 FHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 631 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567788888889999999888887654
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.00036 Score=71.09 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcCCC---CcchHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHH-------
Q 003746 477 VDNALEVFHGTEEK---GVSSWNALIIGFAMN-G-LADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVD------- 544 (798)
Q Consensus 477 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~------- 544 (798)
++++++.++.+... +..+|+.-...+... + ++++++++++++.+.. .-|...|..-.....+.|..+
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 55555555554432 234555555444444 4 5566666666666532 113334444444444434333
Q ss_pred -HHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh--
Q 003746 545 -EGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM-------LKEAEELIESM-PMSP-DVATWGALLGACKKHGDH-- 611 (798)
Q Consensus 545 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-- 611 (798)
+++++++++++. .| |...|+....++.+.|+ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 184 GSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 677777777653 33 45566666666666665 67777777665 3334 677888777777766654
Q ss_pred ------------------hHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 612 ------------------EMGERVGRKLVELQ------PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 612 ------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
........++.... +..+.....|+++|...|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222222 34555677899999999999999999999864
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.0019 Score=65.76 Aligned_cols=231 Identities=14% Similarity=0.073 Sum_probs=154.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccc-chhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhc-C
Q 003746 399 SGYAQHDQFSETLSLFMEMQHHGIRPDEA-TLVSVISACTHLV-ALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKL-G 475 (798)
Q Consensus 399 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 475 (798)
....+.+..++|++++.++... .|+.. .++.--..+...+ .++++..+++.+++... .+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 3344455566777777777764 34433 3444444444555 47777777777776543 3555666655555555 6
Q ss_pred -CHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-
Q 003746 476 -CVDNALEVFHGTEEKG---VSSWNALIIGFAMNGLAD--------KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL- 542 (798)
Q Consensus 476 -~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 542 (798)
++++++++++.+.+.| ..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7788999998888654 457777666666666666 8999999999853 2355677777777777665
Q ss_pred ------HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC---
Q 003746 543 ------VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGML--------------------KEAEELIESM-PM--- 591 (798)
Q Consensus 543 ------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~--- 591 (798)
++++++++++++. ..| |...|+-+-.++.+.|+. .+..++..++ ..
T Consensus 218 ~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 7889999988876 456 577777777777777653 3444444444 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hcCCCCcchHHHHH
Q 003746 592 ----SPDVATWGALLGACKKHGDHEMGERVGRKLV-ELQPDHDGFHVLLS 636 (798)
Q Consensus 592 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 636 (798)
.+....+..|+..|...|+.++|.++++.+. +.+|-...++....
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2577889999999999999999999999987 67887666655443
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.3e-05 Score=83.29 Aligned_cols=164 Identities=10% Similarity=-0.084 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCcCC-cc
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSG-VTPNEI----TFVGVLGACRHMGLVDEGHRHFNSMIQE---HRLEPN-SK 564 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~ 564 (798)
++..++..|...|++++|.+.+.++...- ..++.. ....+-..+...|+.+++..+++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36677888888888888888888765421 112221 1222223344568889999888877542 122222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CC----c
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-----P--MSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP---DH----D 629 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~ 629 (798)
.+..++..|...|++++|..++++. . .++ ...++..++..|...|++++|...+++++...| ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778899999999999999998875 1 122 245788889999999999999999999886532 22 2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.++..++.++...|++++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566778888899999999988876643
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00079 Score=68.24 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=60.0
Q ss_pred HhCCCh-HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccc----------hhHHHHHHHHHHHcCCCCcHHHHhHHHh
Q 003746 402 AQHDQF-SETLSLFMEMQHHGIRPDEAT-LVSVISACTHLVA----------LDQGKWIHAYIRKNGLKINSILGTTLID 469 (798)
Q Consensus 402 ~~~g~~-~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 469 (798)
.+.|.+ ++|++++..+... .|+..| ++.=-..+...+. ++++..+++.++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344544 4778888877763 455443 2221111111111 345555555555543 224445544444
Q ss_pred hHHhcC--CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC-hHHHHHHHHHHHHC
Q 003746 470 MYMKLG--CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL-ADKSLEMFSEMKKS 521 (798)
Q Consensus 470 ~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~ 521 (798)
.+.+.| .++++..+++.+.+. |..+|+--...+...|. ++++++.++++++.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 445555 356666666655532 34456555555555565 36666666666654
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.3e-05 Score=71.18 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-P-------MSPD-VATW----GALLGACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3775 5688 999999999999999999999999999998765
Q ss_pred HHHH
Q 003746 632 HVLL 635 (798)
Q Consensus 632 ~~~l 635 (798)
.--+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=3.9e-05 Score=64.22 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP---DVATWGALLG 603 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 603 (798)
.+..+...+...|++++|...|+++++. .| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444555566666666666666666552 23 3556666777777777777777777765 2233 4778888888
Q ss_pred HHHHc-CChhHHHHHHHHHHhcCCCCc
Q 003746 604 ACKKH-GDHEMGERVGRKLVELQPDHD 629 (798)
Q Consensus 604 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 629 (798)
.+... |++++|++.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999998888764
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=3.6e-05 Score=66.71 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC-cchHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVD 571 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 571 (798)
+|..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.+++.++ +.|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHH--
Confidence 3445555566666666666666665552 333 23455555556666666666666655543 1221 1111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
..+|..+..++...|++++|++.++++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666666677777777777777766664
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=2.9e-05 Score=81.38 Aligned_cols=137 Identities=8% Similarity=0.010 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHH
Q 003746 493 SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVD 571 (798)
Q Consensus 493 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 571 (798)
..|..+...+.+.|++++|++.|++.++. .|+. ..... .+.. ....| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~---~~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADG---AKLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHH---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHH---HHHHHHHHHHHHHHHH
Confidence 34666677777777777777777766641 1100 00000 1111 01233 3677888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVL 649 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 649 (798)
+|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|+..+++++++.|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5555 57889999999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 003746 650 EV 651 (798)
Q Consensus 650 ~~ 651 (798)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=5.7e-05 Score=65.27 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 003746 530 FVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESM-PM----SPD----VATWGA 600 (798)
Q Consensus 530 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 600 (798)
+..+...+...|++++|..+|+++++. .+.+...+..+...|...|++++|...++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555442 1123444555555556666666666655554 11 122 567778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH 639 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 639 (798)
+...+...|++++|...++++++..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 88888888888888888888888888 455555555443
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=3.1e-05 Score=77.91 Aligned_cols=103 Identities=8% Similarity=-0.124 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003746 526 NEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALL 602 (798)
Q Consensus 526 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 602 (798)
+...+..+...+...|++++|...|+++++. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456677777888888888888888888763 45 4677778888888888888888888776 4445 567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCcch
Q 003746 603 GACKKHGDHEMGERVGRKLVELQPDHDGF 631 (798)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 631 (798)
.++...|++++|+..+++++++.|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 88888888888888888888888776433
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=2e-05 Score=71.84 Aligned_cols=76 Identities=16% Similarity=0.012 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHD-GFHVLLSNI 638 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 638 (798)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467788888899999999999988877 3344 678899999999999999999999999999999987 445455433
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=8e-05 Score=70.35 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 688889999999999999999999999999999999999999999999999999999988764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=1.2e-05 Score=68.52 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=65.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003746 540 MGLVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGER 616 (798)
Q Consensus 540 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 616 (798)
.|++++|+..|+++++...-.| +...+..+...|.+.|++++|.+.|++. ...| +..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677777777654100024 3566777777788888888888887776 3334 57788888889999999999999
Q ss_pred HHHHHHhcCCCCcchHH
Q 003746 617 VGRKLVELQPDHDGFHV 633 (798)
Q Consensus 617 ~~~~~~~~~p~~~~~~~ 633 (798)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876543
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=3.5e-05 Score=69.55 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC----cch
Q 003746 495 WNALIIGFAMNGLADKSLEMFSEMKKSGVT-PNE----ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN----SKH 565 (798)
Q Consensus 495 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 565 (798)
+..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555555555555555554432100 111 24555556666677777777777665542111111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 566 YGCMVDLLGRAGMLKEAEELIESM-------PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 566 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 666777777777777777777665 1111 134677788888888999999999988887543
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.1e-05 Score=81.60 Aligned_cols=147 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHH
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLL 573 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 573 (798)
.|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 466677777888888888888888776 3455432 223344444432221 13667788888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChhHHHH
Q 003746 574 GRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIH-ASKGRWDDVLE 650 (798)
Q Consensus 574 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~ 650 (798)
.+.|++++|...+++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..|..+. ...+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 3334 6778888888899999999999999999999998888888887774 44567778888
Q ss_pred HHHHHHhCCC
Q 003746 651 VRGMMVRRGV 660 (798)
Q Consensus 651 ~~~~m~~~~~ 660 (798)
.++.|.....
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8888765443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.00023 Score=78.97 Aligned_cols=167 Identities=8% Similarity=-0.014 Sum_probs=135.1
Q ss_pred CHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003746 476 CVDNALEVFHGTEEK---GVSSWNALIIGFAMNGL----------ADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMG 541 (798)
Q Consensus 476 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 541 (798)
..++|.+.++.+... +..+|+.--..+...|+ ++++++.++++.+. .|+ ...|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 346777777776643 34577777777777777 89999999999985 444 457888888888888
Q ss_pred --cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 003746 542 --LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAG-MLKEAEELIESM-PMSP-DVATWGALLGACKKH------- 608 (798)
Q Consensus 542 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 608 (798)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++.+.++++ ...| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999873 45 5777888888888889 899999999988 4455 788999888887763
Q ss_pred -------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 003746 609 -------GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDD 647 (798)
Q Consensus 609 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 647 (798)
+.++++++.++++++++|++...|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988665
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=6e-05 Score=81.54 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=91.7
Q ss_pred HHhcCcHHHHHHHHHHHHHhCC--CcC---C-cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHR--LEP---N-SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGA 600 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 600 (798)
+...|++++|..++++.++... +-| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777777766654311 112 2 456777888888888888888877765 33454 457899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCcchH---HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVE-----LQPDHDGFH---VLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|...|...|++++|+.+++++++ +.|+++.+- ..|..++...|++++|..++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 578876554 467788889999999999999998643
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=1.5e-05 Score=82.62 Aligned_cols=114 Identities=6% Similarity=-0.071 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
.+..+...+.+.|++++|...|+++++. .|+.. .+...|+.+++...+. ...|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667778889999999999988763 34322 1334455555554432 13788899999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999887644
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.0018 Score=65.66 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=150.5
Q ss_pred cccch-hHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCC----------HHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 003746 438 HLVAL-DQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGC----------VDNALEVFHGTEE---KGVSSWNALIIGFA 503 (798)
Q Consensus 438 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 503 (798)
+.|.+ ++|..+.+.++..+.. +..+|+.--..+...|. ++++..+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33444 3677888887775432 33444443333333332 6788888887764 45678888888888
Q ss_pred HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhc---
Q 003746 504 MNGL--ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGL-VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRA--- 576 (798)
Q Consensus 504 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 576 (798)
..|+ +++++++++++.+.. .-|...|+.-...+.+.|. +++++++++++++. .| |...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence 8884 899999999999853 2355677777777777887 69999999999874 45 566677666666554
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHhcCCCCcchH
Q 003746 577 -----------GMLKEAEELIESM-PMSP-DVATWGALLGACKKH-----------GDHEMGERVGRKLVELQPDHDGFH 632 (798)
Q Consensus 577 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~ 632 (798)
+.++++++.+++. ...| |..+|+.+-..+... +.++++++.++++++++|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5688999998887 3334 788898776666654 457899999999999999985544
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHhCC
Q 003746 633 VLLSNIH---ASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 633 ~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 659 (798)
..++.+. ...|..++....+.++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4333221 23577778888888887643
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=7.1e-05 Score=61.58 Aligned_cols=66 Identities=24% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999988753
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0002 Score=77.02 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=115.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCc-
Q 003746 501 GFAMNGLADKSLEMFSEMKKSGVTPN----------------EITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNS- 563 (798)
Q Consensus 501 ~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 563 (798)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34567788888888887776422211 1236778899999999999999999887643222222
Q ss_pred ---chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CC
Q 003746 564 ---KHYGCMVDLLGRAGMLKEAEELIESM-------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVEL------QP 626 (798)
Q Consensus 564 ---~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p 626 (798)
.+.+.+...+...|++++|.+++++. ...+. ..++..|...+...|++++|...+++++.. .|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23445555666789999999988765 22232 567888999999999999999999998753 23
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 627 DHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 627 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
....++..++.+|...|++++|..++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3345788899999999999999999988764
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=3.3e-05 Score=64.79 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------cchHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDH------DGFHVL 634 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 634 (798)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..+++++++.|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667778888888888888888876 3334 67889999999999999999999999999999998 667778
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 003746 635 LSNIHASKGRWDDVLEVRG 653 (798)
Q Consensus 635 l~~~~~~~g~~~~a~~~~~ 653 (798)
++.++...|+.++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888777777655443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.74 E-value=0.00012 Score=76.72 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003746 528 ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSP-DVATWGALLGACK 606 (798)
Q Consensus 528 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 606 (798)
..+..+...+.+.|++++|.+.|+++++.. |.. ...-..+++. ...| +..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356666677777888888888887776521 110 0001111111 1223 4678999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 607 KHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=1.9e-05 Score=69.86 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 003746 576 AGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGD----------HEMGERVGRKLVELQPDHDGFHVLLSNIHASKG 643 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 643 (798)
.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34445555555444 2223 44555555555554444 569999999999999999999999999999875
Q ss_pred -----------ChhHHHHHHHHHHhCCC
Q 003746 644 -----------RWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 644 -----------~~~~a~~~~~~m~~~~~ 660 (798)
++++|.+.|++..+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999987543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00012 Score=58.66 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003746 563 SKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHA 640 (798)
Q Consensus 563 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 640 (798)
...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777777778888887777766 2233 57788888889999999999999999999999999888888888876
Q ss_pred hcC
Q 003746 641 SKG 643 (798)
Q Consensus 641 ~~g 643 (798)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00011 Score=62.22 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=64.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 581 EAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 581 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 67788899999999999999999999999999999999999999999999999999999888653
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00028 Score=76.44 Aligned_cols=112 Identities=9% Similarity=-0.078 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKH 608 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 608 (798)
.+..+...+.+.|++++|...|+++++. .|+...+ .-++..+ .+. -...+|..+..+|.+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~-~~~----~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL-----------SEKESKA-SES----FLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC-----------CHHHHHH-HHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC-----------ChHHHHH-HHH----HHHHHHHHHHHHHHHh
Confidence 4555666666677777777777666542 2221110 0011110 000 0256888999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998754
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.66 E-value=0.00046 Score=55.53 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
++|...|..+..++...++ .++|..+++++++++|+++.....++.++...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3578888888888876655 79999999999999999999999999999999999999999999988654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00018 Score=77.86 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCcc---hHH
Q 003746 572 LLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHDG---FHV 633 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 633 (798)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999998775 22343 45789999999999999999999999986 4566654 567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKL 704 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 704 (798)
.|+.+|..+|++++|..++++..+.-.. .. ...||...++..+|.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988652111 11 12499999999888888776544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=5.9e-05 Score=66.74 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 003746 542 LVDEGHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGM----------LKEAEELIESM-PMSP-DVATWGALLGACKKH 608 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 608 (798)
.+++|.+.++..++ +.| +...|..+..++...|+ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44444444444443 223 24444444444444433 34666666555 3344 355666666666655
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 609 -----------GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 609 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
|++++|++.|+++++++|++..+...+. ..++|.++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccc
Confidence 5899999999999999999865444432 234555555544443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.00026 Score=75.40 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=83.6
Q ss_pred HHHHhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---chH
Q 003746 571 DLLGRAGMLKEAEELIESM------PMSP---D-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHD---GFH 632 (798)
Q Consensus 571 ~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~ 632 (798)
+-+.+.|++++|++++++. -+.| + ..+++.|+.+|...|++++|+.+++++++ +.|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654 1122 2 44788888999999999999999998885 355554 456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 003746 633 VLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLK 703 (798)
Q Consensus 633 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 703 (798)
..|+.+|...|++++|..++++..+.-. +.- ...||...+++..|++...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988865211 111 1249999999999988888775
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00037 Score=58.09 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 593 PDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
++...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788999999999999999999999999999999999999999999999999999999988754
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00025 Score=75.36 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---chHHHHHH
Q 003746 576 AGMLKEAEELIESM---------PMSPD-VATWGALLGACKKHGDHEMGERVGRKLVE-----LQPDHD---GFHVLLSN 637 (798)
Q Consensus 576 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~ 637 (798)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 22233 34678888888888888888888888875 345554 45667888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003746 638 IHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 638 ~~~~~g~~~~a~~~~~~m~~ 657 (798)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999998888765
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0016 Score=57.03 Aligned_cols=111 Identities=7% Similarity=-0.081 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHH
Q 003746 542 LVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKK----HGDHEMGERV 617 (798)
Q Consensus 542 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 617 (798)
++++|.++|++..+. | .|+ .. |..+|...+..++|.+.|++.-..-+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666665442 2 122 22 555565666666666666665223456666666666666 6777777777
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 003746 618 GRKLVELQPDHDGFHVLLSNIHAS----KGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 618 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 660 (798)
++++.+. .++.....|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777765 456677777777777 7788888888877776653
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.29 E-value=7e-06 Score=84.38 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=193.7
Q ss_pred CCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 003746 77 PFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDH 156 (798)
Q Consensus 77 ~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~ 156 (798)
..++++.|...-++...|. .|..+..+....+...+|++-|-+ .-|+..|.-++.++.+.|.+++-...+..
T Consensus 37 ~i~~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~M 108 (624)
T 3lvg_A 37 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 108 (624)
T ss_dssp GGCCSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHT
T ss_pred hccccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455665555555554454 588899999999999999876632 24777899999999999999999988887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHH
Q 003746 157 VLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIV 236 (798)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 236 (798)
+.+. ..++.+-+.|+-+|++.+++.+-.+.+ ..+|+.-...+..-+...|.++.|.-+|..+.. |..|..
T Consensus 109 aRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAs 178 (624)
T 3lvg_A 109 ARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLAS 178 (624)
T ss_dssp TSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSS
T ss_pred HHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHH
Confidence 7765 466778899999999999976644433 256777777888888888888888877776543 344555
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 316 (798)
.+.+.|++..|.+.-++. .++.||-.+-.+|...+.+.-|.-.--.++-. ||. +..++..|-..|.+++-..+
T Consensus 179 tLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 179 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHH
Confidence 566777777776554432 47889999999999999998876665444422 221 22344556677777777766
Q ss_pred HHHHHHhCC-ccchhHHHHHHHHHHhCCCHHHHHHHHH---h-cCCC-------ChhhHHHHHHHHHhcCCHHHHHH
Q 003746 317 HALAVKIGI-ECYINLQNALIHMYSSCGEITTAEKLFD---A-GHNL-------DLISWNSMISGYLKCGSVEKARA 381 (798)
Q Consensus 317 ~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~---~-~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 381 (798)
++..+ |+ .....+++-|.-.|+|- +.++-.+.++ + ..-| ....|.-++-.|.+-.++|.|..
T Consensus 252 lEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 252 LEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 66554 33 35677888888888876 3444444443 2 2222 23458888888888888887753
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=0.0033 Score=69.64 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=121.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCc----------HHHHHHHHHHHHHhCCCcC-CcchHHHHHHH
Q 003746 505 NGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGL----------VDEGHRHFNSMIQEHRLEP-NSKHYGCMVDL 572 (798)
Q Consensus 505 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 572 (798)
....++|++.++++.. ..|+.. .|+.--.++.+.|+ ++++.+.++++++. .| +...|+.-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445688999999998 567765 46655555666666 89999999999873 45 46778888888
Q ss_pred HHhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-----
Q 003746 573 LGRAG--MLKEAEELIESM-PMS-PDVATWGALLGACKKHG-DHEMGERVGRKLVELQPDHDGFHVLLSNIHASK----- 642 (798)
Q Consensus 573 ~~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 642 (798)
+.+.| ++++|.++++++ ... .+..+|+.-..++...| .++++++.++++++.+|++..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 333 47889999999998988 899999999999999999999999999988774
Q ss_pred ---------CChhHHHHHHHHHHhC
Q 003746 643 ---------GRWDDVLEVRGMMVRR 658 (798)
Q Consensus 643 ---------g~~~~a~~~~~~m~~~ 658 (798)
++++++.+.++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888777653
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.0036 Score=63.58 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 003746 490 KGVSSWNALIIGFA--MNGL---ADKSLEMFSEMKKSGVTPNEI-TFVGVLGAC 537 (798)
Q Consensus 490 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 537 (798)
.+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46667777665543 2233 4678888988888 567753 344433333
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.21 E-value=0.00092 Score=53.21 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999999999999999999999999999999999988764
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.06 E-value=0.0016 Score=54.71 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 546 GHRHFNSMIQEHRLEP-NSKHYGCMVDLLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 546 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
+...|+++++ ..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555665543 334 3566667777777777777777777765 2233 56778888888888888888888888888
Q ss_pred hcCCCC
Q 003746 623 ELQPDH 628 (798)
Q Consensus 623 ~~~p~~ 628 (798)
++.|+.
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887754
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.0023 Score=67.89 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHHHHhC--CCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHH
Q 003746 541 GLVDEGHRHFNSMIQEH--RLEPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGALLGA 604 (798)
Q Consensus 541 g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~ 604 (798)
|++++|..++++.++.. -+-|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555555555544321 11121 345666666677777777776666654 33454 4578899999
Q ss_pred HHHcCChhHHHHHHHHHHh-----cCCCCcchHHH
Q 003746 605 CKKHGDHEMGERVGRKLVE-----LQPDHDGFHVL 634 (798)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 634 (798)
|...|++++|+.+++++++ +.|+++.+-.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 9999999999999999986 57888755443
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.01 E-value=0.0058 Score=53.38 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHh----cCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGR----AGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 581 (798)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998877 44433 556667777888899999998663 356777888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 003746 582 AEELIESMPMSPDVATWGALLGACKK----HGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 582 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 626 (798)
|.+.|++.-..-+...+..|...|.. .++.++|.+.++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988333577888889888888 8899999999999988743
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.0044 Score=54.13 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcc
Q 003746 592 SPDVATWGALLGACKKHG---DHEMGERVGRKLVELQ-P-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGC 666 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 666 (798)
.++..+...+.+++.+.+ +.++|+.+++++++.+ | ++..+++.|+-.|.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 367777778888888877 5668888888888877 6 45677788888888888888888888888763
Q ss_pred ceEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCC
Q 003746 667 SMIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708 (798)
Q Consensus 667 s~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 708 (798)
.|...++....+.+.+++++.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 244455666666667777777765
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0051 Score=65.39 Aligned_cols=99 Identities=14% Similarity=0.018 Sum_probs=65.7
Q ss_pred HHhcCcHHHHHHHHHHHHHhCC--CcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003746 537 CRHMGLVDEGHRHFNSMIQEHR--LEPN----SKHYGCMVDLLGRAGMLKEAEELIESM---------PMSPD-VATWGA 600 (798)
Q Consensus 537 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 600 (798)
+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666666543211 1121 345666677777777777777776654 33454 457889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCcchHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVE-----LQPDHDGFHVLL 635 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l 635 (798)
|...|...|++++|+.+++++++ +.|+++.+-..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999986 578887665543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.018 Score=67.42 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHHhcCChHHHHH-HHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhc
Q 003746 175 MYAVCGDLSAARK-LFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKE 253 (798)
Q Consensus 175 ~y~~~g~~~~A~~-~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 253 (798)
.....+++++|.+ ++..++. ......++..+.+.|..++|+++.+.- ..-.......|++++|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3345788888887 6644441 112366777778888888888766421 1223456678999999999877
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHHH
Q 003746 254 MPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQN 333 (798)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 333 (798)
+. +...|..+...+.+.|+++.|.++|.++.. |..+...+...++.+....+-......|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 64 567899999999999999999999998854 44444444445655555444444443331 12
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 003746 334 ALIHMYSSCGEITTAEKLFD 353 (798)
Q Consensus 334 ~li~~y~~~g~~~~A~~~~~ 353 (798)
.-...|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 33334555555555555544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.0074 Score=61.33 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHH--hc---CcHHHHHHHHHHHHHhCCCcCC-cchHHHHHHHHH----hcC-------CHHHHHHHH
Q 003746 524 TPNEITFVGVLGACR--HM---GLVDEGHRHFNSMIQEHRLEPN-SKHYGCMVDLLG----RAG-------MLKEAEELI 586 (798)
Q Consensus 524 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~----~~g-------~~~~A~~~~ 586 (798)
+.|...|...+.+.. .. ....+|..+|+++++ +.|+ ...|..+..+|. ..+ .+..|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445556666665543 22 346899999999987 5786 455554444332 111 112233322
Q ss_pred HhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 587 ESMPM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 587 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
..+.. +.+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++......
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23322 347888988888888889999999999999999975 56788999999999999999999998876543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.87 E-value=0.0041 Score=50.43 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003746 569 MVDLLGRAGMLKEAEELIESM-PMSP-DVA-TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRW 645 (798)
Q Consensus 569 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 645 (798)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677788888888888776 3334 566 88889999999999999999999999999998876532 344
Q ss_pred hHHHHHHHH
Q 003746 646 DDVLEVRGM 654 (798)
Q Consensus 646 ~~a~~~~~~ 654 (798)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0027 Score=51.56 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDG-FHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999988754
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.42 E-value=0.01 Score=48.28 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 492 VSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPN-EITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 492 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555556666666666555553 232 23455555555555666666655555543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.14 Score=59.57 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
+.|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. +..+...+...++.+....+-+.
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 6677777777766553 456778888888888888888888776642 22333333345555554444444
Q ss_pred HHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 003746 452 IRKNGLKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSE 517 (798)
Q Consensus 452 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 517 (798)
....|. ++....+|.++|++++|.+++ .+.+++++|+.+-+.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 444331 233344566677777777664 344666666665543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.23 E-value=0.013 Score=57.04 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=68.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhH
Q 003746 579 LKEAEELIESM-PMSPD---VATWGALLGACKK-----HGDHEMGERVGRKLVELQPDH-DGFHVLLSNIHASK-GRWDD 647 (798)
Q Consensus 579 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 647 (798)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.|++++++.|+. ...++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 44555 5577788877777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003746 648 VLEVRGMMVRRGVVKIPG 665 (798)
Q Consensus 648 a~~~~~~m~~~~~~~~~~ 665 (798)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664455
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.19 E-value=0.32 Score=40.71 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=91.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHH
Q 003746 504 MNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAE 583 (798)
Q Consensus 504 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 583 (798)
-.|..++..++..+.... .+..-++-++--....-+=+-..+.++.+-+-+.+ ..+|.+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666666666666542 23334444443333333444444455544222222 2456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 584 ELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 584 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
..+-.++ .+....+.-+.....+|+.++-.+++..++.-+|-++.+.+-++++|.+.|+..+|.+++++.=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6666664 244445666778889999999999999987777777899999999999999999999999999999985
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.99 E-value=0.028 Score=46.02 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 568 CMVDLLGRAGMLKEAEELIESM-----P----MSPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
.|+..+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...+++++++.|+++.....+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4445555555555555555443 0 123467889999999999999999999999999999997765544
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.76 E-value=0.037 Score=44.18 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 561 PNSKHYGCMVDLLGRAGM---LKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
++...+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|+..++++++..|.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 356667777777754444 68888888877 4445 5778888888889999999999999999999888443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.53 E-value=0.034 Score=48.45 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 562 NSKHYGCMVDLLGRAG---MLKEAEELIESM-PMS-P--DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
+..+.-.+..++.+.+ +.+++..++++. ... | ....+..|.-+|.+.|++++|.+.++++++++|++.....+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444444444444444 334455444443 112 3 24566778888999999999999999999999998765554
Q ss_pred H
Q 003746 635 L 635 (798)
Q Consensus 635 l 635 (798)
.
T Consensus 111 k 111 (152)
T 1pc2_A 111 E 111 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.8 Score=40.94 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=81.1
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHR 548 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 548 (798)
+...++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456688888888887766 3566788888888888888888888887543 3444444555667665554
Q ss_pred HHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 549 HFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 549 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44433221 1 24444555667788888888887775322221 1223456666666665554
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.26 E-value=0.086 Score=44.16 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 593 PDVATWGALLGACKKHGDHEM---GERVGRKLVELQ-P-DHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 593 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
|+..+-..+.+++.+..+... ++.+++.++... | ..-.+.+.|+-.+.+.|++++|+++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444455555555444333 555555555544 3 2334455555556666666666666665554
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.91 E-value=5.8 Score=43.76 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHH
Q 003746 506 GLADKSLEMFSEMKKSGVTPNEITFVGV----LGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKE 581 (798)
Q Consensus 506 g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 581 (798)
.+.+.|..+|......+ ..+......+ .......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 2233322222 22233344345666666665332 2333333444455557899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 582 AEELIESMPMSP-D-VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 582 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
|...|+.|+..+ + ....-=+..+....|+.++|..+|+++.+ + .++|-.|
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 999999995432 2 22223355577788999999999999875 3 2456555
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.69 E-value=0.82 Score=38.92 Aligned_cols=91 Identities=8% Similarity=0.056 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccc
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCS 667 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 667 (798)
.|+..+-..+.+++.+..+ ..+++.+++.++...|. .-.+.+.|+-.|.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777776654 45778888888877774 4456667777888888888888888887763
Q ss_pred eEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCC
Q 003746 668 MIEANGIIHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708 (798)
Q Consensus 668 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 708 (798)
.|...++...-+.+.++|.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 244455666666667777777765
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.58 Score=41.83 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHH
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSV 316 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 316 (798)
...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|++... +..++-.+...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877665 3567899999999999999999999888754 34444444445665555544
Q ss_pred HHHHHHh
Q 003746 317 HALAVKI 323 (798)
Q Consensus 317 ~~~~~~~ 323 (798)
-+.....
T Consensus 83 a~iA~~~ 89 (177)
T 3mkq_B 83 QNIAQTR 89 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 4444433
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.51 E-value=0.044 Score=53.33 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCC
Q 003746 565 HYGCMVDLLGRA-----GMLKEAEELIESM-PMSP--DVATWGALLGACKK-HGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 565 ~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~ 627 (798)
.|..|+..|.+. |+.++|.+.|++. .+.| +..++......++. .|+.+++.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444444444442 5555555555554 3333 13444444444444 25555566666666555554
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.91 E-value=0.19 Score=52.26 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=221.8
Q ss_pred CchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHH
Q 003746 60 ADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYTYPLLAQ 139 (798)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t~~~ll~ 139 (798)
..+.+|+.|-. ++. +.|++.+|...| +...|...|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-
T Consensus 52 n~p~VWs~Lgk--AqL-~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAK--AQL-QKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHH--HTT-TSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CCccHHHHHHH--HHH-ccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 45678888888 887 778888886655 34467778899999999999999999988766654 344455578899
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC------------------------CC
Q 003746 140 ASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP------------------------VL 195 (798)
Q Consensus 140 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------~~ 195 (798)
++++.+++.+-.... -.||..-...+.+-+...|.++.|.-+|..+. ..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998875544332 14666666777888888888888888887643 23
Q ss_pred CcchHHHHHHHHHhCCCHHHHHH----HHhhCCC-----------------------------CCchHHHHHHHHHhhcC
Q 003746 196 DLVSWNSILAGYVNADNVEEAKF----IYNKMPE-----------------------------RNIIASNSMIVLFGRKG 242 (798)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~----~~~~m~~-----------------------------~~~~~~~~li~~y~~~g 242 (798)
++.+|-.+-.+|+..+.+.-|-- +.-...+ ...-.++-|.-.|+|-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 67789999888888776654422 2111110 1334567777777764
Q ss_pred CHHHHHHHHhc----CCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchH
Q 003746 243 NVAEACRLFKE----MPKK-------DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVK 311 (798)
Q Consensus 243 ~~~~A~~~f~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 311 (798)
+.++-.+-++. +--| +...|.-++-.|.+-.+++.|... |.+.. |+...-........+..+++
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~--~~Aw~h~~Fkdii~KVaN~E 351 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHP--TDAWKEGQFKDIITKVANVE 351 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCH--HHHCCGGGGTTTGGGCSCSH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCC--hhhccHHHHHHHHHHcchHH
Confidence 23333333222 2112 456788888888888888876543 22210 01010111111122222322
Q ss_pred HHHHHHHHHHHhCCccchhHHHHHHHHHHhCCCHHHHHHHHHh-------------cCCCChhh-HHHHHHHHHhcCCHH
Q 003746 312 AGTSVHALAVKIGIECYINLQNALIHMYSSCGEITTAEKLFDA-------------GHNLDLIS-WNSMISGYLKCGSVE 377 (798)
Q Consensus 312 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------------~~~~~~~~-~~~li~~~~~~g~~~ 377 (798)
.--+ ++..-+.-.+...|.|+..+...=+...+.++|++ ....|... -.++-..|....+++
T Consensus 352 iyYK----Ai~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 352 LYYR----AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp HHHH----HHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHH----HHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 2111 11111222333344455444444444444455443 22233332 334445556666655
Q ss_pred HHHHHHHhcC------------CCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhH
Q 003746 378 KARALFDAMI------------EKDVVSWSTM-ISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQ 444 (798)
Q Consensus 378 ~A~~~~~~m~------------~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 444 (798)
.-+...+.-. +.+..-+..+ ...|.++++|++++.+.++ .++ |.-.+...+.+++.+-
T Consensus 428 ~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAietAa~S~~~el 498 (624)
T 3lvg_A 428 ALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQYASESKDTEL 498 (624)
T ss_dssp HHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGTTTTTCCCTTH
T ss_pred HHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHHHHHHcCCHHH
Confidence 5444333222 2233333332 3457778888888776542 222 2223444567888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHH
Q 003746 445 GKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVF 484 (798)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 484 (798)
+.++++..++.|-. ..+.+.+-.+...=++|.+.++-
T Consensus 499 aeeLL~yFv~~g~~---EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 499 AEELLQWFLQEEKR---ECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHHHHHHHHHCST---HHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCch---HHHHHHHHHHhhccChHHHHHHH
Confidence 88888888887632 33334443444444566666653
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.63 E-value=0.24 Score=40.28 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 594 DVATWGALLGACKKHGDHEMGERVGRKLVELQ-------PDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
+..-+..|+..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556788999999999999999999998753 334567889999999999999999999998764
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.69 Score=52.02 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 003746 601 LLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
-..-|...|+++.|+++++++...-|++-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556778999999999999999999999999999999999999999999988874
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.80 E-value=1 Score=37.61 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=50.0
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHH
Q 003746 561 PNSKHYGCMVDLLGRAGMLKE---AEELIESM-PMS-P--DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHV 633 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 633 (798)
|+..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444455555555554444 55555554 212 3 2334566778899999999999999999999999977655
Q ss_pred HH
Q 003746 634 LL 635 (798)
Q Consensus 634 ~l 635 (798)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.63 E-value=0.93 Score=38.06 Aligned_cols=66 Identities=8% Similarity=0.015 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 592 SPDVATWGALLGACKKHGD---HEMGERVGRKLVELQPD-HDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 592 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
.|+..+--.+.+++.+..+ ..+++.+++.+++..|. .-.+++.|+-.+.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555556666655543 34677777777766663 345566667777777777777777777665
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.08 E-value=1.6 Score=37.51 Aligned_cols=55 Identities=9% Similarity=-0.061 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 576 AGMLKEAEELIESM-PM-SPDVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 576 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.++.++|.++|+.+ .. +.=..+|-....--.++|+.+.|.+++.+++++.|.+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 36667777777666 11 111667777777777889999999999999998887643
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.96 E-value=20 Score=35.73 Aligned_cols=164 Identities=13% Similarity=0.065 Sum_probs=87.9
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCchhHHHHHHHHhccC
Q 003746 233 SMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLF----MNMIDHRVMVDEVVVVSVLSACANLT 308 (798)
Q Consensus 233 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 308 (798)
++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 445556666777777666532 223445566665555444 33445677777777766666666544
Q ss_pred chH-----HHHHHHHHHHHhC--CccchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003746 309 VVK-----AGTSVHALAVKIG--IECYINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARA 381 (798)
Q Consensus 309 ~~~-----~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 381 (798)
.-+ -......+-.+.| ..-|+.....+...|.+.+++.+|+..|=.+..+.+..+..++--+.+.+...++
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~-- 186 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA-- 186 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--
Confidence 321 1222333334444 3456777888888888888888887777544444445554444433333321111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003746 382 LFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQ 418 (798)
Q Consensus 382 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 418 (798)
|. .....+--|...++...|..+|+...
T Consensus 187 --------dl-fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 --------PL-YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------HH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------HH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 11223334555566666666555443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.09 E-value=1.6 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=45.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 608 HGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
.+|.++|.++|+.++.+...-+-++...+..-.+.|+...|++++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 379999999999998875555667777788888999999999999998876653
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.94 E-value=50 Score=38.06 Aligned_cols=215 Identities=8% Similarity=0.008 Sum_probs=96.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CC---CHHH--HHHHHHH
Q 003746 369 GYLKCGSVEKARALFDAMIE----KDV--VSWSTMISGYAQHDQFSETLSLFMEMQHHGI--RP---DEAT--LVSVISA 435 (798)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---d~~t--~~~ll~a 435 (798)
|....|+.+++..+++.... .+. ..-..+.-|....|..++++.++.......- .- +... -..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 44566677777777776554 121 2233344455666666667776665544211 00 0111 1111111
Q ss_pred Hhcccc-hhHHHHHHHHHHHcCCCCcH--HHHhHHHhhHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChH
Q 003746 436 CTHLVA-LDQGKWIHAYIRKNGLKINS--ILGTTLIDMYMKLGCVDNALEVFHGTEEK---GVSSWNALIIGFAMNGLAD 509 (798)
Q Consensus 436 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 509 (798)
.+..|. -+++...+..++...- ... ...-+|.-.|.-.|+-+....++..+.+. ++.-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222222 1233333333333211 111 11122333344556666656655543321 1222233334455667777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEI-TFV---GVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEEL 585 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 585 (798)
.+..+.+.+... +|.. -|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777777652 2322 232 2334566777776666677776542 112222222222233335555555555
Q ss_pred HHhC
Q 003746 586 IESM 589 (798)
Q Consensus 586 ~~~~ 589 (798)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5443
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.28 E-value=27 Score=34.42 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred HHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH----H
Q 003746 207 YVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVL----F 282 (798)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~ 282 (798)
-...|++=||.+.++ ++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 344566666666544 455666666777777766532 22344556776655554 3
Q ss_pred HHHHHCCCCCCchhHHHHHHHHhccCc-----hHHHHHHHHHHHHhCC--ccchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 003746 283 MNMIDHRVMVDEVVVVSVLSACANLTV-----VKAGTSVHALAVKIGI--ECYINLQNALIHMYSSCGEITTAEKLFDAG 355 (798)
Q Consensus 283 ~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 355 (798)
+-..+.+++++......++..+..... ..-.........+.|- ..|+.....+...|.+.|++.+|+..|-.+
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 444456777777777777766654321 1222333333333332 346778888888888888888887777544
Q ss_pred CCCChhhHHHHHHHH
Q 003746 356 HNLDLISWNSMISGY 370 (798)
Q Consensus 356 ~~~~~~~~~~li~~~ 370 (798)
...|...+..++--+
T Consensus 161 ~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 161 THDSMIKYVDLLWDW 175 (312)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 333444444444333
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.67 E-value=23 Score=32.13 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003746 226 RNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMID 287 (798)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 287 (798)
++..+-...+..+++.|+.+....+...+..+|...-...+.++.+.|. .++...+.++..
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444444444443333333333444454444455555555554 345555555543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.23 E-value=6.9 Score=32.83 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHH
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVL 634 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 634 (798)
...+-.|.-++.+.|+++.|.+..+.+++.+|++..+..+
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4456678888999999999999999999999998765544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.16 E-value=5.9 Score=44.57 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003746 332 QNALIHMYSSCGEITTAEKLFDA---GHNLDLISWNSMISGYLKCGSVEKARALFDAMI 387 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (798)
.+.-++.+...|+++.|+++-++ ..+.+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34445667778999999999887 345567789999999999999999999999887
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.92 E-value=11 Score=32.01 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 003746 596 ATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLL 635 (798)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 635 (798)
...-.|.-++.+.|+++.|.+..+.+++.+|++..+..+.
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3455677889999999999999999999999997655443
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.83 E-value=7.5 Score=30.48 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
.+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++-.+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 4566799999999999988899999988765 45677777777776776554
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.53 E-value=7.2 Score=30.51 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=41.3
Q ss_pred HHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003746 237 LFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHR 289 (798)
Q Consensus 237 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 289 (798)
.+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++-.+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 4567799999999999999999999988865 46788888887777776655
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.34 E-value=19 Score=30.25 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=49.7
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchhHHHHHHHH
Q 003746 372 KCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALDQGKWIHAY 451 (798)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 451 (798)
.+|++......+-.+.. +....+.-+.....+|+-+.-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44444444444433322 223344455666677777777777666433 2456666777777777777777777777777
Q ss_pred HHHcCCC
Q 003746 452 IRKNGLK 458 (798)
Q Consensus 452 ~~~~~~~ 458 (798)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7666643
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.92 E-value=38 Score=33.36 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=102.4
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH----HH
Q 003746 340 SSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSL----FM 415 (798)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~ 415 (798)
...|++-+|.+. |.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 345566666554 34555566677777777776543 23345566776655554 44
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcccchh-HHHHHHHHHH----HcC--CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcC
Q 003746 416 EMQHHGIRPDEATLVSVISACTHLVALD-QGKWIHAYIR----KNG--LKINSILGTTLIDMYMKLGCVDNALEVFHGTE 488 (798)
Q Consensus 416 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 488 (798)
-..+.++++|..+...++..+.....-+ .-..+...++ +.| ..-++.....+...|.+.|++.+|+.-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 4556678888887777777665533211 1233333333 332 23477788888899999999999988775322
Q ss_pred CCCcchHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003746 489 EKGVSSWNALIIGFAMN---GLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQE 556 (798)
Q Consensus 489 ~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 556 (798)
..+...+..|+.-+... |...++-- ..-.+++ -|.-.|++..|...|+...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 22344444444433333 33322211 1112222 344567888888888877553
No 251
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.40 E-value=29 Score=31.67 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCCCCchHHHHHHHHHhhcCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHH
Q 003746 223 MPERNIIASNSMIVLFGRKGNVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLS 302 (798)
Q Consensus 223 m~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 302 (798)
+..++..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|.. +++..+.++.. .++...-...+.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 33344444444455555555444333444444444444444444555554443 23333333332 133333334444
Q ss_pred HHhccCc
Q 003746 303 ACANLTV 309 (798)
Q Consensus 303 a~~~~~~ 309 (798)
++...+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 4444443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.81 E-value=37 Score=35.66 Aligned_cols=203 Identities=10% Similarity=0.089 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHhHHHh----hHHhc
Q 003746 405 DQFSETLSLFMEMQHH-----GIRPDEATLVSVISACTHLVALDQGKWIHAYIRKN-GLKINSILGTTLID----MYMKL 474 (798)
Q Consensus 405 g~~~~A~~l~~~m~~~-----g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~ 474 (798)
|++++|++.+..+.+. +..........++..|...++++...+....+.+. |..+.. ...++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 7889999888776542 23445667888999999999999887777666544 333222 223333 23233
Q ss_pred CCHH--HHHHHHhhcCC---CCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q 003746 475 GCVD--NALEVFHGTEE---KGV-------SSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE-----ITFVGVLGAC 537 (798)
Q Consensus 475 g~~~--~A~~~~~~~~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~ 537 (798)
...+ .-..+.+.... .-+ .....|...|...|++.+|.+++.++...-...+. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22333333321 111 13456788899999999999999998753222222 2466667889
Q ss_pred HhcCcHHHHHHHHHHHHHh-CCC--cCC--cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 003746 538 RHMGLVDEGHRHFNSMIQE-HRL--EPN--SKHYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHE 612 (798)
Q Consensus 538 ~~~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 612 (798)
...+++.+|..++.++... +.. .|+ ...|.+++..+...+++.+|...|.+. ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 9999999999999987432 111 222 456788899999999999998876664 33444455555
Q ss_pred HHHHHHHHH
Q 003746 613 MGERVGRKL 621 (798)
Q Consensus 613 ~A~~~~~~~ 621 (798)
....++..+
T Consensus 256 ~~~~~L~~~ 264 (445)
T 4b4t_P 256 KWKPVLSHI 264 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.15 E-value=3.7 Score=42.59 Aligned_cols=60 Identities=15% Similarity=-0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003746 598 WGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVR 657 (798)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 657 (798)
...++..+...|+++++...++.++..+|-+...+..|..+|.+.|+..+|.+.|+...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667778889999999999999999999988999999999999999999999887753
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.06 E-value=12 Score=32.88 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 003746 630 GFHVLLSNIHASKGRWDDVLEVRGMM 655 (798)
Q Consensus 630 ~~~~~l~~~~~~~g~~~~a~~~~~~m 655 (798)
..-+.++..|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46677889999999999999998865
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.86 E-value=7.1 Score=34.23 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 529 TFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 529 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
++..+..++...|++.+|...|++.++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344555566666666666666666543
No 256
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.25 E-value=35 Score=31.14 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 003746 409 ETLSLFMEMQH 419 (798)
Q Consensus 409 ~A~~l~~~m~~ 419 (798)
++...+.++..
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.33 E-value=11 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 508 ADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 508 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
.-+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.+..+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 33566667777778899999999999999999999999999999987653 344556777764
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.97 E-value=29 Score=33.24 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHhhcCCHHHHHHHHhcCC-C---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 003746 235 IVLFGRKGNVAEACRLFKEMP-K---KDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDE 294 (798)
Q Consensus 235 i~~y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 294 (798)
+...++.|+.+-+..+++... . +|...++.+..+ +..|+.....++++.+.+.|..++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCC
Confidence 334445566666666665422 1 233333333333 3445555555666666666665543
No 259
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.27 E-value=93 Score=34.35 Aligned_cols=81 Identities=6% Similarity=0.025 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---CChHHH
Q 003746 334 ALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQH---DQFSET 410 (798)
Q Consensus 334 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~~~~A 410 (798)
....++.-+|+++.|.+.+-+....|.+.+...+.- .|-+.....++..-+.....-+..||..|.+. .++.+|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 455666778999999998877644455554444443 33222111111110011122366788877655 788899
Q ss_pred HHHHHHH
Q 003746 411 LSLFMEM 417 (798)
Q Consensus 411 ~~l~~~m 417 (798)
++.|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 9888766
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.96 E-value=76 Score=33.21 Aligned_cols=179 Identities=8% Similarity=0.036 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHhcC-----CC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh----c
Q 003746 373 CGSVEKARALFDAMI-----EK----DVVSWSTMISGYAQHDQFSETLSLFMEMQHH-GIRPDEATLVSVISACT----H 438 (798)
Q Consensus 373 ~g~~~~A~~~~~~m~-----~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~----~ 438 (798)
.|+++.|.+.+-.+. .. .......++..+...|+++...+.+..+... |..+.. ...+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 367888887765542 12 3455778889999999999998887766543 333322 233443332 2
Q ss_pred ccchhHHHHHHHHHHHc------C-CCC---cHHHHhHHHhhHHhcCCHHHHHHHHhhcCC----C-C----cchHHHHH
Q 003746 439 LVALDQGKWIHAYIRKN------G-LKI---NSILGTTLIDMYMKLGCVDNALEVFHGTEE----K-G----VSSWNALI 499 (798)
Q Consensus 439 ~~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li 499 (798)
....+. +.....+.. | +-. ...+...|...|...|++.+|.+++..+.. . + +..+...+
T Consensus 107 ~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222222 111122221 1 111 234556788999999999999999988752 1 1 44677788
Q ss_pred HHHHHcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 500 IGFAMNGLADKSLEMFSEMKK----SGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 500 ~~~~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
..|...+++.+|..++++... ....|+. ..+...+..+.+.+++.+|.+.|.++..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999998642 2222322 2345556677788999999998888755
No 261
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.47 E-value=44 Score=30.16 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=81.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHhhCCCCCchHHHHHHHHHhhcC
Q 003746 163 DSDVYVNNTLINMYAVCGDLSAARKLFDESPVLDLVSWNSILAGYVNADNVEEAKFIYNKMPERNIIASNSMIVLFGRKG 242 (798)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~y~~~g 242 (798)
.+|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+.+.+..++..+....+..+.+.|
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34555555555555555554444444444555555544555555666665544444455555667777777777777777
Q ss_pred CHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCch
Q 003746 243 NVAEACRLFKEMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVV 310 (798)
Q Consensus 243 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 310 (798)
+.+....+...+..+|...-...+.++.+.|+. ++...+.++... ++...-...+.++...++.
T Consensus 105 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCch
Confidence 765555555656666666556666666666653 344444444432 4444444555555555543
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.33 E-value=18 Score=28.37 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=42.7
Q ss_pred hhHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003746 469 DMYMKLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITF 530 (798)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 530 (798)
..+...|++++|..+.+...-+|++.|-++-. .+.|..+++..-+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567889999998888888888888887754 46777777777777777665 3433333
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.30 E-value=32 Score=41.28 Aligned_cols=164 Identities=9% Similarity=0.045 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccchh
Q 003746 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVALD 443 (798)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 443 (798)
..++..+.+.+..+.+..+..-.+ .+..+--.+...|...|++++|.+.|++.- .|+..+..... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hhc
Confidence 345666777888888777665544 344443455667888999999999997652 12222111000 000
Q ss_pred HHHHHHHHHHHc-C-CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhc----CCCCc----chHHHHHHHHHHcCChHHHHH
Q 003746 444 QGKWIHAYIRKN-G-LKINSILGTTLIDMYMKLGCVDNALEVFHGT----EEKGV----SSWNALIIGFAMNGLADKSLE 513 (798)
Q Consensus 444 ~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~ 513 (798)
. ...+... . ...-..-|..++..+.+.|.++.+.++-+.. ...+. ..|..+..++...|++++|..
T Consensus 884 ---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 ---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0111111 0 1112233555666677777766666554322 22221 258888899999999999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003746 514 MFSEMKKSGVTPNEITFVGVLGACRHMGLVDE 545 (798)
Q Consensus 514 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 545 (798)
.+-.+.....+ ...+..++..++..|..++
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88887765433 3456666666666665443
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.23 E-value=65 Score=33.01 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=11.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 003746 498 LIIGFAMNGLADKSLEMFSEMKK 520 (798)
Q Consensus 498 li~~~~~~g~~~~A~~l~~~m~~ 520 (798)
++..|...|++.+|++++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444555555555555544443
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=73.69 E-value=15 Score=37.95 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCcCCcc
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ----EHRLEPNSK 564 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 564 (798)
.++..+...|++++|+..++.+... -+-+...+..++.++...|+..+|.+.|+...+ +.|++|...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455556666677776666666553 123455666677777777777777777666533 345555543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.34 E-value=76 Score=31.50 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhcc
Q 003746 364 NSMISGYLKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLF----MEMQHHGIRPDEATLVSVISACTHL 439 (798)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll~a~~~~ 439 (798)
.++..-|.+.+++++|.+++.. -...+.+.|+..-|-++- +-+.+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455556677777777766543 233455566665554443 4455677888887777777776655
Q ss_pred cchhH-HHHHHHHHH----HcC--CCCcHHHHhHHHhhHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHHHcCChHHH
Q 003746 440 VALDQ-GKWIHAYIR----KNG--LKINSILGTTLIDMYMKLGCVDNALEVFHGTEEKG-VSSWNALIIGFAMNGLADKS 511 (798)
Q Consensus 440 ~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 511 (798)
..-+. =..+...++ +.| ..-|+.....+...|.+.+++.+|..-|=. ...+ ...+..|+.-+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCcc-
Confidence 43221 122333332 333 345677778888999999999999888742 2222 2455444433333322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 512 LEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 512 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
+|...-.+++ -|.-.+++..|...++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222333 34556788888887766654
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.08 E-value=16 Score=28.81 Aligned_cols=60 Identities=7% Similarity=-0.083 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003746 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174 (798)
Q Consensus 114 ~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (798)
+..+-++.+....+.|++....+.|+||.+.+++..|..+++.+...- .....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 566667777777788888888888888888888888888888775442 333445665553
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.67 E-value=23 Score=29.61 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHH
Q 003746 510 KSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVD 571 (798)
Q Consensus 510 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 571 (798)
+..+-++.+....+-|+.....+.|.+|.+.+++.-|.++|+.+..+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45566667777889999999999999999999999999999998765 4455666777764
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.14 E-value=66 Score=30.72 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEI-TFVGVLGACRHMGLVDEGHRHFNSMIQ 555 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 555 (798)
..+.|..++|++....-++. .|... .-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456666666666655553 33333 334444556666666666666665543
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.27 E-value=46 Score=26.17 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003746 371 LKCGSVEKARALFDAMIEKDVVSWSTMISGYAQHDQFSETLSLFMEMQHHG 421 (798)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 421 (798)
...|++++|..+.+.+..||.+.|-++... +.|..+++..-+.++..+|
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 355666666666666666666666555443 4455555555554554444
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.23 E-value=1.9e+02 Score=33.32 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHhcCCCCcc--hHHHHHHHHHhcCChhHH
Q 003746 573 LGRAGMLKEAEELIESMPMSPDVATWGALLGAC--KKHGDHEMGERVGRKLVELQPDHDG--FHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 573 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a 648 (798)
+.-.|+-+....++..+.-..+..+...+.-++ ...|+.+.+..+.+.+......... .-..++-+|+..|+....
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 334455555555555431112233333333333 3556666666666665543211111 112344456666666555
Q ss_pred HHHHHHHH
Q 003746 649 LEVRGMMV 656 (798)
Q Consensus 649 ~~~~~~m~ 656 (798)
.+++..+.
T Consensus 580 q~LL~~~~ 587 (963)
T 4ady_A 580 KRLLHVAV 587 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555554
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.87 E-value=92 Score=29.50 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=35.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhCCCCCCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHH
Q 003746 102 MMRAYIQRNVPQQAICLYKLMLNNNVGVDNY---TYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVY--VNNTLINMY 176 (798)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y 176 (798)
.+...++.|+.+.+ +.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...
T Consensus 8 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 34444566665433 3344455444432 1112333334445543 334444555443321 112233444
Q ss_pred HhcCChHHHHHHHcc
Q 003746 177 AVCGDLSAARKLFDE 191 (798)
Q Consensus 177 ~~~g~~~~A~~~f~~ 191 (798)
+..|+.+-+..+++.
T Consensus 80 ~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 455555555555554
No 273
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.28 E-value=80 Score=37.87 Aligned_cols=146 Identities=9% Similarity=0.012 Sum_probs=71.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc
Q 003746 497 ALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA 576 (798)
Q Consensus 497 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 576 (798)
.++..+...|.++-|.++..- .+-+...--.+..++...|++++|.++|++.. .|+..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhh----------
Confidence 345556666666655554322 12233332334455666777777777776652 2332221111
Q ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCcc----hHHHHHHHHHhcCChhHHHH
Q 003746 577 GMLKEAEELIESMPMS-PDVATWGALLGACKKHGDHEMGERVGRKLVELQP-DHDG----FHVLLSNIHASKGRWDDVLE 650 (798)
Q Consensus 577 g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~ 650 (798)
....+...+...-... .-..-|.-++..+.+++.++.+.+..+.+++..+ +++. .+..+-+.+...|++++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0111111111111111 1223455566666677777777777777765433 3221 34445555666677777766
Q ss_pred HHHHHHhCC
Q 003746 651 VRGMMVRRG 659 (798)
Q Consensus 651 ~~~~m~~~~ 659 (798)
.+-.+.+..
T Consensus 960 aL~~~pd~~ 968 (1139)
T 4fhn_B 960 ALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHSS
T ss_pred HHHhCCCHH
Confidence 665555433
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.99 E-value=1.1e+02 Score=30.04 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHHH
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQ--FSETLSLFMEMQHHGIRPDEAT 428 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 428 (798)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5677888888999999999999997662 3445556666665433 4566788888887775554433
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.38 E-value=1.2e+02 Score=30.41 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003746 362 SWNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQ--FSETLSLFMEMQHHGIRPDEATLVSVI 433 (798)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll 433 (798)
..+.++.-|...|+.++|.+.++++..+. .+....+..++-+.++ .+...+++..+...|+-+.......+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 35778888889999999999999997663 3445555566655443 456778888888877665444433333
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.92 E-value=12 Score=35.84 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=41.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcc
Q 003746 572 LLGRAGMLKEAEELIESM-PMSP-DVATWGALLGACKKHGDHEMGERVGRKLVELQPDHDG 630 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 630 (798)
.+.+.|.+++|++....- +..| |...-..|+.-++..|+++.|.+-++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456778888887765544 3344 5666667777788888888888888888888887543
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.55 E-value=32 Score=35.91 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003746 565 HYGCMVDLLGRAGMLKEAEELIESM-----PMSPDVATWGALLGACKKHGDHEMGERVGRKLV 622 (798)
Q Consensus 565 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (798)
....+.+.|.+.|++++|.+.+.++ ....-...+-.++..+...+|+..+....+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344455555555555555555444 111112334444455555555555555555543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.14 E-value=53 Score=34.24 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchH----H
Q 003746 494 SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNE--ITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHY----G 567 (798)
Q Consensus 494 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~ 567 (798)
++..+..-|.+.|++++|.+.|.++......+.. ..+..++..+...+++..+..+..++.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556667777777777777777777664333333 256666677777777777777777764432222222211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 003746 568 CMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 568 ~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
+-+-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222344567777777766554
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.06 E-value=85 Score=30.84 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=44.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003746 586 IESMPMSPD--VATWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRG 659 (798)
Q Consensus 586 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 659 (798)
|...+++|. ..+++.-+..+.+++|+..|..+.++++++.|+.. ..+.|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 344466664 44678888889999999999999999999999632 2345777776665443
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=56.76 E-value=38 Score=28.39 Aligned_cols=60 Identities=7% Similarity=-0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003746 114 QAICLYKLMLNNNVGVDNYTYPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLIN 174 (798)
Q Consensus 114 ~A~~~~~~m~~~g~~~~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (798)
+..+-++.+...++.|++......|++|.+.+|+..|..+++-+...- .+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 566667777778889999999999999999999999999998876543 344556766654
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.48 E-value=1.1e+02 Score=28.20 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=12.2
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCC
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVD 130 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~ 130 (798)
++.|+.+.+..+++.+.+.|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 445555555555555544554443
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.21 E-value=1.1e+02 Score=29.29 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHhcCChHHHHHHHcc
Q 003746 175 MYAVCGDLSAARKLFDE 191 (798)
Q Consensus 175 ~y~~~g~~~~A~~~f~~ 191 (798)
..+..|+.+-+..+++.
T Consensus 101 ~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445555555555444
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.02 E-value=1.4e+02 Score=27.09 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCccceEEECCE
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVVKIPGCSMIEANGI 674 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 674 (798)
.|-..+..| ..++...+..+|..|.. +.-..+.+|...+..+...|++.+|.++++.-++++-+
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~------------- 147 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR------------- 147 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------
Confidence 455555544 23446688899988874 67777889999999999999999999999988776653
Q ss_pred EEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCC
Q 003746 675 IHEFLAGDRTHPQINEIDNMLDEMAKKLKLEGYA 708 (798)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 708 (798)
| .+.+.....+....|...+++
T Consensus 148 -----------P-~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 148 -----------P-YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp -----------S-HHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------c-HHHHHHHHHHHHHHHHhcCCC
Confidence 2 244556667778888887763
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.85 E-value=91 Score=28.59 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHHHccCC
Q 003746 172 LINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~ 193 (798)
.+...++.|+.+-+..+++...
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 4455566666666666665544
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.45 E-value=1.4e+02 Score=32.97 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=13.9
Q ss_pred HhcCChhHHHHHHHHH
Q 003746 640 ASKGRWDDVLEVRGMM 655 (798)
Q Consensus 640 ~~~g~~~~a~~~~~~m 655 (798)
.+.|+|++|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 7899999999888764
No 286
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.47 E-value=2.5e+02 Score=28.76 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=10.1
Q ss_pred HHHHHhcCChHHHHHHHcc
Q 003746 173 INMYAVCGDLSAARKLFDE 191 (798)
Q Consensus 173 i~~y~~~g~~~~A~~~f~~ 191 (798)
+...++.|+.+....+++.
T Consensus 117 L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455666655555554
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.07 E-value=2e+02 Score=29.59 Aligned_cols=194 Identities=11% Similarity=0.007 Sum_probs=97.9
Q ss_pred HHHHHHHhCCCCchhh--hhhccccccCccCCCChhHHHHhhhcCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 003746 49 ILSQMILTGLIADTFA--ASRLIKFSTDLLPFIEMSYSFKIFAFLESP---NGFIFNTMMRAYIQRNVPQQAICLYKLML 123 (798)
Q Consensus 49 ~~~~~~~~g~~~~~~~--~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (798)
+...+++.|..++... ..+.+. .-+ ..|+.+-++.+++.-... +..-++.|..+ ++.|+.+-+. .+.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~--~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~----~Ll 100 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLH--MAA-RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA-ARIGHTNMVK----LLL 100 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHH--HHH-HHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH-HHHTCHHHHH----HHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHH--HHH-HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH-HHCCCHHHHH----HHH
Confidence 4555666776654322 223333 334 678888888888765443 33334444433 4556654333 334
Q ss_pred hCCCCCCccc--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHHccCCCCCcc-
Q 003746 124 NNNVGVDNYT--YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDV--YVNNTLINMYAVCGDLSAARKLFDESPVLDLV- 198 (798)
Q Consensus 124 ~~g~~~~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~- 198 (798)
+.|..++... -.+.+...+..|+.+..+.++ +.|...+. ....+.+...++.|+.+-+..+++....++..
T Consensus 101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 176 (437)
T 1n11_A 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176 (437)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 4455544332 122334445566765554444 44433221 11223455667788888888888765433321
Q ss_pred -hHHHHHHHHHhCCCHHHHHHHHhhCCCCCch--HHHHHHHHHhhcCCHHHHHHHHhcC
Q 003746 199 -SWNSILAGYVNADNVEEAKFIYNKMPERNII--ASNSMIVLFGRKGNVAEACRLFKEM 254 (798)
Q Consensus 199 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~ 254 (798)
.-.+.+...+..|+.+-+..+++.-...+.. ...+.+...++.|+.+-+..+++.-
T Consensus 177 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 1112344455666666555555543322211 1122344455667777666666543
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.14 E-value=1.2e+02 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=24.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 003746 141 SALRLSVFEGKLIHDHVLKAGFDSDVYVNNTLINMYAVCGDLSAARKLFDESP 193 (798)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 193 (798)
.+..|+.+..+. +++.|..++..-..+.+...+..|+.+-+..+++...
T Consensus 38 A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 86 (285)
T 3kea_A 38 AIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGL 86 (285)
T ss_dssp HHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred HHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 344555544333 3344544333323344455556666666666665543
No 289
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.46 E-value=1.1e+02 Score=27.59 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH
Q 003746 579 LKEAEELIESMPMSPDVA-------TWGALLGACKKHGDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 579 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 648 (798)
++.|+.+++.+.-.-|.. .=-..+..|.+.|.+++|.+++++.++-.|++...-.-|..+-.+..-....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 566777777774333311 1123456789999999999999999988877766666665554444333333
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.35 E-value=1.1e+02 Score=27.69 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhCCcc-chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHH
Q 003746 310 VKAGTSVHALAVKIGIEC-YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMI 367 (798)
Q Consensus 310 ~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 367 (798)
......++..|...|+.. -...|-+....+-..|++.+|.++|+.|..........|.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 456666677776666543 3455677777777777777777777776555444444333
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.22 E-value=35 Score=32.32 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=60.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCchh-------HHHHHHHHh--ccCchHHHHHHHHHHHHhCC---------ccch
Q 003746 268 CYEQNEMYEEALVLFMNMIDHRVMVDEVV-------VVSVLSACA--NLTVVKAGTSVHALAVKIGI---------ECYI 329 (798)
Q Consensus 268 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~---------~~~~ 329 (798)
..++.|+.+....+++.+.+.|..++... .+.+..|+. ..|+.+.++.++..-...+. ....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34566777777777776666665555332 233333332 45666666666555433111 0000
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHH
Q 003746 330 NLQNALIHMYSSCGEITTAEKLFDAGHNLDLIS----------------WNSMISGYLKCGSVEKARALFD 384 (798)
Q Consensus 330 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 384 (798)
......+...+..|..+-+.-+++.+..++... -.+.+...+..|+.+-+..+++
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 011223444556677777777777655544332 1233333445666666666666
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.20 E-value=1.5e+02 Score=25.47 Aligned_cols=50 Identities=6% Similarity=-0.059 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 612 EMGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 612 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
+.+..+|..+.. +.-..+.+|...+..+...|++.+|.++++.-++++-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 447888888875 56677788999999999999999999999987776553
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.82 E-value=89 Score=33.13 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHH-HHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 003746 564 KHYGCMVDLLGRAGMLKEAEELIESMPMSPD------VATW-GALLGACKKHGDHEMGERVGRKLVELQP 626 (798)
Q Consensus 564 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p 626 (798)
..+|+++..|...+.++.|..++.+..++.. ...| ..++..+...+++.+|.+.+..++..-|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555555432211 0111 1223334445555555555555554433
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.50 E-value=1.7e+02 Score=25.47 Aligned_cols=49 Identities=4% Similarity=-0.060 Sum_probs=40.2
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 003746 613 MGERVGRKLVE--LQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGVV 661 (798)
Q Consensus 613 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 661 (798)
.+..+|..|.. +.-..+.+|...+..+...|++.+|.++++.-++++-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 36678888764 66777888999999999999999999999988876654
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.47 E-value=1.6e+02 Score=24.34 Aligned_cols=64 Identities=11% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCH
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQ--FSETLSLFMEMQHHGIRPDE 426 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 426 (798)
.+.++.-|...|+.++|.+.++++..+. .+....+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3455666667788888888888776552 2344455555555432 35677777777777654433
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.75 E-value=45 Score=27.86 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=8.6
Q ss_pred HHHHHHhCCCHHHHHHHHhhC
Q 003746 203 ILAGYVNADNVEEAKFIYNKM 223 (798)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (798)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333444444444444444443
No 297
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.97 E-value=2.2e+02 Score=25.77 Aligned_cols=14 Identities=0% Similarity=-0.418 Sum_probs=6.8
Q ss_pred CCCChhHHHHhhhc
Q 003746 77 PFIEMSYSFKIFAF 90 (798)
Q Consensus 77 ~~g~~~~a~~~f~~ 90 (798)
..|+++....+++.
T Consensus 15 ~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 15 YSGKLDELKERILA 28 (231)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHh
Confidence 34555555555443
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.62 E-value=1.5e+02 Score=25.38 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 003746 363 WNSMISGYLKCGSVEKARALFDAMIEKD---VVSWSTMISGYAQHDQ--FSETLSLFMEMQHHGIRPD 425 (798)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd 425 (798)
.+.++.-|...|+.++|.+.++++..+. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3455566667777888888777776552 2344455555555322 4556777777776665443
No 299
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=37.03 E-value=11 Score=23.61 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=8.7
Q ss_pred CCcccCCCCC
Q 003746 788 KHGSCSCMDF 797 (798)
Q Consensus 788 ~~g~csc~~~ 797 (798)
.+|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999976
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.50 E-value=2.6e+02 Score=25.43 Aligned_cols=13 Identities=0% Similarity=-0.069 Sum_probs=6.0
Q ss_pred CCCChhHHHHhhh
Q 003746 77 PFIEMSYSFKIFA 89 (798)
Q Consensus 77 ~~g~~~~a~~~f~ 89 (798)
..|+.+-...+++
T Consensus 18 ~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 18 VQGNLPAVHRLVN 30 (241)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3455544444443
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.16 E-value=61 Score=25.38 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCchhhhhhccccccCccCCCChhHHHHhhhcCCCCCcchHHHHHHHHHcCCCchHHHH
Q 003746 48 QILSQMILTGLIADTFAASRLIKFSTDLLPFIEMSYSFKIFAFLESPNGFIFNTMMRAYIQRNVPQQAIC 117 (798)
Q Consensus 48 ~~~~~~~~~g~~~~~~~~~~l~~~~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 117 (798)
.|...++..|+...... ..+-. .. +..+.+.|+++++.++.+...+|..++.++...|+...|..
T Consensus 25 ~vld~L~~~~vlt~~~~-e~I~~---~~-~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMI-EDIQR---AG-SGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSSCHHHH-HHHHT---ST-TCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHH-HHHHh---cc-CCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 36667777775533222 22221 00 12578899999999999999999999999977777665543
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.99 E-value=1.6e+02 Score=25.34 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCcc-chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH
Q 003746 313 GTSVHALAVKIGIEC-YINLQNALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMIS 368 (798)
Q Consensus 313 a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 368 (798)
...++..+...|+.. -...|.+....+-..|++.+|.++|+.|..........|..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 455555555555432 34456666677777777777777777666555544444443
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.58 E-value=3.8e+02 Score=27.22 Aligned_cols=281 Identities=11% Similarity=0.086 Sum_probs=138.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCHHHH-----
Q 003746 332 QNALIHMYSSCGEITTAEKLFDAGHN--------LDLISWNSMISGYLKCG-SVEKARALFDAMIE---KDVVSW----- 394 (798)
Q Consensus 332 ~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~----- 394 (798)
...|...|.+.|+.++..+++....+ ........++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888865322 11223455566555432 23333333332221 011122
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHhcccchhHHHHHHHHHHHc--CCCCcHHHHhH
Q 003746 395 -STMISGYAQHDQFSETLSLFMEMQHHGIRPDEA-----TLVSVISACTHLVALDQGKWIHAYIRKN--GLKINSILGTT 466 (798)
Q Consensus 395 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-----t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 466 (798)
.-++..|...|++.+|++++.++.+.=-+.|.. .+..-+..+...+++..++..+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 257888999999999999998887642222221 2333344556666777776666655432 22222222211
Q ss_pred H----HhhHH-hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC---HHHHHHHH
Q 003746 467 L----IDMYM-KLGCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLEMFSEMKK----SGVTPN---EITFVGVL 534 (798)
Q Consensus 467 l----i~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~---~~t~~~ll 534 (798)
+ .-++. ..+++..|... |-+..+ .| .|. ...|..+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~-------------------------------F~eaf~~f~~~~-~~~~~~~lkYlvL~ 229 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSY-------------------------------FYEAFEGFDSVD-SVKALTSLKYMLLC 229 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHH-------------------------------HHHHHHHHTTTC-HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHH-------------------------------HHHHHhcccccc-cHHHHHHHHHHHHH
Confidence 1 11222 34444444444 333321 11 111 11232222
Q ss_pred HHHHhcCcHHHHHHHH-HHHHHhCCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH---HHHHHHHHHc
Q 003746 535 GACRHMGLVDEGHRHF-NSMIQEHRLEPNSKHYGCMVDLLGRAGMLKEAEELIESMP--MSPDVATW---GALLGACKKH 608 (798)
Q Consensus 535 ~a~~~~g~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~---~~l~~~~~~~ 608 (798)
+... ++..+-..++ ......+ ..|....+..++.+| +.|++.+..++++... +..|.... ..|....+
T Consensus 230 -aLl~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir-- 303 (394)
T 3txn_A 230 -KIML-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML-- 303 (394)
T ss_dssp -HHHT-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--
T ss_pred -HHHc-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--
Confidence 2222 2211222222 1211222 345555555666654 5668888888877762 34455431 11111111
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003746 609 GDHEMGERVGRKLVELQPDHDGFHVLLSNIHASKGRWDDVLEVRGMMVRRGV 660 (798)
Q Consensus 609 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 660 (798)
...+.++ ..|-.......++..+.- ..+++....-.|...|.
T Consensus 304 ------~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 ------EQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp ------HHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred ------HHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 1122222 357666666667655432 67899999999987765
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.16 E-value=1.5e+02 Score=29.60 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=22.9
Q ss_pred HHHHhCC--CHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHh
Q 003746 337 HMYSSCG--EITTAEKLFDAGHNLDLI---SWNSMISGYLKCGSVEKARALFDA 385 (798)
Q Consensus 337 ~~y~~~g--~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 385 (798)
...+..| ..+-+..+++.+..++.. -++. +...+..|+.+-+..+++.
T Consensus 143 ~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETP-LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhc
Confidence 3344455 555555555554443322 1222 2233355666666555554
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.82 E-value=38 Score=32.10 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=15.9
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCc
Q 003746 107 IQRNVPQQAICLYKLMLNNNVGVDN 131 (798)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~~~~ 131 (798)
++.|+.+....+++.+.+.|..++.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcch
Confidence 4566777766667666666655553
No 306
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.22 E-value=80 Score=30.01 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------CchhHHHHHHHHh--ccCchHHHHHHHHHHHHhC----
Q 003746 258 DLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMV-------DEVVVVSVLSACA--NLTVVKAGTSVHALAVKIG---- 324 (798)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g---- 324 (798)
|..-++.|..+ ++.|+.+....+++.....+... |..-.+.+..++. +.|+.+.++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 33344444443 45677777777776666555332 2233344444443 3466666655555432211
Q ss_pred -----Cc-cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Q 003746 325 -----IE-CYINLQNALIHMYSSCGEITTAEKLFDAGHNLD 359 (798)
Q Consensus 325 -----~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 359 (798)
.. .|.. ....+...+..|+.+-+.-+++.+..++
T Consensus 89 ~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 89 FVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp HHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 00 1111 1223334455677777777777655443
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.91 E-value=1e+02 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=20.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 003746 561 PNSKHYGCMVDLLGRAGMLKEAEELIESM 589 (798)
Q Consensus 561 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 589 (798)
++.......+..+.+.|+-++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34555566678888888888888887554
No 308
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=32.03 E-value=35 Score=26.05 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.0
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCCCccc
Q 003746 686 PQINEIDNMLDEMAKKLKLEGYAPDTLEV 714 (798)
Q Consensus 686 ~~~~~~~~~l~~l~~~~~~~g~~~d~~~~ 714 (798)
.+..+|+..+++...+++..||.||-..+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 34567888899999999999999997654
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.54 E-value=40 Score=29.12 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=9.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhC
Q 003746 203 ILAGYVNADNVEEAKFIYNKM 223 (798)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (798)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.25 E-value=2.9e+02 Score=24.86 Aligned_cols=16 Identities=6% Similarity=-0.136 Sum_probs=7.2
Q ss_pred HHhccCchHHHHHHHH
Q 003746 303 ACANLTVVKAGTSVHA 318 (798)
Q Consensus 303 a~~~~~~~~~a~~i~~ 318 (798)
.....++.+.++.+.+
T Consensus 216 ~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHH
Confidence 3344455554444443
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.90 E-value=3.4e+02 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=8.6
Q ss_pred ccchhHHHHHHHHHHhCCC
Q 003746 326 ECYINLQNALIHMYSSCGE 344 (798)
Q Consensus 326 ~~~~~~~~~li~~y~~~g~ 344 (798)
.++..+....+..+.+.|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4455555555555554444
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.46 E-value=1.7e+02 Score=29.22 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHhCCChHHHH
Q 003746 336 IHMYSSCGEITTAEKLFDAGHNLDLI---SWNSMISGYLKCGSVEKARALFDAMIEKDV-VSWSTMISGYAQHDQFSETL 411 (798)
Q Consensus 336 i~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~ 411 (798)
+...+..|+.+....+++.+..++.. -++ .+...+..|+.+-+..+++.-...+. .-++ .+..-+..|+.+-+.
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~ 101 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVV 101 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHH
Confidence 33344456666666666554433321 122 22333355666666555554432221 1111 222233455555555
Q ss_pred HHHHHHHHcCCC
Q 003746 412 SLFMEMQHHGIR 423 (798)
Q Consensus 412 ~l~~~m~~~g~~ 423 (798)
.+++.....|..
T Consensus 102 ~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 102 ALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHhccccCCC
Confidence 555544333433
No 313
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.98 E-value=11 Score=20.35 Aligned_cols=13 Identities=38% Similarity=1.180 Sum_probs=9.4
Q ss_pred ccCCccc--CCCCCC
Q 003746 786 HFKHGSC--SCMDFW 798 (798)
Q Consensus 786 ~~~~g~c--sc~~~w 798 (798)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5788888 577666
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.83 E-value=2.2e+02 Score=26.57 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=17.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 003746 397 MISGYAQHDQFSETLSLFMEMQH 419 (798)
Q Consensus 397 li~~~~~~g~~~~A~~l~~~m~~ 419 (798)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677788888888888887654
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.52 E-value=3.6e+02 Score=31.39 Aligned_cols=33 Identities=6% Similarity=-0.158 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCc
Q 003746 597 TWGALLGACKKHGDHEMGERVGRKLVE-LQPDHD 629 (798)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 629 (798)
-|..++..+.+++-++.+.++.+.+++ ..++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 455566666677777777777777775 344443
No 316
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.31 E-value=6.1e+02 Score=27.61 Aligned_cols=401 Identities=8% Similarity=-0.053 Sum_probs=204.0
Q ss_pred hcCChHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCHHHHHHHHhhCCCCC--chHHHHHHHHHhhcCCHHHHHHHHh
Q 003746 178 VCGDLSAARKLFDESPVLDLV---SWNSILAGYVNADNVEEAKFIYNKMPERN--IIASNSMIVLFGRKGNVAEACRLFK 252 (798)
Q Consensus 178 ~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~y~~~g~~~~A~~~f~ 252 (798)
+.|+++.+.++...+..-... .|..+...+ ......+....+.+-...- ...-+.-+..+++.+++.....++.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 456666666666655322121 233322222 1224555555555554321 1233445566777888888888777
Q ss_pred cCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCchhHHHHHHHHhccCchHHHHHHHHHHHHhCCccchhHH
Q 003746 253 EMPKKDLVSWSALISCYEQNEMYEEALVLFMNMIDHRVMVDEVVVVSVLSACANLTVVKAGTSVHALAVKIGIECYINLQ 332 (798)
Q Consensus 253 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 332 (798)
. +..+...-.....+....|+..+|....+.+-..|-. .......++.. ..+.|.-....++
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~----------------~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSV----------------WRASGKQDPLAYL 158 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHH----------------HHHTTCSCHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHH----------------HHHCCCCCHHHHH
Confidence 6 3334555556667788889888888877777665522 22233333333 3333332222222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCChHH
Q 003746 333 NALIHMYSSCGEITTAEKLFDAGHNLDLISWNSMISGYLKCGSVEKARALFDAMIEKDVV---SWSTMISGYAQHDQFSE 409 (798)
Q Consensus 333 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~ 409 (798)
. -++.....|+...|..+..............++..+.+-..+ ....... .++.. ....-+.-+.+ .+.+.
T Consensus 159 ~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 159 E-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp H-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred H-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHH
Confidence 2 235556677777777776655322222223333333222222 2232222 22211 11112223333 37889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH----HHhcccchhHHHHHHHHHHHcCCCCcHHHHhHHHhhHHhcCCHHHHHHHHh
Q 003746 410 TLSLFMEMQHHGIRPDEATLVSVIS----ACTHLVALDQGKWIHAYIRKNGLKINSILGTTLIDMYMKLGCVDNALEVFH 485 (798)
Q Consensus 410 A~~l~~~m~~~g~~pd~~t~~~ll~----a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 485 (798)
|..+|......+ ..+......+-. .....+...++...+........ +.....-.+....+.|+++.|...|+
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999998886543 223333222222 23333424445555555444332 22233334445567899999999999
Q ss_pred hcCCCCc--c-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCC
Q 003746 486 GTEEKGV--S-SWNALIIGFAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPN 562 (798)
Q Consensus 486 ~~~~~~~--~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 562 (798)
.|..... . ..-=+..++...|+.++|..+|+++... . +|-.++. ..+.|..-. . ......+.
T Consensus 310 ~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~-------~-~~~~~~~~ 374 (618)
T 1qsa_A 310 RLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYE-------L-KIDKAPQN 374 (618)
T ss_dssp HSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCC-------C-CCCCCCSC
T ss_pred HccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCC-------C-CCCCCChh
Confidence 9986431 1 1222445677889999999999998752 2 3444432 222232000 0 00001110
Q ss_pred -cc-----hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003746 563 -SK-----HYGCMVDLLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKL 621 (798)
Q Consensus 563 -~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (798)
.. .-..-+..+...|...+|...+.......+......+.......|..+.++....+.
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00 011234557788888888877666522234443445555556778888777666543
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.29 E-value=1.9e+02 Score=26.37 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCc---chHHHHHHHHHhCCCHHHHHHHHhh
Q 003746 172 LINMYAVCGDLSAARKLFDESPVLDL---VSWNSILAGYVNADNVEEAKFIYNK 222 (798)
Q Consensus 172 li~~y~~~g~~~~A~~~f~~~~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~ 222 (798)
.+...+..|+.+-...+++.....+. .-+ +.+...++.|+.+-+..+++.
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCC-CHHHHHHHhCCHHHHHHHHhC
Confidence 34555667777777766665433222 112 223333445555555444443
No 318
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.60 E-value=56 Score=30.77 Aligned_cols=54 Identities=13% Similarity=-0.041 Sum_probs=28.5
Q ss_pred HHHcCCCchHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHhc--cCChHHHHHHHHHHH
Q 003746 105 AYIQRNVPQQAICLYKLMLNNNVGVDN-------YTYPLLAQASAL--RLSVFEGKLIHDHVL 158 (798)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~t~~~ll~a~~~--~~~~~~a~~~~~~~~ 158 (798)
..++.|+.+.+..+++.+...|..++. .-.+.|..|+.. .|+.+..+.+++.-.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 345667777776777777666665543 223333333322 255555555554433
No 319
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.22 E-value=1.1e+02 Score=32.36 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003746 595 VATWGALLGACKKHGDHEMGERVGRKLVELQPDH-------DGFHVLLSNIHASKGRWDDVLEVRGMMVRR 658 (798)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 658 (798)
...|+.++..|...+.++.|..+..+.. .|.. ..+++.+|.++.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5689999999999999999999999985 4432 345677899999999999999998877653
No 320
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.65 E-value=4.1e+02 Score=25.09 Aligned_cols=119 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--H
Q 003746 94 PNGFIFNTMMRAYIQRNVPQQAICLYKLMLNNNVGVDNYT--YPLLAQASALRLSVFEGKLIHDHVLKAGFDSDVYV--N 169 (798)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~ 169 (798)
+|..-++.|..+ +..|+.+- ++.+.+.|..++... -.+.|...+..|+.+.+ +.+++.|..++... .
T Consensus 55 ~~~~g~t~L~~A-a~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g 125 (285)
T 3d9h_A 55 DAVSDWSPMHEA-AIHGHQLS----LRNLISQGWAVNIITADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADW 125 (285)
T ss_dssp SSCCSCCHHHHH-HHTTCHHH----HHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTC
T ss_pred CCccCCCHHHHH-HHcCCHHH----HHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCC
Confidence 344445555444 45566543 344445565554332 11233333455665433 34445564443211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCCcch-HHHHHHHHHhCCCHHHHHHHHh
Q 003746 170 NTLINMYAVCGDLSAARKLFDESPVLDLVS-WNSILAGYVNADNVEEAKFIYN 221 (798)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~-~~~li~~~~~~g~~~~A~~~~~ 221 (798)
.+-+...+..|+.+-+..+++.....+... -.+.+...++.|+.+-+..+++
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 178 (285)
T 3d9h_A 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA 178 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 123344456677776666666544322111 1222333344455544444443
No 321
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.04 E-value=1.5e+02 Score=29.03 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCcCCcchHHHHHHHHHhc-----
Q 003746 502 FAMNGLADKSLEMFSEMKKSGVTPNEITFVGVLGACRHMGLVDEGHRHFNSMIQEHRLEPNSKHYGCMVDLLGRA----- 576 (798)
Q Consensus 502 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 576 (798)
+...|++++|+..|+... +...+.......+.+++.++.....+ +....-++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icre--------Yilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICRE--------YIVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcccCC
Q ss_pred -CCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003746 577 -GMLKEAEELIESM---PMSP--DVATWGALLGACKKHGDHEMGERVGRKLVELQPD 627 (798)
Q Consensus 577 -g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 627 (798)
.+.....++---+ +++| -..+++.-+..+.+++|+..|..+.++++++.|+
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.93 E-value=2.8e+02 Score=25.06 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=21.8
Q ss_pred HHHHHHCCCCCCchh--HHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003746 282 FMNMIDHRVMVDEVV--VVSVLSACANLTVVKAGTSVHALAVKIGI 325 (798)
Q Consensus 282 ~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 325 (798)
++.+.+.|..++... -.+.|...+..++.+.+..+.+.+.+.|.
T Consensus 137 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 137 VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 333444555443221 11233444455666666666666666654
No 323
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.43 E-value=3.6e+02 Score=23.65 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--c---------------CCCCc-chHH
Q 003746 572 LLGRAGMLKEAEELIESMPMSPDVATWGALLGACKKHGDHEMGERVGRKLVE--L---------------QPDHD-GFHV 633 (798)
Q Consensus 572 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~p~~~-~~~~ 633 (798)
++--.|.+..++-++.... .....-|.+| +|.+.+++..|+..++.+++ . +|.|. .++.
T Consensus 42 ~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 3445677777777776652 1122223332 45677888888888888873 2 23333 3566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 003746 634 LLSNIHASKGRWDDVLEVRGMMV 656 (798)
Q Consensus 634 ~l~~~~~~~g~~~~a~~~~~~m~ 656 (798)
.++.++...|..+||.+.+..--
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhhc
Confidence 78999999999999999987543
No 324
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.97 E-value=1.8e+02 Score=28.85 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCC--
Q 003746 562 NSKHYGCMVDLLGRAGMLKEAEELIESM-------P-MSPDVATWGALLGACKKHGDHEMGERVGRKLVE-----LQP-- 626 (798)
Q Consensus 562 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p-- 626 (798)
.+.-|..+...|.|.+++.||++.+-+. . ...|..+|..++.. |-++.=.+++ .+|
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI---------AneliP~~~k~a~~~~~~~G 365 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI---------ANDLIPNILKDAVAKADPSG 365 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH---------HHTHHHHHHHHHHTCC----
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---------HHHHhhHHHHhhhhccCCCC
Confidence 4667888999999999999999887665 1 12355566555422 2222222222 222
Q ss_pred -------CCcchHHHHHHHHHhcCChhHH
Q 003746 627 -------DHDGFHVLLSNIHASKGRWDDV 648 (798)
Q Consensus 627 -------~~~~~~~~l~~~~~~~g~~~~a 648 (798)
+|+.++..|...|-...+|||.
T Consensus 366 ~~~~siL~DpecfA~LLrFYDgIC~WEEG 394 (472)
T 3re2_A 366 TGSTNLTSDPKFFALVLQFYDGICLWEEG 394 (472)
T ss_dssp ----CGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhccChHHHHHHHHHhhcceecccC
Confidence 3567777787777776667663
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.73 E-value=3.9e+02 Score=24.05 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=29.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 003746 402 AQHDQFSETLSLFMEMQHHGIRPDEATLVSVISACTHLVA 441 (798)
Q Consensus 402 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 441 (798)
.+..+++.|+-.+-+|.+.| .|..+.-..++.+.-..|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 35588999999999999999 7776666666666655553
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.93 E-value=5.6e+02 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=11.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC
Q 003746 367 ISGYLKCGSVEKARALFDAMIEK 389 (798)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~m~~~ 389 (798)
+.-|...|+.++|...++++..|
T Consensus 18 l~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHHcCCc
Confidence 33333555555555555555433
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.83 E-value=3.4e+02 Score=26.88 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 003746 245 AEACRLFKEMPKKDLVSWSALISCYE 270 (798)
Q Consensus 245 ~~A~~~f~~~~~~~~~~~~~li~~~~ 270 (798)
+.+..++..+.+.+.++-..+..|+.
T Consensus 63 e~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 63 EHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 33444555555556666666666553
No 328
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.71 E-value=34 Score=28.64 Aligned_cols=41 Identities=7% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCcEEEE----cccccCcchhhHHHHHhhhcCceEEEecCCcccccCCcccC
Q 003746 745 PPNPIRIM----KNLRICNDCHTAAKFISRAFDREIVVRDRHRFHHFKHGSCS 793 (798)
Q Consensus 745 ~~~~~~~~----~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 793 (798)
....+||+ ++.++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 43 ~~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 43 ASSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CCcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 35567775 467788777 455554555788999999999874
No 329
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.47 E-value=1.1e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChHHHHH
Q 003746 475 GCVDNALEVFHGTEEKGVSSWNALIIGFAMNGLADKSLE 513 (798)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 513 (798)
...+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468899999999999999999999999877777655543
No 330
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=21.25 E-value=29 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=17.2
Q ss_pred eEEEecCCcccccCCcccCCC
Q 003746 775 EIVVRDRHRFHHFKHGSCSCM 795 (798)
Q Consensus 775 ~~~~~~~~~~h~~~~g~csc~ 795 (798)
.|=+.|....|+|+||+-+-+
T Consensus 9 ~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 9 TYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEBTTSCEEEEETTSCEEEE
T ss_pred eEecCCCcEEEEEcCCceehh
Confidence 466889999999999986543
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.58 E-value=3.2e+02 Score=24.54 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=5.7
Q ss_pred hcCCHHHHHHHHH
Q 003746 372 KCGSVEKARALFD 384 (798)
Q Consensus 372 ~~g~~~~A~~~~~ 384 (798)
+.|+.+-+.-+++
T Consensus 181 ~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 181 DEERVEEAKFLVT 193 (231)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 4444444444443
Done!