Your job contains 1 sequence.
>003747
MPLWAAFGDSISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWD
KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVD
LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML
YQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSGIGSVIEPLSAVPL
NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS
PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN
TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG
GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI
GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY
SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE
INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD
AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ
TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV
VQVGNMKWIMKFTDIVTY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003747
(798 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|BA_4794 - symbol:BA_4794 "MutS2 family protein" ... 518 9.2e-64 4
UNIPROTKB|Q720J7 - symbol:mutS2 "MutS2 protein" species:2... 541 5.8e-57 3
UNIPROTKB|A8HMH7 - symbol:CHLREDRAFT_146712 "Predicted pr... 471 2.4e-54 3
UNIPROTKB|Q76DY7 - symbol:mutS2 "MutS2 protein" species:2... 471 3.0e-53 4
UNIPROTKB|Q3ABU1 - symbol:mutS2 "MutS2 protein" species:2... 465 1.2e-47 3
TIGR_CMR|CHY_1564 - symbol:CHY_1564 "DNA mismatch repair ... 465 1.2e-47 3
UNIPROTKB|Q81YJ6 - symbol:BAS3289 "Putative MutS family p... 452 3.9e-47 3
TIGR_CMR|BA_3547 - symbol:BA_3547 "MutS family protein, p... 452 3.9e-47 3
TIGR_CMR|GSU_0547 - symbol:GSU_0547 "MutS2 family protein... 440 2.7e-44 3
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 259 9.0e-21 2
TAIR|locus:2087193 - symbol:MSH1 "AT3G24320" species:3702... 281 1.1e-20 1
TIGR_CMR|CJE_1196 - symbol:CJE_1196 "DNA mismatch repair ... 269 1.0e-19 1
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 282 2.2e-19 2
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 215 2.3e-19 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 262 4.5e-19 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 264 5.4e-19 1
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 263 5.7e-19 1
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 226 8.3e-19 2
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 226 8.3e-19 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 247 1.4e-18 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 256 2.5e-18 2
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 204 3.4e-18 2
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 260 4.1e-18 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 251 4.8e-18 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 257 4.8e-18 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 268 5.0e-18 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 268 5.0e-18 2
UNIPROTKB|F1N8B7 - symbol:F1N8B7 "Uncharacterized protein... 252 8.4e-18 1
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 257 1.0e-17 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 264 1.1e-17 2
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 251 1.2e-17 1
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 260 1.4e-17 3
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 250 1.8e-17 2
UNIPROTKB|Q0JBW2 - symbol:Os04g0507000 "Os04g0507000 prot... 251 1.9e-17 1
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 246 4.3e-17 1
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 234 4.6e-17 2
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 243 1.1e-16 1
UNIPROTKB|E9PGY4 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 216 1.4e-16 1
UNIPROTKB|H0YF11 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 216 1.4e-16 1
UNIPROTKB|Q9UFG2 - symbol:DKFZp434C1615 "Putative unchara... 216 1.4e-16 1
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 230 1.4e-16 2
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 241 1.5e-16 1
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 241 1.8e-16 1
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 238 3.1e-16 1
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 233 5.6e-16 1
UNIPROTKB|A2BEX4 - symbol:MSH5-SAPCD1 "MutS protein homol... 230 7.9e-16 1
UNIPROTKB|A2ABF0 - symbol:MSH5 "cDNA FLJ39914 fis, clone ... 230 8.4e-16 1
UNIPROTKB|B4DZX3 - symbol:MSH5 "cDNA FLJ54211, highly sim... 230 9.5e-16 1
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 232 1.5e-15 1
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 232 1.5e-15 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 237 1.6e-15 2
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 225 2.1e-15 1
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 237 2.5e-15 3
UNIPROTKB|Q5BDA1 - symbol:AN1479.2 "DNA-binding protein o... 237 3.3e-15 2
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 229 3.4e-15 1
DICTYBASE|DDB_G0283957 - symbol:msh4 "mutS homolog" speci... 229 4.0e-15 1
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 225 4.1e-15 1
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 228 4.4e-15 1
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 235 5.4e-15 3
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 229 5.6e-15 1
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 231 5.6e-15 2
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 227 5.8e-15 1
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 232 5.8e-15 2
UNIPROTKB|A2BEX2 - symbol:MSH5 "MutS protein homolog 5" s... 222 6.0e-15 1
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 235 6.3e-15 3
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 227 6.4e-15 1
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 228 6.7e-15 1
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 229 7.6e-15 2
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 234 9.3e-15 2
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 224 1.1e-14 1
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 229 1.2e-14 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 233 1.3e-14 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 217 1.4e-14 4
UNIPROTKB|A3KGM9 - symbol:MSH5 "MutS protein homolog 5" s... 216 1.5e-14 1
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 228 2.0e-14 3
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 235 2.3e-14 3
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 232 2.3e-14 2
UNIPROTKB|B0V0L9 - symbol:MSH5 "MutS protein homolog 5" s... 216 2.3e-14 1
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 222 3.2e-14 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 222 3.3e-14 1
UNIPROTKB|O43196 - symbol:MSH5 "MutS protein homolog 5" s... 230 3.6e-14 2
UNIPROTKB|J9NUN0 - symbol:MSH5 "Uncharacterized protein" ... 218 4.3e-14 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 214 4.3e-14 3
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 220 4.9e-14 1
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 216 5.1e-14 3
UNIPROTKB|E1B8D2 - symbol:MSH5 "Uncharacterized protein" ... 217 5.2e-14 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 218 5.3e-14 1
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 221 6.9e-14 2
UNIPROTKB|F1PBG8 - symbol:MSH5 "Uncharacterized protein" ... 218 7.2e-14 2
WB|WBGene00001872 - symbol:him-14 species:6239 "Caenorhab... 198 7.3e-14 3
UNIPROTKB|Q23405 - symbol:him-14 "MutS protein homolog hi... 198 7.3e-14 3
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 229 8.0e-14 2
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 229 8.3e-14 2
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 222 9.0e-14 2
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 221 9.1e-14 2
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 217 9.2e-14 1
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 214 9.8e-14 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 215 1.2e-13 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 214 1.5e-13 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 227 1.5e-13 2
WARNING: Descriptions of 70 database sequences were not reported due to the
limiting value of parameter V = 100.
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 518 (187.4 bits), Expect = 9.2e-64, Sum P(4) = 9.2e-64
Identities = 113/259 (43%), Positives = 162/259 (62%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
G+ + +ATTH+ ELK Y+ + NA +EFD L PT+K+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISK 496
Query: 579 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 638
RLGL V+ AR + +I +I ++E + +EA S LH+ L R
Sbjct: 497 RLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHRELQR 556
Query: 639 TRRKILEHCASQRFRKVQK 657
+ E +R K QK
Sbjct: 557 QIIEFNEE-RDERLLKAQK 574
Score = 104 (41.7 bits), Expect = 9.2e-64, Sum P(4) = 9.2e-64
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP V LN+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A
Sbjct: 225 IEPQVIVELNNALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAF 284
Query: 292 YSLSFGGTSP 301
Y+ T P
Sbjct: 285 YAKRIKATKP 294
Score = 83 (34.3 bits), Expect = 9.2e-64, Sum P(4) = 9.2e-64
Identities = 32/134 (23%), Positives = 66/134 (49%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG--GI--TDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQM--LYQL 183
+ Q+ LY L
Sbjct: 119 LETHVAQIVSLYDL 132
Score = 67 (28.6 bits), Expect = 9.2e-64, Sum P(4) = 9.2e-64
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 732 ASSSVVKDIKQSPRVKRT---ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 788
A+ +VK KQ VK T + GD V V +FG+KG +++ + S E VQ+G +K
Sbjct: 620 AAPELVK--KQKVNVKNTAPKQQLRAGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKM 676
Query: 789 IMK 791
+K
Sbjct: 677 KVK 679
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 541 (195.5 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 127/312 (40%), Positives = 189/312 (60%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
L+ A V DI++ +VITGPNTGGKTI LKT+GL +MA+SGL I + E + +
Sbjct: 312 LDAAKVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAV 371
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
F+ VFADIGDEQS+ QSLSTFS H+ I +I+ +SL+L DE+GAGT+P EG AL +
Sbjct: 372 FEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAI 431
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 572
++L+A G+ + +ATTH+ ELK Y+ NA +EF+ L PTYK+L GVPGRS+
Sbjct: 432 AILDASHAKGASV-VATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSN 490
Query: 573 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 632
A +I+ RLGL ++ AR L SA++N++I +E + EAR L+R
Sbjct: 491 AFDISRRLGLSENIITEARSLVDTESADLNDMISSLEEKRNLAETEYEEARE---LARGA 547
Query: 633 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK-RA 691
NLL+ +K + + Q+ + +++ S+ AA ++V K+ ++A ++H+ R
Sbjct: 548 G-NLLKDLQKEISNYYQQKDKLIEQASEKAA---TIVEKAE-------AEAEEIIHELRT 596
Query: 692 QQLRPSASQSLH 703
QL +A H
Sbjct: 597 MQLNGAAGIKEH 608
Score = 65 (27.9 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP S V LN+E + +A + E +L ++ + ++EI + + D + A+A
Sbjct: 225 IEPQSVVDLNNERKALQAKEKQEIERILAEISASLAAWINEIHHNTFILGRFDFIFAKAR 284
Query: 292 YSLSFGGTSPNI 303
+ + +P++
Sbjct: 285 FGKAMKAVTPHL 296
Score = 58 (25.5 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115
+LE+DK+ ++ FA +SLG +A L + + +L E A I ++ GS +
Sbjct: 8 ILEFDKIKKQLTEFASSSLGEQAILELAPATDFQVVQKTQLETEEGAKI-IRLRGSAPIT 66
Query: 116 -LTGV 119
LT V
Sbjct: 67 GLTDV 71
Score = 42 (19.8 bits), Expect = 2.7e-55, Sum P(3) = 2.7e-55
Identities = 25/113 (22%), Positives = 50/113 (44%)
Query: 96 LLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALA---VVALLQFS 152
L DE E+++ + S+D +G L A+ +RR LR E + + L+
Sbjct: 122 LSDELLVLKEVEEDIAISVDESGKVLDTASEALSTIRRT--LRRTEDRVREKLESYLRDR 179
Query: 153 ETLQLSLRAAIKEDADLYIRFMPLTQMLYQLMDMLIRNEN--NESLFLEVSSI 203
++ A I D Y+ +P+ Q ++ +++ ++LF+E S+
Sbjct: 180 NASKMLSDAVITIRNDRYV--IPVKQEYKGHYGGIVHDQSASGQTLFIEPQSV 230
Score = 40 (19.1 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 238 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGI 280
+PL L + + EED+ +++ E +V LD + L+ I
Sbjct: 116 LPLLGALSDELLVLKEVEEDIAISVDESGKV-LDTASEALSTI 157
>UNIPROTKB|A8HMH7 [details] [associations]
symbol:CHLREDRAFT_146712 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496108
SUPFAM:SSF48334 GO:GO:0000710 GO:GO:0032300 GO:GO:0000404
eggNOG:COG1193 RefSeq:XP_001690145.1 ProteinModelPortal:A8HMH7
EnsemblPlants:EDP09883 GeneID:5715553 KEGG:cre:CHLREDRAFT_146712
ProtClustDB:CLSN2920816 Uniprot:A8HMH7
Length = 1204
Score = 471 (170.9 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 108/251 (43%), Positives = 158/251 (62%)
Query: 420 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 479
G + + + +GLA MAK+GL + + A++P F +V ADIGDEQSL+ +LSTFSGHL++
Sbjct: 398 GEEPVTPQALGLAACMAKAGLPLPAEAPARLPAFSAVLADIGDEQSLTANLSTFSGHLRR 457
Query: 480 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG---SLLTIATTHHGELK 536
I + ++ ++L+LLDE+G GT+PLEG ALG++LL+ G LT+ATTHH +
Sbjct: 458 IQTLRGEADGKALLLLDELGTGTDPLEGAALGLALLKRLVNGGVGAGALTVATTHHSIMT 517
Query: 537 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596
LK+ + FENA +EFDE L PTYK+LWG+PGRS+A+NIA RLGL VV AR
Sbjct: 518 GLKFDDPRFENASVEFDEAALAPTYKLLWGIPGRSNALNIASRLGLDEEVVSAARGRLDG 577
Query: 597 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 656
A++N I +E + Q LE E R + ++ + LR R ++L + KVQ
Sbjct: 578 GVADVNAAIEGLEALRGQ-LEA--EERDSWLAAQEV--KTLRRRLEVLGN-------KVQ 625
Query: 657 KISDAAAIARS 667
++ + + AR+
Sbjct: 626 QLQETMSRARA 636
Score = 134 (52.2 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 36/108 (33%), Positives = 53/108 (49%)
Query: 199 EVSSIHGRLCIRT-GADQXXXXXXXXXXXXXXXVI--EPLSAVPLNDELQQARASVTKAE 255
EVS GR+C+ G + ++ EP +AV +N+EL ARA AE
Sbjct: 154 EVSDRGGRMCVALPGGTKAPSGGVLLGSAPGGSLVYVEPAAAVAMNNELGAARAEAQAAE 213
Query: 256 EDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 303
E VL LT + LDE++ + LDV++ARA Y + G P++
Sbjct: 214 EQVLWNLTGLVMGCLDELQDAYRTVAWLDVLSARARYGIWVNGVLPDV 261
Score = 80 (33.2 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 85 SINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALA 144
S+ + ++LRL+++T A ++ + SLD G+ S ++ + + L P +
Sbjct: 2 SVPEEPAETLRLIEQTRAITLLEYDWATSLDYGGIQTSEAEAGLSRAAKGGMLTPQQLRG 61
Query: 145 VVALLQFSETLQLSLRAAIKED 166
+V L+ +E L+ + A +++
Sbjct: 62 IVTLVNGAERLRKQVVIAARDN 83
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 471 (170.9 bits), Expect = 3.0e-53, Sum P(4) = 3.0e-53
Identities = 109/253 (43%), Positives = 157/253 (62%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K R+L+I+GPN GGKT LKT+GLAV+MA+SGL + ++E A + W D V+ADIGDEQSL
Sbjct: 307 KNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFV-AAEKALLAWPDRVYADIGDEQSLQ 365
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
++LSTF+GHL+++ ++ ++TS SLVL+DE+G+GT+P EG AL ++LEA E G + +
Sbjct: 366 ENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLERG-VKGM 424
Query: 528 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 587
TTH LK + +NA M FD L+PTY+++ GVPGRS A+ IA RL LP V+
Sbjct: 425 VTTHLSPLKAFAQGREGIQNASMRFDLEALRPTYELVLGVPGRSYALAIARRLALPEEVL 484
Query: 588 QNARQLY---GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL 644
+ A L G A + +E ER + E R + R L K L +
Sbjct: 485 KRAEALLPEGGRLEALLER--LEAERLALE-AERERLRRELSQVER-LRKALAEREARFE 540
Query: 645 EHCASQRFRKVQK 657
E A +R + +++
Sbjct: 541 EERA-ERLKALEE 552
Score = 96 (38.9 bits), Expect = 3.0e-53, Sum P(4) = 3.0e-53
Identities = 50/189 (26%), Positives = 79/189 (41%)
Query: 151 FSETLQLSL--RAAIKEDAD---LYIR--FMPLTQM----LYQLMDMLIRNENNESLFLE 199
F E ++ +L A+K++A IR PL Q LY LMD E + F+
Sbjct: 119 FLERVRKALDEEGAVKDEASPRLAQIRRELRPLRQQILDRLYALMDR--HREAFQDRFVT 176
Query: 200 VSSIHGRLCI--RTG-ADQXXXXXXXXXXXXXXXVIEPLSAVPLNDELQQARASVTKAEE 256
+ R C+ R G A + IEP S V LN+ LQ R +
Sbjct: 177 LR--RERYCVPVRAGMAQKVPGILLDESESGATLFIEPFSVVKLNNRLQALRLKEEEEVN 234
Query: 257 DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHE 316
+L L+E++ D + + K L + LD+V A+A + G + P ++ R+ H
Sbjct: 235 RILRDLSERLAKD-EGVPKTLEALGLLDLVQAQAALARDLGLSRPAFGERYELYRAF-HP 292
Query: 317 PVTSKVSSS 325
+ V +S
Sbjct: 293 LIPDAVRNS 301
Score = 74 (31.1 bits), Expect = 3.0e-53, Sum P(4) = 3.0e-53
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 755 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 791
G LV V S GK+G V+++ EE++VQVG +K +K
Sbjct: 607 GVLVEVPSLGKRGRVVELRG--EEVLVQVGPLKMSLK 641
Score = 45 (20.9 bits), Expect = 3.0e-53, Sum P(4) = 3.0e-53
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATL 80
L VLE+ ++ ++ A+T LGRE L
Sbjct: 5 LEVLEFPRVRALLAERAKTPLGRELAL 31
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 465 (168.7 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 102/259 (39%), Positives = 154/259 (59%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D+ + ++ +L+ITGPNTGGKT+ LKT+G+ +MA++GL I +S ++ F V+
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
DIGDEQS+ QSLSTFS HL + I+ + LVLLDE+G GT+P EG AL ++LE
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
+ +ATTH EL + ENA +EFD LKPTY++ G PGRS+A+ IA+
Sbjct: 431 -RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQ 489
Query: 579 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 638
LGL +++ A+ +++++I ++E+ K Q LE E L++S + L
Sbjct: 490 GLGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQ-LEKAKEEVANLLISLKEKEAKLN 548
Query: 639 TRRKILEHCASQRFRKVQK 657
+ LE + RK ++
Sbjct: 549 DELENLEKTKEEIIRKYRE 567
Score = 83 (34.3 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP SAV +EL+ + E +L T+++ +L EI++ + ++D++ A+A
Sbjct: 219 IEPYSAVEAGNELKTLELQEKEIIEKILKDFTQRLACNLTEIKRTYELLGEIDLIVAKAR 278
Query: 292 YSLSFGGTSPNI 303
+L P I
Sbjct: 279 LALELDAYKPRI 290
Score = 57 (25.1 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 752 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 795
P VG+ V + G+K V+ V + +VQ G MK + F I
Sbjct: 629 PKVGETVELVEVGQKAEVLAV--GENYAIVQAGIMKLNVSFDQI 670
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 465 (168.7 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 102/259 (39%), Positives = 154/259 (59%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D+ + ++ +L+ITGPNTGGKT+ LKT+G+ +MA++GL I +S ++ F V+
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
DIGDEQS+ QSLSTFS HL + I+ + LVLLDE+G GT+P EG AL ++LE
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
+ +ATTH EL + ENA +EFD LKPTY++ G PGRS+A+ IA+
Sbjct: 431 -RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQ 489
Query: 579 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 638
LGL +++ A+ +++++I ++E+ K Q LE E L++S + L
Sbjct: 490 GLGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQ-LEKAKEEVANLLISLKEKEAKLN 548
Query: 639 TRRKILEHCASQRFRKVQK 657
+ LE + RK ++
Sbjct: 549 DELENLEKTKEEIIRKYRE 567
Score = 83 (34.3 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP SAV +EL+ + E +L T+++ +L EI++ + ++D++ A+A
Sbjct: 219 IEPYSAVEAGNELKTLELQEKEIIEKILKDFTQRLACNLTEIKRTYELLGEIDLIVAKAR 278
Query: 292 YSLSFGGTSPNI 303
+L P I
Sbjct: 279 LALELDAYKPRI 290
Score = 57 (25.1 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 752 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 795
P VG+ V + G+K V+ V + +VQ G MK + F I
Sbjct: 629 PKVGETVELVEVGQKAEVLAV--GENYAIVQAGIMKLNVSFDQI 670
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 452 (164.2 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 94/227 (41%), Positives = 142/227 (62%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP++ I + R L+ITGPN GGKTI LKT+GL + SGLHI + ++ F++VF
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
DIGD QS+ +LSTFS H+K + I+ S + +L+L DEIG+GT P EG AL +S+LE F
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
+G + T+A+TH+GE+K +D F NA M+F+ L+P YK++ G G S+A+ IA
Sbjct: 433 YLAGCI-TVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIAN 491
Query: 579 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 625
++ + V++ A+ G + E + E + K +FL+ E H+
Sbjct: 492 KMNVRERVLKRAKAYMGNKEYTL-EKVNESKIRKPKFLQEKRE-NHY 536
Score = 81 (33.6 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP + LN EL +A E +L L+ + ++ I+ + I Q D+V A+A
Sbjct: 221 IEPHTVTKLNAELASLKAEEAMEEYQILATLSGMVVENIYHIKINMELISQYDMVFAKAK 280
Query: 292 YSLSFGGTSPNI 303
+S S G P +
Sbjct: 281 FSKSIDGIEPKL 292
Score = 44 (20.5 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 57 LEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
L++++L V + + LG+E L SI + ++ L E A ++ + H +
Sbjct: 9 LQYNELKDIVKFYCVSGLGKELINKLEPSTSI-KVVRNRLNETTEARAILDAEGH----V 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQ 150
G+ S + S I+++ + L P E ++V L+
Sbjct: 64 PFFGI--SNIASTIQKLEKGMILDPEELVSVSDFLR 97
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 452 (164.2 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 94/227 (41%), Positives = 142/227 (62%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP++ I + R L+ITGPN GGKTI LKT+GL + SGLHI + ++ F++VF
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
DIGD QS+ +LSTFS H+K + I+ S + +L+L DEIG+GT P EG AL +S+LE F
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
+G + T+A+TH+GE+K +D F NA M+F+ L+P YK++ G G S+A+ IA
Sbjct: 433 YLAGCI-TVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIAN 491
Query: 579 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 625
++ + V++ A+ G + E + E + K +FL+ E H+
Sbjct: 492 KMNVRERVLKRAKAYMGNKEYTL-EKVNESKIRKPKFLQEKRE-NHY 536
Score = 81 (33.6 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
IEP + LN EL +A E +L L+ + ++ I+ + I Q D+V A+A
Sbjct: 221 IEPHTVTKLNAELASLKAEEAMEEYQILATLSGMVVENIYHIKINMELISQYDMVFAKAK 280
Query: 292 YSLSFGGTSPNI 303
+S S G P +
Sbjct: 281 FSKSIDGIEPKL 292
Score = 44 (20.5 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 57 LEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
L++++L V + + LG+E L SI + ++ L E A ++ + H +
Sbjct: 9 LQYNELKDIVKFYCVSGLGKELINKLEPSTSI-KVVRNRLNETTEARAILDAEGH----V 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQ 150
G+ S + S I+++ + L P E ++V L+
Sbjct: 64 PFFGI--SNIASTIQKLEKGMILDPEELVSVSDFLR 97
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 440 (159.9 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
Identities = 104/307 (33%), Positives = 165/307 (53%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
+V+VITGPN GGKTI LKT GL +MA +G+ + ++ + P + DIGDEQS+ QS
Sbjct: 342 QVMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQS 401
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
LSTFS H+ I I+ ++ +++VLLDE+G GT P++G A+ ++L + G+L+ IAT
Sbjct: 402 LSTFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDKGALV-IAT 460
Query: 530 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 589
TH ++ + D NA MEFD L P Y++ G PG+S A+ IA R GLP VV
Sbjct: 461 THLTDIVGFVHKRDGMVNASMEFDRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAV 520
Query: 590 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM----LSRNLHKNLLR--TRRKI 643
A + E +E++ E++ + + E + EA +R + L TRR+
Sbjct: 521 ATGMLSRMETEFHELLAELKDQRRRHEEALAEAERLRRDAEEKARIARERLAEAETRRRE 580
Query: 644 LEHCASQRFRKVQKIS--DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 701
A Q +++ + + D AI + +++ +A + V + Q+ P + S
Sbjct: 581 ATEKALQEAKEIVRAARRDVNAIIEEARREKSREARKKIDEAEAAVEAKLQEFHPEETLS 640
Query: 702 LHCTKVG 708
L + G
Sbjct: 641 LDAVREG 647
Score = 78 (32.5 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEE-DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 290
+EPL + L +EL+ A KAE ++ + ++ + D +++ +++LDV+N A
Sbjct: 223 MEPLEIIGLANELENLVAE-EKAEMIRIVRTICRMIRQEADGLDEQFRILVRLDVLNGIA 281
Query: 291 TYSLSFGGTSPNI 303
++ S G +P I
Sbjct: 282 LFADSLGAETPEI 294
Score = 61 (26.5 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREAT 79
E+LR LE+DK+ +VS +A + R+ T
Sbjct: 5 ETLRTLEFDKILSAVSGYAHSGATRDET 32
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 259 (96.2 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 67/225 (29%), Positives = 113/225 (50%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D + V +ITGPN GK+ ++ + L +M++ G + ++E A +P FD +F
Sbjct: 590 VPNDCIMPENMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATE-AVLPVFDQIFT 648
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG L STF + + N I+ ++ +SL+L DEIG GT+ +G AL +++E
Sbjct: 649 RIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHI 708
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINI 576
+ T+ +TH+ EL L+ S D +N + E K + KI G +S I++
Sbjct: 709 HDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAIEENGKVVFLHKIQDGAADKSYGIHV 768
Query: 577 AERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 621
A+ LP ++ A+++ + VI + K Q E + E
Sbjct: 769 AQLAELPDSLIARAKEVLAQLEGQEEIVIPKRVEVKAQEQEVIPE 813
Score = 72 (30.4 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 240 LNDELQQARASVTKAEE-------DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 292
+ DEL++ + +AEE D+ AL E+++V + +++ + I +LDV+ + AT
Sbjct: 494 ITDELKEKETLILEAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATV 553
Query: 293 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLP 334
S P + +++ PV KV + + +Y+P
Sbjct: 554 SEEEQFVKPVLTTKREIFIKDGRHPVVEKVLNGK----LYVP 591
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 281 (104.0 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 84/267 (31%), Positives = 140/267 (52%)
Query: 379 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 438
K T LSP VS+ H +D+ + ++TGPN GGK+ L+++ A ++ S
Sbjct: 737 KLTGLSPYWFDVSSGTAVHNT-VDM-----QSLFLLTGPNGGGKSSLLRSICAAALLGIS 790
Query: 439 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 498
GL ++ +E A +P FDS+ + S S+F + +I +I+SQ+TS+SLVL+DEI
Sbjct: 791 GL-MVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEI 849
Query: 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDEVKL 557
GT +GT + S++E+ SG L ++T HG L N ++ E E +
Sbjct: 850 CRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNITYKAMGAENVEGQT 909
Query: 558 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA-EINEVIIEMERFKTQFL 616
KPT+K+ GV S A A+R G+P V+Q A LY + A + + +++ ++ T
Sbjct: 910 KPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYAKDASAEVVKPDQIITSS- 968
Query: 617 EHVHEARHFLMLSRNLHKNLLRTRRKI 643
+ + + + R+L K+L + KI
Sbjct: 969 NNDQQIQKPVSSERSLEKDLAKAIVKI 995
>TIGR_CMR|CJE_1196 [details] [associations]
symbol:CJE_1196 "DNA mismatch repair protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006259 "DNA metabolic process"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 PIRSF:PIRSF005814 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0030983 PROSITE:PS50828 GO:GO:0045005 eggNOG:COG1193
KO:K07456 ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14
RefSeq:YP_179186.1 ProteinModelPortal:Q5HU49 STRING:Q5HU49
GeneID:3231705 KEGG:cjr:CJE1196 PATRIC:20044188
HOGENOM:HOG000102093 OMA:KIEFVSG
BioCyc:CJEJ195099:GJC0-1223-MONOMER Uniprot:Q5HU49
Length = 735
Score = 269 (99.8 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 97/314 (30%), Positives = 149/314 (47%)
Query: 374 ARKGEKDTNLSPSEMQVSALELAHPV---PIDIFIARKTRVLVITGPNTGGKTICLKTVG 430
A+K + + L + AHP P + + K +VL+ITG N GGK++ LK++
Sbjct: 266 AKKKDFEFVLCDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSML 325
Query: 431 LAVMMAKSGL--HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 488
A +AK L HI +SE +K+ F A I D Q++ +STF+G + + S+
Sbjct: 326 SAAFLAKHLLPMHIKASE-SKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSK-- 382
Query: 489 SQSLVL-LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 547
++L+L +DEI GT+ E L S+L + + +L I TTHH L L N+ E
Sbjct: 383 -KNLLLGIDEIELGTDFEEAACL-YSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVEL 440
Query: 548 ACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI-- 605
+DE +P Y+ L G G+S A A R +P +V A++LYG + E++
Sbjct: 441 IAALYDEELSRPKYEFLKGTIGKSYAFETALRYQIPPNLVGEAKKLYGEDKENLEELVGK 500
Query: 606 -IEMERFKTQFLEHVHEARH-----FLMLSRNLHKNL--LRTRRKILE---HCASQRFRK 654
I +E LE+V + L L KN RT + LE H A + +K
Sbjct: 501 NINLELELKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKK 560
Query: 655 VQKISDAAAIARSL 668
++ D RSL
Sbjct: 561 TIQLKDMKDKQRSL 574
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 282 (104.3 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 70/244 (28%), Positives = 134/244 (54%)
Query: 357 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQ-VSALELAHPVPIDIFIA---RKTRVL 412
+ N E+ + G A K +K + + + V A + + +P +I++ K L
Sbjct: 951 DDLNCEIEKDGKMGSENASKEKKPFLILENNIHPVVATLMPNFIPNNIYMGCDKEKETTL 1010
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
++TGPN GGK+ L+ ++V++A+ G + S+ Y ++ D +F +G +L + ST
Sbjct: 1011 LLTGPNMGGKSTLLRQTAISVILAQIGAFVPST-YCELTIVDKIFTRLGSSDNLFEGKST 1069
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH- 531
F L+ I N++ QST SL +LDE+G GT+ +GTA+ +S LE ++ I +TH
Sbjct: 1070 FLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHY 1129
Query: 532 HGELKTLKYS---NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 588
H ++ +K++ +++ + ++ D+ K+ YK + G+ +S I+IA+ GLP +++
Sbjct: 1130 HLLVEEVKHNTNISNYHMSLSIDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIE 1189
Query: 589 NARQ 592
A +
Sbjct: 1190 LAHE 1193
Score = 39 (18.8 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 240 LN-DELQQARASVTK--AEEDVLLALTEKMQVDLDEIEKMLNGI 280
LN D++ Q R V + + D +L+L L +IE++LN I
Sbjct: 642 LNCDKINQ-RLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKI 684
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 215 (80.7 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 47/123 (38%), Positives = 72/123 (58%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L V+MA+ G ++ + E A + D +F G ++ +
Sbjct: 8 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEE-ATIGIVDGIFTRRGAADNIYKG 66
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II ++T +SLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 67 RSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 126
Query: 530 THH 532
TH+
Sbjct: 127 THY 129
Score = 52 (23.4 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 615
Y+I G+ RS +N+A+ +P ++Q A S E+ E ++ + R + ++
Sbjct: 175 YQITRGIAARSYGLNVAKLADVPREILQKAAH----KSKEL-EGLVNLRRKRLEY 224
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 262 (97.3 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 68/220 (30%), Positives = 119/220 (54%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D + R + + VITGPN GK+ ++ VG+ +++ G I + AK+P D++F
Sbjct: 590 VPNDTKLDRDSFIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFI-PARRAKIPVVDALFT 648
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG L+ +STF + ++ NI++ +T +SLV+LDE+G GT+ +G A+ ++++
Sbjct: 649 RIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYI 708
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--LKPTYKILWGVPGRSSAINI 576
+E T+ TH E+ L+ + +N ME ++ ++ Y + G S I +
Sbjct: 709 SEKLKAKTLLATHFLEITELEGKIEGVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEV 768
Query: 577 AERLGLPGIVVQNARQLYGAASAEIN--EVIIEM--ERFK 612
A+ GLP VV+ AR++ + N E I+ + E FK
Sbjct: 769 AKLAGLPEEVVEEARKILRELEEKENKKEDIVPLLEETFK 808
Score = 52 (23.4 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 11/64 (17%), Positives = 30/64 (46%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 299
L +++ A+ + E ++ L E++ +LD++ + + ++D + + A +
Sbjct: 503 LEEKILSAQTRINDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQSLAQIAYEKDWA 562
Query: 300 SPNI 303
P I
Sbjct: 563 KPQI 566
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 264 (98.0 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 90/315 (28%), Positives = 147/315 (46%)
Query: 358 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 417
SA T R K+ A +D E+Q +A+ V F + + +ITGP
Sbjct: 612 SAPTPYVRPKMLEEGARELVLEDVRHPCLELQEHVNFIANSVD---FKKEECNMFIITGP 668
Query: 418 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 477
N GGK+ +++VG AV+MA G + S A + DS+ +G ++ + LSTF +
Sbjct: 669 NMGGKSTYIRSVGTAVLMAHIGAFVPCS-LATISMVDSILGRVGASDNIIKGLSTFMVEM 727
Query: 478 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 537
+ II +T +SLV++DE+G GT+ EG + S+ E A+ T+ TH E+
Sbjct: 728 IETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITK 787
Query: 538 LKYSNDFFENACM----EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
L + +N M + D+ L Y++ GV +S I +A P VVQNA+++
Sbjct: 788 LAETLSTVKNCHMAAVADADDFTL--LYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEV 845
Query: 594 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLS-RNLHKNL-----LRTR-RKILEH 646
Y +E + + ++ LE + A L + N+ N+ L T+ K +E
Sbjct: 846 YNEFE---DEHVDKQKKEDKALLEKIQVAIQQLSTAGNNVDINVEDLTQLVTQFTKDIEQ 902
Query: 647 CASQRFRKVQKISDA 661
S F+ V S+A
Sbjct: 903 LDSDYFKSVLATSEA 917
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 263 (97.6 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 65/200 (32%), Positives = 110/200 (55%)
Query: 399 VPID-IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D + + +TR++++TGPN GK+ ++ + L V+MA+ G I + A + D +F
Sbjct: 600 IPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSFI-PARSAHIGIVDKIF 658
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE- 516
IG +LS+ +STF + + NI+ +T +SLV+LDEIG GT+ +G A+ +++E
Sbjct: 659 TRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEF 718
Query: 517 -AFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT--YKILWGVPGRSSA 573
F + T+ TH+ EL L+ EN E +P Y+I+ G +S
Sbjct: 719 LLFTDGKKAKTLFATHYKELTELEMHCQHVENFHAMVKENSGQPIFMYEIVKGHSKKSFG 778
Query: 574 INIAERLGLPGIVVQNARQL 593
I++A+ G P VV A+Q+
Sbjct: 779 IHVAKLAGFPLSVVSRAQQI 798
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 226 (84.6 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 55/220 (25%), Positives = 110/220 (50%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
+P D+ + K R++++TG N GGK+ L++ L++++A+ G + S A + D +F
Sbjct: 623 IPNDV-VLDKCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSS-ATISVVDGIFT 680
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G SQ +STF + I+ ++T S V++DE+G GT+ +G + ++ +
Sbjct: 681 RVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDI 740
Query: 519 AESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
L+I TH E+ K + ++ + ++ YK+ GV S + +A
Sbjct: 741 LNRIQCLSIFATHFHEMGKLAEQPGAVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVA 800
Query: 578 ERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 617
+ +G+ V+ A QL ++ +I+ ++ K + LE
Sbjct: 801 KMVGIDENVINKAAQLLEGLEKKL---VIDSKK-KKELLE 836
Score = 87 (35.7 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG- 298
+NDE + T+AEE+V+ L +K + + I M I LDV + +T++ + G
Sbjct: 531 INDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGI 590
Query: 299 -TSPNIFLPQDMKR 311
T PN+ LP KR
Sbjct: 591 YTRPNL-LPLGSKR 603
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 226 (84.6 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 55/220 (25%), Positives = 110/220 (50%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
+P D+ + K R++++TG N GGK+ L++ L++++A+ G + S A + D +F
Sbjct: 623 IPNDV-VLDKCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSS-ATISVVDGIFT 680
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G SQ +STF + I+ ++T S V++DE+G GT+ +G + ++ +
Sbjct: 681 RVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDI 740
Query: 519 AESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
L+I TH E+ K + ++ + ++ YK+ GV S + +A
Sbjct: 741 LNRIQCLSIFATHFHEMGKLAEQPGAVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVA 800
Query: 578 ERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 617
+ +G+ V+ A QL ++ +I+ ++ K + LE
Sbjct: 801 KMVGIDENVINKAAQLLEGLEKKL---VIDSKK-KKELLE 836
Score = 87 (35.7 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG- 298
+NDE + T+AEE+V+ L +K + + I M I LDV + +T++ + G
Sbjct: 531 INDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGI 590
Query: 299 -TSPNIFLPQDMKR 311
T PN+ LP KR
Sbjct: 591 YTRPNL-LPLGSKR 603
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 247 (92.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 76/251 (30%), Positives = 118/251 (47%)
Query: 355 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI----FIAR--- 407
D A EL + A G LS SE+ V HPV + FIA
Sbjct: 548 DFARAAAELDVLSNFAERAETLGYTSPELS-SEIGVKIEAGRHPVVERVSQTPFIANPVT 606
Query: 408 ---KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 464
+ R+L++TGPN GGK+ ++ V L +MA G + +E A + D +F IG
Sbjct: 607 LHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFV-PAERATIGPIDRIFTRIGASD 665
Query: 465 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 524
L+ STF + + NI+ +T+QSLVL+DEIG GT+ +G +L S E A+
Sbjct: 666 DLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGA 725
Query: 525 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT----YKILWGVPGRSSAINIAERL 580
+T+ TH+ EL L N + D ++ + T + + G +S + +A
Sbjct: 726 MTLFATHYFELTQLPELMSGVYN--VHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALA 783
Query: 581 GLPGIVVQNAR 591
G+P V++ A+
Sbjct: 784 GVPARVIKAAK 794
Score = 63 (27.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 47/184 (25%), Positives = 85/184 (46%)
Query: 17 NTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGR 76
+T+ A+ + N R + V D+ +++ + ++L D +V T++G
Sbjct: 248 DTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGR-DNTLAAVLDNTATAMG- 305
Query: 77 EATLTQLWSINQTYQD-SLRLLDET--NAAIEMQKHGSCSLDLTGV-DLS--LVKSAIRE 130
+ + Q W I+Q +D +L L +T N +E H S L + D+ + + A+R
Sbjct: 306 -SRMLQRW-IHQPLRDHALILARQTAVNELLETAVHESLHEQLKALGDIERIMARLALRT 363
Query: 131 VRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML-YQLMD---M 186
R R +AL+++ LQ S + QLS +K L F Q+L + ++D M
Sbjct: 364 ARPRDFARLRQALSLLPQLQLSLS-QLSAPHTVKL-GQLLGEFPQEQQLLEHAIVDNPPM 421
Query: 187 LIRN 190
LIR+
Sbjct: 422 LIRD 425
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 256 (95.2 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 64/194 (32%), Positives = 109/194 (56%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
DI++ + R +VITGPN GK+ ++ VGL +MA+ G + ++ A +P FD +F +G
Sbjct: 575 DIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFV-PAQKAILPVFDRIFTRMG 633
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L+ STF + ++ I+ +ST++SLVLLDE+G GT+ +G ++ ++ E +
Sbjct: 634 ARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIKR 693
Query: 522 GSLLTIATTHHGELKTL-KYSNDFFENACMEFDEVK-LKPTYKILWGVPGRSSAINIAER 579
G + AT H EL L K+ + +E K + T+K++ GV RS I +A+
Sbjct: 694 GCKVLFAT-HFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAKI 752
Query: 580 LGLPGIVVQNARQL 593
G+P V+ A ++
Sbjct: 753 AGIPDRVINRAYEI 766
Score = 50 (22.7 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 13/91 (14%), Positives = 45/91 (49%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 302
++ A+ + + E+++ ++ E+++ + + ++ + ++D ++ A ++ + T P
Sbjct: 489 KIMAAKERIEELEKELFKSVCEEVKKHKEVLLEISEDLAKIDALSTLAYDAIMYNYTKP- 547
Query: 303 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYL 333
+F ++ PV + + + E IY+
Sbjct: 548 VFSEDRLEIKGGRHPVVERFTQNFVENDIYM 578
Score = 39 (18.8 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 267 QVDLDEIEKMLNGIIQLDVVNARATYSLS 295
+V L+E+ +L+ + ++ + +R Y+ S
Sbjct: 315 RVSLEEMRNLLSNVRDVERIVSRVEYNRS 343
Score = 39 (18.8 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 381 TNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 413
+N+ E VS +E VP D+ R+T ++
Sbjct: 326 SNVRDVERIVSRVEYNRSVPRDLVALRETLEII 358
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 204 (76.9 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 47/125 (37%), Positives = 72/125 (57%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI--GDEQSLS 467
RV++ITGPN GGK+ +K V L V+MA+ G ++ + E A + D +F G ++
Sbjct: 7 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEE-ATIGIVDGIFTRQRRGAADNIY 65
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
+ STF L II ++T +SLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 66 KGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTL 125
Query: 528 ATTHH 532
TH+
Sbjct: 126 FVTHY 130
Score = 52 (23.4 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 615
Y+I G+ RS +N+A+ +P ++Q A S E+ E ++ + R + ++
Sbjct: 176 YQITRGIAARSYGLNVAKLADVPREILQKAAH----KSKEL-EGLVNLRRKRLEY 225
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 260 (96.6 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 70/194 (36%), Positives = 104/194 (53%)
Query: 402 DIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
DI I RK TR +ITGPN GGK+ L+ +GL V+MA+ G+ I SE A + D + I
Sbjct: 352 DIDIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSE-AHISICDKIMCRI 410
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G ++ + +STF +K II +ST SLVL+DE+G GT+ +G + ++ E A
Sbjct: 411 GAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAISEYLAI 470
Query: 521 SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAE 578
+ TH E+ L+ N +E D + +L YKI G +S AI +AE
Sbjct: 471 DIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTDQSLAIYVAE 530
Query: 579 RLGLPGIVVQNARQ 592
P VV++A++
Sbjct: 531 WADFPHEVVESAKR 544
Score = 40 (19.1 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 9/55 (16%), Positives = 31/55 (56%)
Query: 231 VIEPLSAVPLNDELQQARASVT-KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLD 284
+++ AV ++ +++ + K+ E ++ EK+ ++++ E+M+ +I ++
Sbjct: 107 IVKLYEAVRISKNIKEELKEMNNKSIEKEIIEPLEKITEEMEKFEEMVVTLIDIE 161
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 251 (93.4 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 68/220 (30%), Positives = 115/220 (52%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D+ RV V+TGPN GK+ L+ L ++A+ G + ++ A + D VF+
Sbjct: 599 VPNDLAFTSAERVCVLTGPNMAGKSTYLRQNALITILAQMGSFV-PADSAHIGVVDRVFS 657
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG +++ STF + + NI++ +T +SLV+LDE+G GT+ L+G ++ ++LE
Sbjct: 658 RIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYL 717
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEF----DEVKLKPTYKILWGVPGRSSAI 574
+S + TI TH+ EL L+ + +E DEV L YKI+ G S I
Sbjct: 718 HDSVNCKTIFATHYNELCDLESKLPRMKCYSIEVKRWRDEVLLM--YKIVPGRGDNSYGI 775
Query: 575 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 614
+ A G+P +++ A ++ + I E + ER + +
Sbjct: 776 HTAMLSGIPEAIIRRATEIAKEKNLSI-ENSLSNERIRVK 814
Score = 53 (23.7 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 16/85 (18%), Positives = 39/85 (45%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 299
L ++ +A + K E ++ L K+ +++M+ I +LDV+ + A ++
Sbjct: 513 LEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASFAEIAVQRKYV 572
Query: 300 SPNIFLPQDMKRSLTHEPVTSKVSS 324
P + +++ S P +V++
Sbjct: 573 RPQVDNSNELRISGGRHPFVEQVNA 597
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 257 (95.5 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 56/183 (30%), Positives = 104/183 (56%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
+ITGPN GGK+ L+ L ++MA+ G + +S YAK+ D++F+ +G LS ST
Sbjct: 697 LITGPNMGGKSTFLRQNALIILMAQMGSFVPAS-YAKIGIVDAIFSRVGSSDDLSNDKST 755
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532
F + + +I+ ++T++S V++DE+G GT+ L+G ++ S++E + T+ TH+
Sbjct: 756 FMVEMVETASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHY 815
Query: 533 GELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590
EL + C+ DE ++ T+KI+ G+ +S I A+ G+P V++ +
Sbjct: 816 HELTKNLDETPHIKCYCLAIQEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLERS 875
Query: 591 RQL 593
+ +
Sbjct: 876 KSI 878
Score = 48 (22.0 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 293
L DE+ +A + V + E + L + + +EI+++ + I LD+ + A S
Sbjct: 574 LEDEINRAASKVLEYEIQLYYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKIS 627
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 268 (99.4 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 75/225 (33%), Positives = 120/225 (53%)
Query: 390 VSALELAHPVPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 448
V L L VP DI + + KTR L++TGPN GGK+ ++ V L +M + G ++ ++ A
Sbjct: 850 VEQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYV-PAQAA 908
Query: 449 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508
K+ D+VF +G ++ STF L + +I+ Q+T +SLV+LDE+G GT+ +G
Sbjct: 909 KLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGV 968
Query: 509 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYS--NDFFENACMEFDEV------KLKPT 560
A+ ++L+ S LT+ TH+ L + +S + N M F E +
Sbjct: 969 AIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFL 1028
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 605
Y+I GV RS +N+A LP +++ A+Q SAE+ E I
Sbjct: 1029 YEIGEGVAHRSYGLNVARLANLPAPLLEMAKQ----KSAELEEKI 1069
Score = 39 (18.8 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 246 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 301
Q R ++ A + LAL ++ + + + + LD + + AT + G P
Sbjct: 777 QHREALAAACDKAFLALQAEIATNYQALRDCVQSLATLDCLVSLATLASQPGYVKP 832
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 268 (99.4 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 75/225 (33%), Positives = 120/225 (53%)
Query: 390 VSALELAHPVPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 448
V L L VP DI + + KTR L++TGPN GGK+ ++ V L +M + G ++ ++ A
Sbjct: 850 VEQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYV-PAQAA 908
Query: 449 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508
K+ D+VF +G ++ STF L + +I+ Q+T +SLV+LDE+G GT+ +G
Sbjct: 909 KLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGV 968
Query: 509 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYS--NDFFENACMEFDEV------KLKPT 560
A+ ++L+ S LT+ TH+ L + +S + N M F E +
Sbjct: 969 AIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFL 1028
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 605
Y+I GV RS +N+A LP +++ A+Q SAE+ E I
Sbjct: 1029 YEIGEGVAHRSYGLNVARLANLPAPLLEMAKQ----KSAELEEKI 1069
Score = 39 (18.8 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 246 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 301
Q R ++ A + LAL ++ + + + + LD + + AT + G P
Sbjct: 777 QHREALAAACDKAFLALQAEIATNYQALRDCVQSLATLDCLVSLATLASQPGYVKP 832
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 252 (93.8 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 65/185 (35%), Positives = 103/185 (55%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
R+ +ITGPN+ GK+I LK VGL + MA G ++ ++E A++ D ++ I +S+S
Sbjct: 543 RIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAE-AEIGAIDGIYTRIHTRESVSVG 601
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL---LT 526
LSTF L Q+ ++ +T +SLVL+DE G GTN L+G AL ++L+ + G+ +
Sbjct: 602 LSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQCPQVF 661
Query: 527 IATTHHGELKT-LKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLP 583
++T H ++ L E ME D +L Y+I GV S A NIA G+P
Sbjct: 662 VSTNFHSLMQLELLPDTPLLEYLAMETHQDGDELVFFYQIKQGVSTVSHAANIAALAGMP 721
Query: 584 GIVVQ 588
+++
Sbjct: 722 AKIIE 726
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 257 (95.5 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 62/201 (30%), Positives = 114/201 (56%)
Query: 396 AHPVPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 454
A+ VP D+++ ++ +L+ITGPN GK+ ++ L V++A+ G + +EYA+V D
Sbjct: 579 ANFVPNDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILAQIGSFV-PAEYARVGLVD 637
Query: 455 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514
+ IG L++ STF + + NI+ +TS+SL+LLDE+G GT+ +G ++ ++
Sbjct: 638 KILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEVGRGTSTYDGISIAEAI 697
Query: 515 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSS 572
+E + T+ +TH+ EL L+ +N + E ++K +K++ G +S
Sbjct: 698 IEYIQKKIKARTLFSTHYHELTGLEGEIPGVKNFTVLVQEKGEEVKFLHKVVPGKTDKSY 757
Query: 573 AINIAERLGLPGIVVQNARQL 593
I +A+ GLP VV+ A ++
Sbjct: 758 GIYVAKLAGLPREVVERAYEI 778
Score = 44 (20.5 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 72 TSLGREATLTQLWSINQTYQDSLRLLDETNA--AIEMQKHGSCSLDLTGVDLSLVKSAIR 129
T + T+T+ + + + + + L E + A+ + + + L +T VD ++
Sbjct: 104 TKIYTPGTVTEEFFLQEKTNNYIIALAEKDGLIALAVAEVSTGYLGITSVDEGKIEVLAS 163
Query: 130 EVRRASPLRPNEALAV 145
E+RR L P EA+ +
Sbjct: 164 EIRR---LAPTEAVVL 176
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 264 (98.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 73/229 (31%), Positives = 121/229 (52%)
Query: 385 PSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 444
P+ Q+ +A+ + I+I K RVL+ITGPN GGK+ +KTV L +M + G + L
Sbjct: 770 PTIEQLRPNYVANDININIEYD-KNRVLIITGPNMGGKSSYVKTVALLTVMTQIGCY-LP 827
Query: 445 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 504
+ A + FDS+F +G ++ + STF + Q NIIS +++SL++LDEIG GT
Sbjct: 828 CQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNIISMMSNRSLIILDEIGRGTGT 887
Query: 505 LEGTALGMSLLEAFAESG-SLLTIATTHHGELKTLK--YSNDFFENACMEFDEVKLK-P- 559
++G +L S+L+ ES L + TH+ + L+ Y N N M + E+K P
Sbjct: 888 IDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIKNNTPG 947
Query: 560 -------TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 601
Y + GV S +N+A+ G+ +++ A ++ ++I
Sbjct: 948 EIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQAYRVSEKVKSDI 996
Score = 39 (18.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 355 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAH 397
D+E + + + K K+ L+P E Q+ L H
Sbjct: 79 DVEKRKSTTSSGSSFSSESKPKRPKEKRLTPLEKQILELTEQH 121
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 251 (93.4 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 60/193 (31%), Positives = 102/193 (52%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D+ + TR+LVITGPN GGK+ ++ L V++A G + ++ ++ D +F IG
Sbjct: 599 DLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAR-CELSLVDRIFTRIG 657
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L+ STF + + NI+ +T +SLVL+DE+G GT+ +G +L + E A +
Sbjct: 658 SSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLART 717
Query: 522 GSLLTIATTHHGELKTLKYSNDFFENACMEFDE--VKLKPTYKILWGVPGRSSAINIAER 579
+ T+ TH+ EL L S N + E ++ + +L G +S + +A+
Sbjct: 718 RAF-TLFATHYFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQL 776
Query: 580 LGLPGIVVQNARQ 592
G+P V+Q AR+
Sbjct: 777 AGVPSPVIQRARE 789
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 260 (96.6 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 74/257 (28%), Positives = 131/257 (50%)
Query: 386 SEMQVSALELAHP---VPIDI-FIARKTRV-----LVITGPNTGGKTICLKTVGLAVMMA 436
S +++ +E HP V DI FI+ ++ +ITGPN GGK+ ++ +G +MA
Sbjct: 596 SSRKINLIESRHPLLEVQDDINFISNDVKMDDKHFAIITGPNMGGKSTYIRQIGTIALMA 655
Query: 437 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 496
+ G I +++ A++P FD++ + +G S + LSTF + + +I++ +T+ SL+++D
Sbjct: 656 QVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSILATATANSLIIID 715
Query: 497 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 556
E+G GT+ +G L ++ E + AT H EL L D EN + ++
Sbjct: 716 ELGRGTSTYDGFGLAWAISEELIKRKCFAVFATHFH-ELSQLSEKYDGVENLNLMAEQTN 774
Query: 557 LKPT--YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 614
T YK+ G+ S I++AE+L +P +V A++ S E I+ + +T+
Sbjct: 775 EDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMAKRKVEELS---EEPPIKKQCSETE 831
Query: 615 FLEHVHEARHFLMLSRN 631
E + R L RN
Sbjct: 832 VREGMSRLREILKEWRN 848
Score = 43 (20.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 273 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSL 313
++ + + + LDV+ AT ++ T P +F P + R +
Sbjct: 561 LQSLSSTLAHLDVITCFATTAMLNSYTQPKLF-PFESSRKI 600
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 91 QDSLRLLDETNAAIEMQKHGSCSLD 115
QD +LLD N + + G SLD
Sbjct: 216 QDISKLLDTENLELSLAAKGINSLD 240
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 20/114 (17%), Positives = 49/114 (42%)
Query: 3 LWAAFGDSISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRV------ 56
L+ GD +++ + K + G +C V +DS + + Y+ L+
Sbjct: 463 LYLEAGDDLNLDTASNK-LKLEQHQTHG--WCMRVTRNDSRVLRGKSQYKELQTVKSGVF 519
Query: 57 ---LEWDKLCHSVS-SFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
+E +L + ++ ++ + + ++ S+ TY+ L+ L T A +++
Sbjct: 520 FTTIEMKRLSQEYTKAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDV 573
Score = 37 (18.1 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 312 SLTHEPVTSKVSSS 325
+LT+EPV +SS+
Sbjct: 554 TLTYEPVLQSLSST 567
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 250 (93.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 70/217 (32%), Positives = 113/217 (52%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L +MA+ G ++ + E A + D +F +G ++ +
Sbjct: 813 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE-ATIGIVDGIFTRMGAADNIYKG 871
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II Q+TSQSLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 872 QSTFMEELMDTAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFV 931
Query: 530 THHGELKTLKYS-----NDFFENACMEFDEVKLKP-----------TYKILWGVPGRSSA 573
TH+ + L+ S ++ + DE K P Y+I G+ RS
Sbjct: 932 THYPPVCELEKSYLQEVGNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARSYG 991
Query: 574 INIAERLGLPGIVVQNARQLYGAASAEINEVIIEMER 610
+N+A+ +PG +++ A + S E+ E ++ M+R
Sbjct: 992 LNVAKLADVPGEILKKA----ASKSKEL-EGLVNMKR 1023
Score = 52 (23.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 253 KAEEDVLLALTEKMQVDLDEIEKML-NGIIQLDVVNAR 289
K +D + +T+K+Q+ L EI K+L N +Q V+ +
Sbjct: 636 KKRKDEIQEVTDKIQMHLQEIRKILKNPSLQYVTVSGQ 673
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 251 (93.4 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 93/369 (25%), Positives = 169/369 (45%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
+ ++TGPN GGK+ L++V A ++ GL + ++ A +P FDS+ + S +
Sbjct: 760 LFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAAS-AVIPHFDSIMLHMKAYDSPADGK 818
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 530
S+F + +I +++ ++T++SLVL+DEI GT +GT + S++E G + I+T
Sbjct: 819 SSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERLDNVGCIGIISTH 878
Query: 531 HHGELKT-LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 589
HG L N F+ E + ++PT+K++ G+ S A A + G+P ++++
Sbjct: 879 LHGIFDLPLSLHNTDFKAMGTEIIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLIIRR 938
Query: 590 ARQLYGAASAEINEV--IIEME-RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH 646
A +LY A S + + E + + E ++L L RK +E
Sbjct: 939 AEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEKPNYLRNGLELQSGSFGLLRKEIES 998
Query: 647 -----CASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVH---KRAQQLRPSA 698
C + K S + I V A++ P ++ RS ++ +R +L
Sbjct: 999 VVTTICKKKLLDLYNKRSISELIEVVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQ 1058
Query: 699 SQSLHCTKVGK-NQHVLTSNFQQTTVDKVEHPATASSSVVKD--IKQSPRVKRTELPNVG 755
+ L VG+ + H Q T+ + P + + ++ I Q P +K +L N
Sbjct: 1059 TDDL----VGRLSAHRSKEGMQDATILYILVPGKSIACQLETLLINQLP-LKGFKLINKA 1113
Query: 756 DLVHVSSFG 764
D H +FG
Sbjct: 1114 DGKH-RNFG 1121
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 246 (91.7 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 64/197 (32%), Positives = 112/197 (56%)
Query: 402 DIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
DI + A +++++TGPN GK+ LK L V+MA+ G ++ +E A++ D +F+ I
Sbjct: 598 DISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYV-PAETAELCLTDRIFSRI 656
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G + LS STF + + +I++ +TS+SL++LDEIG GT+ +G A+ +++E
Sbjct: 657 GAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHS 716
Query: 521 SGSL--LTIATTHHGELKTL-KYSNDFFE-NACMEFDEVKLKPTYKILWGVPGRSSAINI 576
SL T+ TH+ EL L Y N + D ++ ++I+ G +S I++
Sbjct: 717 QPSLHAKTLFATHYHELVELANYLPRVKNYNIAVSEDRGEVVFLHRIVPGGVDKSYGIHV 776
Query: 577 AERLGLPGIVVQNARQL 593
A+ GLPG V++ A ++
Sbjct: 777 AKLAGLPGWVIKRAYEV 793
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 234 (87.4 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 58/197 (29%), Positives = 101/197 (51%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP + + ++L+ITGPN GK+ ++ + L +MA+ G + + + A +P FD +F
Sbjct: 585 VPNNCMMGDNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKK-AVLPIFDQIFT 643
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG L STF + + N I +T SL+L DEIG GT+ +G AL +++E
Sbjct: 644 RIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYV 703
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINI 576
+ T+ +TH+ EL L+ +N + +E + +I G +S I++
Sbjct: 704 HDHIGAKTLFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHV 763
Query: 577 AERLGLPGIVVQNARQL 593
A+ LPG ++ A+ +
Sbjct: 764 AQLAELPGDLIARAQDI 780
Score = 62 (26.9 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 246 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 305
+A ++ + E ++ L EK++ + ++++ + +LD + AT S + T P F
Sbjct: 503 EAENNICELEYELFTELREKVKQYIPRLQQLAKQMSELDALQCFATISENRHYTKPE-FS 561
Query: 306 PQDMKRSLTHEPVTSKVSSSE 326
+++ PV KV S+
Sbjct: 562 KDEVEVIEGRHPVVEKVMDSQ 582
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 243 (90.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 80/259 (30%), Positives = 126/259 (48%)
Query: 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
PV + +I + VL+ITGPN GK+ LK + L +MA+ G + ++YA +F
Sbjct: 684 PVANNTYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFV-PAQYASFRIAAQIF 742
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
I + + + STF +K+I I+ + +SL+L+DE+G GTN EGT + ++ E
Sbjct: 743 TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAVCEH 802
Query: 518 FAESGSLLTIATTHHGEL---KTLKYSNDFFENACMEFDEVK--------LKPTYKILWG 566
S T+ TTH EL TL Y N EN E VK + TYK+ G
Sbjct: 803 LL-STKAFTLFTTHFLELCHIDTL-YLN--VENMHFEVQHVKNTSRNKDAILYTYKLSRG 858
Query: 567 VPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEINE---VIIEMERFKTQFLEHVHEA 622
+ + AE LP +V +AR++ + +I++ EM+R + + H A
Sbjct: 859 LTEEKHYGLKAAEASSLPPSIVLDAREITTQITRQISQNRRSSPEMDRQRAVY----HLA 914
Query: 623 RHFLMLSRN--LHKNLLRT 639
+ ++RN L + LRT
Sbjct: 915 TRLVQVARNSQLEPDRLRT 933
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 116 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 174
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 175 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 229
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 109 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 167
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 168 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 222
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 108 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 166
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 167 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 221
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 230 (86.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 63/206 (30%), Positives = 111/206 (53%)
Query: 395 LAHP-VPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
L+ P + DI + + ++L+ITGPN GK+ L+ V L +MA+ G + + E A++
Sbjct: 686 LSEPFIGNDIDLDGEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADE-AEIGL 744
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
D +F IG + ++ STF + + ++ QST +SL++LDE+G GT+ +G A+
Sbjct: 745 VDRIFTRIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIAR 804
Query: 513 SLLEAFAESGSL--LTIATTHHGELKTLKYSNDFFEN---ACMEFDEVKLKPTYKILWGV 567
+++E + L T+ TH+ EL L+ N A +E D ++ +++ G
Sbjct: 805 AVVEYIHDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVERDG-RVVFLHELRPGG 863
Query: 568 PGRSSAINIAERLGLPGIVVQNARQL 593
RS I++AE G+P V++ A L
Sbjct: 864 ADRSYGIHVAELAGIPPEVIRRASAL 889
Score = 63 (27.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/81 (19%), Positives = 34/81 (41%)
Query: 244 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 303
L AR + E D+ L +++Q LD + + + ++D + A A ++ P +
Sbjct: 607 LSDARLKLVDLERDIFQRLCDELQPHLDRLRATIAAVARIDALAALAEVAVRGRYVQPRL 666
Query: 304 FLPQDMKRSLTHEPVTSKVSS 324
+ ++ PV + S
Sbjct: 667 RTDRVLRIKQGRHPVVERTLS 687
Score = 48 (22.0 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 40/149 (26%), Positives = 56/149 (37%)
Query: 138 RPNEALAVVALLQFSETLQLS----LRAAIKEDADLYIRFMPLTQMLYQLMDMLIRNENN 193
RP A ALLQ+++ Q LRA Y+ P T+ +L++ R
Sbjct: 298 RPLATRAAGALLQYAQVTQRQRVSQLRALRVYHTGAYMLLDPQTRRNLELLESGGRQGAK 357
Query: 194 ESLFLEVSSIHGRLCIRTGADQXXXXXXXXXXXXXXXVIEPLSAVPLNDELQQARASVTK 253
SL ++ R C GA VIEPL Q A A +
Sbjct: 358 ASLI----AVLDRTCTAMGA-----RLLRRWITQPLIVIEPLQV------RQHAVARLV- 401
Query: 254 AEEDVLLALTEKMQVDLDEIEKMLNGIIQ 282
AE L + + DL ++E+ LN I Q
Sbjct: 402 AETMARLEVRSAL-ADLPDMERALNRIAQ 429
Score = 39 (18.8 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 239 PLNDELQQARASVTKAEEDVLL 260
P+ L Q A +TK E + LL
Sbjct: 221 PVQARLSQDLAPLTKEEREALL 242
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 241 (89.9 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 58/208 (27%), Positives = 108/208 (51%)
Query: 388 MQVSALELAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 446
++ + L++ + +P DI + ++ R+ +ITGPN GGK+ ++ + + +MA G + S+
Sbjct: 566 VEANYLQIKNFIPNDIHMDKENNRLNIITGPNMGGKSTYIRQIAIISLMAHIGCFVPST- 624
Query: 447 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506
YAK+P F + IG + +STF + ++ II + S +LV++DE+G GT+ E
Sbjct: 625 YAKIPIFSQIMCRIGSSDIQLKGISTFFSEMIEVSAIIKNADSDTLVIIDELGRGTSTYE 684
Query: 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN--ACMEFDEVKLKPT--YK 562
G + S+ + L + TH E+ L+ + N + DE K K + Y+
Sbjct: 685 GFGISWSVANYLLNNIKCLCLFATHFHEISNLEDEHAAVSNNHVSAKIDEAKKKISFLYE 744
Query: 563 ILWGVPGRSSAINIAERLGLPGIVVQNA 590
I G +S +++A+ LP V+ +
Sbjct: 745 IKKGFADKSYGVHVAQIAKLPQKVIDKS 772
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 241 (89.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 78/258 (30%), Positives = 122/258 (47%)
Query: 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
PV + +I + VL+ITGPN GK+ LK + L +MA+ G ++ +EYA +F
Sbjct: 684 PVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYASFRIAAQIF 742
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
I + + + STF +K+I I+ + +SL+L+DE+G GTN EG + ++ E
Sbjct: 743 TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGISYAVCEH 802
Query: 518 FAESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDEVK--------LKPTYKILWGV 567
S T+ TTH EL L Y N EN E VK + TYK+ G+
Sbjct: 803 LL-SIKAFTLFTTHFLELCHLDALYLN--VENMHFEVQHVKNTSRNKDAILYTYKLSRGL 859
Query: 568 PGRSS-AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH---VHEAR 623
+ + AE LP +V +AR + + +I I++ +R + H A
Sbjct: 860 TEEKNYGLKAAEASSLPSSIVLDARDI----TTQITRQILQNQRSSPEMDRQRAVYHLAT 915
Query: 624 HFLMLSRN--LHKNLLRT 639
+ +RN L + LRT
Sbjct: 916 RLVQAARNSQLEPDRLRT 933
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 238 (88.8 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 77/280 (27%), Positives = 139/280 (49%)
Query: 355 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP-----VPIDIFIARKT 409
DL+ + L + +G + E D +L S+ + +E P +P +++ +
Sbjct: 539 DLDFQISLLTAKDKFGWIRPKLSE-DRSLDLSDSRHPVVEATLPPGQEFIPNSVYLDTQD 597
Query: 410 RVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 468
+ + V+TGPN GK+ ++ + L ++ + G + ++ AK+P D +F IG +L+
Sbjct: 598 KAIAVLTGPNMAGKSTFMRQIALNQILFQIGAFV-PAKSAKLPIVDKLFTRIGAGDNLTA 656
Query: 469 SLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTI 527
STF +K+ NI++ T SL+L DE+G GT+ +G ++ S+LE + S TI
Sbjct: 657 GESTFFVEMKETANILNHYTEDSLILFDEVGRGTSTYDGMSIAWSILEYLSSLSVRPKTI 716
Query: 528 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAERLGLPGI 585
TH+ EL L F N +E E + + + K+ G +S I +A+ G+P
Sbjct: 717 FATHYHELTELSRLGGIF-NLYLETLEKEDRVLFLRKVKVGKAKKSFGIYVAKIAGVPEP 775
Query: 586 VVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 625
+V+ A +L ++ E+ I+ E T F E E ++F
Sbjct: 776 IVKRAAELLTDLESKKKEIKIQ-EAQPTLFTEP--ETKNF 812
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 233 (87.1 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 56/207 (27%), Positives = 107/207 (51%)
Query: 393 LELAHPV----PIDIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 447
LEL H + P DI + + K+R++++TGPN GGK+ ++ + + ++A+ G+ + ++
Sbjct: 314 LELQHNISNFIPNDIHMNKNKSRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFV-PCDF 372
Query: 448 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507
++P F + +G + +STF + + II + + SL+++DE+G GT+ EG
Sbjct: 373 CEIPIFTQIMCRVGASDFQLKGISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEG 432
Query: 508 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME--FDEVKLKPT--YKI 563
+ S+ + ++ + TH E+ + Y + N +E D+ K Y+I
Sbjct: 433 LGISWSIGKYILDNIKCFCLFATHFHEMSNIAYQCEGVINRHIETIIDQKNKKICFLYEI 492
Query: 564 LWGVPGRSSAINIAERLGLPGIVVQNA 590
G +S +N+AE LP V+Q A
Sbjct: 493 KDGASNKSYGVNVAEIAKLPKDVIQKA 519
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 230 (86.0 bits), Expect = 7.9e-16, P = 7.9e-16
Identities = 68/193 (35%), Positives = 102/193 (52%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 246 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 304
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL--- 524
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 305 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPH 364
Query: 525 LTIATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERL 580
+ +AT +L+ L + ME D L Y++ GV S A + A +
Sbjct: 365 IFVATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 423
Query: 581 GLPGIVVQNARQL 593
GLP +V +++
Sbjct: 424 GLPDKLVARGKEV 436
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 230 (86.0 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 68/193 (35%), Positives = 102/193 (52%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 258 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 316
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL--- 524
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 317 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPH 376
Query: 525 LTIATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERL 580
+ +AT +L+ L + ME D L Y++ GV S A + A +
Sbjct: 377 IFVATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 435
Query: 581 GLPGIVVQNARQL 593
GLP +V +++
Sbjct: 436 GLPDKLVARGKEV 448
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 230 (86.0 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 68/193 (35%), Positives = 102/193 (52%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 283 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 341
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL--- 524
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 342 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPH 401
Query: 525 LTIATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERL 580
+ +AT +L+ L + ME D L Y++ GV S A + A +
Sbjct: 402 IFVATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 460
Query: 581 GLPGIVVQNARQL 593
GLP +V +++
Sbjct: 461 GLPDKLVARGKEV 473
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 232 (86.7 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
+ ++++ITGPN GK+ ++ V L V+MA++G + + E A + D +F +G +L+
Sbjct: 613 ENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADE-ASIGVVDRIFTRVGASDNLA 671
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF--AESGSLL 525
+ STF + + I+ +T +SLV+LDEIG GT+ +G ++ ++ E E +
Sbjct: 672 RGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAK 731
Query: 526 TIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAERLGLP 583
T+ TH+ EL L + + +N + E + + KI+ G S I +A GLP
Sbjct: 732 TLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLP 791
Query: 584 GIVVQNARQL 593
V++ A+++
Sbjct: 792 QEVIERAKEI 801
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 232 (86.7 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
+ ++++ITGPN GK+ ++ V L V+MA++G + + E A + D +F +G +L+
Sbjct: 613 ENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADE-ASIGVVDRIFTRVGASDNLA 671
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF--AESGSLL 525
+ STF + + I+ +T +SLV+LDEIG GT+ +G ++ ++ E E +
Sbjct: 672 RGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAK 731
Query: 526 TIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAERLGLP 583
T+ TH+ EL L + + +N + E + + KI+ G S I +A GLP
Sbjct: 732 TLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLP 791
Query: 584 GIVVQNARQL 593
V++ A+++
Sbjct: 792 QEVIERAKEI 801
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 237 (88.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 57/196 (29%), Positives = 100/196 (51%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
+P D + K R+L+ITGPN GGK+ ++ L ++A G + ++ A++ D +F
Sbjct: 605 MPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFV-PAKNAQLGPIDRIFT 663
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG L+ STF + + I+ +T +SLVL+DE+G GT+ +G +L +
Sbjct: 664 RIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYL 723
Query: 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINI 576
A + TH+ EL L + +N ++ E K+ + + G +S + +
Sbjct: 724 ATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEHEEKIIFLHALREGPANKSYGLQV 783
Query: 577 AERLGLPGIVVQNARQ 592
A+ G+P V+Q+ARQ
Sbjct: 784 AQLAGIPRSVIQHARQ 799
Score = 44 (20.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 15/81 (18%), Positives = 34/81 (41%)
Query: 242 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 301
D++ +R+ E+++ L + + L +++ + I LDV+N A + + +P
Sbjct: 519 DKVLSSRSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAP 578
Query: 302 NIFLPQDMKRSLTHEPVTSKV 322
+K P+ V
Sbjct: 579 QFCDYPIIKIEAGRHPIVENV 599
Score = 40 (19.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 233 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII 281
+ L+ +PLN +LQ+ + ++ +E L L +K ++ I G+I
Sbjct: 387 QQLTNLPLNKQLQEIKNNLGLFDE--LFRLLKKAIIENPPIVIRDGGVI 433
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 225 (84.3 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 57/197 (28%), Positives = 98/197 (49%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V D +
Sbjct: 167 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFV-PCESAEVSIVDCIL 225
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L ++ E
Sbjct: 226 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 285
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAIN 575
A + TH EL L N + E L Y++ GV +S I+
Sbjct: 286 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 345
Query: 576 IAERLGLPGIVVQNARQ 592
+AE P V++ A+Q
Sbjct: 346 VAELANFPRHVIECAKQ 362
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 237 (88.5 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 69/244 (28%), Positives = 115/244 (47%)
Query: 405 IARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 464
++ + R+L+ITGPN GGK+ ++ L +MA G ++ + + P D +F +G
Sbjct: 603 LSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGAAD 661
Query: 465 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 524
L+ STF + + NI+ +T SLVL+DEIG GT+ +G +L + E A
Sbjct: 662 DLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721
Query: 525 LTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGL 582
LT+ TH+ EL L + N ++ E + + + G +S + +A G+
Sbjct: 722 LTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGV 781
Query: 583 PGIVVQNARQ-LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 641
P V++ ARQ L S N +++ + L E + NL + L T R
Sbjct: 782 PKEVIKRARQKLRELESISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSL-TPR 840
Query: 642 KILE 645
+ LE
Sbjct: 841 QALE 844
Score = 48 (22.0 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 17/83 (20%), Positives = 39/83 (46%)
Query: 242 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDV-VN-ARATYSLSFGGT 299
D++ ++ E+ + L + + L+ +++ + + +LDV VN A Y+L++ T
Sbjct: 511 DKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNY--T 568
Query: 300 SPNIFLPQDMKRSLTHEPVTSKV 322
P ++ + PV +V
Sbjct: 569 CPTFIDKPGIRITEGRHPVVEQV 591
Score = 38 (18.4 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 98 DETNAAI--EMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL 155
D AAI + + G +LD++ L + A RE A R N A + A F+E
Sbjct: 130 DNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE-DFAEMS 188
Query: 156 QLSLRAAIK 164
+ R ++
Sbjct: 189 LIEGRRGLR 197
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 237 (88.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 58/207 (28%), Positives = 102/207 (49%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D F+ R+ +ITGPN GK+ L+ L ++A+ G + ++YA++ D +F+ IG
Sbjct: 711 DCFLGESERIWLITGPNMAGKSTFLRQNALITILAQVGSFV-PADYAEIGIVDQIFSRIG 769
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L + STF + + I+ Q+T++S V++DE+G GT P +GTA+ + L
Sbjct: 770 AADDLFRDQSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYR 829
Query: 522 GSLLTIATTH-HGELKTLKYSNDFFENACMEFDEV---KLKPTYKILWGVPGRSSAINIA 577
T+ TH HG L + C + E + +K+ G+ S A+ +A
Sbjct: 830 NQCRTLFATHFHG-LADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESHALKVA 888
Query: 578 ERLGLPGIVVQNARQLYGAASAEINEV 604
+ GLP ++ AR + + E + +
Sbjct: 889 QLAGLPSETLELARSVRDSIRGEASRL 915
Score = 42 (19.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
L + Q + + + E+ + L ++ ++L +I + + + +LDV + AT
Sbjct: 617 LGGRMDQIKVQIRQEEQAIFEQLRREVILNLVKIRRNASVMDELDVACSFAT 668
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 229 (85.7 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 57/197 (28%), Positives = 99/197 (50%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E+A+V D +
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFV-PCEWAEVSIVDCIL 709
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L ++ E
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAIN 575
A + TH EL L N + E L Y++ GV +S I+
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 576 IAERLGLPGIVVQNARQ 592
+AE P V++ A+Q
Sbjct: 830 VAELANFPRHVIECAKQ 846
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 229 (85.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 65/238 (27%), Positives = 112/238 (47%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D I +I G N GK+ ++ V L ++A G + L +E+A VP D + +
Sbjct: 779 VPNDTLINETASFQLIHGCNMSGKSTYIQQVALLTIVAHIG-YFLPAEFATVPIVDQIIS 837
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G ++ + STF +K+I I+ +T SLV++DE+G GT+ ++G+++ S+ E
Sbjct: 838 RLGTSDNIQSNASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISEHL 897
Query: 519 AESGSLLTIATTHHGELKTLK--YSN-DFFENACMEFDEVKLKPTYKILWGVPGRSS-AI 574
+ G T+ TH+ +L L Y N + + D LK Y GV S +
Sbjct: 898 SMIGCY-TLFVTHYQQLLNLATFYPNIRVYHFQVSKDDSSGLKYNYLFSEGVSSIDSYGV 956
Query: 575 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 632
AE G+ V+Q+A+ + ++ N I ++ H +R L + L
Sbjct: 957 ETAELAGIDSKVIQSAKTIRNLLESKSNNNQINPNTNNQSINQYHHPSRDSYQLLQKL 1014
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 225 (84.3 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 57/197 (28%), Positives = 98/197 (49%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V D +
Sbjct: 301 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFV-PCESAEVSIVDCIL 359
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L ++ E
Sbjct: 360 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 419
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAIN 575
A + TH EL L N + E L Y++ GV +S I+
Sbjct: 420 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 479
Query: 576 IAERLGLPGIVVQNARQ 592
+AE P V++ A+Q
Sbjct: 480 VAELANFPRHVIECAKQ 496
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 228 (85.3 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 60/208 (28%), Positives = 104/208 (50%)
Query: 391 SALELAHPV---PIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 446
+ +E+ H V P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E
Sbjct: 640 ACVEVQHDVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PCE 698
Query: 447 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506
A+V D + A +G S + +STF + + +I+ +T SL+++DE+G GT+ +
Sbjct: 699 SAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD 758
Query: 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKIL 564
G L ++ E A + + TH EL L N + E L Y++
Sbjct: 759 GFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQVK 818
Query: 565 WGVPGRSSAINIAERLGLPGIVVQNARQ 592
GV +S I++AE P V++ A+Q
Sbjct: 819 TGVCDQSFGIHVAELANFPRHVIECAKQ 846
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 235 (87.8 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 76/281 (27%), Positives = 133/281 (47%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + PV + +I + ++ITGPN GK+ LK + L +MA+ G ++ +EY+
Sbjct: 623 ISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRI 681
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F I + + + STF +K+I I+ + +SL+L+DE+G GTN EG +
Sbjct: 682 AEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICY 741
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKIL 564
++ E + S T+ TH EL + EN E VK + TYK+
Sbjct: 742 AVCE-YLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLS 800
Query: 565 WGVPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEI--NEVII-EMERFKTQFLEHVH 620
G+ + + AE LP +V +A+++ + +I N+ EMER + + H
Sbjct: 801 KGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVY----H 856
Query: 621 EARHFLMLSRN--LHKNLLRTRRKILEHCASQRFRKVQKIS 659
A + +RN L + LRT L+ F + +++S
Sbjct: 857 LATRLVQTARNSQLDPDSLRTYLSNLKRKYEADFPRAEQVS 897
Score = 48 (22.0 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q SL A + + + T M+ Q +++LI N+ NN +L
Sbjct: 238 AVAALLKYIEFIQNSLYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTL 295
Query: 197 F 197
F
Sbjct: 296 F 296
Score = 39 (18.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 60 DKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR 95
DKL ++ T T L +N+ Q+SLR
Sbjct: 517 DKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLR 552
Score = 38 (18.4 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 237 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNG--IIQLDVV--NARATY 292
++PL AR + D +K+ + +I K+ N D++ N R
Sbjct: 490 SLPLRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQE 549
Query: 293 SL 294
SL
Sbjct: 550 SL 551
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 229 (85.7 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 67/230 (29%), Positives = 111/230 (48%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1102 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1160
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I++ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1161 SGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTL 1220
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1221 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1279
Query: 578 ERLGLPGIVVQN----ARQLYGAASAE--INEVIIEMERFKTQFLEHVHE 621
LP V+Q AR+ + EV + ER T E VH+
Sbjct: 1280 RLANLPEEVIQKGHRKAREFEKMTQSLRLFREVCLASER-STVDAEAVHK 1328
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 231 (86.4 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 64/207 (30%), Positives = 105/207 (50%)
Query: 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
P +++ A + + ++TGPN GGK+ ++ VGL V+MA+ G HI ++ ++ D +F
Sbjct: 940 PNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAAS-CRLSLVDRIF 998
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+G + + STF L + I+ +T SLVLLDE+G GT +GTA+ S++
Sbjct: 999 TRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVN- 1057
Query: 518 FAESGSLLTIATTHHGELKTLKYSND----FFENACMEFDEVKLKPT-------YKILWG 566
F + T+ +TH+ L + ND ACM +E PT YK G
Sbjct: 1058 FLANLKCRTLFSTHYHNLIDF-FHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAG 1116
Query: 567 VPGRSSAINIAERLGLPGIVVQNARQL 593
+S N A+ G+P +++ A +L
Sbjct: 1117 ACPKSYGFNAAKLAGMPQGIIKRAYEL 1143
Score = 49 (22.3 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 293
++Q A + +D+ L EK D+ ++ ++ + LDV+ + A Y+
Sbjct: 853 DMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAEYA 903
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 227 (85.0 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 61/198 (30%), Positives = 102/198 (51%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K + VITGPN GGK+ L+ + V++A+ G + S+ A+V D +F+ +G L
Sbjct: 763 KDNLWVITGPNMGGKSTFLRQNAIIVILAQIGCFVPCSK-ARVGIVDKLFSRVGSADDLY 821
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
+STF + + I+ +T +SL +LDEIG GT+ EG ++ + L+ E+ T+
Sbjct: 822 NEMSTFMVEMIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTL 881
Query: 528 ATTHHG-ELKTL---KYSND------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
TH G ELK + K S F+++ + +K+ G+ +S AI +A
Sbjct: 882 FATHFGQELKQIIDNKCSKGMSEKVKFYQSGITDLGGNNFCYNHKLKPGICTKSDAIRVA 941
Query: 578 ERLGLPGIVVQNARQLYG 595
E G P ++ AR++ G
Sbjct: 942 ELAGFPMEALKEAREILG 959
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 232 (86.7 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 61/198 (30%), Positives = 99/198 (50%)
Query: 399 VPIDI-FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ FI+ + +ITGPN GGK+ ++ VG+ V+MA+ G + E A++ D V
Sbjct: 651 IPNDVTFISGEKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDE-AELSVVDCVL 709
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + I+ ++ SL+++DE+G GT+ +G L ++ E
Sbjct: 710 ARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFEN---ACMEFDEVKLKPTYKILWGVPGRSSAI 574
A + TH EL L N + D L YK+ GV +S I
Sbjct: 770 IATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALTTDST-LTMLYKVKKGVCDQSFGI 828
Query: 575 NIAERLGLPGIVVQNARQ 592
++AE P V+ NAR+
Sbjct: 829 HVAELASFPKHVIANARE 846
Score = 45 (20.9 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 293
LN+E ++R +A+ ++ + +D ++ + I QLD V + A S
Sbjct: 559 LNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVVSFAVVS 612
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 222 (83.2 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 68/194 (35%), Positives = 103/194 (53%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 246 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 304
Query: 468 QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL-- 524
LSTF L +Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 305 LGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCP 364
Query: 525 -LTIATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAER 579
+ +AT +L+ L + ME D L Y++ GV S A + A +
Sbjct: 365 HIFVATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQ 423
Query: 580 LGLPGIVVQNARQL 593
GLP +V +++
Sbjct: 424 AGLPDKLVARGKEV 437
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 235 (87.8 bits), Expect = 6.3e-15, Sum P(3) = 6.3e-15
Identities = 76/281 (27%), Positives = 133/281 (47%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + PV + +I + ++ITGPN GK+ LK + L +MA+ G ++ +EY+
Sbjct: 655 ISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRI 713
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F I + + + STF +K+I I+ + +SL+L+DE+G GTN EG +
Sbjct: 714 AEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICY 773
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKIL 564
++ E + S T+ TH EL + EN E VK + TYK+
Sbjct: 774 AVCE-YLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLS 832
Query: 565 WGVPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEI--NEVII-EMERFKTQFLEHVH 620
G+ + + AE LP +V +A+++ + +I N+ EMER + + H
Sbjct: 833 KGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVY----H 888
Query: 621 EARHFLMLSRN--LHKNLLRTRRKILEHCASQRFRKVQKIS 659
A + +RN L + LRT L+ F + +++S
Sbjct: 889 LATRLVQTARNSQLDPDSLRTYLSNLKRKYEADFPRAEQVS 929
Score = 48 (22.0 bits), Expect = 6.3e-15, Sum P(3) = 6.3e-15
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q SL A + + + T M+ Q +++LI N+ NN +L
Sbjct: 276 AVAALLKYIEFIQNSLYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTL 333
Query: 197 F 197
F
Sbjct: 334 F 334
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 60 DKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR 95
DKL ++ T T L +N+ Q+SLR
Sbjct: 549 DKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLR 584
Score = 38 (18.4 bits), Expect = 6.3e-15, Sum P(3) = 6.3e-15
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 237 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNG--IIQLDVV--NARATY 292
++PL AR + D +K+ + +I K+ N D++ N R
Sbjct: 522 SLPLRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQE 581
Query: 293 SL 294
SL
Sbjct: 582 SL 583
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 227 (85.0 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 67/228 (29%), Positives = 118/228 (51%)
Query: 390 VSALELAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 448
+ +L++ H VP DI ++ + ++ +ITGPN GGK+ ++ V L +MA+ G + + E
Sbjct: 765 IESLDV-HYVPNDIMMSPENGKINIITGPNMGGKSSYIRQVALLTIMAQIGSFVPAEEI- 822
Query: 449 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508
++ F++V IG + STF + I +I+ +SL+LLDE+G GT +G
Sbjct: 823 RLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGTGTHDGI 882
Query: 509 ALGMSLLEAFAE-SGSLLTIATTHH---GELKT---LKYSNDFFENACMEFDEVKLKPTY 561
A+ +L++ F+E S L + TTH GE+K+ Y D+ E D + + Y
Sbjct: 883 AISYALIKYFSELSDCPLILFTTHFPMLGEIKSPLIRNYHMDYVEEQKTGEDWMSVIFLY 942
Query: 562 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE-INEVIIEM 608
K+ G+ S +N+A+ L ++ A + E INE +++
Sbjct: 943 KLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRKESINEDALKL 990
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 228 (85.3 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 57/195 (29%), Positives = 98/195 (50%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1055 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1113
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I++ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1114 SGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTL 1173
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1174 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1232
Query: 578 ERLGLPGIVVQNARQ 592
LP V+Q +
Sbjct: 1233 RLANLPEEVIQKGHR 1247
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 229 (85.7 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 74/282 (26%), Positives = 135/282 (47%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + P+ + +I + L+ITGPN GK+ LK + L +MA+ G ++ +EY+
Sbjct: 519 ISVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRI 577
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F I + + + STF +K+I I+ + ++SL+L+DE+G GT+ EG +
Sbjct: 578 AEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICY 637
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKIL 564
++ E + S T+ TH EL ++ EN E VK + TYK+
Sbjct: 638 AVCE-YLLSLKAFTLFATHFLELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLC 696
Query: 565 WGVPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH----V 619
G+ + + AE LP +V +A+++ +A+I I++ +R T +E
Sbjct: 697 KGLTEEKNYGLKAAEVSSLPPSIVLDAKEI----TAQITRQILQNQR-STPEMERQRAVY 751
Query: 620 HEARHFLMLSRN--LHKNLLRTRRKILEHCASQRFRKVQKIS 659
H A + +RN L + LR L+ F + +++S
Sbjct: 752 HLATRLVQTARNSQLDPDSLRMYLSNLKKKYETDFSRAEQVS 793
Score = 45 (20.9 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q S+ A + + + T M+ Q +++LI N+ NN +L
Sbjct: 140 AVAALLKYVEFIQNSVYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDCRNNHTL 197
Query: 197 F 197
F
Sbjct: 198 F 198
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 234 (87.4 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 62/207 (29%), Positives = 105/207 (50%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
DI ++ RV +ITGPN GK+ L+ L ++A G + +++A + D VF+ +G
Sbjct: 600 DIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFV-PAQHAHIGVIDKVFSRVG 658
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
+++ STF + + II+Q+T +S V+LDEIG GT +G ++ S++E
Sbjct: 659 ASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNV 718
Query: 522 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAER 579
I TH+ EL L + + CM+ +E K + +I+ G +S I++A+
Sbjct: 719 NKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYGIHVAKL 778
Query: 580 LGLPGIVVQNARQLYGAASAEINEVII 606
G P V+ A L A NE ++
Sbjct: 779 AGFPQSVLDRAEDLMSKLKA--NEDLL 803
Score = 39 (18.8 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 299
L ++ AR + E + L + D+I + I ++D++ + A ++ + T
Sbjct: 511 LESKIISARDAAINLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLTSFAELAIQYSYT 570
Query: 300 SP 301
P
Sbjct: 571 KP 572
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 224 (83.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 56/211 (26%), Positives = 109/211 (51%)
Query: 387 EMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 446
++ + +A+ V +D + ++++ITGPN GK+ L+ L ++A+ G + +E
Sbjct: 582 QLPIGEKYIANDVMLD---SASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFV-PAE 637
Query: 447 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506
A + D +F +G ++S STF + + +I++ +S+SLVL DE+G GT+ +
Sbjct: 638 SAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYD 697
Query: 507 GTALGMSLLEAFAE--SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--K 562
G ++ +++E E T+ TH+ EL ++ S +N + EV K + K
Sbjct: 698 GISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRK 757
Query: 563 ILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
+ G S I++A+ G+P +V+ A +
Sbjct: 758 LERGGSEHSFGIHVAKMAGMPKSIVKRANTI 788
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 229 (85.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 74/282 (26%), Positives = 135/282 (47%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + P+ + +I + L+ITGPN GK+ LK + L +MA+ G ++ +EY+
Sbjct: 651 ISVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRI 709
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F I + + + STF +K+I I+ + ++SL+L+DE+G GT+ EG +
Sbjct: 710 AEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICY 769
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKIL 564
++ E + S T+ TH EL ++ EN E VK + TYK+
Sbjct: 770 AVCE-YLLSLKAFTLFATHFLELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLC 828
Query: 565 WGVPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH----V 619
G+ + + AE LP +V +A+++ +A+I I++ +R T +E
Sbjct: 829 KGLTEEKNYGLKAAEVSSLPPSIVLDAKEI----TAQITRQILQNQR-STPEMERQRAVY 883
Query: 620 HEARHFLMLSRN--LHKNLLRTRRKILEHCASQRFRKVQKIS 659
H A + +RN L + LR L+ F + +++S
Sbjct: 884 HLATRLVQTARNSQLDPDSLRMYLSNLKKKYETDFSRAEQVS 925
Score = 45 (20.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q S+ A + + + T M+ Q +++LI N+ NN +L
Sbjct: 272 AVAALLKYVEFIQNSVYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDCRNNHTL 329
Query: 197 F 197
F
Sbjct: 330 F 330
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 233 (87.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 61/200 (30%), Positives = 107/200 (53%)
Query: 399 VPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
VP D + ++ + L++TGPN GK+ ++ L +MA+ G + +S YA V D VF
Sbjct: 619 VPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPAS-YASVGIIDQVF 677
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
IG L+ STF + ++ NI++ ++ +SLVLLDEIG GT+ +G ++ +++E
Sbjct: 678 TRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEF 737
Query: 518 FAESGS--LLTIATTHHGELKTLKYSNDFFEN--ACMEFDEVKLKPTYKILWGVPGRSSA 573
G + + TH+ +L L+ +N ++ D +L KI+ G RS
Sbjct: 738 LHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKEDGHELVFLRKIVPGATDRSYG 797
Query: 574 INIAERLGLPGIVVQNARQL 593
I++A G+P V++ A ++
Sbjct: 798 IHVARLAGVPEKVIERANEI 817
Score = 40 (19.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 370 GGNAARKGEKDTNLSPSEMQVSALE 394
GG + + GEK+ S + +S E
Sbjct: 137 GGKSGKNGEKEMEFGISFLDISTGE 161
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 217 (81.4 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 49/132 (37%), Positives = 76/132 (57%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L +MA+ G ++ + E A + D +F +G ++ +
Sbjct: 878 RVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEE-ATIGIVDGIFTRMGAADNIYKG 936
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II ++T QSLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 937 QSTFMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFV 996
Query: 530 THHGELKTLKYS 541
TH+ + L+ S
Sbjct: 997 THYPPVCELEKS 1008
Score = 61 (26.5 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFK 612
Y+I G+ RS +N+A+ +PG +++ A + S E+ E ++ M+R K
Sbjct: 1045 YQITRGIAARSYGLNVAKLADVPGEILKKA----ASKSKEL-EGLVNMKRKK 1091
Score = 47 (21.6 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 253 KAEEDVLLALTEKMQVDLDEIEKML 277
K +D + +T+K+Q L EI K+L
Sbjct: 701 KKRKDEIQDVTKKIQTHLQEIRKIL 725
Score = 39 (18.8 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 86 INQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAV 145
+ T L + E ++ +K GS S+ + GV + + + + S R +
Sbjct: 348 MTDTSTSYLLCICENKENVKDKKRGSVSIGIVGVQPA-TGEVVFDSFQDSASRSELETRI 406
Query: 146 VALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMLYQLMDMLIRNENNESLFLEVS 201
+ L + ++L L + + E + I +T M + D IR E ++++ E S
Sbjct: 407 LCL----QPVELLLPSDLSEQTETLIH--RVTAM--SVRDDRIRVERMKNVYFEYS 454
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 216 (81.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 258 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 316
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 317 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 371
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 228 (85.3 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 59/156 (37%), Positives = 87/156 (55%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L +MA+ G ++ + E A + D +F +G ++ +
Sbjct: 890 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE-ATIGIVDGIFTRMGAADNIYKG 948
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II ++TSQSLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 949 QSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 1008
Query: 530 THHGELKTLK--YSNDFFENACMEF----DEVKLKP 559
TH+ + L+ YS+ N M F DE KL P
Sbjct: 1009 THYPPVCELEKNYSHQV-GNYHMGFLVSEDESKLDP 1043
Score = 55 (24.4 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNA 590
Y+I G+ RS +N+A+ +PG +++ A
Sbjct: 1057 YQITRGIAARSYGLNVAKLADVPGEILKKA 1086
Score = 37 (18.1 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 86 INQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDL--------SLVKSAIR-EVR-RAS 135
+ T L + E + +K G+ + + GV S SA R E+ R S
Sbjct: 360 MTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMS 419
Query: 136 PLRPNEALAVVALLQFSETL-QLSLRAAIKED 166
L+P E L AL + +E L + ++++D
Sbjct: 420 SLQPVELLLPSALSEQTEALIHRATSVSVQDD 451
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 235 (87.8 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 63/196 (32%), Positives = 101/196 (51%)
Query: 400 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 459
PI++ R R+L+ITGPN GGK+ ++ L +MA G ++ +E A + D +F
Sbjct: 607 PIELNPQR--RMLIITGPNMGGKSTYMRQTALIALMAHIGSYV-PAESASIGPLDRIFTR 663
Query: 460 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519
IG L+ STF + + NI+ +T SLVL+DEIG GT+ +G +L + E A
Sbjct: 664 IGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLA 723
Query: 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK----LKPTYKILWGVPGRSSAIN 575
+ +T+ TH+ EL L N A + D V+ + + + G +S +
Sbjct: 724 KEIGAMTLFATHYFELTELP--NVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLA 781
Query: 576 IAERLGLPGIVVQNAR 591
+A G+P V++NAR
Sbjct: 782 VAGLAGVPKPVIKNAR 797
Score = 42 (19.8 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 8/45 (17%), Positives = 25/45 (55%)
Query: 242 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVV 286
D++ +++ E+ + L + + L++++++ + QLDV+
Sbjct: 518 DKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVL 562
Score = 37 (18.1 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 48 RVVYESLRVLEWDKLCHSVSSFARTSLGREAT 79
R +R L WD+ SV A T E T
Sbjct: 254 RTALPHIRSLTWDRQDQSVILDAATRRNLELT 285
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 232 (86.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 61/210 (29%), Positives = 110/210 (52%)
Query: 399 VPIDIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
VP I ++ R L+ITGPN GGK+ +K + L+ +MA+SG + ++ A +P FDS+
Sbjct: 741 VPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFV-PAKSALLPIFDSIL 799
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+G +LS ++STF + + ++S++T +S+V++DE+G GT+ ++G A+ ++L
Sbjct: 800 IRMGSSDNLSVNMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHY 859
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENA--CMEFDEVKLKPT------------YKI 563
+ + TH L L+ FE C +K K YK+
Sbjct: 860 LNQYIKSYLLFVTHFPSLGILERR---FEGQLRCFHMGYLKSKEDFETSVSQSISFLYKL 916
Query: 564 LWGVPGRSSAINIAERLGLPGIVVQNARQL 593
+ GV +S +N+A G+P ++ A ++
Sbjct: 917 VPGVASKSYGLNVARMAGIPFSILSRATEI 946
Score = 40 (19.1 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 302
EL ++T + E + + ++ +E+ + + LD + + A S G T P
Sbjct: 657 ELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCLISFARISSQSGYTRPE 716
Query: 303 IFLPQDMKRSLTHE 316
D K L HE
Sbjct: 717 F---SD-KELLIHE 726
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 216 (81.1 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 246 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 304
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 305 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 359
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 222 (83.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 69/243 (28%), Positives = 116/243 (47%)
Query: 399 VPIDIFIARKTR-------VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 451
+P DI I K +++TGPN GGK+ ++ GL V+MA+ G ++ +E ++
Sbjct: 1091 IPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYV-PAEVCRLT 1149
Query: 452 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511
D VF +G + STF L + +I+ +T SLVL+DE+G GT +GTA+
Sbjct: 1150 PIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIA 1209
Query: 512 MSLLEAFAESGSLLTIATTHHGELKTLKYSND----FFENACMEFDEVKLKPT------- 560
+++ AE+ T+ +TH+ L YS ACM +E + P+
Sbjct: 1210 SAVVRELAENIKCRTLFSTHYHSLVE-DYSGSAAVRLGHMACMVENESE-DPSQETITFL 1267
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV- 619
YK + G +S N A +P ++Q + A E + + + RF + ++ V
Sbjct: 1268 YKFIEGACPKSYGFNAARLADIPEEIIQKGHRK--AKEFEKKTMSLRIFRFLCRVVDGVT 1325
Query: 620 HEA 622
H+A
Sbjct: 1326 HDA 1328
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 222 (83.2 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 69/243 (28%), Positives = 116/243 (47%)
Query: 399 VPIDIFIARKTR-------VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 451
+P DI I K +++TGPN GGK+ ++ GL V+MA+ G ++ +E ++
Sbjct: 1107 IPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYV-PAEVCRLT 1165
Query: 452 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511
D VF +G + STF L + +I+ +T SLVL+DE+G GT +GTA+
Sbjct: 1166 PIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIA 1225
Query: 512 MSLLEAFAESGSLLTIATTHHGELKTLKYSND----FFENACMEFDEVKLKPT------- 560
+++ AE+ T+ +TH+ L YS ACM +E + P+
Sbjct: 1226 SAVVRELAENIKCRTLFSTHYHSLVE-DYSGSAAVRLGHMACMVENESE-DPSQETITFL 1283
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV- 619
YK + G +S N A +P ++Q + A E + + + RF + ++ V
Sbjct: 1284 YKFIEGACPKSYGFNAARLADIPEEIIQKGHRK--AKEFEKKTMSLRIFRFLCRVVDGVT 1341
Query: 620 HEA 622
H+A
Sbjct: 1342 HDA 1344
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 230 (86.0 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 68/193 (35%), Positives = 102/193 (52%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 642
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL--- 524
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 643 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPH 702
Query: 525 LTIATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERL 580
+ +AT +L+ L + ME D L Y++ GV S A + A +
Sbjct: 703 IFVATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQA 761
Query: 581 GLPGIVVQNARQL 593
GLP +V +++
Sbjct: 762 GLPDKLVARGKEV 774
Score = 38 (18.4 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 SISIPIFNTKSFAITN 25
++S+PI K F +T+
Sbjct: 203 NVSVPILGFKKFMLTH 218
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 218 (81.8 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 65/191 (34%), Positives = 100/191 (52%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 477 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 535
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL---LT 526
LSTF L Q+ ++ +T QSLVL+DE G GTN ++G AL ++L + G +
Sbjct: 536 LSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIF 595
Query: 527 IATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGL 582
+AT +L+ L + ME D L Y++ G+ S A + A + GL
Sbjct: 596 VATNFLSLVQLQLLP-QGPLVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGL 654
Query: 583 PGIVVQNARQL 593
P ++ +++
Sbjct: 655 PDQLLTRGKEV 665
Score = 48 (22.0 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSF 69
+IS+PI K F +T+ + S + + S+ S VY+ L+ + +
Sbjct: 94 NISVPILGFKKFVLTHLVSIDQDTYSVLQIFKSEPHPS--VYKVASGLKEGLSLFGILNR 151
Query: 70 ARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
R G + L +LW T QD L+E N+ +++
Sbjct: 152 CRCKWGEK--LLRLWFTRPT-QD----LEELNSRLDV 181
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 214 (80.4 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 47/123 (38%), Positives = 73/123 (59%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L +MA+ G ++ + E + V D +F +G ++ +
Sbjct: 350 RVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEE-STVGIVDGIFTRMGAADNIYKG 408
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II ++TS+SLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 409 RSTFMEELTDTAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFV 468
Query: 530 THH 532
TH+
Sbjct: 469 THY 471
Score = 51 (23.0 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 620
Y+I GV RS +N+A+ +P +++ A S E+ E ++ ++R K +
Sbjct: 518 YQITKGVTARSYGLNVAKLADIPEEILKKAAH----KSKEL-ERLVNVKRKKLKSFAEAW 572
Query: 621 EARHFLMLSR 630
+ F L +
Sbjct: 573 KINDFQELQK 582
Score = 40 (19.1 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 251 VTKAEEDVLLALTEKMQVDLDEIEKML 277
+ K +E++L L+ K+Q+ L EI K +
Sbjct: 171 IRKKKEEILDVLS-KIQLHLLEIRKQI 196
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 220 (82.5 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 57/196 (29%), Positives = 98/196 (50%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1045 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1103
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDE-IGAGTNPLEGTALGMSLLEAFAESGSLLT 526
STF L + +I++ +T+ SLVL+DE +G GT +GTA+ ++++ AE+ T
Sbjct: 1104 SGESTFFVELSETASILTHATAHSLVLVDELVGRGTATFDGTAIANAVVKELAENIKCRT 1163
Query: 527 IATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINI 576
+ +TH+ L YS + EN C + + + YK + G +S N
Sbjct: 1164 LFSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNA 1222
Query: 577 AERLGLPGIVVQNARQ 592
A LP V+Q +
Sbjct: 1223 ARLANLPEEVIQKGHR 1238
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 216 (81.1 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 48/134 (35%), Positives = 76/134 (56%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP ++ RV++ITGPN GGK+ +K V L +MA+ G ++ + E A + D +F
Sbjct: 833 VPNSTSLSDSERVMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEE-ATIGIVDGIFT 891
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G ++ + STF L II +++ QSLV+LDE+G GT+ +G A+ + LE F
Sbjct: 892 RMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYF 951
Query: 519 AESGSLLTIATTHH 532
LT+ TH+
Sbjct: 952 IRDVKSLTLFVTHY 965
Score = 54 (24.1 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNA----RQLYGAASAEINEVIIEMERFKTQFL 616
Y+I G+ RS +N+A+ +P V+Q A ++L G S + + + T +
Sbjct: 1011 YQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRKRLECFTDLWMTHSV 1070
Query: 617 EHVH 620
+ +H
Sbjct: 1071 KDLH 1074
Score = 46 (21.3 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 236 SAVPLNDELQQARASVTK-AEEDVLLALTEKMQVDLDEIEKMLNG 279
S L ELQ +V + D+L AL ++ ++ K+LNG
Sbjct: 602 SLCQLKSELQALMPAVNSHVQSDLLRALIVELLSPVEHYLKVLNG 646
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 217 (81.4 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 64/190 (33%), Positives = 97/190 (51%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 583 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 641
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL--TI 527
LSTF L Q+ ++ +T +SLVL+DE G GTN ++G AL +++ + G
Sbjct: 642 LSTFMIDLNQVAKAVNNATERSLVLVDEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVF 701
Query: 528 ATTHHGELKTLKY--SNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLP 583
T+ L L+ + ME D L Y++ GV S A + A + GLP
Sbjct: 702 VATNFLSLVQLQLLPRGPLVQYLTMETCEDGDDLVFFYQVCEGVARASHASHTAAQAGLP 761
Query: 584 GIVVQNARQL 593
++ +Q+
Sbjct: 762 EKLIARGKQV 771
Score = 50 (22.7 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 24/97 (24%), Positives = 42/97 (43%)
Query: 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSF 69
++S+PI K F +TN + S + + S+ S VY+ L+ + +
Sbjct: 200 NVSVPILGFKKFVLTNLVSIDQDTYSVLQIFKSESHPS--VYKVASGLKEGLSLFGILNR 257
Query: 70 ARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
R G + L +LW T QD L E N+ +++
Sbjct: 258 CRCKWGEK--LLRLWFTRPT-QD----LGELNSRLDV 287
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 218 (81.8 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 56/197 (28%), Positives = 97/197 (49%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V D +
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PCESAEVSIVDCIL 709
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L ++ +
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDY 769
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAIN 575
A + TH EL L N + E L Y++ GV +S I+
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 576 IAERLGLPGIVVQNARQ 592
+AE P V+ A+Q
Sbjct: 830 VAELANFPRHVIACAKQ 846
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 221 (82.9 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 72/261 (27%), Positives = 122/261 (46%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + PV + +I + +ITGPN GK+ LK + L +MA+ G ++ +EY+
Sbjct: 576 ISVEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRI 634
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F I + + + STF +K++ I+ + +SL+L+DE+G GTN EG +
Sbjct: 635 AEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICY 694
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKIL 564
++ E S T+ TH EL + EN E VK + TYK+
Sbjct: 695 AVCEHLL-SLKAFTLFATHFLELCQIDVLYPNVENMHFEVQHVKNTSRNKEAILYTYKLS 753
Query: 565 WGVPGRSS-AINIAERLGLPGIVVQNARQLYGAASAEI--NEVII-EMERFKTQFLEHVH 620
G+ + + AE LP +V +A+ + + +I N+ EMER + + H
Sbjct: 754 KGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQITRQILQNQRSAPEMERQRAVY----H 809
Query: 621 EARHFLMLSRN--LHKNLLRT 639
A + +RN L + LRT
Sbjct: 810 LATRLVQTARNSQLDPDSLRT 830
Score = 45 (20.9 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q S+ A + + + T M+ Q +++LI N+ NN +L
Sbjct: 197 AVAALLKYVEFIQNSVYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTL 254
Query: 197 F 197
F
Sbjct: 255 F 255
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 218 (81.8 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 65/191 (34%), Positives = 100/191 (52%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 609 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESISLG 667
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL---LT 526
LSTF L Q+ ++ +T QSLVL+DE G GTN ++G AL ++L + G +
Sbjct: 668 LSTFMIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIF 727
Query: 527 IATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGL 582
+AT +L+ L + ME D L Y++ G+ S A + A + GL
Sbjct: 728 VATNFLSLVQLQLLP-QGPLVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGL 786
Query: 583 PGIVVQNARQL 593
P ++ +++
Sbjct: 787 PDQLLTRGKEV 797
Score = 48 (22.0 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSF 69
+IS+PI K F +T+ + S + + S+ S VY+ L+ + +
Sbjct: 226 NISVPILGFKKFVLTHLVSIDQDTYSVLQIFKSEPHPS--VYKVASGLKEGLSLFGILNR 283
Query: 70 ARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
R G + L +LW T QD L+E N+ +++
Sbjct: 284 CRCKWGEK--LLRLWFTRPT-QD----LEELNSRLDV 313
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 198 (74.8 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 65/233 (27%), Positives = 108/233 (46%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D + R R +ITGPN GK+ LK +MA+ G I + YA +P F+ +F+ +G
Sbjct: 574 DTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFI-PANYASLPIFNRIFSRMG 632
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L ++ S F+ + I+ + SLV+LDE+ T+ EG A+ ++ E +
Sbjct: 633 HNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKL 692
Query: 522 GSLLTIATTHHGELKTL-KYSNDFFENACM-EFDEVKLKPTYKILWG-VPGRSSAINIAE 578
S T TH ++ L YSN + + DE K +K+L G G + E
Sbjct: 693 QSY-TFLATHFLDIAALANYSNAIDNYHFLPQTDENSTKK-HKLLRGQYRGPLYGFELVE 750
Query: 579 RLGLPGIVVQNARQLYGA--ASAEINEVIIEMERFKTQ-FLEH-VHEARHFLM 627
+P V+++A+ L A+ E E + ER + + ++ H E + M
Sbjct: 751 LSTIPDEVIEHAQSLATELRANVEDTERDYDSERRRIKVYMNHRFRECAEYFM 803
Score = 60 (26.2 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 238 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 293
+ ND L+Q A + A + ++ + E+MQ + + ++ + +D + ATYS
Sbjct: 483 IAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLATYS 538
Score = 53 (23.7 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 76 REATLTQLWSINQTYQDSLRLLDETNAA-IEMQKHGSCSLDLT 117
R QL QTY++ +R ++ET A I HG+ S+ L+
Sbjct: 398 RHFVAVQLDLARQTYEEIIRNVEETGAREIAEYFHGNSSVRLS 440
Score = 41 (19.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 232 IEPLSAVP-LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQL 283
IE L P L D+L++ + + + + + + + E E +N II+L
Sbjct: 276 IEELIGKPQLKDKLRRTLSRAHELDRVIAMCIQTSTSWTVRESEAKINQIIKL 328
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 198 (74.8 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 65/233 (27%), Positives = 108/233 (46%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D + R R +ITGPN GK+ LK +MA+ G I + YA +P F+ +F+ +G
Sbjct: 574 DTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFI-PANYASLPIFNRIFSRMG 632
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L ++ S F+ + I+ + SLV+LDE+ T+ EG A+ ++ E +
Sbjct: 633 HNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKL 692
Query: 522 GSLLTIATTHHGELKTL-KYSNDFFENACM-EFDEVKLKPTYKILWG-VPGRSSAINIAE 578
S T TH ++ L YSN + + DE K +K+L G G + E
Sbjct: 693 QSY-TFLATHFLDIAALANYSNAIDNYHFLPQTDENSTKK-HKLLRGQYRGPLYGFELVE 750
Query: 579 RLGLPGIVVQNARQLYGA--ASAEINEVIIEMERFKTQ-FLEH-VHEARHFLM 627
+P V+++A+ L A+ E E + ER + + ++ H E + M
Sbjct: 751 LSTIPDEVIEHAQSLATELRANVEDTERDYDSERRRIKVYMNHRFRECAEYFM 803
Score = 60 (26.2 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 238 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 293
+ ND L+Q A + A + ++ + E+MQ + + ++ + +D + ATYS
Sbjct: 483 IAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLATYS 538
Score = 53 (23.7 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 76 REATLTQLWSINQTYQDSLRLLDETNAA-IEMQKHGSCSLDLT 117
R QL QTY++ +R ++ET A I HG+ S+ L+
Sbjct: 398 RHFVAVQLDLARQTYEEIIRNVEETGAREIAEYFHGNSSVRLS 440
Score = 41 (19.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 232 IEPLSAVP-LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQL 283
IE L P L D+L++ + + + + + + + E E +N II+L
Sbjct: 276 IEELIGKPQLKDKLRRTLSRAHELDRVIAMCIQTSTSWTVRESEAKINQIIKL 328
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 229 (85.7 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 59/202 (29%), Positives = 102/202 (50%)
Query: 394 ELAHPVPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
E+A +P D++ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V
Sbjct: 647 EIAF-IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PCESAEVSI 704
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
D + A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L
Sbjct: 705 VDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAW 764
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGR 570
++ E A + TH EL L N + E L Y++ GV +
Sbjct: 765 AISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQ 824
Query: 571 SSAINIAERLGLPGIVVQNARQ 592
S I++AE P V++ A+Q
Sbjct: 825 SFGIHVAELANFPKHVIECAKQ 846
Score = 37 (18.1 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKM--LNGII-QLDVV 286
LN+E + + +A++ ++ E + + +E M LN ++ QLD V
Sbjct: 559 LNEEYTKNKTEYEEAQDAIV---KEIVNISSGYVEPMQTLNDVLAQLDAV 605
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 229 (85.7 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 59/202 (29%), Positives = 102/202 (50%)
Query: 394 ELAHPVPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
E+A +P D++ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V
Sbjct: 647 EIAF-IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PCESAEVSI 704
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
D + A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L
Sbjct: 705 VDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAW 764
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGR 570
++ E A + TH EL L N + E L Y++ GV +
Sbjct: 765 AISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQ 824
Query: 571 SSAINIAERLGLPGIVVQNARQ 592
S I++AE P V++ A+Q
Sbjct: 825 SFGIHVAELANFPKHVIECAKQ 846
Score = 37 (18.1 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKM--LNGII-QLDVV 286
LN+E + + +A++ ++ E + + +E M LN ++ QLD V
Sbjct: 559 LNEEYTKNKTEYEEAQDAIV---KEIVNISSGYVEPMQTLNDVLAQLDAV 605
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 222 (83.2 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 61/215 (28%), Positives = 109/215 (50%)
Query: 390 VSALELAHPVPIDIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 448
V A + + +P D + R K+ ++TGPN GGK+ ++ VG+ V+MA+ G + + A
Sbjct: 639 VEAQDWVNFIPNDCRLMRGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFV-PCDKA 697
Query: 449 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508
+ D +FA +G + +STF + + +I+ ++ +SL+++DE+G GT+ +G
Sbjct: 698 SISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGF 757
Query: 509 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN-----------DFFENACMEFDEVKL 557
L ++ E + T+ TH EL L +N +F +A ++ + KL
Sbjct: 758 GLAWAICEHLVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKL 817
Query: 558 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 592
YK+ G +S I++AE P VV AR+
Sbjct: 818 TMLYKVEPGACDQSFGIHVAEFANFPESVVALARE 852
Score = 44 (20.5 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 21/52 (40%), Positives = 23/52 (44%)
Query: 105 EMQKHGSCSLDLTGVDLS-LVKSAIREVRRASPLRPNEALAVVALLQFSETL 155
E +KH DL DL LVK I VR A+ ALL FSE L
Sbjct: 224 ERKKHEFKGRDLDS-DLKRLVKGNIEPVRDLVSGFDLATPALGALLSFSELL 274
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 221 (82.9 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 73/277 (26%), Positives = 130/277 (46%)
Query: 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
P+ + ++ + L+ITGPN GK+ LK + L +MA+ G ++ +EY+ +F
Sbjct: 662 PIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYV-PAEYSSFRIAKQIF 720
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
I + + + STF +K+I I+ + +SL+L+DE+G GTN EG + ++ E
Sbjct: 721 TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCE- 779
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK--------LKPTYKILWGVPG 569
+ S T+ TH EL + EN E VK + TYK+ G+
Sbjct: 780 YLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTE 839
Query: 570 RSS-AINIAERLGLPGIVVQNARQLYGAASAEI--NEVII-EMERFKTQFLEHVHEARHF 625
+ + AE LP +V +A+++ + +I N+ EMER + + H A
Sbjct: 840 EKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVY----HLATRL 895
Query: 626 LMLSRN--LHKNLLRTRRKILEHCASQRFRKVQKISD 660
+ +RN L + LR L+ + F + +++ +
Sbjct: 896 VQTARNSQLDPDSLRIYLSNLKKKYKEDFPRTEQVPE 932
Score = 45 (20.9 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 144 AVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQML----YQLMDMLIRNE---NNESL 196
AV ALL++ E +Q S+ A + + + T M+ Q +++LI N+ NN +L
Sbjct: 278 AVAALLKYVEFIQNSVYAP--KSLKICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTL 335
Query: 197 F 197
F
Sbjct: 336 F 336
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 217 (81.4 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 63/227 (27%), Positives = 114/227 (50%)
Query: 399 VPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + + T ++ ++TG N GK+ L+ +AV+MA+ G ++ E A++ D +
Sbjct: 892 IPNDVHLGKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYV-PCEDAELSPMDRIM 950
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+G ++ Q STF L + I+ +T+++L++LDE+G G + +G A+ +L
Sbjct: 951 TRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHH 1010
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPT--YKILWGVPGRSSA 573
+ L TH+G L + + M DE K T YK++ G S
Sbjct: 1011 ISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILVDEGSKKVTFLYKLIEGQSEGSFG 1070
Query: 574 INIAERLGLPGIVVQNARQLYGAASAE-INEVIIEMERFKTQFLEHV 619
+++A G+P VV+NA + A S E + ++ E +R+ EHV
Sbjct: 1071 MHVAAMCGIPRSVVENAER--AAESFEHTSRILKERKRYIND--EHV 1113
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 214 (80.4 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 56/199 (28%), Positives = 98/199 (49%)
Query: 400 PIDIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
P D F+ + +ITGPN GK+ L+ + ++A+ G + +S A++ D +F+
Sbjct: 730 PNDCFVGNGNVNIWLITGPNMAGKSTFLRQNAIISILAQIGSFVPASN-ARIGIVDQIFS 788
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG +L Q STF + + I+ +T +S V++DEIG GT +G A+ L+
Sbjct: 789 RIGSADNLYQQKSTFMVEMMETSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYL 848
Query: 519 AESGSLLTIATTHHGEL----KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 574
+ T+ TH +L K+ K + N ++ D+ YK+ GV +S +
Sbjct: 849 STINHSRTLFATHAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSFDYKLKKGVNYQSHGL 908
Query: 575 NIAERLGLPGIVVQNARQL 593
+AE G+P V+ A ++
Sbjct: 909 KVAEMAGIPKNVLLAAEEV 927
Score = 52 (23.4 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 291
L +L+ + + + E+ VL ++T+++ + + N + +LD+ + AT
Sbjct: 638 LGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLRSLANALDELDISTSLAT 689
Score = 40 (19.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEK 265
L+++LQ AS K +ED+ L +K
Sbjct: 560 LHEKLQSLFASYDKLQEDLSKRLGKK 585
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 215 (80.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 47/123 (38%), Positives = 72/123 (58%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV++ITGPN GGK+ +K V L V+MA+ G ++ + E A + D +F G ++ +
Sbjct: 848 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEE-ATIGIVDGIFTRRGAADNIYKG 906
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 529
STF L II ++T +SLV+LDE+G GT+ +G A+ + LE F LT+
Sbjct: 907 RSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 966
Query: 530 THH 532
TH+
Sbjct: 967 THY 969
Score = 52 (23.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 615
Y+I G+ RS +N+A+ +P ++Q A S E+ E ++ + R + ++
Sbjct: 1015 YQITRGIAARSYGLNVAKLADVPREILQKAAH----KSKEL-EGLVNLRRKRLEY 1064
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 214 (80.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 65/241 (26%), Positives = 119/241 (49%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
+ITGPN GGK+ ++ VG+ ++A+ G + + A++ D++ +G S + +ST
Sbjct: 680 IITGPNMGGKSTYIRQVGVICLLAQIGCFV-PCDAAEITIVDAILCRVGAGDSQLKGVST 738
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532
F + + +I+ +T SL+++DE+G GT+ +G L S+ E A++ + TH
Sbjct: 739 FMAEMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNIGCFALFATHF 798
Query: 533 GELKTL-----KYSN----DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 583
EL L +N E + D++ L YK+ G+ +S I++AE + P
Sbjct: 799 HELTALADDCPNVTNLHVVAHVEEKSHKSDDITL--LYKVEPGISDQSFGIHVAEVVQFP 856
Query: 584 GIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI 643
+V+ A++ + E++++ E E K H A+ +L KNLL+ I
Sbjct: 857 SKIVKMAKR----KATELDDIKEETECLKKLKCSPEHIAKGSEVL-----KNLLQEWASI 907
Query: 644 L 644
L
Sbjct: 908 L 908
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 227 (85.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 67/230 (29%), Positives = 110/230 (47%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 824 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 882
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I+ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 883 SGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL 942
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 943 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1001
Query: 578 ERLGLPGIVVQN----ARQL--YGAASAEINEVIIEMERFKTQFLEHVHE 621
LP V+Q AR+ + EV + ER T E VH+
Sbjct: 1002 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASER-STVDAEAVHK 1050
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 369 YGGNAARKGEKDTNL----SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
Y + +KG K + +P M+ ++AH D + R+ ++ G T
Sbjct: 167 YSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQT 221
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 220 (82.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 66/191 (34%), Positives = 98/191 (51%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 583 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGVIDAIFTRIHSCESISLG 641
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE---AFAESGSLLT 526
LSTF L Q+ ++ +T SLVL+DE G GTN ++G AL ++L A S +
Sbjct: 642 LSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPHIF 701
Query: 527 IATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGL 582
+AT +L+ L + ME D L Y++ GV S A A + GL
Sbjct: 702 VATNFLSLVQLQLLP-QGPLVQYLTMETCEDGNDLVFFYQLCHGVASASHASYTAAQAGL 760
Query: 583 PGIVVQNARQL 593
P ++ +++
Sbjct: 761 PDPLIARGKEV 771
Score = 42 (19.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSF 69
S+ +PI K F +T+ + S + + S+ S VY+ L+ + +
Sbjct: 200 SVGVPILGFKKFVLTHLVSIDQDTYSVLQIFKSESHPS--VYKVASGLKEGLSLFGILNR 257
Query: 70 ARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE 105
R G++ L +LW T + LR L+ IE
Sbjct: 258 CRCRWGQK--LLRLWFTRPTRE--LRELNSRLDVIE 289
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 208 (78.3 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 50/116 (43%), Positives = 72/116 (62%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 246 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 304
Query: 468 QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L +Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 305 LGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 360
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 223 (83.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 66/191 (34%), Positives = 99/191 (51%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 585 RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGVIDAIFTRIHSCESISLG 643
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE---AFAESGSLLT 526
LSTF L Q+ ++ +T SLVL+DE G GTN ++G AL ++L A S +
Sbjct: 644 LSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCPHVF 703
Query: 527 IATTHHG--ELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGL 582
+AT +L+ L + ME D L Y++ GV S A + A + GL
Sbjct: 704 VATNFLSLVQLQLLP-QGPLVQYLTMETCEDGEDLVFFYQLCQGVASASHASHTAAQAGL 762
Query: 583 PGIVVQNARQL 593
P ++ +++
Sbjct: 763 PDPLIARGKEV 773
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 21/96 (21%), Positives = 40/96 (41%)
Query: 11 ISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFA 70
+ +PI K F +T+ + S + + S+ S VY+ L+ + +
Sbjct: 203 VGVPILGFKKFVLTHLVSIDQDTYSVLQIFKSESHPS--VYKVASGLKEGLSLFGILNRC 260
Query: 71 RTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
R G++ L +LW T R L E N+ +++
Sbjct: 261 RCKWGQK--LLRLWFTRPT-----RELRELNSRLDV 289
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 213 (80.0 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 62/217 (28%), Positives = 105/217 (48%)
Query: 399 VPIDIFI-ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
VP D + A +ITGPN GGK+ ++ V L +MA+ G + +S +AK+ D VF
Sbjct: 799 VPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPAS-FAKLHVLDGVF 857
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+G S+ STF L + +II +S+SLV+LDE+G GT+ +G A+ + L+
Sbjct: 858 TRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQH 917
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDF------FENACM-------EFDEVKLKPTYKIL 564
L + TH+ E+ + SN F + + + +D + YK++
Sbjct: 918 LLAEKRCLVLFVTHYPEIAEI--SNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLV 975
Query: 565 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 601
G+ RS +A+ +P ++ A + AE+
Sbjct: 976 RGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEV 1012
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 227 (85.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 67/230 (29%), Positives = 110/230 (47%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 996 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1054
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I+ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1055 SGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL 1114
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1115 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1173
Query: 578 ERLGLPGIVVQN----ARQL--YGAASAEINEVIIEMERFKTQFLEHVHE 621
LP V+Q AR+ + EV + ER T E VH+
Sbjct: 1174 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASER-STVDAEAVHK 1222
Score = 38 (18.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 369 YGGNAARKGEKDTNL----SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
Y + +KG K + +P M+ ++AH D + R+ ++ G T
Sbjct: 339 YSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQT 393
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 228 (85.3 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 57/195 (29%), Positives = 98/195 (50%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1126 KAYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1184
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I++ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1185 SGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTL 1244
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1245 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1303
Query: 578 ERLGLPGIVVQNARQ 592
LP V+Q +
Sbjct: 1304 RLANLPEEVIQKGHR 1318
Score = 38 (18.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 369 YGGNAARKGEKDTNL----SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
Y + +KG K + +P M+ ++AH D + R+ ++ G T
Sbjct: 468 YSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQT 522
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 216 (81.1 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 61/205 (29%), Positives = 103/205 (50%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
+P D + + VI+GPN GGK+ L+ L V++A+ G + +E A + D +F
Sbjct: 716 IPNDSKMGTDGTLWVISGPNMGGKSTYLRQNALIVILAQIGSFV-PAEKATIGLVDKIFT 774
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
IG L LSTF + ++ NI++ +T SL ++DEIG GT+ EG A+ + L +
Sbjct: 775 RIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEIGRGTSGKEGLAIAYATLLSL 834
Query: 519 AESGSLLTIATTHHG-ELKTLKYSND-------FFENACMEF-DEVK-LKPTYKILWGVP 568
+ T+ TH G EL+ L +N+ +F +E D K + + G+
Sbjct: 835 LQVNKCRTLFATHFGKELEQLLVANNIDQKNIRYFRTRVLENGDNEKGFVIDHTLEPGIS 894
Query: 569 GRSSAINIAERLGLPGIVVQNARQL 593
RS A+++A G P ++ A ++
Sbjct: 895 ERSHALDVARMAGFPENALKAAEKV 919
Score = 46 (21.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 84 WSINQTYQDSLRLLDETNAAIEMQKH 109
+S+ + + D L++L + + +E+++H
Sbjct: 530 YSVKRDFNDELKILHDELSELEVEEH 555
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 211 (79.3 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 64/250 (25%), Positives = 117/250 (46%)
Query: 393 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 452
+ + PV + ++ + L+ITGPN GK+ +K + L +MA+ G ++ +EY
Sbjct: 570 IAMEKPVSNNAYLTEGSNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYV-PAEYCSFRI 628
Query: 453 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512
+ +F IG + + + STF +K+I II + +SL+++DE+G GT+ EG +
Sbjct: 629 AEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICY 688
Query: 513 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV-------KLKPTYKILW 565
+ E + + T+ TH EL + EN E V K+ TY +
Sbjct: 689 AACE-YLLNLKAFTLFATHFLELCHMDALYPNVENYHFEVQHVRSSAGKEKITYTYTLSK 747
Query: 566 G-VPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH---VHE 621
G ++ + AE LP ++ +A+ A + I + I+ +R + ++H H
Sbjct: 748 GYTEEKNYGLKAAEVSSLPPSIILDAK----AITNHIAKQILHRQRTTPEMMKHRAVYHL 803
Query: 622 ARHFLMLSRN 631
A + +RN
Sbjct: 804 AMRLVQTARN 813
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 224 (83.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 57/197 (28%), Positives = 98/197 (49%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ + ++ +ITGPN GGK+ ++ G+ V+MA+ G + E A+V D +
Sbjct: 651 IPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PCESAEVSIVDCIL 709
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ +T SL+++DE+G GT+ +G L ++ E
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAIN 575
A + TH EL L N + E L Y++ GV +S I+
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 576 IAERLGLPGIVVQNARQ 592
+AE P V++ A+Q
Sbjct: 830 VAELANFPRHVIECAKQ 846
Score = 37 (18.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKM--LNGII-QLDVV 286
LN+E + + +A++ ++ E + + +E M LN ++ QLD V
Sbjct: 559 LNEEYTKNKTEYEEAQDAIV---KEIVNISSGYVEPMQTLNDVLAQLDAV 605
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 227 (85.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 67/230 (29%), Positives = 110/230 (47%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1126 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV-PAEVCRLTPIDRVFTRLGASDRIM 1184
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I+ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1185 SGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL 1244
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1245 FSTHYHSLVE-DYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1303
Query: 578 ERLGLPGIVVQN----ARQL--YGAASAEINEVIIEMERFKTQFLEHVHE 621
LP V+Q AR+ + EV + ER T E VH+
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASER-STVDAEAVHK 1352
Score = 38 (18.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 369 YGGNAARKGEKDTNL----SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
Y + +KG K + +P M+ ++AH D + R+ ++ G T
Sbjct: 469 YSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQT 523
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 224 (83.9 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 62/215 (28%), Positives = 116/215 (53%)
Query: 390 VSALELAHPVPIDIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 448
+ +L++ + +P D+ + R+ ++++ITGPN GGK+ ++ V L V+MA+ G ++ + E A
Sbjct: 770 IESLDVRY-MPNDVNLNREGKKIMIITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQE-A 827
Query: 449 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508
+ FD +F IG +L ++ STF + ++ I+ ST SL+LLDE+G GT +G
Sbjct: 828 EFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGI 887
Query: 509 ALGMSLLEAFAE--SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK----PT-- 560
++ +LL F E + L + TH+ L +++ + N M + E K P+
Sbjct: 888 SISYALLRYFIELHNACPLILFITHYASLGSIR--SPILGNYHMSYIEEKRPGENWPSVV 945
Query: 561 --YKILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
YK+ G S +N+A+ + ++ A ++
Sbjct: 946 FLYKLKEGRAHNSYGLNVAKLADIQTGIINRAYKI 980
Score = 38 (18.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 155 LQLSLRAAIKEDADLYIRFMPLTQMLYQL-MDMLIRNENNESLFLE 199
+Q SL A I D D Y + P+ L + +D + ++N + ++E
Sbjct: 559 MQSSLLANIFTDLDEYWKQFPIPNFLAMINIDAAL-DKNPDRPYVE 603
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 211 (79.3 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 61/220 (27%), Positives = 104/220 (47%)
Query: 402 DIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
DI + R +++ +ITGPN GGK+ ++ VGL V+MA+ G + ++ A + D + + +
Sbjct: 692 DIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFV-PAQKATIAVVDCILSRV 750
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G S + +STF + + I+ +T SL+++DE+G GT+ +G L + E
Sbjct: 751 GAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICN 810
Query: 521 SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT--YKILWGVPGRSSAINIAE 578
+ TH EL L +N + T YK+ G +S I++A
Sbjct: 811 QIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNTFTLLYKVEQGPCDQSFGIHVAI 870
Query: 579 RLGLPGIVVQNARQ-LYGAASAEINEVIIEMERFKTQFLE 617
P V++NA+Q S E N + +F +F E
Sbjct: 871 LANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEFKE 910
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 211 (79.3 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 84/318 (26%), Positives = 151/318 (47%)
Query: 365 RRKLYGGNAARKGEKDTNLSPS-EMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 423
R KL+ ++ R+ ++ P EMQ +++ V ++ + K L+ITGPN GGK+
Sbjct: 639 RPKLHPMDSERRTHLISSRHPVLEMQDDISFISNDVTLE---SGKGDFLIITGPNMGGKS 695
Query: 424 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 483
++ VG+ +MA+ G + E A++ D++ +G S + +STF + + +I
Sbjct: 696 TYIRQVGVISLMAQIGCFVPCEE-AEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASI 754
Query: 484 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL--KYS 541
+ ++ SL+++DE+G GT+ +G L ++ E A + TH EL L K
Sbjct: 755 LKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLP 814
Query: 542 N-------DFFENACME--FDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 592
N E E D+ + YK+ G+ +S I++AE + P +V+ A++
Sbjct: 815 NVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKR 874
Query: 593 LYGAASAEINEVIIEMERFKTQ--FLEHVHEARHFL--MLS---RNLHKNLLRTRRKILE 645
+ E++++ E K L+ V+E L +L R + + L KI E
Sbjct: 875 ----KANELDDLKTNNEDLKKAKLSLQEVNEGNIRLKALLKEWIRKVKEEGLHDPSKITE 930
Query: 646 HCASQRFRKVQKISDAAA 663
ASQ K+Q++ A A
Sbjct: 931 E-ASQH--KIQELLRAIA 945
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 218 (81.8 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 46/144 (31%), Positives = 82/144 (56%)
Query: 402 DIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
D+ + R+ + L+ITGPN GGK+ ++ +G+ +MA+ G + S A++ FDS+ A +
Sbjct: 644 DVTLTREDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSS-AELTIFDSILARV 702
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G S + +STF + + NI+ +T++SL+++DE+G GT+ +G L ++ E +
Sbjct: 703 GASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVK 762
Query: 521 SGSLLTIATTHHGELKTL--KYSN 542
+ TH EL L +Y N
Sbjct: 763 EIGCFALFATHFHELTALADQYPN 786
Score = 47 (21.6 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQ 592
YK+ G+ +S I++AE + P VV+ A++
Sbjct: 823 YKVEPGICDQSFGIHVAELVRFPDKVVRMAKR 854
Score = 40 (19.1 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 191 ENNESLFLEVSSIHGRLCIR 210
E + +FLE +HG C+R
Sbjct: 496 EREKKIFLENHKVHG-WCMR 514
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 226 (84.6 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 57/195 (29%), Positives = 97/195 (49%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ +E ++ D VF +G +
Sbjct: 1127 KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYV-PAELCRLTPVDRVFTRLGASDRIM 1185
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I+ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1186 SGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTL 1245
Query: 528 ATTHHGELKTLKYSND----------FFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 577
+TH+ L YS + EN C + + + YK + G +S N A
Sbjct: 1246 FSTHYHSLVE-DYSKNVCVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA 1304
Query: 578 ERLGLPGIVVQNARQ 592
LP V+Q +
Sbjct: 1305 RLANLPEEVIQKGHR 1319
Score = 38 (18.4 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 370 GGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
G AR + +T P M+ ++AH D + R+ ++ G T
Sbjct: 479 GYKVARVEQTET---PEMMEARCRKMAHVSKFDRVVRREICRIITKGTQT 525
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 209 (78.6 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 56/183 (30%), Positives = 91/183 (49%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
++++TGPN GK+ ++ V L ++A+ G + + A + D +F +G L+
Sbjct: 680 LIILTGPNMSGKSSFIRQVALIQLLAQVGAFV-PARGAVLGVADRIFTRVGAVDDLATGQ 738
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 530
STF + + NI++ +T +SLVLLDEIG GT +G A+ ++ E A TI T
Sbjct: 739 STFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFAT 798
Query: 531 HHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 588
H+ EL L N + E+ ++ +++ G RS I + GLP VV
Sbjct: 799 HYHELNELASVVSGVANYQVTVQELADRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVA 858
Query: 589 NAR 591
AR
Sbjct: 859 RAR 861
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 221 (82.9 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 58/201 (28%), Positives = 99/201 (49%)
Query: 399 VPIDIFIARKTR---VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 455
+P DI + + ++V+TGPN GGK+ L+ + V+MA+ G ++ +S ++ D
Sbjct: 1007 IPNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASS-CEMSIVDR 1065
Query: 456 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515
+F +G ++ STF L + ++ +T +SLV+LDE+G GT+ +G ++ S+L
Sbjct: 1066 IFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVL 1125
Query: 516 EAFAESGSLLTIATTHHGELKTLKYSNDFFENACM--EFDEVKLKPT--YKILWGVPGRS 571
A + I TH+ L D A M DE K YK+ GV S
Sbjct: 1126 NYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHVDEEAKKVIFLYKLASGVCPNS 1185
Query: 572 SAINIAERLGLPGIVVQNARQ 592
+++A GLP ++ A +
Sbjct: 1186 YGLHVASMAGLPREIITKAEE 1206
Score = 41 (19.5 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 130 EVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMLYQLMDMLIR 189
E R SP + A++ L E + +RA + +DL + +L+++L
Sbjct: 707 EFLRDSPETLQKVTAILNKLPDLERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDE 766
Query: 190 NENNESLFL 198
E ES+ L
Sbjct: 767 AEQIESIHL 775
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 210 (79.0 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 53/182 (29%), Positives = 91/182 (50%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
++TG N GK+ ++T LA+++++ G +I +E A++ D + +G ++ Q ST
Sbjct: 964 LLTGANAAGKSTLMRTTALAIILSQIGCYI-PAESAELTPVDRIMTRLGANDNILQGKST 1022
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532
F L + I+S +T +SLV+LDE+G G + +G A+ S+L A L TH+
Sbjct: 1023 FFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHY 1082
Query: 533 GEL----KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 588
G L KT ++ + YK+ G +S +N+A G+P +V
Sbjct: 1083 GTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYKLETGTAPKSFGMNVASMCGIPDAIVD 1142
Query: 589 NA 590
NA
Sbjct: 1143 NA 1144
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 215 (80.7 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 45/138 (32%), Positives = 79/138 (57%)
Query: 402 DIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
D+ + R ++ L+ITGPN GGK+ ++ +G+ +MA+ G + +E A++ FD + A +
Sbjct: 650 DVSLIRDESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTE-AELTIFDCILARV 708
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G S + +STF + + NI+ +TS+SL+++DE+G GT+ +G L ++ E
Sbjct: 709 GASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVT 768
Query: 521 SGSLLTIATTHHGELKTL 538
+ TH EL TL
Sbjct: 769 EIRCFGLFATHFHELTTL 786
Score = 50 (22.7 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 556 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 592
K+ Y++ G+ +S I++AE + P VV ARQ
Sbjct: 823 KVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQ 859
Score = 38 (18.4 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMLYQLMDMLIRNENNESLFLEVSSIHGRLCI 209
+F ++L++ + + D+Y+ + + L Q MD + LFLE ++G C
Sbjct: 469 EFDDSLRIIRKKLDQLRHDMYLEHKAVARDLDQEMD--------KKLFLENHRVYG-WCF 519
Query: 210 R 210
R
Sbjct: 520 R 520
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 218 (81.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 56/198 (28%), Positives = 99/198 (50%)
Query: 399 VPIDI-FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ F K +ITGPN GGK+ ++ G+ V+MA+ G + + A++ D +
Sbjct: 579 IPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNS-AEITIVDCIL 637
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ ++ SL+++DE+G GT+ +G L ++ E
Sbjct: 638 ARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEY 697
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFEN---ACMEFDEVKLKPTYKILWGVPGRSSAI 574
A + TH EL L N + D+ L Y++ GV +S I
Sbjct: 698 IASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDT-LTMLYRVKAGVCDQSFGI 756
Query: 575 NIAERLGLPGIVVQNARQ 592
++AE P V+++AR+
Sbjct: 757 HVAELAAFPKHVIESARE 774
Score = 39 (18.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 235 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVV 286
LSA+ N+E + R +A++ ++ + + I+ M + I QLD +
Sbjct: 484 LSAI--NEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAI 533
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 218 (81.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 56/198 (28%), Positives = 99/198 (50%)
Query: 399 VPIDI-FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P D+ F K +ITGPN GGK+ ++ G+ V+MA+ G + + A++ D +
Sbjct: 584 IPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNS-AEITIVDCIL 642
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A +G S + +STF + + +I+ ++ SL+++DE+G GT+ +G L ++ E
Sbjct: 643 ARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEY 702
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFEN---ACMEFDEVKLKPTYKILWGVPGRSSAI 574
A + TH EL L N + D+ L Y++ GV +S I
Sbjct: 703 IASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDT-LTMLYRVKAGVCDQSFGI 761
Query: 575 NIAERLGLPGIVVQNARQ 592
++AE P V+++AR+
Sbjct: 762 HVAELAAFPKHVIESARE 779
Score = 39 (18.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 235 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVV 286
LSA+ N+E + R +A++ ++ + + I+ M + I QLD +
Sbjct: 489 LSAI--NEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAI 538
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 219 (82.2 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 56/195 (28%), Positives = 103/195 (52%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D ++ + +ITGPN GK+ L+ L ++A G + +E+A + D +F+ +G
Sbjct: 601 DCDLSEGNSMSLITGPNMAGKSTFLRQNALIAVLAHIGSFV-PAEHAHIGVIDKIFSRVG 659
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
+++ STF + + I++Q+TS+SLV+LDEIG GT +G ++ ++ +E +
Sbjct: 660 ASDNIALGHSTFMVEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDV 719
Query: 522 GSLLTIATTHHGELKTLKYSNDFFENA---CMEFDEVKLKPTY--KILWGVPGRSSAINI 576
I TH+ EL L + FEN C+ +E K + + +++ G+ RS I++
Sbjct: 720 TKSRAICATHYHELPKL---SSHFENIRFFCLRIEEWKGEVVFLHELIPGISSRSYGIHV 776
Query: 577 AERLGLPGIVVQNAR 591
A G P ++ A+
Sbjct: 777 AGLAGFPKGALERAK 791
Score = 37 (18.1 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 290
L + + A++ E + L ++ + +I + +LDV+ A
Sbjct: 512 LEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLA 562
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 219 (82.2 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 57/198 (28%), Positives = 102/198 (51%)
Query: 406 ARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 464
A+K+ L ++TGPN GK+ L+ L ++A+ G + ++ A++ D +F+ +G
Sbjct: 650 AQKSGQLWLLTGPNMAGKSTFLRQNALIALLAQIGSFVPATR-ARIGIIDRLFSRVGAAD 708
Query: 465 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 524
L++ STF + + I++Q+ ++LV+LDEIG GT +G ++ + +E ES
Sbjct: 709 DLARGRSTFMVEMVETAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRC 768
Query: 525 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAERLGL 582
T+ TH+ EL L NA + E + + ++L G RS I +A+ GL
Sbjct: 769 RTLFATHYHELTALSAKLPRMFNATVRVKEWQGNVVFLHEVLPGSADRSYGIQVAKLAGL 828
Query: 583 PGIVVQNARQLYGAASAE 600
P V+ A+ + A+
Sbjct: 829 PPAVITRAKSVLAKLEAQ 846
Score = 38 (18.4 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 188 IRNENNESLFLEVSSIHG 205
IR+ N F+EV++ HG
Sbjct: 499 IRHNNVLGYFVEVTAQHG 516
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 216 (81.1 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 642
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 643 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 697
Score = 38 (18.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 SISIPIFNTKSFAITN 25
++S+PI K F +T+
Sbjct: 203 NVSVPILGFKKFMLTH 218
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 223 (83.6 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K +++TGPN GGK+ ++ GL +MA+ G ++ + + P D VF +G +
Sbjct: 1124 KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTP-VDRVFTRLGASDRIM 1182
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF L + +I+ +T+ SLVL+DE+G GT +GTA+ ++++ AE+ T+
Sbjct: 1183 SGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL 1242
Query: 528 ATTHHGEL-----KT----LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 578
+TH+ L K+ L + EN C + + + YK + G +S N A
Sbjct: 1243 FSTHYHSLVEDYSKSVCVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAAR 1302
Query: 579 RLGLPGIVVQNARQ 592
LP V+Q +
Sbjct: 1303 LANLPEEVIQKGHR 1316
Score = 38 (18.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 370 GGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
G AR + +T P M+ ++AH D + R+ ++ G T
Sbjct: 476 GYKVARVEQTET---PEMMEARCRKMAHVSKFDRVVRREICRIITKGTQT 522
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 208 (78.3 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 73/264 (27%), Positives = 120/264 (45%)
Query: 398 PVPIDIFI--ARKT------RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK 449
PVP DI + AR++ R L++TGPN GGK+ L+ LAV+ A+ G ++ E +
Sbjct: 827 PVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYV-PCESCE 885
Query: 450 VPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509
+ D++F +G + STF + +++ +T SLV+LDE+G GT+ +G A
Sbjct: 886 ISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYA 945
Query: 510 LGMSLLEAFAESGSLLTIATTHHGELK---------TLKYS-------NDFFENACMEFD 553
+ S+ E + TH+ L T K+ +D+ C + D
Sbjct: 946 IAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQ-D 1004
Query: 554 EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKT 613
V L Y++ G S + +A G+P VV+ A A I E E ++
Sbjct: 1005 LVFL---YRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSE-LRS 1060
Query: 614 QFLEHVHE--ARHFLMLSRNLHKN 635
+F +HE + + +SR H N
Sbjct: 1061 EF-SSLHEDWLKSLVGISRVAHNN 1083
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 207 (77.9 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 52/192 (27%), Positives = 96/192 (50%)
Query: 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 461
D+ + + ++TGPN GK+ L+ L ++A+ G ++ ++ A + +F+ +G
Sbjct: 616 DLSADKGAAIRLLTGPNMAGKSTYLRQNALITLLAQIGSYV-PADSAHIGVVSQLFSRVG 674
Query: 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521
L++ STF + + I++Q+ +LV+LDEIG GT +G ++ + LE +
Sbjct: 675 ASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHAT 734
Query: 522 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY--KILWGVPGRSSAINIAER 579
+ TH+ EL L + D EN + E + + + ++ G RS + +A+
Sbjct: 735 NRCRALFATHYHELTALAATLDGVENLTVAVKEWEGEVIFLHEVRKGAADRSYGVQVAQL 794
Query: 580 LGLPGIVVQNAR 591
GLP VV AR
Sbjct: 795 AGLPPSVVARAR 806
Score = 49 (22.3 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 99 ETNAAIEMQKHGSCSLDLTGVDLSLVKSAIR--EVRRASPLRPNEAL-AVVALLQFS--- 152
E ++ ++ GS L+ +D ++ R E R SP R + + A ++ L F
Sbjct: 279 ELTRSLSGERGGSL---LSVIDRTVTPGGARLLEQRLGSPSRNLDVIHARLSALDFCIDH 335
Query: 153 ETLQLSLRAAIKEDADL 169
TL LRAA+++ DL
Sbjct: 336 STLAADLRAALRKTPDL 352
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 216 (81.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 54/190 (28%), Positives = 94/190 (49%)
Query: 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 471
+++TGPN GGK+ ++ GL V++A+ G ++ + P D VF +G + S
Sbjct: 1139 VLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTP-VDRVFTRLGASDRIMSGES 1197
Query: 472 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 531
TF L + +I+ +T+ SLVLLDE+G GT +GTA+ ++++ +E T+ +TH
Sbjct: 1198 TFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTH 1257
Query: 532 HGELKT---------LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 582
+ L L + EN C + + + YK + G +S N A +
Sbjct: 1258 YHSLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANI 1317
Query: 583 PGIVVQNARQ 592
P V+Q+ +
Sbjct: 1318 PEDVIQSGHK 1327
Score = 44 (20.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 370 GGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 419
G AR + +T P M+ +LA P D + R+ ++ G T
Sbjct: 476 GYKVARVEQTET---PDMMEARCKKLARPTKFDKVVKREVCRIITRGTQT 522
Score = 37 (18.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 177 TQMLYQLMDMLIRNENNESLFLEVS 201
+++L Q++ L++ EN + LF ++S
Sbjct: 885 SKLLRQVV--LLKTENEDGLFPDLS 907
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 216 (81.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 50/115 (43%), Positives = 71/115 (61%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 601 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 659
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 660 LGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 714
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 SISIPIFNTKSFAITN 25
++S+PI K F +T+
Sbjct: 220 NVSVPILGFKKFMLTH 235
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 206 (77.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/187 (26%), Positives = 98/187 (52%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
++++TGPN GGK+ L+ + ++A+ G ++ ++ ++ D +F IG L
Sbjct: 998 LILLTGPNMGGKSTTLRMACVMAILAQIGCYV-PAKSLRMTLVDRIFTRIGASDKLMDGK 1056
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIAT 529
STF +++ N + Q + SL+++DE+G GT+ +G A+ S++ E+ S AT
Sbjct: 1057 STFFIEMEETSNAVKQGSKHSLIIMDELGRGTSTFDGVAIAYSIVRYLVENLQSRCLFAT 1116
Query: 530 THHGELKTLKYSND--FFENACMEFDEVKLKPT--YKILWGVPGRSSAINIAERLGLPGI 585
+H L ++ ++ AC DE + K Y++ G S IN+A+ +G+
Sbjct: 1117 HYHVLLDEFRHYPQIAYYHMAC-HVDEKRSKVIFLYRLKAGECSSSFGINVAKVVGISDN 1175
Query: 586 VVQNARQ 592
+++ A+Q
Sbjct: 1176 LIEIAKQ 1182
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 215 (80.7 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 60/201 (29%), Positives = 100/201 (49%)
Query: 399 VPIDIFI--ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV 456
VP ++ I A K +++TGPN GGK+ L+ V LAV++A+ G + + + P D +
Sbjct: 1064 VPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSP-VDKI 1122
Query: 457 FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516
+G + + STF L + +++ +T SLV+LDE+G GT +G A+ S+LE
Sbjct: 1123 CVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLE 1182
Query: 517 AFAESGSLLTIATTHHGELKTLKYSN---DFFENACMEFDEV----KLKPTYKILWGVPG 569
F E +TH+ L +N AC + + ++ Y++ G
Sbjct: 1183 HFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACP 1242
Query: 570 RSSAINIAERLGLPGIVVQNA 590
+S +N+A GLP V+Q A
Sbjct: 1243 KSYGVNVARLAGLPDYVLQRA 1263
Score = 40 (19.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 298
EL QA++ A + + L + ++ ++++ +LDV+ + A S S+ G
Sbjct: 970 ELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEG 1025
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 213 (80.0 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 65/250 (26%), Positives = 115/250 (46%)
Query: 357 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR-KTRVLVIT 415
++ N E RR L + AR K P + A + +P D+ + + +L+IT
Sbjct: 665 DTPNFEEIRRTLENNHCARLYLKQAR-HPC---LEAQDDVKFIPNDVNLEHGSSELLIIT 720
Query: 416 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475
GPN GGK+ ++ VG+ +MA+ G + E A + D++ A +G S + +STF
Sbjct: 721 GPNMGGKSTYIRQVGVITVMAQIGCPV-PCEVADLDIIDAILARVGASDSQLKGISTFMA 779
Query: 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535
+ + I+ +T +SL+++DE+G GT+ +G L ++ E + TH+ E+
Sbjct: 780 EMLETATILRAATPRSLIIIDELGRGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEM 839
Query: 536 KTLKYSNDFFEN----ACMEFDEVK-LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590
L +N A + E K + Y + G RS I++A+ P +++ A
Sbjct: 840 TKLSEEITTVKNLHVTAYVGDSESKDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMA 899
Query: 591 RQLYGAASAE 600
AE
Sbjct: 900 SNKAAELEAE 909
Score = 38 (18.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 232 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVD 269
++ L + +++ Q++ A + VLLA+T +++ D
Sbjct: 118 MQMLEDLLVSENYQESTAISDSSVSSVLLAVTTRVKQD 155
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 215 (80.7 bits), Expect = 4.9e-12, Sum P(3) = 4.9e-12
Identities = 45/138 (32%), Positives = 79/138 (57%)
Query: 402 DIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460
D+ + R ++ L+ITGPN GGK+ ++ +G+ +MA+ G + +E A++ FD + A +
Sbjct: 650 DVSLIRDESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTE-AELTIFDCILARV 708
Query: 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
G S + +STF + + NI+ +TS+SL+++DE+G GT+ +G L ++ E
Sbjct: 709 GASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVT 768
Query: 521 SGSLLTIATTHHGELKTL 538
+ TH EL TL
Sbjct: 769 EIRCFGLFATHFHELTTL 786
Score = 50 (22.7 bits), Expect = 4.9e-12, Sum P(3) = 4.9e-12
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 556 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 592
K+ Y++ G+ +S I++AE + P VV ARQ
Sbjct: 823 KVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQ 859
Score = 38 (18.4 bits), Expect = 4.9e-12, Sum P(3) = 4.9e-12
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMLYQLMDMLIRNENNESLFLEVSSIHGRLCI 209
+F ++L++ + + D+Y+ + + L Q MD + LFLE ++G C
Sbjct: 469 EFDDSLRIIRKKLDQLRHDMYLEHKAVARDLDQEMD--------KKLFLENHRVYG-WCF 519
Query: 210 R 210
R
Sbjct: 520 R 520
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 208 (78.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 50/116 (43%), Positives = 72/116 (62%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 642
Query: 468 QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L +Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 643 LGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 698
Score = 38 (18.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 SISIPIFNTKSFAITN 25
++S+PI K F +T+
Sbjct: 203 NVSVPILGFKKFMLTH 218
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 208 (78.3 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 50/116 (43%), Positives = 72/116 (62%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K RV VITGPN+ GK+I LK VGL MA G + + E A++ D++F I +S+S
Sbjct: 601 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE-AEIGAVDAIFTRIHSCESIS 659
Query: 468 QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
LSTF L +Q+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 660 LGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 715
Score = 38 (18.4 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 SISIPIFNTKSFAITN 25
++S+PI K F +T+
Sbjct: 220 NVSVPILGFKKFMLTH 235
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 211 (79.3 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 64/237 (27%), Positives = 119/237 (50%)
Query: 378 EKDTNLSPSEMQ---VSALELAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAV 433
+KD +L E++ ++A + VP D+ + ++ ++V+TGPN GK+ L+ V +AV
Sbjct: 982 QKDGHLYFEELRHPCINASAASTFVPNDVVLGGESPNMIVLTGPNMAGKSTLLRQVCIAV 1041
Query: 434 MMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLV 493
+MA+ G + + + P S++ +G + + STF L + I+ + +SLV
Sbjct: 1042 IMAQLGCWVPAKRASITP-MTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLV 1100
Query: 494 LLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT--LKYSNDFFENACME 551
+LDE+G GT+ +G A+ ++L + L +TH+ L + +
Sbjct: 1101 ILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAA 1160
Query: 552 FDEVKLKPT--YKILWGVPGRSSAINIAERLGLPGIVV----QNARQLYGAASAEIN 602
DE + T YK+ G+ +S +N+A GLP V+ + A +L A+++ IN
Sbjct: 1161 VDEKIRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFIN 1217
Score = 39 (18.8 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 131 VRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+ R+SP RP+++L E+ LR ++K++ D
Sbjct: 112 LHRSSPKRPHDSLG-------EESPGKLLRTSVKQEPD 142
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 204 (76.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 70/269 (26%), Positives = 130/269 (48%)
Query: 393 LELAHP--VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 450
LE H V IF++ T +LV+ GPN GK+ L+ V L V++A+ G ++ + +A +
Sbjct: 528 LESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYV-PARFATI 586
Query: 451 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510
D +F +G +L + STF +++ I+ T++SL+++DE+G T+ +G A+
Sbjct: 587 RVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAM 646
Query: 511 GMSLLEAFAESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDEVKLKPTYKILWG-- 566
S E + S T+ TH L L Y N + ++ + +L +++ G
Sbjct: 647 AWSCCE-YLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGTL 705
Query: 567 -VPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE-ARH 624
VP + +AE GLP V+ AR + + + N+ I E+ K + ++ A+
Sbjct: 706 HVP--HYGLLLAEVAGLPSTVIDTARIITKRITDKENKRI-ELNCGKHHEIHRIYRVAQR 762
Query: 625 FLML--SRNLHKNLLRTRRKILEHCASQR 651
+ L SR ++ + + + E +R
Sbjct: 763 LICLKYSRQTEDSIRQALQNLNESFTEER 791
Score = 40 (19.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 249 ASVTKAEEDVLLALTEKMQVDLDE---IEKMLNGIIQLDVVNARATY 292
A V K + LLA K + D I K + +I DV++AR +
Sbjct: 304 AKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPF 350
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 210 (79.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 57/192 (29%), Positives = 96/192 (50%)
Query: 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 471
++ITGPN GGK+ L+ L V+MA+ G + ++ + FD+++ +G S+ S
Sbjct: 1175 MIITGPNMGGKSSLLRQTALIVIMAQVGCFVPATS-CSLSVFDAIYTRMGARDSIGTGKS 1233
Query: 472 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 531
TF L++ +I+ ST +LV+LDE+G GT+ +G A+ S L+ E + TH
Sbjct: 1234 TFFIELEETSDILKNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTH 1293
Query: 532 HGELKTLKYS-----NDFFENACMEFDEVKLKPT--------YKILWGVPGRSSAINIAE 578
+ L L+ +F E + +L+ + YK++ G S +NIA
Sbjct: 1294 YPLLAQLELQYPTQVGNFHMGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIAR 1353
Query: 579 RLGLPGIVVQNA 590
GLP V+ +A
Sbjct: 1354 LAGLPMEVIADA 1365
Score = 40 (19.1 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 301 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPK 335
P + LP+ K L E T+ +SS ++ + PK
Sbjct: 2 PRLKLPKSFKDELESEKTTT--TSSRKKAPVVDPK 34
Score = 38 (18.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 244 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 301
L Q+R ++ ++ ++ + VD +N I LD + + A S G P
Sbjct: 1071 LSQSRETLKIQSQESWISFLGEFSVDYSLFSNFVNKISNLDCLFSLAKVSSLEGYIRP 1128
Score = 38 (18.4 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 370 GGNAARKGEKDTNLSPSEMQVSALELAHP 398
GG+ A +K +P E Q A++ +P
Sbjct: 440 GGSKASAKKKGPAYTPLEQQYIAIKKENP 468
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 191 (72.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 52/190 (27%), Positives = 94/190 (49%)
Query: 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 471
L++TGPN GGK+ ++ LA+++A+ G ++ + ++ D++F IG + S
Sbjct: 968 LLLTGPNMGGKSTIMRATCLAIVLAQLGCYV-PCQSCELTLADAIFTRIGAMDRIMSGES 1026
Query: 472 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 531
TF + +I+ +T SLVLLDE+G GT+ +G A+ ++ E+ + TH
Sbjct: 1027 TFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATH 1086
Query: 532 HGELKTLKYSND----FFENACM-------EFDEVKLKPTYKILWGVPGRSSAINIAERL 580
+ L T ++++ ACM + E +L Y++ G S + +A
Sbjct: 1087 YHPL-TKEFASHPHVTLQHMACMLKPRNGGDGGEKELTFLYRLTSGACPESYGLQVATMA 1145
Query: 581 GLPGIVVQNA 590
GLP +V+ A
Sbjct: 1146 GLPRSIVERA 1155
Score = 55 (24.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 250 SVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS--PNIFL 305
SV + + L L + + E ++N + +DV+ + A +LS GT+ PNI L
Sbjct: 867 SVKDDDANTLAMLVDLLVGKASEWSLVINALSTIDVLRSFAAMALSSFGTTCRPNILL 924
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 191 (72.3 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 56/197 (28%), Positives = 100/197 (50%)
Query: 399 VPIDIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P DI + + ++TG N GK+ L+ +AV+MA+ G + L A++ D +
Sbjct: 924 IPNDIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCY-LPCRSARLTPVDRIM 982
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+ +G ++ + STF L + I+S++T +SLV+LDE+G GT+ +G A+ ++L
Sbjct: 983 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1042
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPT--YKILWGVPGRSSA 573
A L TH+ L ++ + M+ DE + + T YK+ GV S
Sbjct: 1043 VATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDENERRVTFLYKLEDGVAEGSFG 1102
Query: 574 INIAERLGLPGIVVQNA 590
++ A G+P V++ A
Sbjct: 1103 MHCAAMCGIPNKVIERA 1119
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 191 (72.3 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 56/197 (28%), Positives = 100/197 (50%)
Query: 399 VPIDIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P DI + + ++TG N GK+ L+ +AV+MA+ G + L A++ D +
Sbjct: 924 IPNDIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCY-LPCRSARLTPVDRIM 982
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+ +G ++ + STF L + I+S++T +SLV+LDE+G GT+ +G A+ ++L
Sbjct: 983 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1042
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPT--YKILWGVPGRSSA 573
A L TH+ L ++ + M+ DE + + T YK+ GV S
Sbjct: 1043 VATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDENERRVTFLYKLEDGVAEGSFG 1102
Query: 574 INIAERLGLPGIVVQNA 590
++ A G+P V++ A
Sbjct: 1103 MHCAAMCGIPNKVIERA 1119
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 190 (71.9 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 54/198 (27%), Positives = 97/198 (48%)
Query: 399 VPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P DI + ++ R+ ++TG N GK+ L+ +AV+MA+ G ++ P D +
Sbjct: 964 IPNDIELGKEQPRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTP-IDRIM 1022
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+G ++ Q STF L + I+ +T++SL+++DE+G G + +G A+ S+L
Sbjct: 1023 TRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHH 1082
Query: 518 FAESGSLLTIATTHHGEL-KTLKYSNDFFE-NACMEFDEVKLKPT--YKILWGVPGRSSA 573
A L TH+G L + K+ + DE T YK+L G S
Sbjct: 1083 VATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRNVTFLYKMLEGQSEGSFG 1142
Query: 574 INIAERLGLPGIVVQNAR 591
+++A G+ ++ NA+
Sbjct: 1143 MHVASMCGISKEIIDNAQ 1160
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 181 (68.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 50/188 (26%), Positives = 105/188 (55%)
Query: 409 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 468
+R+ VITG N GK++ L+ + V+MA+ G + +EYA++ F+S+++ I + ++
Sbjct: 550 SRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFV-PAEYARMRIFNSLYSRISSD-NVDI 607
Query: 469 SLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE-AFAESGSLLTI 527
+ S+FS + + I++ S SL+L+DE+G G++ +G ++ +++LE + +++T
Sbjct: 608 NASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLICKEATVIT- 666
Query: 528 ATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSS-AINIAERLGL-P 583
TTH ++ + + A M+ E +L+ Y ++ G G I AE L P
Sbjct: 667 -TTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVLGRNGIVGYGIRFAEVSNLLP 725
Query: 584 GIVVQNAR 591
++++++
Sbjct: 726 QELIEDSK 733
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 17 NTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGR 76
+TK F +TNK R C + D+ + + +SL E +S + T +G
Sbjct: 171 STKMFRVTNKIRLKYCMCENTMLIDTCTVRDLELVDSLS--ETGTTLYSFLNCCLTKMGM 228
Query: 77 EATLTQLWSINQTYQDSLRLLDET 100
T + + T+++S+ L E+
Sbjct: 229 RILRTSILQPS-THENSIILRSES 251
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 184 (69.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
+ ++TGPN GGK+ L+ + V++A+ G ++ + A + D +F+ +G L +
Sbjct: 760 IWIVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCAS-AHIGLVDKIFSRVGSADDLYNDM 818
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 530
STF + + ++ +T +SL +LDEIG GTN +G + + L + +
Sbjct: 819 STFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKNRCRALFAS 878
Query: 531 HHG-ELKTLKYSN---------DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL 580
H G EL L + F+ E + +KI G+ S AI +A+
Sbjct: 879 HFGRELSELVEQHLPPGARKRVHFYRTNVREHNGRSFYD-HKITPGICLSSDAIRVAQMA 937
Query: 581 GLPGIVVQNARQLYGAAS 598
G P + AR++ A++
Sbjct: 938 GFPQEALDVARRVLAAST 955
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 186 (70.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 53/198 (26%), Positives = 100/198 (50%)
Query: 399 VPIDIFIARK-TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P DI + + ++TG N GK+ L+ +AV+MA+ G ++ + P D +
Sbjct: 960 IPNDIKLGGDDANINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPAVSARLTP-VDRIM 1018
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+ +G ++ + STF L + I+S++T +SLV+LDE+G GT+ +G A+ ++L
Sbjct: 1019 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1078
Query: 518 FAESGSLLTIATTHHGELKTLKYSND---FFENACMEFDEVKLKPT--YKILWGVPGRSS 572
A + TH+ L T ++ N + ++ D+ K + T Y++ GV S
Sbjct: 1079 VASHIGCVGFFATHYHSLAT-EFENHPEIRAKRMQIQVDDAKRRVTFLYRLEDGVAEGSF 1137
Query: 573 AINIAERLGLPGIVVQNA 590
++ A G+ V++ A
Sbjct: 1138 GMHCAAMCGISDRVIERA 1155
Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 300
ELQ+A + ++ +DV ++ VD + + I QLD + A S S G S
Sbjct: 872 ELQEAEETHSQIVKDVAARFFKRFDVDYAIWIQAIRIISQLDCLICLAKASSSLGEPS 929
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 190 (71.9 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 65/207 (31%), Positives = 97/207 (46%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
VP D I R+ +ITGPN GK+I +K V L V +A G + ++ A V D +F
Sbjct: 555 VPNDTKIRSSGRINIITGPNYSGKSIYIKQVALVVFLAHIGSFV-PADSAIVGLTDRIFC 613
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G + S++ STF L Q+G ++ +TS+SL LLDE G GT +G L + F
Sbjct: 614 AMGSK-SMTSEQSTFMIDLHQVGTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHF 672
Query: 519 AESGSL-LTIATTHHGELKTLKYSNDFFENACMEF-----DEVKLKPTYKILWG-VPGR- 570
+ + +TH ++ T Y C DE L+ VPG+
Sbjct: 673 TDYDCPPKVLLSTHLTQIFTESYLPQSEHIKCYTMSVLNPDEQTDNEDVIFLYRLVPGQA 732
Query: 571 --SSAINIAERLGLPGIVVQNARQLYG 595
S ++ A+ G+P VVQ A + G
Sbjct: 733 LLSFGLHCAQLAGVPSEVVQRAVTVLG 759
Score = 37 (18.1 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 277 LNGIIQLDVVNARATYSLSF 296
L II +DV+N R ++SF
Sbjct: 241 LRPIIDIDVINNRLN-TISF 259
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 189 (71.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 54/197 (27%), Positives = 99/197 (50%)
Query: 399 VPIDIFIAR-KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
+P DI + + + ++TG N GK+ L+ +AV+MA+ G ++ + P D +
Sbjct: 979 IPNDIKLGGDEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARLTP-VDRIM 1037
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
+ +G ++ + STF L + I+S++T +SLV+LDE+G GT+ +G A+ ++L
Sbjct: 1038 SRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH 1097
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEF--DEVKLKPT--YKILWGVPGRSSA 573
A + TH+ L T ++ M+ DE + T YK+ GV S
Sbjct: 1098 VASHIGCVGFFATHYHSLATEFENHPEIRARRMQIAVDEENKRITFLYKLEDGVAEGSFG 1157
Query: 574 INIAERLGLPGIVVQNA 590
++ A G+P V++ +
Sbjct: 1158 MHCAAMCGIPDKVIRRS 1174
Score = 42 (19.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 297
ELQ+A + ++ ++V ++ +D + + + I QLD + + A S + G
Sbjct: 891 ELQEAEETHSQIVKEVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASSALG 945
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 177 (67.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 51/195 (26%), Positives = 94/195 (48%)
Query: 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS 465
A + V+++TGPN GGK+ ++ + ++A G + + P D +F IG
Sbjct: 952 ASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTP-IDRIFTRIGANDR 1010
Query: 466 LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL 525
+ STF LK+ ++ +T SL+L+DE+G GT+ +GTA+ ++L+ ++ +
Sbjct: 1011 IMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACR 1070
Query: 526 TIATTHHGEL--KTLKYSNDFFENA-CMEFDEVKLKPT-------YKILWGVPGRSSAIN 575
T +TH+ + + N + C+ E PT Y++ G+ +S
Sbjct: 1071 TFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFY 1130
Query: 576 IAERLGLPGIVVQNA 590
A+ G+ VV+NA
Sbjct: 1131 AAKLAGIDHQVVRNA 1145
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 177 (67.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 51/195 (26%), Positives = 94/195 (48%)
Query: 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS 465
A + V+++TGPN GGK+ ++ + ++A G + + P D +F IG
Sbjct: 952 ASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTP-IDRIFTRIGANDR 1010
Query: 466 LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL 525
+ STF LK+ ++ +T SL+L+DE+G GT+ +GTA+ ++L+ ++ +
Sbjct: 1011 IMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACR 1070
Query: 526 TIATTHHGEL--KTLKYSNDFFENA-CMEFDEVKLKPT-------YKILWGVPGRSSAIN 575
T +TH+ + + N + C+ E PT Y++ G+ +S
Sbjct: 1071 TFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFY 1130
Query: 576 IAERLGLPGIVVQNA 590
A+ G+ VV+NA
Sbjct: 1131 AAKLAGIDHQVVRNA 1145
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 183 (69.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 38/106 (35%), Positives = 66/106 (62%)
Query: 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469
R ++ITGPN GGK+ ++ V L +MA+ G + + E A V D ++ +G ++S+
Sbjct: 846 RAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPARE-ASVGIVDGIYVRMGASDNISRG 904
Query: 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515
STF L + ++++ +TS+SLV+LDE+G GT+ +G A+ + L
Sbjct: 905 RSTFMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIAYATL 950
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 231 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGI 280
V +PL +V Q+A A + +E VL ++ + + L ++E+ L I
Sbjct: 539 VSQPLKSVIDIQARQEAVAEILSSESSVLPSI-QSLLTRLPDLERGLCSI 587
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 178 (67.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 59/249 (23%), Positives = 120/249 (48%)
Query: 369 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI----FIARKT-------RVLVITGP 417
+G AA+ G L E + A+EL HP+ + + F+ + + +ITGP
Sbjct: 582 FGLIAAQNGWNCPALV-DEPVIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGP 640
Query: 418 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 477
N GK++ +K++G+ V ++ G + + +AK+ D + + S+ +STF+ +
Sbjct: 641 NACGKSVYMKSIGIMVFLSHIGSFV-PARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDV 699
Query: 478 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS----LLTIATTHHG 533
+Q+ + ++T SLV++DE G GT G +L S++ + G+ + +++ H
Sbjct: 700 EQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHA 759
Query: 534 ELKTLKYSND---FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590
+ + F + K+K +++ G+ S A+++A+ G+P V+ A
Sbjct: 760 LPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRA 819
Query: 591 RQLYGAASA 599
++Y A A
Sbjct: 820 CRIYKALKA 828
Score = 45 (20.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 731 TASSSVVKDI-KQSPRVKRTELPNVGDLVHVSSF 763
+AS SV ++ K++P VK +++ + +SSF
Sbjct: 1033 SASKSVRTEVFKKTPNVKESQVLETPKQLSISSF 1066
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 178 (67.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 59/249 (23%), Positives = 120/249 (48%)
Query: 369 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI----FIARKT-------RVLVITGP 417
+G AA+ G L E + A+EL HP+ + + F+ + + +ITGP
Sbjct: 582 FGLIAAQNGWNCPALV-DEPVIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGP 640
Query: 418 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 477
N GK++ +K++G+ V ++ G + + +AK+ D + + S+ +STF+ +
Sbjct: 641 NACGKSVYMKSIGIMVFLSHIGSFV-PARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDV 699
Query: 478 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS----LLTIATTHHG 533
+Q+ + ++T SLV++DE G GT G +L S++ + G+ + +++ H
Sbjct: 700 EQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHA 759
Query: 534 ELKTLKYSND---FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590
+ + F + K+K +++ G+ S A+++A+ G+P V+ A
Sbjct: 760 LPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRA 819
Query: 591 RQLYGAASA 599
++Y A A
Sbjct: 820 CRIYKALKA 828
Score = 45 (20.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 731 TASSSVVKDI-KQSPRVKRTELPNVGDLVHVSSF 763
+AS SV ++ K++P VK +++ + +SSF
Sbjct: 1033 SASKSVRTEVFKKTPNVKESQVLETPKQLSISSF 1066
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 176 (67.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 64/227 (28%), Positives = 106/227 (46%)
Query: 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458
+P D I R+ +ITGPN GK+I +K V L V ++ G + ++ A V D +F
Sbjct: 552 IPNDTEINDNGRIHIITGPNYSGKSIYVKQVALIVFLSHIGSFV-PADAATVGLTDRIFC 610
Query: 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518
+G + ++ STF L Q+G ++ Q+TS+SL LLDE G GT +G L + F
Sbjct: 611 AMGSKFMTAEQ-STFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHF 669
Query: 519 AESGSL-LTIATTHHGEL---KTLKYSND--FFENACMEFD--EVKLKPTYKILWGVPGR 570
A + TH EL L S F+ + + D ++ + +PG+
Sbjct: 670 ATCAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVLRPDTESANMEEIVFLYRLIPGQ 729
Query: 571 ---SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 614
S ++ A G+P VV+ A + A + N + +++ +Q
Sbjct: 730 TLLSYGLHCALLAGVPEEVVKRAAIVLDAFESNNNVDKLSLDKISSQ 776
Score = 40 (19.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/82 (25%), Positives = 31/82 (37%)
Query: 38 AVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLL 97
A SD D + R Y + + E D L + + + A + L ++ T S LL
Sbjct: 444 AFSDMDGETQRFFYHTSKTRELDNLLGDI--YHKILDMERAIIRDL--LSHTLLFSAHLL 499
Query: 98 DETNAAIEMQKHGSCSLDLTGV 119
N E+ C L L V
Sbjct: 500 KAVNFVAELD----CILSLACV 517
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 179 (68.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 40/123 (32%), Positives = 71/123 (57%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
+ITGPN GGK+ + V L V++A+ G + ++ + + D++F +G +L + ST
Sbjct: 879 LITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMS-LTLSDAIFTRMGARDNLFKGEST 937
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532
F + + I+ Q+T +SLV+LDE+G GT+ +G A+ ++LE L + TH+
Sbjct: 938 FMVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHY 997
Query: 533 GEL 535
+L
Sbjct: 998 QDL 1000
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 373 AARKGEKDTNLSPSEMQVSALELAH 397
A +KG K L+P E+Q ++ H
Sbjct: 176 AKKKGAKTGKLTPMELQFLEIKRKH 200
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 553 DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 601
+E ++ Y + GV RS +N+A +P V++ A + E+
Sbjct: 1058 EEEEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELEKEV 1106
Score = 37 (18.1 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 243 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 292
EL Q + + LL LTE + EK+ GII + Y
Sbjct: 315 ELDQPGETTGASSGGYLLCLTETPAKGMGTDEKVNVGIIAVQPATGDIIY 364
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 183 (69.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 48/140 (34%), Positives = 77/140 (55%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
V++++GPN GK+I +K V L V + + G ++ ++ A + FD ++ I +S + S
Sbjct: 591 VVIVSGPNQSGKSIYIKQVALIVFLGQIGSYV-PAKSATISLFDHIYTRISSRESNAISE 649
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE-AFAESGSL-LTIA 528
S+F KQI + +TS+SL+++DE G GTNPL+G +L LL +S S T
Sbjct: 650 SSFMIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFI 709
Query: 529 TTHHGEL-KTLKYSNDFFEN 547
TH E + + S D N
Sbjct: 710 CTHFYEFFELISNSTDSIFN 729
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 174 MPLTQMLYQLMDMLIRN--ENNESLFLEVSSIHGRLCIRTGADQ 215
+P + L L + N + ES+F R+ IR G D+
Sbjct: 361 LPFLKKLNNLYPQSLVNIYQKFESIFFFADQDDQRISIREGVDE 404
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 559 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
P YK+ G+ S I A+ G+ VV A ++
Sbjct: 790 PFYKLKEGISSSSFGILCAKIAGVNENVVNRAYEI 824
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/191 (28%), Positives = 101/191 (52%)
Query: 400 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 459
P+D FI + V++ITG N GKT L+T+G+A +++ +G + +S+++ +P +
Sbjct: 427 PLD-FIEEQN-VVLITGSNMSGKTTYLRTIGVASILSMAGGPVPASKFS-LPVL-KIHTS 482
Query: 460 IGDEQSLSQSLSTFSGHLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLE 516
+ +E +L + +S F ++++ I+ + S LVLLDEI GTN E + +L+
Sbjct: 483 MRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSSHLVLLDEILKGTNTRERSLACKGILK 542
Query: 517 AFAESGSLLTIATTHHGELKT-----LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 571
++ +++ + T+H EL LK+ + + M FD YKI G+ S
Sbjct: 543 ELKKNRTIVFV-TSHDLELAKVEGVILKHFQEEVLDGTMYFD-------YKIREGLVETS 594
Query: 572 SAINIAERLGL 582
+A+ I + GL
Sbjct: 595 NALRILVQEGL 605
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 146 (56.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 51/189 (26%), Positives = 85/189 (44%)
Query: 433 VMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSL 492
++ K G ++ +E + D +F IG L + STF ++++ N I T S+
Sbjct: 938 ILQLKQGCYV-PAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSI 996
Query: 493 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH----GELKTLKYSNDFFENA 548
+ DE+G GT+ +G A+ +L+ F E I TH EL+ K + +
Sbjct: 997 AIFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKEISFYHMEY 1056
Query: 549 CMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA--RQLYGAASAEINEVII 606
+ KL YK+ G S I++A+ +G+ V+ A +QL S E EV
Sbjct: 1057 YYDNKSKKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENSLEYAEV-- 1114
Query: 607 EMERFKTQF 615
E ++ QF
Sbjct: 1115 EKQQTIKQF 1123
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 399 VPIDIFIAR------KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 450
VP DI + + ++++TGPN GGK+ L+ L+ ++A+ G++ + + K+
Sbjct: 880 VPNDIILGNIAGMNAQPNIMILTGPNMGGKSTTLRLFCLSAILAQIGIYFRNYQNFKL 937
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 181 (68.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 41/117 (35%), Positives = 69/117 (58%)
Query: 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
+ +ITGPN GK+ L+ L ++A+ G ++ ++YA++ D++F+ +G +L
Sbjct: 978 IWLITGPNMAGKSTFLRQNALITILAQMGCYV-PADYAELGIVDAIFSRVGSADNLYADQ 1036
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 527
STF + + I+ Q+T +S V++DEIG GT P +GTA+ AFA LLT+
Sbjct: 1037 STFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAV------AFASLHHLLTV 1087
Score = 45 (20.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
+K+ G+ +S A+ +A GLP ++ A+Q+
Sbjct: 1144 HKLRKGMNRQSHALKVARLAGLPEPAIKIAQQV 1176
Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 2 PLWAAFGDSI 11
PLW + G+S+
Sbjct: 858 PLWTSLGESL 867
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 169 (64.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 42/129 (32%), Positives = 75/129 (58%)
Query: 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 467
K R++V+TG N GK++ L GL V +A+ G + +E A++ D + I ++++
Sbjct: 635 KGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFV-PAERARIGIADKILTRIRTQETVY 693
Query: 468 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL-LT 526
++ S+F +Q+ +S +T +SL+L+DE G GT+ L+G +L S++ ++S
Sbjct: 694 KTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRI 753
Query: 527 IATTHHGEL 535
IA TH EL
Sbjct: 754 IACTHFHEL 762
Score = 40 (19.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNARQL 593
+K+ G+ +S I A+ GL +V+ A +L
Sbjct: 809 FKVKEGISKQSFGIYCAKVCGLSRDIVERAEEL 841
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 157 (60.3 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 42/131 (32%), Positives = 69/131 (52%)
Query: 412 LVITGPNTGGKTICLKTVGLAV-MMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 470
LV+ GP+ G + K + L ++A L ++ +E + + D F +G ++ +
Sbjct: 880 LVLVGPSRGIRGNFFKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGR 939
Query: 471 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 530
STF L II ++TSQSLV+LDE+G GT+ +G A+ + LE F LT+ T
Sbjct: 940 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVT 999
Query: 531 HHGELKTLKYS 541
H+ + L+ S
Sbjct: 1000 HYPPVCELEKS 1010
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 VTKAEEDVLLALTEKMQVDLDEIEKML 277
V K +D + +T K+Q L EI K+L
Sbjct: 699 VIKKRKDEIQEVTNKIQTHLQEIRKIL 725
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNA 590
Y+I G RS +N+A+ +PG +++ A
Sbjct: 1047 YQITRGSAARSYGLNVAKLADVPGEILKKA 1076
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 172 (65.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 37/123 (30%), Positives = 71/123 (57%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 472
++TGPN GGK+ ++ + L V++A+ G + ++ ++ D+++ +G +L ST
Sbjct: 910 LVTGPNMGGKSSFVRALALLVLLAQVGSFV-PADSLRLTLSDAIYTRMGASDNLFAGEST 968
Query: 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532
F + + I+ +T +SLVLLDE+G GT+ +G A+ ++L+ + LT+ TH+
Sbjct: 969 FMVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLDHVVRNTRCLTLFITHY 1028
Query: 533 GEL 535
L
Sbjct: 1029 QSL 1031
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 371 GNAARKGEKDTNLSPSEMQVSALELAHPVP 400
GNA R GE++T E A E P P
Sbjct: 185 GNAGR-GEQETGAQEEEEDGDAAEEEPPPP 213
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 375 RKGEKDTNLSPSEMQVSALELAH 397
+KG K L+P E+Q ++ H
Sbjct: 218 KKGAKSGKLTPMELQFLEIKRKH 240
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 561 YKILWGVPGRSSAINIAERLGLPGIVVQNA 590
Y++ GV RS +N+A +P +++ A
Sbjct: 1076 YEVADGVAHRSYGLNVARLARIPRKILEVA 1105
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 131 (51.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 415 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474
+GPN GGK+ L+ LA ++A+ G + + P DS+F +G S+ STF
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSP-VDSLFVRMGARDSIMTGQSTFF 59
Query: 475 GHLKQIGNIISQSTSQSLVLLDEIGAG 501
L + +++++T SLV+LDE+G G
Sbjct: 60 IELAETAAMLARATPDSLVVLDELGRG 86
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 149 (57.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 50/213 (23%), Positives = 103/213 (48%)
Query: 399 VPIDIFIARKTRVL-VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 457
VP I + + L +ITG N GK++ LK V L +MA+ G I + Y P F +
Sbjct: 616 VPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMAQMGSGI-PALYGSFPVFKRLH 674
Query: 458 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517
A + ++ S+ + S F +K++ + +++L++LDE+G G++ +G + +++ E
Sbjct: 675 ARVCND-SMELTSSNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEH 733
Query: 518 FAESGSLLTIATTHHGELKTLKYSNDFFENACME---FDEVKLKPTYKILW-GVPGRSSA 573
+ + + ++T H ++ + + M+ ++ +K Y++ V +S
Sbjct: 734 LLRTEATVFLST-HFQDIPKIMSKKPAVSHLHMDAVLLNDNSVKMNYQLTQKSVAIENSG 792
Query: 574 INIAERLGLPGIVVQ--NARQLYGAASAEI-NE 603
I + +++ P I+ + N L A A NE
Sbjct: 793 IRVVKKIFNPDIIAEAYNIHSLLKIAKARTENE 825
Score = 58 (25.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 235 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 294
L+ + N L++ + E+ + L +K+ + E+ + + LD+V TY+L
Sbjct: 526 LNIIKKNARLKEVMEEILLLSEETVDELLDKIATHISELFMIAEAVAILDLV-CSFTYNL 584
Query: 295 SFGGTSPNIFLPQDMKRSLTHEPVTSKV 322
+ IF + R H P+ KV
Sbjct: 585 KENNYTIPIFTNNLLIRDSRH-PLLEKV 611
Score = 44 (20.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 240 LNDELQQARASVTKAEEDVLLALTEKM-QVD-LDEIEKMLNGIIQLDVVNARATYSL 294
LND+L Q+R L++ T+K+ D + EIEK++N I D V A + L
Sbjct: 390 LNDQLIQSR----------LISETKKIFNNDAIMEIEKLINSCINEDCVWASSAIQL 436
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 150 (57.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 37/114 (32%), Positives = 58/114 (50%)
Query: 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSL 466
++ LV+TGPN GK+I +K V L + +A G ++ + A + D +F + ++
Sbjct: 231 KEPSALVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTR-ATIGVTDRIFTRVATRETA 289
Query: 467 SQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520
S F LKQ I+ +T +SL+L DE G GT G A+ + L F E
Sbjct: 290 MDDESAFMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLE 343
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 126 (49.4 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 413 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS------- 465
++TGPN GK+ L+ VGL V++A++G + ++ + +P F ++ +G
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAA-HCCLPPFTALLGRLGTAMGGGAGAGG 59
Query: 466 ----LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510
L S+F ++ +++S + +SLVLLDE+G GT+ +G L
Sbjct: 60 GADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGL 108
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 149 (57.5 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 380 DTNLSPSEM-QVS-ALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 437
+ LS +E+ V+ AL L V + A ++++TGPN GGKT+ L++VG+A +M +
Sbjct: 295 ERRLSCAELYDVTLALTLGSSVVGNDISADGKSLIIVTGPNRGGKTVFLRSVGVAQLMMQ 354
Query: 438 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 497
G+ + + + +F E+ + F L ++ I+ T +L+LL+E
Sbjct: 355 CGMFVPAESFL-ANLTTGLFTHFKREEDKTMERGKFEEELARMSVIVDYLTPNALLLLNE 413
Query: 498 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543
+ TN EG+ + ++ E G + TH E T ++ D
Sbjct: 414 SFSATNEREGSEIARQIVSTLIEKG-IKVYFVTHLYEF-TRSFNGD 457
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 132 (51.5 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/184 (27%), Positives = 81/184 (44%)
Query: 435 MAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVL 494
MA G + +S A++P F +F S SLS F+ + + ++ SL+L
Sbjct: 1 MALLGCGVCASN-AQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLL 59
Query: 495 LDEIGAGTNPLEGTALGMSLLEAFAESGSLL--TIATTHHGELKTLKYSNDFFENACMEF 552
+DE G GT+P +G AL ++ L GS TI +TH + Y D N C+
Sbjct: 60 IDEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHF--ISFFHYI-DL--NKCVPL 114
Query: 553 D-EVKLKPT-------YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 604
+V L + Y ++ G+ S I+ A LP ++ A Q+ A S +
Sbjct: 115 KMDVLLNQSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQI--ATSLSTSSP 172
Query: 605 IIEM 608
I+ +
Sbjct: 173 ILPL 176
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 108 (43.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 429 VGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 488
VG+ V+MA+ G + + A + D +FA +G + +STF + + +I+ ++
Sbjct: 16 VGVNVLMAQVGSFV-PCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 489 SQSLVLLDEIGAGTNPLEG 507
+SL+++DE+G GT+ +G
Sbjct: 75 DKSLIIIDELGRGTSTYDG 93
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 50/178 (28%), Positives = 89/178 (50%)
Query: 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS-VFADIGDEQSLSQSL 470
++ITG N GK+ L+TVG+ ++A G + + AK+ F + + + SL+ +
Sbjct: 427 IIITGANMAGKSTYLRTVGVNYLLACIGAPVWA---AKMEIFPARLVTSLRTSDSLTDNE 483
Query: 471 STFSGHLKQIGNIISQ-STSQSL-VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 528
S F LK++ II + + L ++LDEI GTN ++ +L++ F + IA
Sbjct: 484 SYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMSMDANGIIA 543
Query: 529 TTHHGELKTL--KYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGL 582
T H L TL + + N C E D +L +Y++ GV +A + +++G+
Sbjct: 544 T-HDLLLGTLIDAFPQNI-RNYCFEADITNNELTFSYQMRSGVAQNMNACFLMKKMGI 599
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 103 (41.3 bits), Expect = 0.00017, P = 0.00017
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522
+LKQ+ ++ +T+QSLVL+DE G GTN ++G AL ++L + G
Sbjct: 59 YLKQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARG 105
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.130 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 798 768 0.00092 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 170
No. of states in DFA: 620 (66 KB)
Total size of DFA: 342 KB (2173 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.01u 0.10s 69.11t Elapsed: 00:00:13
Total cpu time: 69.05u 0.11s 69.16t Elapsed: 00:00:13
Start: Tue May 21 11:01:14 2013 End: Tue May 21 11:01:27 2013
WARNINGS ISSUED: 1