Query 003747
Match_columns 798
No_of_seqs 555 out of 3009
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 11:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 1.8E-94 4E-99 861.5 68.6 632 49-796 1-680 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 4.7E-93 1E-97 847.5 67.8 625 49-796 1-668 (771)
3 COG1193 Mismatch repair ATPase 100.0 3.3E-80 7.1E-85 726.5 46.7 615 52-797 2-657 (753)
4 TIGR01070 mutS1 DNA mismatch r 100.0 7.8E-59 1.7E-63 558.3 43.6 474 44-596 246-780 (840)
5 PRK05399 DNA mismatch repair p 100.0 1.5E-56 3.2E-61 541.0 40.3 476 43-596 259-795 (854)
6 COG0249 MutS Mismatch repair A 100.0 8.4E-47 1.8E-51 450.7 37.5 477 42-596 255-795 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 4.7E-41 1E-45 376.4 33.1 474 46-594 457-1024(1070)
8 PF00488 MutS_V: MutS domain V 100.0 7.1E-39 1.5E-43 335.2 17.9 200 395-596 28-231 (235)
9 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.4E-37 3.1E-42 321.7 16.6 193 396-590 16-218 (218)
10 cd03285 ABC_MSH2_euk MutS2 hom 100.0 3.7E-37 8E-42 319.8 19.2 198 396-595 16-219 (222)
11 KOG0219 Mismatch repair ATPase 100.0 3.6E-36 7.8E-41 343.4 28.6 307 219-596 520-833 (902)
12 cd03287 ABC_MSH3_euk MutS3 hom 100.0 6E-37 1.3E-41 317.9 16.5 193 396-590 17-222 (222)
13 cd03284 ABC_MutS1 MutS1 homolo 100.0 4E-36 8.7E-41 310.8 19.1 197 396-594 17-216 (216)
14 KOG0217 Mismatch repair ATPase 100.0 5.5E-35 1.2E-39 339.7 30.5 475 49-596 540-1088(1125)
15 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.1E-35 2.3E-40 303.5 17.4 186 396-582 15-200 (200)
16 KOG0220 Mismatch repair ATPase 100.0 1.1E-34 2.4E-39 326.8 27.0 295 230-599 515-813 (867)
17 KOG0221 Mismatch repair ATPase 100.0 2.8E-33 6E-38 310.6 33.2 317 207-595 460-791 (849)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.1E-34 2.3E-39 299.6 16.8 186 396-582 15-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 3.6E-34 7.7E-39 293.9 17.3 184 396-581 15-203 (204)
20 smart00534 MUTSac ATPase domai 100.0 3.1E-33 6.7E-38 282.3 15.6 181 411-593 1-184 (185)
21 cd03243 ABC_MutS_homologs The 100.0 4.6E-33 1E-37 284.4 16.4 184 396-582 17-202 (202)
22 cd03283 ABC_MutS-like MutS-lik 100.0 2.1E-31 4.6E-36 272.3 17.6 183 396-582 13-199 (199)
23 smart00533 MUTSd DNA-binding d 99.9 1.4E-24 3.1E-29 234.0 19.8 250 61-342 3-306 (308)
24 COG1120 FepC ABC-type cobalami 99.9 3.3E-22 7.3E-27 210.4 13.3 159 395-555 13-222 (258)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 7.9E-22 1.7E-26 206.8 13.5 154 398-554 18-220 (254)
26 COG1126 GlnQ ABC-type polar am 99.9 1.2E-21 2.6E-26 198.7 13.3 157 395-554 13-218 (240)
27 PRK10636 putative ABC transpor 99.9 5.2E-21 1.1E-25 227.0 19.9 253 396-656 324-630 (638)
28 COG1131 CcmA ABC-type multidru 99.9 2.8E-21 6.1E-26 208.9 13.5 156 396-554 17-219 (293)
29 COG4152 ABC-type uncharacteriz 99.8 6.6E-21 1.4E-25 195.8 11.8 158 395-555 13-213 (300)
30 COG1127 Ttg2A ABC-type transpo 99.8 9.8E-21 2.1E-25 194.7 12.8 158 395-554 19-228 (263)
31 COG1136 SalX ABC-type antimicr 99.8 1.2E-20 2.7E-25 195.1 12.6 151 397-550 18-220 (226)
32 COG1116 TauB ABC-type nitrate/ 99.8 1E-20 2.2E-25 196.4 11.7 149 397-547 16-206 (248)
33 cd03214 ABC_Iron-Siderophores_ 99.8 2E-20 4.4E-25 187.9 13.3 153 397-552 12-178 (180)
34 COG3638 ABC-type phosphate/pho 99.8 2.1E-20 4.5E-25 191.8 13.3 161 394-555 14-231 (258)
35 PRK11147 ABC transporter ATPas 99.8 1.4E-19 2.9E-24 214.9 21.8 248 396-651 331-629 (635)
36 TIGR01188 drrA daunorubicin re 99.8 3.9E-20 8.5E-25 200.7 14.2 156 396-554 5-206 (302)
37 PRK13537 nodulation ABC transp 99.8 3.9E-20 8.4E-25 201.2 13.8 156 396-554 19-220 (306)
38 COG4555 NatA ABC-type Na+ tran 99.8 3.7E-20 8E-25 185.7 12.2 154 399-554 17-215 (245)
39 PRK13536 nodulation factor exp 99.8 5.8E-20 1.3E-24 202.6 14.0 157 396-554 53-254 (340)
40 cd03259 ABC_Carb_Solutes_like 99.8 7.4E-20 1.6E-24 188.0 13.9 153 397-552 13-211 (213)
41 cd03265 ABC_DrrA DrrA is the A 99.8 9.6E-20 2.1E-24 188.2 13.9 154 397-553 13-213 (220)
42 cd03226 ABC_cobalt_CbiO_domain 99.8 7.9E-20 1.7E-24 186.9 12.7 151 397-550 13-204 (205)
43 cd03216 ABC_Carb_Monos_I This 99.8 8.8E-20 1.9E-24 180.7 12.5 146 397-552 13-162 (163)
44 cd03227 ABC_Class2 ABC-type Cl 99.8 7E-20 1.5E-24 181.2 11.8 131 398-545 11-153 (162)
45 cd03268 ABC_BcrA_bacitracin_re 99.8 1.3E-19 2.8E-24 185.6 14.1 153 397-552 13-206 (208)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 9.3E-20 2E-24 187.8 12.6 150 397-549 17-217 (218)
47 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.3E-19 2.7E-24 187.3 13.5 154 397-553 17-215 (220)
48 cd03261 ABC_Org_Solvent_Resist 99.8 1.4E-19 3E-24 188.9 13.9 155 397-554 13-219 (235)
49 TIGR01288 nodI ATP-binding ABC 99.8 1.2E-19 2.5E-24 197.1 13.5 156 396-554 16-217 (303)
50 cd03269 ABC_putative_ATPase Th 99.8 1.7E-19 3.6E-24 185.0 13.9 153 397-552 13-208 (210)
51 TIGR00960 3a0501s02 Type II (G 99.8 1.1E-19 2.3E-24 187.2 12.5 150 397-549 16-215 (216)
52 TIGR02211 LolD_lipo_ex lipopro 99.8 1.5E-19 3.2E-24 186.6 13.1 151 397-550 18-219 (221)
53 cd03301 ABC_MalK_N The N-termi 99.8 2.2E-19 4.8E-24 184.3 14.1 153 397-552 13-211 (213)
54 COG1125 OpuBA ABC-type proline 99.8 1.4E-19 3E-24 187.1 12.4 155 396-551 13-215 (309)
55 cd03225 ABC_cobalt_CbiO_domain 99.8 1.4E-19 3.1E-24 185.5 12.5 149 397-548 14-210 (211)
56 cd03218 ABC_YhbG The ABC trans 99.8 1.9E-19 4.2E-24 187.2 13.6 154 397-553 13-214 (232)
57 PRK11247 ssuB aliphatic sulfon 99.8 2.7E-19 5.8E-24 190.1 14.6 156 396-554 24-216 (257)
58 cd03238 ABC_UvrA The excision 99.8 8.2E-20 1.8E-24 183.6 10.0 147 397-550 8-166 (176)
59 COG1137 YhbG ABC-type (unclass 99.8 1.8E-19 3.9E-24 180.6 12.1 157 395-554 15-221 (243)
60 cd03232 ABC_PDR_domain2 The pl 99.8 1.7E-19 3.8E-24 183.0 12.2 154 397-552 20-190 (192)
61 cd03266 ABC_NatA_sodium_export 99.8 3E-19 6.6E-24 184.0 14.1 152 398-552 19-216 (218)
62 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 3.3E-19 7.2E-24 186.3 14.0 155 396-553 13-213 (236)
63 cd03256 ABC_PhnC_transporter A 99.8 3.4E-19 7.3E-24 186.2 14.0 154 397-553 14-226 (241)
64 cd03219 ABC_Mj1267_LivG_branch 99.8 3E-19 6.6E-24 186.2 13.6 154 397-553 13-224 (236)
65 PRK11629 lolD lipoprotein tran 99.8 3.6E-19 7.9E-24 185.6 14.1 153 397-552 22-225 (233)
66 cd03246 ABCC_Protease_Secretio 99.8 1.6E-19 3.4E-24 180.3 10.8 146 397-549 15-172 (173)
67 cd03258 ABC_MetN_methionine_tr 99.8 3.5E-19 7.5E-24 185.5 13.7 154 398-554 19-223 (233)
68 PRK10584 putative ABC transpor 99.8 3.3E-19 7.1E-24 185.1 13.4 151 398-551 24-225 (228)
69 COG0411 LivG ABC-type branched 99.8 2E-19 4.4E-24 185.7 11.5 157 395-554 15-232 (250)
70 TIGR02673 FtsE cell division A 99.8 2.9E-19 6.3E-24 183.6 12.7 149 397-548 15-213 (214)
71 cd03296 ABC_CysA_sulfate_impor 99.8 3.2E-19 6.9E-24 186.7 13.2 155 397-554 15-219 (239)
72 COG1122 CbiO ABC-type cobalt t 99.8 1.7E-19 3.7E-24 188.9 11.1 156 397-555 17-222 (235)
73 TIGR02315 ABC_phnC phosphonate 99.8 4E-19 8.6E-24 186.1 13.8 154 397-553 15-227 (243)
74 TIGR03522 GldA_ABC_ATP gliding 99.8 3.3E-19 7.2E-24 193.4 13.5 155 396-554 14-214 (301)
75 PRK09536 btuD corrinoid ABC tr 99.8 3.5E-19 7.6E-24 200.1 14.2 156 396-554 15-221 (402)
76 cd03235 ABC_Metallic_Cations A 99.8 3E-19 6.6E-24 183.5 12.5 151 397-550 12-210 (213)
77 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 4.4E-19 9.5E-24 184.4 13.8 154 396-552 34-222 (224)
78 PRK13650 cbiO cobalt transport 99.8 5E-19 1.1E-23 190.0 14.5 155 397-554 20-222 (279)
79 cd03292 ABC_FtsE_transporter F 99.8 4.1E-19 8.8E-24 182.4 13.1 150 397-549 14-213 (214)
80 PRK13647 cbiO cobalt transport 99.8 5.6E-19 1.2E-23 189.1 14.5 155 397-554 18-220 (274)
81 TIGR03740 galliderm_ABC gallid 99.8 6.3E-19 1.4E-23 182.5 14.3 155 397-554 13-206 (223)
82 cd03263 ABC_subfamily_A The AB 99.8 4.8E-19 1E-23 182.7 13.4 154 397-554 15-214 (220)
83 cd03230 ABC_DR_subfamily_A Thi 99.8 2.5E-19 5.3E-24 178.9 10.8 145 397-549 13-172 (173)
84 PRK09493 glnQ glutamine ABC tr 99.8 5.9E-19 1.3E-23 184.7 14.1 155 397-554 14-218 (240)
85 cd03294 ABC_Pro_Gly_Bertaine T 99.8 5.4E-19 1.2E-23 188.7 14.0 155 396-553 36-242 (269)
86 cd03224 ABC_TM1139_LivF_branch 99.8 6.6E-19 1.4E-23 181.8 14.1 154 397-553 13-213 (222)
87 TIGR02314 ABC_MetN D-methionin 99.8 5.6E-19 1.2E-23 194.9 14.3 154 397-553 18-222 (343)
88 PRK11248 tauB taurine transpor 99.8 7.4E-19 1.6E-23 186.3 14.7 154 397-553 14-212 (255)
89 cd03267 ABC_NatA_like Similar 99.8 5.3E-19 1.1E-23 185.1 13.4 154 396-552 33-234 (236)
90 PRK11650 ugpC glycerol-3-phosp 99.8 6.3E-19 1.4E-23 195.5 14.6 156 396-554 16-217 (356)
91 PRK13644 cbiO cobalt transport 99.8 6.7E-19 1.5E-23 188.5 14.3 155 397-554 15-217 (274)
92 COG1118 CysA ABC-type sulfate/ 99.8 3.5E-19 7.5E-24 188.6 11.8 155 397-553 15-219 (345)
93 PRK11153 metN DL-methionine tr 99.8 6.5E-19 1.4E-23 194.6 14.5 155 397-554 18-223 (343)
94 PRK11300 livG leucine/isoleuci 99.8 8.2E-19 1.8E-23 185.1 14.6 156 396-553 17-235 (255)
95 cd03262 ABC_HisP_GlnQ_permease 99.8 4.4E-19 9.6E-24 181.9 12.1 150 397-549 13-212 (213)
96 cd03229 ABC_Class3 This class 99.8 3.2E-19 6.9E-24 178.9 10.7 145 397-548 13-177 (178)
97 PRK11614 livF leucine/isoleuci 99.8 7.1E-19 1.5E-23 183.8 13.7 155 397-554 18-219 (237)
98 COG3842 PotA ABC-type spermidi 99.8 2.2E-19 4.9E-24 196.6 10.2 154 396-551 17-216 (352)
99 PRK11264 putative amino-acid A 99.8 7.3E-19 1.6E-23 185.0 13.8 154 397-553 16-225 (250)
100 PRK13638 cbiO cobalt transport 99.8 6.5E-19 1.4E-23 188.1 13.4 155 397-554 14-218 (271)
101 cd03213 ABCG_EPDR ABCG transpo 99.8 5.4E-19 1.2E-23 179.8 12.2 153 397-552 22-192 (194)
102 PRK10908 cell division protein 99.8 7.9E-19 1.7E-23 181.7 13.6 152 397-551 15-216 (222)
103 PRK10895 lipopolysaccharide AB 99.8 8.8E-19 1.9E-23 183.5 14.1 155 396-553 15-218 (241)
104 PRK13635 cbiO cobalt transport 99.8 8.9E-19 1.9E-23 188.1 14.4 155 397-554 20-222 (279)
105 COG2884 FtsE Predicted ATPase 99.8 7.5E-19 1.6E-23 175.0 12.6 157 395-554 13-219 (223)
106 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.4E-19 1.4E-23 180.0 12.6 156 397-554 13-187 (200)
107 PRK13637 cbiO cobalt transport 99.8 7.6E-19 1.6E-23 189.4 13.6 156 397-554 20-227 (287)
108 PRK13651 cobalt transporter AT 99.8 8E-19 1.7E-23 190.9 13.9 154 398-554 21-247 (305)
109 cd03264 ABC_drug_resistance_li 99.8 7.1E-19 1.5E-23 180.5 12.7 151 397-552 13-209 (211)
110 PRK13641 cbiO cobalt transport 99.8 7.8E-19 1.7E-23 189.2 13.5 155 397-554 20-227 (287)
111 PRK11000 maltose/maltodextrin 99.8 8.2E-19 1.8E-23 195.5 14.1 155 396-554 15-216 (369)
112 PRK11831 putative ABC transpor 99.8 1.1E-18 2.3E-23 186.3 14.3 156 396-554 19-226 (269)
113 cd03223 ABCD_peroxisomal_ALDP 99.8 4.3E-19 9.2E-24 176.3 10.1 145 397-548 14-163 (166)
114 TIGR01184 ntrCD nitrate transp 99.8 9.2E-19 2E-23 182.6 12.9 151 401-554 2-197 (230)
115 TIGR01186 proV glycine betaine 99.8 1E-18 2.3E-23 193.9 14.0 155 396-553 5-211 (363)
116 PRK13548 hmuV hemin importer A 99.8 1.1E-18 2.4E-23 185.1 13.6 155 396-553 14-222 (258)
117 TIGR03608 L_ocin_972_ABC putat 99.8 7.8E-19 1.7E-23 179.2 11.9 144 397-543 11-204 (206)
118 cd03215 ABC_Carb_Monos_II This 99.8 6.4E-19 1.4E-23 177.3 11.1 147 399-549 15-181 (182)
119 TIGR03411 urea_trans_UrtD urea 99.8 9.8E-19 2.1E-23 183.1 12.9 154 397-554 15-224 (242)
120 cd03260 ABC_PstB_phosphate_tra 99.8 1.3E-18 2.9E-23 180.4 13.8 155 397-554 13-222 (227)
121 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.2E-18 2.6E-23 178.8 13.3 148 402-552 16-209 (211)
122 PRK13643 cbiO cobalt transport 99.8 9.8E-19 2.1E-23 188.6 13.2 154 398-554 20-226 (288)
123 COG4586 ABC-type uncharacteriz 99.8 1.1E-18 2.4E-23 182.0 12.8 155 399-554 39-239 (325)
124 TIGR01978 sufC FeS assembly AT 99.8 1.2E-18 2.7E-23 182.2 13.3 155 397-554 13-227 (243)
125 TIGR03005 ectoine_ehuA ectoine 99.8 2E-18 4.3E-23 182.2 14.8 154 397-553 13-228 (252)
126 cd03257 ABC_NikE_OppD_transpor 99.8 1.4E-18 3.1E-23 179.9 13.5 152 398-552 19-226 (228)
127 PRK11124 artP arginine transpo 99.8 1.5E-18 3.3E-23 181.8 13.8 155 397-554 15-223 (242)
128 PRK13634 cbiO cobalt transport 99.8 1.3E-18 2.8E-23 187.8 13.6 155 397-554 20-228 (290)
129 PRK09984 phosphonate/organopho 99.8 1.6E-18 3.5E-23 184.0 14.1 157 396-554 16-235 (262)
130 cd03247 ABCC_cytochrome_bd The 99.8 8E-19 1.7E-23 175.8 11.1 148 398-552 16-176 (178)
131 TIGR03258 PhnT 2-aminoethylpho 99.8 1.4E-18 3E-23 193.2 14.1 155 397-554 18-221 (362)
132 TIGR03265 PhnT2 putative 2-ami 99.8 1.4E-18 3.1E-23 192.5 14.2 155 397-554 17-217 (353)
133 TIGR03410 urea_trans_UrtE urea 99.8 1.6E-18 3.5E-23 180.2 13.4 154 397-553 13-213 (230)
134 cd03297 ABC_ModC_molybdenum_tr 99.8 1.5E-18 3.3E-23 178.6 13.0 147 402-552 16-212 (214)
135 PRK11432 fbpC ferric transport 99.8 1.6E-18 3.5E-23 191.9 14.1 155 396-554 18-219 (351)
136 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.3E-18 5.1E-23 180.6 14.6 154 397-553 14-217 (242)
137 PRK11231 fecE iron-dicitrate t 99.8 2.1E-18 4.4E-23 182.5 14.2 155 396-553 14-219 (255)
138 PRK09452 potA putrescine/sperm 99.8 1.9E-18 4.2E-23 192.8 14.6 155 396-554 26-227 (375)
139 PRK10851 sulfate/thiosulfate t 99.8 1.6E-18 3.4E-23 192.2 13.5 154 397-554 15-219 (353)
140 PRK13632 cbiO cobalt transport 99.8 2.2E-18 4.8E-23 184.1 14.2 156 396-554 21-224 (271)
141 PRK09544 znuC high-affinity zi 99.8 2.4E-18 5.3E-23 182.1 14.4 152 397-552 17-200 (251)
142 PRK13652 cbiO cobalt transport 99.8 2.4E-18 5.1E-23 184.5 14.4 155 397-554 17-220 (277)
143 TIGR03873 F420-0_ABC_ATP propo 99.8 1.8E-18 3.9E-23 183.0 13.3 156 396-554 13-219 (256)
144 COG3839 MalK ABC-type sugar tr 99.8 1.1E-18 2.3E-23 190.4 11.8 177 399-585 18-239 (338)
145 COG1135 AbcC ABC-type metal io 99.8 1.8E-18 3.8E-23 183.6 13.1 156 397-554 19-224 (339)
146 PRK13636 cbiO cobalt transport 99.8 2.1E-18 4.6E-23 185.5 14.0 155 397-554 19-224 (283)
147 PRK13646 cbiO cobalt transport 99.8 1.7E-18 3.7E-23 186.5 13.3 155 397-554 20-228 (286)
148 PRK10619 histidine/lysine/argi 99.8 2.5E-18 5.5E-23 182.0 14.2 155 396-553 17-233 (257)
149 COG3840 ThiQ ABC-type thiamine 99.8 1.7E-18 3.6E-23 171.5 11.8 157 398-555 13-213 (231)
150 PRK13640 cbiO cobalt transport 99.8 2.4E-18 5.3E-23 184.9 14.3 156 397-554 20-225 (282)
151 PRK13633 cobalt transporter AT 99.8 2.3E-18 5E-23 184.9 14.1 155 397-554 23-226 (280)
152 PRK14250 phosphate ABC transpo 99.8 2.7E-18 5.8E-23 180.2 14.0 153 397-553 16-213 (241)
153 PRK13546 teichoic acids export 99.8 2.2E-18 4.7E-23 183.9 13.5 154 396-552 36-223 (264)
154 PRK10253 iron-enterobactin tra 99.8 2.5E-18 5.4E-23 183.0 13.9 156 396-554 19-226 (265)
155 PRK13648 cbiO cobalt transport 99.8 2.3E-18 5E-23 183.7 13.7 155 397-554 22-224 (269)
156 cd03245 ABCC_bacteriocin_expor 99.8 1.8E-18 3.9E-23 178.5 12.4 151 397-552 17-218 (220)
157 PRK10575 iron-hydroxamate tran 99.8 1.9E-18 4.2E-23 183.9 13.0 155 396-553 23-229 (265)
158 PRK13649 cbiO cobalt transport 99.8 2.3E-18 5E-23 184.6 13.5 155 397-554 20-227 (280)
159 TIGR02770 nickel_nikD nickel i 99.8 2.4E-18 5.2E-23 179.3 13.2 153 400-554 2-208 (230)
160 cd03228 ABCC_MRP_Like The MRP 99.8 1.1E-18 2.4E-23 173.9 10.2 143 398-548 16-170 (171)
161 PRK11701 phnK phosphonate C-P 99.8 2.8E-18 6E-23 181.8 13.8 155 397-554 19-234 (258)
162 TIGR02769 nickel_nikE nickel i 99.8 2.8E-18 6.1E-23 182.6 13.8 155 397-554 24-233 (265)
163 TIGR01277 thiQ thiamine ABC tr 99.8 3.5E-18 7.5E-23 175.9 13.9 152 400-554 14-211 (213)
164 PRK10938 putative molybdenum t 99.8 2.1E-18 4.6E-23 198.8 13.6 154 397-553 16-216 (490)
165 PRK10418 nikD nickel transport 99.8 3.6E-18 7.9E-23 180.6 14.1 156 397-554 16-223 (254)
166 PRK10070 glycine betaine trans 99.8 2.8E-18 6E-23 192.8 13.8 155 396-553 40-246 (400)
167 PRK11607 potG putrescine trans 99.8 3.2E-18 6.8E-23 191.2 14.1 156 396-554 31-232 (377)
168 PRK15177 Vi polysaccharide exp 99.8 3.4E-18 7.3E-23 176.6 13.3 153 398-554 1-185 (213)
169 PRK13639 cbiO cobalt transport 99.8 3.3E-18 7.2E-23 183.2 13.7 155 397-554 15-219 (275)
170 PRK13645 cbiO cobalt transport 99.8 3.4E-18 7.3E-23 184.3 13.6 154 398-554 25-233 (289)
171 TIGR01166 cbiO cobalt transpor 99.8 2.1E-18 4.5E-23 174.3 11.3 137 396-535 4-189 (190)
172 PRK15112 antimicrobial peptide 99.8 4E-18 8.7E-23 181.7 14.0 155 397-554 26-232 (267)
173 PRK15056 manganese/iron transp 99.8 4.1E-18 9E-23 182.1 14.1 154 396-553 19-222 (272)
174 TIGR00968 3a0106s01 sulfate AB 99.8 4.8E-18 1E-22 177.9 14.2 154 397-553 13-212 (237)
175 PRK03695 vitamin B12-transport 99.8 3.6E-18 7.7E-23 180.2 13.3 152 399-554 11-215 (248)
176 cd03252 ABCC_Hemolysin The ABC 99.8 3.1E-18 6.7E-23 178.9 12.7 154 397-554 15-218 (237)
177 TIGR02323 CP_lyasePhnK phospho 99.8 4.3E-18 9.4E-23 179.6 13.9 155 397-554 16-231 (253)
178 PRK10771 thiQ thiamine transpo 99.8 4.9E-18 1.1E-22 177.0 14.1 150 402-554 17-212 (232)
179 PRK15439 autoinducer 2 ABC tra 99.8 3.2E-18 7E-23 198.3 14.1 155 396-553 23-221 (510)
180 COG1117 PstB ABC-type phosphat 99.8 2.8E-18 6.1E-23 173.8 11.7 155 395-552 18-228 (253)
181 TIGR02982 heterocyst_DevA ABC 99.8 4.6E-18 9.9E-23 175.9 13.7 151 397-550 18-219 (220)
182 cd03233 ABC_PDR_domain1 The pl 99.8 4.6E-18 9.9E-23 174.1 12.6 156 396-552 19-200 (202)
183 TIGR03415 ABC_choXWV_ATP choli 99.8 5.2E-18 1.1E-22 189.4 14.0 156 395-554 35-247 (382)
184 PRK14268 phosphate ABC transpo 99.8 6.7E-18 1.4E-22 179.0 14.1 156 396-554 24-235 (258)
185 cd03300 ABC_PotA_N PotA is an 99.8 5.9E-18 1.3E-22 176.5 13.5 155 397-554 13-213 (232)
186 TIGR00972 3a0107s01c2 phosphat 99.8 6.5E-18 1.4E-22 177.8 13.8 153 397-553 14-224 (247)
187 PRK13549 xylose transporter AT 99.8 3.8E-18 8.3E-23 197.5 13.2 156 396-553 17-224 (506)
188 cd03234 ABCG_White The White s 99.8 4.1E-18 8.8E-23 177.0 12.1 154 397-552 20-224 (226)
189 TIGR03269 met_CoM_red_A2 methy 99.8 5.1E-18 1.1E-22 197.0 14.1 156 396-553 12-250 (520)
190 PRK10762 D-ribose transporter 99.8 4.3E-18 9.3E-23 196.9 13.3 155 396-553 16-222 (501)
191 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 4.4E-18 9.5E-23 177.8 12.1 154 397-554 16-219 (238)
192 PRK13631 cbiO cobalt transport 99.8 6.3E-18 1.4E-22 185.1 13.7 155 397-554 39-258 (320)
193 PRK10247 putative ABC transpor 99.7 5.9E-18 1.3E-22 175.8 12.8 148 396-546 19-211 (225)
194 TIGR02142 modC_ABC molybdenum 99.7 6E-18 1.3E-22 187.6 13.6 149 402-553 15-213 (354)
195 PRK09700 D-allose transporter 99.7 5.9E-18 1.3E-22 196.0 13.9 156 396-554 17-227 (510)
196 COG0410 LivF ABC-type branched 99.7 8.8E-18 1.9E-22 172.5 13.5 156 396-554 15-219 (237)
197 PRK09580 sufC cysteine desulfu 99.7 7.6E-18 1.6E-22 176.9 13.4 155 397-553 14-227 (248)
198 PRK13545 tagH teichoic acids e 99.7 6E-18 1.3E-22 193.6 13.5 154 397-553 37-224 (549)
199 cd03253 ABCC_ATM1_transporter 99.7 6.5E-18 1.4E-22 176.1 12.6 152 397-553 14-216 (236)
200 COG1124 DppF ABC-type dipeptid 99.7 8.1E-18 1.8E-22 173.8 12.9 155 398-554 21-224 (252)
201 cd03250 ABCC_MRP_domain1 Domai 99.7 5.5E-18 1.2E-22 173.2 11.7 149 398-548 19-203 (204)
202 PRK11144 modC molybdate transp 99.7 6.7E-18 1.4E-22 187.2 13.2 149 402-554 16-211 (352)
203 PRK13543 cytochrome c biogenes 99.7 6.8E-18 1.5E-22 174.1 12.4 147 396-545 23-210 (214)
204 COG4559 ABC-type hemin transpo 99.7 7.5E-18 1.6E-22 170.4 12.2 158 395-554 12-223 (259)
205 PRK13538 cytochrome c biogenes 99.7 8E-18 1.7E-22 172.2 12.7 140 397-539 14-195 (204)
206 PRK11022 dppD dipeptide transp 99.7 9.9E-18 2.1E-22 184.0 14.2 155 397-553 20-235 (326)
207 PRK10744 pstB phosphate transp 99.7 7.1E-18 1.5E-22 179.0 12.7 155 397-554 26-237 (260)
208 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 4.9E-18 1.1E-22 165.1 10.5 128 397-548 13-143 (144)
209 PRK14242 phosphate transporter 99.7 6.5E-18 1.4E-22 178.2 12.3 154 397-554 19-230 (253)
210 cd03251 ABCC_MsbA MsbA is an e 99.7 5.9E-18 1.3E-22 176.2 11.8 151 398-553 16-217 (234)
211 cd03254 ABCC_Glucan_exporter_l 99.7 8.1E-18 1.8E-22 174.7 12.7 152 397-553 16-218 (229)
212 CHL00131 ycf16 sulfate ABC tra 99.7 6.9E-18 1.5E-22 177.8 12.3 155 397-554 20-234 (252)
213 cd03244 ABCC_MRP_domain2 Domai 99.7 8E-18 1.7E-22 173.8 12.6 152 397-553 17-218 (221)
214 PRK14245 phosphate ABC transpo 99.7 8.2E-18 1.8E-22 177.3 12.7 155 397-554 16-227 (250)
215 PRK14235 phosphate transporter 99.7 1.3E-17 2.8E-22 177.9 14.3 156 396-554 31-244 (267)
216 PRK13547 hmuV hemin importer A 99.7 9.1E-18 2E-22 179.8 13.1 157 396-554 13-237 (272)
217 cd03222 ABC_RNaseL_inhibitor T 99.7 3.5E-18 7.5E-23 172.0 9.2 132 397-548 13-148 (177)
218 PRK13642 cbiO cobalt transport 99.7 1.3E-17 2.9E-22 178.7 14.3 154 398-554 21-222 (277)
219 PRK15079 oligopeptide ABC tran 99.7 1.3E-17 2.9E-22 183.3 14.5 155 397-554 34-244 (331)
220 PRK10419 nikE nickel transport 99.7 1.3E-17 2.8E-22 178.0 13.9 155 397-554 25-234 (268)
221 COG1119 ModF ABC-type molybden 99.7 4.2E-18 9E-23 176.1 9.6 162 391-553 38-254 (257)
222 PRK14247 phosphate ABC transpo 99.7 1.1E-17 2.4E-22 176.2 13.0 155 397-554 16-227 (250)
223 COG4604 CeuD ABC-type enteroch 99.7 7.8E-18 1.7E-22 168.5 11.1 157 395-554 12-218 (252)
224 PRK14248 phosphate ABC transpo 99.7 9.5E-18 2.1E-22 178.8 12.6 155 396-554 33-245 (268)
225 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.1E-17 2.5E-22 176.6 12.9 145 399-546 9-190 (246)
226 PRK14269 phosphate ABC transpo 99.7 1E-17 2.2E-22 176.3 12.5 155 397-554 15-223 (246)
227 PRK13539 cytochrome c biogenes 99.7 9.5E-18 2.1E-22 172.2 11.9 144 397-544 15-197 (207)
228 cd03290 ABCC_SUR1_N The SUR do 99.7 1E-17 2.2E-22 172.9 12.1 149 397-548 14-217 (218)
229 PRK11308 dppF dipeptide transp 99.7 1.5E-17 3.2E-22 182.7 14.1 155 397-554 28-237 (327)
230 PRK13549 xylose transporter AT 99.7 8.4E-18 1.8E-22 194.7 12.7 156 397-554 275-487 (506)
231 PRK14244 phosphate ABC transpo 99.7 1.3E-17 2.8E-22 175.9 13.0 154 397-554 18-230 (251)
232 PRK10636 putative ABC transpor 99.7 6.3E-17 1.4E-21 192.3 20.4 151 395-551 12-225 (638)
233 cd03248 ABCC_TAP TAP, the Tran 99.7 7.5E-18 1.6E-22 174.7 11.0 148 397-549 27-225 (226)
234 PRK14267 phosphate ABC transpo 99.7 1.3E-17 2.9E-22 175.9 13.0 155 397-554 17-230 (253)
235 PRK15093 antimicrobial peptide 99.7 1.8E-17 3.9E-22 182.2 14.5 156 397-554 20-241 (330)
236 PRK10982 galactose/methyl gala 99.7 1.1E-17 2.4E-22 192.9 13.1 155 396-553 10-215 (491)
237 PRK14273 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 175.3 13.4 155 397-554 20-231 (254)
238 cd03299 ABC_ModC_like Archeal 99.7 2.3E-17 5E-22 172.5 14.1 151 399-553 14-211 (235)
239 TIGR02633 xylG D-xylose ABC tr 99.7 1.2E-17 2.7E-22 192.8 13.2 156 396-553 13-222 (500)
240 PRK14239 phosphate transporter 99.7 2.5E-17 5.5E-22 173.5 14.3 155 397-554 18-229 (252)
241 PRK14274 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 175.9 13.0 154 397-554 25-236 (259)
242 TIGR02633 xylG D-xylose ABC tr 99.7 1E-17 2.2E-22 193.6 12.3 156 397-554 273-485 (500)
243 PRK14237 phosphate transporter 99.7 2.3E-17 5.1E-22 175.9 14.1 155 396-554 32-244 (267)
244 PRK14275 phosphate ABC transpo 99.7 2.4E-17 5.3E-22 177.6 14.3 154 397-554 52-263 (286)
245 cd03231 ABC_CcmA_heme_exporter 99.7 1.8E-17 3.9E-22 169.4 12.3 144 396-542 12-195 (201)
246 PRK14270 phosphate ABC transpo 99.7 2.9E-17 6.3E-22 173.2 14.1 154 397-554 17-228 (251)
247 PRK14262 phosphate ABC transpo 99.7 3E-17 6.4E-22 172.9 14.2 155 397-554 16-227 (250)
248 PRK14251 phosphate ABC transpo 99.7 3E-17 6.5E-22 173.0 14.2 154 397-553 17-227 (251)
249 COG0488 Uup ATPase components 99.7 8.1E-17 1.8E-21 186.0 18.8 149 395-550 14-228 (530)
250 PRK11288 araG L-arabinose tran 99.7 1.6E-17 3.4E-22 192.2 12.9 155 396-553 16-221 (501)
251 PRK13540 cytochrome c biogenes 99.7 2.3E-17 5E-22 168.3 12.5 142 397-541 14-195 (200)
252 PRK11288 araG L-arabinose tran 99.7 1.2E-17 2.6E-22 193.1 11.8 154 398-554 267-478 (501)
253 TIGR02324 CP_lyasePhnL phospho 99.7 2.3E-17 4.9E-22 170.9 12.6 145 397-545 21-222 (224)
254 PRK09700 D-allose transporter 99.7 1.3E-17 2.7E-22 193.3 11.9 152 399-553 278-490 (510)
255 PRK14240 phosphate transporter 99.7 2.7E-17 5.8E-22 173.2 13.3 154 397-554 16-227 (250)
256 PRK14241 phosphate transporter 99.7 2.3E-17 4.9E-22 174.8 12.7 154 397-553 17-234 (258)
257 TIGR01189 ccmA heme ABC export 99.7 2.2E-17 4.9E-22 168.0 11.9 136 396-534 12-188 (198)
258 PRK15134 microcin C ABC transp 99.7 1.9E-17 4.1E-22 192.8 12.8 154 397-554 299-508 (529)
259 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.4E-17 5.2E-22 161.6 11.5 140 397-548 12-156 (157)
260 TIGR03269 met_CoM_red_A2 methy 99.7 2.9E-17 6.3E-22 190.7 14.2 155 397-554 297-510 (520)
261 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.7E-17 3.7E-22 169.9 10.6 151 397-553 21-204 (207)
262 PRK15064 ABC transporter ATP-b 99.7 2.3E-17 5E-22 192.0 13.1 150 396-551 13-231 (530)
263 PRK09473 oppD oligopeptide tra 99.7 3.7E-17 7.9E-22 179.8 13.7 156 397-554 29-244 (330)
264 PRK15439 autoinducer 2 ABC tra 99.7 1.8E-17 4E-22 192.1 12.0 153 399-553 278-484 (510)
265 COG1134 TagH ABC-type polysacc 99.7 2.5E-17 5.4E-22 170.5 11.6 157 396-555 39-230 (249)
266 PRK14256 phosphate ABC transpo 99.7 4.4E-17 9.6E-22 171.9 13.8 155 397-554 17-229 (252)
267 PRK15134 microcin C ABC transp 99.7 3.1E-17 6.6E-22 191.0 13.8 155 397-553 22-238 (529)
268 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.3E-17 7.1E-22 176.4 12.9 154 397-553 50-239 (282)
269 PRK10938 putative molybdenum t 99.7 1.8E-17 3.9E-22 191.1 11.6 157 397-554 273-485 (490)
270 TIGR03771 anch_rpt_ABC anchore 99.7 2.9E-17 6.3E-22 170.6 12.0 145 407-554 4-194 (223)
271 PRK14261 phosphate ABC transpo 99.7 6E-17 1.3E-21 171.0 14.2 154 396-553 18-229 (253)
272 PRK14246 phosphate ABC transpo 99.7 5.3E-17 1.2E-21 172.3 13.9 157 395-554 21-234 (257)
273 PRK14265 phosphate ABC transpo 99.7 3.5E-17 7.6E-22 175.3 12.5 154 397-554 33-251 (274)
274 PRK10982 galactose/methyl gala 99.7 2.6E-17 5.7E-22 189.8 12.2 152 398-552 262-471 (491)
275 PRK14254 phosphate ABC transpo 99.7 4.1E-17 8.8E-22 175.9 12.9 154 397-554 52-262 (285)
276 PRK14253 phosphate ABC transpo 99.7 6E-17 1.3E-21 170.5 13.7 155 396-554 15-226 (249)
277 PRK14272 phosphate ABC transpo 99.7 4.8E-17 1E-21 171.4 13.0 156 396-554 16-229 (252)
278 PRK14255 phosphate ABC transpo 99.7 5.7E-17 1.2E-21 171.0 13.5 154 397-554 18-229 (252)
279 PRK13541 cytochrome c biogenes 99.7 4E-17 8.7E-22 165.9 11.9 137 401-540 17-190 (195)
280 PRK14249 phosphate ABC transpo 99.7 6.7E-17 1.4E-21 170.5 13.8 154 397-554 17-228 (251)
281 COG4619 ABC-type uncharacteriz 99.7 4.2E-17 9.1E-22 159.7 11.2 156 395-551 14-213 (223)
282 PRK14259 phosphate ABC transpo 99.7 5.3E-17 1.1E-21 173.4 12.9 147 397-547 26-228 (269)
283 COG4181 Predicted ABC-type tra 99.7 3.9E-17 8.4E-22 160.4 10.7 158 395-553 21-227 (228)
284 PRK14238 phosphate transporter 99.7 8E-17 1.7E-21 172.2 14.2 154 397-554 37-248 (271)
285 cd03289 ABCC_CFTR2 The CFTR su 99.7 5.8E-17 1.3E-21 173.9 13.0 152 396-553 16-217 (275)
286 PRK10762 D-ribose transporter 99.7 3.8E-17 8.3E-22 189.0 12.4 154 399-554 267-477 (501)
287 COG4598 HisP ABC-type histidin 99.7 5.7E-17 1.2E-21 160.1 11.7 157 396-554 18-234 (256)
288 PRK10261 glutathione transport 99.7 6.4E-17 1.4E-21 191.8 14.2 155 397-554 337-546 (623)
289 PRK14271 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 173.4 12.8 156 396-554 33-244 (276)
290 PRK14236 phosphate transporter 99.7 6.3E-17 1.4E-21 173.0 12.6 155 396-554 37-249 (272)
291 PRK15064 ABC transporter ATP-b 99.7 4.4E-17 9.5E-22 189.7 12.1 149 397-551 332-514 (530)
292 cd03270 ABC_UvrA_I The excisio 99.7 6.5E-17 1.4E-21 168.6 11.6 86 466-553 131-225 (226)
293 PRK10261 glutathione transport 99.7 7E-17 1.5E-21 191.5 13.1 154 397-553 29-250 (623)
294 cd03288 ABCC_SUR2 The SUR doma 99.7 8.3E-17 1.8E-21 170.6 12.3 153 397-554 34-236 (257)
295 PRK14258 phosphate ABC transpo 99.7 1.5E-16 3.2E-21 169.2 13.9 155 397-554 20-238 (261)
296 PLN03073 ABC transporter F fam 99.7 6.1E-17 1.3E-21 194.0 12.2 150 396-551 521-703 (718)
297 PRK11147 ABC transporter ATPas 99.7 9E-17 2E-21 191.0 13.0 148 396-551 15-232 (635)
298 cd03236 ABC_RNaseL_inhibitor_d 99.7 7.6E-17 1.6E-21 171.2 11.0 150 398-551 15-217 (255)
299 PRK14263 phosphate ABC transpo 99.7 1.9E-16 4E-21 168.6 14.0 155 396-553 20-237 (261)
300 COG0396 sufC Cysteine desulfur 99.7 7.6E-17 1.7E-21 165.2 10.5 157 397-555 17-228 (251)
301 PRK14260 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 169.5 12.2 153 397-553 20-235 (259)
302 PRK14266 phosphate ABC transpo 99.7 2.2E-16 4.7E-21 166.3 14.1 154 397-554 16-227 (250)
303 PRK14252 phosphate ABC transpo 99.7 1.5E-16 3.3E-21 169.3 12.9 155 396-554 28-242 (265)
304 TIGR01257 rim_protein retinal- 99.7 1.2E-16 2.7E-21 205.5 14.3 155 397-554 1952-2152(2272)
305 PRK14264 phosphate ABC transpo 99.7 1.4E-16 3E-21 173.3 12.7 156 396-554 57-282 (305)
306 COG0488 Uup ATPase components 99.7 9.5E-17 2.1E-21 185.5 11.7 145 396-547 334-511 (530)
307 PRK14243 phosphate transporter 99.7 1.9E-16 4E-21 168.7 13.0 153 397-553 23-240 (264)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 8.9E-17 1.9E-21 188.1 11.6 149 396-551 17-237 (552)
309 PRK13409 putative ATPase RIL; 99.7 1.5E-16 3.3E-21 187.1 13.6 151 399-553 354-534 (590)
310 COG4161 ArtP ABC-type arginine 99.7 2.3E-16 4.9E-21 153.5 12.1 159 395-556 13-225 (242)
311 PRK11819 putative ABC transpor 99.7 1.3E-16 2.8E-21 186.9 12.2 149 396-551 19-239 (556)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2E-16 4.2E-21 185.2 12.5 149 396-550 334-519 (552)
313 PRK11819 putative ABC transpor 99.7 2.4E-16 5.1E-21 184.7 12.6 149 396-550 336-521 (556)
314 PLN03211 ABC transporter G-25; 99.7 2.2E-16 4.7E-21 188.0 12.4 157 396-554 80-289 (659)
315 COG4175 ProV ABC-type proline/ 99.7 3.1E-16 6.8E-21 166.6 11.8 155 398-553 42-246 (386)
316 PRK14257 phosphate ABC transpo 99.7 5.9E-16 1.3E-20 170.2 14.3 156 396-554 94-306 (329)
317 COG4133 CcmA ABC-type transpor 99.7 4.1E-16 8.9E-21 155.5 11.2 140 392-533 10-190 (209)
318 TIGR01257 rim_protein retinal- 99.7 3.3E-16 7.2E-21 201.6 13.4 156 396-554 942-1142(2272)
319 PRK13409 putative ATPase RIL; 99.7 3.1E-16 6.8E-21 184.5 12.0 146 397-547 87-286 (590)
320 COG1129 MglA ABC-type sugar tr 99.7 5.4E-16 1.2E-20 175.9 12.8 156 396-553 20-226 (500)
321 PRK10535 macrolide transporter 99.6 7.9E-16 1.7E-20 183.3 13.9 155 397-554 21-225 (648)
322 TIGR01187 potA spermidine/putr 99.6 5.1E-16 1.1E-20 170.4 11.1 92 460-553 88-182 (325)
323 PRK10522 multidrug transporter 99.6 1E-15 2.3E-20 178.9 14.1 155 396-553 335-530 (547)
324 PLN03073 ABC transporter F fam 99.6 8.3E-16 1.8E-20 184.3 13.3 80 467-551 339-420 (718)
325 TIGR00955 3a01204 The Eye Pigm 99.6 6.1E-16 1.3E-20 183.3 11.8 159 395-555 36-250 (617)
326 COG1101 PhnK ABC-type uncharac 99.6 9.1E-16 2E-20 155.8 11.0 159 396-555 18-232 (263)
327 COG4525 TauB ABC-type taurine 99.6 4.5E-16 9.9E-21 155.7 8.5 148 397-545 18-206 (259)
328 TIGR01842 type_I_sec_PrtD type 99.6 9.5E-16 2.1E-20 179.1 12.6 155 396-554 330-535 (544)
329 COG1123 ATPase components of v 99.6 1.3E-15 2.8E-20 174.0 13.0 156 397-554 22-237 (539)
330 COG1123 ATPase components of v 99.6 1.9E-15 4.1E-20 172.6 13.6 156 397-554 304-512 (539)
331 cd03278 ABC_SMC_barmotin Barmo 99.6 1.2E-15 2.5E-20 156.1 10.7 137 402-545 15-188 (197)
332 COG4674 Uncharacterized ABC-ty 99.6 1.4E-15 3.1E-20 152.2 10.8 154 395-552 16-226 (249)
333 PRK13657 cyclic beta-1,2-gluca 99.6 2.2E-15 4.8E-20 177.5 13.8 153 396-553 347-550 (588)
334 COG4148 ModC ABC-type molybdat 99.6 1.7E-15 3.6E-20 158.8 11.1 152 400-554 14-211 (352)
335 COG0444 DppD ABC-type dipeptid 99.6 2.2E-15 4.7E-20 161.8 12.3 156 397-554 18-236 (316)
336 TIGR01194 cyc_pep_trnsptr cycl 99.6 2.4E-15 5.3E-20 176.1 13.3 153 398-553 356-551 (555)
337 COG4988 CydD ABC-type transpor 99.6 1.6E-15 3.4E-20 172.8 11.3 156 395-554 332-536 (559)
338 PRK11174 cysteine/glutathione 99.6 2.7E-15 5.9E-20 176.7 13.7 152 396-553 362-564 (588)
339 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 3.4E-15 7.5E-20 179.0 14.2 152 396-554 465-666 (686)
340 COG3845 ABC-type uncharacteriz 99.6 2.2E-15 4.8E-20 168.3 11.4 154 396-551 16-219 (501)
341 TIGR02203 MsbA_lipidA lipid A 99.6 3E-15 6.4E-20 175.5 13.0 153 396-552 344-547 (571)
342 COG2274 SunT ABC-type bacterio 99.6 2.1E-15 4.5E-20 179.6 11.7 153 397-554 486-689 (709)
343 TIGR00954 3a01203 Peroxysomal 99.6 2.6E-15 5.6E-20 179.2 12.6 145 396-546 464-652 (659)
344 PRK11176 lipid transporter ATP 99.6 3.1E-15 6.8E-20 175.9 12.9 154 396-554 355-560 (582)
345 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 2.9E-15 6.3E-20 180.2 12.9 152 396-554 491-693 (710)
346 TIGR03375 type_I_sec_LssB type 99.6 3.9E-15 8.5E-20 178.7 13.6 153 396-553 477-680 (694)
347 PRK11160 cysteine/glutathione 99.6 3.9E-15 8.3E-20 175.1 13.2 153 397-554 353-555 (574)
348 PRK10790 putative multidrug tr 99.6 4.2E-15 9.1E-20 175.3 13.4 153 396-553 353-555 (592)
349 TIGR01192 chvA glucan exporter 99.6 5.1E-15 1.1E-19 174.5 13.8 153 397-554 348-551 (585)
350 PRK10789 putative multidrug tr 99.6 4.6E-15 1E-19 174.3 13.3 154 396-554 327-531 (569)
351 cd03279 ABC_sbcCD SbcCD and ot 99.6 3.9E-15 8.5E-20 153.7 10.3 147 401-549 18-210 (213)
352 PLN03140 ABC transporter G fam 99.6 3.9E-15 8.4E-20 189.8 12.5 158 396-555 892-1104(1470)
353 KOG0927 Predicted transporter 99.6 2E-15 4.4E-20 169.5 8.6 148 398-552 404-586 (614)
354 TIGR02204 MsbA_rel ABC transpo 99.6 4.2E-15 9.1E-20 174.5 11.3 153 397-554 353-556 (576)
355 COG4608 AppF ABC-type oligopep 99.6 6.4E-15 1.4E-19 155.2 11.3 154 398-554 27-192 (268)
356 TIGR01193 bacteriocin_ABC ABC- 99.6 7.4E-15 1.6E-19 176.7 13.1 153 396-554 486-690 (708)
357 COG4987 CydC ABC-type transpor 99.6 8.5E-15 1.9E-19 164.9 12.0 156 396-555 350-555 (573)
358 TIGR01846 type_I_sec_HlyB type 99.6 9.8E-15 2.1E-19 175.3 13.3 154 396-554 469-673 (694)
359 COG4107 PhnK ABC-type phosphon 99.6 1.5E-14 3.2E-19 142.5 11.8 155 397-554 19-234 (258)
360 cd03271 ABC_UvrA_II The excisi 99.6 1.4E-14 3.1E-19 154.3 12.5 93 460-554 156-259 (261)
361 TIGR00956 3a01205 Pleiotropic 99.6 8.6E-15 1.9E-19 186.8 11.8 157 396-554 775-986 (1394)
362 TIGR00958 3a01208 Conjugate Tr 99.6 1.1E-14 2.4E-19 175.3 12.1 151 397-554 494-695 (711)
363 KOG0057 Mitochondrial Fe/S clu 99.6 2.1E-14 4.5E-19 161.9 12.6 156 395-554 363-567 (591)
364 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1E-14 2.2E-19 150.9 8.8 77 466-545 121-202 (212)
365 TIGR02857 CydD thiol reductant 99.5 2.6E-14 5.7E-19 166.3 12.3 143 397-544 335-528 (529)
366 PTZ00243 ABC transporter; Prov 99.5 2.6E-14 5.6E-19 184.0 13.1 155 396-553 672-862 (1560)
367 KOG0059 Lipid exporter ABCA1 a 99.5 2.2E-14 4.9E-19 176.0 11.5 153 399-553 580-779 (885)
368 cd03240 ABC_Rad50 The catalyti 99.5 3E-14 6.6E-19 146.5 10.7 77 467-545 110-195 (204)
369 TIGR01271 CFTR_protein cystic 99.5 3.2E-14 7E-19 182.8 12.3 154 397-553 439-628 (1490)
370 TIGR00956 3a01205 Pleiotropic 99.5 3E-14 6.4E-19 181.9 11.8 157 396-554 73-293 (1394)
371 KOG0061 Transporter, ABC super 99.5 3.5E-14 7.6E-19 167.8 10.7 157 396-555 42-254 (613)
372 PLN03140 ABC transporter G fam 99.5 2.8E-14 6E-19 182.1 9.7 82 471-554 335-420 (1470)
373 COG4618 ArpD ABC-type protease 99.5 1E-13 2.2E-18 155.1 12.7 154 395-551 347-550 (580)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.5 5.5E-14 1.2E-18 147.3 10.1 75 468-545 154-233 (243)
375 KOG0062 ATPase component of AB 99.5 2.3E-14 4.9E-19 160.4 7.3 148 395-547 91-270 (582)
376 PTZ00265 multidrug resistance 99.5 8.9E-14 1.9E-18 178.0 11.0 77 471-549 578-656 (1466)
377 TIGR02868 CydC thiol reductant 99.5 1.3E-13 2.8E-18 160.5 11.4 132 397-533 348-529 (529)
378 cd03275 ABC_SMC1_euk Eukaryoti 99.5 2.8E-13 6.1E-18 143.0 11.7 73 471-545 154-231 (247)
379 PLN03232 ABC transporter C fam 99.4 3.5E-13 7.6E-18 173.6 13.6 154 397-553 630-820 (1495)
380 COG1132 MdlB ABC-type multidru 99.4 2.8E-13 6.1E-18 159.1 11.6 154 396-554 341-545 (567)
381 COG4136 ABC-type uncharacteriz 99.4 2.1E-13 4.5E-18 131.7 8.2 141 395-537 13-199 (213)
382 KOG0055 Multidrug/pheromone ex 99.4 4.3E-13 9.3E-18 163.6 12.9 153 396-552 365-567 (1228)
383 TIGR00957 MRP_assoc_pro multi 99.4 2.7E-13 5.9E-18 174.8 11.8 155 397-553 651-842 (1522)
384 PLN03130 ABC transporter C fam 99.4 5.4E-13 1.2E-17 172.4 13.6 155 397-553 630-820 (1622)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.4 5.2E-13 1.1E-17 141.2 10.9 75 468-545 162-241 (251)
386 cd03276 ABC_SMC6_euk Eukaryoti 99.4 3.9E-13 8.4E-18 137.7 9.5 77 466-543 103-186 (198)
387 KOG0927 Predicted transporter 99.4 9.9E-13 2.1E-17 148.1 12.8 152 394-550 85-297 (614)
388 PTZ00265 multidrug resistance 99.4 7.8E-13 1.7E-17 169.4 13.3 77 473-551 1359-1441(1466)
389 KOG0066 eIF2-interacting prote 99.4 5E-13 1.1E-17 146.3 9.1 152 392-550 595-779 (807)
390 COG4778 PhnL ABC-type phosphon 99.4 9.4E-13 2E-17 129.6 9.3 146 397-544 24-224 (235)
391 cd03239 ABC_SMC_head The struc 99.4 1.1E-12 2.5E-17 132.2 9.6 131 411-547 24-172 (178)
392 COG4615 PvdE ABC-type sideroph 99.4 1.1E-12 2.5E-17 142.8 9.8 154 398-552 337-528 (546)
393 PLN03130 ABC transporter C fam 99.4 1.9E-12 4.1E-17 167.4 13.5 152 397-553 1252-1453(1622)
394 PLN03232 ABC transporter C fam 99.4 1.7E-12 3.7E-17 167.2 13.1 152 397-553 1249-1450(1495)
395 TIGR01271 CFTR_protein cystic 99.4 2.6E-12 5.7E-17 165.4 14.5 151 396-552 1231-1431(1490)
396 COG4138 BtuD ABC-type cobalami 99.4 4.4E-13 9.5E-18 132.4 5.4 149 402-554 17-214 (248)
397 KOG0058 Peptide exporter, ABC 99.4 1.1E-12 2.4E-17 152.5 9.7 156 395-554 479-684 (716)
398 COG4172 ABC-type uncharacteriz 99.4 2.4E-12 5.2E-17 140.8 11.1 155 397-555 300-510 (534)
399 PTZ00243 ABC transporter; Prov 99.3 3.5E-12 7.6E-17 164.6 13.5 152 397-553 1323-1525(1560)
400 PF00005 ABC_tran: ABC transpo 99.3 1.7E-12 3.7E-17 123.6 7.4 100 400-500 1-137 (137)
401 TIGR00957 MRP_assoc_pro multi 99.3 4.9E-12 1.1E-16 163.4 13.3 152 397-553 1299-1500(1522)
402 COG4172 ABC-type uncharacteriz 99.3 7.8E-12 1.7E-16 136.9 12.7 155 396-552 22-238 (534)
403 COG1245 Predicted ATPase, RNas 99.3 6.6E-12 1.4E-16 139.0 11.8 132 406-540 97-280 (591)
404 cd03277 ABC_SMC5_euk Eukaryoti 99.3 4.7E-12 1E-16 131.2 8.7 71 469-541 123-201 (213)
405 TIGR00630 uvra excinuclease AB 99.3 9.1E-12 2E-16 152.3 12.5 87 466-554 822-918 (924)
406 COG1245 Predicted ATPase, RNas 99.3 7.6E-12 1.7E-16 138.5 10.3 142 407-555 365-532 (591)
407 PRK00635 excinuclease ABC subu 99.2 2.6E-11 5.6E-16 154.8 13.0 93 460-554 796-899 (1809)
408 PRK00349 uvrA excinuclease ABC 99.2 3.1E-11 6.7E-16 147.9 12.8 87 466-554 824-920 (943)
409 KOG0056 Heavy metal exporter H 99.2 4.3E-11 9.3E-16 133.1 10.5 156 394-554 548-754 (790)
410 COG4178 ABC-type uncharacteriz 99.2 5.7E-11 1.2E-15 137.9 10.4 145 395-542 404-583 (604)
411 KOG0062 ATPase component of AB 99.2 4.4E-11 9.6E-16 134.3 7.9 133 412-551 393-558 (582)
412 KOG0055 Multidrug/pheromone ex 99.2 1.2E-10 2.6E-15 142.7 11.5 156 394-554 1000-1206(1228)
413 KOG2355 Predicted ABC-type tra 99.1 2.4E-10 5.2E-15 115.8 11.0 156 396-552 26-228 (291)
414 KOG0065 Pleiotropic drug resis 99.1 2.8E-11 6.2E-16 148.1 4.6 155 397-553 804-1013(1391)
415 COG4167 SapF ABC-type antimicr 99.1 6.8E-10 1.5E-14 110.8 12.3 80 475-555 153-233 (267)
416 COG2401 ABC-type ATPase fused 99.1 5.3E-10 1.2E-14 122.9 11.6 141 396-537 395-572 (593)
417 cd03241 ABC_RecN RecN ATPase i 99.0 7.9E-10 1.7E-14 118.9 10.4 74 473-549 171-249 (276)
418 KOG0060 Long-chain acyl-CoA tr 99.0 7.9E-10 1.7E-14 125.9 10.4 145 396-545 447-639 (659)
419 KOG0066 eIF2-interacting prote 99.0 7E-10 1.5E-14 122.1 8.9 73 472-549 412-486 (807)
420 COG5265 ATM1 ABC-type transpor 99.0 2.1E-09 4.5E-14 118.8 10.4 154 394-554 273-479 (497)
421 PF05192 MutS_III: MutS domain 99.0 5.4E-09 1.2E-13 105.9 12.3 186 52-291 2-204 (204)
422 KOG0054 Multidrug resistance-a 98.9 2.1E-09 4.6E-14 134.5 10.7 156 396-554 533-724 (1381)
423 KOG0064 Peroxisomal long-chain 98.9 7.6E-09 1.6E-13 116.6 10.9 142 394-540 492-676 (728)
424 COG4170 SapD ABC-type antimicr 98.8 1E-08 2.3E-13 104.2 8.2 75 475-550 162-237 (330)
425 PF02463 SMC_N: RecF/RecN/SMC 98.8 4.8E-08 1E-12 100.9 12.9 71 472-545 136-211 (220)
426 cd03242 ABC_RecF RecF is a rec 98.8 1.6E-08 3.6E-13 108.4 9.7 59 487-550 208-269 (270)
427 COG1129 MglA ABC-type sugar tr 98.8 2.4E-08 5.3E-13 114.2 11.2 151 399-552 274-481 (500)
428 PRK00635 excinuclease ABC subu 98.8 2.6E-08 5.7E-13 127.9 12.1 83 470-554 1697-1789(1809)
429 COG3910 Predicted ATPase [Gene 98.8 2.2E-08 4.8E-13 100.6 8.3 57 480-538 137-193 (233)
430 TIGR02858 spore_III_AA stage I 98.7 3.1E-08 6.7E-13 106.4 9.3 117 410-539 112-235 (270)
431 COG0178 UvrA Excinuclease ATPa 98.7 1E-07 2.2E-12 112.5 11.4 72 470-543 820-895 (935)
432 KOG0054 Multidrug resistance-a 98.6 1.2E-07 2.7E-12 119.0 11.6 155 394-551 1150-1352(1381)
433 PRK08533 flagellar accessory p 98.6 2.3E-07 4.9E-12 97.5 10.8 142 407-553 22-184 (230)
434 PF13304 AAA_21: AAA domain; P 98.6 1.2E-07 2.6E-12 96.0 7.6 60 474-535 238-301 (303)
435 TIGR00630 uvra excinuclease AB 98.6 1.3E-07 2.8E-12 116.3 8.8 95 458-554 472-576 (924)
436 KOG0063 RNAse L inhibitor, ABC 98.5 2.8E-07 6.1E-12 102.2 9.7 131 407-538 365-522 (592)
437 PRK00349 uvrA excinuclease ABC 98.5 1.8E-07 3.9E-12 115.3 8.8 96 457-554 473-578 (943)
438 PRK13695 putative NTPase; Prov 98.5 1.7E-07 3.7E-12 93.7 6.0 62 485-550 92-153 (174)
439 cd01120 RecA-like_NTPases RecA 98.3 1.7E-06 3.8E-11 83.2 8.6 122 411-534 1-138 (165)
440 PRK07721 fliI flagellum-specif 98.3 2.2E-06 4.7E-11 98.0 10.6 153 396-555 145-337 (438)
441 cd01124 KaiC KaiC is a circadi 98.3 1.5E-06 3.3E-11 86.8 8.3 47 487-535 93-142 (187)
442 PRK06067 flagellar accessory p 98.3 3.4E-06 7.5E-11 88.3 10.1 143 407-553 23-186 (234)
443 smart00382 AAA ATPases associa 98.2 9.8E-06 2.1E-10 74.6 10.2 25 409-433 2-26 (148)
444 cd01131 PilT Pilus retraction 98.2 3.4E-06 7.4E-11 86.5 7.2 117 411-543 3-119 (198)
445 TIGR00634 recN DNA repair prot 98.1 1.6E-05 3.5E-10 94.0 11.8 114 472-594 440-561 (563)
446 KOG0065 Pleiotropic drug resis 98.1 5.6E-06 1.2E-10 102.7 7.6 156 398-554 129-344 (1391)
447 PRK10869 recombination and rep 98.0 2.5E-05 5.4E-10 92.2 12.0 113 473-594 431-551 (553)
448 TIGR02788 VirB11 P-type DNA tr 98.0 3E-06 6.6E-11 92.8 4.1 129 407-551 142-271 (308)
449 KOG0063 RNAse L inhibitor, ABC 98.0 9.2E-06 2E-10 90.4 7.7 66 472-539 213-279 (592)
450 TIGR00618 sbcc exonuclease Sbc 97.9 1.8E-05 3.8E-10 100.1 6.8 76 468-545 946-1033(1042)
451 PRK03918 chromosome segregatio 97.8 3.9E-05 8.5E-10 95.1 8.6 76 469-546 785-867 (880)
452 COG3845 ABC-type uncharacteriz 97.8 0.0001 2.2E-09 83.9 10.4 152 398-551 272-482 (501)
453 TIGR01420 pilT_fam pilus retra 97.8 4.5E-05 9.8E-10 84.9 7.1 118 408-541 121-238 (343)
454 cd00820 PEPCK_HprK Phosphoenol 97.8 2.1E-05 4.6E-10 73.2 3.6 34 397-430 2-36 (107)
455 PRK01156 chromosome segregatio 97.7 6.3E-05 1.4E-09 93.7 8.9 77 469-546 798-883 (895)
456 PF13555 AAA_29: P-loop contai 97.7 2.7E-05 5.9E-10 65.4 3.2 31 401-431 15-45 (62)
457 cd00009 AAA The AAA+ (ATPases 97.7 0.00013 2.7E-09 68.1 7.5 25 408-432 18-42 (151)
458 PHA02562 46 endonuclease subun 97.7 6.3E-05 1.4E-09 88.6 6.7 75 469-547 465-551 (562)
459 cd01125 repA Hexameric Replica 97.6 0.0002 4.4E-09 75.3 8.8 45 487-533 109-159 (239)
460 TIGR00606 rad50 rad50. This fa 97.6 0.00021 4.5E-09 92.4 10.3 68 471-539 1198-1277(1311)
461 PRK13830 conjugal transfer pro 97.6 0.00036 7.8E-09 86.1 11.8 48 487-536 650-698 (818)
462 cd01130 VirB11-like_ATPase Typ 97.5 0.0001 2.3E-09 74.7 5.4 26 407-432 23-48 (186)
463 PRK04296 thymidine kinase; Pro 97.5 0.00068 1.5E-08 69.2 10.9 144 409-565 2-158 (190)
464 PRK10246 exonuclease subunit S 97.5 0.00017 3.7E-09 91.2 7.9 68 468-537 945-1021(1047)
465 PTZ00132 GTP-binding nuclear p 97.5 0.00016 3.4E-09 74.5 6.2 36 483-519 164-204 (215)
466 PRK06793 fliI flagellum-specif 97.5 0.00012 2.6E-09 83.5 5.6 140 404-551 150-301 (432)
467 TIGR01026 fliI_yscN ATPase Fli 97.5 0.00047 1E-08 79.2 10.4 54 499-555 282-342 (440)
468 TIGR02168 SMC_prok_B chromosom 97.5 0.00015 3.3E-09 91.8 6.8 76 468-546 1085-1165(1179)
469 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.0012 2.7E-08 68.6 12.4 64 489-553 121-188 (229)
470 PRK06893 DNA replication initi 97.5 0.001 2.2E-08 69.8 11.8 93 410-533 40-134 (229)
471 PRK09183 transposase/IS protei 97.4 0.00037 8E-09 74.7 8.4 105 406-532 99-205 (259)
472 PRK14721 flhF flagellar biosyn 97.4 0.00037 8.1E-09 79.4 8.6 91 407-507 189-285 (420)
473 PRK10865 protein disaggregatio 97.4 0.0047 1E-07 76.8 18.4 117 410-536 200-320 (857)
474 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.0014 3E-08 79.2 13.2 31 402-432 21-51 (650)
475 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0012 2.5E-08 68.9 11.0 26 407-432 17-42 (235)
476 PF00004 AAA: ATPase family as 97.4 0.00078 1.7E-08 62.9 8.5 20 412-431 1-20 (132)
477 PTZ00454 26S protease regulato 97.3 0.001 2.2E-08 75.7 10.4 22 410-431 180-201 (398)
478 PLN03210 Resistant to P. syrin 97.3 0.00046 9.9E-09 88.4 8.4 24 407-430 205-228 (1153)
479 PRK14088 dnaA chromosomal repl 97.3 0.002 4.4E-08 74.2 12.3 170 411-609 132-310 (440)
480 cd02023 UMPK Uridine monophosp 97.3 6.6E-05 1.4E-09 76.5 0.1 22 411-432 1-22 (198)
481 cd01128 rho_factor Transcripti 97.3 0.00035 7.7E-09 74.5 5.6 67 478-550 144-211 (249)
482 TIGR03015 pepcterm_ATPase puta 97.3 0.0012 2.6E-08 70.1 9.6 23 408-430 42-64 (269)
483 PRK13898 type IV secretion sys 97.2 0.0023 4.9E-08 79.1 12.9 49 487-536 640-688 (800)
484 PRK14723 flhF flagellar biosyn 97.2 0.00081 1.8E-08 81.4 8.5 90 407-504 183-279 (767)
485 PRK11889 flhF flagellar biosyn 97.2 0.0021 4.5E-08 72.6 10.6 25 408-432 240-264 (436)
486 PRK13891 conjugal transfer pro 97.1 0.004 8.7E-08 77.4 13.8 49 487-537 685-734 (852)
487 PRK06995 flhF flagellar biosyn 97.1 0.00025 5.5E-09 82.0 3.1 28 407-434 254-281 (484)
488 PRK06921 hypothetical protein; 97.1 0.0027 5.9E-08 68.4 10.3 101 408-532 116-224 (266)
489 PF13481 AAA_25: AAA domain; P 97.1 0.0031 6.8E-08 63.5 10.2 26 407-432 30-55 (193)
490 cd01122 GP4d_helicase GP4d_hel 97.1 0.0032 7E-08 67.2 10.7 36 396-431 16-52 (271)
491 PRK02224 chromosome segregatio 97.1 0.00092 2E-08 83.2 7.4 55 491-546 813-867 (880)
492 PRK14087 dnaA chromosomal repl 97.1 0.0035 7.6E-08 72.5 11.6 104 411-533 143-249 (450)
493 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00021 4.6E-09 81.9 1.6 30 398-427 20-50 (504)
494 PRK06526 transposase; Provisio 97.1 0.002 4.4E-08 68.9 8.8 104 407-532 96-200 (254)
495 PF09818 ABC_ATPase: Predicted 97.1 0.0019 4.1E-08 73.2 8.9 142 407-549 243-415 (448)
496 PRK13873 conjugal transfer ATP 97.0 0.0042 9.1E-08 76.9 12.7 49 487-536 633-681 (811)
497 PTZ00361 26 proteosome regulat 97.0 0.0024 5.1E-08 73.5 9.8 22 410-431 218-239 (438)
498 PRK14722 flhF flagellar biosyn 97.0 0.00033 7E-09 78.8 2.7 95 399-501 126-227 (374)
499 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0092 2E-07 74.1 15.5 21 412-432 211-231 (852)
500 cd01393 recA_like RecA is a b 97.0 0.0026 5.6E-08 65.9 9.1 27 407-433 17-43 (226)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=1.8e-94 Score=861.54 Aligned_cols=632 Identities=33% Similarity=0.510 Sum_probs=534.8
Q ss_pred hhHHHHhhcCHHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003747 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (798)
Q Consensus 49 m~~~~l~~Le~~~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (798)
|++++++.|||++|+++|+.||.|++|++++..+.| ..++++++++|++|.++..++...+ .++|+++.| ++..+
T Consensus 1 m~~~~~~~Le~~~i~~~l~~~~~t~~Gk~~l~~l~P--~~~~~~i~~~l~~~~e~~~~~~~~~-~~~l~~~~D--i~~~l 75 (782)
T PRK00409 1 MQEKTLRVLEFNKIKEQLKTFAASELGKEKVLQLDP--ETDFEEVEELLEETDEAAKLLRLKG-LPPFEGVKD--IDDAL 75 (782)
T ss_pred CChhhHhhCCHHHHHHHHHhHcCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCcc--HHHHH
Confidence 677899999999999999999999999999999644 4799999999999999998886654 678999985 99999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHhhccchHHH------------------------
Q 003747 129 REVRRASPLRPNEALAVVALLQFSETLQLSLRAA-----IKEDADLYIRFMPLTQM------------------------ 179 (798)
Q Consensus 129 ~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~-----~~~~~~~~~~l~~~~~l------------------------ 179 (798)
.++.+|++|++.||..|..+|..+..+++++... ...+..+...+.++.++
T Consensus 76 ~r~~~g~~l~~~eL~~i~~~l~~~~~l~~~l~~~~~~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS~eL~~ 155 (782)
T PRK00409 76 KRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDLEEEEELPILEEWVAKIRTLPELEQEIHNCIDEEGEVKDSASEKLRG 155 (782)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHcCcCcHHHHHHHHHHhCCCCEECCCCCHHHHH
Confidence 9999999999999999999999999999988531 11223333333333332
Q ss_pred -----------HHHHHHHHHhhhcccccee--eeeeECCEEEEEecCCcc-CCCcEEE--eeecCeEEEecccccccHHH
Q 003747 180 -----------LYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLNDE 243 (798)
Q Consensus 180 -----------i~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~~-~~~Giv~--~~sg~t~~ieP~~~v~lnn~ 243 (798)
|++.+++++++.....+++ .+|+|+|||||||+++++ .+||+|| |+||+|+|+||.+++++||+
T Consensus 156 iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~~ln~~ 235 (782)
T PRK00409 156 IRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVVELNNE 235 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHHHHHHH
Confidence 5566677777666556776 799999999999999999 9999999 56999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCccccccccCCCCcccccc
Q 003747 244 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVS 323 (798)
Q Consensus 244 l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 323 (798)
+.++..++++++.+|+++|+..+..+.+.|..+++.+++||+++|+|+||.+++||+|.++.
T Consensus 236 l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~------------------ 297 (782)
T PRK00409 236 IRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFND------------------ 297 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeE
Q 003747 324 SSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI 403 (798)
Q Consensus 324 ~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~di 403 (798)
+..+.+.++|||+|. ...+||||+
T Consensus 298 ----~~~i~l~~~rHPll~----------------------------------------------------~~~~Vpndi 321 (782)
T PRK00409 298 ----EGKIDLRQARHPLLD----------------------------------------------------GEKVVPKDI 321 (782)
T ss_pred ----CCcEEEcCcCCceec----------------------------------------------------cCceECcee
Confidence 235999999999993 135899999
Q ss_pred EECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHH
Q 003747 404 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 483 (798)
Q Consensus 404 sL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~i 483 (798)
.++.++++++|||||||||||+||++|++++|+|+|+|+|+...+.+++|+++|.++|+.+++..++|+||++|+++..+
T Consensus 322 ~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 322 SLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred EECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 99987899999999999999999999999999999999999556799999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecccceeeEEe
Q 003747 484 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 563 (798)
Q Consensus 484 l~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~~l~ptY~L 563 (798)
+..+++|+|+||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++.....+.|++|.||.+++.|+|++
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~-vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Ykl 480 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAK-IIATTHYKELKALMYNREGVENASVEFDEETLRPTYRL 480 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEEE
Confidence 99899999999999999999999999999999999888887 99999999999988888899999999999999999999
Q ss_pred ecCCCCCchHHHHHHHcCCChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 564 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI 643 (798)
Q Consensus 564 ~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~~le~~I~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l 643 (798)
..|+||.|||++||+++|+|++|+++|++++..+..+++++|++|++++.+++++.+++++.++++++++++++.+.+++
T Consensus 481 ~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 481 LIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred eeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877777776666666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHhhhhh---ccccchhhccccccccccccc
Q 003747 644 LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSAS---QSLHCTKVGKNQHVLTSNFQQ 720 (798)
Q Consensus 644 ~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 720 (798)
+ +++.+++++++++|++++++++++ +++++.+ +++..+ .........+.++. +.+
T Consensus 561 ~-------~~~~~~~~~~~~~a~~~l~~a~~~-------~~~~i~~----lk~~~~~~~~~~~~~~~~~~~~~----l~~ 618 (782)
T PRK00409 561 Q-------EEEDKLLEEAEKEAQQAIKEAKKE-------ADEIIKE----LRQLQKGGYASVKAHELIEARKR----LNK 618 (782)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----HHHhhhcccchhhHHHHHHHHHH----HHH
Confidence 4 466778888888888888888777 7776643 332110 00000011111110 000
Q ss_pred cccccccCccccCccccccccCCccccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCee
Q 003747 721 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 796 (798)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~ 796 (798)
...... . .... .......+++||.|+|.++|+.|+|+++++ ++.++||+|+|||+|+.++|+
T Consensus 619 ---~~~~~~-----~----~~~~-~~~~~~~~~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 619 ---ANEKKE-----K----KKKK-QKEKQEELKVGDEVKYLSLGQKGEVLSIPD-DKEAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred ---hhhhhh-----h----cccc-ccccccCCCCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHce
Confidence 000000 0 0000 001114699999999999999999999974 458999999999999999985
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=4.7e-93 Score=847.45 Aligned_cols=625 Identities=31% Similarity=0.452 Sum_probs=529.5
Q ss_pred hhHHHHhhcCHHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003747 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (798)
Q Consensus 49 m~~~~l~~Le~~~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (798)
|++++++.|||++|++.|+.||.|++|++++..+.| .+++.+++++|++|.+|..+.. ++||+++.| ++..+
T Consensus 1 m~~~~l~~Lef~~i~~~l~~~~~t~~gk~~~~~l~P--~~~~~~i~~~l~~~~e~~~~~~----~~~l~~~~d--i~~~l 72 (771)
T TIGR01069 1 MREKDLIKLEFDKVKENLLKQTFTPLGKEDAIGLKP--PKSVEESKEIIIKLTALGSIEN----NVRFFGFED--IRELL 72 (771)
T ss_pred CChhhHHhcCHHHHHHHHHHHcCCHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhhc----cCCcCCCcc--HHHHH
Confidence 678999999999999999999999999999999654 4789999999999999999876 568999984 99999
Q ss_pred HHhhhCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH--hhhhHHHHhhccchHHH--------------------------
Q 003747 129 REVRRASPLRPNE-ALAVVALLQFSETLQLSLRAA--IKEDADLYIRFMPLTQM-------------------------- 179 (798)
Q Consensus 129 ~~~~~g~~L~~~e-l~~i~~~l~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~l-------------------------- 179 (798)
.+++.|++|++.| |+.|+.+|..+..++.++... +..+..++..+.++.++
T Consensus 73 ~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~~l~~~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS~~L~~ir 152 (771)
T TIGR01069 73 KRAELGGIVKGLEYILVIQNALKTVKHLKVLSEHVLDLEILFHLRLNLITLPPLENDIIACIDDDGKVKDGASEELDAIR 152 (771)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHhcCCCcHHHHHHHHHHhCCCCEECCCcCHHHHHHH
Confidence 9999999999988 999999999999999888521 11112222222222222
Q ss_pred ---------HHHHHHHHHhhhcccccee--eeeeECCEEEEEecCCcc-CCCcEEE--eeecCeEEEecccccccHHHHH
Q 003747 180 ---------LYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLNDELQ 245 (798)
Q Consensus 180 ---------i~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~~-~~~Giv~--~~sg~t~~ieP~~~v~lnn~l~ 245 (798)
|++.+++++++.....++| .||+|+||||||||++|+ ++||+|| |+||+|+|+||.++|++||++.
T Consensus 153 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l~ 232 (771)
T TIGR01069 153 ESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKLA 232 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHHH
Confidence 5667778787766566777 599999999999999999 9999999 5599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCccccccccCCCCccccccCC
Q 003747 246 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS 325 (798)
Q Consensus 246 ~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 325 (798)
+++.++++++.+||++|+..|.++.+.|..+++.+++||+++|+|+||..+++++|.+..
T Consensus 233 ~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~-------------------- 292 (771)
T TIGR01069 233 QLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSF-------------------- 292 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecC--------------------
Confidence 999999999999999999999999999999999999999999999999999999999863
Q ss_pred cccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEE
Q 003747 326 EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFI 405 (798)
Q Consensus 326 ~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL 405 (798)
.+.+.+.++|||++. ...+||+|+.+
T Consensus 293 --~~~i~l~~~rhPll~----------------------------------------------------~~~~vp~di~l 318 (771)
T TIGR01069 293 --TGKIILENARHPLLK----------------------------------------------------EPKVVPFTLNL 318 (771)
T ss_pred --CCCEEEccccCceec----------------------------------------------------CCceEeceeEe
Confidence 136999999999983 12489999999
Q ss_pred CCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHH
Q 003747 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 485 (798)
Q Consensus 406 ~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~ 485 (798)
+.+.++++|+||||||||||||+|+++.+|+++|+++|+.....+++|++++.++++.+++..++|+||++|.++..++.
T Consensus 319 ~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 319 KFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred CCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 97668899999999999999999999999999999999966678999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecccceeeEEeec
Q 003747 486 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 565 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~~l~ptY~L~~ 565 (798)
.+++|+|+||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++.....+.|++|.||.+++.|+|+|.+
T Consensus 399 ~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~-viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~ 477 (771)
T TIGR01069 399 KTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQ-VLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLK 477 (771)
T ss_pred hcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECC
Confidence 899999999999999999999999999999999988887 9999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHcCCChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 566 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILE 645 (798)
Q Consensus 566 G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~~le~~I~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 645 (798)
|+||.|||+.||+++|+|++|+++|++++.....+++++|++|++++.+++++..++++.++++++.+++++++.++
T Consensus 478 G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~--- 554 (771)
T TIGR01069 478 GIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE--- 554 (771)
T ss_pred CCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999998887777666666666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHhhhhhccccchhhcccccccccccccccccc
Q 003747 646 HCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK 725 (798)
Q Consensus 646 ~~~~~~~~~~~~~~~a~~~a~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (798)
+++++.+++++|+++|++++++++++ ++.+++ ++++.... .....+.++.+ .. ..
T Consensus 555 ----l~~~~~~~~~~a~~ea~~~~~~a~~~-------~~~~i~----~lk~~~~~---~~~~~~~~~~~-~~------~~ 609 (771)
T TIGR01069 555 ----LKERERNKKLELEKEAQEALKALKKE-------VESIIR----ELKEKKIH---KAKEIKSIEDL-VK------LK 609 (771)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHhcccc---HHHHHHHHHHH-HH------HH
Confidence 44566888889999999999988777 777663 34432110 00111111100 00 00
Q ss_pred ccCccccCccccccccCCccccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCee
Q 003747 726 VEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 796 (798)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~ 796 (798)
. ... . ....+ ...... ++||.|+|.++|+.|+|+++++ ++.|+||+|+|||+|++++|+
T Consensus 610 ~-~~~-----~---~~~~~-~~~~~~-~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~ 668 (771)
T TIGR01069 610 E-TKQ-----K---IPQKP-TNFQAD-KIGDKVRIRYFGQKGKIVQILG-GNKWNVTVGGMRMKVHGSELE 668 (771)
T ss_pred H-hhc-----c---ccccc-cccccC-CCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHce
Confidence 0 000 0 00000 001133 8999999999999999999974 578999999999999999985
No 3
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-80 Score=726.49 Aligned_cols=615 Identities=33% Similarity=0.451 Sum_probs=525.3
Q ss_pred HHHhhcCHHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHHHHh
Q 003747 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREV 131 (798)
Q Consensus 52 ~~l~~Le~~~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (798)
++|+.||||||+++|+.||.|+.|++.+.++.| ..+...++..+++|.++..++...| .++++++.+ ++..+.++
T Consensus 2 ~~l~~le~~k~k~~~~~~~~s~~g~~~~~~l~p--~~~~~~i~~~~~e~~~~~~~~~~~g-~~~~~~l~~--i~~~l~~~ 76 (753)
T COG1193 2 KTLEMLEFDKIKELLASYAQSSLGLEELKNLKP--RTDLELIEEELSETAEALDILEDEG-LPPLGGLND--VSEALGRL 76 (753)
T ss_pred chHhhccchHHHHHHHHhccCHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHHHhccC-CCCchhhhh--hHHHHHHH
Confidence 689999999999999999999999999999766 4789999999999999999997644 688999985 99999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----------------------------------Hhhccch
Q 003747 132 RRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-----------------------------------YIRFMPL 176 (798)
Q Consensus 132 ~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~~~~~~~-----------------------------------~~~l~~~ 176 (798)
.+|+.|.++||+.|..+|..++.+++++...-...... ...++.+
T Consensus 77 e~g~~l~~~el~~i~~~l~~~~~lkr~~~~~e~~~~~~~~~~~~~~~l~~~i~~~id~~g~i~d~as~~l~~ir~~lr~~ 156 (753)
T COG1193 77 EKGGRLHVEELLEISDFLRGFRALKRAIKKLERIKRTLALALIELSDLELEINIPIDDDGLIKDRASFELDAIRRQLRDL 156 (753)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHhhhhcccccccccccHHHHHHHhhhHHH
Confidence 99999999999999999999999999886421000111 1122223
Q ss_pred HHHHHHHHHHHHhhhcccccee--eeeeECCEEEEEecCCcc-CCCcEEE--eeecCeEEEecccccccHHHHHHHHHHH
Q 003747 177 TQMLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLNDELQQARASV 251 (798)
Q Consensus 177 ~~li~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~~-~~~Giv~--~~sg~t~~ieP~~~v~lnn~l~~l~~~~ 251 (798)
...|++.++.+++.+. ..+++ .||.||||||+|||++|+ .++|||| |+||+|+|+||..+|.+||++.++..++
T Consensus 157 ~~~i~~~l~~~~~~~~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE 235 (753)
T COG1193 157 EEEIRDKLESLIRSKE-AKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATLYIEPRSVVKLNNELRALLVEE 235 (753)
T ss_pred HHHHHHHHHHHHhhhh-hHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCeeeecchHHHhhccHhhhhhccc
Confidence 3337788888888764 55666 699999999999999999 9999999 5689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCccccccccCCCCccccccCCcccceE
Q 003747 252 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTI 331 (798)
Q Consensus 252 ~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 331 (798)
+.++++|+++|+..+.++.+.+..+...+++||++.|+++|+.++.++.|.+++ .+.+
T Consensus 236 ~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~----------------------~~~l 293 (753)
T COG1193 236 DEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSN----------------------DGVL 293 (753)
T ss_pred hHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCC----------------------CceE
Confidence 999999999999999999999999999999999999999999999999999973 2469
Q ss_pred EecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEECCCCeE
Q 003747 332 YLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 411 (798)
Q Consensus 332 ~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i 411 (798)
.+.++|||++. ..|++++.+..+-..
T Consensus 294 ~l~~~~HPll~------------------------------------------------------~~v~~~i~~~~e~~~ 319 (753)
T COG1193 294 ELLDARHPLLK------------------------------------------------------EDVPNDLELGEELDR 319 (753)
T ss_pred EeccccCccCc------------------------------------------------------cccccccccccccce
Confidence 99999999993 238999999977778
Q ss_pred EEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCe
Q 003747 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS 491 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~ps 491 (798)
++|||||.+|||++||++|+..+|+|+|.++|+..++.+++|..+|.++|++|++.+.+||||+||.++..++..++ +
T Consensus 320 l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--s 397 (753)
T COG1193 320 LIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--S 397 (753)
T ss_pred eeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--h
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999995544 8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecccceeeEEeecCCCCCc
Q 003747 492 LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 571 (798)
Q Consensus 492 LLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~~l~ptY~L~~G~~g~S 571 (798)
|+++||.++||||.+|++++.++++++.++++. +++|||+.+++.|+.....+.|++|.||.++++|+|++.+|+||+|
T Consensus 398 Lvl~DElg~GTdp~EgaaLai~ile~l~~~~~~-~~~tTH~~elk~~~~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S 476 (753)
T COG1193 398 LVLFDELGSGTDPDEGAALAIAILEDLLEKPAK-IVATTHYRELKALAAEREGVENASMEFDAETLRPTYRLLEGVPGRS 476 (753)
T ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHhcccc-eehHhhHHHHHHHHhcchhhhchhhhhhHHHhhHHHHHhcCCcccc
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 572 SAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 651 (798)
Q Consensus 572 ~a~~iA~~~gl~~~ii~~A~~~~~~~~~~le~~I~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 651 (798)
|||+||.++|+|..++++|+...+.+...++.+|+.|+....++++..+.++..+.+...++..+......+.+
T Consensus 477 ~Af~ia~rlGl~~~iie~a~~~~g~~~~~~~~~i~~l~~~~~~~~~~~~~~e~~~~e~~~l~~~~s~~~~~l~e------ 550 (753)
T COG1193 477 NAFDIALRLGLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLE------ 550 (753)
T ss_pred hHHHHHHHcCCCHHHHHHHHHhcCchHhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcchhHHHH------
Confidence 99999999999999999999999999999999999999999999999998888777777777777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH-HHHhhhhhccccchhhccccccccccccccccccccCcc
Q 003747 652 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA-QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA 730 (798)
Q Consensus 652 ~~~~~~~~~a~~~a~~~l~~~~~~~~~~~~~a~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (798)
.+.+.+..|..++...+++++.+ +...++... ++....+ . .|+.. ++...
T Consensus 551 -~~~~~~~~a~~~~~~~~~~a~~e-------~~~~i~~~~~~~~~~~~-------------~----~~e~~--~~~~~-- 601 (753)
T COG1193 551 -LKAQIVVLAHMGLPVPAEEAKVE-------AVDEVKFLKKKKGILDA-------------G----AFEST--LKDKK-- 601 (753)
T ss_pred -HHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHhhhhHHHHHH-------------H----HHHHH--hhhhh--
Confidence 44566667777777777776655 554443221 0000000 0 00000 00000
Q ss_pred ccCccccccccCCccccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCeee
Q 003747 731 TASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 797 (798)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~~ 797 (798)
.+..+... ...|++||.|++.+ |+.|.|++|.++..+|.||+|+|||+|+..++++
T Consensus 602 ---------~~~~~~~~-~~~l~~gDev~~~t-~e~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~ 657 (753)
T COG1193 602 ---------NKVLPEAK-KRKLKLGDEVEVIT-GEPGAVVKIIAGILEALVQSGILKVIVSHLDLEI 657 (753)
T ss_pred ---------cccCcccc-ccCceecceeEeec-CCccceeeeeccCceeEEecceeEEEEehhHHHH
Confidence 00001111 35699999999999 9999999999778899999999999999988764
No 4
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=7.8e-59 Score=558.29 Aligned_cols=474 Identities=23% Similarity=0.260 Sum_probs=392.3
Q ss_pred cchhhhhHHHHhhcCHHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCC
Q 003747 44 DKKSRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSC 112 (798)
Q Consensus 44 ~~~~~m~~~~l~~Le~~~---------i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~--~~~~~~~ 112 (798)
..-|.|+..|++.||.-. +...+ .+|.|++|+++++..+..|..|...++++|+.+.++.. .+... .
T Consensus 246 ~~~m~lD~~t~~~LEl~~~~~~~~~gSL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~-l 323 (840)
T TIGR01070 246 QDFMQLDAATRRNLELTENLRGGKQNTLFSVL-DETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREG-L 323 (840)
T ss_pred CCEEEeCHHHHHhccCCccCCCCCCCcHHHHH-hhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHH-H
Confidence 445668999998888643 44444 88999999999988333335899999999999999987 33221 1
Q ss_pred CCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHhhccchHHH------------
Q 003747 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI-KEDADLYIRFMPLTQM------------ 179 (798)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~l------------ 179 (798)
...+.++. |+...+.|+..| ..++.||..+..+|..+..++..+...- .....+...+.++.++
T Consensus 324 ~~~L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~ 400 (840)
T TIGR01070 324 RPLLKEVG--DLERLAARVALG-NARPRDLARLRTSLEQLPELRALLEELEGPTLQALAAQIDDFSELLELLEAALIENP 400 (840)
T ss_pred HHHhccCc--CHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 33577886 488899998877 6899999999999999999988775320 0111111122211111
Q ss_pred --------------------HHHHH-------HHHHhhhccc---cceeeeeeECCEEEEEecCCcc-CCCc-EEEe--e
Q 003747 180 --------------------LYQLM-------DMLIRNENNE---SLFLEVSSIHGRLCIRTGADQL-SFKG-LLLS--S 225 (798)
Q Consensus 180 --------------------i~~~l-------~~~~~~~~~~---~~~~~vt~r~gR~vipVk~~~~-~~~G-iv~~--~ 225 (798)
+|+.. +.+....+.. ..+...-...++|+|+|+.++. ++|| ++|. .
T Consensus 401 ~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~ 480 (840)
T TIGR01070 401 PLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTL 480 (840)
T ss_pred ccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEec
Confidence 22211 1111111100 0111122357899999999998 9998 6663 4
Q ss_pred ecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Q 003747 226 SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 305 (798)
Q Consensus 226 sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~ 305 (798)
+|.+.|++|. ++++|+++.+++.++.+++.+|+.+|...+..+.+.|..+.+.+++||+++|+|.+|.+++||+|.+++
T Consensus 481 ~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~ 559 (840)
T TIGR01070 481 KNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGD 559 (840)
T ss_pred cCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecC
Confidence 7888999998 999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCC
Q 003747 306 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSP 385 (798)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (798)
+..+.++++|||+++...
T Consensus 560 ----------------------~~~i~i~~~RHP~le~~~---------------------------------------- 577 (840)
T TIGR01070 560 ----------------------DPQLRIREGRHPVVEQVL---------------------------------------- 577 (840)
T ss_pred ----------------------CCcEEEEeeECHHHHhcc----------------------------------------
Confidence 235999999999995310
Q ss_pred chhhhhhhcCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhh
Q 003747 386 SEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS 465 (798)
Q Consensus 386 ~~~~~~~~~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~s 465 (798)
+..+||||+.++.+.++++|||||+|||||+||++|++++|+|+|+|||| ..+.++++|+||+++|..|+
T Consensus 578 ---------~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA-~~a~i~~~D~Iftrig~~d~ 647 (840)
T TIGR01070 578 ---------RTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPA-ESAELPLFDRIFTRIGASDD 647 (840)
T ss_pred ---------CCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccc-hheEeccccEEEEecCcccc
Confidence 13589999999977789999999999999999999999999999999999 67999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccc
Q 003747 466 LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 466 i~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
+..+.|||+.||.++..|+..+++++|+||||+|+|||+.+|.+++++++++|.+ .|+. +|++||++++..++.....
T Consensus 648 i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~-~~~~TH~~eL~~l~~~~~~ 726 (840)
T TIGR01070 648 LASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAK-TLFATHYFELTALEESLPG 726 (840)
T ss_pred hhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCE-EEEEcCchHHHHHhhhCCC
Confidence 9999999999999999999999999999999999999999999999999999998 6776 8999999999999988889
Q ss_pred eeeeEEEE--ecccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 545 FENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 545 l~ng~v~f--d~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
+.|.+|.+ +.+++.|+|++..|.+++|||+++|++.|+|++|+++|++++..
T Consensus 727 v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~ 780 (840)
T TIGR01070 727 LKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQ 780 (840)
T ss_pred eEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999988 56789999999999999999999999999999999999998743
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.5e-56 Score=540.99 Aligned_cols=476 Identities=22% Similarity=0.276 Sum_probs=391.3
Q ss_pred CcchhhhhHHHHhhcCHHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCC
Q 003747 43 DDKKSRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGS 111 (798)
Q Consensus 43 ~~~~~~m~~~~l~~Le~~~---------i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~--~~~~~~ 111 (798)
...-|.|+..|++.||.-. +...+ .+|.|++|+++++..+..|..|.++++++++.++++.. .+...
T Consensus 259 ~~~~m~lD~~tl~~Lei~~~~~~~~~gSL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~- 336 (854)
T PRK05399 259 ESDYLILDAATRRNLELTENLRGGRKNSLLSVL-DRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLRED- 336 (854)
T ss_pred CCCEEEcCHHHHHhccCCccCCCCCCCcHHHHh-ccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-
Confidence 4555679999998888653 44444 77999999999988333335799999999999998885 22111
Q ss_pred CCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHhhccchHHH-----------
Q 003747 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI-KEDADLYIRFMPLTQM----------- 179 (798)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~l----------- 179 (798)
....+.++. |+...+.|+..| ..++.++..+..+|..+..++..+...- .....+...+..+.++
T Consensus 337 l~~~L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~ 413 (854)
T PRK05399 337 LRELLKGVY--DLERLLSRIALG-RANPRDLAALRDSLEALPELKELLAELDSPLLAELAEQLDPLEELADLLERAIVEE 413 (854)
T ss_pred HHHHHhcCC--CHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHhhcccHHHHHHHHHHHHccC
Confidence 122467776 488888888775 6899999999999999998887774310 0001111111111111
Q ss_pred ---------------------HHH-------HHHHHHhhhccccceeeeeeECCE---EEEEecCCcc-CCCc-EEE--e
Q 003747 180 ---------------------LYQ-------LMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SFKG-LLL--S 224 (798)
Q Consensus 180 ---------------------i~~-------~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~~-~~~G-iv~--~ 224 (798)
+|+ .++.+..+.........++++.+| |+|+|+..+. .+|+ +++ +
T Consensus 414 ~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s 493 (854)
T PRK05399 414 PPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQT 493 (854)
T ss_pred CchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheee
Confidence 222 222222221111111235555555 9999999988 8887 666 3
Q ss_pred eecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 003747 225 SSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 304 (798)
Q Consensus 225 ~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~ 304 (798)
.+|.+.|++|. ++++|+++.+++.++.+++.+|+++|...+..+.+.|..+.+++++||+++|+|.+|..++||+|.++
T Consensus 494 ~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~ 572 (854)
T PRK05399 494 LKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFT 572 (854)
T ss_pred ccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEe
Confidence 47888999998 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCC
Q 003747 305 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLS 384 (798)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (798)
. +..+.++++|||+++...
T Consensus 573 ~----------------------~~~l~i~~~rHP~le~~~--------------------------------------- 591 (854)
T PRK05399 573 D----------------------DPGIDIEEGRHPVVEQVL--------------------------------------- 591 (854)
T ss_pred C----------------------CCCEEEEeccCcEEeccc---------------------------------------
Confidence 4 135999999999995310
Q ss_pred CchhhhhhhcCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchh
Q 003747 385 PSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 464 (798)
Q Consensus 385 ~~~~~~~~~~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~ 464 (798)
.++.+||||+.++.++++++|||||+|||||+||++|++++|+|+|+++|| ..+.++++|++|+++|..|
T Consensus 592 ---------~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa-~~a~i~~~d~I~triga~d 661 (854)
T PRK05399 592 ---------GGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPA-ESARIGIVDRIFTRIGASD 661 (854)
T ss_pred ---------CCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceec-cceEecccCeeeeccCccc
Confidence 134689999999977899999999999999999999999999999999999 7799999999999999999
Q ss_pred hHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccc
Q 003747 465 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 465 si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g-~t~VIitTHd~el~~~a~~~~ 543 (798)
++..+.|||+.+|.++..|+..+++++|+||||||+||++.+|.++++++++++.+.+ ++ +|++||++++..++++..
T Consensus 662 ~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~-~l~aTH~~el~~l~~~~~ 740 (854)
T PRK05399 662 DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAK-TLFATHYHELTELEEKLP 740 (854)
T ss_pred ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCce-EEEEechHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999874 76 899999999999999888
Q ss_pred ceeeeEEEEec--ccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 544 FFENACMEFDE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 544 ~l~ng~v~fd~--~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
.+.|.+|.++. +++.|+|++..|.+++|||+++|++.|+|++|+++|++++..
T Consensus 741 ~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~ 795 (854)
T PRK05399 741 GVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQ 795 (854)
T ss_pred CeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999876 679999999999999999999999999999999999998753
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.4e-47 Score=450.69 Aligned_cols=477 Identities=22% Similarity=0.270 Sum_probs=377.6
Q ss_pred CCcchhhhhHHHHhhcCHHHH---------HHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH--HcC
Q 003747 42 SDDKKSRVVYESLRVLEWDKL---------CHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ--KHG 110 (798)
Q Consensus 42 ~~~~~~~m~~~~l~~Le~~~i---------~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~--~~~ 110 (798)
.....|.|+..|++-||...= +=++-.+|.|++|.+.++.-+..|..+.+.++.+|+-+.++..-. ...
T Consensus 255 ~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~ 334 (843)
T COG0249 255 DLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREK 334 (843)
T ss_pred ccCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344455588888888874322 334558999999999887766555689999999999988877742 111
Q ss_pred CCCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hHHHHh---hcc---chHHH---
Q 003747 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI-KE-DADLYI---RFM---PLTQM--- 179 (798)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~-~~-~~~~~~---~l~---~~~~l--- 179 (798)
...-+..+.| +...+.|...| .-++.++..++..++.+..++..+.... .. ...... .+. .+..+
T Consensus 335 -L~~~L~~v~D--leRl~~Rl~~~-~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~~~l~~~~~~i~~~~~~~e~~~ll~~ 410 (843)
T COG0249 335 -LREMLKKVPD--LERLLSRLSLG-RASPRDLLRLRDSLEKIPEIFKLLSSLKSESDLLLLLEDIESLDYLAELLELLET 410 (843)
T ss_pred -HHHHHhcCcC--HHHHHHHHHcC-CCChhhHHHHHHHHHHHHHHHHHHhccccchhhhHHhhhhhccccHHHHHHHHHH
Confidence 1123566764 78888887766 7899999999999999998887765321 00 011111 111 11111
Q ss_pred --------------HH----HHHHHH----------Hhh----hcccccee--eeee-ECCEEEEEecCCcc-CCCc-EE
Q 003747 180 --------------LY----QLMDML----------IRN----ENNESLFL--EVSS-IHGRLCIRTGADQL-SFKG-LL 222 (798)
Q Consensus 180 --------------i~----~~l~~~----------~~~----~~~~~~~~--~vt~-r~gR~vipVk~~~~-~~~G-iv 222 (798)
|+ ..|+.+ +.. .+...... .|.. +-.=|+|-|+.... .+|. .+
T Consensus 411 ~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~i 490 (843)
T COG0249 411 AINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYI 490 (843)
T ss_pred HhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccceeEEEechhccccCchHHH
Confidence 10 111111 100 00000000 0111 11236788887776 7776 33
Q ss_pred E-ee-ecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003747 223 L-SS-SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 300 (798)
Q Consensus 223 ~-~~-sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~ 300 (798)
+ .. .+...|.+|. +.+++.++..++......+++++.++.+.+..|.+.|+.+...+++||++.++|..|...+||+
T Consensus 491 r~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~r 569 (843)
T COG0249 491 RRQTLKNAERFTTPE-LKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVR 569 (843)
T ss_pred HHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 3 33 4555666666 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCcc
Q 003747 301 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKD 380 (798)
Q Consensus 301 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (798)
|++++. . .+.+.++|||+++...
T Consensus 570 P~~~~~---------------------~-~l~i~~gRHPvvE~~~----------------------------------- 592 (843)
T COG0249 570 PEFVDS---------------------N-DLEIKEGRHPVVEAVL----------------------------------- 592 (843)
T ss_pred ceecCC---------------------C-CEEEEecCcchhhhhc-----------------------------------
Confidence 999841 2 2999999999996421
Q ss_pred CCCCCchhhhhhhcCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhc
Q 003747 381 TNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADI 460 (798)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~i 460 (798)
. ..+||||+.+++.+++++|||||+|||||+||++|++++|+|+|+|||| ..+.++++|+||+++
T Consensus 593 -------------~-~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA-~~A~i~ivD~IfTRi 657 (843)
T COG0249 593 -------------D-NGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPA-EKARIGIVDRIFTRI 657 (843)
T ss_pred -------------c-CCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeH-HHccccccceeeecc
Confidence 1 1289999999988899999999999999999999999999999999999 899999999999999
Q ss_pred CchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhh
Q 003747 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLK 539 (798)
Q Consensus 461 g~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a 539 (798)
|..|++..+.|||+-+|.+++.|+..+++.+|+||||.|.||+..+|.+++++++++|.+. ++. +|++|||+++..+.
T Consensus 658 Ga~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~-tLFATHy~ELt~l~ 736 (843)
T COG0249 658 GAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCR-TLFATHYHELTELE 736 (843)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCce-EEEeccHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999996 775 99999999999999
Q ss_pred ccccceeeeEEEEe--cccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 540 YSNDFFENACMEFD--EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 540 ~~~~~l~ng~v~fd--~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
.....+.|.+|... .+++.+.|++..|.+++|||+++|+..|+|.+|++||++++.+
T Consensus 737 ~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~ 795 (843)
T COG0249 737 EKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAE 795 (843)
T ss_pred hcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888999998754 3557889999999999999999999999999999999998753
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-41 Score=376.44 Aligned_cols=474 Identities=21% Similarity=0.250 Sum_probs=360.9
Q ss_pred hhhhhHHHHhhcCHHHH---------HHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 003747 46 KSRVVYESLRVLEWDKL---------CHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116 (798)
Q Consensus 46 ~~~m~~~~l~~Le~~~i---------~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~~~~~~~~~~ 116 (798)
.|.++..||+-||.-.= +=++-.++.|..|.++++.-+.-|.-|...+..+|+-++|.... ...+.-|
T Consensus 457 ~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitsh---ssnS~vf 533 (1070)
T KOG0218|consen 457 HMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSH---SSNSIVF 533 (1070)
T ss_pred eeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhc---ccchHHH
Confidence 35577888888875221 11355789999999998875544446889999999987776311 1111111
Q ss_pred CCCC-----chhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-HH---HHHH-----------------HHhhhh----
Q 003747 117 TGVD-----LSLVKSAIREVRRASPLRPNEALAVVALLQFSET-LQ---LSLR-----------------AAIKED---- 166 (798)
Q Consensus 117 ~~~~-----~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~-l~---~~~~-----------------~~~~~~---- 166 (798)
+.|. .+|+...+-|.--|.+-+++|+..+...+..+.. .+ -++. ..+.++
T Consensus 534 ~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~ 613 (1070)
T KOG0218|consen 534 ESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPL 613 (1070)
T ss_pred HHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCcc
Confidence 1110 0134555555555655555888777665544322 21 1110 001000
Q ss_pred ----------------------HHHHhhccchHH---------HHHHH----------HHHHHhhhccccceeeeeeECC
Q 003747 167 ----------------------ADLYIRFMPLTQ---------MLYQL----------MDMLIRNENNESLFLEVSSIHG 205 (798)
Q Consensus 167 ----------------------~~~~~~l~~~~~---------li~~~----------l~~~~~~~~~~~~~~~vt~r~g 205 (798)
.+++..+..++. .||+. |++ +|++-....++..++-+-
T Consensus 614 ~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLae-iRk~Lk~pnlef~~vsgv 692 (1070)
T KOG0218|consen 614 STSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAE-IRKYLKRPNLEFRQVSGV 692 (1070)
T ss_pred ccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCceeEEecCe
Confidence 001111111111 03332 222 233333345556777888
Q ss_pred EEEEEecCCcc-CC--CcEEEeeecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003747 206 RLCIRTGADQL-SF--KGLLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 282 (798)
Q Consensus 206 R~vipVk~~~~-~~--~Giv~~~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~ 282 (798)
-|||-|+...- ++ .||-.+++....-+.|+.++++-.+|..++.....+-+..++.+..++..|..++.++...+|.
T Consensus 693 ~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~Lat 772 (1070)
T KOG0218|consen 693 DFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLAT 772 (1070)
T ss_pred eEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999995444 44 4666788888877777779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHH
Q 003747 283 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 362 (798)
Q Consensus 283 LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~ 362 (798)
+||+++.|+.|...|||||+|+++ ...|.++++|||+++..
T Consensus 773 lDCi~SlA~~s~n~nYvRPtfvd~---------------------~~eI~ikngRhPvIe~L------------------ 813 (1070)
T KOG0218|consen 773 LDCILSLAATSCNVNYVRPTFVDG---------------------QQEIIIKNGRHPVIESL------------------ 813 (1070)
T ss_pred HHHHHHHHHHhccCCccCcccccc---------------------hhhhhhhcCCCchHHHH------------------
Confidence 999999999999999999999852 13589999999999631
Q ss_pred HHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc
Q 003747 363 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 441 (798)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~ 441 (798)
.+..+||||+.++ +++++.+|||||+||||.++|.++++.+|+|.|+|
T Consensus 814 -------------------------------l~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsf 862 (1070)
T KOG0218|consen 814 -------------------------------LVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSF 862 (1070)
T ss_pred -------------------------------hhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCc
Confidence 1245899999999 88899999999999999999999999999999999
Q ss_pred cccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 442 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 442 vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
+|+ +.+.+++||.+|.+||..|++..+.|||.-+|.....|+..++..+++||||.|.||...+|.+++.+.++++.+.
T Consensus 863 VPA-eea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~ 941 (1070)
T KOG0218|consen 863 VPA-EEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSEL 941 (1070)
T ss_pred cch-HHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHh
Confidence 999 8899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcEEEEEecchhHHhhhccc-cceeeeEEEE---------ecccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHH
Q 003747 522 GSLLTIATTHHGELKTLKYSN-DFFENACMEF---------DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 591 (798)
Q Consensus 522 g~t~VIitTHd~el~~~a~~~-~~l~ng~v~f---------d~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~ 591 (798)
-.+.+++|||++.+..+-... .-+.|.+|.| |.+.+.+.|+|..|++.+||++++|+..++|.+|++||-
T Consensus 942 ~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~ 1021 (1070)
T KOG0218|consen 942 SKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAF 1021 (1070)
T ss_pred hceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHH
Confidence 555699999999988755432 3456667755 334567789999999999999999999999999999998
Q ss_pred HHH
Q 003747 592 QLY 594 (798)
Q Consensus 592 ~~~ 594 (798)
.+.
T Consensus 1022 siS 1024 (1070)
T KOG0218|consen 1022 SIS 1024 (1070)
T ss_pred HHH
Confidence 765
No 8
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=7.1e-39 Score=335.22 Aligned_cols=200 Identities=40% Similarity=0.633 Sum_probs=169.1
Q ss_pred CCcceeeeEEECCCC-eEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhh
Q 003747 395 LAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 473 (798)
Q Consensus 395 ~~~~V~~disL~~~g-~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstf 473 (798)
++.+||||+.++.+. ++++|||||+|||||+||+||.+.+|+|+|+++|| ..+.+++|++++.+++..|++..+.|+|
T Consensus 28 ~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA-~~~~i~~~d~I~t~~~~~d~~~~~~S~F 106 (235)
T PF00488_consen 28 NKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA-ESAEIPIFDRIFTRIGDDDSIESGLSTF 106 (235)
T ss_dssp TSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS-SEEEEE--SEEEEEES---SSTTSSSHH
T ss_pred CCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee-cccccccccEEEeecccccccccccccH
Confidence 457899999999554 89999999999999999999999999999999999 7789999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 474 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 474 s~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
..+|+++..++..+++.+|+|+||+++||+|.+|.+++.+++++|.++ ++. +|++||+.++..+......+.+.+|.+
T Consensus 107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~ 185 (235)
T PF00488_consen 107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF-VIIATHFHELAELLERNPNVQNYHMEV 185 (235)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E-EEEEES-GGGGGHHHHSTTEEEEEEEE
T ss_pred HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc-EEEEeccchhHHHhhhCccccccceee
Confidence 999999999999999999999999999999999999999999999984 776 999999999988777667788888877
Q ss_pred ec--ccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 553 DE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 553 d~--~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
+. +.+.++|++..|.++.|||+.+|++.|+|++++++|++++..
T Consensus 186 ~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~ 231 (235)
T PF00488_consen 186 EEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQ 231 (235)
T ss_dssp EEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred eeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 54 678899999999999999999999999999999999998753
No 9
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.4e-37 Score=321.73 Aligned_cols=193 Identities=32% Similarity=0.474 Sum_probs=180.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
+.+|++|++++ ..+++++|+||||+||||++++++++.+|+|+|+++|+ ....+++++++|.+++..|++..+.|+|+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa-~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPA-KSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCc-cccEeccccEEEEecCcccccccCcchHH
Confidence 46899999998 66899999999999999999999999999999999999 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+++++..++..+++|+|+|||||++||||.++.+++.+++++|.+. +++ +|++||++++.........+.+++|.++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~-~i~~TH~~el~~~~~~~~~v~~~~m~~~ 173 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCL-TLFSTHYHSLCDEFHEHGGVRLGHMACA 173 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCc-EEEEeccHHHHHHhhcCcceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886 887 9999999999886666678899999874
Q ss_pred c--------ccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHH
Q 003747 554 E--------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590 (798)
Q Consensus 554 ~--------~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A 590 (798)
. +++.|+|++..|+++.|||+.+|++.|+|++++++|
T Consensus 174 ~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 174 VKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred EeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 3 578999999999999999999999999999999986
No 10
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.7e-37 Score=319.81 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=184.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
..+|++|++++ .++++++|+|||||||||+||+||.+.+++|+|+++|+ ....++.++.++..++..+++..++|+|+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa-~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPC-DSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCc-ccEEEeccceeEeeeccccchhcCcChHH
Confidence 46899999999 68899999999999999999999999999999999999 67889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.++.++..++..+++|+|+|||||++||++.++..+...+++.+.+ .|++ +|++||+.++..++++...+.+|+|.++
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~-vlisTH~~el~~~~~~~~~i~~g~~~~~ 173 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCF-CLFATHFHELTALADEVPNVKNLHVTAL 173 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCe-EEEEechHHHHHHhhcCCCeEEEEEEEE
Confidence 9999999999888999999999999999999999999888888875 4777 9999999999999999999999999876
Q ss_pred c----ccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHH
Q 003747 554 E----VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 595 (798)
Q Consensus 554 ~----~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~ 595 (798)
. +++.|+|+|..|+++.|||+.+|++.|+|++++++|+++..
T Consensus 174 ~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~ 219 (222)
T cd03285 174 TDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKAL 219 (222)
T ss_pred EeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 5 67899999999999999999999999999999999998764
No 11
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-36 Score=343.44 Aligned_cols=307 Identities=26% Similarity=0.394 Sum_probs=276.9
Q ss_pred CcEE-EeeecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 003747 219 KGLL-LSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL--S 295 (798)
Q Consensus 219 ~Giv-~~~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~--~ 295 (798)
++.. .|...+|+|+....+-.+||+..+.+.++++++..|.+++......|.+.|..+.+.+|+||++.++|..|. -
T Consensus 520 k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~ 599 (902)
T KOG0219|consen 520 KNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAP 599 (902)
T ss_pred CCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCC
Confidence 3444 466666999999999999999999999999999999999999999999999999999999999999999888 6
Q ss_pred cCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCcc
Q 003747 296 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 375 (798)
Q Consensus 296 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (798)
..|+||.+... +...+.++++|||+++.+
T Consensus 600 ~pYvRP~~l~~--------------------gs~rl~l~~~rHp~lE~Q------------------------------- 628 (902)
T KOG0219|consen 600 IPYVRPKLLPL--------------------GSKRLELKQSRHPVLEGQ------------------------------- 628 (902)
T ss_pred CCccCcccccc--------------------chhHHHHHhcccchhhcc-------------------------------
Confidence 68899988741 123689999999999642
Q ss_pred CCCccCCCCCchhhhhhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh
Q 003747 376 KGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 454 (798)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~ 454 (798)
+.-.++|||+.+. .++++++|+|||++||||++|+.|.+.+|+|+|+|+|+ +.+.+++.+
T Consensus 629 ------------------d~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPc-e~A~i~IvD 689 (902)
T KOG0219|consen 629 ------------------DEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPC-ESATISIVD 689 (902)
T ss_pred ------------------ccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceeh-hhcCCchhh
Confidence 1235899999999 77899999999999999999999999999999999999 889999999
Q ss_pred HHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecch
Q 003747 455 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHG 533 (798)
Q Consensus 455 ~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~ 533 (798)
.|+.+.|..++..++.|||+.+|...+.|++.+++.+||++|||++||...+|-.+++++-+++..+ |+- .|++||++
T Consensus 690 ~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf-~lfATHfh 768 (902)
T KOG0219|consen 690 GILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCF-CLFATHFH 768 (902)
T ss_pred HHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHh-HHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 554 89999999
Q ss_pred hHHhhhccccceeeeEEEEe--cccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 534 ELKTLKYSNDFFENACMEFD--EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 534 el~~~a~~~~~l~ng~v~fd--~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
++..++.....+.|-+|... .+.+.-.|++..|+++.|+++.+|+..|+|+.+++.|+....+
T Consensus 769 Elt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~e 833 (902)
T KOG0219|consen 769 ELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEE 833 (902)
T ss_pred HHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHH
Confidence 99999988888888777543 3556677999999999999999999999999999999987643
No 12
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6e-37 Score=317.94 Aligned_cols=193 Identities=33% Similarity=0.504 Sum_probs=178.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
..+|++|+++. ..+++++|+||||+||||+||+++++.+++++|+++|+ ....++++++++.+++..|++..++|+|+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-CceEEeccceEEEEecCccccccccchHH
Confidence 36899999999 77899999999999999999999999999999999999 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcc-ccceeeeEEEE
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYS-NDFFENACMEF 552 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~-~~~l~ng~v~f 552 (798)
.+++++..++..+++++|+|||||++|||+.++.+++.++++.+.+. +++ +|++||+.++..+... ...+.|.+|.|
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~-~i~~TH~~~l~~~~~~~~~~v~~~~~~~ 174 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCL-VLFVTHYPSLGEILRRFEGSIRNYHMSY 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCe-EEEEcccHHHHHHHHhcccCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999987 776 9999999999887754 24577888876
Q ss_pred ec----------ccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHH
Q 003747 553 DE----------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 590 (798)
Q Consensus 553 d~----------~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A 590 (798)
+. +++.|+|+|..|.++.|||+.+|++.|+|+++++||
T Consensus 175 ~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 175 LESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred EEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 53 468999999999999999999999999999999986
No 13
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=4e-36 Score=310.84 Aligned_cols=197 Identities=31% Similarity=0.459 Sum_probs=183.7
Q ss_pred CcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 396 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 396 ~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
..+|+||++++.+.++++|+|||||||||+||+++++.+++++|+++|+ ....++++++++.+++..+++..+.|+|..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~-~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~ 95 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPA-SKAEIGVVDRIFTRIGASDDLAGGRSTFMV 95 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecc-ccceecceeeEeccCCchhhhccCcchHHH
Confidence 4689999999955599999999999999999999999999999999998 668899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEe-
Q 003747 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD- 553 (798)
Q Consensus 476 ~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd- 553 (798)
++.++..++..+++|+++|||||++||++.++..+...+++.+.+. +++ +|++||+.++..++++...+.+++|.++
T Consensus 96 e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~-vi~~TH~~~l~~l~~~~~~v~~~~~~~~~ 174 (216)
T cd03284 96 EMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAK-TLFATHYHELTELEGKLPRVKNFHVAVKE 174 (216)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCc-EEEEeCcHHHHHHhhcCCCeEEEEEEEEe
Confidence 9999999999999999999999999999999999888899999887 887 8999999999999999889999999884
Q ss_pred -cccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHH
Q 003747 554 -EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 594 (798)
Q Consensus 554 -~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~ 594 (798)
.+++.|+|++..|.++.|||+.+|++.|+|++++++|++++
T Consensus 175 ~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 175 KGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred eCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 47789999999999999999999999999999999999863
No 14
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.5e-35 Score=339.68 Aligned_cols=475 Identities=19% Similarity=0.210 Sum_probs=356.6
Q ss_pred hhHHHHhhcCHH---------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HH-cCCCCCCC
Q 003747 49 VVYESLRVLEWD---------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QK-HGSCSLDL 116 (798)
Q Consensus 49 m~~~~l~~Le~~---------~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~--~~-~~~~~~~~ 116 (798)
++-.+|+-||.- .=+=.+-.+|+|+.||+.+..-+--+.-+.+.++.+++-+.-.... .. +-+ -.+
T Consensus 540 lD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~--e~l 617 (1125)
T KOG0217|consen 540 LDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVG--ETL 617 (1125)
T ss_pred ecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence 555566655532 1223344899999999988754333346777888887654433330 00 000 013
Q ss_pred CCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHhhccchHHH--------
Q 003747 117 TGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED---------ADLYIRFMPLTQM-------- 179 (798)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~~~~---------~~~~~~l~~~~~l-------- 179 (798)
.-+. |++..|.|...++.-..+.+.+..+.|+..+.+-.-+...+... ......++.+..-
T Consensus 618 ~klP--DlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af 695 (1125)
T KOG0217|consen 618 KKLP--DLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAF 695 (1125)
T ss_pred hhCC--cHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 4454 58888888888877778888888888887766544332211000 0011111001100
Q ss_pred ------------------------------HHHHHHHHHhhhcccc---ceeeeeeECCEEEEEecCCcc-CCC--cEEE
Q 003747 180 ------------------------------LYQLMDMLIRNENNES---LFLEVSSIHGRLCIRTGADQL-SFK--GLLL 223 (798)
Q Consensus 180 ------------------------------i~~~l~~~~~~~~~~~---~~~~vt~r~gR~vipVk~~~~-~~~--Giv~ 223 (798)
+.+.|..++..++.+. ....+++--++|-+-|+.+.. +++ .++.
T Consensus 696 ~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~ 775 (1125)
T KOG0217|consen 696 DRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELM 775 (1125)
T ss_pred HHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCceeEeecCceEEEEecCcccCCCCchHHHHH
Confidence 1122233333322211 233577778899999999888 777 5555
Q ss_pred ee-ecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CC
Q 003747 224 SS-SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG--TS 300 (798)
Q Consensus 224 ~~-sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~--~~ 300 (798)
|+ -|...|+.|. +-.+=..+.+++........+..+++...+.++...+++++..++.||++++.|.+|..+++ |+
T Consensus 776 S~~Kg~~RY~tp~-~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Cr 854 (1125)
T KOG0217|consen 776 SAKKGVSRYYTPD-LRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCR 854 (1125)
T ss_pred HhhcCcccccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Confidence 55 6777899998 56677777777777777778999999999999999999999999999999999999998875 99
Q ss_pred CcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCcc
Q 003747 301 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKD 380 (798)
Q Consensus 301 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (798)
|.++++.+ ..+.+.+...|||++...
T Consensus 855 p~i~~~~d------------------t~~~l~~~~~~Hpcfsl~------------------------------------ 880 (1125)
T KOG0217|consen 855 PEIVESTD------------------TPGFLIVKGLRHPCFSLP------------------------------------ 880 (1125)
T ss_pred ceeecccC------------------CCceeEEecccCceeecC------------------------------------
Confidence 99885321 123689999999998421
Q ss_pred CCCCCchhhhhhhcCCcceeeeEEEC--CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhh
Q 003747 381 TNLSPSEMQVSALELAHPVPIDIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 458 (798)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~V~~disL~--~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~ 458 (798)
+.++.++||++.++ ....+..+||||++|||||||+++..++|+|.|++||+ ....++.++.||+
T Consensus 881 ------------s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa-~~~~~tpidrI~t 947 (1125)
T KOG0217|consen 881 ------------STGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPA-EVMELTPIDRIFT 947 (1125)
T ss_pred ------------cCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccH-HHhcccchHHHhh
Confidence 01246899999998 34455559999999999999999999999999999999 7888999999999
Q ss_pred hcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHh
Q 003747 459 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT 537 (798)
Q Consensus 459 ~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~ 537 (798)
++|..+.+..+-|||.-++.....|+..++..+||++||.++||..-+|.+|+.+++++|... ++ ..+++|||+.+..
T Consensus 948 RlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c-~~fFSTHYhsl~~ 1026 (1125)
T KOG0217|consen 948 RLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQC-LGFFSTHYHSLCV 1026 (1125)
T ss_pred hcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccc-cCCccccccchhH
Confidence 999999999999999999999999999999999999999999999999999999999999985 55 4899999999987
Q ss_pred hhccccceeeeEEE--Eeccc-ceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 538 LKYSNDFFENACME--FDEVK-LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 538 ~a~~~~~l~ng~v~--fd~~~-l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
...+.+.+..++|. .|.+. ..+.|++..|++|.||++++|+..|+|..|+++|.....+
T Consensus 1027 ~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E 1088 (1125)
T KOG0217|consen 1027 DFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHE 1088 (1125)
T ss_pred hhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHH
Confidence 66666667777774 45555 8899999999999999999999999999999999876543
No 15
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1.1e-35 Score=303.55 Aligned_cols=186 Identities=58% Similarity=0.920 Sum_probs=173.2
Q ss_pred CcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 396 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 396 ~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
..+|++++++..+.++++|+||||||||||||+|+...+++|.|+++|+.....++++++++..++..+++...+++||+
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~ 94 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSS 94 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHH
Confidence 46899999998766899999999999999999999888999999999985567888999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecc
Q 003747 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 476 ~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
+|+++..++..+.+|+++|+|||++|||+..+..+...+++.+.+.|.+ +|++||+.++..++++...+.+|++.+|.+
T Consensus 95 g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~-vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~ 173 (200)
T cd03280 95 HMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGAL-VIATTHYGELKAYAYKREGVENASMEFDPE 173 (200)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHhcCCCeEEEEEEEecC
Confidence 9999999998899999999999999999999998877788888877887 999999998889999999999999999999
Q ss_pred cceeeEEeecCCCCCchHHHHHHHcCC
Q 003747 556 KLKPTYKILWGVPGRSSAINIAERLGL 582 (798)
Q Consensus 556 ~l~ptY~L~~G~~g~S~a~~iA~~~gl 582 (798)
++.|+|++..|++++|||+.+|+++|+
T Consensus 174 ~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 174 TLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999999985
No 16
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-34 Score=326.82 Aligned_cols=295 Identities=23% Similarity=0.372 Sum_probs=267.6
Q ss_pred EEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCcccc
Q 003747 230 SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDM 309 (798)
Q Consensus 230 ~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~ 309 (798)
+-+....++.+|.++.+.-.++.-.-+.++..|.+.+..+.+.+..+.+++..||++++.|.++...++++|.++.
T Consensus 515 ~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~---- 590 (867)
T KOG0220|consen 515 YSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD---- 590 (867)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC----
Confidence 3356667889999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhh
Q 003747 310 KRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQ 389 (798)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (798)
.+.|.++|||+|++-+
T Consensus 591 --------------------slaI~qGRHPILe~i~-------------------------------------------- 606 (867)
T KOG0220|consen 591 --------------------SLAIKQGRHPILEKIS-------------------------------------------- 606 (867)
T ss_pred --------------------ceeeccCCCchhhhhc--------------------------------------------
Confidence 3899999999997521
Q ss_pred hhhhcCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhh
Q 003747 390 VSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 469 (798)
Q Consensus 390 ~~~~~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~ 469 (798)
.++++.++..++++.++.+|+|||+|||||+||.++++.+|+|+|+++|+ ..+.+++|++||.+||-.|+++.+
T Consensus 607 -----~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA-~YaS~pIf~RIFtRmg~nDele~N 680 (867)
T KOG0220|consen 607 -----AEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPA-EYASFRVFKRIFTRMGTNDELERN 680 (867)
T ss_pred -----ccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcch-hhccchHHHHHHHHhcCchhhhhc
Confidence 34688999999988899999999999999999999999999999999999 889999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeE
Q 003747 470 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 549 (798)
Q Consensus 470 lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~ 549 (798)
-|+|+.+|+..+.|+..+++.+||+|||.+.||...+|.++.+++.+++..-..+ ++++||..+++.++.....+.|.+
T Consensus 681 sS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~Lkay-TflATHFldIa~lan~~paVdnlH 759 (867)
T KOG0220|consen 681 SSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAY-TFLATHFLDIAAIANYYPAVDNLH 759 (867)
T ss_pred hhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHh-HHHHHHHHHHHHHhhcCcccccee
Confidence 9999999999999999999999999999999999999999999999999988887 899999999999999999999999
Q ss_pred EEEecc--ccee-eEEeecCCC-CCchHHHHHHHcCCChHHHHHHHHHHHHhhH
Q 003747 550 MEFDEV--KLKP-TYKILWGVP-GRSSAINIAERLGLPGIVVQNARQLYGAASA 599 (798)
Q Consensus 550 v~fd~~--~l~p-tY~L~~G~~-g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~ 599 (798)
+..+.. .... .|+|..|.. |.-|++.+++..-+|.+++..|+.+...-.+
T Consensus 760 F~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A 813 (867)
T KOG0220|consen 760 FLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITA 813 (867)
T ss_pred eeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHH
Confidence 876542 2221 488888864 7778999999999999999999987754433
No 17
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-33 Score=310.58 Aligned_cols=317 Identities=26% Similarity=0.307 Sum_probs=274.5
Q ss_pred EEEEecCCcc-CCCcEEE------eeecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 003747 207 LCIRTGADQL-SFKGLLL------SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNG 279 (798)
Q Consensus 207 ~vipVk~~~~-~~~Giv~------~~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~ 279 (798)
|++.|+..+. ...|+.. -.|-..+|+....+.+|++.+++..-++..-+..|+-.|..++......|.+....
T Consensus 460 fllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~l 539 (849)
T KOG0221|consen 460 FLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDL 539 (849)
T ss_pred eEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 3334422 24666689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHh
Q 003747 280 IIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 359 (798)
Q Consensus 280 l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~ 359 (798)
..+||++.+.|..|.++||.+|.++.+ .-.+.+.++|||+.+.-
T Consensus 540 aSrldvLls~a~~aa~~gy~~P~lv~e---------------------~~il~I~ngrh~l~e~~--------------- 583 (849)
T KOG0221|consen 540 ASRLDVLLSLASAAADYGYSRPRLVPE---------------------VLILRIQNGRHPLMELC--------------- 583 (849)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccccH---------------------HHHHHHHcCChhHHHHH---------------
Confidence 999999999999999999999999841 12368999999998531
Q ss_pred HHHHHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc
Q 003747 360 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 438 (798)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~ 438 (798)
.+.+|||+.+++ ++|++.+|||||.||||.+||.+|+++++++.
T Consensus 584 -----------------------------------~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahI 628 (849)
T KOG0221|consen 584 -----------------------------------ADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHI 628 (849)
T ss_pred -----------------------------------HHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhh
Confidence 136899999999 89999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Q 003747 439 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518 (798)
Q Consensus 439 G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L 518 (798)
|+|+|+ +.+++++.|.|+++|+..+++..+.|+|+-...+++.+++.++..+|+|+||.|.|||..+|.++..+++.++
T Consensus 629 GsFVPA-e~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w 707 (849)
T KOG0221|consen 629 GSFVPA-EEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHW 707 (849)
T ss_pred ccccch-hhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHH
Confidence 999999 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC--cEEEEEecchhHHhhhccccc--eeeeEE---EEecccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHH
Q 003747 519 AESGS--LLTIATTHHGELKTLKYSNDF--FENACM---EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 591 (798)
Q Consensus 519 ~~~g~--t~VIitTHd~el~~~a~~~~~--l~ng~v---~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~ 591 (798)
..+|. ..|+++||.+++..+..-... +....| ..+++.+.+.|+...|....|+|+.+|+..|+|++++.||.
T Consensus 708 ~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~ 787 (849)
T KOG0221|consen 708 LARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAK 787 (849)
T ss_pred HhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHH
Confidence 88764 369999999999864321111 111111 13667889999999999999999999999999999999999
Q ss_pred HHHH
Q 003747 592 QLYG 595 (798)
Q Consensus 592 ~~~~ 595 (798)
++..
T Consensus 788 ~v~~ 791 (849)
T KOG0221|consen 788 EVSD 791 (849)
T ss_pred HHHH
Confidence 8764
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.1e-34 Score=299.59 Aligned_cols=186 Identities=30% Similarity=0.437 Sum_probs=167.8
Q ss_pred CcceeeeEEECCCC-eEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 396 AHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 396 ~~~V~~disL~~~g-~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
+.+||||+.++.+. ++++|+||||+|||||||+++...++++.|+++|+ ....++++++++.+++..+++..++|+|+
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a-~~~~~~~~d~i~~~l~~~~si~~~~S~f~ 93 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA-DSATIGLVDKIFTRMSSRESVSSGQSAFM 93 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc-CCcEEeeeeeeeeeeCCccChhhccchHH
Confidence 36899999999654 89999999999999999999988888999999998 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--CcEEEEEecchhHHhhhc--cccceeeeEE
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG--SLLTIATTHHGELKTLKY--SNDFFENACM 550 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g--~t~VIitTHd~el~~~a~--~~~~l~ng~v 550 (798)
.+++++..++..+.+|+|+|||||++||||.++..++.++++.+.+.| +..+|++||+.++..... ....+.+++|
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~ 173 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTM 173 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEE
Confidence 999999999999999999999999999999999999888999987653 323899999999987654 4567888999
Q ss_pred EE--e------cccceeeEEeecCCCCCchHHHHHHHcCC
Q 003747 551 EF--D------EVKLKPTYKILWGVPGRSSAINIAERLGL 582 (798)
Q Consensus 551 ~f--d------~~~l~ptY~L~~G~~g~S~a~~iA~~~gl 582 (798)
.+ + .+++.|+|+|..|+++.|||+++|++.|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 174 EVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 87 4 26799999999999999999999999885
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.6e-34 Score=293.86 Aligned_cols=184 Identities=27% Similarity=0.514 Sum_probs=171.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
+.++++|++++ ..+++++|+||||+||||+||+++++.+++++|+++|+ ....++++++++..++..+++....|+|+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa-~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPA-EYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcch-hhcCccChhheeEecCCccccchhhhHHH
Confidence 46899999999 77799999999999999999999999999999999998 77889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.+++++..++..+++|+|+|||||++||||.++..+..++++.+.+.|.+ +|++||+.++..+......+.+.++.++.
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~~~ 172 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKEST-VFFATHFRDIAAILGNKSCVVHLHMKAQS 172 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhhcCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999988887 99999999999887776778888887764
Q ss_pred ---ccceeeEEeecCCCC-CchHHHHHHHcC
Q 003747 555 ---VKLKPTYKILWGVPG-RSSAINIAERLG 581 (798)
Q Consensus 555 ---~~l~ptY~L~~G~~g-~S~a~~iA~~~g 581 (798)
+.+.|+|++..|.+. .|||+++|+.+.
T Consensus 173 ~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 173 INSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred cCCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 678899999999999 999999999864
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=3.1e-33 Score=282.33 Aligned_cols=181 Identities=43% Similarity=0.651 Sum_probs=169.3
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCC
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 490 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~p 490 (798)
+++|||||||||||+||+++...+++|+|+++|+ ....++++++++..++..+++..++|+|+++++++..++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-ESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-hheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEecc--cceeeEEeecCC
Q 003747 491 SLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGV 567 (798)
Q Consensus 491 sLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~--~l~ptY~L~~G~ 567 (798)
+++|+|||++||||.++..+...+++.+.+. +++ +|++||+.++..+++....+.+++|.++.+ .+.|+|++..|.
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~-iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~ 158 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGAL-TLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGV 158 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECC
Confidence 9999999999999999999988899988874 777 899999999999998888899999987654 488999999999
Q ss_pred CCCchHHHHHHHcCCChHHHHHHHHH
Q 003747 568 PGRSSAINIAERLGLPGIVVQNARQL 593 (798)
Q Consensus 568 ~g~S~a~~iA~~~gl~~~ii~~A~~~ 593 (798)
++.|||+.+|++.|+|++++++|+++
T Consensus 159 ~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 159 AGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999875
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=4.6e-33 Score=284.43 Aligned_cols=184 Identities=41% Similarity=0.573 Sum_probs=170.9
Q ss_pred CcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 396 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 396 ~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
..+|++|++++. +++++|+||||||||||||+|++..++++.|.++|+ ....++++++++..++..+++...+|+|+.
T Consensus 17 ~~~~~~~~~l~~-~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~ 94 (202)
T cd03243 17 ETFVPNDINLGS-GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-ESASIPLVDRIFTRIGAEDSISDGRSTFMA 94 (202)
T ss_pred CceEeeeEEEcC-CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-cccccCCcCEEEEEecCcccccCCceeHHH
Confidence 468999999985 488999999999999999999988899999999998 778899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecc
Q 003747 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 476 ~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
+++++..++..+.+|+++|||||++||||.++..+...+++.+.+.+.+ +|++||+.++...++....+.+++|.++.+
T Consensus 95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~-vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~ 173 (202)
T cd03243 95 ELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR-TLFATHFHELADLPEQVPGVKNLHMEELIT 173 (202)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEECChHHHHHHhhcCCCeEEEEEEEEec
Confidence 9999999999999999999999999999998988877788888888887 999999999999999889999999998775
Q ss_pred --cceeeEEeecCCCCCchHHHHHHHcCC
Q 003747 556 --KLKPTYKILWGVPGRSSAINIAERLGL 582 (798)
Q Consensus 556 --~l~ptY~L~~G~~g~S~a~~iA~~~gl 582 (798)
++.++|++..|.+++|||+.+|+++|+
T Consensus 174 ~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 174 TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 689999999999999999999999985
No 22
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=2.1e-31 Score=272.32 Aligned_cols=183 Identities=28% Similarity=0.441 Sum_probs=161.4
Q ss_pred CcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 396 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 396 ~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
+++|++|++++.+ ++++|+||||||||||||+|++..++++.|.++|+ ....+. ++.+|..++..+++..+++.|..
T Consensus 13 ~~~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a-~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 13 EKRVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA-SSFELP-PVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CCeecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec-CccCcc-cceEEEeccchhccccccChHHH
Confidence 3689999999965 99999999999999999999999999999999998 556666 67788999999999999999988
Q ss_pred HHHHHHHHHHhCC--CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEE--E
Q 003747 476 HLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM--E 551 (798)
Q Consensus 476 ~~~ri~~il~~a~--~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v--~ 551 (798)
++.++..++..+. +|+++|||||++|||+.++..+...+++.+.+.|.+ +|++||+.++....+....+.+.++ .
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t-iiivTH~~~~~~~~~~~~~v~~~~~~~~ 168 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI-GIISTHDLELADLLDLDSAVRNYHFRED 168 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEcCcHHHHHhhhcCCCeEEEEEEEE
Confidence 9999999999888 999999999999999988888877788888877887 9999999999887766667777655 4
Q ss_pred EecccceeeEEeecCCCCCchHHHHHHHcCC
Q 003747 552 FDEVKLKPTYKILWGVPGRSSAINIAERLGL 582 (798)
Q Consensus 552 fd~~~l~ptY~L~~G~~g~S~a~~iA~~~gl 582 (798)
++...+.|+|++.+|+++.|+|+.+|++.|+
T Consensus 169 ~~~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 169 IDDNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred EECCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 4567789999999999999999999999885
No 23
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.92 E-value=1.4e-24 Score=234.01 Aligned_cols=250 Identities=16% Similarity=0.127 Sum_probs=194.4
Q ss_pred HHHHHHHhhcCCHHHHHHHhc--cCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCCCchhHHHHHHHhhhCCC
Q 003747 61 KLCHSVSSFARTSLGREATLT--QLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLTGVDLSLVKSAIREVRRASP 136 (798)
Q Consensus 61 ~i~~~l~~~~~s~~g~~~~~~--l~~~~~~~~~~~~~~l~et~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (798)
.++..|. +|.|++|++.++. +.| .++..+++++++.+.++.. .+.... ...+.++. |+...+.++..| .
T Consensus 3 sL~~~l~-~~~T~~G~r~L~~wl~~P--l~~~~~I~~R~~~v~~~~~~~~l~~~l-~~~L~~~~--Di~~~l~~~~~~-~ 75 (308)
T smart00533 3 SLFELLN-HTKTPMGKRLLRRWLLQP--LLDLKEINERLDAVEELVENPELRQKL-RQLLKRIP--DLERLLSRIERG-R 75 (308)
T ss_pred CHHHHHc-cCCCcHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhChHHHHHH-HHHHccCC--cHHHHHHHHHcC-C
Confidence 3455664 7999999999998 544 5799999999999999987 332221 23577776 488899998877 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh----h-HH----HHhhccchH------------------------------
Q 003747 137 LRPNEALAVVALLQFSETLQLSLRAAIKE----D-AD----LYIRFMPLT------------------------------ 177 (798)
Q Consensus 137 L~~~el~~i~~~l~~~~~l~~~~~~~~~~----~-~~----~~~~l~~~~------------------------------ 177 (798)
+++.|+..+..++..+..+++++...-.. . .. ....+..+.
T Consensus 76 ~~~~el~~l~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~ 155 (308)
T smart00533 76 ASPRDLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELRE 155 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHH
Confidence 89999999999999999998887432000 0 00 000011010
Q ss_pred ------HHHHHHHHHHHhhhcccccee--eeeeECCEEEEEecCCcc-CCCcEEE--eeecCeEEEecccccccHHHHHH
Q 003747 178 ------QMLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLNDELQQ 246 (798)
Q Consensus 178 ------~li~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~~-~~~Giv~--~~sg~t~~ieP~~~v~lnn~l~~ 246 (798)
+.|.+.++.+.++.. ...++ .++.++ |||||+.+++ ++||++| |+||+++|++|..++++||++.+
T Consensus 156 ~~~~l~~~l~~~~~~~~~~~~-~~~l~~~~~~~~g--~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~~~ 232 (308)
T smart00533 156 KLEELEEELEELLKKEREELG-IDSLKLGYNKVHG--YYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENELLE 232 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCceEEeEeccEE--EEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHHHH
Confidence 013333344433322 12344 356554 9999999999 9999998 67999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCccccccccCCCCccccccCCc
Q 003747 247 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSE 326 (798)
Q Consensus 247 l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (798)
+..++.+++.+|+++|+..+.++.+.|..+.+++++||+++|+|.+|.+++||+|.|++
T Consensus 233 ~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~--------------------- 291 (308)
T smart00533 233 AKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVD--------------------- 291 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999984
Q ss_pred ccceEEecCCccchhh
Q 003747 327 REWTIYLPKAYHPLLL 342 (798)
Q Consensus 327 ~~~~i~l~~arHPlL~ 342 (798)
+..+.++++|||+++
T Consensus 292 -~~~l~i~~~rHPlle 306 (308)
T smart00533 292 -SGELEIKNGRHPVLE 306 (308)
T ss_pred -CCCEEEeeCCCCccc
Confidence 135999999999985
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=3.3e-22 Score=210.41 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=118.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--------------------cccccccccccccc--c-
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--------------------AKSGLHILSSEYAK--V- 450 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--------------------aq~G~~vpa~~~~~--i- 450 (798)
+++++..+++|+ +.|++++|+||||||||||||+|+++..+ ++.-.++|...... +
T Consensus 13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 357899999999 88999999999999999999999754321 11112334311110 0
Q ss_pred -------------ch-----------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 451 -------------PW-----------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 451 -------------~~-----------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
++ .++.+..+|..+...+.+.++||+. +++..+.+++++|++|||||||+.||+.
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~ 172 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH
Confidence 11 1223556677777777778888655 4555566779999999999999999998
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 506 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 506 eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
....+.. ++..+. ++|.| ||+|+||.+++ .||++...+.+|.+...+.
T Consensus 173 ~Q~evl~-ll~~l~~~~~~t-vv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 173 HQIEVLE-LLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 8888765 666777 56888 99999999988 5999999999999987653
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=7.9e-22 Score=206.77 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=112.8
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----------------cccccccccc--cccc------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEY--AKVP------ 451 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----------------~G~~vpa~~~--~~i~------ 451 (798)
.|+.|++|+ ..|++++|+||||||||||+|+|.++..+.+ .-.|+|.... ..+|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 699999999 8899999999999999999999966432211 0124453110 0111
Q ss_pred ----------h-----------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 ----------W-----------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ----------~-----------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+ ++..+..+|..+.....++.+||++ +|+..+.+++++|+||||||||+|+|+.....
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 1 1234556677777777888888654 56666678899999999999999999955555
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+ ..++..|++.|+| |+++|||.+.. .++|++..+ |.++.+.+
T Consensus 178 i-~~lL~~l~~eg~t-Il~vtHDL~~v~~~~D~vi~L-n~~~~~~G 220 (254)
T COG1121 178 I-YDLLKELRQEGKT-VLMVTHDLGLVMAYFDRVICL-NRHLIASG 220 (254)
T ss_pred H-HHHHHHHHHCCCE-EEEEeCCcHHhHhhCCEEEEE-cCeeEecc
Confidence 5 6689999988998 99999998776 588877654 66665543
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=198.69 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-cccc--------------------cc---cc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSS--------------------EY---AK 449 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-vpa~--------------------~~---~~ 449 (798)
|+..|+.+++++ ..|++++|+||+|||||||||||.++..... |.. +-.. .. ..
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~-G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS-GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC-ceEEECCEeccchhhHHHHHHhcCeeccccccccc
Confidence 345799999999 8999999999999999999999976543322 111 1000 00 00
Q ss_pred cchh----------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 450 VPWF----------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 450 i~~~----------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
..+. ..++..+|..+......+.+||++ +|++.+.+++.+|+++|+|||||+|||+-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 0111 124566777777778888888765 56666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
..... .++..|++.|.| .|+|||++.++. .+|+++.+.+|.+..++
T Consensus 172 v~EVL-~vm~~LA~eGmT-MivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 172 VGEVL-DVMKDLAEEGMT-MIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHH-HHHHHHHHcCCe-EEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 77765 588889999998 899999999995 89999999999776654
No 27
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.2e-21 Score=226.98 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=151.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------ccccccccccccc----chh-------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------SGLHILSSEYAKV----PWF------- 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------~G~~vpa~~~~~i----~~~------- 453 (798)
++.++.+++|. ..|++++|+||||||||||||+|++...+.. .| |+|......+ .++
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhC
Confidence 35688999999 8899999999999999999999976532211 11 2222100000 011
Q ss_pred --------hHHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 454 --------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 454 --------~~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
..++..++.. +.....++++|++++ ++..+..++.+|+||||||||+|||+.....+.. ++..+ ++
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~---~g 478 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE-ALIDF---EG 478 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHc---CC
Confidence 1233445553 345566778887665 5566667789999999999999999976666654 33333 45
Q ss_pred cEEEEEecchhHH-hhhccccceeeeEEE-EecccceeeEE--eecCCC-CCchH-HH-HHHHcCC-ChHHHHHH-----
Q 003747 524 LLTIATTHHGELK-TLKYSNDFFENACME-FDEVKLKPTYK--ILWGVP-GRSSA-IN-IAERLGL-PGIVVQNA----- 590 (798)
Q Consensus 524 t~VIitTHd~el~-~~a~~~~~l~ng~v~-fd~~~l~ptY~--L~~G~~-g~S~a-~~-iA~~~gl-~~~ii~~A----- 590 (798)
| ||+||||.++. .+|+++..+.+|.+. +++.. . .|. ...... ....+ .. -...... +..--.+.
T Consensus 479 t-vi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (638)
T PRK10636 479 A-LVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL-E-DYQQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAELR 555 (638)
T ss_pred e-EEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH-H-HHHHHHhhhhhhhhhhccccccccccccccchhhhhHHHHHh
Confidence 7 89999998887 589999999999986 44321 1 121 000000 00000 00 0000000 00000000
Q ss_pred --HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 591 --RQLYGAASAEINEVIIEMERFKTQFLEHVHEAR-------HFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 656 (798)
Q Consensus 591 --~~~~~~~~~~le~~I~~Le~~~~~~e~~~~~~~-------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 656 (798)
.....++...+|+.|++||.++.++++++.... ..+.++.+.+++++.++++++++|+++..++++
T Consensus 556 ~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 556 TQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122334678888888888888888775542 145566667777888888888888877755543
No 28
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.8e-21 Score=208.92 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=115.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccc--ccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKV-- 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~--~~i-- 450 (798)
++.++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|.... ..+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 46899999999 8899999999999999999999976543221 11 2221000 000
Q ss_pred -------------------chhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 451 -------------------PWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 451 -------------------~~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
..++.++..++..+......++||++|+ ++..+.+++.+|+|+||||||+||||.....+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 0122345556666544455788998776 55666678999999999999999999666665
Q ss_pred HHHHHHHHHhcC-CcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESG-SLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g-~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+++.+.+.| .| ||++||+++.. .+|+++..+.+|.+.+++
T Consensus 176 -~~~l~~l~~~g~~t-vlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 176 -WELLRELAKEGGVT-ILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred -HHHHHHHHhCCCcE-EEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 56888888877 67 99999997766 579999999999999876
No 29
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=6.6e-21 Score=195.75 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=115.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----------------cccccccccc--cccchhh
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEY--AKVPWFD 454 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----------------~G~~vpa~~~--~~i~~~~ 454 (798)
+++.+.+|++|. +.|++++++||||+||||++|+|.++.-..+ +| |.|...+ ..+.+.|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChhhhccCccCcHHH
Confidence 456799999999 9999999999999999999999955432211 22 3342111 1112222
Q ss_pred H---------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 455 S---------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 455 ~---------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
+ ++.++++.......+.++|.+++ .+..+...+++|.|||||||||||||.....+-.
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence 2 23344444444455566776654 5666677899999999999999999988777755
Q ss_pred HHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 513 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 513 all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
.+..+++.|+| ||++||.++.+ .+||+...+..|+.++++.
T Consensus 172 -~I~~lk~~Gat-IifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 172 -AIFELKEEGAT-IIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred -HHHHHHhcCCE-EEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 55568999998 99999998877 5999999999999988763
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=9.8e-21 Score=194.67 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=113.0
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------------------cccccc-ccccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHIL-SSEYA 448 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------------------~G~~vp-a~~~~ 448 (798)
+++.|..+++|+ ..|++++|+||+|+|||||||+|+++..+.. +|..+. +.-..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 568899999999 9999999999999999999999965432221 111111 00111
Q ss_pred ccchhhHH----------------------hhhcCchhh-HhhhhhhhhHHHHH-HHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 449 KVPWFDSV----------------------FADIGDEQS-LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 449 ~i~~~~~i----------------------~~~ig~~~s-i~~~lstfs~~~~r-i~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.+.+++++ +...|.... .+...+.+||+|++ .+.+.+.+.+|+||++||||+||||
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 22222221 122344444 45556788899865 4555567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+ ..++..|++. |.| ++++|||.+-. ..||++..+.+|++.+.+
T Consensus 179 I~a~~~-~~LI~~L~~~lg~T-~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 179 ISAGVI-DELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred chHHHH-HHHHHHHHHhhCCE-EEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 666666 4566667655 777 99999996554 699999999999999976
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.2e-20 Score=195.09 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=110.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-ccc------------------------------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILS------------------------------ 444 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-vpa------------------------------ 444 (798)
..++.+++|+ +.|++++|+||+||||||||++||++..+. .|.+ +..
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 3689999999 899999999999999999999998764432 1221 110
Q ss_pred ----ccccccc-------------hhhHHhhhcCchhhHh-hhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 445 ----SEYAKVP-------------WFDSVFADIGDEQSLS-QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 445 ----~~~~~i~-------------~~~~i~~~ig~~~si~-~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.++..++ ....++..+|..+... ...+.+||+ .+|++.+.+++.+|++||.||||.+||+.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 0000000 0112233445555544 456677765 45677777889999999999999999998
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEecchhHHhhhccccceeeeEE
Q 003747 506 EGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACM 550 (798)
Q Consensus 506 eg~al~~all~~L~-~~g~t~VIitTHd~el~~~a~~~~~l~ng~v 550 (798)
.+..+.. ++..+. +.|.| ||++|||..++.+|++++.+.+|.+
T Consensus 177 t~~~V~~-ll~~~~~~~g~t-ii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 177 TAKEVLE-LLRELNKERGKT-IIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEcCCHHHHHhCCEEEEEeCCee
Confidence 8888866 555565 55887 9999999999999999999999984
No 32
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1e-20 Score=196.42 Aligned_cols=149 Identities=23% Similarity=0.265 Sum_probs=113.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----cc----------ccccccccccch--------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GL----------HILSSEYAKVPW-------- 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G~----------~vpa~~~~~i~~-------- 452 (798)
..|+.|++|+ ..|++++|+||+|||||||||+|+++...... |. +++. +..-+||
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ-~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ-EDALLPWLTVLDNVA 94 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec-cCcccchhhHHhhhe
Confidence 5799999999 99999999999999999999999876543321 11 1111 1111222
Q ss_pred ----------------hhHHhhhcCchhhHhhhhhhhhHHHHH-HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 453 ----------------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 453 ----------------~~~i~~~ig~~~si~~~lstfs~~~~r-i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
....+..+|..+.-......+||+|++ ++.+.+++.+|++|||||||++||......+-..++
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence 223345556666666677788998865 555557799999999999999999999999988888
Q ss_pred HHHHhcCCcEEEEEecchhHH-hhhccccceee
Q 003747 516 EAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 547 (798)
Q Consensus 516 ~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~n 547 (798)
+.+.+.+.| |+++|||.+.+ .++|+++.+.+
T Consensus 175 ~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 175 RLWEETRKT-VLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecC
Confidence 888888888 99999998777 58888888877
No 33
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=2e-20 Score=187.86 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=115.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccc----------ccccchhhHHhhhcCchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE----------YAKVPWFDSVFADIGDEQS 465 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~----------~~~i~~~~~i~~~ig~~~s 465 (798)
..++.+++++ ..|++++|+||||||||||+++|+++... ..|....... ...+++..+++..++..+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 4588899998 88999999999999999999999776433 2343211100 1124455556777788777
Q ss_pred HhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccc
Q 003747 466 LSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSN 542 (798)
Q Consensus 466 i~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~ 542 (798)
+......+|++++ ++..+.+++.+|+++||||||+|+|+.....+. .++..+.+. +.| +|++||+.+.. .+++++
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKT-VVMVLHDLNLAARYADRV 168 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEE
Confidence 7777788886654 556666789999999999999999997766665 466666665 777 89999998876 789999
Q ss_pred cceeeeEEEE
Q 003747 543 DFFENACMEF 552 (798)
Q Consensus 543 ~~l~ng~v~f 552 (798)
..+.+|++..
T Consensus 169 ~~l~~g~i~~ 178 (180)
T cd03214 169 ILLKDGRIVA 178 (180)
T ss_pred EEEECCEEEe
Confidence 9999988753
No 34
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=191.82 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=120.6
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh------------------------hccccccc------
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM------------------------MAKSGLHI------ 442 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~------------------------~aq~G~~v------ 442 (798)
++++.++.+++|. +.|++++|+||+|||||||||+|.++.- ..++|+.+
T Consensus 14 p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 4677899999999 9999999999999999999999965321 12233221
Q ss_pred ccc---------cccccchhh---------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEec
Q 003747 443 LSS---------EYAKVPWFD---------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 497 (798)
Q Consensus 443 pa~---------~~~~i~~~~---------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDE 497 (798)
|.. .-...+++. ..+.++|+.+...+..+++||+. +|+..+.+++++|+++|-||
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 100 000011111 12456777888888888999765 56666667899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 498 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
|+++|||.....++..+.+.-.+.|.| ||++.|+.+++ .||++++++.+|++.||+.
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~T-vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCE-EEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 999999988888766444444456888 99999999998 5999999999999999974
No 35
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.83 E-value=1.4e-19 Score=214.94 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=139.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------ccccccc---cccchhhH------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY---AKVPWFDS------ 455 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~~---~~i~~~~~------ 455 (798)
++.++.+++|. ..|++++|+||||||||||||+|++...+. .|. |++.... ....+.+.
T Consensus 331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 35688999998 889999999999999999999997653211 111 2222100 00111111
Q ss_pred -------------HhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 456 -------------VFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 456 -------------i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
++..++.. +.....++++|++++ ++..+.+++.+|++|||||||+|||+.....+. +.+.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~----~~l~~ 485 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE----ELLDS 485 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHHh
Confidence 22233432 334556677887665 556666778999999999999999996655443 33344
Q ss_pred cCCcEEEEEecchhHH-hhhcccccee-eeEEEEecccceeeEEeecC-CC-CCchHHHHHHHcCCChH-HHHHH-----
Q 003747 521 SGSLLTIATTHHGELK-TLKYSNDFFE-NACMEFDEVKLKPTYKILWG-VP-GRSSAINIAERLGLPGI-VVQNA----- 590 (798)
Q Consensus 521 ~g~t~VIitTHd~el~-~~a~~~~~l~-ng~v~fd~~~l~ptY~L~~G-~~-g~S~a~~iA~~~gl~~~-ii~~A----- 590 (798)
.++| ||+||||.++. .+|+++..+. +|.+..-..+.. .|.-... .. +....-.-.....-+.. .-.+.
T Consensus 486 ~~~t-vi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (635)
T PRK11147 486 YQGT-VLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH-DARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKLS 563 (635)
T ss_pred CCCe-EEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH-HHHHHHHHHHhhhhhhccccccccccccchhhhhhhhhc
Confidence 4667 99999998877 5899998887 788764332211 1210000 00 00000000000000000 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 591 RQLYGAASAEINEVIIEMERFKTQFLEHVHEAR------HFLMLSRNLHKNLLRTRRKILEHCASQR 651 (798)
Q Consensus 591 ~~~~~~~~~~le~~I~~Le~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 651 (798)
.+...+ ...+|+.|++||.++.++++++.... ..+.++.+.++++++++++++++|+++.
T Consensus 564 ~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 564 YKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112 45566677777777777776665432 1345555556666666667777775554
No 36
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.83 E-value=3.9e-20 Score=200.66 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=111.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccc--cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~--~~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..+.. .| ++|.... ..+.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcH
Confidence 35689999999 8999999999999999999999976532211 11 1221100 00011
Q ss_pred ---------------------hhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 ---------------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ---------------------~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
...++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 11223344555555556677887665 55666678999999999999999999666666
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++...+
T Consensus 164 ~-~~l~~~~~~g~t-vi~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 164 W-DYIRALKEEGVT-ILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred H-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 4 566777777887 99999998776 589999999999997654
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.83 E-value=3.9e-20 Score=201.24 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=111.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------ccccccccccc--ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA--KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~~--~i~~ 452 (798)
+..++++++|+ +.|++++|+||||||||||+|+|+++..... .| ++|..... .+.+
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv 97 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG-VVPQFDNLDPDFTV 97 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE-EEeccCcCCCCCcH
Confidence 35689999999 8899999999999999999999976532211 11 22221000 0111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..++..+......+.+|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence 11 112233444444455667887765 55566678999999999999999999776666
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..++..+.+.|.| ||++||+++.. .+|+++..+.+|++.+++
T Consensus 178 -~~~l~~l~~~g~t-ill~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 178 -WERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred -HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 4567777777887 99999998876 689999999999998764
No 38
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.7e-20 Score=185.73 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=112.7
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc--------ccc----------c---------cccc
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LSS----------E---------YAKV 450 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v--------pa~----------~---------~~~i 450 (798)
...|++|. ++|++++|.||||+||||+||+|+.+..+.+.-..+ |.. + ...+
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl 96 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL 96 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence 67899999 899999999999999999999998765554411111 100 0 0011
Q ss_pred chhhH---------------HhhhcCchhhHhhhhhhhhHHHHH-HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 451 PWFDS---------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 451 ~~~~~---------------i~~~ig~~~si~~~lstfs~~~~r-i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
.+|.. +...++..+.+......||.+|++ +..+.+++++|++++||||++|||......+ ..+
T Consensus 97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~df 175 (245)
T COG4555 97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDF 175 (245)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHH
Confidence 12211 223345556666677788877765 4445567999999999999999999666655 568
Q ss_pred HHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 515 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+..+...|.+ ||++||.++.. .+||+++.+.+|++.+.+
T Consensus 176 i~q~k~egr~-viFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 176 IKQLKNEGRA-VIFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred HHHhhcCCcE-EEEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 8888888987 99999997666 599999999999998754
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=5.8e-20 Score=202.61 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=111.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----c--------------cccccccc--cccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----G--------------LHILSSEY--AKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G--------------~~vpa~~~--~~i~~~ 453 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++...... | .++|.... ..+.+.
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 45689999999 88999999999999999999999765322110 0 12221100 011111
Q ss_pred h---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 D---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+ .++..++..+.......++|++|+ ++..+.+++.+|++|||||||+||||.....+.
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~ 212 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1 122333444444455667887775 455556779999999999999999997777665
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.++..+.+.|.| ||++||+++.. .+|+++..+.+|++.+++
T Consensus 213 -~~l~~l~~~g~t-ilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 213 -ERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred -HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 566667777887 99999998876 699999999999998765
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.4e-20 Score=188.01 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=106.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------cccccccc--cccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~--~~i~~~~ 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ....+.+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 4688999999 88999999999999999999999765321 112 11221100 0011111
Q ss_pred ---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 455 ---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 455 ---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
.++..++...........+|++++ ++..+.+++.+|++|||||||+|||+.....+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 122334444444455566776654 5666667799999999999999999977776654
Q ss_pred HHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 513 SLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 513 all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
++..+.+ .|.| ||++||+.++. .+|+++..+.+|.+..
T Consensus 172 -~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 172 -ELKELQRELGIT-TIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred -HHHHHHHHcCCE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 5566655 4777 99999998765 6899999999998764
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=9.6e-20 Score=188.22 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=108.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------ccccccccc--ccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~~--~i~~~ 453 (798)
..++++++++ ..|++++|+||||||||||||+|+++.... .| .++|..... .+...
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 4688999999 889999999999999999999997653211 11 122211000 01111
Q ss_pred h---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 1 12333444444455556777655 5566666789999999999999999997777665
Q ss_pred HHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 512 MSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 512 ~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
. ++..+... |.+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 ~-~l~~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 172 E-YIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred H-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 4 55566654 787 99999998776 58999999999998754
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=7.9e-20 Score=186.85 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=105.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------cccccccc---cccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY---AKVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------~~vpa~~~---~~i~~~~ 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 4688999998 889999999999999999999997653211 11 12222100 0011111
Q ss_pred -----------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 455 -----------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 455 -----------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
.++..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIR 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHH
Confidence 123334444444445566776654 55666677899999999999999999666666 45666
Q ss_pred HHHhcCCcEEEEEecchhHH-hhhccccceeeeEE
Q 003747 517 AFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 550 (798)
Q Consensus 517 ~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v 550 (798)
.+.+.|.| +|++||+.+.. .+|+++..+.+|++
T Consensus 171 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 171 ELAAQGKA-VIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 77667887 99999998776 58999988888875
No 43
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=8.8e-20 Score=180.71 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=100.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccc-cccchhhHHhhhcCchhhHhhhhhhhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTFS 474 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lstfs 474 (798)
..+..+++|+ ..|++++|+||||+||||||++|+++.... .|...-.... ......+.....++. +..+|
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS 84 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAGIAM-------VYQLS 84 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcCeEE-------EEecC
Confidence 4689999999 889999999999999999999997654322 2322111000 000000000011111 11166
Q ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 475 GHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 475 ~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
+++ +++..+.+++.+|+++||||||+|||+.....+.. ++..+.+.|.| +|++||+.+.. .+|+++..+.+|++.+
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~~~~t-iii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK-VIRRLRAQGVA-VIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 554 56666667899999999999999999977776654 66666666887 99999998754 6899999999988753
No 44
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=7e-20 Score=181.22 Aligned_cols=131 Identities=31% Similarity=0.465 Sum_probs=101.7
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcc----------cccccccccccccchhhHHhhhcCchhhHh
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------SGLHILSSEYAKVPWFDSVFADIGDEQSLS 467 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------~G~~vpa~~~~~i~~~~~i~~~ig~~~si~ 467 (798)
.+++++.+.++ ++++|+|||||||||+||+++....+++ .|+++|+ ....+ ++..++
T Consensus 11 ~~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-----i~~~~~------ 77 (162)
T cd03227 11 FVPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA-VSAEL-----IFTRLQ------ 77 (162)
T ss_pred EeccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee-eEEEE-----ehheee------
Confidence 47888988754 7899999999999999999999888888 7877776 33332 333332
Q ss_pred hhhhhhhHHHHHHHHHHHhCC--CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 468 QSLSTFSGHLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 468 ~~lstfs~~~~ri~~il~~a~--~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
+|....++..+..++.... +|+++|||||++||||.++..+...+.+.+.+ +++ +|++||+.++..++++...+
T Consensus 78 --lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~-vii~TH~~~~~~~~d~~~~l 153 (162)
T cd03227 78 --LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQ-VIVITHLPELAELADKLIHI 153 (162)
T ss_pred --ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEcCCHHHHHhhhhEEEE
Confidence 4444455555666665544 89999999999999999999999888877665 777 99999999999888766554
No 45
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=1.3e-19 Score=185.55 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=108.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~ 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ...+.+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 5689999999 88999999999999999999999765321 111 122221000 011111
Q ss_pred -----------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 455 -----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 455 -----------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
.++..++..+........+|+++ +++..+.+++.+|+++||||||+|||+.....+. .++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR-ELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHHH
Confidence 12333445445555566777655 4566667789999999999999999997766665 4666
Q ss_pred HHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 517 AFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 517 ~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
.+.+.|.| +|++||+.+.. .+|+++..+.+|++..
T Consensus 171 ~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 171 SLRDQGIT-VLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHCCCE-EEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 66667787 99999998876 5899999999998754
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=9.3e-20 Score=187.79 Aligned_cols=150 Identities=18% Similarity=0.243 Sum_probs=104.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------ccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY--A 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~--~ 448 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... .
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4689999999 889999999999999999999997653211 111 1111000 0
Q ss_pred ccchh---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 449 KVPWF---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 449 ~i~~~---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+.+. ..++..+|..........++|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 00111 112333444444455556777655 45666667899999999999999999966
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeE
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENAC 549 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~ 549 (798)
...+. .++..+.+ .|.| ||++||+.+...+|+++..+.+|.
T Consensus 176 ~~~l~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 176 GKEVM-ELLRELNKEAGTT-IVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHH-HHHHHHHHhcCCe-EEEEECCHHHHhhhcEEEEeeCCc
Confidence 66664 46666665 5787 999999988777888888887775
No 47
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.3e-19 Score=187.34 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=106.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------cccccccc--cccchhh---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFD--- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------~~vpa~~~--~~i~~~~--- 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 4689999999 889999999999999999999997653221 12 12221100 0011111
Q ss_pred ------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 455 ------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 455 ------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
.++..++..+........+|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~-~l 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE-EL 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH-HH
Confidence 12233444444445556777665 55666667899999999999999999977777655 55
Q ss_pred HHHH-hcCCcEEEEEecchhHH-hhhcccccee--eeEEEEe
Q 003747 516 EAFA-ESGSLLTIATTHHGELK-TLKYSNDFFE--NACMEFD 553 (798)
Q Consensus 516 ~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~--ng~v~fd 553 (798)
..+. +.|.| ||++||+.+.. .+|+++..+. +|.+...
T Consensus 175 ~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 175 LDIWRETGKT-VLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 5554 45777 99999998754 6899998888 6888653
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.4e-19 Score=188.89 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=107.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------ccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~--~~ 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 4689999999 889999999999999999999997653221 111 1221000 00
Q ss_pred cchhhH----------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 450 VPWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 450 i~~~~~----------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
..+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 111111 1222333333344456677665 55666667899999999999999999966
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
...+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 172 ~~~l~-~~l~~~~~~~~~t-vi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 172 SGVID-DLIRSLKKELGLT-SIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHH-HHHHHHHHhcCcE-EEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 66665 46666665 4787 99999998765 589999999999987653
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.81 E-value=1.2e-19 Score=197.07 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=110.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------ccccccccc--ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~~--~i~~ 452 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .+.+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD-RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 34689999999 889999999999999999999997653211 11 122211000 0111
Q ss_pred hhH---------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FDS---------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~~---------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+. ++..++..+........+|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 111 22233444444455567887665 55666677999999999999999999776666
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 175 ~-~~l~~~~~~g~t-il~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 175 W-ERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred H-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 466667777887 99999998876 589999999999987654
No 50
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.7e-19 Score=185.04 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=106.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------ccccccc--cccchhh--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD-- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------~vpa~~~--~~i~~~~-- 454 (798)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .|. ++|.... ....+.+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 4688999999 889999999999999999999997653211 121 2221100 0011111
Q ss_pred -------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 455 -------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 455 -------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
+++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~-~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD-V 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-H
Confidence 12233444444444556677655 45566667899999999999999999977666654 6
Q ss_pred HHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 515 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
++.+.+.|.| ||++||+.+.. .+|+++..+.+|.+..
T Consensus 171 l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 171 IRELARAGKT-VILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHCCCE-EEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 6666666787 99999998876 5899999999998754
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=1.1e-19 Score=187.21 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=104.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~--~~ 449 (798)
+.+..+++++ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT-RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 3589999999 889999999999999999999997653211 11 11221000 00
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 11111 12233444444444556677655 566666778999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeE
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 549 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~ 549 (798)
..+.. ++..+.+.|.| ||++||+.++. .+|+++..+.+|.
T Consensus 175 ~~l~~-~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 175 RDIMR-LFEEFNRRGTT-VLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77654 66666666887 99999998876 4888888887775
No 52
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.81 E-value=1.5e-19 Score=186.65 Aligned_cols=151 Identities=18% Similarity=0.163 Sum_probs=104.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------ccccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA-- 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~~-- 448 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT-SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 4688999999 889999999999999999999997653211 11 112210000
Q ss_pred ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 449 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 449 ~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
...+.+ .++..+|..+........+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 011111 12233344444445556777665 45666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEE
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 550 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v 550 (798)
...+.. ++..+.+ .|.| ||++||+.++...++++..+.+|.+
T Consensus 177 ~~~l~~-~l~~~~~~~~~t-ii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 177 AKIIFD-LMLELNRELNTS-FLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 776654 6666654 4777 9999999988877888888888775
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.81 E-value=2.2e-19 Score=184.34 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=106.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------cccccccc--cccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~--~~i~~~~ 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 4688999999 889999999999999999999997653211 11 11221000 0011111
Q ss_pred ---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 455 ---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 455 ---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
.++..++..+........+|++++ ++..+.+++.+|+++||||||+|+|+.....+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123334444445555567776655 5566667799999999999999999977776655
Q ss_pred HHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 513 SLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 513 all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..
T Consensus 172 -~l~~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 172 -ELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred -HHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 5556665 4787 99999998765 5899998999988754
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=1.4e-19 Score=187.15 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=111.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------------ccccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------------SGLHILSSE 446 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------------~G~~vpa~~ 446 (798)
++.+.+|++|+ ++|++++++||+||||||+||+|..+.-... .|+|..-.-
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 56789999999 9999999999999999999999965432221 222110000
Q ss_pred ccccch---------------hhHHhhhcCch--hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 447 YAKVPW---------------FDSVFADIGDE--QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 447 ~~~i~~---------------~~~i~~~ig~~--~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
...+.. .+.++..+|.+ +......+.+||+. +|+.-+.+++.+|+++||||||+++||....
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 000000 12234444443 34555667777655 5666666789999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 509 ALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 509 al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
.+-..+.+.-.+.|.| ||+||||++.+ .+++++..+..|.+.
T Consensus 173 ~lQ~e~~~lq~~l~kT-ivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 173 QLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHHHHhhhceEEEecCCeEE
Confidence 9877666655667888 99999998877 699999999888886
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=1.4e-19 Score=185.50 Aligned_cols=149 Identities=24% Similarity=0.258 Sum_probs=103.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc---cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~---~~i~ 451 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 4688999999 889999999999999999999997653211 11 12222110 0011
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+ .++..++....+....+.+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 12233444444445556778665 45666667899999999999999999977777
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeee
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 548 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng 548 (798)
+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|
T Consensus 173 ~~~-~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 173 LLE-LLKKLKAEGKT-IIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCC
Confidence 655 56666666887 99999998776 478888877665
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.81 E-value=1.9e-19 Score=187.15 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=106.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i~ 451 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4688999998 889999999999999999999997653211 110 1121000 0001
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+ .++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 111 11222333333344455677655 55666677899999999999999999977666
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccceeeeEEEEe
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~e-l~~~a~~~~~l~ng~v~fd 553 (798)
+. .++..+.+.|.| ||++||+.+ +..+|+++..+.+|++...
T Consensus 172 ~~-~~l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 172 IQ-KIIKILKDRGIG-VLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred HH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 65 466677767887 999999986 4568999999999998654
No 57
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.80 E-value=2.7e-19 Score=190.10 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=110.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------cccccccc--ccchh---
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILSSEYA--KVPWF--- 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------~vpa~~~~--~i~~~--- 453 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|..... ...+.
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHH
Confidence 35689999999 889999999999999999999997653221 111 22211000 00111
Q ss_pred ------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-
Q 003747 454 ------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA- 519 (798)
Q Consensus 454 ------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~- 519 (798)
..++..++..+......+.+|++++ ++..+.+++.+|+++||||||+|||+.....+.. ++..+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~ 181 (257)
T PRK11247 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD-LIESLWQ 181 (257)
T ss_pred HhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHH
Confidence 1233445555555556677887665 5666667799999999999999999977666655 555554
Q ss_pred hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 520 ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 182 ~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 182 QHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 45787 99999998875 689999999999987653
No 58
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=8.2e-20 Score=183.62 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=104.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-----cccccccccchh--hHHhhhcCchh-hHh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----ILSSEYAKVPWF--DSVFADIGDEQ-SLS 467 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-----vpa~~~~~i~~~--~~i~~~ig~~~-si~ 467 (798)
..++.+++|+ ..|++++|+||||||||||||++.. ..|.. .+......+.++ .+.+..++... .+.
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~ 82 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLG 82 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccC
Confidence 5688999999 8899999999999999999999831 11211 111001112222 23456666654 356
Q ss_pred hhhhhhhHHHH-HHHHHHHhCCC--CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 468 QSLSTFSGHLK-QIGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 468 ~~lstfs~~~~-ri~~il~~a~~--psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
.....+|++++ ++..+.+++.+ |+++|||||++|+|+.....+.. ++..+.+.|.| ||++||+.++..+++++..
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~g~t-vIivSH~~~~~~~~d~i~~ 160 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNT-VILIEHNLDVLSSADWIID 160 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCEEEE
Confidence 66777887665 55555667888 99999999999999977777655 55566667887 9999999988888888877
Q ss_pred eeeeEE
Q 003747 545 FENACM 550 (798)
Q Consensus 545 l~ng~v 550 (798)
+.+|..
T Consensus 161 l~~g~~ 166 (176)
T cd03238 161 FGPGSG 166 (176)
T ss_pred ECCCCC
Confidence 766544
No 59
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=180.64 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------ccc-cccccccc---c
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL-HILSSEYA---K 449 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~-~vpa~~~~---~ 449 (798)
+++.|.++++|+ ..|++++++||||+||||.+.++.++..... .|. |+|. +.+ .
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQ-E~SIFr~ 93 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQ-EASIFRK 93 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccc-cchHhhc
Confidence 457899999999 9999999999999999999999966543221 121 2332 111 1
Q ss_pred cchhhHHh-----------------------hhcCchhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 450 VPWFDSVF-----------------------ADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 450 i~~~~~i~-----------------------~~ig~~~si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+.+++. ..+.+.....+.-.++|| +.+|+..+.+++.+|+++||||||+|.||.
T Consensus 94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 (243)
T ss_pred CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence 12222221 111111111112223454 455566666778999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecc-hhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd-~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+ ..++.+|.++|.- |++|-|+ .+...+|++.+.+..|++.+.+
T Consensus 174 aV~dI-q~iI~~L~~rgiG-vLITDHNVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 174 AVIDI-QRIIKHLKDRGIG-VLITDHNVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred hHHHH-HHHHHHHHhCCce-EEEccccHHHHHhhhheEEEEecCeEEecC
Confidence 77776 5699999999997 9999998 4666899999999999998765
No 60
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.7e-19 Score=183.02 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=108.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh-hccccccccccc------ccccchhh---HHhhhcCchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSE------YAKVPWFD---SVFADIGDEQS 465 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~-~aq~G~~vpa~~------~~~i~~~~---~i~~~ig~~~s 465 (798)
+.+.++++++ ..|++++|+||||||||||||+|++... .+..|....... ...+.+.. .++..+...++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 4688999999 8899999999999999999999987532 233443221100 01122211 22333455555
Q ss_pred Hhhhh--hhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH--Hhhhc
Q 003747 466 LSQSL--STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKY 540 (798)
Q Consensus 466 i~~~l--stfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el--~~~a~ 540 (798)
+.... ..+|+++ +++..+.+++.+|+++|||||++|+|+.....+. .++..+.+.|.| +|++||+.+. ..+++
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iiivtH~~~~~~~~~~d 177 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQA-ILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCE-EEEEEcCChHHHHhhCC
Confidence 54322 2677655 5566666789999999999999999996666664 466677767887 9999999863 57899
Q ss_pred cccceee-eEEEE
Q 003747 541 SNDFFEN-ACMEF 552 (798)
Q Consensus 541 ~~~~l~n-g~v~f 552 (798)
++..+.+ |.+.+
T Consensus 178 ~i~~l~~~g~i~~ 190 (192)
T cd03232 178 RLLLLKRGGKTVY 190 (192)
T ss_pred EEEEEcCCCeEEe
Confidence 9988888 88865
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=3e-19 Score=183.97 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=107.5
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------cccccc--ccccchh-
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSE--YAKVPWF- 453 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~--~~~i~~~- 453 (798)
.+..+++++ ..|++++|+||||||||||||+|+++.... .|. ++|... .....+.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 689999999 889999999999999999999997654221 111 122100 0001111
Q ss_pred --------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 454 --------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 454 --------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
.+++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+.....+..
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 112334455544555566677655 55666667899999999999999999977766654
Q ss_pred HHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 513 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 513 all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
++..+.+.|.| ||++||+.+.. .+++++..+.+|.+..
T Consensus 178 -~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 178 -FIRQLRALGKC-ILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred -HHHHHHHCCCE-EEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 66666666887 99999998765 6899999999998864
No 62
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.80 E-value=3.3e-19 Score=186.28 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=108.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------cccccccc--cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~--~~i~~ 452 (798)
++.++.+++++ ..|++++|+||||||||||||+|+++..+. .| .++|.... ....+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 35689999999 889999999999999999999997653211 11 12221100 00111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..+|...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 12233344444445556677655 556667778999999999999999999777777
Q ss_pred HHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 511 GMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 511 ~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.. ++..+.+ .|.| +|++||+.+....|+++..+.+|++..+
T Consensus 172 ~~-~l~~~~~~~~~t-iii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 172 VA-HVRALCRDQGLS-VLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred HH-HHHHHHHhCCCE-EEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 65 5556654 5787 9999999988777999999999998754
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.4e-19 Score=186.22 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=105.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~--~~ 449 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 4689999999 889999999999999999999997653211 11 11221000 00
Q ss_pred cchhhH-----------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 450 VPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 450 i~~~~~-----------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
..+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 111111 1222333333333445677655 5566666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd 553 (798)
+|||+.....+.. ++..+.+ .|.| ||++||+.+... +|+++..+.+|.+...
T Consensus 173 ~~LD~~~~~~l~~-~l~~~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 173 ASLDPASSRQVMD-LLKRINREEGIT-VIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred ccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999977666654 6666654 4787 999999988775 8999999999998654
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.80 E-value=3e-19 Score=186.15 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=106.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------cccccccc--cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~--~~i~ 451 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4588899998 889999999999999999999997653211 11 11221000 0001
Q ss_pred hhh-------------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 452 WFD-------------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 452 ~~~-------------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
+.+ .++..++.........+.+|+++ +++..+.+++.+|++|||||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 11222333333344456677665 4566666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
+|||+.....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 ~~LD~~~~~~l~-~~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 172 AGLNPEETEELA-ELIRELRERGIT-VLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred ccCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 999997666665 466666667887 99999998876 58999999999998754
No 65
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.6e-19 Score=185.64 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=104.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--A 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~--~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 4689999999 88999999999999999999999765321 111 11221000 0
Q ss_pred ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 449 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 449 ~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
...+.+ .++..+|..+........+|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 001111 122233443334444556776554 5566667899999999999999999976
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
...+. .++..+.. .|.| ||++||+.+....++++..+.+|++..
T Consensus 181 ~~~l~-~~l~~~~~~~g~t-vii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 181 ADSIF-QLLGELNRLQGTA-FLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHH-HHHHHHHHhCCCE-EEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 66665 46666654 5787 999999998887667788888888764
No 66
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=1.6e-19 Score=180.29 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=99.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-cccc---------ccccchhhHHhhhcCchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE---------YAKVPWFDSVFADIGDEQS 465 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v-pa~~---------~~~i~~~~~i~~~ig~~~s 465 (798)
..+..++++. ..|++++|+||||+||||||++|+++.... .|... .... ...+.++.+-...+. .+
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~--~t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS--GS 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEECCCCcccc--Cc
Confidence 3588899988 889999999999999999999997764332 23211 1100 011112111100010 12
Q ss_pred HhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 466 LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 466 i~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
+..++ +|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.|.| +|++||+.+...+|+++..
T Consensus 92 v~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~t-ii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 92 IAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGAT-RIVIAHRPETLASADRILV 167 (173)
T ss_pred HHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCEEEE
Confidence 22332 66554 56666677899999999999999999977777654 66666666887 9999999988888888877
Q ss_pred eeeeE
Q 003747 545 FENAC 549 (798)
Q Consensus 545 l~ng~ 549 (798)
+.+|.
T Consensus 168 l~~G~ 172 (173)
T cd03246 168 LEDGR 172 (173)
T ss_pred EECCC
Confidence 77764
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.5e-19 Score=185.52 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=107.6
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------ccccccccc--cc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--KV 450 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~~--~i 450 (798)
.+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 688999999 889999999999999999999997653211 11 112211000 01
Q ss_pred chhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 11111 2233444444445556778655 5666666789999999999999999997766
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.. ++..+.+. |.| ||++||+.+.. .+|+++..+.+|++..+.
T Consensus 178 ~l~~-~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 178 SILA-LLRDINRELGLT-IVLITHEMEVVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 6654 55566554 787 99999998876 589999999999987543
No 68
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.80 E-value=3.3e-19 Score=185.12 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=104.6
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc--cc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--AK 449 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~--~~ 449 (798)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 488999999 889999999999999999999997653211 11 11221000 00
Q ss_pred cchhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
....+. ++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 111111 1223344444444556677655 556666678999999999999999999776
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEE
Q 003747 508 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACME 551 (798)
Q Consensus 508 ~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~ 551 (798)
..+.. ++..+.. .|.| ||++||+.++...|+++..+.+|.+.
T Consensus 183 ~~l~~-~l~~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 183 DKIAD-LLFSLNREHGTT-LILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEE
Confidence 66654 5656654 4777 99999999888888888888888874
No 69
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=2e-19 Score=185.73 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=109.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc---------cccc---------------ccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------LSSE---------------YAK 449 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v---------pa~~---------------~~~ 449 (798)
|+-.+.+|++|+ +.|++++|+||||+||||++++|.++..+.. |... |+.. ...
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~-G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS-GTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC-ceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 456799999999 9999999999999999999999965433221 2111 1000 111
Q ss_pred cchhhHH---------------------------------hhhcCchhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEE
Q 003747 450 VPWFDSV---------------------------------FADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLL 495 (798)
Q Consensus 450 i~~~~~i---------------------------------~~~ig~~~si~~~lstfs~-~~~ri~~il~~a~~psLLLL 495 (798)
+++.+++ +..+|..+......+.++. +++++..+.+++++|.||||
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 1111221 1122222223333334454 44455555677999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 496 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 496 DEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||.+|++|.+...+.. ++..+.+ .|.| |+++.||+.+. .+|+++..+..|++.+++
T Consensus 174 DEPaAGln~~e~~~l~~-~i~~i~~~~g~t-illIEHdM~~Vm~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 174 DEPAAGLNPEETEELAE-LIRELRDRGGVT-ILLIEHDMKLVMGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred cCccCCCCHHHHHHHHH-HHHHHHhcCCcE-EEEEEeccHHHhhhccEEEeccCCcCcccC
Confidence 99999999999999976 6666776 4677 99999999988 599999999999988765
No 70
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.80 E-value=2.9e-19 Score=183.60 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=102.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------cccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEYA--K 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~~--~ 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|..... .
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4688999999 88999999999999999999999765321 1121 12210000 0
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 01111 12233344444444556777655 556666678999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeee
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 548 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng 548 (798)
..+.. +++.+.+.|.| ||++||+.+.. .+|+++..+.+|
T Consensus 174 ~~l~~-~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 174 ERILD-LLKRLNKRGTT-VIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEecCC
Confidence 76654 66666666887 99999998776 478888777665
No 71
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.2e-19 Score=186.74 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=107.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~ 454 (798)
..++.+++++ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 4689999999 889999999999999999999997653211 11 112210000 011111
Q ss_pred -------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 455 -------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 455 -------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.++..++..........++|+++ +++..+.+++.+|++|||||||+|+|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11233344333444456677655 5566666788999999999999999997766
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 174 ~l~-~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 174 ELR-RWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 665 466666654 787 99999998764 689999999999987543
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.7e-19 Score=188.87 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=112.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-c------------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-I------------------------LSSEYAKV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-v------------------------pa~~~~~i 450 (798)
..+..++++. ..|+.++|+||||||||||+++++++..... |.. + |......-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-CEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 5789999999 8899999999999999999999977654332 211 1 00000000
Q ss_pred ch---------------------hhHHhhhcCchhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PW---------------------FDSVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~---------------------~~~i~~~ig~~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+ ....+..+|..+.......++|++ +++++.+..++.+|.+|||||||+||||....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 01 112233445555556666777754 55666666779999999999999999996666
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
.+ ..++..|... |.| +|++|||++.. .+|++++.+.+|.+..++.
T Consensus 176 ~l-~~~l~~L~~~~~~t-ii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 176 EL-LELLKKLKEEGGKT-IIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HH-HHHHHHHHhcCCCe-EEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 66 4577778776 577 99999998887 5899999999999977654
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=4e-19 Score=186.08 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=106.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------ccccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--K 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~~--~ 449 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4688999999 889999999999999999999997653211 11 112210000 0
Q ss_pred cchhhH-----------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 450 VPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 450 i~~~~~-----------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
..+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111111 1223344333444455677655 5566666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
+|+|+.....+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 174 ~~LD~~~~~~l~-~~l~~~~~~~~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 174 ASLDPKTSKQVM-DYLKRINKEDGIT-VIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 999997666665 46666654 4777 99999998876 68999999999988653
No 74
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.80 E-value=3.3e-19 Score=193.42 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=109.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------cccccccc--cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~--~~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+..
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~-~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 35689999999 899999999999999999999997653211 11 11221100 00111
Q ss_pred h---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 F---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
. ..++..+|..+......+.+|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 1123334555445556667787665 55666678999999999999999999666665
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+.+ +.| ||++||+++.. .+|+++..+.+|++.+.+
T Consensus 173 ~-~~l~~~~~-~~t-iii~sH~l~~~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 173 R-NVIKNIGK-DKT-IILSTHIMQEVEAICDRVIIINKGKIVADK 214 (301)
T ss_pred H-HHHHHhcC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 4 56666654 677 99999998755 699999999999998754
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.80 E-value=3.5e-19 Score=200.07 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=112.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---------------------ccccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEYA--KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---------------------~G~~vpa~~~~--~i~ 451 (798)
++.++++++|+ ..|++++|+||||||||||||+|+++..... .| ++|..... .++
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~~t 93 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFEFD 93 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCCCC
Confidence 45789999999 8999999999999999999999976532211 11 12211000 011
Q ss_pred hh-------------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WF-------------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~-------------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+. ...+..++..+........+|+++ +++..+.+++++|++|||||||+|||+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 11 122333444444555566777655 5666666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+. .++..+.+.|.| ||++||+.++. .+|+++..+.+|++..++
T Consensus 174 ~~~~l~-~lL~~l~~~g~T-IIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 174 HQVRTL-ELVRRLVDDGKT-AVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 777765 577777767887 99999998887 699999999999998754
No 76
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.80 E-value=3e-19 Score=183.46 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=104.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------ccccccccc----ccchhh-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEYA----KVPWFD- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------~~vpa~~~~----~i~~~~- 454 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .....+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 4688999999 889999999999999999999997653211 11 122221100 011111
Q ss_pred ------------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 455 ------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 455 ------------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
.++..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 123334444445555667786654 5566667789999999999999999977777
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEE
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 550 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v 550 (798)
+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+
T Consensus 171 l~~-~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 171 IYE-LLRELRREGMT-ILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHH-HHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 655 55566667787 99999998776 58888888877543
No 77
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=4.4e-19 Score=184.39 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=107.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc--------ccc---cccccchhh---------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LSS---EYAKVPWFD--------- 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v--------pa~---~~~~i~~~~--------- 454 (798)
++.++.+++|+ ..|++++|+||||||||||+|+|+++.... .|... +.. -....++.+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~ 112 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL 112 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence 45799999999 889999999999999999999997653221 12100 000 000011111
Q ss_pred ------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 455 ------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 455 ------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
.++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++..+.+.
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~-~l~~~~~~ 191 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQR-RLRELLKQ 191 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhC
Confidence 12223344444455556777655 45566667789999999999999999977777655 55556666
Q ss_pred CCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 522 GSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 522 g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
|.| ||++||+.+.. .+++++..+.+|++..
T Consensus 192 ~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 192 GKT-VILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 777 99999998876 5899999999988754
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5e-19 Score=189.96 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=110.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc---cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~---~~i~ 451 (798)
..++.+++|+ ..|++++|+||||||||||+|+|+++.... .| .+++.... ....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 3589999999 889999999999999999999997653221 11 11221000 0001
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+ .++..+|+.+........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 111 12333445444555556777655 56677778899999999999999999976666
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+. .++..+.+. |.| ||++||+.+...+|+++..+.+|++..++
T Consensus 179 l~-~~l~~l~~~~g~t-ilivtH~~~~~~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 179 LI-KTIKGIRDDYQMT-VISITHDLDEVALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 65 566666654 887 99999998887889999999999998764
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=4.1e-19 Score=182.36 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=103.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------ccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~--~~ 449 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|.... ..
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 4689999999 88999999999999999999999765321 1121 1121000 00
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 01111 12223344444444556677655 456666677999999999999999999776
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeE
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENAC 549 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~ 549 (798)
..+.. ++..+.+.|.| +|++||+.+... +|+++..+.+|.
T Consensus 173 ~~~~~-~l~~~~~~~~t-iiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 173 WEIMN-LLKKINKAGTT-VVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 66654 56666666887 999999988764 788888887775
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5.6e-19 Score=189.13 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=110.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc---cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~---~~i~ 451 (798)
..+..+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ....
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 4689999999 889999999999999999999997653221 11 12222100 0001
Q ss_pred hhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.++ ++..++...........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 1111 2223344444444556677665 45666667899999999999999999977777
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 177 l~~-~l~~~~~~g~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 177 LME-ILDRLHNQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred HHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 654 66667666887 99999999876 689999999999997654
No 81
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.79 E-value=6.3e-19 Score=182.54 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=110.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------ccccccc--cccchhh--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD-- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------~vpa~~~--~~i~~~~-- 454 (798)
..++.+++|+ ..|++++|+||||+||||||++|+++..+ ..|. ++|.... ......+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 5688999999 88999999999999999999999765321 1221 1221100 0011111
Q ss_pred ---------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Q 003747 455 ---------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518 (798)
Q Consensus 455 ---------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L 518 (798)
.++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH-HHHHHH
Confidence 12333455555555666777655 5566666779999999999999999997766665 466666
Q ss_pred HhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 519 AESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 519 ~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.|.+ ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 171 ~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 171 PEQGIT-VILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HHCCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 666887 99999998876 689999999999987543
No 82
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.79 E-value=4.8e-19 Score=182.74 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=107.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------cccccccc--ccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEYA--KVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~~~--~i~~~ 453 (798)
..++.+++++ ..|++++|+||||||||||||+|+++.... .|. ++|..... ...+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 5689999999 889999999999999999999997653221 121 11210000 00111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
..++..++..+.......++|+++ +++..+.+++.+|++|||||||+|+|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 112333444444445556677655 5666666789999999999999999997766665
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++...+
T Consensus 174 ~-~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 174 D-LILEVRK-GRS-IILTTHSMDEAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred H-HHHHHhc-CCE-EEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 4 6666655 576 99999998877 589999999999987643
No 83
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.5e-19 Score=178.89 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=100.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccc---------ccccchhhH---HhhhcCch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------YAKVPWFDS---VFADIGDE 463 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~---------~~~i~~~~~---i~~~ig~~ 463 (798)
..++++++++ ..|++++|+||||||||||||+|+++... ..|....... ...+.+..+ ++..+...
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 3588999999 88999999999999999999999776432 2232211000 011222111 12222333
Q ss_pred hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcc
Q 003747 464 QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYS 541 (798)
Q Consensus 464 ~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~ 541 (798)
+++. +|++ .+++..+.+++.+|+++||||||+|+|+.....+.. +++.+.+.|.| +|++||+.++.. ++++
T Consensus 92 ~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~t-iii~th~~~~~~~~~d~ 164 (173)
T cd03230 92 ENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE-LLRELKKEGKT-ILLSSHILEEAERLCDR 164 (173)
T ss_pred HHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCE-EEEECCCHHHHHHhCCE
Confidence 3332 6654 556677778899999999999999999977777655 66667666777 999999988765 8888
Q ss_pred ccceeeeE
Q 003747 542 NDFFENAC 549 (798)
Q Consensus 542 ~~~l~ng~ 549 (798)
+..+.+|.
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 88877764
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.79 E-value=5.9e-19 Score=184.75 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=108.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------ccccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEYA--KV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~~--~i 450 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ..
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4689999999 88999999999999999999999765321 111 112210000 00
Q ss_pred chhh----------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 451 PWFD----------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 451 ~~~~----------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
.+.+ .++..+|.........+.+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1111 12333444444455556777655 456666677899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+.|.| +|++||+.+.. .+|+++..+.+|++..++
T Consensus 173 ~~l~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 218 (240)
T PRK09493 173 HEVLK-VMQDLAEEGMT-MVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218 (240)
T ss_pred HHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEeeC
Confidence 76654 66667766887 99999998877 589999999999987643
No 85
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.4e-19 Score=188.71 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------ccccccccc-
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA- 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~~- 448 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 45689999999 889999999999999999999997653221 11 111210000
Q ss_pred -ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 449 -KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 449 -~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+.+ .++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 001111 12233444444445556677655 5566667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+.. .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 195 ~~~~l~~-~l~~~~~~~g~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 195 IRREMQD-ELLRLQAELQKT-IVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 7666654 5556654 4777 99999998765 68999999999998654
No 86
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.79 E-value=6.6e-19 Score=181.78 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=104.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------cccccccc--cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~--~~i~ 451 (798)
..+..+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ..+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4688999999 889999999999999999999997653211 11 11221000 0001
Q ss_pred hhhHH-------------------hhhc-CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 452 WFDSV-------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 452 ~~~~i-------------------~~~i-g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+.+.+ +..+ +..+........+|+++ +++..+.+++.+|++|||||||+|||+.....+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 11111 1111 12222233344567555 456666677899999999999999999776666
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 172 ~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 172 FE-AIRELRDEGVT-ILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred HH-HHHHHHHCCCE-EEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 54 66666667787 99999998864 68999999999998654
No 87
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.79 E-value=5.6e-19 Score=194.86 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=111.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------ccccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--K 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~~--~ 449 (798)
..++.|++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 4689999999 889999999999999999999997653221 11 111210000 0
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+++ .++..+|..+......+.+|+++ +|+..+.+++.+|++|||||||+||||...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 01111 22334555555556667788665 566666778999999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 508 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 508 ~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
..+. .++..+.+. |.| ||++||+++.. .+|+++..+.+|++...
T Consensus 177 ~~i~-~lL~~l~~~~g~t-iiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 177 QSIL-ELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 7775 466666654 888 99999999887 68999999999998754
No 88
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.4e-19 Score=186.31 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=106.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------ccccccc--cccchhh---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILSSEY--AKVPWFD--- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------~vpa~~~--~~i~~~~--- 454 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ....+.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 4688999999 889999999999999999999997653221 121 1221100 0011111
Q ss_pred ------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 455 ------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 455 ------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
.++..++...........+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L 171 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT-LL 171 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HH
Confidence 12333444444445566778665 45666667789999999999999999977666654 56
Q ss_pred HHHH-hcCCcEEEEEecchhHH-hhhcccccee--eeEEEEe
Q 003747 516 EAFA-ESGSLLTIATTHHGELK-TLKYSNDFFE--NACMEFD 553 (798)
Q Consensus 516 ~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~--ng~v~fd 553 (798)
..+. +.|.| ||++||+.+.. .+|+++..+. +|++..+
T Consensus 172 ~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 172 LKLWQETGKQ-VLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 6664 45787 99999998876 5889888887 4888654
No 89
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.79 E-value=5.3e-19 Score=185.12 Aligned_cols=154 Identities=17% Similarity=0.202 Sum_probs=106.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------ccccccccc---ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA---KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~~---~i~ 451 (798)
.+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .+.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 45689999999 889999999999999999999997653211 11 112210100 011
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
..+ .++..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 111 112223444444445566776654 5566667899999999999999999977777
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 510 LGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 510 l~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
+.. ++..+.+. +.| ||++||+.++. .+|+++..+.+|.+..
T Consensus 192 l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 192 IRN-FLKEYNRERGTT-VLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHH-HHHHHHhcCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 655 55566554 777 99999998875 6899999999998864
No 90
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.3e-19 Score=195.51 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=110.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccc--ccccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSE--YAKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~--~~~i~~~ 453 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... |. ++|... ...+.+.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS-GEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 35688899999 8899999999999999999999987643211 11 111100 0001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
..++..+++.+........+|+++ +|+..+.+++.+|++|||||||+|||+.....+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 122334455555555666777655 5667777889999999999999999997777776
Q ss_pred HHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. .+..+.+ .|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 175 ~-~l~~l~~~~g~t-ii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 175 L-EIQRLHRRLKTT-SLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred H-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 5 4455554 4887 99999997655 699999999999997654
No 91
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.7e-19 Score=188.52 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=109.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc---ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY---AKV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~---~~i 450 (798)
..++.+++|+ ..|++++|+||||+|||||||+|+++... ..|. ++|.... ...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 4589999999 88999999999999999999999765321 1121 1121000 001
Q ss_pred chhhH---------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~~~~---------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+.+. ++..++...........+|++++ ++..+.+++.+|++|||||||+|||+....
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111 12233444444445566776654 556666789999999999999999996666
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.+. .++..+.+.|.| ||++||+.+....|+++..+.+|.+..++
T Consensus 174 ~l~-~~l~~l~~~g~t-il~~tH~~~~~~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 174 AVL-ERIKKLHEKGKT-IVYITHNLEELHDADRIIVMDRGKIVLEG 217 (274)
T ss_pred HHH-HHHHHHHhCCCE-EEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence 664 466667777887 99999998888889999999999987654
No 92
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.5e-19 Score=188.57 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=112.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccc-cc----------cccccchhh---HHhhhcC
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SS----------EYAKVPWFD---SVFADIG 461 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vp-a~----------~~~~i~~~~---~i~~~ig 461 (798)
..+..|++++ +.|++++++||||||||||||+|+++..... |.... .. ....++++- .+|.+|+
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hmt 93 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMT 93 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccchhhcceeEEEechhhcccch
Confidence 4566688888 8999999999999999999999988765543 22111 10 112233321 2456666
Q ss_pred chhhHhhhh---------------------------------hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 462 DEQSLSQSL---------------------------------STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 462 ~~~si~~~l---------------------------------stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+.|++..++ ..+| |+.++++.+.+++-.|++||||||+++||..-.
T Consensus 94 Va~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 94 VADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred HHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 666665544 1234 455677777888999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
..+-..+.+.....|.| ++++|||.+.+ .++++++.+.+|.++-.
T Consensus 174 ~~lr~wLr~~~~~~~~t-tvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 174 KELRRWLRKLHDRLGVT-TVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHHHhhCce-EEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 77755444444444888 89999998777 69999999999998754
No 93
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.5e-19 Score=194.57 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=109.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~--~~ 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 4689999999 889999999999999999999997653211 11 11221000 00
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..+|..+......+.+|++++ ++..+.+++.+|++|||||||+|||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11111 123334444445555667886654 56666678999999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.. .|.| ||++||+++.. .+|+++..+.+|++..++
T Consensus 177 ~~l~~-~L~~l~~~~g~t-iilvtH~~~~i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 177 RSILE-LLKDINRELGLT-IVLITHEMDVVKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 66654 6666654 4787 99999998876 589999999999987543
No 94
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.2e-19 Score=185.13 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=107.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------ccc-ccccccc--cccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL-HILSSEY--AKVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~-~vpa~~~--~~i~ 451 (798)
+..++.+++++ ..|++++|+|||||||||||++|+++..... .+. ++|.... ....
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 35689999999 8899999999999999999999976532111 011 1221100 0011
Q ss_pred hhhH------------------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEE
Q 003747 452 WFDS------------------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVL 494 (798)
Q Consensus 452 ~~~~------------------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLL 494 (798)
+.+. ++..+|..+........+|+++ +++..+.+++.+|++||
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111 1223344444445556677655 56666667899999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|||||+|||+.....+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 177 lDEPt~~LD~~~~~~l~-~~L~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 177 LDEPAAGLNPKETKELD-ELIAELRNEHNVT-VLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred EcCCccCCCHHHHHHHH-HHHHHHHhhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999997766664 466666654 787 99999998876 68999999999998754
No 95
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=4.4e-19 Score=181.94 Aligned_cols=150 Identities=18% Similarity=0.256 Sum_probs=102.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------ccccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEYA--KV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~~--~i 450 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ..
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 4688889998 88999999999999999999999765321 111 112210000 01
Q ss_pred chhhH----------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 451 PWFDS----------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 451 ~~~~~----------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
.+.+. ++..++....+......+|++++ ++..+.+++.+|++|||||||+|+|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 11111 22233444444455566776654 56666677999999999999999999666
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeE
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 549 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~ 549 (798)
..+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|+
T Consensus 172 ~~l~-~~l~~~~~~~~t-vi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 172 GEVL-DVMKDLAEEGMT-MVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6654 566677667787 99999998776 5899888887765
No 96
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.2e-19 Score=178.86 Aligned_cols=145 Identities=16% Similarity=0.273 Sum_probs=98.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-cccc-----------ccccchhhH---Hhhhc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE-----------YAKVPWFDS---VFADI 460 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v-pa~~-----------~~~i~~~~~---i~~~i 460 (798)
..++.+++++ ..|++++|+||||||||||||+|+++... ..|... .... ...+.+..+ ++..+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 4688999999 88999999999999999999999765332 223211 1100 001111111 11112
Q ss_pred CchhhHhhhhhh-hhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHh
Q 003747 461 GDEQSLSQSLST-FSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT 537 (798)
Q Consensus 461 g~~~si~~~lst-fs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~ 537 (798)
++...+.. +|++ .+++..+.+++.+|+++||||||+|+|+.....+. .++..+.+. |.| +|++||+.+...
T Consensus 92 ----t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~t-iii~sH~~~~~~ 165 (178)
T cd03229 92 ----TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGIT-VVLVTHDLDEAA 165 (178)
T ss_pred ----CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHH
Confidence 22222222 6655 45667777889999999999999999996666664 566667666 677 999999988775
Q ss_pred -hhccccceeee
Q 003747 538 -LKYSNDFFENA 548 (798)
Q Consensus 538 -~a~~~~~l~ng 548 (798)
+++++..+.+|
T Consensus 166 ~~~d~i~~l~~g 177 (178)
T cd03229 166 RLADRVVVLRDG 177 (178)
T ss_pred HhcCEEEEEeCC
Confidence 78888777665
No 97
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.1e-19 Score=183.75 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=105.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------cccccccc--ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEYA--KVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~~--~i~ 451 (798)
..+.++++++ ..|++++|+||||||||||||+|+++.... .|. ++|..... ...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 5689999999 889999999999999999999997653221 111 12210000 011
Q ss_pred hhhHH-------------------hhhc-CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 452 WFDSV-------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 452 ~~~~i-------------------~~~i-g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+.+.+ +..+ +..+........+|+++ +++..+.+++.+|++|||||||+|+|+.....+
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l 176 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 11111 1111 12222223344566555 556666678899999999999999999666665
Q ss_pred HHHHHHHHHhcCCcEEEEEecchh-HHhhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~e-l~~~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+.+.|.| ||++||+.+ +..+|+++..+.+|++...+
T Consensus 177 ~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (237)
T PRK11614 177 F-DTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVVLED 219 (237)
T ss_pred H-HHHHHHHHCCCE-EEEEeCcHHHHHhhCCEEEEEeCCEEEeeC
Confidence 4 466667777887 899999976 45799999999999987643
No 98
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.79 E-value=2.2e-19 Score=196.65 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=114.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc--------ccccccccccccchh---hHHhhhcCch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--------GLHILSSEYAKVPWF---DSVFADIGDE 463 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~--------G~~vpa~~~~~i~~~---~~i~~~ig~~ 463 (798)
+..+..|++|+ ..|+++.|+|||||||||+||+|+++..+... -..+|. +...++++ ..+|.+|++.
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hhcccceeecCcccCCCCcHH
Confidence 46789999999 88999999999999999999999887654431 011232 12222221 1234455555
Q ss_pred hhHhhh--------------------------------hhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 464 QSLSQS--------------------------------LSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 464 ~si~~~--------------------------------lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+|+..+ .+.+|| +.+|++.+.+++.+|.+||||||.++||..-...+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 544333 334554 45678888889999999999999999999888888
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
-..+.+...+.|.| .|++|||.+.+ .++|++..+.+|+++
T Consensus 176 r~Elk~lq~~~giT-~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 176 RKELKELQRELGIT-FVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred HHHHHHHHHhcCCe-EEEEECCHHHHhhhccceEEccCCcee
Confidence 77777766777998 89999998776 699999999999986
No 99
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=7.3e-19 Score=184.98 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=107.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------------ccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILSSE 446 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------------~~vpa~~ 446 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 4688999999 88999999999999999999999765321 111 1122100
Q ss_pred cc--ccchhhH----------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 447 YA--KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 447 ~~--~i~~~~~----------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.. .....+. ++..+|.........+.+|+++ +++..+.+++.+|++|||||||+|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00 0111111 1222333333344456677655 556666778999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
||+.....+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 175 LD~~~~~~l~-~~l~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 175 LDPELVGEVL-NTIRQLAQEKRT-MVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9996666665 466677767887 99999998776 58999999999998754
No 100
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.5e-19 Score=188.11 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=106.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------cccccccc---cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~---~~ 449 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 4688999999 889999999999999999999997653211 11 12222100 00
Q ss_pred cchhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 001111 1122233333333445677655 456666678999999999999999999776
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 173 ~~l~~-~l~~~~~~g~t-ii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 173 TQMIA-IIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 66654 66666666887 99999998876 689999999999987654
No 101
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=5.4e-19 Score=179.80 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=106.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh--hhcccccccc-cc------cccccchhh---HHhhhcCch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--MMAKSGLHIL-SS------EYAKVPWFD---SVFADIGDE 463 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~--~~aq~G~~vp-a~------~~~~i~~~~---~i~~~ig~~ 463 (798)
..+..+++++ ..|++++|+||||||||||||+|+++. .. ..|...- .. ....+.+.. .++..+...
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 4689999999 889999999999999999999998765 32 2342211 00 001122211 123334445
Q ss_pred hhHhhhhh--hhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchh--HHhh
Q 003747 464 QSLSQSLS--TFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTL 538 (798)
Q Consensus 464 ~si~~~ls--tfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~e--l~~~ 538 (798)
+++..... .+|+++ +++..+.+++.+|+++||||||+|||+.....+. .++..+.+.|.| +|++||+.+ +..+
T Consensus 101 ~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~~ 178 (194)
T cd03213 101 ETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRT-IICSIHQPSSEIFEL 178 (194)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCchHHHHHh
Confidence 55443221 567555 5566666789999999999999999997766665 566667767887 999999975 4568
Q ss_pred hccccceeeeEEEE
Q 003747 539 KYSNDFFENACMEF 552 (798)
Q Consensus 539 a~~~~~l~ng~v~f 552 (798)
++++..+.+|++..
T Consensus 179 ~d~v~~l~~G~i~~ 192 (194)
T cd03213 179 FDKLLLLSQGRVIY 192 (194)
T ss_pred cCEEEEEeCCEEEe
Confidence 99999999998754
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=99.79 E-value=7.9e-19 Score=181.67 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=105.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------ccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~--~~ 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|.... ..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4689999999 88999999999999999999999765321 1121 1221000 00
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..++..+......+.+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 01111 12233344444444556677655 456666677899999999999999999776
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
..+.. ++..+.+.+.+ +|++||+.++. .+|+++..+.+|.+.
T Consensus 174 ~~l~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 174 EGILR-LFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 66654 66666666787 99999998876 478888888888763
No 103
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.8e-19 Score=183.53 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=107.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------ccccccccc--cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEYA--KV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~~--~i 450 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ..
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 35689999999 889999999999999999999997653211 11 112211000 01
Q ss_pred chhhH----------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 451 PWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 451 ~~~~~----------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
.+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11111 1222333333334445677655 456666678999999999999999999666
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccceeeeEEEEe
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~e-l~~~a~~~~~l~ng~v~fd 553 (798)
..+. .++..+.+.|.| ||++||+.+ +..+|+++..+.+|++...
T Consensus 174 ~~l~-~~l~~~~~~g~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 174 IDIK-RIIEHLRDSGLG-VLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHHH-HHHHHHHhcCCE-EEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 6664 566677777887 999999985 5578999999999998764
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.9e-19 Score=188.12 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=110.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccc---ccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSE---YAKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~---~~~i~ 451 (798)
++++.+++|+ ..|++++|+||||+||||||++|+++.... .|. ++|... .....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 4689999999 889999999999999999999997653221 121 122100 00011
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+ .++..+|....+......+|++++ ++..+.+++.+|+||||||||+|||+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 111 122334454455555667786654 5666667799999999999999999977776
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.. ++..+.+. |.| ||++||+.+....|+++..+.+|.+.+++
T Consensus 179 l~~-~l~~l~~~~~~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 179 VLE-TVRQLKEQKGIT-VLSITHDLDEAAQADRVIVMNKGEILEEG 222 (279)
T ss_pred HHH-HHHHHHHcCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 654 66666665 777 99999998888789999999999987654
No 105
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.79 E-value=7.5e-19 Score=175.03 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=113.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-cc-----ccccccch---------------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LS-----SEYAKVPW--------------- 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v-pa-----~~~~~i~~--------------- 452 (798)
++..++.|++|+ +.|+++.|+||+|||||||||+|.+...... |... .. -....+++
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~-G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR-GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC-ceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 345689999999 8999999999999999999999965433322 1100 00 00111111
Q ss_pred -----hh---------------------HHhhhcCchhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 -----FD---------------------SVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 -----~~---------------------~i~~~ig~~~si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
++ ..+...|..+......+.+|+ +++|+..+.+.+++|.|||-||||.+|||.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 11 123334444444445566775 566777777889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
....++ .+++.+...|+| |+++|||.++.. +..++..+.+|.+..|.
T Consensus 172 ~s~~im-~lfeeinr~GtT-Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 172 LSWEIM-RLFEEINRLGTT-VLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHH-HHHHHHhhcCcE-EEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 777775 588889999998 999999999985 77788899999998765
No 106
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.79 E-value=6.4e-19 Score=179.98 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=108.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhcccccccc-cc---c-------ccccchhh---HHhhhc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHIL-SS---E-------YAKVPWFD---SVFADI 460 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~~vp-a~---~-------~~~i~~~~---~i~~~i 460 (798)
..+..+++++ ..|++++|+||||||||||||+|++.. +.+..|...- .. . ...+.+.. .++..+
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 4688999998 889999999999999999999998764 2333342211 00 0 00122211 122223
Q ss_pred CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh--
Q 003747 461 GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-- 537 (798)
Q Consensus 461 g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-- 537 (798)
...+.+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.+.| +|++||+.+...
T Consensus 93 ~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~L~~~~~~~~t-iii~sh~~~~~~~~ 170 (200)
T cd03217 93 KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAE-VINKLREEGKS-VLIITHYQRLLDYI 170 (200)
T ss_pred cHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHCCCE-EEEEecCHHHHHHh
Confidence 33443333334677655 55666667799999999999999999977766654 66666666787 999999998886
Q ss_pred hhccccceeeeEEEEec
Q 003747 538 LKYSNDFFENACMEFDE 554 (798)
Q Consensus 538 ~a~~~~~l~ng~v~fd~ 554 (798)
+++++..+.+|.+..+.
T Consensus 171 ~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 171 KPDRVHVLYDGRIVKSG 187 (200)
T ss_pred hCCEEEEEECCEEEEEc
Confidence 79999999999987654
No 107
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.6e-19 Score=189.39 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=109.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------cccccccccc---ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY---AKV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------~G~~vpa~~~---~~i 450 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ...
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 4689999999 8899999999999999999999976532111 0012232110 001
Q ss_pred chhh---------------------HHhhhcCch--hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 451 PWFD---------------------SVFADIGDE--QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 451 ~~~~---------------------~i~~~ig~~--~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+.+ .++..+|.. .........+|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 1111 123334443 234445567786665 5566667799999999999999999977
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
...+. .++..+.+. |.| ||++|||.+.. .+|+++..+.+|.+..++
T Consensus 180 ~~~l~-~~l~~l~~~~g~t-vi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 180 RDEIL-NKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 77665 466666654 787 99999998876 689999999999998764
No 108
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8e-19 Score=190.89 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=109.4
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------------------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------------------ 440 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------------------ 440 (798)
.++.+++|+ ..|++++|+||||||||||+|+|+++..... |.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT-GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-cEEEEeceecccccccccccccccccccccccccccch
Confidence 589999999 8899999999999999999999976532211 11
Q ss_pred ---------ccccccc---cccchhh---------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHH
Q 003747 441 ---------HILSSEY---AKVPWFD---------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIIS 485 (798)
Q Consensus 441 ---------~vpa~~~---~~i~~~~---------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~ 485 (798)
++|.... ....+.+ .++..+|.. +........+|++++ ++..+.+
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 2221100 0001111 123334443 344555667776654 5666667
Q ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 486 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
++.+|++|||||||+|||+.....+ ..++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+..++
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~g~t-iiivtHd~~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQGKT-IILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCCE-EEEEeeCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7999999999999999999666665 4567777777888 99999998765 799999999999998764
No 109
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=7.1e-19 Score=180.47 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=103.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------ccccccccc--ccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~~--~i~~~ 453 (798)
..+.++++|+ ..| +++|+||||||||||||+|+++.... .| .++|..... ...+.
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 4688888888 667 99999999999999999997653211 11 122211000 01111
Q ss_pred h---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 12223444444444556677655 5666666889999999999999999997666664
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
.+++.+.+ +.| ||++||+.+.. .+++++..+.+|++..
T Consensus 171 -~~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 171 -NLLSELGE-DRI-VILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred -HHHHHHhC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 56666665 576 99999998876 5899999999998764
No 110
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.8e-19 Score=189.23 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=109.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------ccccccc---c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSE---Y 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~---~ 447 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|... .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 4689999999 899999999999999999999997653211 11 1222210 0
Q ss_pred cccchhhH---------------------HhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 448 AKVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 448 ~~i~~~~~---------------------i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
....+.+. ++..++.. .........+|++++ ++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 00111111 12233443 233455567776655 55666677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 179 ~~~~~l~-~~l~~l~~~g~t-vlivsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 179 EGRKEMM-QLFKDYQKAGHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 7666664 567777767887 99999998876 699999999999987654
No 111
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.2e-19 Score=195.54 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=109.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccccc---ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~---~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .|. ++|. ... .+.+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~i~~v~Q-~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-SGDLFIGEKRMNDVPPAERGVGMVFQ-SYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHhHCCEEEEeC-CcccCCCCCH
Confidence 34688999999 889999999999999999999997754221 121 1221 100 0111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 12333455444455556777655 566667778999999999999999999777776
Q ss_pred HHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.. ++..+.. .|.| +|++|||.+.. .+|+++..+.+|.+...+
T Consensus 173 ~~-~L~~l~~~~g~t-vI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 173 RI-EISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HH-HHHHHHHHhCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 55 5555554 4887 99999998765 689999999999987543
No 112
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.78 E-value=1.1e-18 Score=186.33 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=106.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------ccccccccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA-- 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~~-- 448 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 35689999999 889999999999999999999997653211 11 112211000
Q ss_pred ccchhhHH----------------------hhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 449 KVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 449 ~i~~~~~i----------------------~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+.+.+ +..++..+......+.+|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 177 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177 (269)
T ss_pred CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 01111111 2223333333444566776655 556666778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 178 ~~~~l~~-~l~~~~~~~g~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 178 TMGVLVK-LISELNSALGVT-CVVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHHHHHH-HHHHHHHhcCcE-EEEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 7666654 55666554 777 99999997765 589999999999987653
No 113
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=4.3e-19 Score=176.32 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=98.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHH--hhhcCchhhHhh-hhhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ-SLST 472 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i--~~~ig~~~si~~-~lst 472 (798)
+.++.+++++ ..|++++|+||||||||||+++|++.... ..|..... ....++++.+- +...+..+++.. ....
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~-~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~ 91 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMP-EGEDLLFLPQRPYLPLGTLREQLIYPWDDV 91 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEEC-CCceEEEECCCCccccccHHHHhhccCCCC
Confidence 4688899999 88999999999999999999999765432 23422111 11122222111 112344444433 3456
Q ss_pred hhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeee
Q 003747 473 FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 548 (798)
Q Consensus 473 fs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng 548 (798)
+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+ +.| +|++||+.++..+|+++..+.++
T Consensus 92 LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~---~~t-iiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ-LLKEL---GIT-VISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH-HHHHh---CCE-EEEEeCChhHHhhCCEEEEEcCC
Confidence 77655 55666667799999999999999999976666544 44333 677 99999998887788877666543
No 114
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.78 E-value=9.2e-19 Score=182.60 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=102.7
Q ss_pred eeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------ccccccc--cccchhhH------
Q 003747 401 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILSSEY--AKVPWFDS------ 455 (798)
Q Consensus 401 ~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------~vpa~~~--~~i~~~~~------ 455 (798)
.+++|+ ..|++++|+||||||||||+|+|+++.... .|. ++|.... ....+.+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT-SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 356666 678999999999999999999997654221 121 2221000 00111111
Q ss_pred -----------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Q 003747 456 -----------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517 (798)
Q Consensus 456 -----------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~ 517 (798)
++..++..+......+.+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE-ELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-HHHH
Confidence 2233344444445556677665 45666667799999999999999999977777655 5555
Q ss_pred HHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 518 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 518 L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.+ .|.| ||++||+.+.. .+|+++..+.+|.+....
T Consensus 160 ~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 160 IWEEHRVT-VLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHhcCCE-EEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 554 4787 99999998765 689999999999987543
No 115
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=1e-18 Score=193.94 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=110.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------------------cccccccccccc-
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEYAK- 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------------------~G~~vpa~~~~~- 449 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++..... .-.++|. ...-
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q-~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ-QFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC-CCcCC
Confidence 45688999999 8999999999999999999999976532111 0011221 0000
Q ss_pred --cchh---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 450 --VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 450 --i~~~---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
..+. ..++..+|+..........+|++++ ++..+.+++.+|++|||||||+||||.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0111 1223445555555666677887665 556666789999999999999999998
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+...+. .+. ..|.| ||++|||.+.+ .+|+++..+.+|.+...
T Consensus 164 ~r~~l~~~l~-~l~~~~~~T-ii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 164 IRDSMQDELK-KLQATLQKT-IVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred HHHHHHHHHH-HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 8888766444 555 44887 99999998865 68999999999998643
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=1.1e-18 Score=185.14 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=105.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~--~i~ 451 (798)
+..++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|..... ...
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 34689999999 889999999999999999999997653211 11 122211000 011
Q ss_pred hhhH---------------------HhhhcCchhhHhhhhhhhhHHHHH-HHHHHHhC------CCCeEEEEecCCCCCC
Q 003747 452 WFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQS------TSQSLVLLDEIGAGTN 503 (798)
Q Consensus 452 ~~~~---------------------i~~~ig~~~si~~~lstfs~~~~r-i~~il~~a------~~psLLLLDEP~sGlD 503 (798)
+.+. ++..++..+........+|+++++ +..+.+++ .+|++|||||||+|||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD 172 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCC
Confidence 1111 122233333334445567766654 45555556 4899999999999999
Q ss_pred hHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 504 PLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 504 p~eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
+.....+.. ++..+. +.|.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 173 ~~~~~~l~~-~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 173 LAHQHHVLR-LARQLAHERGLA-VIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 977777655 555565 66887 99999998876 58999999999998754
No 117
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.78 E-value=7.8e-19 Score=179.20 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=97.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------ccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY--A 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~--~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..|. +++.... .
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4688999999 88999999999999999999999765322 1121 1111000 0
Q ss_pred ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 449 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 449 ~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
...+.+ .++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 001111 12233344434444455677555 56666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
...+.. +++.+.+.|.| +|++||+.++..+|+++.
T Consensus 170 ~~~l~~-~l~~~~~~~~t-ii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 170 RDEVLD-LLLELNDEGKT-IIIVTHDPEVAKQADRVI 204 (206)
T ss_pred HHHHHH-HHHHHHhcCCE-EEEEeCCHHHHhhcCEEE
Confidence 766654 66666666787 899999998877776543
No 118
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=6.4e-19 Score=177.31 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=100.8
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-ccccc----------ccccchhhH------Hhhhc
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSE----------YAKVPWFDS------VFADI 460 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-vpa~~----------~~~i~~~~~------i~~~i 460 (798)
+..+++++ ..|++++|+||||||||||||+|+++.... .|.. +.... ...+.+..+ ++..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 78888888 888999999999999999999998764332 2321 11000 011222211 23334
Q ss_pred CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hh
Q 003747 461 GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TL 538 (798)
Q Consensus 461 g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~ 538 (798)
...+++.... .+|+++ +++..+.+++.+|++||||||++|+|+.....+.. ++..+.+.|.| +|++||+.+.. .+
T Consensus 94 t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~t-iii~sh~~~~~~~~ 170 (182)
T cd03215 94 SVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR-LIRELADAGKA-VLLISSELDELLGL 170 (182)
T ss_pred cHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHh
Confidence 4444443321 166555 55666677889999999999999999977776654 66666666787 99999997654 68
Q ss_pred hccccceeeeE
Q 003747 539 KYSNDFFENAC 549 (798)
Q Consensus 539 a~~~~~l~ng~ 549 (798)
|+++..+.+|.
T Consensus 171 ~d~v~~l~~G~ 181 (182)
T cd03215 171 CDRILVMYEGR 181 (182)
T ss_pred CCEEEEecCCc
Confidence 99888887775
No 119
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=9.8e-19 Score=183.13 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=106.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i~ 451 (798)
..++.+++|+ ..|++++|+||||+|||||||+|++.... ..|. ++|.... ....
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 4689999999 88999999999999999999999765321 1121 1111000 0001
Q ss_pred hhh-----------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 452 WFD-----------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 452 ~~~-----------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
+.+ .++..++...........+|+++ +++..+.+++.+|++|||||||+|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 111 11223344333444455677655 556666678999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..+.
T Consensus 174 LD~~~~~~l~~-~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 174 MTDEETEKTAE-LLKSLAG-KHS-VVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCE-EEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence 99977766654 6666655 677 99999998876 589999999999987543
No 120
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=1.3e-18 Score=180.42 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=106.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh----hccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----MAKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~----~aq~G~-----------------------~vpa~~~~ 448 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++.. .+..|. ++|.....
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 4689999999 8899999999999999999999987751 222221 11210000
Q ss_pred -ccchhhH----------------------HhhhcCchhhHhhh--hhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 449 -KVPWFDS----------------------VFADIGDEQSLSQS--LSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 449 -~i~~~~~----------------------i~~~ig~~~si~~~--lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
...+.+. ++..+|..+..... ...+|++++ ++..+.+++.+|++|||||||+||
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0011111 12223343333333 267776654 556666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+. .++..+.+. .| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 173 D~~~~~~l~-~~l~~~~~~-~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 222 (227)
T cd03260 173 DPISTAKIE-ELIAELKKE-YT-IVIVTHNMQQAARVADRTAFLLNGRLVEFG 222 (227)
T ss_pred CHHHHHHHH-HHHHHHhhC-cE-EEEEeccHHHHHHhCCEEEEEeCCEEEEec
Confidence 997766665 466666665 66 99999998875 589999999999987543
No 121
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-18 Score=178.82 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=100.3
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhhH----
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS---- 455 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~~---- 455 (798)
+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 67777 788999999999999999999997653211 11 122210000 0011111
Q ss_pred -----------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Q 003747 456 -----------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517 (798)
Q Consensus 456 -----------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~ 517 (798)
++..++...........+|++++ ++..+.+++.+|+++||||||+|+|+.....+.. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~ 173 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLD 173 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 22233333333444456776654 5566667789999999999999999977777655 5555
Q ss_pred HHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 518 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 518 L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
+.. .|.| ||++||+.+.. .+|+++..+.+|.+..
T Consensus 174 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMT-VLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCE-EEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 654 5787 99999998876 6899999999998864
No 122
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.8e-19 Score=188.60 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=108.0
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc-c--
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A-- 448 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~-~-- 448 (798)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 588999999 889999999999999999999997653221 12 11221000 0
Q ss_pred ccchhhH---------------------HhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 449 KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 449 ~i~~~~~---------------------i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+.+. ++..++.. +........+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0011111 12223332 22234445567554 5566666779999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+. .++..+.+.|.| ||++|||+++. .+|+++..+.+|.+.+++
T Consensus 179 ~~~~l~-~~l~~l~~~g~t-il~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 179 ARIEMM-QLFESIHQSGQT-VVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 666665 567777777887 99999998876 689999999999998765
No 123
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=181.99 Aligned_cols=155 Identities=18% Similarity=0.125 Sum_probs=112.0
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc----ccccccccc----ccc-------------------
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS----GLHILSSEY----AKV------------------- 450 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~----G~~vpa~~~----~~i------------------- 450 (798)
...|++|+ +.|.+++++||||+||||+||++.++..+... +.+.|-... ..+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 56788888 88999999999999999999999766544321 112232100 000
Q ss_pred -chh---------------hHHhhhcCchhhHhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 451 -PWF---------------DSVFADIGDEQSLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 451 -~~~---------------~~i~~~ig~~~si~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
.+. +.+...++++..+......+| |+..+...+++++++|.+|+|||||-|||......+...
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 000 001122344445555666677 455566666778999999999999999999888888776
Q ss_pred HHHHHHhcCCcEEEEEecch-hHHhhhccccceeeeEEEEec
Q 003747 514 LLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 514 ll~~L~~~g~t~VIitTHd~-el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.++-..+++| |++|||++ ++..+|+++..+.+|.+.||+
T Consensus 199 lke~n~~~~aT-VllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 199 LKEYNEERQAT-VLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHhhCce-EEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 66666677888 99999985 677899999999999999985
No 124
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.78 E-value=1.2e-18 Score=182.20 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=105.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhccccc----------------------cccccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEYAKV-- 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~----------------------~vpa~~~~~i-- 450 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++. +.+..|. ++|. ....+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q-~~~~~~~ 91 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQ-YPEEIPG 91 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeec-cccccCC
Confidence 4688999999 889999999999999999999998763 1222221 1121 00000
Q ss_pred -chh----------------------------hHHhhhcCchh-hHhhhhh-hhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 451 -PWF----------------------------DSVFADIGDEQ-SLSQSLS-TFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 451 -~~~----------------------------~~i~~~ig~~~-si~~~ls-tfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
... ..++..++..+ ....... .+|+++ +++..+.+++.+|++||||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 000 01112223321 1223333 377655 556666678999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~-a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+. .++..+.+.|.| ||++||+.+... + |+++..+.+|++..++
T Consensus 172 t~~LD~~~~~~l~-~~l~~~~~~~~t-vi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 172 DSGLDIDALKIVA-EGINRLREPDRS-FLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHHCCcE-EEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 9999997766665 466667767887 999999988875 5 7889899999987654
No 125
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.78 E-value=2e-18 Score=182.20 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=106.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------------------c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------------------H 441 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------------------~ 441 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. +
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID-EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 4688999999 889999999999999999999997653211 111 1
Q ss_pred ccccccc--ccchhhH----------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEe
Q 003747 442 ILSSEYA--KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 496 (798)
Q Consensus 442 vpa~~~~--~i~~~~~----------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLD 496 (798)
++..... ...+.+. ++..+|...........+|+++ +++..+.+++.+|++||||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1110000 0011111 1223344444444555677655 5666667789999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 497 EIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 497 EP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|||+|||+.....+.. ++..+.+ .|.| +|++||+.+.. .+++++..+.+|.+...
T Consensus 172 EP~~~LD~~~~~~l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 172 EVTSALDPELVGEVLN-VIRRLASEHDLT-MLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999977666654 5555555 4787 99999998876 68999999999998754
No 126
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.78 E-value=1.4e-18 Score=179.86 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=103.4
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc-c---
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY-A--- 448 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~-~--- 448 (798)
.++.+++++ ..|++++|+|||||||||||++|+++... ..| .++|.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 688999999 88999999999999999999999765321 111 11221100 0
Q ss_pred ccchhhH-----------------------HhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 449 KVPWFDS-----------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 449 ~i~~~~~-----------------------i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
...+.+. ++..++.. .........+|+++ +++..+.+++.+|++|||||||+|||
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 0111111 11223332 22333445567655 55666667899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHh-hhccccceeeeEEEE
Q 003747 504 PLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-LKYSNDFFENACMEF 552 (798)
Q Consensus 504 p~eg~al~~all~~L~~~-g~t~VIitTHd~el~~-~a~~~~~l~ng~v~f 552 (798)
+.....+.. ++..+.+. |.| ||++||+.+... +|+++..+.+|.+..
T Consensus 178 ~~~~~~l~~-~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQILD-LLKKLQEELGLT-LLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 977666655 55556554 787 999999988775 899999999998754
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=181.84 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=107.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------------ccccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------------LHILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------------~~vpa~~~~ 448 (798)
+.++.+++++ ..|++++|+||||||||||||+|+++... ..| .++|.....
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 4689999999 88999999999999999999999765321 112 112210000
Q ss_pred --ccchhhHH----------------------hhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 449 --KVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 449 --~i~~~~~i----------------------~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
...+.+.+ +..+|....+......+|+++ +++..+.+++.+|+++||||||+|+|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 01111111 222334333444455677655 55666667789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+. .++..+.+.|.| +|++||+.+.. .+++++..+.+|.+..++
T Consensus 174 ~~~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 174 PEITAQIV-SIIRELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 96666664 466667767887 99999998876 589999999999987653
No 128
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=187.83 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=108.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~--- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... | .++|....
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS-GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 4689999999 8999999999999999999999976532211 1 12222100
Q ss_pred cccchhh---------------------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 448 AKVPWFD---------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 448 ~~i~~~~---------------------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
....+.+ .++..+++. .........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 0001111 122234443 22344556677655 456666677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. ++..+.+ .|.| ||++|||.+.. .+|+++..+.+|.+..++
T Consensus 179 ~~~~~l~~-~L~~l~~~~g~t-viiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 179 KGRKEMME-MFYKLHKEKGLT-TVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 77776654 6666665 4887 99999998876 689999999999998765
No 129
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.78 E-value=1.6e-18 Score=183.99 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=107.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--ccc--------------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG--------------------------LHILSSE 446 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--q~G--------------------------~~vpa~~ 446 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... ..| .++|...
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 35688999999 889999999999999999999998764321 111 1122100
Q ss_pred c--cccchhhH-----------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEE
Q 003747 447 Y--AKVPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVL 494 (798)
Q Consensus 447 ~--~~i~~~~~-----------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLL 494 (798)
. ....+.+. ++..++..+.+......+|+++ +++..+.+++.+|+|||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 00011111 1222344434444555677555 55666667899999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhH-HhhhccccceeeeEEEEec
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd~ 554 (798)
|||||+|||+.....+.. ++..+.+ .|.| ||++||+.+. ..+|+++..+.+|.+..++
T Consensus 176 lDEPt~~LD~~~~~~l~~-~l~~~~~~~g~t-vii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 176 ADEPIASLDPESARIVMD-TLRDINQNDGIT-VVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred ecCccccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999977777654 6666654 4777 9999999986 5789999999999886543
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=8e-19 Score=175.85 Aligned_cols=148 Identities=19% Similarity=0.173 Sum_probs=102.3
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccc---------ccccchhhHH--hhhcCchhh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------YAKVPWFDSV--FADIGDEQS 465 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~---------~~~i~~~~~i--~~~ig~~~s 465 (798)
.+..+++++ ..|++++|+||||||||||||+|+++... ..|...-... ...+++..+- +......++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 94 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN 94 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHh
Confidence 588899999 88999999999999999999999776432 2342211000 0011111110 001223333
Q ss_pred HhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 466 LSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 466 i~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
+ ...+|++ .+++..+.+++.+|+++||||||+|+|+.....+.. ++..+. .+.| +|++||+.++...++++..
T Consensus 95 i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~-~~~t-ii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 95 L---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVL-KDKT-LIWITHHLTGIEHMDKILF 168 (178)
T ss_pred h---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHc-CCCE-EEEEecCHHHHHhCCEEEE
Confidence 3 4556654 456666677899999999999999999977666654 555554 4777 9999999988888888888
Q ss_pred eeeeEEEE
Q 003747 545 FENACMEF 552 (798)
Q Consensus 545 l~ng~v~f 552 (798)
+.+|.+..
T Consensus 169 l~~g~i~~ 176 (178)
T cd03247 169 LENGKIIM 176 (178)
T ss_pred EECCEEEe
Confidence 88888764
No 131
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.78 E-value=1.4e-18 Score=193.17 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=109.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-ccc-------------------cccccccc---ccch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-~G~-------------------~vpa~~~~---~i~~ 452 (798)
..++++++|+ ..|++++|+||||||||||||+|+++..... .|. +++. ... .+.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ-~~~l~p~~tv 96 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ-NYALFPHLKV 96 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC-CcccCCCCcH
Confidence 4689999999 8899999999999999999999987643322 021 1111 000 0011
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..+++.+........+|+++ ++++.+.+++.+|++||||||++|||+.....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 11 12333444444455556677655 566777788999999999999999999777777
Q ss_pred HHHHHHHHHhc--CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAES--GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~--g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.. .+..+.+. |.| +|++|||.+.+ .+|+++..+.+|.+...+
T Consensus 177 ~~-~l~~l~~~~~g~t-il~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 177 RE-EIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HH-HHHHHHHhCCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 55 55556654 677 99999998775 689999999999997654
No 132
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.78 E-value=1.4e-18 Score=192.52 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=109.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------ccccccccc---cchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYAK---VPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~~---i~~~ 453 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... |. +++. .... +.+.
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~-G~I~i~g~~~~~~~~~~r~ig~v~Q-~~~lfp~~tv~ 94 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA-GTIYQGGRDITRLPPQKRDYGIVFQ-SYALFPNLTVA 94 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCcHH
Confidence 4578889998 8899999999999999999999987643211 11 1111 0000 1111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+.++..+++.+........+|+++ ++++.+.+++.+|+++|||||++|||+.....+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR 174 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 122334455555555566777655 5667777889999999999999999998777776
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.+...+.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 175 ~~L~~l~~~~~~t-vi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 175 TEIRQLQRRLGVT-TIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5444433445887 99999998865 689999999999997544
No 133
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=1.6e-18 Score=180.16 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=104.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------ccccccccc--ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEYA--KVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~~--~i~ 451 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4688999999 889999999999999999999997653221 11 122221000 001
Q ss_pred hhhHH------------------hhhcC-chhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 452 WFDSV------------------FADIG-DEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 452 ~~~~i------------------~~~ig-~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+.+.+ +..++ ...........+|+++ +++..+.+++.+|+++||||||+|||+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 11111 11111 1122233344567555 5566666789999999999999999997777765
Q ss_pred HHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEe
Q 003747 512 MSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 553 (798)
Q Consensus 512 ~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd 553 (798)
. ++..+.+ .|.| +|++||+.+... +|+++..+.+|.+...
T Consensus 172 ~-~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 172 R-VIRRLRAEGGMA-ILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred H-HHHHHHHcCCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4 5556665 4777 999999988775 8999999999988754
No 134
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.5e-18 Score=178.55 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=100.3
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------cccccccc--ccchh
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYA--KVPWF 453 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~~--~i~~~ 453 (798)
+++|+ .. ++++|+|||||||||||++|+++.... .|. ++|..... ...+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 77777 67 999999999999999999997653221 121 11210000 00111
Q ss_pred h-------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 454 D-------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 454 ~-------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|||+.....+..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~- 172 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP- 172 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 1 12233444444444556677655 45666667899999999999999999977666654
Q ss_pred HHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 514 LLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 514 ll~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..
T Consensus 173 ~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 173 ELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHcCcE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 66566554 787 99999998766 6899999999998864
No 135
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.6e-18 Score=191.88 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=109.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccccc---ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~---~i~~ 452 (798)
+..++.+++++ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~vfQ-~~~lfp~~tv 95 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE-GQIFIDGEDVTHRSIQQRDICMVFQ-SYALFPHMSL 95 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCCH
Confidence 34678899999 8899999999999999999999977643221 11 1111 000 0111
Q ss_pred hhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.++ ++..++...........+|+++ +|++.+.+++.+|++||||||++|||+.....+
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 2223344443444456677654 566777788999999999999999999887777
Q ss_pred HHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.. .+..+.+ .|.| +|++|||.+.+ .+|+++..+.+|.+...+
T Consensus 176 ~~-~l~~l~~~~g~t-ii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 176 RE-KIRELQQQFNIT-SLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HH-HHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 65 5555554 5887 99999998776 699999999999997654
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.3e-18 Score=180.55 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=106.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc--ccch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~--~i~~ 452 (798)
..++.+++++ ..|++++|+||||||||||||+|+++... ..| .++|..... ...+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 4588999999 88999999999999999999999765321 111 122211000 0111
Q ss_pred hh---------------------HHhhhcCchh--hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 453 FD---------------------SVFADIGDEQ--SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~--si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+ .++..++... ........+|+++ +++..+.+++.+|++|||||||+|+|+....
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 11 1233344442 3445556777665 4566666789999999999999999996666
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.+. .++..+.+. |.+ ||++||+.+.. .+|+++..+.+|++..+
T Consensus 173 ~l~-~~L~~~~~~~g~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 173 QLQ-EEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 665 466666654 787 99999998754 68999999999998654
No 137
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-18 Score=182.48 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~--~i~ 451 (798)
+..++.+++++ ..|++++|+||||||||||||+|+++... ..| .++|..... .+.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 35689999999 88999999999999999999999765321 111 122211000 011
Q ss_pred hhhH-------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~-------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
..+. .+..++...........+|+++ +++..+.+++.+|++|||||||+|+|+.
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111 1222333333344445677655 5666677789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+...|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 173 ~~~~l~~-~l~~l~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 173 HQVELMR-LMRELNTQGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred HHHHHHH-HHHHHHHCCCE-EEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 7666654 55666666887 99999998865 68999999999998754
No 138
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.77 E-value=1.9e-18 Score=192.78 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=109.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccccc---ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~---~i~~ 452 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~vfQ-~~~lfp~ltv 103 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS-GRIMLDGQDITHVPAENRHVNTVFQ-SYALFPHMTV 103 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHCCEEEEec-CcccCCCCCH
Confidence 34678889998 8899999999999999999999987543211 11 1111 000 0111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..+++.+.......++|+++ ++++.+.+++.+|++||||||++|||+.....+
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 11 12333445455555556777654 566667778999999999999999999777776
Q ss_pred HHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.. .+..+. +.|.| +|++|||.+.+ .+++++..+.+|++...+
T Consensus 184 ~~-~L~~l~~~~g~t-iI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 184 QN-ELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 55 555555 45887 99999998765 699999999999997543
No 139
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.77 E-value=1.6e-18 Score=192.20 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=109.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------ccccccccc---cchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYAK---VPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~~---i~~~ 453 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. +++. .... +.+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~~~~r~i~~v~Q-~~~l~p~~tv~ 92 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARDRKVGFVFQ-HYALFRHMTVF 92 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHCCEEEEec-CcccCCCCcHH
Confidence 4689999999 889999999999999999999997653221 111 1111 0000 0111
Q ss_pred h-------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 454 D-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 454 ~-------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+ .++..+++.+........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 1 12333444444455556677655 556666778999999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+. |.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 173 ~~l~~-~L~~l~~~~g~t-ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 173 KELRR-WLRQLHEELKFT-SVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 77755 55555544 787 99999998775 689999999999997654
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.2e-18 Score=184.12 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=107.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc-c--cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY-A--KV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~-~--~i 450 (798)
++.++.+++++ ..|++++|+|||||||||||++|+++.... .| .++|.... . ..
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 35689999999 889999999999999999999997653221 11 12221100 0 01
Q ss_pred chhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+.+. ++..++....+......+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111 1222334333444455677655 5566666789999999999999999996666
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.+. .++..+.+. +.| ||++||+.+...+|+++..+.+|.+...+
T Consensus 180 ~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 180 EIK-KIMVDLRKTRKKT-LISITHDMDEAILADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHH-HHHHHHHHhcCcE-EEEEEechhHHhhCCEEEEEECCEEEEec
Confidence 665 466666655 476 99999998877789999999999987543
No 141
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.77 E-value=2.4e-18 Score=182.08 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=105.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------ccccccccc--cc--ch---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA--KV--PW--------- 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------~~vpa~~~~--~i--~~--------- 452 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .+ .+
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 4689999999 889999999999999999999997654221 12 122321100 00 00
Q ss_pred -----hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcE
Q 003747 453 -----FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLL 525 (798)
Q Consensus 453 -----~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~ 525 (798)
+..++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++..+.+. |.|
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~g~t- 173 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD-LIDQLRRELDCA- 173 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHhcCCE-
Confidence 1122344566666666677788665 45666667789999999999999999977777654 55556554 787
Q ss_pred EEEEecchhHH-hhhccccceeeeEEEE
Q 003747 526 TIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 526 VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
||++||+.+.. .+|+++..+.+ .+..
T Consensus 174 iiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 174 VLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred EEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 99999998876 68888877754 4543
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=184.53 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=108.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc---cccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~---~~i~ 451 (798)
..++.+++|+ ..|++++|+||||||||||+|+|+++.... .| .++|.... ....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 4589999999 889999999999999999999997653211 11 11221100 0011
Q ss_pred hhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1111 1222344444444455677655 55666677899999999999999999977666
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 176 l~-~~l~~l~~~~g~t-vli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 176 LI-DFLNDLPETYGMT-VIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 65 466666654 787 99999998876 699999999999998654
No 143
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.77 E-value=1.8e-18 Score=183.00 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=108.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~--~i~ 451 (798)
+..++.+++|+ ..|++++|+||||+|||||||+|+++.... .| .++|..... ...
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 35689999999 889999999999999999999997653211 11 122221000 011
Q ss_pred hhhH-------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~-------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+. .+..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1111 1222333333334445567655 5566666778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+.+++
T Consensus 172 ~~~~l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 219 (256)
T TIGR03873 172 AQLETL-ALVRELAATGVT-VVAALHDLNLAASYCDHVVVLDGGRVVAAG 219 (256)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCEEEec
Confidence 766665 466677766887 99999998887 689999999999987654
No 144
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=190.44 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=119.1
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc--------cccccccccc-------------hhh--
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH--------ILSSEYAKVP-------------WFD-- 454 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~--------vpa~~~~~i~-------------~~~-- 454 (798)
+..+++++ .+|++++|+||||||||||||+|+++.-....-.+ +|. ....++ +++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hHCCEEEEeCCccccCCCcHHHHh
Confidence 88999999 89999999999999999999999887543321111 111 011111 111
Q ss_pred -------------------HHhhhcCchhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 455 -------------------SVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 455 -------------------~i~~~ig~~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
.+...+++.+.+....+.+||+ +||++...+++.+|+++|||||+|+||+.-...+...+
T Consensus 97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei 176 (338)
T COG3839 97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEI 176 (338)
T ss_pred hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHH
Confidence 1223345555555556667765 55777777889999999999999999998877776655
Q ss_pred HHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEecccceeeEEeecCCCCCchHHHHHHHcCCChH
Q 003747 515 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGI 585 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ 585 (798)
.+...+.|.| +|++|||...+ .+++++..+.+|.+.--+... ..|. +.-...+|.-.|.|+.
T Consensus 177 ~~lh~~l~~T-~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~-ely~-------~P~n~fVA~FiG~p~m 239 (338)
T COG3839 177 KKLHERLGTT-TIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL-ELYE-------RPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHHHhcCCc-EEEEcCCHHHHHhhCCEEEEEeCCeeeecCChH-HHhh-------CccchhhhhhcCChhh
Confidence 5544455887 99999996555 699999888888886322211 1221 2234456777776644
No 145
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=183.64 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=115.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccc----------------------cc---ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS----------------------EY---AKV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~----------------------~~---~~i 450 (798)
..+.+|++|+ +.|++++|+|++|+|||||+|+|.++..+...-.++... +. +.-
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 4578899999 999999999999999999999997654333211111100 00 000
Q ss_pred ch---------------------hhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PW---------------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~---------------------~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+ +..++...|..+......+.+||+++ |+..+.+++.+|++||+|||||+|||....
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 01 12235556777777778888887665 555666779999999999999999999999
Q ss_pred HHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.. ++..+. +.|.| |+++||.+++. .+|+++..+.+|.+...+
T Consensus 179 sIL~-LL~~In~~lglT-IvlITHEm~Vvk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 179 SILE-LLKDINRELGLT-IVLITHEMEVVKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred HHHH-HHHHHHHHcCCE-EEEEechHHHHHHHhhhheEeeCCEEEEec
Confidence 9876 555554 56887 99999999988 499999999999998654
No 146
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-18 Score=185.52 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------cccccccc---cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~---~~ 449 (798)
..++.+++|+ ..|++++|+||||+|||||+|+|+++.... .| .++|.... ..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 5689999999 889999999999999999999997653211 11 12222110 00
Q ss_pred cchhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+. .+..+|...........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 111111 1223333333344455677655 456666677899999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAES-GSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~-g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+. |.| ||++||+.+... +|+++..+.+|.+.+++
T Consensus 178 ~~l~~-~l~~l~~~~g~t-illvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 178 SEIMK-LLVEMQKELGLT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 76654 55666654 787 999999988874 89999999999997654
No 147
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.7e-18 Score=186.52 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=108.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc-cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~-~~ 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... | .++|.... ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT-GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 4689999999 8899999999999999999999976532211 1 12222100 00
Q ss_pred c--chhh---------------------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 450 V--PWFD---------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 450 i--~~~~---------------------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+ .+.+ .++..+|.. +........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 0 1111 122334443 33344556677655 455666677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+. .++..+.. .|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 179 ~~~~~l~-~~l~~l~~~~g~t-vl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 179 QSKRQVM-RLLKSLQTDENKT-IILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHH-HHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7766664 56666665 4787 99999998876 689999999999988654
No 148
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.77 E-value=2.5e-18 Score=181.98 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=107.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------------------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------------- 440 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------------------- 440 (798)
++.++.+++|+ ..|++++|+||||+||||||++|++..... .|.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 35689999999 899999999999999999999997653211 121
Q ss_pred cccccccc--ccchhhHH----------------------hhhcCchhhH-hhhhhhhhHHH-HHHHHHHHhCCCCeEEE
Q 003747 441 HILSSEYA--KVPWFDSV----------------------FADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVL 494 (798)
Q Consensus 441 ~vpa~~~~--~i~~~~~i----------------------~~~ig~~~si-~~~lstfs~~~-~ri~~il~~a~~psLLL 494 (798)
++|..... ...+.+.+ +..+|..... ......+|+++ +++..+.+++.+|+++|
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11110000 01111211 2223333222 33445677655 45666667799999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEe
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 553 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd 553 (798)
|||||+|||+.....+. .++..+.+.|.| ||++||+.+... +|+++..+.+|++..+
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~l~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 176 FDEPTSALDPELVGEVL-RIMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999997777665 466677777887 999999988775 7999999999998754
No 149
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.77 E-value=1.7e-18 Score=171.47 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=111.3
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc---------ccccc-cccchhhHHhhhcCchhhH
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------LSSEY-AKVPWFDSVFADIGDEQSL 466 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v---------pa~~~-~~i~~~~~i~~~ig~~~si 466 (798)
..+..|++. ..|++++|+||+||||||||++|+++..+.+....+ |+... +.+..-.++|+++++.+++
T Consensus 13 ~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNi 92 (231)
T COG3840 13 HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNI 92 (231)
T ss_pred cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhh
Confidence 346666666 788999999999999999999998877665532222 22111 1111113455655555554
Q ss_pred hhh-------------------------------hhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 467 SQS-------------------------------LSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 467 ~~~-------------------------------lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
..+ ..++|| +.+|++.+..++.+.+++||||||+.|||.-...+...+
T Consensus 93 gLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv 172 (231)
T COG3840 93 GLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV 172 (231)
T ss_pred cccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHH
Confidence 333 234554 556777788889999999999999999998877776544
Q ss_pred HHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEEEecc
Q 003747 515 LEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd~~ 555 (798)
.+...+++.| ++++||..+- ..++++++.+.+|+|...+.
T Consensus 173 ~~l~~E~~~T-llmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 173 SQLCDERKMT-LLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHhhCCE-EEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 4444466787 8999998655 46999999999999998764
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=184.93 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=109.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc--cc---------------------ccccccc---cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GL---------------------HILSSEY---AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~--G~---------------------~vpa~~~---~~ 449 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++...... |. ++|.... ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 3588999999 88999999999999999999999876533220 21 1121000 00
Q ss_pred cchhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 011111 1223344443444455677655 566666678999999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.. .|.| ||++||+.+...+|+++..+.+|.+..++
T Consensus 180 ~~l~~-~l~~l~~~~g~t-vli~tH~~~~~~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 180 EQILK-LIRKLKKKNNLT-VISITHDIDEANMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 77655 5666665 4787 99999999888889999999999988654
No 151
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-18 Score=184.85 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=109.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------ccccccccc-cc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEYA-KV-- 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~~-~i-- 450 (798)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|..... .+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 4699999999 889999999999999999999997653211 11 122211000 00
Q ss_pred chh---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~~---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+. ..++..+|..+........+|++++ ++..+.+++.+|++|||||||+|||+....
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 011 1122334444445555667776654 556666779999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.+. .++..+.+ .|.| ||++||+.+....|+++..+.+|.+..++
T Consensus 182 ~l~-~~l~~l~~~~g~t-illvtH~~~~~~~~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 182 EVV-NTIKELNKKYGIT-IILITHYMEEAVEADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHH-HHHHHHHHhcCCE-EEEEecChHHHhcCCEEEEEECCEEEEec
Confidence 775 46666655 4887 99999999888779999999999987654
No 152
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=180.25 Aligned_cols=153 Identities=15% Similarity=0.202 Sum_probs=106.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|. ....+ .+
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q-~~~~~~~tv 93 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT-EGSILIDGVDIKTIDVIDLRRKIGMVFQ-QPHLFEGTV 93 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcChHHhhhcEEEEec-CchhchhhH
Confidence 4688999999 889999999999999999999997653211 12 11221 10000 00
Q ss_pred h-----------------hHHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 453 F-----------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 453 ~-----------------~~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
. ..++..++.. +........+|+++ +++..+.+++.+|++|||||||+|+|+.....+. .
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~ 172 (241)
T PRK14250 94 KDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE-E 172 (241)
T ss_pred HHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-H
Confidence 1 1123334443 23344555677555 5566666789999999999999999996666654 4
Q ss_pred HHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 514 LLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 514 ll~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 173 ~l~~~~~~~g~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 173 LIVKLKNKMNLT-VIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred HHHHHHHhCCCE-EEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 6666665 4887 99999998875 58999999999998754
No 153
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=2.2e-18 Score=183.89 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=106.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------cccccc--ccccchhhHH--------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSE--YAKVPWFDSV-------- 456 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------~vpa~~--~~~i~~~~~i-------- 456 (798)
...++.+++|+ ..|++++|+|||||||||||++|+++..+.. |. +++... ...+.+.+.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV-GKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc-eEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 35688899999 8899999999999999999999987643221 21 111000 0011111111
Q ss_pred -------------hhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 003747 457 -------------FADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522 (798)
Q Consensus 457 -------------~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g 522 (798)
+..++..+.+......+|+++ +++..+.+++.+|++||||||++|+|+.....+.. ++..+.+.|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQN 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCC
Confidence 122233334444556677655 56666777889999999999999999977666655 555666678
Q ss_pred CcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 523 SLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 523 ~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
.| +|++||+.+.. .+|+++..+.+|++..
T Consensus 194 ~t-iIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 194 KT-IFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CE-EEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 87 99999998775 5899998998998864
No 154
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.5e-18 Score=183.03 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=107.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~--~i~ 451 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA-HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 34689999999 889999999999999999999997653211 11 111210000 001
Q ss_pred hhh-------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFD-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~-------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 111 11222344333444555677655 5666667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 178 ~~~~l~~-~L~~l~~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 178 HQIDLLE-LLSELNREKGYT-LAAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 7777655 5556665 4777 99999998755 799999999999987653
No 155
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-18 Score=183.67 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=107.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc---c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV---P 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i---~ 451 (798)
..++.+++++ ..|++++|+||||||||||+|+|+++.... .| .++|......+ .
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 3588999999 889999999999999999999997653211 11 12221100000 0
Q ss_pred hhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 452 WFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 452 ~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
+.+ .++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 180 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 001 11223333333444445677655 56666667899999999999999999977777
Q ss_pred HHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.. ++..+.+ .|.| ||++||+.+....|+++..+.+|.+..++
T Consensus 181 l~~-~L~~~~~~~~~t-iiivtH~~~~~~~~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 181 LLD-LVRKVKSEHNIT-IISITHDLSEAMEADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHH-HHHHHHHhcCCE-EEEEecCchHHhcCCEEEEEECCEEEEec
Confidence 755 5555655 4777 99999998887779999999999997654
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.77 E-value=1.8e-18 Score=178.46 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=102.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~--i~~ 452 (798)
..++.+++++ ..|++++|+|||||||||||++|+++.... .| .++|. .... ..+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCeEEECCEEhHHCCHHHHHhhEEEeCC-CCccccchH
Confidence 4588899998 889999999999999999999997653211 11 12221 1000 011
Q ss_pred hhH---------------HhhhcCchhhHhhh-----------hhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDS---------------VFADIGDEQSLSQS-----------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~---------------i~~~ig~~~si~~~-----------lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+. .+..++..+.+... ...+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 95 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~ 174 (220)
T cd03245 95 RDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174 (220)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 111 12222333322221 23677655 4566666778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
....+.. ++..+.. +.| ||++||+.++..+|+++..+.+|.+..
T Consensus 175 ~~~~l~~-~l~~~~~-~~t-ii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 175 SEERLKE-RLRQLLG-DKT-LIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHHH-HHHHhcC-CCE-EEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 7777755 5555555 366 999999998888999999999988754
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.9e-18 Score=183.87 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=107.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc--cccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~--~~i~ 451 (798)
++.++.+++|+ ..|++++|+||||||||||+|+|+++.... .| .++|.... ....
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 35689999999 889999999999999999999997653211 11 12221000 0001
Q ss_pred hhhH-------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~-------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+. ++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111 2223333333344445677655 5666666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+.. .|.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 182 ~~~~~~~-~l~~l~~~~~~t-iii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 182 HQVDVLA-LVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 6666654 6666655 4787 99999998876 68999999999998754
No 158
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-18 Score=184.62 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=106.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------cccccccc-c-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A- 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~-~- 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 3588999999 889999999999999999999997653211 11 12222100 0
Q ss_pred -ccchhhH---------------------HhhhcCchh-hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 449 -KVPWFDS---------------------VFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 449 -~i~~~~~---------------------i~~~ig~~~-si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
...+.+. ++..++... ........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 0011111 112233331 2334445677655 456666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 179 ~~~~~l~~-~l~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 179 KGRKELMT-LFKKLHQSGMT-IVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHH-HHHHHHHCCCE-EEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 77666654 66666666787 99999998876 589999999999987643
No 159
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.77 E-value=2.4e-18 Score=179.28 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=103.1
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc---cccc-------------------ccccccc----cccch
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------HILSSEY----AKVPW 452 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a---q~G~-------------------~vpa~~~----~~i~~ 452 (798)
..+++++ ..|++++|+||||||||||||+|+++.... ..|. ++|.... ..+..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4577777 788999999999999999999998775431 2231 1111000 00010
Q ss_pred hh---------------------HHhhhcCch---hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 453 FD---------------------SVFADIGDE---QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~---~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
.+ .++..++.. .........+|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 01 111222232 22334455677655 556666677899999999999999999776
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+ .|.| ||++||+.+.. .+++++..+.+|.+..+.
T Consensus 162 ~~l~~-~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 162 ARVLK-LLRELRQLFGTG-ILLITHDLGVVARIADEVAVMDDGRIVERG 208 (230)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 66654 5556655 4777 99999998776 589999999999987653
No 160
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.1e-18 Score=173.90 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=94.7
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-ccccc---------cccchhhHHhhhcCchhhH
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSEY---------AKVPWFDSVFADIGDEQSL 466 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v-pa~~~---------~~i~~~~~i~~~ig~~~si 466 (798)
.+..+++|+ ..|++++|+||||+|||||||+|+++.... .|... ..... ..+++..+-...+. .++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--chH
Confidence 578888888 889999999999999999999997764432 24221 11000 01111111000010 122
Q ss_pred hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 467 SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 467 ~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
..++ +|+++ +++..+.+++.+|++|||||||+|+|+.....+.. ++..+.+ +.| +|++||+.+....|+++..+
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT-VIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE-EEEEecCHHHHHhCCEEEEE
Confidence 2222 66554 55666667789999999999999999977776654 5555654 676 99999998887667777766
Q ss_pred eee
Q 003747 546 ENA 548 (798)
Q Consensus 546 ~ng 548 (798)
.+|
T Consensus 168 ~~g 170 (171)
T cd03228 168 DDG 170 (171)
T ss_pred cCC
Confidence 655
No 161
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.77 E-value=2.8e-18 Score=181.78 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=107.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------------cccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------LHILSS 445 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------------~~vpa~ 445 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 4688999998 889999999999999999999997653211 11 122221
Q ss_pred ccc----ccchh----------------------hHHhhhcCchh-hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEec
Q 003747 446 EYA----KVPWF----------------------DSVFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 497 (798)
Q Consensus 446 ~~~----~i~~~----------------------~~i~~~ig~~~-si~~~lstfs~~~-~ri~~il~~a~~psLLLLDE 497 (798)
... .+... ..++..++... .+......+|+++ +++..+.+++.+|++|||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 100 00000 11223344432 3445556677655 56666667899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 498 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
||+|||+.....+.. ++..+.. .|.| ||++||+.+... +|+++..+.+|++...+
T Consensus 178 Pt~~LD~~~~~~l~~-~l~~~~~~~~~t-ii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 178 PTGGLDVSVQARLLD-LLRGLVRELGLA-VVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999977666655 5555554 4777 999999998875 89999999999997643
No 162
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.77 E-value=2.8e-18 Score=182.62 Aligned_cols=155 Identities=13% Similarity=0.135 Sum_probs=106.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc----
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~---- 447 (798)
..++++++|+ ..|++++|+||||||||||||+|+++... ..| .++|....
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 5689999999 89999999999999999999999765321 111 12222100
Q ss_pred cccchhh----------------------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 448 AKVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 448 ~~i~~~~----------------------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
....+.+ .++..++.. .........+|+++ +++..+.+++.+|++|||||||+|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0011111 122333442 22344455677655 45666667799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
+.....+.. ++..+.+ .|.| ||++||+.+... +|+++..+.+|.+...+
T Consensus 183 ~~~~~~l~~-~l~~~~~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 183 MVLQAVILE-LLRKLQQAFGTA-YLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 977666655 5555554 4787 999999988874 89999999999987543
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=3.5e-18 Score=175.91 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=102.8
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhhH--
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS-- 455 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~~-- 455 (798)
..+++++ ..|++++|+||||||||||+|+|+++.... .| .++|..... ...+.++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 4577777 788999999999999999999997653211 11 122211000 0111111
Q ss_pred -------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 456 -------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 456 -------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA-LV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HH
Confidence 2233344444444445677655 45666667899999999999999999977776654 55
Q ss_pred HHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 516 EAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 516 ~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 172 ~~~~~~~~~t-ii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 172 KQLCSERQRT-LLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHhcCCE-EEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 56655 4777 99999998875 589999999999887543
No 164
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=2.1e-18 Score=198.77 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=110.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccc------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA------ 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~------ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.....
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL-SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 4588999998 889999999999999999999997653221 111 11110000
Q ss_pred ----ccch-------------hhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 449 ----KVPW-------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 449 ----~i~~-------------~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+.+ ...++..++..+......+++|++++ ++..+.+++.+|++|||||||+|||+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 0000 11233445555555566678887665 55666677899999999999999999777676
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++.++
T Consensus 175 ~-~~l~~~~~~g~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 175 A-ELLASLHQSGIT-LVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred H-HHHHHHHhcCCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 5 466667777887 99999998766 68999999999998764
No 165
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.76 E-value=3.6e-18 Score=180.59 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=106.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc---cccc-------------------cccccccccc---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------HILSSEYAKV--- 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a---q~G~-------------------~vpa~~~~~i--- 450 (798)
..++.+++++ ..|++++|+||||||||||||+|+++.... ..|. ++|......+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 4688899999 889999999999999999999998764330 1121 2222110000
Q ss_pred -chhh-------------------HHhhhcCchh---hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 451 -PWFD-------------------SVFADIGDEQ---SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 451 -~~~~-------------------~i~~~ig~~~---si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+.+ .++..++... .+......+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 0001 1122223322 1234445677655 56666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
...+.. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 176 ~~~l~~-~L~~~~~~~g~t-il~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 176 QARILD-LLESIVQKRALG-MLLVTHDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred HHHHHH-HHHHHHHhcCcE-EEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 666654 5555654 4787 99999998876 589999999999987643
No 166
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.8e-18 Score=192.75 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=108.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------------ccccccccc-
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA- 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------------~~vpa~~~~- 448 (798)
..+++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 34679999999 889999999999999999999997653211 11 122210000
Q ss_pred -ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 449 -KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 449 -~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+.+ .++..+|..+......+.+|++++ ++..+.+++.+|++|||||||+||||.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 001111 123334554445555667786654 556666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+.. .|.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 199 ~r~~l~~-~L~~l~~~~g~T-IIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 199 IRTEMQD-ELVKLQAKHQRT-IVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHHHHH-HHHHHHHHCCCe-EEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 7777655 5555654 5787 99999998776 68999999999998654
No 167
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.2e-18 Score=191.24 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=109.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccccc---ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~---~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~vfQ-~~~lfp~ltv 108 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA-GQIMLDGVDLSHVPPYQRPINMMFQ-SYALFPHMTV 108 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeC-CCccCCCCCH
Confidence 34688889998 8899999999999999999999987643221 11 1111 000 0111
Q ss_pred hhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.++ ++..++...........+|+++ ++++.+.+++.+|++||||||++|||+.....+
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 111 2223333333344445667554 567777788999999999999999999877777
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
...+.+.+.+.|.| +|++|||.+.+ .+++++..+.+|++...+
T Consensus 189 ~~~l~~l~~~~g~t-ii~vTHd~~ea~~laDri~vl~~G~i~~~g 232 (377)
T PRK11607 189 QLEVVDILERVGVT-CVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232 (377)
T ss_pred HHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEeCCEEEEEc
Confidence 66555555556887 99999998875 689999999999997544
No 168
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.76 E-value=3.4e-18 Score=176.64 Aligned_cols=153 Identities=14% Similarity=-0.011 Sum_probs=103.2
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc--cc-----cc-c---cccchhhHHh--------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--LS-----SE-Y---AKVPWFDSVF-------- 457 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v--pa-----~~-~---~~i~~~~~i~-------- 457 (798)
+|++++++. +.|++++|+||||||||||||+|+++... ..|... .. .. . ..+...+.+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 367889998 88999999999999999999999876432 223221 10 00 0 0011111110
Q ss_pred ----------hhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 003747 458 ----------ADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 526 (798)
Q Consensus 458 ----------~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~V 526 (798)
..++.........+.+|++++ ++..+.+++.+|+++|||||++++|+.....+...+.+.+. +.+ +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~-i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKG-L 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCc-E
Confidence 011122222334556776654 56666778999999999999999999777776554545443 356 8
Q ss_pred EEEecchhHH-hhhccccceeeeEEEEec
Q 003747 527 IATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 527 IitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|++||++... .+|+++..+.+|.+.+.+
T Consensus 157 i~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 157 IVLTHNPRLIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred EEEECCHHHHHHhcCeeEEEECCeEEEeC
Confidence 9999998876 589999999999988654
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.3e-18 Score=183.18 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=107.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------cccccccc---cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~---~~ 449 (798)
..+..+++|+ ..|++++|+||||||||||+|+|+++.... .| .++|.... ..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4588999999 889999999999999999999997653211 11 12222100 00
Q ss_pred cchhhH---------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+. ++..++..+........+|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111111 1222333333334445677655 456666677999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 174 ~~l~~-~l~~l~~~~~t-il~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 174 SQIMK-LLYDLNKEGIT-IIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77755 56666666887 99999998876 489999999999987654
No 170
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=184.34 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=104.2
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------------ccccccccc--
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------------LHILSSEYA-- 448 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------------~~vpa~~~~-- 448 (798)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 589999999 889999999999999999999997653211 11 122211000
Q ss_pred -ccchhhH---------------------HhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 449 -KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 449 -~i~~~~~---------------------i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
...+.+. ++..++.. .......+.+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 0011111 11222331 22233445677655 556666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 184 ~~~~~l~~-~l~~~~~~~~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 184 KGEEDFIN-LFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77666654 5555654 4777 99999998765 689999999999987543
No 171
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.1e-18 Score=174.34 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=93.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----------------------cccccccc---c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----------------------~~vpa~~~---~ 448 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 35689999999 889999999999999999999997653211 11 12222100 0
Q ss_pred ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 449 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 449 ~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
...+.+ .++..++..+......+.+|+++ +++..+.+++.+|++|||||||+|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 001111 11223344444445556677655 55666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
...+.. ++..+.+.|.| ||++||+.++
T Consensus 163 ~~~~~~-~l~~~~~~~~t-ili~sH~~~~ 189 (190)
T TIGR01166 163 REQMLA-ILRRLRAEGMT-VVISTHDVDL 189 (190)
T ss_pred HHHHHH-HHHHHHHcCCE-EEEEeecccc
Confidence 666654 66666767887 9999999764
No 172
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.76 E-value=4e-18 Score=181.72 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=105.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc----ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY----AKV 450 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~----~~i 450 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ...
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 4689999999 889999999999999999999997653221 11 11222100 000
Q ss_pred chh----------------------hHHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 451 PWF----------------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 451 ~~~----------------------~~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+. ..++..++.. .......+.+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 000 1112233432 22233345677655 55666667899999999999999999966
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
...+.. ++..+.+ .|.| ||++||+.+... +|+++..+.+|.+..+.
T Consensus 185 ~~~l~~-~l~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 185 RSQLIN-LMLELQEKQGIS-YIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHH-HHHHHHHHcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 666654 5556655 4777 999999987775 79999999999987543
No 173
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.1e-18 Score=182.11 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=105.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------ccccccccc----ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEYA----KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------~~vpa~~~~----~i~~ 452 (798)
++.+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 35689999999 889999999999999999999997653211 11 122221000 0000
Q ss_pred -------------------------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 -------------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 -------------------------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
....+..++...........+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~ 177 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 0112233444444445556677665 45666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
...+.. ++..+.+.|.| ||++||+.+.. .+|+++..+ +|++...
T Consensus 178 ~~~l~~-~L~~~~~~g~t-viivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 178 EARIIS-LLRELRDEGKT-MLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred HHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 777654 66667767887 99999998765 688877544 8888654
No 174
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.76 E-value=4.8e-18 Score=177.89 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchh-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF- 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~- 453 (798)
+.++.+++++ ..|++++|+||||+|||||+|+|+++... ..| .++|..... ...+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 4689999999 88999999999999999999999765321 111 122210000 00111
Q ss_pred --------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 454 --------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 454 --------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
..++..++..+........+|+++ +++..+.+++.+|+++|||||++|+|+.....+..
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 112333444444444556677655 55666667799999999999999999966666654
Q ss_pred HHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 513 SLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 513 all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
++..+.+. |+| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 -~l~~~~~~~~~t-vli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 172 -WLRKLHDEVHVT-TVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred -HHHHHHHhcCCE-EEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 66666655 777 99999998864 68999999999998754
No 175
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=3.6e-18 Score=180.25 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=104.8
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccc--cccchh-
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVPWF- 453 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~--~~i~~~- 453 (798)
++.+++|+ ..|++++|+||||||||||+++|+++.. . .|. ++|.... ......
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 67888888 8899999999999999999999976532 1 221 1221000 000111
Q ss_pred -------------------hHHhhhcCchhhHhhhhhhhhHHHHHH-HHHHHhCC-------CCeEEEEecCCCCCChHH
Q 003747 454 -------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQST-------SQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 -------------------~~i~~~ig~~~si~~~lstfs~~~~ri-~~il~~a~-------~psLLLLDEP~sGlDp~e 506 (798)
..++..++..+........+|+++++. ..+.+++. +|++|||||||+|||+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 122333444444455566778766554 44445554 679999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd~ 554 (798)
...+. .++..+.+.|.| ||++||+.+. ..+|+++..+.+|++..++
T Consensus 169 ~~~l~-~~L~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G~i~~~g 215 (248)
T PRK03695 169 QAALD-RLLSELCQQGIA-VVMSSHDLNHTLRHADRVWLLKQGKLLASG 215 (248)
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 66665 566667666887 9999999874 5799999999999987643
No 176
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.76 E-value=3.1e-18 Score=178.85 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=104.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc-cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY-AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~-~~i~~~ 453 (798)
.+++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 4688999999 889999999999999999999997653221 11 11221000 000111
Q ss_pred hHHh---------------hhcCchh-----------hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSVF---------------ADIGDEQ-----------SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i~---------------~~ig~~~-----------si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+.+. ...+..+ .+......+|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 1110 0011111 11223356776654 5566667799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
...+.. ++..+.+ |.| ||++||+.+....|+++..+.+|.+..+.
T Consensus 174 ~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 174 EHAIMR-NMHDICA-GRT-VIIIAHRLSTVKNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHH-HHHHhcC-CCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEc
Confidence 777655 5555654 777 99999999888889999999999987653
No 177
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.76 E-value=4.3e-18 Score=179.55 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=105.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------------cccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------LHILSS 445 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------------~~vpa~ 445 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++..
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 4578999999 889999999999999999999997653211 11 111211
Q ss_pred ccc----ccchhh----------------------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEec
Q 003747 446 EYA----KVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 497 (798)
Q Consensus 446 ~~~----~i~~~~----------------------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDE 497 (798)
... .+...+ .++..++.. .........+|+++ +++..+.+++.+|++|||||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE 174 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 000001 112233332 23344455677655 56666677899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 498 IGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
||+|||+.....+.. ++..+. +.|.| +|++||+.+... +|+++..+.+|.+....
T Consensus 175 P~~~LD~~~~~~l~~-~l~~~~~~~~~t-ii~vsH~~~~~~~~~d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 175 PTGGLDVSVQARLLD-LLRGLVRDLGLA-VIIVTHDLGVARLLAQRLLVMQQGRVVESG 231 (253)
T ss_pred CCccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEEC
Confidence 999999977777655 454554 45787 999999988775 89999999999987543
No 178
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=177.04 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=101.9
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhhH----
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS---- 455 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~~---- 455 (798)
+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 56666 678999999999999999999997653211 11 122211000 0111111
Q ss_pred -----------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Q 003747 456 -----------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517 (798)
Q Consensus 456 -----------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~ 517 (798)
++..+|....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 2233444444445555677655 45666667899999999999999999977777655 5555
Q ss_pred HHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 518 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 518 L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.. .|.| +|++||+.+.. .+|+++..+.+|.+..++
T Consensus 175 ~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 175 VCQERQLT-LLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 554 4787 99999998875 689999999999987543
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=3.2e-18 Score=198.33 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=110.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i 450 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 35688999999 889999999999999999999997653221 121 2221000 000
Q ss_pred chhh-----------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 451 PWFD-----------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 451 ~~~~-----------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
.+.+ .++..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....+.
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~- 180 (510)
T PRK15439 102 SVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF- 180 (510)
T ss_pred cHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-
Confidence 1111 122334444444555667887665 555666779999999999999999997777765
Q ss_pred HHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 513 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 513 all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 181 ~~l~~~~~~g~t-iiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 181 SRIRELLAQGVG-IVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 466667777887 99999998776 68999999999998764
No 180
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.8e-18 Score=173.77 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=104.6
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh----------------------------hcccccccccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----------------------------MAKSGLHILSS 445 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~----------------------------~aq~G~~vpa~ 445 (798)
+.+.++.++++. ..+.+++|+||+|||||||||++..+.- -.+.|..+..-
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 456789999999 8899999999999999999999953211 01122221100
Q ss_pred cccccchhhHHhh---------------------hcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 446 EYAKVPWFDSVFA---------------------DIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 446 ~~~~i~~~~~i~~---------------------~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
.....++++++.. .-..+ +.+..+...+||++ +|+..+.+++.+|++|||||||
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 1111233443311 01111 12222223456554 5666666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
|+|||.....+.. ++..|.+ .-| |++|||++..+ +.+|++..+.+|.+..
T Consensus 178 SALDPIsT~kIEe-Li~eLk~-~yT-IviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 178 SALDPISTLKIEE-LITELKK-KYT-IVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred cccCchhHHHHHH-HHHHHHh-ccE-EEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 9999988888754 6667774 456 89999998877 5888898899998764
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.76 E-value=4.6e-18 Score=175.88 Aligned_cols=151 Identities=20% Similarity=0.270 Sum_probs=104.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~--~~ 449 (798)
..++.+++|. ..|++++|+||||+|||||+++|++.... ..| .++|.... ..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 5689999999 88999999999999999999999764311 111 11121000 00
Q ss_pred cch----------------------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 450 VPW----------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 450 i~~----------------------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
..+ +..++..++...........+|+++ +++..+.+++.+|++||||||++|+|+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 011 1112233444444445556677655 55666667799999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEE
Q 003747 507 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 550 (798)
Q Consensus 507 g~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v 550 (798)
...+. .+++.+.+ .+.| ||++||+.++..+|+++..+.+|.+
T Consensus 177 ~~~l~-~~l~~~~~~~~~t-ii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 177 GRDVV-ELMQKLAREQGCT-ILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHhhCCEEEEEECCEE
Confidence 66665 46666654 5787 9999999998889999888887764
No 182
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.6e-18 Score=174.07 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=104.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--cccccc-cccc--------cccccchhh---HHhhhc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLH-ILSS--------EYAKVPWFD---SVFADI 460 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G~~-vpa~--------~~~~i~~~~---~i~~~i 460 (798)
+..++.++++. ..|++++|+|||||||||||++|+++... +..|.. +... ....+.+.. .++..+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45789999999 88999999999999999999999877541 223321 1000 001122211 122223
Q ss_pred CchhhHh--------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEe
Q 003747 461 GDEQSLS--------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATT 530 (798)
Q Consensus 461 g~~~si~--------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitT 530 (798)
++.+++. .....+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+. +.+++|++|
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMADVLKTTTFVSLY 177 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEEc
Confidence 3333332 3345567554 56667778899999999999999999976666654 66666654 565345556
Q ss_pred cch-hHHhhhccccceeeeEEEE
Q 003747 531 HHG-ELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 531 Hd~-el~~~a~~~~~l~ng~v~f 552 (798)
|+. ++..+|+++..+.+|.+..
T Consensus 178 h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 178 QASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCHHHHHHhCCeEEEEECCEEEe
Confidence 664 5567999999999999864
No 183
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.75 E-value=5.2e-18 Score=189.41 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------------------cccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILS 444 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------------------~vpa 444 (798)
+...++++++|+ ..|++++|+||||||||||||+|+++.... .|. +++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 345689999999 889999999999999999999997653221 111 1111
Q ss_pred ccccc---cchhhH---------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCC
Q 003747 445 SEYAK---VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 445 ~~~~~---i~~~~~---------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~ 499 (798)
.... ..+.++ ++..+|..+........+|++++ ++..+.+++.+|++|||||||
T Consensus 114 -~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 114 -KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred -CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0000 011111 22333444444445566777665 555666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+||||.....+...+. .+.+ .+.| ||++|||.+.. .+|+++..+.+|.+...+
T Consensus 193 s~LD~~~r~~l~~~L~-~l~~~~~~T-II~iTHdl~e~~~l~DrI~vl~~G~iv~~g 247 (382)
T TIGR03415 193 SALDPLIRTQLQDELL-ELQAKLNKT-IIFVSHDLDEALKIGNRIAIMEGGRIIQHG 247 (382)
T ss_pred ccCCHHHHHHHHHHHH-HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999988888766444 5554 4887 99999998875 799999999999987643
No 184
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.7e-18 Score=178.98 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=104.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++... +..|. ++|....
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 34689999999 88999999999999999999999876432 11221 1111000
Q ss_pred c-ccchhhHH---------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 A-KVPWFDSV---------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~-~i~~~~~i---------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
. .....+.+ +..++.. +.+......+|+++ +++..+.+++.+|+++||||||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0 00111111 1111110 11222334566555 56666667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|+.....+. .+++.+.+ +.| ||++||+.+.. .+|+++..+.+|.+....
T Consensus 184 ~LD~~~~~~l~-~~l~~l~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 184 ALDPISTARIE-DLIMNLKK-DYT-IVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred ccCHHHHHHHH-HHHHHHhh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99997777665 46666654 777 99999998776 689999999999987653
No 185
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.9e-18 Score=176.53 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=107.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccc--ccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~--~i~~~~ 454 (798)
+.+..+++++ ..|++++|+||||+|||||||+|++...... | .++|..... ...+.+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS-GEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 4689999999 8899999999999999999999976532211 1 111210000 001111
Q ss_pred ---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 455 ---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 455 ---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
.++..++....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+..
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~ 171 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 12233444444444556677554 56667778899999999999999999977776654
Q ss_pred HHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 513 SLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 513 all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
++..+.+. |.| ||++||+.+.. .+|+++..+.+|++...+
T Consensus 172 -~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 172 -ELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred -HHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 66666654 787 99999998865 689999999999987543
No 186
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.75 E-value=6.5e-18 Score=177.76 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=105.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|. ...
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~~ 92 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ-KPN 92 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEec-Ccc
Confidence 4588899999 889999999999999999999997765322 0221 1111 000
Q ss_pred c--cchhhHH----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ....+.+ +..++.. +........+|+++ +++..+.+++.+|+++||||||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 1111111 1222333 23334445677655 5566666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 173 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 173 SALDPIATGKIE-ELIQELKK-KYT-IVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred ccCCHHHHHHHH-HHHHHHHh-cCe-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999997776665 46666665 466 99999998865 68999999999998654
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.8e-18 Score=197.47 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=109.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-ccccc----------------------ccccccc--cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--AK 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~----------------------~vpa~~~--~~ 449 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++... +..|. ++|.... ..
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 35689999999 88999999999999999999999876542 12221 1111000 00
Q ss_pred cchhhH------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 450 VPWFDS------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 450 i~~~~~------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+.+. ++..++..........++|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 111111 1222333333344456777665 556666677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.....+.. ++..+.+.|.| ||++|||.+.. .+|+++..+.+|++.++
T Consensus 177 ~~~~~l~~-~l~~l~~~~~t-vi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 177 SETAVLLD-IIRDLKAHGIA-CIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHHHHH-HHHHHHHCCCE-EEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 77777654 66667777887 99999998776 58999999999998764
No 188
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.75 E-value=4.1e-18 Score=176.96 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=104.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--ccccc------------------ccccccc--cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGL------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G~------------------~vpa~~~--~~i~~~ 453 (798)
..+..+++++ ..|++++|+||||||||||+|+|+++... +..|. ++|.... ..+.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5688899988 88999999999999999999999776541 12221 1221000 001111
Q ss_pred hHH-------------------------hhhcCchhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 454 DSV-------------------------FADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 454 ~~i-------------------------~~~ig~~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+.+ +..++...........+|++ .+++..+.+++.+|+++||||||+|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 111 11111111122233456654 4566677778999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhccccceeeeEEEE
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~--el~~~a~~~~~l~ng~v~f 552 (798)
..+.. ++..+.+.|.| +|++||+. ++..+|+++..+.+|.+..
T Consensus 180 ~~~~~-~l~~~~~~~~t-iii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 180 LNLVS-TLSQLARRNRI-VILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 66654 66666666787 89999996 5678999999999998864
No 189
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.75 E-value=5.1e-18 Score=197.02 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=107.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhccccc---------------------------------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL--------------------------------- 440 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~--------------------------------- 440 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++. +.+..|.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 34689999999 889999999999999999999998764 1121221
Q ss_pred ---------------------cccccccc---ccchhhH---------------------HhhhcCchhhHhhhhhhhhH
Q 003747 441 ---------------------HILSSEYA---KVPWFDS---------------------VFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 441 ---------------------~vpa~~~~---~i~~~~~---------------------i~~~ig~~~si~~~lstfs~ 475 (798)
++|..... .....+. ++..+|..+.....++++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 11110000 0011111 12223333333445567776
Q ss_pred HHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 476 HLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 476 ~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
+++ ++..+.+++.+|++|||||||+|||+.....+.. +++.+. +.|.| ||++|||.++. .+|+++..+.+|.+..
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-viivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGIS-MVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 654 5666667799999999999999999977777655 566664 45887 99999998876 5899999999998865
Q ss_pred e
Q 003747 553 D 553 (798)
Q Consensus 553 d 553 (798)
.
T Consensus 250 ~ 250 (520)
T TIGR03269 250 E 250 (520)
T ss_pred e
Confidence 3
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.75 E-value=4.3e-18 Score=196.86 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=108.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i 450 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 35689999999 889999999999999999999997654221 111 1111000 000
Q ss_pred chhhH-------------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 451 PWFDS-------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 451 ~~~~~-------------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.+.+. ++..+|..+......+++|++++ ++..+.+++.+|++|||||||+|||+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 11111 12223333333444567787665 55556677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.....+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|++..+
T Consensus 175 ~~~~~l~-~~l~~l~~~~~t-vii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 175 TETESLF-RVIRELKSQGRG-IVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 7777765 466677777887 99999998776 68999999999998654
No 191
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.75 E-value=4.4e-18 Score=177.80 Aligned_cols=154 Identities=13% Similarity=0.084 Sum_probs=102.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccc-cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY-AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~-~~i~~~ 453 (798)
..+..+++|+ ..|++++|+|||||||||||++|+++.... .|. ++|.... ....+.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT-SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC-CCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 4588899988 889999999999999999999997753221 121 1111000 000111
Q ss_pred hHHhh---------------hcCchhh-----------HhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSVFA---------------DIGDEQS-----------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i~~---------------~ig~~~s-----------i~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+.+.. ..+..+. .......+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11100 0011111 111224567655 45556667789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
...+.. ++..+. .|.+ ||++||+.+...+|+++..+.+|.+..+.
T Consensus 175 ~~~l~~-~l~~~~-~g~~-vi~~sh~~~~~~~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 175 EKLVQE-ALDRAM-KGRT-TIVIAHRLSTIRNADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHH-HHHHhc-CCCE-EEEEeCCHHHHhhCCEEEEEECCEEEEeC
Confidence 766654 666665 6777 99999998888889999999999987643
No 192
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.3e-18 Score=185.08 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=107.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------------------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------------ 439 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------------------ 439 (798)
..++.+++|+ ..|++++|+||||||||||+|+|+++.... .|
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 3589999999 889999999999999999999997653221 11
Q ss_pred -cccccccc---cccchhhH---------------------HhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeE
Q 003747 440 -LHILSSEY---AKVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSL 492 (798)
Q Consensus 440 -~~vpa~~~---~~i~~~~~---------------------i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psL 492 (798)
.+++.... ....+.+. ++..++.. .........+|+++ +++..+.+++.+|++
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 01111000 00011111 12223332 22334445677655 566666778999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 493 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 493 LLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||||||+|||+.....+.. ++..+...|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 198 LLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~T-iiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMMQ-LILDAKANNKT-VFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred EEEECCccCCCHHHHHHHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999977777654 66666667887 99999999865 689999999999998764
No 193
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.75 E-value=5.9e-18 Score=175.85 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=99.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc-ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~-~i~~ 452 (798)
+..+..+++|+ ..|++++|+|||||||||||++|+++... ..| .++|..... ...+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 35689999999 88999999999999999999999765321 112 112210000 0011
Q ss_pred hh-------------------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 453 FD-------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 453 ~~-------------------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
.+ .++..++.. .........+|+++ +++..+.+++.+|+++||||||+|||+.....+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 123334442 22344455677554 5666667789999999999999999997666665
Q ss_pred HHHHHHHHh-cCCcEEEEEecchhHHhhhcccccee
Q 003747 512 MSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 512 ~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
. ++..+.. .|.| ||++||+.+...+|+++..+.
T Consensus 178 ~-~l~~~~~~~~~t-vii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 178 E-IIHRYVREQNIA-VLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred H-HHHHHHHhcCCE-EEEEECChHHHHhCCEEEEEe
Confidence 4 5555554 5787 999999988877777776663
No 194
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.75 E-value=6e-18 Score=187.65 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=102.8
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------ccccccc--cccchh
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~--~~i~~~ 453 (798)
+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+.+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 77777 788999999999999999999997654221 111 1111000 001111
Q ss_pred h-------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 454 D-------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 454 ~-------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
+ .++..++..+.......++|+++ +++..+.+++.+|++|||||||+|||+.....+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~- 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP- 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-
Confidence 1 12233444444445556778665 45666667899999999999999999977777655
Q ss_pred HHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 514 LLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 514 ll~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
++..+... |.| +|++||+.+.. .+|+++..+.+|++...
T Consensus 173 ~L~~l~~~~g~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 173 YLERLHAEFGIP-ILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 55556554 787 99999998776 58999999999998754
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.9e-18 Score=196.04 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=109.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------cccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~--~~i 450 (798)
++.+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 34689999999 899999999999999999999997653211 11 11221000 001
Q ss_pred chhhH----------------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCC
Q 003747 451 PWFDS----------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 451 ~~~~~----------------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sG 501 (798)
.+.+. ++..+|..+......+++|++++ ++..+.+++.+|++|||||||+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 11111 12233333333445567887665 55556677999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
||+.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+.+++
T Consensus 176 LD~~~~~~l~-~~l~~l~~~g~t-iiivsHd~~~~~~~~d~v~~l~~G~i~~~g 227 (510)
T PRK09700 176 LTNKEVDYLF-LIMNQLRKEGTA-IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227 (510)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEeeec
Confidence 9997766665 466677777887 99999998776 589999999999987653
No 196
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=8.8e-18 Score=172.45 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=110.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc---------ccccccc-----ccchhhHHhhhc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------ILSSEYA-----KVPWFDSVFADI 460 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~---------vpa~~~~-----~i~~~~~i~~~i 460 (798)
...++.+++|+ +.|++++|+||||+|||||||+|+++.... .|.. .|..... .++--.++|..+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 45799999999 899999999999999999999997654322 1111 0110000 111112344444
Q ss_pred CchhhHh-------------------------------hhhhhhhHHHHH-HHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 461 GDEQSLS-------------------------------QSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 461 g~~~si~-------------------------------~~lstfs~~~~r-i~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
++++|+. +.-.++||+.++ ++...+++.+|+|||||||+.||-|.-..
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence 4443332 222356665554 44555679999999999999999998888
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.. +++.|++. |.| |++|.++..++ .++|+.+.+.+|.+.+.+
T Consensus 174 ~I~~-~i~~l~~~~g~t-IlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 174 EIFE-AIKELRKEGGMT-ILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHH-HHHHHHHcCCcE-EEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 8876 56667765 667 99999998888 599999999999999876
No 197
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.75 E-value=7.6e-18 Score=176.94 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=101.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhccccccc-ccc--------cc--cccchh----------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHI-LSS--------EY--AKVPWF---------- 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~~v-pa~--------~~--~~i~~~---------- 453 (798)
+.+.+++++. ..|++++|+||||||||||||+|+++. +.+..|... ... .. ..+.+.
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 4688999998 889999999999999999999998874 223333211 000 00 001100
Q ss_pred h-H-----Hh-------------------------hhcCchh-hHhhhh-hhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 454 D-S-----VF-------------------------ADIGDEQ-SLSQSL-STFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 454 ~-~-----i~-------------------------~~ig~~~-si~~~l-stfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. . ++ ..++..+ ...... ..+|+++ +++..+.+++.+|++|||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 0 00 0001100 001111 2477655 4566666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhh--hccccceeeeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL--KYSNDFFENACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~--a~~~~~l~ng~v~fd 553 (798)
+|||+.....+. .++..+.+.|+| ||++||+.++... ++++..+.+|++...
T Consensus 174 ~~LD~~~~~~l~-~~l~~l~~~~~t-iii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 174 SGLDIDALKIVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred ccCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999997766665 466667777887 9999999888764 677888888888654
No 198
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=6e-18 Score=193.57 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=110.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-cc---------ccccccchhh-----------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LS---------SEYAKVPWFD----------- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v-pa---------~~~~~i~~~~----------- 454 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++..+. .|... .. .....+...+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 4689999999 889999999999999999999998764322 22110 00 0000011111
Q ss_pred ----------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 455 ----------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 455 ----------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
.++..++..+.+......+|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+.+.|+
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle-lL~el~~~G~ 194 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD-KMNEFKEQGK 194 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhCCC
Confidence 123334555555566677887665 5566667899999999999999999977776654 5666677788
Q ss_pred cEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 524 LLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 524 t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 195 T-IIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 195 T-IFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 7 99999998776 58999999999988654
No 199
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.5e-18 Score=176.15 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=102.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~ 452 (798)
..+..+++++ ..|++++|+||||||||||||+|+++.... .|. ++|. .... ..+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS-SGSILIDGQDIREVTLDSLRRAIGVVPQ-DTVLFNDTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEhhhCCHHHHHhhEEEECC-CChhhcchH
Confidence 4588899998 889999999999999999999997764322 221 1111 0000 011
Q ss_pred hhHHh---------------hhcCchhhH-----------hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i~---------------~~ig~~~si-----------~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+. ...+..+.+ ......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 92 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 92 GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11110 001111111 11123566554 5666677889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+.+ |.| ||++||+.+....|+++..+.+|.+..+
T Consensus 172 ~~~~l~~-~l~~~~~-~~t-iii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 172 TEREIQA-ALRDVSK-GRT-TIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHH-HHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 7776654 5556666 777 9999999988878999999999998754
No 200
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=8.1e-18 Score=173.82 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=109.5
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----cccccc----------------cccccc----c
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHILS----------------SEYAKV----P 451 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G~~vpa----------------~~~~~i----~ 451 (798)
.+.++|+|+ ..|++++|+|++|||||||.|+|+++.-..+. |..++. .....+ +
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 589999999 88999999999999999999999776543321 111110 000000 0
Q ss_pred h-------------------hhHHhhhcCchhhH-hhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 452 W-------------------FDSVFADIGDEQSL-SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 452 ~-------------------~~~i~~~ig~~~si-~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+ ...++..+|...+. ......||| +.+|++.+.+++.+|++||+|||||+||+.-.+.+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 0 11233344443332 233455775 55778888888999999999999999999666665
Q ss_pred HHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 511 GMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+. +++.| +|++|||..+.. +|+++..+.||++....
T Consensus 181 l-nlL~~l~~~~~lt-~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 181 L-NLLLELKKERGLT-YLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred H-HHHHHHHHhcCce-EEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 4 5666665 45777 999999998885 89999999999998654
No 201
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=5.5e-18 Score=173.18 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=99.5
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------cccccccc-cccchhhHHh----------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSVF---------- 457 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~-~~i~~~~~i~---------- 457 (798)
.++.+++++ +.|++++|+|||||||||||++|+++... ..| .++|.... ......+++.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 689999999 89999999999999999999999775432 223 22332100 0111112211
Q ss_pred ----hhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 458 ----ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 458 ----~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
..++..+.+. .....+|+++ +++..+.+++.+|+++||||||+|||+.....+...++..+...
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 1112222111 1224566554 56666677899999999999999999976676765556555555
Q ss_pred CCcEEEEEecchhHHhhhccccceeee
Q 003747 522 GSLLTIATTHHGELKTLKYSNDFFENA 548 (798)
Q Consensus 522 g~t~VIitTHd~el~~~a~~~~~l~ng 548 (798)
|.| ||++||+.+....++++..+.+|
T Consensus 178 ~~t-vi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 178 NKT-RILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CCE-EEEEeCCHHHHhhCCEEEEEeCC
Confidence 777 99999998887768777776655
No 202
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.7e-18 Score=187.16 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------ccccccccc---cch
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYAK---VPW 452 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~~~---i~~ 452 (798)
+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|. .... ..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q-~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ-DARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccchhhCCEEEEcC-CcccCCCCcH
Confidence 67777 778999999999999999999997654221 111 1111 0000 011
Q ss_pred h---------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 453 F---------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 453 ~---------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
. ..++..++..+........+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++.
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~-~L~ 172 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-YLE 172 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHH
Confidence 1 122334455555555666778665 55666667899999999999999999977777655 555
Q ss_pred HHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 517 AFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 517 ~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.+. |.| +|++|||.+.. .+|+++..+.+|.+...+
T Consensus 173 ~l~~~~g~t-ii~vTHd~~~~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 173 RLAREINIP-ILYVSHSLDEILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred HHHHhcCCe-EEEEecCHHHHHHhCCEEEEEeCCEEEEec
Confidence 55544 787 99999998755 689999999999987543
No 203
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=6.8e-18 Score=174.12 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=98.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------cccccccc--cccchhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY--AKVPWFD 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------~~vpa~~~--~~i~~~~ 454 (798)
++.+..+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... ..+...+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 34688999999 889999999999999999999997653211 11 12221000 0011111
Q ss_pred H------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 455 S------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 455 ~------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
. ++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+.....+ ..++
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l 180 (214)
T PRK13543 102 NLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMI 180 (214)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 1 1222333333344445677655 556666677999999999999999999666665 4566
Q ss_pred HHHHhcCCcEEEEEecchhHH-hhhccccce
Q 003747 516 EAFAESGSLLTIATTHHGELK-TLKYSNDFF 545 (798)
Q Consensus 516 ~~L~~~g~t~VIitTHd~el~-~~a~~~~~l 545 (798)
..+.+.|.| +|++||+.+.. .+|++...+
T Consensus 181 ~~~~~~~~t-iii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 181 SAHLRGGGA-ALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHhCCCE-EEEEecChhhhhhhcceEEEE
Confidence 666777887 99999998766 577766554
No 204
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.5e-18 Score=170.45 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=104.8
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--------------------ccccccccccccccchh
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYAKVPWF 453 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--------------------q~G~~vpa~~~~~i~~~ 453 (798)
.++.+.++++|+ ..|++++|+||||+|||||||.+++-.-.. +.-...|......++|.
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 467789999999 899999999999999999999995421110 00001111111111111
Q ss_pred -------------------------hHHhhhcCchhhHhhhhhhhhHH-HHHH--HHHHHhCC----CCeEEEEecCCCC
Q 003747 454 -------------------------DSVFADIGDEQSLSQSLSTFSGH-LKQI--GNIISQST----SQSLVLLDEIGAG 501 (798)
Q Consensus 454 -------------------------~~i~~~ig~~~si~~~lstfs~~-~~ri--~~il~~a~----~psLLLLDEP~sG 501 (798)
.+.++..+..........++||+ .+|+ +..++... .+..|+|||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 11222222222222233455654 3433 34444433 4459999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
||+.....+. .+.+.|...|+. |+++-||++++. |||+++.+.+|++...+
T Consensus 172 LDi~HQ~~tl-~laR~la~~g~~-V~~VLHDLNLAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 172 LDIAHQHHTL-RLARQLAREGGA-VLAVLHDLNLAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred cchHHHHHHH-HHHHHHHhcCCc-EEEEEccchHHHHhhheeeeeeCCeEeecC
Confidence 9997777765 478888888887 999999999985 99999999999998764
No 205
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=8e-18 Score=172.22 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=96.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------ccccccc--cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~~--~~i~~~ 453 (798)
..+..+++++ ..|++++|+||||||||||+++|++..... .|. +++.... ......
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 4688999999 889999999999999999999997653211 121 1111000 000111
Q ss_pred ------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 454 ------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 454 ------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
+.++..+|..+......+.+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .+
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE-AL 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 122334455544555666778665 4566666779999999999999999997777765 46
Q ss_pred HHHHHhcCCcEEEEEecchhHHhhh
Q 003747 515 LEAFAESGSLLTIATTHHGELKTLK 539 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~~~a 539 (798)
+..+.+.|.| +|++||+.++...+
T Consensus 172 l~~~~~~~~t-iii~sh~~~~i~~~ 195 (204)
T PRK13538 172 LAQHAEQGGM-VILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHCCCE-EEEEecChhhhccC
Confidence 6666666787 99999998887533
No 206
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.9e-18 Score=183.98 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=107.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh---cccc-------------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~---aq~G-------------------------~~vpa~~~ 447 (798)
..++.|++|+ ..|++++|+||||||||||+++|+++... ...| .++|....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 3589999999 89999999999999999999999765421 0111 12222110
Q ss_pred c----ccchhh----------------------HHhhhcCch---hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEec
Q 003747 448 A----KVPWFD----------------------SVFADIGDE---QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDE 497 (798)
Q Consensus 448 ~----~i~~~~----------------------~i~~~ig~~---~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDE 497 (798)
. .+.+.+ .++..+|+. ..+......+|++|+ ++..+.+++.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 000001 112233432 123345567787665 5666667899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 498 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
||+|||+.....+.. ++..+.+ .|.| +|++|||.++. .+|+++..+.+|++..+
T Consensus 180 Pts~LD~~~~~~il~-lL~~l~~~~g~t-il~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 180 PTTALDVTIQAQIIE-LLLELQQKENMA-LVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCCCCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999977776654 6666665 5887 99999999877 68999999999998754
No 207
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.1e-18 Score=178.98 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=103.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. ++|....
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 4689999999 8899999999999999999999987642 1 12231 1111000
Q ss_pred cccchhhHH----------------------hhhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 AKVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~~i~~~~~i----------------------~~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
......+.+ +..++. ...+.....++|+++ +++..+.+++.+|++|||||||+
T Consensus 106 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 185 (260)
T PRK10744 106 FPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCS 185 (260)
T ss_pred CcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 000111111 111121 111223334566554 56666677899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+.+ +.| ||++||+.+.. .+++++..+.+|++..++
T Consensus 186 ~LD~~~~~~l~~-~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 186 ALDPISTGRIEE-LITELKQ-DYT-VVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred cCCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999966666654 6656654 676 89999998776 689999999999987654
No 208
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.74 E-value=4.9e-18 Score=165.07 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
..+..++++. ..|++++|+||||+|||||+++|+++.... .|...-. ....+.+..+ +|+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~-~~~~i~~~~~-----------------lS~ 73 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWG-STVKIGYFEQ-----------------LSG 73 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEEC-CeEEEEEEcc-----------------CCH
Confidence 3578888988 889999999999999999999996543222 2321111 1111222111 554
Q ss_pred -HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeee
Q 003747 476 -HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 548 (798)
Q Consensus 476 -~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng 548 (798)
+.+++..+.+++.+|+++|||||++|+|+.....+.. +++.+ +.| +|++||+.+.. .+++++..+.+|
T Consensus 74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~---~~t-il~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALKEY---PGT-VILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHc---CCE-EEEEECCHHHHHHhCCEEEEEeCC
Confidence 4456666777899999999999999999966666544 44443 466 99999998877 578888777665
No 209
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=6.5e-18 Score=178.25 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=103.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. ++|. ...
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 97 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ-KPN 97 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEec-CCC
Confidence 4688999999 8899999999999999999999987531 1 12231 1111 000
Q ss_pred cc--chhhHHh----------------------hhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 KV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~i--~~~~~i~----------------------~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+ .+.+.+. ..++..+ ........+|+++ +++..+.+++.+|++|||||||
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 1111111 1112111 1122334577655 4556666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 178 ~~LD~~~~~~l~~-~l~~~~~-~~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 178 SALDPIATQKIEE-LIHELKA-RYT-IIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCe-EEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999977776654 6666654 677 99999998776 689999999999987543
No 210
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5.9e-18 Score=176.24 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=102.0
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cchh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPWF 453 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~~ 453 (798)
.+..+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|. .... ..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC-CCEEEECCEEhhhCCHHHHHhhEEEeCC-CCeeccccHH
Confidence 588899998 889999999999999999999997664321 121 1121 0000 0111
Q ss_pred hHHhh---------------hcCchhh-----------HhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSVFA---------------DIGDEQS-----------LSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i~~---------------~ig~~~s-----------i~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+.+.. ..+..+. .......+|++ .+++..+.+++.+|+++||||||+|||+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11110 0011111 11123356654 456666777899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
...+.. ++..+.+ +.| ||++||+.+....|+++..+.+|.+..+
T Consensus 174 ~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 174 ERLVQA-ALERLMK-NRT-TFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHHH-HHHHhcC-CCE-EEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 777654 6666654 777 9999999888877999999999998654
No 211
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.1e-18 Score=174.65 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=102.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|. ....+ .+
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 93 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTI 93 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEecC-CchhhhhHH
Confidence 3588899999 88999999999999999999999765322 1221 1111 00000 01
Q ss_pred hhHHh---------------hhcCchhhH-----------hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i~---------------~~ig~~~si-----------~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+. ..++....+ ......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 94 MENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11110 011111111 11124566554 5666667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+. .+.| ||++||+.+....|+++..+.+|.+..+
T Consensus 174 ~~~~l~~-~l~~~~-~~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 174 TEKLIQE-ALEKLM-KGRT-SIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHH-HHHHhc-CCCE-EEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 7777654 555665 4777 9999999888878899999999998754
No 212
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.74 E-value=6.9e-18 Score=177.82 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=104.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhcccccc----------------------cccccccc---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLH----------------------ILSSEYAK--- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~~----------------------vpa~~~~~--- 449 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++. +.+..|.. +|. ....
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q-~~~~~~~ 98 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQ-YPIEIPG 98 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEec-ccccccc
Confidence 4689999999 889999999999999999999998752 12222311 111 0000
Q ss_pred cchhh----------------------------HHhhhcCchh-hHhhhhh-hhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 450 VPWFD----------------------------SVFADIGDEQ-SLSQSLS-TFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 450 i~~~~----------------------------~i~~~ig~~~-si~~~ls-tfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
....+ .++..++..+ .....+. .+|+++ +++..+.+++.+|+++|||||
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 00000 1112222221 1223333 377655 556666678999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~-a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+.. ++..+.+.|.| ||++||+.++.. + ++++..+.+|.+..++
T Consensus 179 t~~LD~~~~~~l~~-~l~~~~~~g~t-ii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 179 DSGLDIDALKIIAE-GINKLMTSENS-IILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred cccCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999977777654 66666666887 999999988875 4 7888888999987654
No 213
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=8e-18 Score=173.76 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=103.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|. ....+ .+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~l~~~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-SGSILIDGVDISKIGLHDLRSRISIIPQ-DPVLFSGTI 94 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhHhCCHHHHhhhEEEECC-CCccccchH
Confidence 4689999999 889999999999999999999997653221 121 1121 00000 01
Q ss_pred hhH--------------HhhhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS--------------VFADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+. .+..++..+.+. .....+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 95 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 95 RSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 112233333222 2345667554 56666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
...+.. ++..+.. +.| ||++||+.+....|+++..+.+|.+..+
T Consensus 175 ~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 175 DALIQK-TIREAFK-DCT-VLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHH-HHHHhcC-CCE-EEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 666654 5555544 566 9999999988877888889999988654
No 214
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.2e-18 Score=177.26 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=102.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh--hhc--cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--MMA--KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~--~~a--q~G~-----------------------~vpa~~~~ 448 (798)
..++.+++++ ..|++++|+||||||||||||+|+++. ..+ ..|. ++|.....
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 4688999998 889999999999999999999997642 111 1221 11110000
Q ss_pred -ccchhhHH----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 449 -KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 449 -~i~~~~~i----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
...+.+.+ +..++.. .........+|+++ +++..+.+++.+|+++||||||+
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 00111111 1112221 11122334566555 56666667899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+. .+.| ||++||+.+.. .+|+++..+.+|++....
T Consensus 176 ~LD~~~~~~l~~-~l~~~~-~~~t-iiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 176 ALDPISTAKVEE-LIHELK-KDYT-IVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred cCCHHHHHHHHH-HHHHHh-cCCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999977776654 555664 4677 99999998776 689999999999987543
No 215
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=177.85 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=105.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++... +..|. ++|....
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 35689999999 88999999999999999999999876532 12231 1111000
Q ss_pred c-ccchhhHH-----------------------hhhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 A-KVPWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~-~i~~~~~i-----------------------~~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
. ...+.+.+ +..++... ........+|+++ +++..+.+++.+|++||||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00111111 11122211 1122345567554 566667778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+. .++..+.. +.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 191 t~~LD~~~~~~l~-~~L~~l~~-~~t-iiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 191 CSALDPIATAKVE-ELIDELRQ-NYT-IVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred CcCCCHHHHHHHH-HHHHHHhc-CCe-EEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999997766665 46666655 677 99999998877 688999999999987543
No 216
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=9.1e-18 Score=179.80 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=105.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc-------cccc---------------------cccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGL---------------------HILSSE 446 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-------q~G~---------------------~vpa~~ 446 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|...
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 35689999998 889999999999999999999997764322 0121 122100
Q ss_pred c--cccchhhHH-------------------------hhhcCchhhHhhhhhhhhHHHH-HHHHHHHhC---------CC
Q 003747 447 Y--AKVPWFDSV-------------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQS---------TS 489 (798)
Q Consensus 447 ~--~~i~~~~~i-------------------------~~~ig~~~si~~~lstfs~~~~-ri~~il~~a---------~~ 489 (798)
. ....+.+.+ +..++.........+++|++++ ++..+.+++ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 0 011112221 1122222223334456776665 445555556 49
Q ss_pred CeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 490 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 490 psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|++|||||||+|||+.....+.. ++..+.+. |.| ||++||+.+.. .+|+++..+.+|++....
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~t-viiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLG-VLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999977777765 55556554 787 99999998876 589999999999987643
No 217
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=3.5e-18 Score=172.04 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhH
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 475 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~ 475 (798)
..+..++ +. +.|++++|+||||||||||||+|+++.... .|...-. ...+++..+. . .+|+
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~--g~~i~~~~q~---------~-----~LSg 74 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWD--GITPVYKPQY---------I-----DLSG 74 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEEC--CEEEEEEccc---------C-----CCCH
Confidence 4455553 45 678999999999999999999996554322 2322111 1112221110 0 0665
Q ss_pred HH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-CcEEEEEecchhHHh-hhccccceeee
Q 003747 476 HL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKT-LKYSNDFFENA 548 (798)
Q Consensus 476 ~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g-~t~VIitTHd~el~~-~a~~~~~l~ng 548 (798)
++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+...+ .| +|++||+.+... +|+++..+.++
T Consensus 75 Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR-AIRRLSEEGKKT-ALVVEHDLAVLDYLSDRIHVFEGE 148 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHcCCCE-EEEEECCHHHHHHhCCEEEEEcCC
Confidence 54 55666667789999999999999999977777765 555555554 77 999999988765 77777666543
No 218
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=178.73 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=106.7
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc---cccch
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVPW 452 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~---~~i~~ 452 (798)
.++.+++++ ..|++++|+||||||||||+++|+++.... .| .++|.... ....+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF-EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 588999999 889999999999999999999997653211 11 12222100 01111
Q ss_pred hhHH---------------------hhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FDSV---------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~~i---------------------~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+++ +..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1221 1222333333334456776654 55566677899999999999999999777777
Q ss_pred HHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.. ++..+.+. |.| ||++||+.+....|+++..+.+|.+..++
T Consensus 180 ~~-~l~~l~~~~g~t-iil~sH~~~~~~~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 180 MR-VIHEIKEKYQLT-VLSITHDLDEAASSDRILVMKAGEIIKEA 222 (277)
T ss_pred HH-HHHHHHHhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEeC
Confidence 55 66666654 887 99999999888789999999999987543
No 219
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.74 E-value=1.3e-17 Score=183.32 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=107.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc----
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~---- 447 (798)
..+..+++|+ ..|++++|+||||||||||+|+|+++.... .| .+++....
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~-~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 4688999999 889999999999999999999997643211 11 12221100
Q ss_pred cccchhhHH-----------------------hhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 448 AKVPWFDSV-----------------------FADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 448 ~~i~~~~~i-----------------------~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
....+.+++ +..++.. +........+|++++ ++..+.+++.+|+|||+||||+||
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 011111221 2223331 223344456777664 566666789999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+.. ++..+.+ .|.| +|++|||+++.. +|+++..+.+|.+..++
T Consensus 193 D~~~~~~i~~-lL~~l~~~~~~t-il~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 193 DVSIQAQVVN-LLQQLQREMGLS-LIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred CHHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9977777655 6666665 4887 999999998885 89999999999987543
No 220
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.74 E-value=1.3e-17 Score=177.97 Aligned_cols=155 Identities=13% Similarity=0.141 Sum_probs=106.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------ccccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEYAK-- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~~~-- 449 (798)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|......
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 5689999999 88999999999999999999999765321 1121 112100000
Q ss_pred --cchh----------------------hHHhhhcCch-hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 450 --VPWF----------------------DSVFADIGDE-QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 450 --i~~~----------------------~~i~~~ig~~-~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
.... ..++..++.. .........+|++ .+++..+.+++.+|++|||||||+|||
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 0001 1122223332 2334444556754 456666778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+.. +++.+.+ .|.| +|++||+.+.. .+|+++..+.+|.+..++
T Consensus 184 ~~~~~~~~~-~l~~~~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 184 LVLQAGVIR-LLKKLQQQFGTA-CLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHH-HHHHHHHHcCcE-EEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 966666654 5656655 4777 99999998877 489999999999987654
No 221
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.2e-18 Score=176.10 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=104.5
Q ss_pred hhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----------------------ccccccc----
Q 003747 391 SALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------------KSGLHIL---- 443 (798)
Q Consensus 391 ~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----------------------q~G~~vp---- 443 (798)
.+..+++.++.|++++ +.|+-++|+|||||||||||+++++-.... .+|..-+
T Consensus 38 ~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~ 117 (257)
T COG1119 38 SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117 (257)
T ss_pred EEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHh
Confidence 3445678999999999 888889999999999999999996432211 0111000
Q ss_pred ---ccc----------ccccch------------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEec
Q 003747 444 ---SSE----------YAKVPW------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 497 (798)
Q Consensus 444 ---a~~----------~~~i~~------------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDE 497 (798)
... ...+++ ...++..+|...-....+.++|-++ +++..+.+++.+|.||||||
T Consensus 118 ~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE 197 (257)
T COG1119 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE 197 (257)
T ss_pred hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC
Confidence 000 000111 1123344455555555666777554 55555567799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 498 IGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|++|+|......+.. .+..+... +.+.+|+|||+.+.. ...++...+.+|.+...
T Consensus 198 P~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 198 PAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred ccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 999999966666655 55555543 444489999987665 45566667777777653
No 222
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=176.21 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=105.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc---------------------ccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL---------------------HILSSEY--A 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~---------------------~vpa~~~--~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|.... .
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 4688999999 88999999999999999999999876432 11221 1121000 0
Q ss_pred ccchhhHH-----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 449 KVPWFDSV-----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 449 ~i~~~~~i-----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
...+.+.+ +..++.. .........+|+++ +++..+.+++.+|++|||||||+
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~ 175 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175 (250)
T ss_pred CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 01111221 1112221 11233345677655 55666667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|+.....+.. ++..+.. +.| +|++||+.+.. .+|+++..+.+|.+..++
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 176 NLDPENTAKIES-LFLELKK-DMT-IVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred cCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 999977777655 5555654 777 99999998876 689999999999987653
No 223
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.8e-18 Score=168.54 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=116.7
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc-------------------------------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------------------------- 442 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v------------------------------- 442 (798)
+++.|..++++. +.|.++.|+||||+||||||-+++.+..+...-..+
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 467899999999 899999999999999999999987543322210000
Q ss_pred ----------ccccccccc-----hhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH-HhCCCCeEEEEecCCCCCChHH
Q 003747 443 ----------LSSEYAKVP-----WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 443 ----------pa~~~~~i~-----~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il-~~a~~psLLLLDEP~sGlDp~e 506 (798)
|- ...++. ..++.+..+..++--.+.+..+||++++.+.+. ..+++.+++|||||.++||...
T Consensus 92 V~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkH 170 (252)
T COG4604 92 VRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170 (252)
T ss_pred HHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHH
Confidence 11 011111 112334445555556677788898887777665 4589999999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
..++.. +++.+. +.|.| |++|-||.+++. |+|.++.+.||.+...+
T Consensus 171 sv~iMk-~Lrrla~el~Kt-iviVlHDINfAS~YsD~IVAlK~G~vv~~G 218 (252)
T COG4604 171 SVQIMK-ILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQG 218 (252)
T ss_pred HHHHHH-HHHHHHHHhCCe-EEEEEecccHHHhhhhheeeecCCEEEecC
Confidence 999865 666655 56888 999999999996 99999999999998654
No 224
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=9.5e-18 Score=178.78 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=103.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh-h---ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-M---AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~-~---aq~G~-----------------------~vpa~~~ 447 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. ++|. ..
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 111 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ-KP 111 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec-CC
Confidence 35689999999 8899999999999999999999977531 1 12221 1111 00
Q ss_pred ccc--chhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~~i--~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
..+ ...+.+. ..++.. .........+|+++ +++..+.+++.+|++||||||
T Consensus 112 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 191 (268)
T PRK14248 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEP 191 (268)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 000 1111111 111110 11223344567655 556666677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 192 t~~LD~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 192 ASALDPISNAKIE-ELITELKE-EYS-IIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred CcccCHHHHHHHH-HHHHHHhc-CCE-EEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997777765 46666654 566 99999998765 689999999999987654
No 225
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=1.1e-17 Score=176.59 Aligned_cols=145 Identities=20% Similarity=0.156 Sum_probs=98.2
Q ss_pred eeeeEEEC------CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------ccccccccc--ccchh--------
Q 003747 399 VPIDIFIA------RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEYA--KVPWF-------- 453 (798)
Q Consensus 399 V~~disL~------~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------~~vpa~~~~--~i~~~-------- 453 (798)
...+|+|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 44555555 268999999999999999999997754321 12 122321100 01111
Q ss_pred ---------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cC
Q 003747 454 ---------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SG 522 (798)
Q Consensus 454 ---------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g 522 (798)
..++..++..+......+.+|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++..+.. .|
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~ 166 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK-VIRRFAENNE 166 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcC
Confidence 123344555555556667788655 56667778899999999999999999977777755 5555554 47
Q ss_pred CcEEEEEecchhHHh-hhcccccee
Q 003747 523 SLLTIATTHHGELKT-LKYSNDFFE 546 (798)
Q Consensus 523 ~t~VIitTHd~el~~-~a~~~~~l~ 546 (798)
.| ||++||+.++.. +|+++..+.
T Consensus 167 ~t-iiivsHd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 167 KT-AFVVEHDIIMIDYLADRLIVFE 190 (246)
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEc
Confidence 87 999999988775 788776653
No 226
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=176.31 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=104.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--hccccc---------------------cccccccc-ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--MAKSGL---------------------HILSSEYA-KVP 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~aq~G~---------------------~vpa~~~~-~i~ 451 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. .+..|. ++|..... ...
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 4688999999 8899999999999999999999987632 112221 12210000 001
Q ss_pred hhhH-----------------------HhhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 452 WFDS-----------------------VFADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 452 ~~~~-----------------------i~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
+.+. ++..++.. +........+|+++ +++..+.+++.+|+++||||||+|+|
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1111 12222221 11222334566554 56666677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+.. ++..+.. +.| +|++||+.+.. .+|+++..+.+|++..++
T Consensus 175 ~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 175 PISSGVIEE-LLKELSH-NLS-MIMVTHNMQQGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHHHH-HHHHHhC-CCE-EEEEecCHHHHHhhCcEEEEEECCEEEEEC
Confidence 977666654 5555654 777 99999998865 689999999999997543
No 227
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=9.5e-18 Score=172.16 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=96.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------ccccccc--cccchhh-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------HILSSEY--AKVPWFD- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------~vpa~~~--~~i~~~~- 454 (798)
..++.+++|+ ..|++++|+||||||||||+++|+++.... .|. +++.... ......+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 4689999999 889999999999999999999997653211 121 1111000 0011111
Q ss_pred ----------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Q 003747 455 ----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517 (798)
Q Consensus 455 ----------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~ 517 (798)
.++..+|..+........+|+++ +++..+.+++.+|++|||||||+|+|+.....+. .++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA-ELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 12233344433344455677655 5566666779999999999999999997777765 46666
Q ss_pred HHhcCCcEEEEEecchhHHhhhccccc
Q 003747 518 FAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 518 L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
+.+.|.| +|++||+.+.... ++++.
T Consensus 173 ~~~~~~t-iii~sH~~~~~~~-~~~~~ 197 (207)
T PRK13539 173 HLAQGGI-VIAATHIPLGLPG-ARELD 197 (207)
T ss_pred HHHCCCE-EEEEeCCchhhcc-CcEEe
Confidence 6667887 9999999887654 44433
No 228
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=1e-17 Score=172.89 Aligned_cols=149 Identities=12% Similarity=0.035 Sum_probs=99.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------cccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYA-- 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------~vpa~~~~-- 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++... ..|. +++. ...
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQ-KPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEEEEcC-CCccc
Confidence 4688999999 88999999999999999999999765421 1121 1111 000
Q ss_pred ccchhhHH--------------hhhcCchhhH-----------hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 449 KVPWFDSV--------------FADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 449 ~i~~~~~i--------------~~~ig~~~si-----------~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
.....+.+ ...++....+ ......+|+++ +++..+.+++.+|++|||||||+||
T Consensus 92 ~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 171 (218)
T cd03290 92 NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccc
Confidence 00111111 1111111111 11234577655 5566666779999999999999999
Q ss_pred ChHHHHHHHHH-HHHHHHhcCCcEEEEEecchhHHhhhccccceeee
Q 003747 503 NPLEGTALGMS-LLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 548 (798)
Q Consensus 503 Dp~eg~al~~a-ll~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng 548 (798)
|+.....+... +++.+.+.|.| +|++||+.+...+|+++..+.+|
T Consensus 172 D~~~~~~l~~~~ll~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 172 DIHLSDHLMQEGILKFLQDDKRT-LVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCE-EEEEeCChHHHhhCCEEEEecCC
Confidence 99777777653 67777777887 99999998887778777766655
No 229
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=182.66 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=107.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc------------------------cccccccc---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEYA--- 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------------------~vpa~~~~--- 448 (798)
..++.+++|+ ..|++++|+||||||||||+++|+++... ..|. ++|.....
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 4689999999 88999999999999999999999765321 1121 22211000
Q ss_pred -ccchh----------------------hHHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 449 -KVPWF----------------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 449 -~i~~~----------------------~~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
.+.+. ..++..+|+. +........+|+++ +|+..+.+++.+|+|||+||||+|||
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 00000 1122333442 22344445677766 45666677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
+.....+.. ++..+.+ .|.| +|++|||..+.. +|+++..+.+|.+...+
T Consensus 187 ~~~~~~i~~-lL~~l~~~~g~t-il~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 187 VSVQAQVLN-LMMDLQQELGLS-YVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 977777765 5555654 5887 999999998885 89999999999997543
No 230
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8.4e-18 Score=194.66 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=108.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------cccccc-----cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSE-----YA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~-----~~ 448 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++...+..|. ++|... ..
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 4588899999 8899999999999999999999987643111111 122110 00
Q ss_pred ccchhh--------------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCC
Q 003747 449 KVPWFD--------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 449 ~i~~~~--------------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~s 500 (798)
.+.+.+ .++..++.. +.......++|++++ ++..+.+++.+|++|||||||+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 011111 112223332 233444567776665 5555667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|++.++.
T Consensus 435 ~LD~~~~~~l~-~~l~~l~~~g~t-vi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 435 GIDVGAKYEIY-KLINQLVQQGVA-IIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred CcCHhHHHHHH-HHHHHHHHCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99997776664 577777777887 99999998776 689999999999987644
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=175.85 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=104.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||||||||+|+|+++.. . +..|. ++|. ...
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 96 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ-KPN 96 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEec-Ccc
Confidence 4688999999 8899999999999999999999987642 1 11221 1221 100
Q ss_pred cc--chhhHH-----------------------hhhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 449 KV--PWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 449 ~i--~~~~~i-----------------------~~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
.+ .+.+++ +..++... .+......+|+++ +++..+.+++.+|++||||||
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 111111 12222211 1222334566554 556666677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+. .++..+. .|.| ||++||+.+.. .+|+++..+.+|++....
T Consensus 177 t~~LD~~~~~~l~-~~l~~~~-~~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 177 CSALDPVATNVIE-NLIQELK-KNFT-IIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred CccCCHHHHHHHH-HHHHHHh-cCCe-EEEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 9999997666664 4666665 4777 99999998876 589999999999987643
No 232
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=6.3e-17 Score=192.28 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=102.3
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------cccccc----ccccchh------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE----YAKVPWF------ 453 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~----~~~i~~~------ 453 (798)
+++.++.+++|+ ..|++++|+||||||||||||+|++...+. .|. +++... ...+.++
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 345789999999 889999999999999999999997753221 121 111100 0001110
Q ss_pred ---------------------------------------hHHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeE
Q 003747 454 ---------------------------------------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSL 492 (798)
Q Consensus 454 ---------------------------------------~~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psL 492 (798)
..++..+|.. ......+++||++++ ++..+.+++.+|+|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~l 170 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL 170 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCE
Confidence 0112233433 234456678887765 55555677999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 493 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 493 LLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
|||||||+|||+.....+ .+.|.+.+.| ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 LLLDEPtn~LD~~~~~~L----~~~L~~~~~t-viivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 171 LLLDEPTNHLDLDAVIWL----EKWLKSYQGT-LILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred EEEcCCCCcCCHHHHHHH----HHHHHhCCCe-EEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999655443 3344455677 99999998876 588888888888774
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.74 E-value=7.5e-18 Score=174.72 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=99.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~ 452 (798)
..++.++++. ..|++++|+||||||||||+++|+++.... .|. ++|. .... ..+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~l~~~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-GGQVLLDGKPISQYEHKYLHSKVSLVGQ-EPVLFARSL 104 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCCchHHcCHHHHHhhEEEEec-ccHHHhhhH
Confidence 3588999999 889999999999999999999997653221 121 1111 0000 001
Q ss_pred hhHH------------------------hhhc--CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSV------------------------FADI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i------------------------~~~i--g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+ +..+ |....+......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1111 1111 22222333345567555 5666666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 549 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~ 549 (798)
....+.. ++..+.+ +.| +|++||+.++...|+++..+.+|.
T Consensus 185 ~~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 185 SEQQVQQ-ALYDWPE-RRT-VLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred HHHHHHH-HHHHHcC-CCE-EEEEECCHHHHHhCCEEEEecCCc
Confidence 7777655 5555554 566 999999998887788888777765
No 234
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=175.87 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=103.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 4689999999 889999999999999999999998764321 1221 1111000
Q ss_pred -cccchhhHHh-----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 -AKVPWFDSVF-----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 -~~i~~~~~i~-----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
....+.+.+. ..++.. .........+|+++ +++..+.+++.+|++||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0011111111 111111 11222334566554 566666678899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++....
T Consensus 177 ~~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 177 TANIDPVGTAKIEE-LLFELKK-EYT-IVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred CccCCHHHHHHHHH-HHHHHhh-CCE-EEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999977666654 5556654 577 99999998875 689999999999987643
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=182.17 Aligned_cols=156 Identities=9% Similarity=0.057 Sum_probs=107.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh---cccc-------------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~---aq~G-------------------------~~vpa~~~ 447 (798)
..++.+++|+ ..|++++|+||||||||||+|+|+++.-. ...| .++|....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 4689999999 89999999999999999999999766421 1111 12222110
Q ss_pred c----ccchhhH---------------------------HhhhcCchh---hHhhhhhhhhHHHH-HHHHHHHhCCCCeE
Q 003747 448 A----KVPWFDS---------------------------VFADIGDEQ---SLSQSLSTFSGHLK-QIGNIISQSTSQSL 492 (798)
Q Consensus 448 ~----~i~~~~~---------------------------i~~~ig~~~---si~~~lstfs~~~~-ri~~il~~a~~psL 492 (798)
. ...+.++ ++..+|+.+ ........+|++++ ++..+.+++.+|+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 0 0001111 122233321 12233456776664 56666678999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 493 VLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 493 LLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
||+||||+|||+.....+.. ++..+.+ .|.| +|++|||+++. .+|+++..+.+|++..++
T Consensus 180 lilDEPts~LD~~~~~~i~~-lL~~l~~~~g~t-ii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTT-ILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999977777755 6666665 4887 99999998888 589999999999987543
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.1e-17 Score=192.92 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=108.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i 450 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 34688999999 889999999999999999999997653221 111 2221000 001
Q ss_pred chhhH------------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 451 PWFDS------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 451 ~~~~~------------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+. ++..++..........++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 11111 12223333333444567786655 555666778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 169 ~~~~l~~-~l~~l~~~g~t-vii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 169 EVNHLFT-IIRKLKERGCG-IVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHHH-HHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 7777654 66677777887 99999998776 58999999999998764
No 237
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=175.26 Aligned_cols=155 Identities=18% Similarity=0.282 Sum_probs=103.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~~ 448 (798)
..+.++++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|.....
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 4688999999 889999999999999999999997764321 1221 11110000
Q ss_pred -ccchhhHHh----------------------hhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 449 -KVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 449 -~i~~~~~i~----------------------~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
...+.+.+. ..++. .+........+|+++ +++..+.+++.+|++|||||||+
T Consensus 100 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 179 (254)
T PRK14273 100 FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 (254)
T ss_pred ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 011112111 01111 111222334566655 55666667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 180 ~LD~~~~~~l~~-~l~~~~~-~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 180 ALDPISTGKIEE-LIINLKE-SYT-IIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred ccCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999977777655 5656654 677 89999998876 689999999999987653
No 238
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.3e-17 Score=172.53 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=105.3
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------------------ccccccccccc---chhh-
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYAKV---PWFD- 454 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------------------~~vpa~~~~~i---~~~~- 454 (798)
+..+++++ ..|++++|+||||+||||||++|+++.... .| .++|. ....+ .+.+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~-~G~v~i~g~~~~~~~~~~~~i~~~~q-~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRDISYVPQ-NYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcCcCChhHcCEEEEee-cCccCCCccHHHH
Confidence 78899998 889999999999999999999997653221 12 11121 00000 1111
Q ss_pred --------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 455 --------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 455 --------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
..+..++....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~-~ 170 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR-E 170 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH-H
Confidence 11223444444445555677555 5666667789999999999999999997666665 4
Q ss_pred HHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 514 LLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 514 ll~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
++..+.. .|.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 171 ~l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 171 ELKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 5656655 4887 99999998875 58999999999998754
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1.2e-17 Score=192.84 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=107.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-ccccc----------------------ccccccc--cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--AK 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~----------------------~vpa~~~--~~ 449 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++... +..|. ++|.... ..
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 34689999999 88999999999999999999999876432 11221 1121000 00
Q ss_pred cchhhHH-------------------------hhhcCchhhH-hhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 450 VPWFDSV-------------------------FADIGDEQSL-SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 450 i~~~~~i-------------------------~~~ig~~~si-~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.+.+.+ +..++..... .....++|++++ ++..+.+++.+|++|||||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 1111111 2222222211 233567887665 555566778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|+.....+.. ++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+...
T Consensus 173 D~~~~~~l~~-~l~~l~~~g~t-viiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 173 TEKETEILLD-IIRDLKAHGVA-CVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHH-HHHHHHhCCCE-EEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9977777654 66677777887 99999998776 58999999999998654
No 240
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.5e-17 Score=173.50 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=102.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh-hc---cccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~-~a---q~G~-----------------------~vpa~~~- 447 (798)
+.+..+++|+ ..|++++|+|||||||||||++|+++.. .+ ..|. ++|....
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 4688999999 8899999999999999999999976531 11 1221 1121000
Q ss_pred cccchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 AKVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~~i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
....+.+.+. ..++.. +........+|+++ +++..+.+++.+|++|||||||+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 98 FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0011122211 011110 11122334566555 55666667889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+.. +.| ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 178 ~LD~~~~~~l~~-~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 178 ALDPISAGKIEE-TLLGLKD-DYT-MLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred ccCHHHHHHHHH-HHHHHhh-CCe-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999977777654 6666654 576 99999998754 689999999999987653
No 241
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=175.88 Aligned_cols=154 Identities=20% Similarity=0.283 Sum_probs=103.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++... + ..|. ++|. ...
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~~ 103 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQ-KGN 103 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEec-CCc
Confidence 4689999999 88999999999999999999999876431 1 1231 1111 000
Q ss_pred cc--chhhHH----------------------hhhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 KV--PWFDSV----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~i--~~~~~i----------------------~~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+ .+++.+ +..++..+ .+......+|+++ +++..+.+++.+|+++||||||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00 111111 11112211 1222334566555 5566666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|++..++
T Consensus 184 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 184 SALDPVSTRKIE-ELILKLKE-KYT-IVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999997666664 46666654 677 89999998775 689999999999997654
No 242
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1e-17 Score=193.56 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=107.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--cc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AK-- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~-- 449 (798)
..+..+++|+ ..|++++|+||||||||||||+|+++..++..|. ++|.... ..
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4588899998 8899999999999999999999987643211121 1111000 00
Q ss_pred -cch--------------------------hhHHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCC
Q 003747 450 -VPW--------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 450 -i~~--------------------------~~~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~s 500 (798)
+.. +..++..++... .....+.++|++++ ++..+.+++.+|++|||||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 000 011223333321 23444567776665 5555667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 433 ~LD~~~~~~l~-~~l~~l~~~g~t-viivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 433 GVDVGAKYEIY-KLINQLAQEGVA-IIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred CcCHhHHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99996666664 577778777887 99999998766 589999999999987644
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=175.86 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=105.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ...|. ++|. ..
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 110 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ-RP 110 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEec-CC
Confidence 35689999999 88999999999999999999999876532 12231 1121 00
Q ss_pred cc--cchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 AK--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~~--i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
.. ..+.+++. ..++.. +.+......+|+++ +++..+.+++.+|++||||||
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 01111111 111111 11223345677655 556666678999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+.. ++..+.+ +.+ ||++||+.+.. .+|+++..+.+|++...+
T Consensus 191 t~~LD~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 191 ASALDPISTMQLEE-TMFELKK-NYT-IIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred cccCCHHHHHHHHH-HHHHHhc-CCE-EEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999977666654 5566654 676 99999998775 689999999999997653
No 244
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=177.61 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=103.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++.. . +..|. ++|. ...
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 130 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ-KPN 130 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECC-CCC
Confidence 4588999999 8899999999999999999999987531 1 12231 1111 000
Q ss_pred cc--chhhHH----------------------hhhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 KV--PWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~i--~~~~~i----------------------~~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+ .+.+.+ +..++. .+........+|+++ +++..+.+++.+|++|||||||
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 111111 111111 112233345667555 5566666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+.. +.+ ||++||+.+.. .+|+++..+.+|++..++
T Consensus 211 ~gLD~~~~~~l~~-~L~~~~~-~~t-vIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 211 SALDPKATAKIED-LIQELRG-SYT-IMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999977666654 5556654 566 99999998876 589999999999987653
No 245
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.73 E-value=1.8e-17 Score=169.35 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=96.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------cccccccc--ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEYA--KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~~~--~i~~ 452 (798)
+..++.+++++ ..|++++|+||||+||||||++|+++.... .|. ++|..... ....
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 34688899998 889999999999999999999997653211 111 11110000 0111
Q ss_pred h---------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 453 F---------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 453 ~---------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
. ..++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+.....+.. ++.
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~ 169 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE-AMA 169 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Confidence 1 122333444444445556777655 45666667799999999999999999977777654 665
Q ss_pred HHHhcCCcEEEEEecchh-HHhhhccc
Q 003747 517 AFAESGSLLTIATTHHGE-LKTLKYSN 542 (798)
Q Consensus 517 ~L~~~g~t~VIitTHd~e-l~~~a~~~ 542 (798)
.+.+.|.| +|++||+.. +..++++.
T Consensus 170 ~~~~~g~t-iii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 170 GHCARGGM-VVLTTHQDLGLSEAGARE 195 (201)
T ss_pred HHHhCCCE-EEEEecCchhhhhcccee
Confidence 66666887 899999754 44565554
No 246
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.9e-17 Score=173.18 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=103.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~~ 448 (798)
+.++.+++++ ..|++++|+||||+|||||||+|+++... +..|. ++|. ...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q-~~~ 95 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ-KPN 95 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEec-CCC
Confidence 4688999999 88999999999999999999999876422 12231 1111 000
Q ss_pred c--cchhhHHh----------------------hhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ....+.+. ..++. ..........+|+++ +++..+.+++.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 01111111 11111 111223344566555 5566666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 176 ~~LD~~~~~~l~~-~L~~~~~-~~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 176 SALDPISTLKIED-LMVELKK-EYT-IVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCe-EEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 9999977777654 6666665 566 89999998875 689999999999987653
No 247
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3e-17 Score=172.93 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=103.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~- 447 (798)
..++.+++|+ ..|++++|+||||+|||||||+|+++... +..|. ++|....
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 4688999999 88999999999999999999999875421 11221 1111000
Q ss_pred cccchhhHHh----------------------hhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 AKVPWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~~i~~~~~i~----------------------~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
......+.+. ..++..+ ........+|+++ +++..+.+++.+|+++||||||+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~ 175 (250)
T PRK14262 96 FPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 0001111110 1111111 1223334566554 56666677899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+.+ +.| +|++||+.+. ..+++++..+.+|.+...+
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~-~~t-ili~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 176 ALDPIATQRIEK-LLEELSE-NYT-IVIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred ccCHHHHHHHHH-HHHHHhc-CcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999977776654 5555654 676 9999999885 5689999999999997653
No 248
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3e-17 Score=173.00 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=103.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~- 447 (798)
..++.+++++ ..|++++|+||||||||||||+|+++... +..|. +++....
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 4688899998 88999999999999999999999876531 12231 1111000
Q ss_pred cccchhhHH----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~~i~~~~~i----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
....+.+.+ +..++.. .........+|+++ +++..+.+++.+|+++|||||++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 97 FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 000111111 1111221 11233345566554 55666667899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 177 ~LD~~~~~~l~~-~l~~~~~-~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 177 ALDPISSSEIEE-TLMELKH-QYT-FIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred cCCHHHHHHHHH-HHHHHHc-CCe-EEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999977666654 5555544 677 99999998875 68999999999998754
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=8.1e-17 Score=186.04 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=99.4
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------cccccc--ccccchhh-------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE--YAKVPWFD------- 454 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~--~~~i~~~~------- 454 (798)
+++.++.++++. ..|+.++|+|+||+|||||||+|++...... |. +++... .....+++
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~-G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS-GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC-CeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhH
Confidence 567889999998 7778899999999999999999976442211 21 111100 00001111
Q ss_pred --------------------------------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCC
Q 003747 455 --------------------------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTS 489 (798)
Q Consensus 455 --------------------------------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~ 489 (798)
.++..+|..+. ...++++||+.+ |+..+.++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~ 171 (530)
T COG0488 93 ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEE 171 (530)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcC
Confidence 11222333333 566788887665 56666677999
Q ss_pred CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEE
Q 003747 490 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACM 550 (798)
Q Consensus 490 psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v 550 (798)
|++|||||||+.||... +. .+-++|..+.+| +|+||||.+|.. .|.++..+.+|.+
T Consensus 172 pDlLLLDEPTNHLD~~~---i~-WLe~~L~~~~gt-viiVSHDR~FLd~V~t~I~~ld~g~l 228 (530)
T COG0488 172 PDLLLLDEPTNHLDLES---IE-WLEDYLKRYPGT-VIVVSHDRYFLDNVATHILELDRGKL 228 (530)
T ss_pred CCEEEEcCCCcccCHHH---HH-HHHHHHHhCCCc-EEEEeCCHHHHHHHhhheEEecCCce
Confidence 99999999999999833 22 244566666557 999999999985 7777777766643
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.6e-17 Score=192.17 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=107.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------ccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~--~~i 450 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..+. .|. ++|.... ..+
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 34689999999 889999999999999999999997653221 111 1221000 001
Q ss_pred chhhH------------------------HhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 451 PWFDS------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 451 ~~~~~------------------------i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+. ++..++.........+++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 11111 12223333233344567776654 566666779999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|++..+
T Consensus 175 ~~~~l~-~~l~~~~~~g~t-iiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 175 EIEQLF-RVIRELRAEGRV-ILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 776665 466667777887 99999998776 58999999999998653
No 251
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2.3e-17 Score=168.34 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=96.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------ccccccc--cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~~--~~i~~~ 453 (798)
..++.+++++ ..|++++|+|||||||||||++|+++.... .|. ++|.... ....+.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 4689999999 889999999999999999999997653211 110 1111000 001111
Q ss_pred h----------------HHhhhcCchhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 454 D----------------SVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 454 ~----------------~i~~~ig~~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
+ .++..++..+........+|++ .+++..+.+++.+|++|||||||+|+|+.....+.. ++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~-~l~ 171 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT-KIQ 171 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHH
Confidence 1 1222333333334444567754 556777778899999999999999999977777655 555
Q ss_pred HHHhcCCcEEEEEecchhHHhhhcc
Q 003747 517 AFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 517 ~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
.+.+.|.| +|++||+.++..-+|.
T Consensus 172 ~~~~~~~t-iii~sh~~~~~~~~d~ 195 (200)
T PRK13540 172 EHRAKGGA-VLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHHcCCE-EEEEeCCchhccccch
Confidence 66667887 9999999888765543
No 252
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.2e-17 Score=193.07 Aligned_cols=154 Identities=13% Similarity=0.037 Sum_probs=107.4
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------ccccccc-----ccc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSE-----YAK 449 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~-----~~~ 449 (798)
.+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++|... ...
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT-AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC-CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 478888988 889999999999999999999997543111 01 0122100 000
Q ss_pred cchhh---------------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCC
Q 003747 450 VPWFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 450 i~~~~---------------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~s 500 (798)
...++ .++..++.. +.......++|++++ ++..+.+++.+|+||||||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 11111 122333442 334445567787665 5555667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+.....+.. ++..+.+.|.| ||++|||.++. .+|+++..+.+|.+.+..
T Consensus 426 ~LD~~~~~~l~~-~l~~l~~~g~t-viivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 426 GIDVGAKHEIYN-VIYELAAQGVA-VLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred CCCHhHHHHHHH-HHHHHHhCCCE-EEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999977777754 66677888888 99999998877 589999999999987654
No 253
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.72 E-value=2.3e-17 Score=170.87 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------------------cccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILSSE 446 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------------------~vpa~~ 446 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|. .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q-~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ-F 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec-c
Confidence 3688999999 88999999999999999999999765321 1121 1121 0
Q ss_pred cccc---chhh---------------------HHhhhcCchhhH-hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 447 YAKV---PWFD---------------------SVFADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 447 ~~~i---~~~~---------------------~i~~~ig~~~si-~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
.... ...+ .++..++..+.. ......+|+++ +++..+.+++.+|++|||||||+
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 178 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTA 178 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0000 0000 112223332221 23345566554 55666667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccce
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFF 545 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l 545 (798)
|+|+.....+.. ++..+.+.|.| ||++||+.++.. +|+++..+
T Consensus 179 ~LD~~~~~~l~~-~l~~~~~~g~t-ii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 179 SLDAANRQVVVE-LIAEAKARGAA-LIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred cCCHHHHHHHHH-HHHHHHhcCCE-EEEEeCCHHHHHHhcceeEec
Confidence 999977777654 66666767887 999999988774 78766543
No 254
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.3e-17 Score=193.30 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=106.3
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------ccccccccc--cc---cc
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSE--YA---KV 450 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------~G~~vpa~~--~~---~i 450 (798)
++.+++|+ ..|++++|+||||||||||||+|+++..... .| ++|... .. .+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA-YITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE-EccCccccCCCcCCC
Confidence 78889988 8899999999999999999999976532110 11 222210 00 01
Q ss_pred chhh------------------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecC
Q 003747 451 PWFD------------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 451 ~~~~------------------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP 498 (798)
.+++ .++..++.. +........+|++++ ++..+.+++.+|++||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1111 122334443 334445567786654 56666677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|+|||+.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+...
T Consensus 437 t~~LD~~~~~~l~-~~l~~l~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 437 TRGIDVGAKAEIY-KVMRQLADDGKV-ILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred CCCcCHHHHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999997766665 466677777887 99999998766 58999999999998653
No 255
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=173.23 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=103.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-----------------------~vpa~~~~ 448 (798)
..+.++++|+ ..|++++|+||||||||||||+|+++... + ..|. ++|. ...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~~ 94 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ-QPN 94 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEec-CCc
Confidence 4688999999 88999999999999999999999875321 1 1221 1121 100
Q ss_pred c--cchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ....+++. ..++.. ........++|+++ +++..+.+++.+|+++||||||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 11111111 011110 11122334567555 5666667789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+.. ++..+.. +.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 175 SALDPISTLKIEE-LIQELKK-DYT-IVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCe-EEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999977777654 5556654 677 99999998865 689999999999987654
No 256
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.3e-17 Score=174.84 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=101.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----cccccc-----------------------cccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGLH-----------------------ILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~~-----------------------vpa~~~- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... +..|.. ++....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 4688999999 88999999999999999999999876532 112311 111000
Q ss_pred -cccchhhHH----------------------hhhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 448 -AKVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 448 -~~i~~~~~i----------------------~~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
....+.+.+ +..++. .+........+|+++ +++..+.+++.+|+++||||||
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC 176 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 001111111 111121 112223335567555 5666667778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccee------eeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE------NACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~------ng~v~fd 553 (798)
+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+. +|++...
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~-~~t-viivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 177 SALDPISTLAIE-DLINELKQ-DYT-IVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999997777665 46666654 576 99999998775 6899888876 6777654
No 257
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.72 E-value=2.2e-17 Score=168.02 Aligned_cols=136 Identities=20% Similarity=0.191 Sum_probs=91.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------------------cccccccc--cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------------------~~vpa~~~--~~i~~ 452 (798)
+..++.+++|+ ..|++++|+||||||||||+|+|++.... ..| .++|.... .....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 35688999999 88999999999999999999999765321 111 12221000 00111
Q ss_pred hh-----------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 453 FD-----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 453 ~~-----------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
.+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~ 169 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA-GL 169 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 11 12233444444455566777655 5566666779999999999999999997666664 46
Q ss_pred HHHHHhcCCcEEEEEecchh
Q 003747 515 LEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~e 534 (798)
+..+.+.|.| +|++||+..
T Consensus 170 l~~~~~~~~t-ii~~sH~~~ 188 (198)
T TIGR01189 170 LRAHLARGGI-VLLTTHQDL 188 (198)
T ss_pred HHHHHhCCCE-EEEEEcccc
Confidence 6666667887 999999863
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.72 E-value=1.9e-17 Score=192.76 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=108.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------------------cccccccc----
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------------------~~vpa~~~---- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. ..| .++|....
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 4688999999 8899999999999999999999976531 111 12222100
Q ss_pred cccchhh-----------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 448 AKVPWFD-----------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 448 ~~i~~~~-----------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
....+.+ .++..++.. ........++|++++ ++..+.+++.+|++|||||||+||
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 0011111 122334443 234455567787665 556666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+.. ++..+.+ .|.| ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 457 D~~~~~~l~~-~l~~~~~~~~~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 457 DKTVQAQILA-LLKSLQQKHQLA-YLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred CHHHHHHHHH-HHHHHHHhhCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9977777755 6666665 4787 99999998776 589999999999987653
No 259
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.4e-17 Score=161.65 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=92.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccch--hhHHhhhcCchhhHhhhhhhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW--FDSVFADIGDEQSLSQSLSTF 473 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~--~~~i~~~ig~~~si~~~lstf 473 (798)
..+..+++++ .+|++++|+||||+|||||+++|+++.... .|..... ...+.. .......++.- ..+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~--~~~~~~~~~~~~~~~i~~~-------~ql 81 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILID--GKDIAKLPLEELRRRIGYV-------PQL 81 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEEC--CEEcccCCHHHHHhceEEE-------eeC
Confidence 3578888888 888999999999999999999997553322 2321110 000100 00111111110 115
Q ss_pred hHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeee
Q 003747 474 SGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENA 548 (798)
Q Consensus 474 s~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng 548 (798)
|++ .+++..+.+++.+|+++||||||+|+|+.....+.. ++..+...+.+ +|++||+.+... +|+++..+.+|
T Consensus 82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~-~l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE-LLRELAEEGRT-VIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCc
Confidence 654 455666667789999999999999999977777655 55556555677 999999988875 56777666554
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.72 E-value=2.9e-17 Score=190.71 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=107.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------LHILSSEY 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------------~~vpa~~~ 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|....
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 4689999999 889999999999999999999997653211 11 12222100
Q ss_pred --cccchhhH--------------------HhhhcCchh-----hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCC
Q 003747 448 --AKVPWFDS--------------------VFADIGDEQ-----SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 448 --~~i~~~~~--------------------i~~~ig~~~-----si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~ 499 (798)
..+.+.+. ++..++... ........+|++++ ++..+.+++.+|++|||||||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00111111 123334432 24455667887665 556666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+.+ .|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 456 ~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 456 GTMDPITKVDVTH-SILKAREEMEQT-FIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHcCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999977777755 5555654 4887 99999998876 589999999999987653
No 261
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.7e-17 Score=169.94 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=100.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
..+..++++. ..|++++|+||||+|||||||+|+++.... .|. ++|. ....+ .+
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~~~~~tv 98 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDISTIPLEDLRSSLTIIPQ-DPTLFSGTI 98 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEhHHCCHHHHHhhEEEEec-CCcccCccH
Confidence 3688899998 889999999999999999999997653221 121 1121 00000 11
Q ss_pred hhHHh--hhcCchhh------HhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 453 FDSVF--ADIGDEQS------LSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 453 ~~~i~--~~ig~~~s------i~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
.+.+. .... .+. +......+|+ +++++..+.+++.+|+++||||||+|+|+.....+.. ++..+. .|.
T Consensus 99 ~~~l~~~~~~~-~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~-~~~ 175 (207)
T cd03369 99 RSNLDPFDEYS-DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK-TIREEF-TNS 175 (207)
T ss_pred HHHhcccCCCC-HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHhc-CCC
Confidence 11110 0000 011 1123345665 4566777777899999999999999999977666544 555554 477
Q ss_pred cEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 524 LLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 524 t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
| +|++||+.+....++++..+.+|.+...
T Consensus 176 t-iii~th~~~~~~~~d~v~~l~~g~i~~~ 204 (207)
T cd03369 176 T-ILTIAHRLRTIIDYDKILVMDAGEVKEY 204 (207)
T ss_pred E-EEEEeCCHHHHhhCCEEEEEECCEEEec
Confidence 7 8999999888777888889999988643
No 262
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.3e-17 Score=192.01 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=102.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------cccccc--ccccch----------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE--YAKVPW---------- 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~--~~~i~~---------- 452 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|... ...+..
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 91 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTE 91 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHH
Confidence 35688999999 889999999999999999999997654221 111 122100 000000
Q ss_pred -------------------------------------------hhHHhhhcCchhhH-hhhhhhhhHHHH-HHHHHHHhC
Q 003747 453 -------------------------------------------FDSVFADIGDEQSL-SQSLSTFSGHLK-QIGNIISQS 487 (798)
Q Consensus 453 -------------------------------------------~~~i~~~ig~~~si-~~~lstfs~~~~-ri~~il~~a 487 (798)
+..++..+|..+.. ....+++|++++ ++..+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 11123334443322 234577887665 555556778
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
.+|++|||||||+|||+.....+.. + +.+.|.| ||++|||.++. .+|+++..+.+|++.
T Consensus 172 ~~p~lLlLDEPt~~LD~~~~~~l~~-~---l~~~~~t-iiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 172 SNPDILLLDEPTNNLDINTIRWLED-V---LNERNST-MIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHHHHHH-H---HHhCCCe-EEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 9999999999999999966665543 3 3456787 99999998876 589999999888874
No 263
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.72 E-value=3.7e-17 Score=179.79 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=106.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--cccc-------------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSGL-------------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--q~G~-------------------------~vpa~~~- 447 (798)
..++.+++|+ ..|++++|+|+||||||||+++|+++.-.. ..|. ++|....
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 4589999999 889999999999999999999997664321 1221 1221100
Q ss_pred c---ccchhhHH----------------------hhhcCchh---hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 A---KVPWFDSV----------------------FADIGDEQ---SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~---~i~~~~~i----------------------~~~ig~~~---si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
. .+.+.+++ +..++..+ .+......+|+++ +|+..+.+++.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00111111 12222221 1122345677666 566666778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+.. ++..+.+ .|.| +|++|||..+. .+|+++..+.+|.+...+
T Consensus 189 ts~LD~~~~~~i~~-lL~~l~~~~g~t-il~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 189 TTALDVTVQAQIMT-LLNELKREFNTA-IIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred CccCCHHHHHHHHH-HHHHHHHHcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999977777655 6666655 4787 99999999887 489999999999997643
No 264
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.72 E-value=1.8e-17 Score=192.07 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=106.1
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------c-cccccccc-----ccccc
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------S-GLHILSSE-----YAKVP 451 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~-G~~vpa~~-----~~~i~ 451 (798)
++.+++|+ ..|++++|+||||||||||||+|+++..... . -.|+|... .....
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 47788888 8899999999999999999999976532110 0 01223210 00001
Q ss_pred hhh------------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFD------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~------------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
..+ .++..++.. .......+.+|++++ ++..+.+++.+|+||||||||+|||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 111 122333443 334455567786665 555666778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|++...
T Consensus 438 ~~~~l~-~~l~~l~~~g~t-iIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 438 ARNDIY-QLIRSIAAQNVA-VLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 777765 466677777887 99999998877 58999999999998754
No 265
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.5e-17 Score=170.48 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=116.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------cccc---cccccc-----
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILS---SEYAKV----- 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------~vpa---~~~~~i----- 450 (798)
..++++|++|+ ..|+.++|+|+||||||||||+|+++..+.. |. +-|. .++..+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~-G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-ceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 45799999999 8899999999999999999999987654432 21 1111 000000
Q ss_pred c--------hhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 451 P--------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 451 ~--------~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
+ .++.|..--.+.+.+.+.+.++|++|. |++..++...+|++|||||..+--|+.-... +...+..+.++
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K-~~~rl~e~~~~ 196 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK-CLERLNELVEK 196 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH-HHHHHHHHHHc
Confidence 0 012222222345677888999999886 7888888899999999999999999955444 55667777677
Q ss_pred CCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 522 GSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 522 g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
+.| +|++|||++.. ++|++...+.+|.+.+.++
T Consensus 197 ~~t-iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~ 230 (249)
T COG1134 197 NKT-IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230 (249)
T ss_pred CCE-EEEEECCHHHHHHhcCeeEEEeCCEEEEcCC
Confidence 777 99999998766 6999999999999998763
No 266
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.4e-17 Score=171.92 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=103.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------ccccccc-
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY- 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~- 447 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. ++|....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 4689999999 8899999999999999999999987642 1 01221 1121000
Q ss_pred -cccchhhHH----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 448 -AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 448 -~~i~~~~~i----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
....+.+.+ +..++.. +........+|+++ +++..+.+++.+|++|||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 001111111 1112211 11122334566555 5566666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+.. +++.+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 177 ~gLD~~~~~~l~~-~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 177 SALDPISTLKIEE-LIEELKE-KYT-IIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCc-EEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999977666654 6666665 566 99999998876 689999999999987543
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.72 E-value=3.1e-17 Score=190.97 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=107.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-------------------------cccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-------------------------HILSSE 446 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-------------------------~vpa~~ 446 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|...
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 4689999999 889999999999999999999997765321 1221 112100
Q ss_pred cc-c---cchhh----------------------HHhhhcCchh---hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEe
Q 003747 447 YA-K---VPWFD----------------------SVFADIGDEQ---SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 496 (798)
Q Consensus 447 ~~-~---i~~~~----------------------~i~~~ig~~~---si~~~lstfs~~~-~ri~~il~~a~~psLLLLD 496 (798)
.. . ..+.+ ..+..++..+ ......+++|+++ +++..+.+++.+|++||||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 0 00000 1122233322 1234456777665 4566666779999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 497 EIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 497 EP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|||+|||+.....+.. ++..+... |.| ||++|||.+.. .+|+++..+.+|++..+
T Consensus 182 EPt~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 182 EPTTALDVSVQAQILQ-LLRELQQELNMG-LLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred CCCCccCHHHHHHHHH-HHHHHHHhcCCe-EEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999977777654 66666654 787 99999998876 58999999999998764
No 268
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.72 E-value=3.3e-17 Score=176.44 Aligned_cols=154 Identities=18% Similarity=0.084 Sum_probs=103.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------cccccccc-ccchhhHH----------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSEYA-KVPWFDSV---------- 456 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------~vpa~~~~-~i~~~~~i---------- 456 (798)
+.++.+++|+ ..|++++|+|||||||||||++|+++... ..|. ++|..... ...+.+.+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHH
Confidence 5689999999 88999999999999999999999765422 2221 22321000 00111211
Q ss_pred ----hhhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 457 ----FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 457 ----~~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
+..++....+. .....+|+++ +++..+.+++.+|+++||||||+|||+.....+...++..+.
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~- 207 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM- 207 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-
Confidence 11112221111 1123567554 566666678899999999999999999766666554555554
Q ss_pred cCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 521 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 521 ~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+.| ||++||+.+....|+++..+.+|.+.+.
T Consensus 208 ~~~t-IiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 208 ANKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 4677 8999999988888999999999998754
No 269
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.72 E-value=1.8e-17 Score=191.07 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=106.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------------------cccccccc--c--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEYA--K-- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------------------~vpa~~~~--~-- 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|++.......|. ++|..... .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 4588999999 8899999999999999999999987532111110 11110000 0
Q ss_pred cch-------------------------hhHHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 450 VPW-------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 450 i~~-------------------------~~~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
..+ ...++..++... .......++|++++ ++..+.+++.+|++|||||||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gL 432 (490)
T PRK10938 353 TSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGL 432 (490)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 000 011223344443 34455567786665 556666779999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh--hhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT--LKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~--~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+.. ++..+.+.+.++||++|||.++.. +|+++..+.+|.+....
T Consensus 433 D~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 433 DPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9977777754 666666665423899999988774 47888888999876544
No 270
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.72 E-value=2.9e-17 Score=170.57 Aligned_cols=145 Identities=21% Similarity=0.169 Sum_probs=96.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhccc---------------cccccccccc----ccchhhH------------
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---------------GLHILSSEYA----KVPWFDS------------ 455 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~---------------G~~vpa~~~~----~i~~~~~------------ 455 (798)
+.|++++|+||||||||||+|+|+++...... -.++|..... .....+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 46789999999999999999999765322110 1122221100 0111111
Q ss_pred -------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 456 -------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 456 -------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE-LFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHc
Confidence 1223343333344455677665 45666667899999999999999999977777755 56666667
Q ss_pred CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 522 GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 522 g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|.| +|++||+.+.. .+|+++..+ +|.+..++
T Consensus 163 ~~t-vii~sH~~~~~~~~~d~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 163 GTA-ILMTTHDLAQAMATCDRVVLL-NGRVIADG 194 (223)
T ss_pred CCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 887 99999998755 688888877 78887543
No 271
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6e-17 Score=171.02 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=102.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-----------------------~vpa~~~ 447 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++... + ..|. ++|. ..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~ 96 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQ-RP 96 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEec-CC
Confidence 35689999999 88999999999999999999999865321 1 1231 1111 00
Q ss_pred ccc--chhhHH----------------------hhhcCch----hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecC
Q 003747 448 AKV--PWFDSV----------------------FADIGDE----QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~~i--~~~~~i----------------------~~~ig~~----~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP 498 (798)
..+ .+.+.+ +..++.. ..+......+|++ .+++..+.+++.+|+++|||||
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 111111 0011110 1122333456654 4566667778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
|+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|++...
T Consensus 177 ~~gLD~~~~~~l~-~~l~~~~~-~~t-vii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 177 CSALDPIATAKIE-DLIEDLKK-EYT-VIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred cccCCHHHHHHHH-HHHHHHhh-Cce-EEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999997777765 46666655 566 99999998776 58999999999998654
No 272
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.3e-17 Score=172.35 Aligned_cols=157 Identities=16% Similarity=0.220 Sum_probs=104.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc---------------------cccccccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------------LHILSSEY 447 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G---------------------~~vpa~~~ 447 (798)
++..++.+++|. ..|++++|+|||||||||||++|++...... .| .++|....
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 345789999999 8899999999999999999999976532211 01 11121000
Q ss_pred c--ccchhhHH----------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 A--KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~--~i~~~~~i----------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
. ...+.+.+ +..++.. +........+|+++ +++..+.+++.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 01111111 1112221 11223334566554 566666778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+.. ++..+.+ ++| ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 181 t~~LD~~~~~~l~~-~l~~~~~-~~t-iilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 181 TSMIDIVNSQAIEK-LITELKN-EIA-IVIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred CccCCHHHHHHHHH-HHHHHhc-CcE-EEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999977666654 6666654 577 99999998877 689999999999887543
No 273
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.5e-17 Score=175.28 Aligned_cols=154 Identities=14% Similarity=0.202 Sum_probs=101.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++... + ..|. ++|. ...
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q-~~~ 111 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ-RPN 111 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEcc-CCc
Confidence 4689999999 88999999999999999999999865321 0 1221 1221 100
Q ss_pred cc--chhhHHh--------------------hhcCc----hhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCC
Q 003747 449 KV--PWFDSVF--------------------ADIGD----EQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 449 ~i--~~~~~i~--------------------~~ig~----~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.+ .+.+.+. ..++. .+........+|++ .+++..+.+++.+|++|||||||+|
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 00 1112111 01111 01122233456654 4566777778999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccee---------eeEEEEec
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE---------NACMEFDE 554 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~---------ng~v~fd~ 554 (798)
||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+. +|.+..++
T Consensus 192 LD~~~~~~l~~-~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 192 LDPISTRQVEE-LCLELKE-QYT-IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 99977777655 5555654 676 99999998766 5888888886 57776543
No 274
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.6e-17 Score=189.79 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=106.3
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------------------cccccccc-----cc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY-----AK 449 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------------------~~vpa~~~-----~~ 449 (798)
.+..+++|. ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC-ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 578899998 889999999999999999999997653211 01 11221000 00
Q ss_pred cchh---------------------------hHHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCC
Q 003747 450 VPWF---------------------------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 450 i~~~---------------------------~~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~s 500 (798)
+.++ ..++..++.. +.......++|++++ ++..+.+++.+|++|||||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0000 1112223332 233455667786655 5566667799999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
|+|+.....+.. ++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..
T Consensus 421 gLD~~~~~~~~~-~l~~l~~~~~t-vi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 421 GIDVGAKFEIYQ-LIAELAKKDKG-IIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred ccChhHHHHHHH-HHHHHHHCCCE-EEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 999977777654 66777778888 99999998776 5999999999999874
No 275
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.1e-17 Score=175.87 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=102.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|. ...
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q-~~~ 130 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQ-KPN 130 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEec-CCc
Confidence 4689999999 88999999999999999999999776421 11221 1121 000
Q ss_pred cc--chhhHH--------------------hhhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 449 KV--PWFDSV--------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 449 ~i--~~~~~i--------------------~~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.+ .+.+.+ +..++.. +.+......+|+++ +++..+.+++.+|+||||||||+|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 00 111111 1122221 12233445677655 566666778999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccc-ceeeeEEEEec
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSND-FFENACMEFDE 554 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~-~l~ng~v~fd~ 554 (798)
||+.....+. .++..+.+ +.| ||++||+.++. .+|+++. .+.+|.+..+.
T Consensus 211 LD~~~~~~l~-~~L~~~~~-~~t-iii~tH~~~~i~~~~dri~v~l~~G~i~~~g 262 (285)
T PRK14254 211 LDPVATSKIE-DLIEELAE-EYT-VVIVTHNMQQAARISDKTAVFLTGGELVEFD 262 (285)
T ss_pred CCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHhhcCEEEEEeeCCEEEEeC
Confidence 9996666664 46666665 466 99999998886 4788764 45888886543
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6e-17 Score=170.51 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=103.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc----------------------cccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL----------------------HILSSEYA 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~----------------------~vpa~~~~ 448 (798)
++.++.+++++ ..|++++|+||||||||||||+|+++.... ..|. ++|. ...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-~~~ 93 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ-KPN 93 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEec-CCC
Confidence 35689999999 889999999999999999999997754321 1221 1111 000
Q ss_pred c--cchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ..+.+.+. ..++.. +.+......+|+++ +++..+.+++.+|+||||||||
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 173 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 01111111 001110 11122234566554 5666666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 174 ~~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 174 SALDPIATHKIE-ELMEELKK-NYT-IVIVTHSMQQARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999996666654 46666655 566 99999998875 589999999999987643
No 277
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.8e-17 Score=171.42 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=104.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~ 447 (798)
+..+..+++|+ ..|++++|+||||+|||||||+|+++.... ..|. ++|....
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 34688999998 889999999999999999999998764321 1121 1111000
Q ss_pred --cccchhhHHh---hhcC--ch---------------------hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecC
Q 003747 448 --AKVPWFDSVF---ADIG--DE---------------------QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 --~~i~~~~~i~---~~ig--~~---------------------~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP 498 (798)
....+.+.+. ...+ .. +......+.+|+++ +++..+.+++.+|++||||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0011112221 0001 00 11122234566554 566677788999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
|+|+|+.....+.. +++.+.+ +.| +|++||+.+... +|+++..+.+|++..++
T Consensus 176 ~~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 176 TSALDPASTARIED-LMTDLKK-VTT-IIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred CccCCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999977666654 6666654 676 999999988764 89999999999997654
No 278
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.7e-17 Score=170.97 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=103.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh-hc---cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~-~a---q~G~-----------------------~vpa~~~~ 448 (798)
+.++.+++++ ..|++++|+||||||||||||+|+++.. .+ +.|. ++|. ...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~~ 96 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQ-QPN 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEEC-CCc
Confidence 4688999998 8899999999999999999999987532 11 1221 1121 100
Q ss_pred c--cchhhHHh----------------------hhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ..+.+.+. ..++. .+........+|+++ +++..+.+++.+|+++||||||
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0 01111111 00110 011222334566555 5566666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 177 ~~LD~~~~~~l~~-~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 177 SALDPISSTQIEN-MLLELRD-QYT-IILVTHSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999977777654 5556655 466 89999998876 589999999999997653
No 279
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=4e-17 Score=165.91 Aligned_cols=137 Identities=19% Similarity=0.187 Sum_probs=90.9
Q ss_pred eeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------ccccccc--cccchhh------
Q 003747 401 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD------ 454 (798)
Q Consensus 401 ~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------~vpa~~~--~~i~~~~------ 454 (798)
.+++++ +.|++++|+||||||||||+|+|+++.... .|. ++|.... ....+.+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~ 95 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWS 95 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHH
Confidence 348888 888999999999999999999997653221 121 1121000 0011111
Q ss_pred ----------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 455 ----------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 455 ----------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
.++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++....+.|.
T Consensus 96 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 174 (195)
T PRK13541 96 EIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGG 174 (195)
T ss_pred HhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCC
Confidence 11233344444455566777655 4566666778999999999999999997766654 45555566788
Q ss_pred cEEEEEecchhHHhhhc
Q 003747 524 LLTIATTHHGELKTLKY 540 (798)
Q Consensus 524 t~VIitTHd~el~~~a~ 540 (798)
| +|++||+.+....++
T Consensus 175 t-iii~sh~~~~i~~~~ 190 (195)
T PRK13541 175 I-VLLSSHLESSIKSAQ 190 (195)
T ss_pred E-EEEEeCCccccchhh
Confidence 7 999999988766554
No 280
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.7e-17 Score=170.47 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=102.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----ccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----SGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++..... .|. ++|. ...
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q-~~~ 95 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQ-QPN 95 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEec-CCc
Confidence 4588999999 8899999999999999999999977643210 121 1111 000
Q ss_pred cc--chhhHHh----------------------hhcCch----hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCC
Q 003747 449 KV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~i--~~~~~i~----------------------~~ig~~----~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+ .+.+++. ..++.. .........+|++ ++++..+.+++.+|++|||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 1111110 011111 1122333446654 45666667789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|||+.....+.. ++..+. .+.| ||++||+.+.. .+|+++..+.+|.+....
T Consensus 176 ~~LD~~~~~~l~~-~l~~~~-~~~t-ilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 176 SALDPVSTMRIEE-LMQELK-QNYT-IAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHh-cCCE-EEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 9999977776654 666664 4777 99999998776 588999999999987543
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=4.2e-17 Score=159.65 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---------------------------ccccccc--
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------------SGLHILS-- 444 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---------------------------~G~~vpa-- 444 (798)
++..++++++|. ..|++++||||+|||||||||+++.+.-+.. .-..++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 456899999999 8899999999999999999999975532221 1111110
Q ss_pred ccccccch-----------hhHHhhhcCchhhHh-hhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 445 SEYAKVPW-----------FDSVFADIGDEQSLS-QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 445 ~~~~~i~~-----------~~~i~~~ig~~~si~-~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
.++..+++ +-.++++++..+++. .....+|| +.++++.+..+..-|++|||||||++||+.....+-
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 01111221 123455555554443 34455665 556777777788999999999999999999999987
Q ss_pred HHHHHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEE
Q 003747 512 MSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACME 551 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~ 551 (798)
.-+.++.++.... ++.+|||.+. .+.++++..+..|+..
T Consensus 174 ~mi~~~v~~q~vA-v~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 174 EMIHRYVREQNVA-VLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHhhhhceE-EEEEecChHHHhhhhheEEEeccCccc
Confidence 7777777788887 9999999887 5788888888887764
No 282
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.3e-17 Score=173.42 Aligned_cols=147 Identities=14% Similarity=0.263 Sum_probs=96.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|. ...
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ-QPN 104 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEcc-CCc
Confidence 4689999999 89999999999999999999999776321 12221 1111 000
Q ss_pred cc--chhhHH--------------------hhhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 449 KV--PWFDSV--------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 449 ~i--~~~~~i--------------------~~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.+ .+.+.+ +..++. .+........+|+++ +++..+.+++.+|++|||||||+|
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 00 111111 011111 011122234566555 556666678999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceee
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 547 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~n 547 (798)
||+.....+.. ++..+.. +.| ||++||+.+.. .+|+++..+.+
T Consensus 185 LD~~~~~~l~~-~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 185 LDPISTLKIEE-TMHELKK-NFT-IVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEec
Confidence 99977776654 6666654 676 99999998766 68888888876
No 283
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=3.9e-17 Score=160.37 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=118.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------------cc------ccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------------SG------LHI 442 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------------~G------~~v 442 (798)
+.-.|+.++++. ..|+.++|+||+||||||||-.++++..... .| ..+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 345689999998 8889999999999999999999976532111 11 111
Q ss_pred cc---ccccccc-------------hhhHHhhhcCchhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 443 LS---SEYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 443 pa---~~~~~i~-------------~~~~i~~~ig~~~si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
|. -++..+| .....+..+|..+.+.-....+|+ +++|++.+.+++..|++|+-||||.+||..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 21 0111111 112345566766666666667775 567788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+..++..+...-++.|.| .+++|||..++..|++.+.+.+|+++-|
T Consensus 181 Tg~~iaDLlF~lnre~G~T-lVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 181 TGDKIADLLFALNRERGTT-LVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHHHHHhhhcCce-EEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999988666666678887 8999999999999999999999998643
No 284
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8e-17 Score=172.21 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=103.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. ++|. ...
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~~ 115 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ-KPN 115 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEec-CCc
Confidence 4688999999 8899999999999999999999987643 1 12231 1111 000
Q ss_pred c--cchhhHHhh-----hcCc---------------------hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVFA-----DIGD---------------------EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~~-----~ig~---------------------~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ..+.+.+.. .... ...+......+|+++ +++..+.+++.+|++|||||||
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 011122210 0000 011122234466554 5666666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 196 ~~LD~~~~~~l~~-~l~~~~~-~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 196 SALDPISTLKVEE-LVQELKK-DYS-IIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred CcCCHHHHHHHHH-HHHHHHc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999977777655 5566655 677 99999998875 589999999999997643
No 285
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=5.8e-17 Score=173.92 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=104.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
+..++.+++|. ..|++++|+||||+||||||++|.++.. . .| .++|. ....+ .
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~~~lr~~i~~v~q-~~~lf~~t 92 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPLQKWRKAFGVIPQ-KVFIFSGT 92 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCHHHHhhhEEEECC-Ccccchhh
Confidence 34689999999 8999999999999999999999976542 1 12 12222 11000 0
Q ss_pred hhhH--------------HhhhcCchhhHhhhhhh-----------hhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS--------------VFADIGDEQSLSQSLST-----------FSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~--------------i~~~ig~~~si~~~lst-----------fs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.++ .+..+|....+...... ||++++ ++..+.+++.+|++|||||||+|+|+.
T Consensus 93 v~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~ 172 (275)
T cd03289 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI 172 (275)
T ss_pred HHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 1111 12233444333333322 776654 556666779999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
....+.. ++..+. .++| ||++||+.+....|+++..+.+|.+...
T Consensus 173 ~~~~l~~-~l~~~~-~~~t-ii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 173 TYQVIRK-TLKQAF-ADCT-VILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHH-HHHHhc-CCCE-EEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 7666654 444443 4777 9999999988878999999999988754
No 286
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.71 E-value=3.8e-17 Score=188.97 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=106.3
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----c----------------ccccccccc-----cccc
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----S----------------GLHILSSEY-----AKVP 451 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~----------------G~~vpa~~~-----~~i~ 451 (798)
+..+++|+ ..|++++|+||||||||||||+|+++..... . -.++|.... ..+.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 67888888 8899999999999999999999976532110 0 012222100 0011
Q ss_pred hhh---------------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 452 WFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 452 ~~~---------------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.+ .++..++.. ........++|++++ ++..+.+++.+|++|||||||+||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 111 122333442 234445567776665 556666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+.. ++..+...|.| ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 427 D~~~~~~l~~-~l~~~~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 427 DVGAKKEIYQ-LINQFKAEGLS-IILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred CHhHHHHHHH-HHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9977777654 66667777887 99999998776 589999999999987543
No 287
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=5.7e-17 Score=160.14 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=113.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----------------ccccccccccc------cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------KSGLHILSSEY------AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----------------q~G~~vpa~~~------~~i~~ 452 (798)
..-|+..+++. +.|.++.|+|.+|||||||||||..+..+. ..|-.+|+... +.+++
T Consensus 18 ~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 34689999999 899999999999999999999997554322 22333343110 01111
Q ss_pred -------------h----------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEe
Q 003747 453 -------------F----------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 496 (798)
Q Consensus 453 -------------~----------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLD 496 (798)
. ..++...|+.+........+||+. +|.+.+.+++.+|.++|+|
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence 0 112344455555555556677655 4555566779999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 497 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 497 EP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
||||+|||+-..... .++..|++.|.| .+++||.+.+++ .+..++.+.+|.++..+
T Consensus 178 EPTSALDPElVgEVL-kv~~~LAeEgrT-Mv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 178 EPTSALDPELVGEVL-KVMQDLAEEGRT-MVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhCCe-EEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999997766665 588889999998 899999999996 77788889999987544
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.4e-17 Score=191.83 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=108.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc------------------------ccccccccccc-c--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEY-A-- 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a------------------------q~G~~vpa~~~-~-- 448 (798)
..+..+++|+ ..|++++|+||||||||||+|+|+++.... ..| ++|.... .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ-FIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE-EEecCchhhcC
Confidence 3588999999 889999999999999999999997653211 011 2222110 0
Q ss_pred -ccchhh----------------------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 449 -KVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 449 -~i~~~~----------------------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
.+.+.+ .++..+|.. .........+|++++ ++..+.+++.+|+||||||||+|||
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 011111 123334543 334555667887665 5566667789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+.. ++..+.+ .|.| ||++|||.++. .+|+++..+.+|++...+
T Consensus 496 ~~~~~~i~~-ll~~l~~~~g~t-vi~isHdl~~v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 496 VSIRGQIIN-LLLDLQRDFGIA-YLFISHDMAVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 977777755 6656655 4887 99999998877 589999999999987543
No 289
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.6e-17 Score=173.40 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=104.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc----------------------ccccccc-
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL----------------------HILSSEY- 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~----------------------~vpa~~~- 447 (798)
++.++.+++|+ ..|++++|+||||+|||||||+|+++... ...|. ++|....
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 45689999999 88999999999999999999999776432 11221 1121000
Q ss_pred cccchhhHH----------------------hhhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 448 AKVPWFDSV----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 448 ~~i~~~~~i----------------------~~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
......+.+ +..++... .+......+|+++ +++..+.+++.+|++|||||||+
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 000111111 11112211 1122334566554 56666667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|+.....+.. ++..+.+ +.| ||++||+.+.. .+++++..+.+|++...+
T Consensus 193 ~LD~~~~~~l~~-~L~~~~~-~~t-iiivsH~~~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 193 ALDPTTTEKIEE-FIRSLAD-RLT-VIIVTHNLAQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred cCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999977666654 6666655 466 99999998865 689999999999987653
No 290
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.3e-17 Score=173.04 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=103.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
+..++.+++|+ ..|++++|+||||||||||+|+|+++... +..|. ++|. ..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q-~~ 115 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ-RP 115 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEec-CC
Confidence 34688999999 88999999999999999999999776431 12231 1111 00
Q ss_pred ccc--chhhHHh----------------------hhcCchh----hHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecC
Q 003747 448 AKV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~~i--~~~~~i~----------------------~~ig~~~----si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP 498 (798)
..+ .+.+++. ..++..+ ........+|++ .+++..+.+++.+|+++|||||
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 195 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 000 1112111 0111111 111223446654 4566666778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|.+..++
T Consensus 196 t~gLD~~~~~~l~-~~L~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 196 TSALDPISTLKIE-ELITELKS-KYT-IVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-CCe-EEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 9999997666664 46666665 677 89999998875 689999999999987653
No 291
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.4e-17 Score=189.73 Aligned_cols=149 Identities=19% Similarity=0.135 Sum_probs=103.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------cccccccc----cccchhh-------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY----AKVPWFD------- 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------~~vpa~~~----~~i~~~~------- 454 (798)
+.+..+++|+ ..|++++|+||||||||||||+|+++..+. .| .++|.... ..+.+.+
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 4688899998 889999999999999999999997653221 11 12232110 0011111
Q ss_pred ---------HHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 455 ---------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 455 ---------~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
.++..++.. +......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++. +.+.
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~---~~~~ 486 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-ALE---KYEG 486 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHH---HCCC
Confidence 223344542 344556677887665 5566667789999999999999999976666544 333 3356
Q ss_pred cEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 524 LLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 524 t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
| ||++|||.++. .+|+++..+.+|.+.
T Consensus 487 t-vi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 487 T-LIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred E-EEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 7 99999998876 489999999988876
No 292
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.70 E-value=6.5e-17 Score=168.59 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=66.7
Q ss_pred HhhhhhhhhHHHH-HHHHHHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 466 LSQSLSTFSGHLK-QIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 466 i~~~lstfs~~~~-ri~~il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
.....+++|++++ ++..+.+++.+| +++||||||+|+|+.....+.. ++..+.+.|.| +|++||+.++..+|+++
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~t-ii~itH~~~~~~~~d~i 208 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNT-VLVVEHDEDTIRAADHV 208 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCE-EEEEEeCHHHHHhCCEE
Confidence 4455667887665 455555667776 6999999999999987777765 55566777888 99999999888899999
Q ss_pred cce------eeeEEEEe
Q 003747 543 DFF------ENACMEFD 553 (798)
Q Consensus 543 ~~l------~ng~v~fd 553 (798)
..+ .+|.+..+
T Consensus 209 ~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 209 IDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred EEeCCCccccCCEEEec
Confidence 998 77887654
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7e-17 Score=191.48 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=108.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----------------------------------ccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------------------SGL 440 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----------------------------------~G~ 440 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... .|
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig- 107 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA- 107 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE-
Confidence 4689999999 8899999999999999999999976532110 11
Q ss_pred cccccc----ccccchhhH----------------------HhhhcCch---hhHhhhhhhhhHHHH-HHHHHHHhCCCC
Q 003747 441 HILSSE----YAKVPWFDS----------------------VFADIGDE---QSLSQSLSTFSGHLK-QIGNIISQSTSQ 490 (798)
Q Consensus 441 ~vpa~~----~~~i~~~~~----------------------i~~~ig~~---~si~~~lstfs~~~~-ri~~il~~a~~p 490 (798)
+++... ...+.+.++ ++..+|+. ..+.....++|++++ ++..+.+++.+|
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence 112100 000111111 22334442 234455667887665 566666789999
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 491 SLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 491 sLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
+||||||||+|||+.....+. .+++.+.+ .|.| ||++|||.++. .+|+++..+.+|.+..+
T Consensus 188 ~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~t-vi~itHdl~~~~~~adri~vl~~G~i~~~ 250 (623)
T PRK10261 188 AVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMG-VIFITHDMGVVAEIADRVLVMYQGEAVET 250 (623)
T ss_pred CEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEeeCCeeccc
Confidence 999999999999997766665 47777765 4887 99999998776 69999999999998754
No 294
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=8.3e-17 Score=170.64 Aligned_cols=153 Identities=12% Similarity=-0.001 Sum_probs=101.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
..++.+++|. ..|++++|+||||||||||||+|+++... ..|. ++|. ....+ .+
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q-~~~l~~~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQ-DPILFSGSI 111 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECC-CCcccccHH
Confidence 4689999999 88999999999999999999999765321 1121 1111 00000 00
Q ss_pred hhH--------------HhhhcCchhhHh-----------hhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS--------------VFADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~-----------~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.+. .+...+....+. .....+|++ .+++..+.+++.+|++|||||||+|+|+..
T Consensus 112 ~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 112 RFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 000 001112211111 112356654 556677778899999999999999999976
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
...+. .++..+. .+.| +|++||+.+....|+++..+.+|.+..++
T Consensus 192 ~~~l~-~~l~~~~-~~~t-iii~sh~~~~~~~~dri~~l~~G~i~~~g 236 (257)
T cd03288 192 ENILQ-KVVMTAF-ADRT-VVTIAHRVSTILDADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHH-HHHHHhc-CCCE-EEEEecChHHHHhCCEEEEEECCEEEEeC
Confidence 55554 4555554 4777 99999999888789999999999987543
No 295
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=169.15 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=102.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||+||||||++|+++.... ..|. ++|. ...
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q-~~~ 98 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHP-KPN 98 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEec-CCc
Confidence 3588999999 889999999999999999999998764321 1221 0111 000
Q ss_pred c--cchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ..+.+.+. ..++.. .........+|+++ +++..+.+++.+|++|||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 11111111 011110 01122234566555 5566666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceee-----eEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFEN-----ACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~n-----g~v~fd~ 554 (798)
+|+|+.....+.. ++..+.. .|.| ||++||+.+.. .+|+++..+.+ |.+....
T Consensus 179 ~~LD~~~~~~l~~-~l~~l~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 179 FGLDPIASMKVES-LIQSLRLRSELT-MVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred ccCCHHHHHHHHH-HHHHHHHhCCCE-EEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 9999976666654 5555554 4777 99999998876 58999999998 8887653
No 296
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=6.1e-17 Score=194.02 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=104.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------ccccccccccc-------------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEYAKVP------------- 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~~~~i~------------- 451 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..+.. |. ++|......+.
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~-G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS-GTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-ceEEECCceeEEEEeccccccCCcchhHHHHHHHhc
Confidence 34688999999 8899999999999999999999976543211 21 22211000000
Q ss_pred ------hhhHHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 452 ------WFDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 452 ------~~~~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
....++..++... ......+.+|++++ ++..+.+++.+|++|||||||+|||+.....+.. .+.+.++
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~----~L~~~~g 675 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ----GLVLFQG 675 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH----HHHHcCC
Confidence 0112344455543 34556677887665 5666667789999999999999999976655543 4444345
Q ss_pred cEEEEEecchhHHh-hhccccceeeeEEE
Q 003747 524 LLTIATTHHGELKT-LKYSNDFFENACME 551 (798)
Q Consensus 524 t~VIitTHd~el~~-~a~~~~~l~ng~v~ 551 (798)
| ||++|||.++.. +|+++..+.+|.+.
T Consensus 676 t-vIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 676 G-VLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 7 999999988774 89999999999886
No 297
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.69 E-value=9e-17 Score=190.96 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=98.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------cccccc-cccc-chhhH-------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE-YAKV-PWFDS------- 455 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~-~~~i-~~~~~------- 455 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... |. +++... .... .+++.
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~-G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~ 93 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD-GRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC-eEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHH
Confidence 45689999999 8899999999999999999999987543221 21 111100 0000 00000
Q ss_pred ------------------------------------------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHHh
Q 003747 456 ------------------------------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQ 486 (798)
Q Consensus 456 ------------------------------------------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~~ 486 (798)
++..+|.. ....++++|+++ +++..+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH
Confidence 01111111 123456788766 456666677
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
+.+|+||||||||+|||+.....+.. + |.+.+.+ ||+||||.++. .+|+++..+.+|.+.
T Consensus 172 ~~~P~lLLLDEPt~~LD~~~~~~L~~-~---L~~~~~t-vlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWLEG-F---LKTFQGS-IIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHH-H---HHhCCCE-EEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999966554433 3 3334566 89999998877 588989888888775
No 298
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=7.6e-17 Score=171.24 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=99.6
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhccccccc------------ccc--------------------
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------LSS-------------------- 445 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v------------pa~-------------------- 445 (798)
.+..++++-..|++++|+||||||||||||+|+++... ..|... ...
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 46777774378899999999999999999999766432 122210 000
Q ss_pred -cccccc------------------hhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 446 -EYAKVP------------------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 446 -~~~~i~------------------~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.....+ ....++..++..+........+|++++ ++..+.+++.+|+++||||||+|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 000000 011123344554445555667776554 555666678999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACME 551 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~ 551 (798)
....+. .++..+.+.+++ ||++||+.+... +|+++..+ +|.+.
T Consensus 174 ~~~~l~-~~l~~l~~~~~t-IIiiSHd~~~~~~~ad~i~~l-~~~~~ 217 (255)
T cd03236 174 QRLNAA-RLIRELAEDDNY-VLVVEHDLAVLDYLSDYIHCL-YGEPG 217 (255)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEE-CCCCC
Confidence 766665 466677767887 999999988875 77777655 44443
No 299
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=168.58 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=101.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
+..++++++|+ ..|++++|+||||+|||||+|+|+++... +..|. ++|....
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 45789999999 88999999999999999999999766432 11221 1111000
Q ss_pred -cccchhhHH--------------------hhhcCchhh----HhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 448 -AKVPWFDSV--------------------FADIGDEQS----LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 448 -~~i~~~~~i--------------------~~~ig~~~s----i~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.....++.+ +..++.... .......+|+++ +++..+.+++.+|++|||||||+|
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg 179 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 001111111 111121111 112223466555 556666678999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccee--------eeEEEEe
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE--------NACMEFD 553 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~--------ng~v~fd 553 (798)
+|+.....+.. ++..+.+ +.| +|++||+.+.. .+|+++..+. +|.+...
T Consensus 180 LD~~~~~~l~~-~l~~~~~-~~t-ii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 180 LDPIATRRVEE-LMVELKK-DYT-IALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99977776655 5556653 676 89999998865 6899888885 6777654
No 300
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.6e-17 Score=165.18 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=108.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh----------h------------hcccccccccccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------M------------MAKSGLHILSSEYAKVP-- 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~----------~------------~aq~G~~vpa~~~~~i~-- 451 (798)
+.++.+++|+ +.|++++|+||||||||||.++|++.. + -+..|.++.-.....++
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 5899999999 999999999999999999999996531 1 12234332110111111
Q ss_pred ---hh----------------------hHHhhhcCchh-hHhhhh-hhhhHHHHHHHHHHH-hCCCCeEEEEecCCCCCC
Q 003747 452 ---WF----------------------DSVFADIGDEQ-SLSQSL-STFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 452 ---~~----------------------~~i~~~ig~~~-si~~~l-stfs~~~~ri~~il~-~a~~psLLLLDEP~sGlD 503 (798)
.| ......++... .+...+ -.|||+.++...++. ++.+|+++|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 00 01122233322 222222 258876666666654 478999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh--ccccceeeeEEEEecc
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDEV 555 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a--~~~~~l~ng~v~fd~~ 555 (798)
. ++..+....++.+++.|.+ ++++||+..+..|. |.+..+.+|++...++
T Consensus 177 I-dalk~V~~~i~~lr~~~~~-~liITHy~rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 177 I-DALKIVAEGINALREEGRG-VLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred H-HHHHHHHHHHHHHhcCCCe-EEEEecHHHHHhhcCCCEEEEEECCEEEecCC
Confidence 8 5566666688889999988 99999999999877 7778889999987553
No 301
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=169.54 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=100.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc----cccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a----q~G~-----------------------~vpa~~~~ 448 (798)
..+..+++++ ..|++++|+||||||||||||+|+++.... ..|. ++|. ...
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 98 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ-RPN 98 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEec-ccc
Confidence 4688999999 889999999999999999999998764321 1231 1111 000
Q ss_pred c--cchhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 449 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~--i~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
. ....+.+. ..++.. +........+|+++ +++..+.+++.+|++|||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0 01111111 111111 11122234566554 5666667788999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccee-----eeEEEEe
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE-----NACMEFD 553 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~-----ng~v~fd 553 (798)
+|+|+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+. +|.+...
T Consensus 179 ~~LD~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 179 SALDPIATMKVEE-LIHSLRS-ELT-IAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999977666654 5555654 576 99999998776 5888888876 4887654
No 302
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=166.33 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=101.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--h--ccccc-----------------------cccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~--aq~G~-----------------------~vpa~~~~ 448 (798)
+.+..+++++ ..|++++|+||||+||||||++|+++.. . +..|. ++|. ...
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q-~~~ 94 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ-KPN 94 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEec-CCc
Confidence 4689999999 8899999999999999999999986531 1 12231 1111 000
Q ss_pred cc--chhhHHh----------------------hhcCch----hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCC
Q 003747 449 KV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 449 ~i--~~~~~i~----------------------~~ig~~----~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+ ...+++. ..++.. .........+|++ .+++..+.+++.+|+++||||||
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 00 0111111 111111 0112223445654 45666677789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+.. ++..+.+ +.| ||++||+.+.. .+++++..+.+|++..+.
T Consensus 175 ~gLD~~~~~~l~~-~l~~~~~-~~t-iii~sh~~~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 175 SALDPISTTKIED-LIHKLKE-DYT-IVIVTHNMQQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCe-EEEEECCHHHHHhhcCEEEEEECCeEEEeC
Confidence 9999977777654 5556654 677 99999998766 467777788999997654
No 303
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=169.26 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=102.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-------------------------ccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-------------------------HILSS 445 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-------------------------~vpa~ 445 (798)
++.+..+++|+ ..|++++|+||||||||||||+|+++... + ..|. ++|.
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q- 106 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ- 106 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc-
Confidence 34689999999 88999999999999999999999875421 0 1121 1111
Q ss_pred ccccc--chhhHHh----------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEe
Q 003747 446 EYAKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 496 (798)
Q Consensus 446 ~~~~i--~~~~~i~----------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a~~psLLLLD 496 (798)
....+ .+.+.+. ..++.. +........+|+++ +++..+.+++.+|+++|||
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00000 1111110 011110 11122234466554 5566666789999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 497 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 497 EP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||+|+|+.....+.. ++..+.. +.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 187 EPt~gLD~~~~~~l~~-~l~~l~~-~~t-iiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 187 EPTSALDPIATASIEE-LISDLKN-KVT-ILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CCCccCCHHHHHHHHH-HHHHHHh-CCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999977666654 6666654 576 89999998876 589999999999987543
No 304
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=1.2e-16 Score=205.50 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=112.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccc--cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~--~~i~~~ 453 (798)
+.+.++++++ ..|++++|+||||||||||||+|++...... .| ++|.... ..+...
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 5689999999 8999999999999999999999976532211 11 1222100 001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+.++..++..+.......++|++++ ++..+.+++.+|++|||||||+|+||.....+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l- 2109 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML- 2109 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 1123344555555556678887765 45566678999999999999999999776666
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.++..+.+.|.| ||+|||+++.. .+|+++..+.+|++...+
T Consensus 2110 ~~lL~~l~~~g~T-IILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2110 WNTIVSIIREGRA-VVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 5577777777887 99999998877 589999999999998754
No 305
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=173.33 Aligned_cols=156 Identities=14% Similarity=0.182 Sum_probs=101.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
+..++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|....
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 35689999999 88999999999999999999999876421 12221 1121000
Q ss_pred c-ccchhhHHh----------------------------------hhcCch----hhHhhhhhhhhHHH-HHHHHHHHhC
Q 003747 448 A-KVPWFDSVF----------------------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQS 487 (798)
Q Consensus 448 ~-~i~~~~~i~----------------------------------~~ig~~----~si~~~lstfs~~~-~ri~~il~~a 487 (798)
. ...+.+.+. ..++.. .........+|+++ +++..+.+++
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 0 001111111 001110 11122334566555 5666667789
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccc-cceeeeEEEEec
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSN-DFFENACMEFDE 554 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~-~~l~ng~v~fd~ 554 (798)
.+|+||||||||+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++ ..+.+|.+..+.
T Consensus 217 ~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~-~~t-iiivtH~~~~i~~~~d~i~~~l~~G~i~~~g 282 (305)
T PRK14264 217 VDPEVILMDEPASALDPIATSKIE-DLIEELAE-EYT-VVVVTHNMQQAARISDQTAVFLTGGELVEYD 282 (305)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCE-EEEEEcCHHHHHHhcCEEEEEecCCEEEEeC
Confidence 999999999999999997666664 46666665 466 99999998886 578886 456889987653
No 306
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=9.5e-17 Score=185.47 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=98.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHH------------------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV------------------ 456 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i------------------ 456 (798)
++.+..++++. ..|.-++|+||||+|||||||+|.+..-.. .|..... ....++||+|-
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g-~~v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVG-ETVKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeC-CceEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 35788889988 777789999999999999999994432211 2322221 22333333322
Q ss_pred -----------hhhcCc-hhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 457 -----------FADIGD-EQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 457 -----------~~~ig~-~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
+.+|+. .+...+.+.++||+ ..|+..+..++.+|+||||||||+.||.....+ +.+.|.++.+
T Consensus 412 ~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~a----Le~aL~~f~G 487 (530)
T COG0488 412 PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA----LEEALLDFEG 487 (530)
T ss_pred ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHH----HHHHHHhCCC
Confidence 222322 12334455667765 456777777789999999999999999955444 4456677888
Q ss_pred cEEEEEecchhHHh-hhccccceee
Q 003747 524 LLTIATTHHGELKT-LKYSNDFFEN 547 (798)
Q Consensus 524 t~VIitTHd~el~~-~a~~~~~l~n 547 (798)
| ||+||||.++.. .|.++..+.+
T Consensus 488 t-vl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 488 T-VLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred e-EEEEeCCHHHHHhhcceEEEEcC
Confidence 7 999999999985 6766666655
No 307
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=168.70 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=99.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----cccccc-----------------------ccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGLH-----------------------ILSSEYA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~~-----------------------vpa~~~~ 448 (798)
..++.+++|+ ..|++++|+||||+|||||||+|+++... +..|.. +|. ...
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ-KPN 101 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc-CCc
Confidence 4688999999 88999999999999999999999865321 122311 111 000
Q ss_pred cc--chhhHHh--------------------hhcCchh----hHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCC
Q 003747 449 KV--PWFDSVF--------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 449 ~i--~~~~~i~--------------------~~ig~~~----si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sG 501 (798)
.+ .+.+++. ..++... ........+|+++ +++..+.+++.+|++|||||||+|
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00 1111111 0111100 1112223466554 566666777899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccee---------eeEEEEe
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE---------NACMEFD 553 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~---------ng~v~fd 553 (798)
||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+. +|.+...
T Consensus 182 LD~~~~~~l~-~~L~~~~~-~~t-vi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 182 LDPISTLRIE-ELMHELKE-QYT-IIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred CCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9997777765 46666655 466 89999998765 6888888876 5777544
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=8.9e-17 Score=188.09 Aligned_cols=149 Identities=14% Similarity=0.046 Sum_probs=99.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------ccccccc--cccchhhHHh-----
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFDSVF----- 457 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~~--~~i~~~~~i~----- 457 (798)
+++++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+.+.+.+.
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~ 95 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-NGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAE 95 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHH
Confidence 35689999999 889999999999999999999997654221 121 2222110 0111111110
Q ss_pred ----------------------------------------------------hhcCchhhHhhhhhhhhHHHH-HHHHHH
Q 003747 458 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHLK-QIGNII 484 (798)
Q Consensus 458 ----------------------------------------------------~~ig~~~si~~~lstfs~~~~-ri~~il 484 (798)
..++.. ......+++|++++ ++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~ 174 (552)
T TIGR03719 96 IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCR 174 (552)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 001110 01234567776665 566666
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
+++.+|++|||||||+|||+.....+.. ++ .+.+.| ||++||+.++. .+|+++..+.+|.+.
T Consensus 175 al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L---~~~~~t-vIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQ-HL---QEYPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred HHhcCCCEEEEcCCCCCCChHHHHHHHH-HH---HhCCCe-EEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 7789999999999999999966665543 33 334566 89999998877 478888888888764
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=1.5e-16 Score=187.13 Aligned_cols=151 Identities=18% Similarity=0.072 Sum_probs=105.7
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------cccccccc--cccch---------------
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY--AKVPW--------------- 452 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~--~~i~~--------------- 452 (798)
.+.+++++ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 46677777 788999999999999999999997654221 12 12232110 00111
Q ss_pred -hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEE
Q 003747 453 -FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIAT 529 (798)
Q Consensus 453 -~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIit 529 (798)
...++..++..+.....+.++|+++ +++..+.+++.+|++|||||||+|||+.....+.. +++.+.. .|.| ||++
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-viiv 510 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK-AIRRIAEEREAT-ALVV 510 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EEEE
Confidence 1234555677666777788888765 55666667799999999999999999977777755 6666655 4787 9999
Q ss_pred ecchhHHh-hhccccceeeeEEEEe
Q 003747 530 THHGELKT-LKYSNDFFENACMEFD 553 (798)
Q Consensus 530 THd~el~~-~a~~~~~l~ng~v~fd 553 (798)
|||.++.. +|+++..+. +.+...
T Consensus 511 sHD~~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 511 DHDIYMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred eCCHHHHHHhCCEEEEEc-Ccceee
Confidence 99988874 788777664 455443
No 310
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=2.3e-16 Score=153.53 Aligned_cols=159 Identities=21% Similarity=0.281 Sum_probs=110.2
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccccccc----------------ch-hhH-
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV----------------PW-FDS- 455 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i----------------~~-~~~- 455 (798)
|...++.||+++ +.|+.++++||+|+|||||||++.++.... +|-..-+.....+ +. |.+
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 345689999999 889999999999999999999997665433 2322111011000 00 100
Q ss_pred -Hhhhc--------------Cc------------------hhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCC
Q 003747 456 -VFADI--------------GD------------------EQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 456 -i~~~i--------------g~------------------~~si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sG 501 (798)
+..++ |. .+..+...-.+|| +.+|++.+.+++.+|.+||+||||++
T Consensus 92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaa 171 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccc
Confidence 01111 11 1111111112344 45677777788999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEeccc
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDEVK 556 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~~~ 556 (798)
|||+-...+ ..|++.|...|.| -+++||..+++. .+.+++.+++|++...++.
T Consensus 172 ldpeitaqv-v~iikel~~tgit-qvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 172 LDPEITAQI-VSIIKELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred cCHHHHHHH-HHHHHHHHhcCce-EEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 999666666 4689999999998 789999999985 8899999999999876654
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=1.3e-16 Score=186.86 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=100.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc----------ccccccc--cccchhhHHh-----
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFDSVF----- 457 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~----------~vpa~~~--~~i~~~~~i~----- 457 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+.+.+.+.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-EGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence 35789999999 889999999999999999999997764321 121 2232110 0111222111
Q ss_pred ----------------------------------------------------hhcCchhhHhhhhhhhhHHH-HHHHHHH
Q 003747 458 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHL-KQIGNII 484 (798)
Q Consensus 458 ----------------------------------------------------~~ig~~~si~~~lstfs~~~-~ri~~il 484 (798)
..+|.. ......+.+|+++ +++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~ 176 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 111111 1233456778766 5566666
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEE
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
+++.+|++|||||||+|||+.....+.. ++.. .+.| ||++|||.++. .+|+++..+.+|.+.
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~---~~~t-viiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHD---YPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHh---CCCe-EEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 7799999999999999999966665543 4443 3456 89999998877 588888888888764
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=2e-16 Score=185.21 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=101.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------cccccccc---cccchhh-------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY---AKVPWFD------- 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------~~vpa~~~---~~i~~~~------- 454 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+...+
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 35689999999 889999999999999999999997653211 11 12232110 0011111
Q ss_pred ------------HHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 455 ------------SVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 455 ------------~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
.++..++... ......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~-- 489 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEE-ALLEF-- 489 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHC--
Confidence 2334455542 34556678887665 5566667799999999999999999977666654 44433
Q ss_pred cCCcEEEEEecchhHH-hhhccccceeee-EE
Q 003747 521 SGSLLTIATTHHGELK-TLKYSNDFFENA-CM 550 (798)
Q Consensus 521 ~g~t~VIitTHd~el~-~~a~~~~~l~ng-~v 550 (798)
+.+ ||++|||.++. .+|+++..+.++ .+
T Consensus 490 -~~~-viivsHd~~~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 490 -AGC-AVVISHDRWFLDRIATHILAFEGDSHV 519 (552)
T ss_pred -CCe-EEEEeCCHHHHHHhCCEEEEEECCCeE
Confidence 346 89999998876 478888777653 44
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=2.4e-16 Score=184.71 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=101.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------ccccccc-c--cccchhh-------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSE-Y--AKVPWFD------- 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------~~vpa~~-~--~~i~~~~------- 454 (798)
++.++.+++|+ ..|++++|+||||||||||||+|+++..+. .| .++|... . ..+.+.+
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 35689999999 889999999999999999999997653211 11 1233211 0 0111111
Q ss_pred ------------HHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 455 ------------SVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 455 ------------~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
.++..++... ......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~-- 491 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEE-ALLEF-- 491 (556)
T ss_pred cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHhC--
Confidence 1233445532 34556678887665 5566667789999999999999999977666654 44433
Q ss_pred cCCcEEEEEecchhHH-hhhccccceee-eEE
Q 003747 521 SGSLLTIATTHHGELK-TLKYSNDFFEN-ACM 550 (798)
Q Consensus 521 ~g~t~VIitTHd~el~-~~a~~~~~l~n-g~v 550 (798)
+.+ ||++|||.++. .+|+++..+.+ |.+
T Consensus 492 -~~t-vi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 492 -PGC-AVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred -CCe-EEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 346 89999998876 58888877765 444
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.67 E-value=2.2e-16 Score=188.02 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=108.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc-ccc-----------------cccccccc--cccchhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG-----------------LHILSSEY--AKVPWFD 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-q~G-----------------~~vpa~~~--~~i~~~~ 454 (798)
++.+++++++. +.|++++|+|||||||||||++|++..... ..| .++|.... ..+.+.+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 46799999999 899999999999999999999998754221 112 12221100 0011111
Q ss_pred H------------------------HhhhcCchhhHh-----hhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 455 S------------------------VFADIGDEQSLS-----QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 455 ~------------------------i~~~ig~~~si~-----~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
. ++..+|..+... .....+|++ .+|+..+.+++.+|++|||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 1 122223222111 112346655 4566777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~e--l~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. +++.+.+.|.| ||++||+.+ +..++|++..+.+|++.+.+
T Consensus 240 ~~~~~l~~-~L~~l~~~g~T-vI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 240 TAAYRLVL-TLGSLAQKGKT-IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred HHHHHHHH-HHHHHHhCCCE-EEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 77777654 66677777888 999999975 56789999999999998765
No 315
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=3.1e-16 Score=166.57 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=113.5
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------------------ccccc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------------HILSS 445 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------------------~vpa~ 445 (798)
.-.+|++|+ ++|++++|+|=+|||||||+|++..+.-+...-. ..|-.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 457889999 8999999999999999999999965432221100 11100
Q ss_pred ---cccccc-------------hhhHHhhhcCchhhHhhhhhhhhHHHHHH-HHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 446 ---EYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 446 ---~~~~i~-------------~~~~i~~~ig~~~si~~~lstfs~~~~ri-~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
++..++ .....+...|..+.-......+||+|++. ..+.+++++|++||||||||+|||.-..
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 000000 01123445566666666777889998754 4555779999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 509 ALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 509 al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.+-..+++.-.+.+.| |+|+|||++.+ .+.+++..+.+|.+.--
T Consensus 202 ~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 202 EMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred HHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEEEecCCeEEEe
Confidence 9888888766677888 99999998877 68999999999998643
No 316
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.9e-16 Score=170.19 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=105.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----ccccc-----------------------ccccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~-----------------------~vpa~~~ 447 (798)
...++++++|+ ..|++++|+|||||||||||++|+++... +..|. ++|....
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 34689999999 88999999999999999999999766421 11221 1221000
Q ss_pred -cccchhhHHh----------------------hhcCc----hhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCC
Q 003747 448 -AKVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 448 -~~i~~~~~i~----------------------~~ig~----~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~ 499 (798)
....+.+++. ...+. ...+......+|+++ +++..+.+++.+|++|||||||
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0001112221 11111 111223344567554 5666666789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+|+|+.....+ ..++..+.+ ++| +|++||+++.. .+|+++..+.+|.+...+
T Consensus 254 s~LD~~~~~~i-~~~i~~l~~-~~T-ii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 254 SALDPIATAKI-EELILELKK-KYS-IIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999776665 456666655 577 99999998886 479999999999997654
No 317
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.1e-16 Score=155.52 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=93.1
Q ss_pred hhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-----cccccc----------------cccc
Q 003747 392 ALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----LHILSS----------------EYAK 449 (798)
Q Consensus 392 ~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-----~~vpa~----------------~~~~ 449 (798)
+..+..++..+++|. ..|+++.|+||||+|||||||+|+++.-....- ..++.. -...
T Consensus 10 ~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 334567899999999 889999999999999999999998764332210 001000 1111
Q ss_pred cchhhHH------------------hhhcCchhhHhhhhhhhhHHHHHHHHHH-HhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 450 VPWFDSV------------------FADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 450 i~~~~~i------------------~~~ig~~~si~~~lstfs~~~~ri~~il-~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+..++++ +..+|.....+.....+|.++++...+. -.++.++|.|||||++++|. ++.++
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk-~g~a~ 168 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK-EGVAL 168 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH-HHHHH
Confidence 2222221 1222333333334456676666555444 45899999999999999998 67777
Q ss_pred HHHHHHHHHhcCCcEEEEEecch
Q 003747 511 GMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~ 533 (798)
...++..-...|+. ||++||..
T Consensus 169 l~~l~~~H~~~GGi-VllttHq~ 190 (209)
T COG4133 169 LTALMAAHAAQGGI-VLLTTHQP 190 (209)
T ss_pred HHHHHHHHhcCCCE-EEEecCCc
Confidence 77777777778885 99999973
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=3.3e-16 Score=201.60 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=111.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----c--------------cccccccc--cccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----G--------------LHILSSEY--AKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G--------------~~vpa~~~--~~i~~~ 453 (798)
++.+.++++++ ..|++++|+||||||||||||+|+++...... | .++|.... ..+.+.
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 46789999999 88999999999999999999999766422110 1 11222100 001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+.++..+|..+.......++|++++ ++..+.+++.+|++|||||||+|+||.....+.
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~ 1101 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 1233445555555556678887775 455566789999999999999999997777765
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+++.+. .|.| ||+|||+++.+ .+|+++..+.+|.+...+
T Consensus 1102 -~lL~~l~-~g~T-IIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1102 -DLLLKYR-SGRT-IIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred -HHHHHHh-CCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 5666665 5787 99999999887 489999999999997654
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=3.1e-16 Score=184.48 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=101.2
Q ss_pred cceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhccccccc----------------------------------
Q 003747 397 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------------------------------- 442 (798)
Q Consensus 397 ~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v---------------------------------- 442 (798)
.+++.+++.-..|++++|+||||+|||||||+|+++.... .|.+.
T Consensus 87 ~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 4678888833889999999999999999999997653322 22211
Q ss_pred ccccccccc------------------hhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 443 LSSEYAKVP------------------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 443 pa~~~~~i~------------------~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
|. .....+ ..+.++..++........++++|++++ ++..+.+++.+|+++||||||+|||
T Consensus 166 ~q-~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 166 PQ-YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cc-chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 00 000000 011233445555555666778887655 5566667789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceee
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 547 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~n 547 (798)
+.....+.. ++..+.+ |.+ ||++||+.++. .+++++..+.+
T Consensus 245 ~~~~~~l~~-~i~~l~~-g~t-vIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 245 IRQRLNVAR-LIRELAE-GKY-VLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHH-HHHHHHC-CCE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 977777754 6677777 887 99999998876 47777766644
No 320
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5.4e-16 Score=175.94 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=114.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cc--------ccccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SG--------LHILS-- 444 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G--------~~vpa-- 444 (798)
+..++.+++|+ ..|++++++|.||+|||||+|+|++...... .| ..+|.
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls 99 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence 45789999999 8999999999999999999999976532211 01 01110
Q ss_pred --------ccccc-cchh---------hHHhhhcCchhhHhhhhhhhhHHHHHHHHHHH-hCCCCeEEEEecCCCCCChH
Q 003747 445 --------SEYAK-VPWF---------DSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 445 --------~~~~~-i~~~---------~~i~~~ig~~~si~~~lstfs~~~~ri~~il~-~a~~psLLLLDEP~sGlDp~ 505 (798)
.+... ++++ ..++..++........+.++|...+++..|+. +..++.+|||||||+.|+..
T Consensus 100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 00000 1111 12344555543366667788877777777764 46788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~-el~~~a~~~~~l~ng~v~fd 553 (798)
+...++. +++.|.+.|.+ ||++||.+ ++..+||++..+.+|.+.-+
T Consensus 180 E~~~Lf~-~ir~Lk~~Gv~-ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 180 ETERLFD-LIRRLKAQGVA-IIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHH-HHHHHHhCCCE-EEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999875 88889999998 99999986 55579999999999998654
No 321
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.64 E-value=7.9e-16 Score=183.29 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=110.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------------------cccccccccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEYAK-- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------------------~G~~vpa~~~~~-- 449 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... ...+++. ....
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q-~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQ-RYHLLS 99 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeC-CcccCC
Confidence 4689999999 8899999999999999999999976532211 0112221 1100
Q ss_pred -cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 450 -VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 450 -i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+...+ .++..++..+.+......+|+++ +++..+.+++.+|++||||||++|||+..
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 01111 11223344444445556677655 45666667789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
...+. .+++.+.+.|.| +|++||+.++...|+++..+.+|++..++
T Consensus 180 ~~~l~-~ll~~l~~~g~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 180 GEEVM-AILHQLRDRGHT-VIIVTHDPQVAAQAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence 77665 466777767887 99999999988889999999999998665
No 322
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.64 E-value=5.1e-16 Score=170.37 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=69.2
Q ss_pred cCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-
Q 003747 460 IGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK- 536 (798)
Q Consensus 460 ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~- 536 (798)
++...........+|+++ +++..+.+++.+|++|||||||+|||+.....+.. ++..+.+ .|.| +|++|||.+..
T Consensus 88 ~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~-~l~~l~~~~g~t-iiivTHd~~e~~ 165 (325)
T TIGR01187 88 VQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL-ELKTIQEQLGIT-FVFVTHDQEEAM 165 (325)
T ss_pred cCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHH
Confidence 344433444556677665 45666667899999999999999999977777655 5555554 4887 99999998765
Q ss_pred hhhccccceeeeEEEEe
Q 003747 537 TLKYSNDFFENACMEFD 553 (798)
Q Consensus 537 ~~a~~~~~l~ng~v~fd 553 (798)
.+|+++..+.+|++...
T Consensus 166 ~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 166 TMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HhCCEEEEEECCEEEEE
Confidence 68999999999998654
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.64 E-value=1e-15 Score=178.88 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=106.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc---
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--- 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--- 450 (798)
+.+++++++++ +.|+.++|+||||||||||+|+|++.... ..|. ++|. +...+
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~t 412 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVFT-DFHLFDQL 412 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEec-ChhHHHHh
Confidence 35689999999 88999999999999999999999764322 1221 1111 00000
Q ss_pred ------c----hhhHHhhhcCchhhHhhh-----hhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 451 ------P----WFDSVFADIGDEQSLSQS-----LSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 451 ------~----~~~~i~~~ig~~~si~~~-----lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
. .....+..++....+... -..+|+ +.+|+..+.+.+.+|++|||||||+|+|+.....+...+
T Consensus 413 i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 413 LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred hccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 001112223332222111 124665 456677777889999999999999999997777776655
Q ss_pred HHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 515 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+.+...+.| +|++||+.+....+|++..+.+|++...
T Consensus 493 ~~~~~~~~~t-vi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 493 LPLLQEMGKT-IFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhCCCE-EEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 5554445787 9999999998889999999999998644
No 324
>PLN03073 ABC transporter F family; Provisional
Probab=99.64 E-value=8.3e-16 Score=184.32 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=61.0
Q ss_pred hhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccc
Q 003747 467 SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDF 544 (798)
Q Consensus 467 ~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~ 544 (798)
.....++|++++ ++..+.+++.+|++|||||||+|||+.....+. +.|...+.| ||++|||.++. .+|+++..
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~----~~L~~~~~t-viivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE----TYLLKWPKT-FIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH----HHHHHcCCE-EEEEECCHHHHHHhCCEEEE
Confidence 345577887665 555566778999999999999999996555443 344445777 99999998876 47899988
Q ss_pred eeeeEEE
Q 003747 545 FENACME 551 (798)
Q Consensus 545 l~ng~v~ 551 (798)
+.+|.+.
T Consensus 414 l~~g~i~ 420 (718)
T PLN03073 414 LHGQKLV 420 (718)
T ss_pred EECCEEE
Confidence 8888774
No 325
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.64 E-value=6.1e-16 Score=183.34 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=111.3
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--ccc------------------cccccccc--cccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG------------------LHILSSEY--AKVP 451 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--q~G------------------~~vpa~~~--~~i~ 451 (798)
+++.+++|+++. +.|++++|+|||||||||||++|++..... ..| .++|.... ..+.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 356799999999 899999999999999999999997643221 011 12222100 0011
Q ss_pred h------------------------hhHHhhhcCchhhHhhhhh------hhhH-HHHHHHHHHHhCCCCeEEEEecCCC
Q 003747 452 W------------------------FDSVFADIGDEQSLSQSLS------TFSG-HLKQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 452 ~------------------------~~~i~~~ig~~~si~~~ls------tfs~-~~~ri~~il~~a~~psLLLLDEP~s 500 (798)
+ .+.++..+|..+..+..+. .+|+ +.+|+..+.+++.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1 1222333443332222222 3664 5567777778899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhccccceeeeEEEEecc
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~--el~~~a~~~~~l~ng~v~fd~~ 555 (798)
|||+.....+.. .++.+...|.| ||++||++ ++..++|++..+.+|++.+.+.
T Consensus 196 gLD~~~~~~l~~-~L~~l~~~g~t-vi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 196 GLDSFMAYSVVQ-VLKGLAQKGKT-IICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred chhHHHHHHHHH-HHHHHHhCCCE-EEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 999987777765 66677777888 99999996 4678999999999999998763
No 326
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=9.1e-16 Score=155.75 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=112.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc--------ccc----------------ccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LSS----------------EYAKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v--------pa~----------------~~~~i 450 (798)
.+.++++++++ ..|+++.|+|.||+||||||++|++-..+...-.++ |.. ....+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46789999999 889999999999999999999997543222100000 000 00011
Q ss_pred ch---------------------------hhHHhh--hcCchhhHhhhhhhhhHHHHH-HHHHHHhCCCCeEEEEecCCC
Q 003747 451 PW---------------------------FDSVFA--DIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 451 ~~---------------------------~~~i~~--~ig~~~si~~~lstfs~~~~r-i~~il~~a~~psLLLLDEP~s 500 (798)
.+ |..-+. .+|.+..+...+.-|||++++ +..+++.+++|++|||||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 11 111111 234555566666678876654 566667799999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEecc
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~~ 555 (798)
+|||.....+...-.+...+.+.| .+++||+++.+ .|.++.+.+.+|.|..|..
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klT-tlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLT-TLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCc-eEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 999988777766555555566777 89999998777 6999999999999998853
No 327
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=4.5e-16 Score=155.73 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=105.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----cccc--ccc-------cccccchh--------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHI--LSS-------EYAKVPWF-------- 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G~~v--pa~-------~~~~i~~~-------- 453 (798)
..++.|++++ .+|++++++||+||||||||++++++.-+.+. |..+ |.. ...-++|.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 3478899999 88999999999999999999999877654431 1111 111 11222322
Q ss_pred ----------------hHHhhhcCchhhHhhhhhhhhHHHHHHHHH-HHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 454 ----------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 454 ----------------~~i~~~ig~~~si~~~lstfs~~~~ri~~i-l~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
.+++...|.++.-.+.+-.+||+|++...+ .+++.+|.+||||||++.+|......+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 122334444444445555678888655544 466899999999999999999999998888888
Q ss_pred HHHhcCCcEEEEEecchhHHh-hhccccce
Q 003747 517 AFAESGSLLTIATTHHGELKT-LKYSNDFF 545 (798)
Q Consensus 517 ~L~~~g~t~VIitTHd~el~~-~a~~~~~l 545 (798)
.+...|.. ++++||+.+.+- ++++.+.+
T Consensus 178 lw~~tgk~-~lliTH~ieEAlflatrLvvl 206 (259)
T COG4525 178 LWQETGKQ-VLLITHDIEEALFLATRLVVL 206 (259)
T ss_pred HHHHhCCe-EEEEeccHHHHHhhhheeEEe
Confidence 88888987 999999988875 45555444
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.63 E-value=9.5e-16 Score=179.06 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=104.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
++.++++++++ +.|+.++|+||||||||||+|+|++.....+ |. ++|. +..-+ .
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~i~~~~~~~~~~~i~~v~q-~~~lf~~t 407 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS-GSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGT 407 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEehhhCCHHHHhhheEEecC-Cccccccc
Confidence 35789999999 8899999999999999999999976532221 21 1221 10000 1
Q ss_pred hhhHHh---------------hhcCchhhH-----------hhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSVF---------------ADIGDEQSL-----------SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i~---------------~~ig~~~si-----------~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++. ...+..+.+ ...-..+|+ +.+|+..+.+++.+|+++||||||+|+|+
T Consensus 408 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~ 487 (544)
T TIGR01842 408 VAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487 (544)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCH
Confidence 112221 001111111 111234564 55677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. .+..+...|.| +|++||+.+....||++..+.+|++...+
T Consensus 488 ~~~~~i~~-~l~~~~~~~~t-vi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 488 EGEQALAN-AIKALKARGIT-VVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHH-HHHHHhhCCCE-EEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 76666654 45555555777 99999999888899999999999987543
No 329
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.63 E-value=1.3e-15 Score=174.02 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc---cccc-------------------------ccccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------------HILSSEY 447 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a---q~G~-------------------------~vpa~~~ 447 (798)
..+..|++|+ ..|++++|+|.+||||||+.++|.++.... ..|. ++|.+..
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 3589999999 899999999999999999999984432111 0111 1221111
Q ss_pred cccc----hhh----------------------HHhhhcCchhhHhh--hhhhhhHHHH-HHHHHHHhCCCCeEEEEecC
Q 003747 448 AKVP----WFD----------------------SVFADIGDEQSLSQ--SLSTFSGHLK-QIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 448 ~~i~----~~~----------------------~i~~~ig~~~si~~--~lstfs~~~~-ri~~il~~a~~psLLLLDEP 498 (798)
+.+. +-+ +++...|..+.... ....|||+|+ |+..+++++.+|+|||+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 1110 001 23444555444443 6677888775 56666788999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
|++||+.....+.. +++.+. +.|.+ +|++|||+.+.. +||++..+.+|.+...+
T Consensus 182 TTaLDvt~q~qIL~-llk~l~~e~g~a-~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 182 TTALDVTTQAQILD-LLKDLQRELGMA-VLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred ccccCHHHHHHHHH-HHHHHHHHcCcE-EEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 99999988888766 555555 66887 999999999884 99999999999997654
No 330
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=172.63 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=112.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccc---------------------------cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------------------------YA 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~---------------------------~~ 448 (798)
..+.+|++|+ ..|++++|+|++|||||||.|+|+++... ..|....... +.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 4578999999 89999999999999999999999765433 2222111000 00
Q ss_pred ccch----------------------hhHHhhhcCchh-hHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 449 KVPW----------------------FDSVFADIGDEQ-SLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 449 ~i~~----------------------~~~i~~~ig~~~-si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+..+ .+.++..+|... .+......||| +.+|+..+.+++.+|.+|++|||+|.||+
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 0000 112233444443 34455567786 45677778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
.-...+...+.+.-.+.|.| .||+|||+.+.. +|+++..+.+|++...+
T Consensus 463 svqa~VlnLl~~lq~e~g~t-~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLT-YLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCE-EEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 88888876555544556888 999999999985 89999999999998655
No 331
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=1.2e-15 Score=156.13 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=84.2
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------ccc------------ccccccccccc---
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------SGL------------HILSSEYAKVP--- 451 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------~G~------------~vpa~~~~~i~--- 451 (798)
+++++ ..| +++|+|||||||||||++|+++..... .|. +++......++
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~ 93 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIIS 93 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEe
Confidence 34444 456 899999999999999999965531110 000 11110000000
Q ss_pred --hhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHH-h----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 003747 452 --WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-Q----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 524 (798)
Q Consensus 452 --~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~-~----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t 524 (798)
..++++.. .+........+|+++++...+.. + ..+|+++|||||++|+|+.....+.. +++.+.+ +.+
T Consensus 94 ~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~t 168 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ETQ 168 (197)
T ss_pred hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CCE
Confidence 01112222 12233445677877665544443 2 25779999999999999977777655 5656654 676
Q ss_pred EEEEEecchhHHhhhccccce
Q 003747 525 LTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 525 ~VIitTHd~el~~~a~~~~~l 545 (798)
||++||+.++..+++++..+
T Consensus 169 -iIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 169 -FIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred -EEEEECCHHHHhhcceEEEE
Confidence 99999999888777776654
No 332
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=152.20 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccc-------------------------ccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-------------------------EYA 448 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~-------------------------~~~ 448 (798)
++....++++|+ ..|++-+|+||||+||||+|..|.+-..... |..+... -..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~-G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE-GEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc-ceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 456789999999 8999999999999999999999965433221 1111000 000
Q ss_pred ccchh-----------------------------hHHhhhcCchhhHhhhhhhhhHHHHHHHHHH-HhCCCCeEEEEecC
Q 003747 449 KVPWF-----------------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEI 498 (798)
Q Consensus 449 ~i~~~-----------------------------~~i~~~ig~~~si~~~lstfs~~~~ri~~il-~~a~~psLLLLDEP 498 (798)
.+.++ +.+++.+|..+......+.+|-+.++...|- ..+++|.|||||||
T Consensus 95 ~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEP 174 (249)
T COG4674 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174 (249)
T ss_pred hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCc
Confidence 01111 1122333333333333444554444444443 34799999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEE
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEF 552 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~f 552 (798)
.+|+...+....+. ++..++. +++ |+++.||+++.+ +++++-.+..|++-.
T Consensus 175 vAGMTd~Et~~tae-Ll~~la~-~hs-ilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 175 VAGMTDAETEKTAE-LLKSLAG-KHS-ILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred cCCCcHHHHHHHHH-HHHHHhc-Cce-EEEEeccHHHHHHhhheeEEEeccceee
Confidence 99998888888876 6666665 455 899999999985 888888888888754
No 333
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.62 E-value=2.2e-15 Score=177.52 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=103.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
+..++++++++ ++|+.++|+||||||||||+|+|+++..+.. | .++|. +..-+ +
T Consensus 347 ~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~T 424 (588)
T PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS-GRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRS 424 (588)
T ss_pred CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC-CEEEECCEEhhhCCHHHHHhheEEEec-Cccccccc
Confidence 35689999999 8899999999999999999999965533221 1 12222 10000 0
Q ss_pred hhhHH---------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ +...+..+.+.. ++ ..+|| +.+|+..+.+++.+|+++||||||+++|+
T Consensus 425 i~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 425 IEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504 (588)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11111 111122221111 11 23564 56777777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.....+...+ ..+. .++| +|++||+......+|++..+.+|++...
T Consensus 505 ~t~~~i~~~l-~~~~-~~~t-vIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 505 ETEAKVKAAL-DELM-KGRT-TFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred HHHHHHHHHH-HHHh-cCCE-EEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 7777765544 3333 3677 9999999999999999999999998743
No 334
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.7e-15 Score=158.76 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=116.0
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--------------ccccccccccccccc-------------
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------KSGLHILSSEYAKVP------------- 451 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--------------q~G~~vpa~~~~~i~------------- 451 (798)
..++++. ++..+++|.|++||||||++++|+++.... ..|.++|. +..+++
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccCh-hhheeeeEeeccccccceE
Confidence 4566666 454799999999999999999998764322 22344443 222222
Q ss_pred ---------------hhhHHhhhcCchhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 452 ---------------WFDSVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 452 ---------------~~~~i~~~ig~~~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
.|+++...+|++.-+.....++||+ .+|++.-.++++.|.|||||||.+.||.....++.- .+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp-yl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-YL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH-HH
Confidence 3566777788888888888899964 566666677899999999999999999977777754 77
Q ss_pred HHHHhc-CCcEEEEEecch-hHHhhhccccceeeeEEEEec
Q 003747 516 EAFAES-GSLLTIATTHHG-ELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 516 ~~L~~~-g~t~VIitTHd~-el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.|.+. ... |+++||.. ++.++|++++.+.||+|...+
T Consensus 172 ERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g 211 (352)
T COG4148 172 ERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKASG 211 (352)
T ss_pred HHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEecC
Confidence 777755 788 99999985 556799999999999997543
No 335
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.2e-15 Score=161.81 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=107.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh---c-cccc-------------------------cccccc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---A-KSGL-------------------------HILSSE 446 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~---a-q~G~-------------------------~vpa~~ 446 (798)
..+.++++|+ ..|++++|+|.+||||||+.+.|.++... . ..|. +++...
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 3588999999 88999999999999999999998654321 0 1111 111100
Q ss_pred cccc----chhhH-----------------------HhhhcCchh---hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEE
Q 003747 447 YAKV----PWFDS-----------------------VFADIGDEQ---SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLL 495 (798)
Q Consensus 447 ~~~i----~~~~~-----------------------i~~~ig~~~---si~~~lstfs~~~~-ri~~il~~a~~psLLLL 495 (798)
...+ .+-+| ++..+|+.+ .+......|||+|+ |+..+++++.+|+|||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 0000 00011 122222221 22334456888775 56666788999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 496 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 496 DEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
||||++||......+.. +++.+.+ .|.+ +|++|||+.++ .+||++..+..|.+...+
T Consensus 178 DEPTTALDvt~QaqIl~-Ll~~l~~e~~~a-iilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 178 DEPTTALDVTVQAQILD-LLKELQREKGTA-LILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred CCCcchhhHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 99999999977777755 7777775 6887 99999999877 599999999999997654
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.61 E-value=2.4e-15 Score=176.13 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=105.9
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccc----cc-
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA----KV- 450 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~----~i- 450 (798)
+++++++++ +.|+.++|+||||||||||+++|++...+. .|. +++. +.. .+
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q-~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSRDDYRDLFSAIFA-DFHLFDDLIG 433 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhhCcEEcc-Chhhhhhhhh
Confidence 589999999 889999999999999999999997543222 221 1111 000 00
Q ss_pred ----c-----hhhHHhhhcCchhhHh---hhh---hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHH
Q 003747 451 ----P-----WFDSVFADIGDEQSLS---QSL---STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 514 (798)
Q Consensus 451 ----~-----~~~~i~~~ig~~~si~---~~l---stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~al 514 (798)
+ .....+...+..+.+. .++ ..+|+ +.+|+..+.+.+.+|+++||||||+++|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0 0001122223332221 111 34665 556677777889999999999999999997777776666
Q ss_pred HHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 515 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 515 l~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
++.+...+.| +|++||+.+....||++..+.+|++..+
T Consensus 514 ~~~~~~~~~t-iiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKRQGKT-IIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCCE-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 6655556787 9999999988889999999999998643
No 337
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.6e-15 Score=172.82 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccc------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSE------ 446 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~------ 446 (798)
++++++.|++++ ++|+.++|+||||||||||+..|++..-..+ |. ++|...
T Consensus 332 ~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gT 410 (559)
T COG4988 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410 (559)
T ss_pred CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC-ceEEECCccccccCHHHHHhHeeeeCCCCcccccc
Confidence 344899999999 8999999999999999999999976533211 11 111100
Q ss_pred -ccccch---------hhHHhhhcCchhhHhh--hh--------hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 447 -YAKVPW---------FDSVFADIGDEQSLSQ--SL--------STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 447 -~~~i~~---------~~~i~~~ig~~~si~~--~l--------stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+.+ ..+....-|..+.+.. ++ +.+| |+.+|+..+.++..+++++|+||||+++|.+
T Consensus 411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e 490 (559)
T COG4988 411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh
Confidence 000000 0011122222222222 22 2345 5667888888889999999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
. ..+....+..+.+. .| ||++||+.+...-+|+++.+.+|.+...+
T Consensus 491 t-E~~i~~~l~~l~~~-kt-vl~itHrl~~~~~~D~I~vld~G~l~~~g 536 (559)
T COG4988 491 T-EQIILQALQELAKQ-KT-VLVITHRLEDAADADRIVVLDNGRLVEQG 536 (559)
T ss_pred H-HHHHHHHHHHHHhC-Ce-EEEEEcChHHHhcCCEEEEecCCceeccC
Confidence 5 44445555555554 66 89999999999999999999999997654
No 338
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=2.7e-15 Score=176.65 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
++++++|++++ +.|+.++|+||||||||||+++|++.. + ..|. ++|. +..-+ +
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q-~~~LF~~T 438 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLPHGT 438 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecC-CCcCCCcC
Confidence 46799999999 899999999999999999999997665 3 3342 1221 00000 0
Q ss_pred hhhHH---------------hhhcCchhhHhh---hh--------hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ---SL--------STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~---~l--------stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ....+..+.+.. ++ ..+| |+++|+..+.+++.+|++||||||||++|+
T Consensus 439 I~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11111 111111111111 11 2355 456778888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.....+...+ ..+. .+.| +|++||..+....+|++..+.+|++..+
T Consensus 519 ~te~~i~~~l-~~~~-~~~T-vIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 519 HSEQLVMQAL-NAAS-RRQT-TLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred HHHHHHHHHH-HHHh-CCCE-EEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 7777766544 4443 4677 8999999999999999999999998654
No 339
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.61 E-value=3.4e-15 Score=178.95 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=104.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
++++++|++++ +.|+.++|+||||||||||+|+|+++..+. .|. ++|. +..-+ .
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gT 542 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVVLQ-NGRLMSGS 542 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhccEEEcc-CCccCccc
Confidence 45799999999 889999999999999999999996543221 121 2222 10000 0
Q ss_pred hhhHH--------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDSV--------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~i--------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+++ ....+..+.+.. ++ ..+|| +.+|+..+.+++.+|++|||||||+++|+.
T Consensus 543 I~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 543 IFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11111 122233332221 11 23564 566777777889999999999999999996
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+...+ .+.++| +|++||+.+....+|++..+.+|++..++
T Consensus 623 te~~i~~~L----~~~~~T-~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 623 TQAIVSESL----ERLKVT-RIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHH----HHhCCe-EEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 666655433 333677 89999999999999999999999998654
No 340
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=168.30 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=105.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccc--------c--ccccchh-----------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS--------E--YAKVPWF----------- 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~--------~--~~~i~~~----------- 453 (798)
+.+..++++|+ ..|++++|+|.||+|||||+++|.++..+...-.++... + ..-|+.+
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 45678889999 899999999999999999999996544332211111000 0 0001111
Q ss_pred --hHH------------------------hhhcCchhhHhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 --DSV------------------------FADIGDEQSLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 --~~i------------------------~~~ig~~~si~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+++ ...+|..=+.+...+.+| ++++++..+.++..++++|||||||+-|-|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111 111222222222333444 34455555557789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhccccceeeeEEE
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 551 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~-el~~~a~~~~~l~ng~v~ 551 (798)
...++. +++.|.+.|+| ||++||-. +..++||++-.+..|++.
T Consensus 176 ~~~lf~-~l~~l~~~G~t-Ii~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 176 ADELFE-ILRRLAAEGKT-IIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHHHHH-HHHHHHHCCCE-EEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999975 78899999998 99999975 566799999999999874
No 341
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.60 E-value=3e-15 Score=175.49 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=103.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc--------------------cccccccccccc--ch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--------------------GLHILSSEYAKV--PW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~--------------------G~~vpa~~~~~i--~~ 452 (798)
+.+++.++++. +.|+.++|+||||+|||||+|+|+++...... -.++|. +..-+ .+
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q-~~~lf~~Ti 422 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ-DVVLFNDTI 422 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc-CcccccccH
Confidence 35689999999 88999999999999999999999654322110 012222 00000 01
Q ss_pred hhH----------------HhhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 453 FDS----------------VFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 453 ~~~----------------i~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.++ .+...|..+.+.. ++ ..+|+ +.+|+..+.+.+.+|+++||||||+++|+
T Consensus 423 ~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~ 502 (571)
T TIGR02203 423 ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN 502 (571)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 111 1222233322221 11 23564 56677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
.....+...+ ..+. .++| +|++||+......||++..+.+|++..
T Consensus 503 ~~~~~i~~~L-~~~~-~~~t-iIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 503 ESERLVQAAL-ERLM-QGRT-TLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHH-HHHh-CCCE-EEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 7777775544 4443 4677 899999999999999999999998864
No 342
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.60 E-value=2.1e-15 Score=179.65 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=103.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
..++.|++++ ++|+.++|+|+||||||||+|++.++..+.+ |. ++|. +..-+ .+
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~-G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~Lf~gSI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ-GRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSI 563 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEeHHhcCHHHHHhheeEEcc-cchhhcCcH
Confidence 4699999999 9999999999999999999999965432221 11 2221 00000 00
Q ss_pred hh------------HH---hhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FD------------SV---FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~------------~i---~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+ ++ ...-|..+.+.. .=..+|| +.++++.+.+++.+|++||||||||+||+.
T Consensus 564 ~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 564 RENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 11 11 111122233321 1123555 456677777889999999999999999996
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.-..+...+.+ +. .|+| +|++||.......||+++.+..|++..++
T Consensus 644 sE~~I~~~L~~-~~-~~~T-~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 644 TEAIILQNLLQ-IL-QGRT-VIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred HHHHHHHHHHH-Hh-cCCe-EEEEEccchHhhhccEEEEccCCceeccC
Confidence 65555554433 22 3577 89999999999999999999999998765
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.60 E-value=2.6e-15 Score=179.17 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=96.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc----------ccccccccc-ccchhhH--------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA-KVPWFDS-------- 455 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G----------~~vpa~~~~-~i~~~~~-------- 455 (798)
++.+..+++++ +.|++++|+||||||||||+|+|+++.. +..| .++|..... .-.+.++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 45789999999 8899999999999999999999977532 2222 123321000 0011111
Q ss_pred --------------HhhhcCchhhHhhh---------hhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 456 --------------VFADIGDEQSLSQS---------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 456 --------------i~~~ig~~~si~~~---------lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
++..++..+.+... ...+|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~ 622 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 22223333322221 14577655 5666677789999999999999999996554443
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHHhhhcccccee
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
+.+.+.|.| +|++||+.++..+|+++..+.
T Consensus 623 ----~~l~~~~~t-vI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 623 ----RLCREFGIT-LFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred ----HHHHHcCCE-EEEEeCchHHHHhCCEEEEEe
Confidence 334445887 999999999988888876653
No 344
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=3.1e-15 Score=175.85 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=104.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
+++++++++++ ++|+.++|+||||||||||+|+|+++..+ ..| .++|. +..-+ .
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q-~~~lf~~T 432 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALVSQ-NVHLFNDT 432 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEEcc-Cceeecch
Confidence 35699999999 88999999999999999999999764322 112 12222 10000 0
Q ss_pred hhhHHh----------------hhcCchhhHh---hhh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 452 WFDSVF----------------ADIGDEQSLS---QSL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 452 ~~~~i~----------------~~ig~~~si~---~~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
+.+++. ...+..+.+. .++ ..+|| +.+|+..+.+++.+|++|||||||+++|
T Consensus 433 i~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 433 IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 111111 1112222111 112 23565 5567777778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+...+. .+. .++| +|++||+.+....||++..+.+|++..++
T Consensus 513 ~~t~~~i~~~l~-~~~-~~~t-vI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 513 TESERAIQAALD-ELQ-KNRT-SLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHH-HHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 977777665444 333 3677 89999999999999999999999987543
No 345
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.60 E-value=2.9e-15 Score=180.21 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=104.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
++++++|++++ +.|+.++|+||||||||||+|+|+++..+. .|. ++|. +..-+ .
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gT 568 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGT 568 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhheeEEec-CChhhhcc
Confidence 35799999999 889999999999999999999996543222 121 2222 10000 0
Q ss_pred hhhHH---------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ....+..+.+.. ++ ..+|| +.+|+..+.+++.+|+++||||||++||+
T Consensus 569 i~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 569 VRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648 (710)
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH
Confidence 11111 111122222211 11 23554 56677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+...+ ...++| +|++||..+....+|++..+.+|++..++
T Consensus 649 ~te~~i~~~l----~~~~~T-~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 649 ETEKIIDDNL----RRRGCT-CIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHH----HhcCCE-EEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 6666655433 345787 89999999999999999999999998654
No 346
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.60 E-value=3.9e-15 Score=178.71 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=104.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
.+++++|++++ +.|+.++|+||||||||||+|+|+++..+.. |. ++|. +..-+ +
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~-G~I~idg~~l~~~~~~~lr~~i~~v~Q-~~~lf~~T 554 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE-GSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGT 554 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEEhhhCCHHHHHhccEEECC-Chhhhhhh
Confidence 35689999999 8899999999999999999999965432221 21 2221 00000 0
Q ss_pred hhhHH---------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ....+..+.+.. ++ ..+|+ +++|+..+.+++.+|+++||||||+++|+
T Consensus 555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 555 LRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 11111 112222222221 11 23565 55677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.....+...+ ..+. .++| +|++||+.+....||++..+.+|++...
T Consensus 635 ~te~~i~~~l-~~~~-~~~T-~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 635 RSEERFKDRL-KRWL-AGKT-LVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred HHHHHHHHHH-HHHh-CCCE-EEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 7777776544 4443 3677 8999999999999999999999998754
No 347
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=3.9e-15 Score=175.14 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=105.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
+.++++++++ +.|+.++|+||||||||||+|+|++..-.. .|. ++|. +..-+ .+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPIADYSEAALRQAISVVSQ-RVHLFSATL 430 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhheeEEcc-cchhhcccH
Confidence 4689999999 889999999999999999999997643221 121 2222 10000 01
Q ss_pred hhH---------------HhhhcCchhhHhh----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS---------------VFADIGDEQSLSQ----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~---------------i~~~ig~~~si~~----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.++ .+...+..+.+.. +-..+|+ +.+|+..+.+++.+|++|||||||+++|+..
T Consensus 431 ~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 431 RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred HHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111 1222333333322 1223564 5567777778899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
...+...+ ..+. .+.| +|++||+......+|++..+.+|++...+
T Consensus 511 ~~~i~~~l-~~~~-~~~t-viiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 511 ERQILELL-AEHA-QNKT-VLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHHHHHH-HHHc-CCCE-EEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 66665544 4443 4677 89999999888889999999999987543
No 348
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=4.2e-15 Score=175.26 Aligned_cols=153 Identities=10% Similarity=0.073 Sum_probs=104.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
+..+++|++++ +.|+.++|+||||||||||+|+|.++.-+. .|. ++|. +..-+ .
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~l~~~i~~v~Q-~~~lF~~T 430 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSLSHSVLRQGVAMVQQ-DPVVLADT 430 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhCCHHHHHhheEEEcc-CCccccch
Confidence 35689999999 899999999999999999999996543222 121 2222 11000 0
Q ss_pred hhhH--------------HhhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS--------------VFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~--------------i~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.++ .....|..+.+.. ++ ..+|| +.+|+..+.+++.+|++|||||||+++|+.
T Consensus 431 i~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 431 FLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 1111 1222233332221 11 23554 567788778889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
....+...+ ..+. .++| +|++||+.+....+|++..+.+|++..+
T Consensus 511 t~~~i~~~l-~~~~-~~~t-vIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 511 TEQAIQQAL-AAVR-EHTT-LVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred HHHHHHHHH-HHHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 766665544 4443 3577 8999999999989999999999999754
No 349
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.60 E-value=5.1e-15 Score=174.51 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=103.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~ 452 (798)
+.++++++++ +.|+.++|+||||||||||+++|++..... .|. ++|. +..- -++
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-VGQILIDGIDINTVTRESLRKSIATVFQ-DAGLFNRSI 425 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC-CCEEEECCEEhhhCCHHHHHhheEEEcc-CCccCcccH
Confidence 4689999999 889999999999999999999997653222 121 1221 1000 001
Q ss_pred hhHHh---------------hhcCchhhH-----------hhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSVF---------------ADIGDEQSL-----------SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i~---------------~~ig~~~si-----------~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+++. ...+..+.+ ...-..+|+ +.+|+..+.+++.+|+++||||||+|+|+.
T Consensus 426 ~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505 (585)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 11111 111111111 111223564 556777777889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. .+..+. .+.| +|++||+.+....+|++..+.+|++...+
T Consensus 506 ~~~~i~~-~l~~~~-~~~t-vI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 506 TEARVKN-AIDALR-KNRT-TFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHHHH-HHHHHh-CCCE-EEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 7666654 444443 4777 89999999888889999999999987543
No 350
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=4.6e-15 Score=174.28 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=103.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
+..++++++++ +.|+.++|+||||||||||+++|+++..+. .|. ++|. +..-+ .
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~t 404 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQLDSWRSRLAVVSQ-TPFLFSDT 404 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCCHHHHHhheEEEcc-CCeecccc
Confidence 35689999999 889999999999999999999997653221 221 1221 00000 0
Q ss_pred hhhHH---------------hhhcCchhhHh-----------hhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~-----------~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ +...+..+.+. ..-..+|+ +.+|+..+.+++.+|+++||||||+|+|+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 11111 11112221111 11123564 45677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+... +..+. .+.| +|++||+.+....+|++..+.+|++...+
T Consensus 485 ~~~~~i~~~-l~~~~-~~~t-ii~itH~~~~~~~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 485 RTEHQILHN-LRQWG-EGRT-VIISAHRLSALTEASEILVMQHGHIAQRG 531 (569)
T ss_pred HHHHHHHHH-HHHHh-CCCE-EEEEecchhHHHcCCEEEEEeCCEEEEec
Confidence 777776554 44443 5777 89999999888889999999999887543
No 351
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.59 E-value=3.9e-15 Score=153.67 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=88.6
Q ss_pred eeEEEC--CCCeEEEEEecCCCCchhhhhhcchhhhhccc--cc------cc-ccccccccch-----------------
Q 003747 401 IDIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GL------HI-LSSEYAKVPW----------------- 452 (798)
Q Consensus 401 ~disL~--~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~--G~------~v-pa~~~~~i~~----------------- 452 (798)
+++.|. .+|++++|+|||||||||+|++|....+-... +. .+ .......+.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 455665 34789999999999999999999632210000 00 00 0000000000
Q ss_pred ----hhH-Hh-hhcCchhhHhhhhhhhhHHHHHHHHH-HHhC----------CCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 453 ----FDS-VF-ADIGDEQSLSQSLSTFSGHLKQIGNI-ISQS----------TSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 453 ----~~~-i~-~~ig~~~si~~~lstfs~~~~ri~~i-l~~a----------~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
+.. ++ ...+....+.....++|+++++...+ .+++ .+|+++|||||++|+|+.....+. .++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 000 00 11123344455566788766554444 3443 267999999999999997777664 466
Q ss_pred HHHHhcCCcEEEEEecchhHHh-hhccccceeeeE
Q 003747 516 EAFAESGSLLTIATTHHGELKT-LKYSNDFFENAC 549 (798)
Q Consensus 516 ~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~ 549 (798)
..+.+.+.| +|++||+.++.. +++....+.+|.
T Consensus 177 ~~~~~~~~t-ii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 177 ELIRTENRM-VGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHhCCCE-EEEEECchHHHHhhCcEEEEEecCC
Confidence 677766887 999999998775 566665555553
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.59 E-value=3.9e-15 Score=189.81 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=106.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-ccccc------------------ccccccc--cccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~------------------~vpa~~~--~~i~~~ 453 (798)
++.+++++++. ++|++++|+|||||||||||++|++.... ...|. +++.... ..+.+.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 34689999999 88999999999999999999999765321 00111 1111000 001111
Q ss_pred ------------------------hHHhhhcCchhhHhhhh-----hhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 454 ------------------------DSVFADIGDEQSLSQSL-----STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 454 ------------------------~~i~~~ig~~~si~~~l-----stfs~~~-~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
+.++..++..+...... ..+|+++ +|+..+.+++.+|++|||||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 11222333332222222 3567655 56666678899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhccccceee-eEEEEecc
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFEN-ACMEFDEV 555 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~e--l~~~a~~~~~l~n-g~v~fd~~ 555 (798)
+.....+. .+++.+.+.|.| ||+|||+.. +..++|+...+.+ |++.+.+.
T Consensus 1052 ~~~a~~v~-~~L~~l~~~g~t-VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1052 ARAAAIVM-RTVRNTVDTGRT-VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHH-HHHHHHHHCCCE-EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 97766664 577778888888 999999975 4578899988886 78877653
No 353
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.59 E-value=2e-15 Score=169.47 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=104.0
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh----------------------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD---------------------- 454 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~---------------------- 454 (798)
.+.++++|+ ..+..++++||||+|||||||++.+. +.+..|...|. ....+++|.
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd-l~p~~G~vs~~-~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~ 481 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD-LQPTIGMVSRH-SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFP 481 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc-ccccccccccc-ccccchhhhhhhHhhcCcchhHHHHHHHhcc
Confidence 577788887 55667999999999999999998543 23334544443 333333322
Q ss_pred ---------HHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 455 ---------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 455 ---------~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
.++.++|.. +.....++++|.++ .++..+..++..|.+|||||||+|+|.....+++ +++.+..+
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~la----eaiNe~~G 557 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA----EAINEFPG 557 (614)
T ss_pred ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHH----HHHhccCC
Confidence 233344443 33344556777555 5666777778999999999999999996655554 46666767
Q ss_pred cEEEEEecchhHH-hhhccccceeeeEEEE
Q 003747 524 LLTIATTHHGELK-TLKYSNDFFENACMEF 552 (798)
Q Consensus 524 t~VIitTHd~el~-~~a~~~~~l~ng~v~f 552 (798)
+ ||+||||..+. +++.++..+.|+.+.-
T Consensus 558 g-vv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 558 G-VVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred c-eeeeechhhHHHHHHHHhHhhccCceee
Confidence 6 89999998776 5999999999988754
No 354
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.58 E-value=4.2e-15 Score=174.48 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=103.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
+.++++++++ ++|+.++|+||||||||||+|+|.++..+. .| .++|. +..-+ .+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i~~~~Q-~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDLRQLDPAELRARMALVPQ-DPVLFAASV 430 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHHhceEEcc-CCccccccH
Confidence 5689999999 889999999999999999999997643222 12 12221 10000 01
Q ss_pred hhHH---------------hhhcCchhhHh-----------hhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i---------------~~~ig~~~si~-----------~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+++ +...+..+.+. ..-..+|+ +.+|+..+.+.+.+|+++||||||+++|+.
T Consensus 431 ~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 431 MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 1111 11112111111 11123554 567778788889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. .+..+. .+.| +|++||+.+....+|++..+.+|++..++
T Consensus 511 ~~~~i~~-~l~~~~-~~~t-~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 511 SEQLVQQ-ALETLM-KGRT-TLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHH-HHHHHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 6665544 444443 4677 99999999999999999999999987543
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=6.4e-15 Score=155.18 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=113.5
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccccc-cc------ccchhhHHhhhcCchh-hHhh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE-YA------KVPWFDSVFADIGDEQ-SLSQ 468 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~-~~------~i~~~~~i~~~ig~~~-si~~ 468 (798)
.+.++++|+ ..|++++|+|.|||||||+-|+|.++.-... |....... .. .......++..+|... .+..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhc
Confidence 578899999 8899999999999999999999965544332 43222101 10 1112334566667544 5556
Q ss_pred hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccce
Q 003747 469 SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFF 545 (798)
Q Consensus 469 ~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l 545 (798)
....|||++ +|+..+.+++.+|+++++|||+|.||......+. .++..+.+ .|.+ .+++|||..++. +++++..+
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt-~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLT-YLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCe-EEEEEEEHHhhhhhcccEEEE
Confidence 667888654 6677777889999999999999999996666665 46666765 4887 999999999986 78888888
Q ss_pred eeeEEEEec
Q 003747 546 ENACMEFDE 554 (798)
Q Consensus 546 ~ng~v~fd~ 554 (798)
..|.+...+
T Consensus 184 y~G~iVE~g 192 (268)
T COG4608 184 YLGKIVEIG 192 (268)
T ss_pred ecCceeEec
Confidence 899887543
No 356
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.58 E-value=7.4e-15 Score=176.68 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=104.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
++.+++|++++ +.|+.++|+||||||||||+|+|+++..+. .| .++|. +..-+ +
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gT 563 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQ-EPYIFSGS 563 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-CcEEEECCEEHHHcCHHHHHHheEEEec-CceehhHH
Confidence 45789999999 889999999999999999999996543221 12 12222 10000 0
Q ss_pred hhhHH----------------hhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCC
Q 003747 452 WFDSV----------------FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTN 503 (798)
Q Consensus 452 ~~~~i----------------~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlD 503 (798)
+.+++ ....+..+.+.. +-..+|+ +.+|+..+.+.+.+|++|||||||+++|
T Consensus 564 I~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 11111 111222222211 1123554 5567777778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.....+...+. .+ .++| +|++||+.+....+|++..+.+|++..++
T Consensus 644 ~~te~~i~~~L~-~~--~~~T-~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 644 TITEKKIVNNLL-NL--QDKT-IIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHHH-Hh--cCCE-EEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 977666655444 33 4677 89999999999999999999999987654
No 357
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.5e-15 Score=164.86 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=109.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccc------cc----cccc-------hh----
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS------EY----AKVP-------WF---- 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~------~~----~~i~-------~~---- 453 (798)
...+++||+|+ ..|+-++|+|++||||||++.++.+... ++.|...... .. ..+. +|
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tl 428 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHH
Confidence 34799999999 8888899999999999999999964322 2223322110 00 0111 11
Q ss_pred -h---------------HHhhhcCchhhHhhh---h--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 454 -D---------------SVFADIGDEQSLSQS---L--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 454 -~---------------~i~~~ig~~~si~~~---l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+ .++...|.++-+... + ..||| +.+|+..+..+.++.+++||||||.||||.
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 0 122333444333322 1 23554 567777777788999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEecc
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
.-..+...+.+++. |+| +|++||+..-.+.+|++..+.||++..++.
T Consensus 509 TE~~vL~ll~~~~~--~kT-ll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 509 TERQVLALLFEHAE--GKT-LLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred hHHHHHHHHHHHhc--CCe-EEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 88887765555443 777 999999999999999999999999988763
No 358
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.57 E-value=9.8e-15 Score=175.30 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=104.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
++.+++++++. +.|+.++|+||||||||||+|+|+++..+.+ | .++|. +..-+ .
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~-G~I~idg~~i~~~~~~~~r~~i~~v~q-~~~lf~~t 546 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH-GQVLVDGVDLAIADPAWLRRQMGVVLQ-ENVLFSRS 546 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEehhhCCHHHHHHhCeEEcc-CCeehhhh
Confidence 35689999999 8899999999999999999999976532221 2 12222 10000 0
Q ss_pred hhhHH---------------hhhcCchhhHh-----------hhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~-----------~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ....+..+.+. .+-..+|+ +++++..+.+++.+|+++||||||+|+|+
T Consensus 547 i~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~ 626 (694)
T TIGR01846 547 IRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626 (694)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 11111 11122222221 11234564 55677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+...+ ..+ ..+.| +|++||+.+....+|++..+.+|++..++
T Consensus 627 ~~~~~i~~~l-~~~-~~~~t-~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 627 ESEALIMRNM-REI-CRGRT-VIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHH-HHH-hCCCE-EEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 7766665544 444 34677 99999999988889999999999998654
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.5e-14 Score=142.53 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=102.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------c---------------------c---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------H---------------------I--- 442 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------~---------------------v--- 442 (798)
..-+.+++|+ -+|++++|+|.+||||||||++|..-.. ++.|. + +
T Consensus 19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQn 97 (258)
T COG4107 19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQN 97 (258)
T ss_pred CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecC
Confidence 3456788888 7889999999999999999999953211 11111 0 0
Q ss_pred cc-------ccccccch---------hh-------HHhhhcCc-hhhHhhhhhhhhHHHHHHHHHH-HhCCCCeEEEEec
Q 003747 443 LS-------SEYAKVPW---------FD-------SVFADIGD-EQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDE 497 (798)
Q Consensus 443 pa-------~~~~~i~~---------~~-------~i~~~ig~-~~si~~~lstfs~~~~ri~~il-~~a~~psLLLLDE 497 (798)
|. ..+..++- +. ..+....+ ...++....+||++|++...|. .+++.|.|+++||
T Consensus 98 P~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDE 177 (258)
T COG4107 98 PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177 (258)
T ss_pred ccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecC
Confidence 10 00111110 00 01111111 1233445678999998766665 5689999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEEec
Q 003747 498 IGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 554 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~ 554 (798)
||.|||..-.+.+.. +++.|. +.|.. ++++|||...+. ++++...+..|.+...+
T Consensus 178 PTGGLDVSVQARLLD-llrgLv~~l~la-~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 178 PTGGLDVSVQARLLD-LLRGLVRELGLA-VVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred CCCCcchhhHHHHHH-HHHHHHHhcCce-EEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999966666654 666654 66887 899999999987 67788888888886543
No 360
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.57 E-value=1.4e-14 Score=154.25 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=70.4
Q ss_pred cCchh-hHhhhhhhhhHHHHH-HHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 460 IGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 460 ig~~~-si~~~lstfs~~~~r-i~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
+|... .+.+..+++|+++++ +..+..++.+ |+++||||||+|||+.+...+.. ++..+.+.|.| ||++||+++
T Consensus 156 vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~t-vIiitH~~~ 233 (261)
T cd03271 156 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNT-VVVIEHNLD 233 (261)
T ss_pred cCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHH
Confidence 44443 345566778876654 4444455554 79999999999999988877755 66777778888 999999999
Q ss_pred HHhhhccccce------eeeEEEEec
Q 003747 535 LKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 535 l~~~a~~~~~l------~ng~v~fd~ 554 (798)
+...|+++..+ .+|++.+.+
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~G 259 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASG 259 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeC
Confidence 88889988888 688887653
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.56 E-value=8.6e-15 Score=186.80 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=105.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--ccccc-----------------ccccccc--cccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGL-----------------HILSSEY--AKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G~-----------------~vpa~~~--~~i~~~ 453 (798)
++.+++++++. ++|++++|+|||||||||||++|++.... ...|. ++|.... ....+.
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 35689999999 88999999999999999999999765421 11111 2221100 001111
Q ss_pred h------------------------HHhhhcCchhhHhhhhh----hhhHHH-HHHHHHHHhCCCCe-EEEEecCCCCCC
Q 003747 454 D------------------------SVFADIGDEQSLSQSLS----TFSGHL-KQIGNIISQSTSQS-LVLLDEIGAGTN 503 (798)
Q Consensus 454 ~------------------------~i~~~ig~~~si~~~ls----tfs~~~-~ri~~il~~a~~ps-LLLLDEP~sGlD 503 (798)
+ +++..++..+..+..+. .+|+++ +++..+.+++.+|+ +|||||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 1 12222233222222222 467655 55666667889996 999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEecchhH--Hhhhccccceeee-EEEEec
Q 003747 504 PLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKYSNDFFENA-CMEFDE 554 (798)
Q Consensus 504 p~eg~al~~all~~L~~~g~t~VIitTHd~el--~~~a~~~~~l~ng-~v~fd~ 554 (798)
+.....+. .+++.+++.|.| ||+|||++.. ...+|++..+.+| ++.+.+
T Consensus 935 ~~~~~~i~-~~L~~la~~g~t-vI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 935 SQTAWSIC-KLMRKLADHGQA-ILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HHHHHHHH-HHHHHHHHcCCE-EEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 97666664 577777778888 9999999764 3678999899887 887755
No 362
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.56 E-value=1.1e-14 Score=175.28 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=100.9
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~~ 452 (798)
+++++|++++ +.|+.++|+||||||||||+|+|.++... +.|. ++|. +..-+ ++
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lF~gTI 571 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVALVGQ-EPVLFSGSV 571 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceEEec-CccccccCH
Confidence 5789999999 88999999999999999999999654322 1121 2221 10000 01
Q ss_pred hhHH---------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSV---------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i---------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+++ ....+..+.+.. ++ ..+|+ +.+|+..+.+.+.+|+++||||||+++|+.
T Consensus 572 reNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 572 RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 1111 111222222111 11 23554 566777777889999999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. .....+.| +|++||+.+....+|+++.+.+|++...+
T Consensus 652 te~~i~~----~~~~~~~T-vIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 652 CEQLLQE----SRSRASRT-VLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred HHHHHHH----hhccCCCe-EEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 5444332 22235677 99999999999999999999999997654
No 363
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.1e-14 Score=161.94 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=110.8
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh-------------------hccccccccccccccc--ch
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-------------------MAKSGLHILSSEYAKV--PW 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~-------------------~aq~G~~vpa~~~~~i--~~ 452 (798)
++++|+.+++++ +.|+-++|+|+|||||||+||+|-.+.- +-+.-.++|+ +..-+ .+
T Consensus 363 ~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ-d~~LFndTI 441 (591)
T KOG0057|consen 363 PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQ-DSVLFNDTI 441 (591)
T ss_pred CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCC-cccccchhH
Confidence 345699999999 8888899999999999999999832210 0111124554 21111 01
Q ss_pred ---------------hhHHhhhcCchhhHhhhh---hh--------hh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 ---------------FDSVFADIGDEQSLSQSL---ST--------FS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ---------------~~~i~~~ig~~~si~~~l---st--------fs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+-.+..+.+..+.+..-. +| +| |++|+++.+.+.+.+|+++++|||||.||..
T Consensus 442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence 111233445555443322 11 23 5678888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.-..+...+.. ...+.| +|++-|++.+...+|++..+.||.|...+
T Consensus 522 TE~~i~~~i~~--~~~~rT-vI~IvH~l~ll~~~DkI~~l~nG~v~e~g 567 (591)
T KOG0057|consen 522 TEREILDMIMD--VMSGRT-VIMIVHRLDLLKDFDKIIVLDNGTVKEYG 567 (591)
T ss_pred hHHHHHHHHHH--hcCCCe-EEEEEecchhHhcCCEEEEEECCeeEEec
Confidence 87777776666 345777 89999999999999999999999997644
No 364
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=1e-14 Score=150.87 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=55.5
Q ss_pred HhhhhhhhhHHHHHHHHHHH-hC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003747 466 LSQSLSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 540 (798)
Q Consensus 466 i~~~lstfs~~~~ri~~il~-~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~ 540 (798)
.......+|+++++...+.. .+ .+|++++||||++|+||.....+. .++..+. .+.+ +|++||+.++..+|+
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~-~~~~-~iivs~~~~~~~~~d 197 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERT-KNAQ-FIVISLRNNMFELAD 197 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHc-CCCE-EEEEECcHHHHHhCC
Confidence 34445667777765555543 32 368999999999999997776664 4666664 3566 788999988888898
Q ss_pred cccce
Q 003747 541 SNDFF 545 (798)
Q Consensus 541 ~~~~l 545 (798)
++..+
T Consensus 198 ~v~~~ 202 (212)
T cd03274 198 RLVGI 202 (212)
T ss_pred EEEEE
Confidence 87665
No 365
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.53 E-value=2.6e-14 Score=166.25 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=93.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~ 452 (798)
+++.++++++ ++|+.++|+||||||||||+|+|+++..+.. |. ++|. +..- -.+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~I~~~g~~i~~~~~~~lr~~i~~v~Q-~~~lf~~ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE-GSIAVNGVPLADADADSWRDQIAWVPQ-HPFLFAGTI 412 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEehhhCCHHHHHhheEEEcC-CCcccCcCH
Confidence 4689999999 8899999999999999999999965432221 11 1221 0000 001
Q ss_pred hhHH---------------hhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSV---------------FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i---------------~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+++ +...+..+.+.. .-..+|| +.+|+..+.+++.+|+++||||||+++|+.
T Consensus 413 ~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~ 492 (529)
T TIGR02857 413 AENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 1111 111222222211 1124565 456777777889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
....+...+. .+. .++| +|++||+.+....||++..
T Consensus 493 ~~~~i~~~l~-~~~-~~~t-~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 493 TEALVTEALR-ALA-QGRT-VLLVTHRLALAERADRIVV 528 (529)
T ss_pred HHHHHHHHHH-Hhc-CCCE-EEEEecCHHHHHhCCEEEe
Confidence 7777765444 333 5677 8999999988887877643
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.53 E-value=2.6e-14 Score=184.04 Aligned_cols=155 Identities=13% Similarity=0.177 Sum_probs=106.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc-ccchhhHHh--------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF-------- 457 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~-~i~~~~~i~-------- 457 (798)
++.+++|++|. +.|++++|+|||||||||||++|.+..... .| .++|..... ...+.+++.
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 45689999999 899999999999999999999997643221 12 123321100 001111111
Q ss_pred ------h---------hc--CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 458 ------A---------DI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 458 ------~---------~i--g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
. .+ |+...+......+|+++ +|+..+.+++.+|+++|||||+++||+.....+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 1 11 22222233344567554 566777778999999999999999999777777665543333
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.|.| +|++||+.++..+++++..+.+|.+.++
T Consensus 831 -~~~T-vIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 831 -AGKT-RVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred -CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 4777 9999999999999999999999998764
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.53 E-value=2.2e-14 Score=175.99 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=108.1
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccc-------------cccccchhhHH--------
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-------------EYAKVPWFDSV-------- 456 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~-------------~~~~i~~~~~i-------- 456 (798)
+.+++++. +.|++.++.|||||||||++|++.+...+...-.++... .-...|.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 66788888 889999999999999999999986543322211111100 00111112222
Q ss_pred -----------------------hhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 457 -----------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 457 -----------------------~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
+..++.........+++|++++ ++..+++.+.+|++++||||++|+||.. +...+
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~a-rr~lW 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA-RRHLW 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHH-HHHHH
Confidence 2223333444445567787765 4666778899999999999999999955 55557
Q ss_pred HHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeEEEEe
Q 003747 513 SLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 553 (798)
Q Consensus 513 all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd 553 (798)
.++..+.+.|.. +|+|||.++.++ +|++...+.+|++.--
T Consensus 739 ~ii~~~~k~g~a-iiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 739 DIIARLRKNGKA-IILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred HHHHHHHhcCCE-EEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 888888888766 999999999885 9999999999999763
No 368
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.53 E-value=3e-14 Score=146.47 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=57.0
Q ss_pred hhhhhhhhHHHHHH-------HHHHHhCCCCeEEEEecCCCCCChHHHH-HHHHHHHHHHHhc-CCcEEEEEecchhHHh
Q 003747 467 SQSLSTFSGHLKQI-------GNIISQSTSQSLVLLDEIGAGTNPLEGT-ALGMSLLEAFAES-GSLLTIATTHHGELKT 537 (798)
Q Consensus 467 ~~~lstfs~~~~ri-------~~il~~a~~psLLLLDEP~sGlDp~eg~-al~~all~~L~~~-g~t~VIitTHd~el~~ 537 (798)
......+|+++++. ..+.+.+.+|+++|||||++|+|+.... .+.. ++..+.+. |.+ ||++||+.++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~~~~~-iiiitH~~~~~~ 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQKNFQ-LIVITHDEELVD 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhccCCE-EEEEEecHHHHh
Confidence 34556777766653 3344567999999999999999997777 6654 66666655 777 999999998887
Q ss_pred hhccccce
Q 003747 538 LKYSNDFF 545 (798)
Q Consensus 538 ~a~~~~~l 545 (798)
.++++..+
T Consensus 188 ~~d~i~~l 195 (204)
T cd03240 188 AADHIYRV 195 (204)
T ss_pred hCCEEEEE
Confidence 77766554
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.52 E-value=3.2e-14 Score=182.82 Aligned_cols=154 Identities=18% Similarity=0.111 Sum_probs=106.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc-ccchhhHHh---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 457 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~-~i~~~~~i~--------- 457 (798)
++++.|++++ +.|++++|+|||||||||||++|.+...... | .|+|..... ...+.+++.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~-G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE-GKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 4689999999 8899999999999999999999976533221 2 122321000 001122221
Q ss_pred -----hhcCchhhH-----------hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 458 -----ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 458 -----~~ig~~~si-----------~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
...+..+.+ ...-.++|+++ +|+..+.+.+.+|+++|||||++|+|+.....+...++..+.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~- 596 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM- 596 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 111111111 11224567655 566667778899999999999999999888888765555544
Q ss_pred cCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 521 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 521 ~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.|.| +|++||+.+....||++..+.+|.+..+
T Consensus 597 ~~~t-vilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 597 SNKT-RILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCCe-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 4777 9999999998888999999999998764
No 370
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=3e-14 Score=181.93 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=106.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh---hccccc--------------------cccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM---MAKSGL--------------------HILSSE--YAK 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~---~aq~G~--------------------~vpa~~--~~~ 449 (798)
.+.+++|+++. +.|++++|+||||||||||||+|++... ....|. +++... ...
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 35799999999 8999999999999999999999976531 111111 111100 000
Q ss_pred cchhhH-----------------------------HhhhcCchhhHhhh-----hhhhhHH-HHHHHHHHHhCCCCeEEE
Q 003747 450 VPWFDS-----------------------------VFADIGDEQSLSQS-----LSTFSGH-LKQIGNIISQSTSQSLVL 494 (798)
Q Consensus 450 i~~~~~-----------------------------i~~~ig~~~si~~~-----lstfs~~-~~ri~~il~~a~~psLLL 494 (798)
+.+.+. ++..+|..+..... ...+|++ ++|+..+.+++.+|+++|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 111111 12222222211111 1235654 566677778899999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecch--hHHhhhccccceeeeEEEEec
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~--el~~~a~~~~~l~ng~v~fd~ 554 (798)
|||||+|||+.....+.. +++.+.+ .|.| ||+++|+. ++..++|++..+.+|++.+.+
T Consensus 233 lDEPTsgLD~~~~~~i~~-~L~~la~~~g~t-vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIR-ALKTSANILDTT-PLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred EeCCCCCcCHHHHHHHHH-HHHHHHHhcCCE-EEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 999999999977777755 6667775 4887 89999984 566799999999999998865
No 371
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=3.5e-14 Score=167.80 Aligned_cols=157 Identities=21% Similarity=0.260 Sum_probs=113.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--cccc------------------cccccccccc-----
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSG------------------LHILSSEYAK----- 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G------------------~~vpa~~~~~----- 449 (798)
.+.++++++.. ..|++++|+||+||||||||++|++.... ...| .|++. +..-
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q-dD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQ-DDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcc-ccccccccc
Confidence 46799999998 89999999999999999999999654321 0111 11221 0000
Q ss_pred ----------------------cchhhHHhhhcCchhhHhhhhh-----hhh-HHHHHHHHHHHhCCCCeEEEEecCCCC
Q 003747 450 ----------------------VPWFDSVFADIGDEQSLSQSLS-----TFS-GHLKQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 450 ----------------------i~~~~~i~~~ig~~~si~~~ls-----tfs-~~~~ri~~il~~a~~psLLLLDEP~sG 501 (798)
-..++.+...+|.....+..+. ..| |+.+|+..++.++++|++|+|||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 0112334455555432222222 233 578889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhccccceeeeEEEEecc
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~--el~~~a~~~~~l~ng~v~fd~~ 555 (798)
||...+..+.. +++.++..|.| ||+|=|.+ ++..+-|+...+.+|++.|.+.
T Consensus 201 LDS~sA~~vv~-~Lk~lA~~grt-Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 201 LDSFSALQVVQ-LLKRLARSGRT-VICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred cchhhHHHHHH-HHHHHHhCCCE-EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 99988877754 77788888998 99999984 6667889999999999998764
No 372
>PLN03140 ABC transporter G family member; Provisional
Probab=99.50 E-value=2.8e-14 Score=182.10 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=65.5
Q ss_pred hhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecch--hHHhhhcccccee
Q 003747 471 STFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFE 546 (798)
Q Consensus 471 stfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~--el~~~a~~~~~l~ 546 (798)
..+|++ .+|+..+.+++.+|+++||||||+|||+.....+.. +++.+.. .|.| +|+++|+. ++..++|++..+.
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~T-viis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEAT-VLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCE-EEEEecCCCHHHHHHhheEEEee
Confidence 345654 456666667799999999999999999988888765 5566655 5777 89999974 6678999999999
Q ss_pred eeEEEEec
Q 003747 547 NACMEFDE 554 (798)
Q Consensus 547 ng~v~fd~ 554 (798)
+|++.+.+
T Consensus 413 ~G~ivy~G 420 (1470)
T PLN03140 413 EGQIVYQG 420 (1470)
T ss_pred CceEEEeC
Confidence 99998865
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.50 E-value=1e-13 Score=155.12 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=106.6
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---------------------cccccccccccccch
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEYAKVPW 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---------------------~G~~vpa~~~~~i~~ 452 (798)
..+++..+++|. ..|+.++|+||+|||||||.|+|.++..... .| |.|..-...-+-
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG-YLPQdVeLF~GT 425 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG-YLPQDVELFDGT 425 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC-cCcccceecCCc
Confidence 346899999999 8899999999999999999999955432221 11 233200000000
Q ss_pred hhHHhhhcCc----------------hhhHh-----------hhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 453 FDSVFADIGD----------------EQSLS-----------QSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 453 ~~~i~~~ig~----------------~~si~-----------~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
..+-..+|+. .+-+. ..=+++| |+.+|+..+.++-.+|.|++||||-++||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 1111222321 11111 1112455 456788888888999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEE
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 551 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~ 551 (798)
.--.++..++ ..++.+|+| +|++||-..+...+|++..+.+|.|.
T Consensus 506 ~GE~AL~~Ai-~~~k~rG~~-vvviaHRPs~L~~~Dkilvl~~G~~~ 550 (580)
T COG4618 506 EGEAALAAAI-LAAKARGGT-VVVIAHRPSALASVDKILVLQDGRIA 550 (580)
T ss_pred hHHHHHHHHH-HHHHHcCCE-EEEEecCHHHHhhcceeeeecCChHH
Confidence 5555665544 467888998 99999999999999999999999985
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=5.5e-14 Score=147.31 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=54.3
Q ss_pred hhhhhhhHHHHHHHHHH-HhC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 468 QSLSTFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 468 ~~lstfs~~~~ri~~il-~~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
.....+|+++++...+. +++ .+|+++||||||+|+||.....+.. .+..+.. +.+ +|++||+.++..+|+++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~-~~~-ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD-GAQ-FITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCE-EEEEecCHHHHhhCCEE
Confidence 34566787766544444 342 4689999999999999977776654 5555554 665 89999998888888887
Q ss_pred cce
Q 003747 543 DFF 545 (798)
Q Consensus 543 ~~l 545 (798)
..+
T Consensus 231 ~~l 233 (243)
T cd03272 231 YGV 233 (243)
T ss_pred EEE
Confidence 654
No 375
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.3e-14 Score=160.36 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=97.8
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhh--hc----ccccccccccc---cccc-------------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--MA----KSGLHILSSEY---AKVP------------- 451 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~--~a----q~G~~vpa~~~---~~i~------------- 451 (798)
|++..+++-+++ ..|+-.+++||||+|||||||+|+...+ +. -.|.++++... +...
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 566677766666 5567799999999999999999964111 00 01333332100 0000
Q ss_pred ------hhhHHhhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003747 452 ------WFDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 523 (798)
Q Consensus 452 ------~~~~i~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~ 523 (798)
+.+.++..+|..+ -..+...+|||+.+ ++..+.++..+|+||||||||+-||. .++++ +-.+|...+.
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv---~av~W-Le~yL~t~~~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV---VAVAW-LENYLQTWKI 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh---HHHHH-HHHHHhhCCc
Confidence 1111333445433 33455678898864 67777778899999999999888887 44544 6678888888
Q ss_pred cEEEEEecchhHHh-hhccccceee
Q 003747 524 LLTIATTHHGELKT-LKYSNDFFEN 547 (798)
Q Consensus 524 t~VIitTHd~el~~-~a~~~~~l~n 547 (798)
| +|+||||..+.. .|..++.+++
T Consensus 247 T-~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 247 T-SLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred e-EEEEeccHHHHHHHHHHHHHHhh
Confidence 7 999999999885 7777766655
No 376
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.47 E-value=8.9e-14 Score=177.99 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=61.3
Q ss_pred hhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeee
Q 003747 471 STFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENA 548 (798)
Q Consensus 471 stfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng 548 (798)
..+|++ .+|+..+.+++.+|++|||||||++||+.....+. ..++.+.. .|.| +|++||+......||++..+.+|
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~T-vIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRI-TIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCE-EEEEeCCHHHHHhCCEEEEEeCC
Confidence 346654 46677777889999999999999999996666554 45555654 5787 99999999888899999999887
Q ss_pred E
Q 003747 549 C 549 (798)
Q Consensus 549 ~ 549 (798)
+
T Consensus 656 ~ 656 (1466)
T PTZ00265 656 E 656 (1466)
T ss_pred c
Confidence 4
No 377
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.47 E-value=1.3e-13 Score=160.47 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=85.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------------------cccccccccc--chh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEYAKV--PWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------------------~vpa~~~~~i--~~~ 453 (798)
+.+++|++++ +.|+.++|+||||||||||+|+|.++.... .|. ++|. +..-+ .+.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~~~~~lr~~i~~V~Q-~~~lF~~TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSSLQDELRRRISVFAQ-DAHLFDTTVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhHHHHHHhheEEEcc-CcccccccHH
Confidence 4699999999 899999999999999999999996543221 121 2332 10000 011
Q ss_pred hHH---------------hhhcCchhhHhh---hh--------hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSV---------------FADIGDEQSLSQ---SL--------STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i---------------~~~ig~~~si~~---~l--------stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+++ +...+..+.+.. ++ ..+| |+.+|+..+.+++.+|+++|||||||++|+..
T Consensus 426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111 112222222221 11 2355 45677788888899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
...+...+. .+ ..+.| +|++||+.
T Consensus 506 e~~I~~~l~-~~-~~~~T-vIiItHrl 529 (529)
T TIGR02868 506 ESELLEDLL-AA-LSGKT-VVVITHHL 529 (529)
T ss_pred HHHHHHHHH-Hh-cCCCE-EEEEecCC
Confidence 666655443 32 34677 89999973
No 378
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=2.8e-13 Score=143.05 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHHHH-HhC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 471 STFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 471 stfs~~~~ri~~il-~~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
..+|+++++...+. +++ .+|+++|||||++|+|+.....+.. ++..+.+.|.+ +|++||+.++..+|+++..+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~-vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQ-FIVISLKEEFFSKADALVGV 231 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcE-EEEEECCHHHHhhCCeEEEE
Confidence 56676665544444 333 3589999999999999977777755 56666666887 99999999998888877654
No 379
>PLN03232 ABC transporter C family member; Provisional
Probab=99.45 E-value=3.5e-13 Score=173.57 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=106.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccccc--chhhHH---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYAKV--PWFDSV--------- 456 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~~i--~~~~~i--------- 456 (798)
++++.|++++ +.|+.++|+||+||||||||++|.+.......+ .++|. +..-+ .+.+++
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q-~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQ-VSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcC-ccccccccHHHHhhcCCccCHH
Confidence 5789999999 899999999999999999999996543322211 12232 10000 111111
Q ss_pred -----hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 457 -----FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 457 -----~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
+..-+..+.+.. +. ..+|| +.+|+..+.+...+|+++||||||+++|+..+..+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 111122222211 11 23565 55677777788999999999999999999888877766665433
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+.| +|++||+......+|+++.+.+|++...
T Consensus 789 -~~kT-~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 789 -KGKT-RVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred -cCCE-EEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 5677 8999999999899999999999998754
No 380
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.44 E-value=2.8e-13 Score=159.09 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=102.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
++.+.+|+++. +.|+.++|+|||||||||++++|..+.-. +.|. ++|. +..-+ .
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Q-d~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGT 418 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcc-cceeeccc
Confidence 56899999999 88999999999999999999999643221 1111 2232 10000 0
Q ss_pred hhhHH---------------hhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ...-+..+.+.. +=..+|+ +.+++..+.+.+.+|++|+|||||+++|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 11111 011111111111 1123554 56677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
..-..+..++. .+. ++.| +|+++|.......||++..+.+|++...+
T Consensus 499 ~tE~~I~~~l~-~l~-~~rT-~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 499 ETEALIQDALK-KLL-KGRT-TLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred HhHHHHHHHHH-HHh-cCCE-EEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 77666665554 444 4567 78899998888789999999999976554
No 381
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=2.1e-13 Score=131.73 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=98.4
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc--ccc---------cccccccccccch----------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG---------LHILSSEYAKVPW---------- 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a--q~G---------~~vpa~~~~~i~~---------- 452 (798)
++...+-+++++ ..|+++-|+||+||||||||--+++..-.. ..| ..+|+ ....+++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa-~qRq~GiLFQD~lLFph 91 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-AQRQIGILFQDALLFPH 91 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-hhhheeeeecccccccc
Confidence 356677888888 889999999999999999999875432100 001 11222 1111111
Q ss_pred -----------------------hhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 453 -----------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 453 -----------------------~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+..+..+|......+...++||++ .|++....++..|.++|||||+|.||..-..
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 1122444555555556666777655 4666667778999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003747 509 ALGMSLLEAFAESGSLLTIATTHHGELKT 537 (798)
Q Consensus 509 al~~all~~L~~~g~t~VIitTHd~el~~ 537 (798)
..-..+...+...|.. ++.+|||++-..
T Consensus 172 qfR~wVFs~~r~agiP-tv~VTHD~~Dvp 199 (213)
T COG4136 172 QFRQWVFSEVRAAGIP-TVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHhcCCC-eEEEecccccCC
Confidence 8777788888899998 899999976544
No 382
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=4.3e-13 Score=163.64 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=100.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-cccc---------cccccchhhH--------H
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSS---------EYAKVPWFDS--------V 456 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-vpa~---------~~~~i~~~~~--------i 456 (798)
+..|+++++|. +.|+.++|+|||||||||++++|..+.-+ ..|.. +... ....++++.| +
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI 443 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTI 443 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccH
Confidence 45789999999 99999999999999999999999543222 11211 1000 0001111110 1
Q ss_pred hhh--cCc-----------------hhhHh---hhhh--------hhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 457 FAD--IGD-----------------EQSLS---QSLS--------TFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 457 ~~~--ig~-----------------~~si~---~~ls--------tfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
... +|. .+.+. .++. .+|| +.+|++.+.+++.+|++|||||||++||+
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~- 522 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA- 522 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCH-
Confidence 110 111 11111 1111 1444 45677777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
+...+.+..++.+ ..|.| .|+++|.+.-.+-+|.+..+.+|++..
T Consensus 523 ~se~~Vq~ALd~~-~~grT-TivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 523 ESERVVQEALDKA-SKGRT-TIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHHHHHh-hcCCe-EEEEeeehhhhhccCEEEEEECCEEEE
Confidence 5555556666654 45677 799999988888899999999999964
No 383
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=2.7e-13 Score=174.78 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=104.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc-ccchhhHHh---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 457 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~-~i~~~~~i~--------- 457 (798)
.++++|++++ +.|++++|+|||||||||||++|.+..... .| .++|..... ...+.+++.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC-CcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 4689999999 889999999999999999999997643221 12 123321000 001111111
Q ss_pred -----hhcCchh-----------hHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH-H
Q 003747 458 -----ADIGDEQ-----------SLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF-A 519 (798)
Q Consensus 458 -----~~ig~~~-----------si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L-~ 519 (798)
...+..+ .+...-..+||+ .+|+..+.+...+|+++||||||+++|+.....+...+.... .
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 1111111 111222456655 456777778899999999999999999988888776665321 1
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
..+.| +|++||+.+....+|++..+.+|.+...
T Consensus 810 ~~~~t-vIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 810 LKNKT-RILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred hcCCE-EEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 24677 8999999998888999999999998754
No 384
>PLN03130 ABC transporter C family member; Provisional
Probab=99.43 E-value=5.4e-13 Score=172.41 Aligned_cols=155 Identities=10% Similarity=0.076 Sum_probs=106.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc--------cccccccc-ccchhhHH----------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSEYA-KVPWFDSV---------- 456 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------~vpa~~~~-~i~~~~~i---------- 456 (798)
.+++.|+++. +.|+.++|+||+||||||||++|.+.......|. ++|..... .-.+.++|
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~ 709 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPER 709 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHH
Confidence 5689999999 8999999999999999999999965433222021 23321000 00011111
Q ss_pred ----hhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 003747 457 ----FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 520 (798)
Q Consensus 457 ----~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~ 520 (798)
+..-+..+.+.. .=.++|| +.+|+..+.+...+|+++||||||+++|+..+..+...++..+.
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-
Confidence 111122222211 1123565 55677777788999999999999999999888777766655443
Q ss_pred cCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 521 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 521 ~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.+.| +|++||+......+|+++.+.+|++...
T Consensus 789 ~~kT-vIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 789 RGKT-RVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred cCCE-EEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 4677 8999999999999999999999998754
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=5.2e-13 Score=141.20 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=55.4
Q ss_pred hhhhhhhHHHHHHHHHHH-hC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 468 QSLSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 468 ~~lstfs~~~~ri~~il~-~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
.....+|+++++...+.. ++ .+|+++||||||+|+|+.....+.. ++..+. .|.+ +|++||+.++..+||++
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~g~~-ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-KGSQ-FIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-CCCE-EEEEECCHHHHHhCCEE
Confidence 344567776665544443 32 6789999999999999988777765 555554 4776 99999999998888887
Q ss_pred cce
Q 003747 543 DFF 545 (798)
Q Consensus 543 ~~l 545 (798)
+.+
T Consensus 239 ~~~ 241 (251)
T cd03273 239 FRT 241 (251)
T ss_pred EEE
Confidence 655
No 386
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.42 E-value=3.9e-13 Score=137.70 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=53.3
Q ss_pred HhhhhhhhhHHHHHHHHHH-Hh----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cC-CcEEEEEecchhHHhh
Q 003747 466 LSQSLSTFSGHLKQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SG-SLLTIATTHHGELKTL 538 (798)
Q Consensus 466 i~~~lstfs~~~~ri~~il-~~----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g-~t~VIitTHd~el~~~ 538 (798)
......++|+++++...+. ++ +.+|+++|||||++|+|+.....+...+.+...+ .+ ++ ||++||+++...-
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~-iii~th~~~~i~~ 181 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQF-IFITPQDISGLAS 181 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEE-EEEECCccccccc
Confidence 3445667887776655544 33 5899999999999999997777776645444333 23 45 8999999887654
Q ss_pred hcccc
Q 003747 539 KYSND 543 (798)
Q Consensus 539 a~~~~ 543 (798)
.+++.
T Consensus 182 ~d~v~ 186 (198)
T cd03276 182 SDDVK 186 (198)
T ss_pred cccee
Confidence 44443
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.42 E-value=9.9e-13 Score=148.10 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=94.8
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh--ccccccccc-----ccc--------------cccc
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLHILS-----SEY--------------AKVP 451 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G~~vpa-----~~~--------------~~i~ 451 (798)
..+..+..|..|. ..|+-++|+|||||||||+|++|++...+ .+.++|.-. ... .++.
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle 164 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLE 164 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHH
Confidence 3456778888888 67778999999999999999999754322 122221100 000 0000
Q ss_pred hh----------------hHH-------------------hhhcCc-hhhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEE
Q 003747 452 WF----------------DSV-------------------FADIGD-EQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVL 494 (798)
Q Consensus 452 ~~----------------~~i-------------------~~~ig~-~~si~~~lstfs~~-~~ri~~il~~a~~psLLL 494 (798)
++ +.+ +..+|. ...+....-.||++ +.|++.+..+..+|+|||
T Consensus 165 ~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLL 244 (614)
T KOG0927|consen 165 YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244 (614)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEE
Confidence 00 000 111111 11112223346654 456666777899999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCC-cEEEEEecchhHHh-hhccccceeeeEE
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAESGS-LLTIATTHHGELKT-LKYSNDFFENACM 550 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~~g~-t~VIitTHd~el~~-~a~~~~~l~ng~v 550 (798)
|||||+|||+..... +-++|..... + +++++|+.++.. +|.+++.+.++..
T Consensus 245 LDEPtnhLDleA~~w----Lee~L~k~d~~~-lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 245 LDEPTNHLDLEAIVW----LEEYLAKYDRII-LVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred ecCCccCCCHHHHHH----HHHHHHhccCce-EEEEecchhhhhhHhhhhheecccce
Confidence 999999999933222 4456776665 6 899999999884 8888888776663
No 388
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.41 E-value=7.8e-13 Score=169.43 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=61.4
Q ss_pred hhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHHhhhccccceee---
Q 003747 473 FSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFEN--- 547 (798)
Q Consensus 473 fs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~~~a~~~~~l~n--- 547 (798)
+|| +.||++.+.+++.+|++||||||||+||+.....+.. .+..+. ..+.| +|++||.......||+++.+.+
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~-~L~~~~~~~~~T-vIiIaHRlsti~~aD~Ivvl~~~~~ 1436 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK-TIVDIKDKADKT-IITIAHRIASIKRSDKIVVFNNPDR 1436 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHHhccCCCE-EEEEechHHHHHhCCEEEEEeCCCC
Confidence 554 5667787788899999999999999999966555544 444444 35777 8999999999999999999998
Q ss_pred -eEEE
Q 003747 548 -ACME 551 (798)
Q Consensus 548 -g~v~ 551 (798)
|++.
T Consensus 1437 ~G~iv 1441 (1466)
T PTZ00265 1437 TGSFV 1441 (1466)
T ss_pred CCCEE
Confidence 8754
No 389
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5e-13 Score=146.31 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=92.4
Q ss_pred hhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHh-hhcCchh-----
Q 003747 392 ALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF-ADIGDEQ----- 464 (798)
Q Consensus 392 ~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~-~~ig~~~----- 464 (798)
..++.++....++|+ .-..-++|+||||.||||||+++.+- +-++.|-..-. ....+++|++.+ ..++.++
T Consensus 595 gy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk-l~P~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~Ey 672 (807)
T KOG0066|consen 595 GYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK-LDPNDGELRKN-HRLRIGWFDQHANEALNGEETPVEY 672 (807)
T ss_pred cCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcC-CCCCcchhhcc-ceeeeechhhhhHHhhccccCHHHH
Confidence 335566666666665 33344999999999999999998322 12222322222 345677777643 2222222
Q ss_pred ----------hHhhhhhhh--------------hHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 465 ----------SLSQSLSTF--------------SGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 465 ----------si~~~lstf--------------s~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
.....+.+| ||+. .|++.+-..+..|++|||||||++||.....+++.+| .
T Consensus 673 Lqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI----n 748 (807)
T KOG0066|consen 673 LQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI----N 748 (807)
T ss_pred HHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH----H
Confidence 222223333 3333 4555554557899999999999999997777766654 4
Q ss_pred hcCCcEEEEEecchhHHh-hhccccceeeeEE
Q 003747 520 ESGSLLTIATTHHGELKT-LKYSNDFFENACM 550 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v 550 (798)
++.+. ||++|||..+.. ..+....++|..|
T Consensus 749 ey~Gg-Vi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 749 EYNGG-VIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred hccCc-EEEEecccceeeecCceEEEEccCCh
Confidence 45555 899999977653 3344444544443
No 390
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=9.4e-13 Score=129.58 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=97.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-------cccccccc---cc-------cccccchhhHH--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-------AKSGLHIL---SS-------EYAKVPWFDSV-- 456 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-------aq~G~~vp---a~-------~~~~i~~~~~i-- 456 (798)
-+|..+++|+ ..|+++++-||+|+||||+||++-..... -+.|..+. +. ....++|+.++
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4689999999 99999999999999999999999432111 11111110 00 01123333332
Q ss_pred --------------------------------hhhcCchhhH-hhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 457 --------------------------------FADIGDEQSL-SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 457 --------------------------------~~~ig~~~si-~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.++++.+.+ ....+||||+.+ |+..+..++.+-++|||||||+.|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 3333333322 223478997655 444455678899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccc
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDF 544 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~ 544 (798)
|......... ++..-...|+. ++=+-||.+... .|++...
T Consensus 184 Da~Nr~vVve-li~e~Ka~GaA-lvGIFHDeevre~vadR~~~ 224 (235)
T COG4778 184 DATNRAVVVE-LIREAKARGAA-LVGIFHDEEVREAVADRLLD 224 (235)
T ss_pred cccchHHHHH-HHHHHHhcCce-EEEeeccHHHHHHHhhheee
Confidence 9977777654 66667788998 899999999875 6666543
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.38 E-value=1.1e-12 Score=132.18 Aligned_cols=131 Identities=19% Similarity=0.157 Sum_probs=77.6
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcccc----c--------ccccccccccch-hhHHhhhcCchhhHhhhhhhhhHHH
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAKSG----L--------HILSSEYAKVPW-FDSVFADIGDEQSLSQSLSTFSGHL 477 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq~G----~--------~vpa~~~~~i~~-~~~i~~~ig~~~si~~~lstfs~~~ 477 (798)
+.+|+||||+|||++|..|+......... . .-+....+.+.+ |+..+..+- ....... +|+++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~-~~~~~~~---LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL-QGKVEQI---LSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec-CCcCccc---CCHHH
Confidence 89999999999999999985432211000 0 000001111110 111111110 0011111 45555
Q ss_pred HHHHHHH-Hh----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceee
Q 003747 478 KQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 547 (798)
Q Consensus 478 ~ri~~il-~~----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~n 547 (798)
++...+. .+ +.+|+++|+|||++|+|+.....+.. ++..+...|.+ +|++||+.+....++++..+..
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~t-iIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQ-FIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEECCHHHHhhCCeEEEEEE
Confidence 4433333 32 37899999999999999977777665 55566666777 9999999988888887776654
No 392
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.1e-12 Score=142.78 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=110.4
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-----cccccc-cccchhhHHhhhc-------C--
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----ILSSEY-AKVPWFDSVFADI-------G-- 461 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-----vpa~~~-~~i~~~~~i~~~i-------g-- 461 (798)
+-...++++ ..|+++.|+|.|||||||+++.+.++..+...+.+ +.+... ..-..|..+|.+. |
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 334445555 57899999999999999999999655433322222 211000 0111233344332 1
Q ss_pred ---chhhHhhhhh-------------hhh------HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 462 ---DEQSLSQSLS-------------TFS------GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 462 ---~~~si~~~ls-------------tfs------~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
..+.+.+.+. .|| |+.+|++.+++.+.+++++++||-.+.-||.-.+.....++-.+.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK 496 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH
Confidence 1233333322 122 678899999999999999999999999999999999888999999
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
+.|+| |+++|||..-...+|+...+.||++..
T Consensus 497 ~qGKT-I~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 497 EQGKT-IFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HhCCe-EEEEecCchhhhhHHHHHHHhcCceee
Confidence 99998 999999988888899999999999864
No 393
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.9e-12 Score=167.37 Aligned_cols=152 Identities=11% Similarity=0.000 Sum_probs=101.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
.+|++|++|+ ++|+.++|+||+|||||||+++|.++.-.. .| .++|. +..-+ .+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~l~~LR~~IsiVpQ-dp~LF~GTI 1329 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFGLMDLRKVLGIIPQ-APVLFSGTV 1329 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCCHHHHHhccEEECC-CCccccccH
Confidence 4699999999 889999999999999999999996543221 11 12232 11000 00
Q ss_pred hhH--------------HhhhcCchhhHhh-----------hhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS--------------VFADIGDEQSLSQ-----------SLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~~-----------~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.++ .+...+..+.+.. +=+.+|++ .+++..+.+++.+|++|||||||+++|+..
T Consensus 1330 reNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1330 RFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred HHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 011 1112222222211 11246654 556676777899999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
-..+ ...++... .++| +|+++|..+....+|++..+.+|++...
T Consensus 1410 e~~I-q~~I~~~~-~~~T-vI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1410 DALI-QKTIREEF-KSCT-MLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred HHHH-HHHHHHHC-CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 4444 44444432 4687 9999999998888999999999998754
No 394
>PLN03232 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.7e-12 Score=167.23 Aligned_cols=152 Identities=11% Similarity=0.029 Sum_probs=101.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
.+|++|++++ ++|+.++|+||+|||||||+++|.++.-.. .| .++|. +..-+ .+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~-~G~I~IdG~di~~i~~~~lR~~i~iVpQ-dp~LF~gTI 1326 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE-KGRIMIDDCDVAKFGLTDLRRVLSIIPQ-SPVLFSGTV 1326 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CceEEECCEEhhhCCHHHHHhhcEEECC-CCeeeCccH
Confidence 5799999999 889999999999999999999996542211 11 12332 11000 00
Q ss_pred hhH--------------HhhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS--------------VFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.++ .+...+..+.+.. ++ +.+|+ +.|++..+.+++.+|++|||||||+++|+..
T Consensus 1327 r~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1327 RFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred HHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 011 1122222222211 11 24665 4556666677799999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
-..+ ...++... .++| +|+++|..+....+|++..+.+|++...
T Consensus 1407 e~~I-q~~L~~~~-~~~T-vI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1407 DSLI-QRTIREEF-KSCT-MLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred HHHH-HHHHHHHc-CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 4444 44444332 4677 9999999998888999999999999753
No 395
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.37 E-value=2.6e-12 Score=165.39 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=102.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKVP-- 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i~-- 451 (798)
...|++|++|+ ++|+.++|+|++|||||||+++|.++.- ..|. ++|. +..-+.
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQ-dp~LF~GT 1307 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQ-KVFIFSGT 1307 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeC-CCccCccC
Confidence 46799999999 8899999999999999999999976532 2232 2222 100000
Q ss_pred hhhH--------------HhhhcCchhhHhh---hh--------hhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFDS--------------VFADIGDEQSLSQ---SL--------STFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~~--------------i~~~ig~~~si~~---~l--------stfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.++ .+...+..+.+.. ++ ..||++ .+++..+.+++.+|++|||||||+++|+.
T Consensus 1308 IR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~ 1387 (1490)
T TIGR01271 1308 FRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387 (1490)
T ss_pred HHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHH
Confidence 0011 1222233222221 11 246654 55666677789999999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
.-..+. ..+... -.++| ||++||..+....+|++..+.+|++..
T Consensus 1388 Te~~I~-~~L~~~-~~~~T-vI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1388 TLQIIR-KTLKQS-FSNCT-VILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred HHHHHH-HHHHHH-cCCCE-EEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 545544 344433 23677 999999999888899999999999864
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=4.4e-13 Score=132.40 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhh--------------------------hhcccc-------------cc
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--------------------------MMAKSG-------------LH 441 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~--------------------------~~aq~G-------------~~ 441 (798)
.++.. ..|+++-++||||+||||||-.++++. |++|.- ++
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 34444 578999999999999999999886542 111110 11
Q ss_pred cccccccccchhhHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHh-------CCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 442 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQ-------STSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 442 vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~-------a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
.|+ ...-...+.+...++..|.+-..++.+||+. +|+..+... -....|||+|||.++||.....++ ..
T Consensus 97 qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-dr 173 (248)
T COG4138 97 QPD--KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DR 173 (248)
T ss_pred Cch--HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HH
Confidence 111 1111223445556677777778888888654 333322211 124479999999999999666555 67
Q ss_pred HHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 514 LLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 514 ll~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
++..+...|.+ ||+++||.+.. +-+++...+..|.+...+
T Consensus 174 ll~~~c~~G~~-vims~HDLNhTLrhA~~~wLL~rG~l~~~G 214 (248)
T COG4138 174 LLSALCQQGLA-IVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214 (248)
T ss_pred HHHHHHhCCcE-EEEeccchhhHHHHHHHHHHHhcCeEEeec
Confidence 99999999998 99999998765 578888888888887654
No 397
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.1e-12 Score=152.46 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=103.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc------cccc----ccccch-----------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------LSSE----YAKVPW----------- 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v------pa~~----~~~i~~----------- 452 (798)
++..|++|++|+ ++|++++|+|||||||||+..+|- -.|.+..|... ..-+ ...+++
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeeccc
Confidence 355799999999 999999999999999999999882 23333333211 1000 001111
Q ss_pred -hhHHhhhc---------------CchhhHhh---hh--------hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 453 -FDSVFADI---------------GDEQSLSQ---SL--------STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 453 -~~~i~~~i---------------g~~~si~~---~l--------stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.++|..-. +..+.+.. +. +.+| |+.+|++.+.+++.+|.+|||||-||+||.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 11221000 00011100 00 1344 456778888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+...+....++.+.+ +.| ||++.|.+.-.+-|+.++.+.+|++...+
T Consensus 638 -eSE~lVq~aL~~~~~-~rT-VlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 638 -ESEYLVQEALDRLMQ-GRT-VLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred -hhHHHHHHHHHHhhc-CCe-EEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 555555555555544 467 89999999999999999999999998654
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.36 E-value=2.4e-12 Score=140.77 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=104.4
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccc---------------c---------cccccc--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------------L---------SSEYAK-- 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~v---------------p---------a~~~~~-- 449 (798)
..+.++++|+ ..|+.++|+|.+|||||||=.+|..+.. .+ |... | .+..+.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 3467888998 8889999999999999998776632210 00 1110 0 000000
Q ss_pred --cchh-----------------------hHHhhhcCch-hhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 450 --VPWF-----------------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 450 --i~~~-----------------------~~i~~~ig~~-~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.+- -..+...|.. .........|||++ +|++.+.+++.+|.+++||||||+|
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
Confidence 0000 0012223322 23344556788654 6777777889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhccccceeeeEEEEecc
Q 003747 503 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDEV 555 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~fd~~ 555 (798)
|-.-...+ ..+++.|.+ +|.+ -+|+|||+.+.. +|+++..+.+|++...+.
T Consensus 458 D~SVQaQv-v~LLr~LQ~k~~Ls-YLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 458 DRSVQAQV-LDLLRDLQQKHGLS-YLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred hHHHHHHH-HHHHHHHHHHhCCe-EEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 98655555 457777765 4777 899999998874 999999999999987664
No 399
>PTZ00243 ABC transporter; Provisional
Probab=99.35 E-value=3.5e-12 Score=164.62 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=99.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
..|++|++|+ ++|+.++|+|++|||||||+++|.++.-.. .| .++|. +..-+ .+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~l~~LR~~I~iVpQ-dp~LF~gTI 1400 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYGLRELRRQFSMIPQ-DPVLFDGTV 1400 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCCHHHHHhcceEECC-CCccccccH
Confidence 4599999999 889999999999999999999996543211 11 12332 11000 01
Q ss_pred hhH--------------HhhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCC-CeEEEEecCCCCCChH
Q 003747 453 FDS--------------VFADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTS-QSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~-psLLLLDEP~sGlDp~ 505 (798)
.++ .+...+..+.+.. +=+.+|+++ +++..+.+++.+ |++|||||||+++|+.
T Consensus 1401 reNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1401 RQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 111 1122233222211 113467655 455555666774 8999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.-..+ ...+... -.++| ||+++|..+....+|++..+.+|++...
T Consensus 1481 te~~I-q~~L~~~-~~~~T-vI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1481 LDRQI-QATVMSA-FSAYT-VITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHH-HHHHHHH-CCCCE-EEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 55554 4444433 23677 9999999999999999999999998753
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.34 E-value=1.7e-12 Score=123.65 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=63.0
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccc--cccc----
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVP---- 451 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~--~~i~---- 451 (798)
++++++. ..|++++|+|||||||||||++|++...... |. ++|.... ....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~-G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS-GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE-EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 3577887 7889999999999999999999976543321 21 1111000 0000
Q ss_pred ----hhhHHhhhcCchhhHhhhh----hhhhHHH-HHHHHHHHhCCCCeEEEEecCCC
Q 003747 452 ----WFDSVFADIGDEQSLSQSL----STFSGHL-KQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 452 ----~~~~i~~~ig~~~si~~~l----stfs~~~-~ri~~il~~a~~psLLLLDEP~s 500 (798)
.+..++..++..+.....+ ..+|+++ +++..+.+++.+|+++||||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1122334444443333334 7777655 56666677899999999999986
No 401
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.33 E-value=4.9e-12 Score=163.36 Aligned_cols=152 Identities=11% Similarity=-0.039 Sum_probs=100.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--ch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~~ 452 (798)
..|++|++++ ++|+.++|+||+|||||||+++|.++.-.. .| .++|. +..-+ .+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~-~G~I~IdG~dI~~i~~~~LR~~i~iVpQ-dp~LF~gTI 1376 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDGLNIAKIGLHDLRFKITIIPQ-DPVLFSGSL 1376 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC-CCeEEECCEEccccCHHHHHhcCeEECC-CCcccCccH
Confidence 4699999999 889999999999999999999995442211 11 12332 11000 00
Q ss_pred hhH--------------HhhhcCchhhHhh-----------hhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 453 FDS--------------VFADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 453 ~~~--------------i~~~ig~~~si~~-----------~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
.++ .+...+..+.+.. +=..+|+ +.+++..+.+++.+|++|||||||+++|+..
T Consensus 1377 r~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1377 RMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred HHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 011 1111222222211 1134665 5566677777899999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
-..+ ...++.. -.++| ||+++|..+....+|++..+.+|++...
T Consensus 1457 e~~I-q~~l~~~-~~~~T-vI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1457 DNLI-QSTIRTQ-FEDCT-VLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred HHHH-HHHHHHH-cCCCE-EEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 4444 4444433 24677 9999999999989999999999998754
No 402
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.33 E-value=7.8e-12 Score=136.85 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=104.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-c---cccc-------------------------ccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-------------------------HILSS 445 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-a---q~G~-------------------------~vpa~ 445 (798)
...+.++++|+ ..|+.++|+|.+|||||.+...|..+..- + -.|. .+...
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 35688999999 88999999999999999988877432110 0 0000 00000
Q ss_pred cccccchh----hH----------------------HhhhcCch---hhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEE
Q 003747 446 EYAKVPWF----DS----------------------VFADIGDE---QSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLL 495 (798)
Q Consensus 446 ~~~~i~~~----~~----------------------i~~~ig~~---~si~~~lstfs~-~~~ri~~il~~a~~psLLLL 495 (798)
....+... .+ ++...|+. ..+......+|| +.+|+..+++++++|+|||-
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 01111000 11 12222322 223333445665 55778888899999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhccccceeeeEEEE
Q 003747 496 DEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEF 552 (798)
Q Consensus 496 DEP~sGlDp~eg~al~~all~~L~-~~g~t~VIitTHd~el~~-~a~~~~~l~ng~v~f 552 (798)
||||++||..-...+.. +++.|. +.|.. ++++|||+.+.. ++|++..+..|.+..
T Consensus 182 DEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa-~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 182 DEPTTALDVTVQAQILD-LLKELQAELGMA-ILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cCCcchhhhhhHHHHHH-HHHHHHHHhCcE-EEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 99999999977777655 666665 45887 999999998884 999999999999864
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.32 E-value=6.6e-12 Score=139.01 Aligned_cols=132 Identities=22% Similarity=0.255 Sum_probs=98.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhcchhhhhcccccc-----------------------------------------ccc
Q 003747 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----------------------------------------ILS 444 (798)
Q Consensus 406 ~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-----------------------------------------vpa 444 (798)
-..|++++|+||||-||||.||+|++...+.- |-+ +|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL-G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL-GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC-CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 36899999999999999999999975432211 110 110
Q ss_pred cc----------ccccchhhHHhhhcCchhhHhhhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHH
Q 003747 445 SE----------YAKVPWFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 513 (798)
Q Consensus 445 ~~----------~~~i~~~~~i~~~ig~~~si~~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~a 513 (798)
.- ...-+.++.+...+++...+...++.+|| ++|+++.+++++.+.++.++|||++-||..+....+.
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar- 254 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR- 254 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH-
Confidence 00 00112345556677778888888888885 6788888888999999999999999999999988876
Q ss_pred HHHHHHhcCCcEEEEEecchhHHhhhc
Q 003747 514 LLEAFAESGSLLTIATTHHGELKTLKY 540 (798)
Q Consensus 514 ll~~L~~~g~t~VIitTHd~el~~~a~ 540 (798)
+++.|.+.+.+ ||++.||+.+..|-.
T Consensus 255 ~Irel~~~~k~-ViVVEHDLavLD~ls 280 (591)
T COG1245 255 VIRELAEDGKY-VIVVEHDLAVLDYLS 280 (591)
T ss_pred HHHHHhccCCe-EEEEechHHHHHHhh
Confidence 55667766887 999999998876433
No 404
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.30 E-value=4.7e-12 Score=131.23 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=50.0
Q ss_pred hhhhhhHHHHHHHHHHHh-----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-C-CcEEEEEecch-hHHhhhc
Q 003747 469 SLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-G-SLLTIATTHHG-ELKTLKY 540 (798)
Q Consensus 469 ~lstfs~~~~ri~~il~~-----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g-~t~VIitTHd~-el~~~a~ 540 (798)
...++|++++++..+..+ +.+|+++|+|||++|+|+.....+.. ++..+... | .+ +|++||+. +...+++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~-~l~~~~~~~g~~~-viiith~~~~~~~~~~ 200 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFD-MLVETACKEGTSQ-YFLITPKLLPGLNYHE 200 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHH-HHHHHhhcCCCce-EEEEchhhccCCcccC
Confidence 445788888776554422 58999999999999999977777755 55555554 5 45 78888885 4445554
Q ss_pred c
Q 003747 541 S 541 (798)
Q Consensus 541 ~ 541 (798)
+
T Consensus 201 ~ 201 (213)
T cd03277 201 K 201 (213)
T ss_pred c
Confidence 3
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=9.1e-12 Score=152.30 Aligned_cols=87 Identities=20% Similarity=0.146 Sum_probs=67.6
Q ss_pred HhhhhhhhhHHHHH-HHHHHHhCC---CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 466 LSQSLSTFSGHLKQ-IGNIISQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 466 i~~~lstfs~~~~r-i~~il~~a~---~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
+.+...++|+++++ +..+..++. +|+|+||||||+|||+.+...+.. ++..+.+.|.| ||++||+.++...+++
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~T-VIvi~H~~~~i~~aD~ 899 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNT-VVVIEHNLDVIKTADY 899 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCE
Confidence 45556778876654 444444454 589999999999999988887765 66667777888 9999999998888998
Q ss_pred ccce------eeeEEEEec
Q 003747 542 NDFF------ENACMEFDE 554 (798)
Q Consensus 542 ~~~l------~ng~v~fd~ 554 (798)
++.+ .+|++.+.+
T Consensus 900 ii~Lgp~~G~~gG~iv~~G 918 (924)
T TIGR00630 900 IIDLGPEGGDGGGTIVASG 918 (924)
T ss_pred EEEecCCccCCCCEEEEeC
Confidence 8888 688887754
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.30 E-value=7.6e-12 Score=138.53 Aligned_cols=142 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------ccccccc----cc---------------ccchhhHHhhhcC
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------LHILSSE----YA---------------KVPWFDSVFADIG 461 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------~~vpa~~----~~---------------~i~~~~~i~~~ig 461 (798)
..|++++++||||-|||||.|+|++..-+...+ ++-|..- .. .-.+...++.-++
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 357999999999999999999998765433211 1222100 00 0012234555677
Q ss_pred chhhHhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003747 462 DEQSLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 540 (798)
Q Consensus 462 ~~~si~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~ 540 (798)
++.-+++.+..+| |++||++.++++..+++|.|||||.+-||.++....+..|.+.....+.| .+++-||..+..|
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kt-a~vVdHDi~~~dy-- 521 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT-ALVVDHDIYMIDY-- 521 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCce-EEEEecceehhhh--
Confidence 7888888888888 47888999999999999999999999999988888877666666666777 8999999888654
Q ss_pred cccceeeeEEEEecc
Q 003747 541 SNDFFENACMEFDEV 555 (798)
Q Consensus 541 ~~~~l~ng~v~fd~~ 555 (798)
+.+.-|.|.++
T Consensus 522 ----vsDr~ivF~Ge 532 (591)
T COG1245 522 ----VSDRLIVFEGE 532 (591)
T ss_pred ----hhceEEEEecC
Confidence 34445556543
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.25 E-value=2.6e-11 Score=154.78 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=69.7
Q ss_pred cCchhh-HhhhhhhhhHHHHHHHHHH-HhC---CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 460 IGDEQS-LSQSLSTFSGHLKQIGNII-SQS---TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 460 ig~~~s-i~~~lstfs~~~~ri~~il-~~a---~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
+|.... ..+...++|+++++...+. +++ .+|+++||||||+|||+.+...+.. ++..+.+.|.| ||++||+++
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~T-VIiIsHdl~ 873 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHT-VVIIEHNMH 873 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCE-EEEEeCCHH
Confidence 444432 4556667887766555554 443 6999999999999999988877755 66778888988 999999999
Q ss_pred HHhhhcccccee------eeEEEEec
Q 003747 535 LKTLKYSNDFFE------NACMEFDE 554 (798)
Q Consensus 535 l~~~a~~~~~l~------ng~v~fd~ 554 (798)
+..+++++..+. +|.+.+++
T Consensus 874 ~i~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 874 VVKVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HHHhCCEEEEEccCCCCCCCEEEEeC
Confidence 888899888884 57776543
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.24 E-value=3.1e-11 Score=147.94 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=68.5
Q ss_pred HhhhhhhhhHHH-HHHHHHHHhCCCC---eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 466 LSQSLSTFSGHL-KQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 466 i~~~lstfs~~~-~ri~~il~~a~~p---sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
+.+...++|+++ +++..+..++.+| +++||||||+|||+.+...+.. ++..+.+.|.| ||++||+.++...+++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~T-VIiitH~~~~i~~aD~ 901 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNT-VVVIEHNLDVIKTADW 901 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCHHHHHhCCE
Confidence 344556778665 4555555667777 9999999999999988888765 66677777888 9999999998888998
Q ss_pred ccce------eeeEEEEec
Q 003747 542 NDFF------ENACMEFDE 554 (798)
Q Consensus 542 ~~~l------~ng~v~fd~ 554 (798)
+..+ .+|.+.+.+
T Consensus 902 ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 902 IIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred EEEecCCcCCCCCEEEEeC
Confidence 8888 588887754
No 409
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.21 E-value=4.3e-11 Score=133.08 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=102.8
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh--------hhh-------------ccccccccccccccc-
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA--------VMM-------------AKSGLHILSSEYAKV- 450 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll--------~~~-------------aq~G~~vpa~~~~~i- 450 (798)
+++++|+.|+++. ..|+.++++||+|+||||++|++-.+ .+. .++| .+|. +..-+
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQ-DtvLFN 625 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQ-DTVLFN 625 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccC-cceeec
Confidence 5678999999999 88999999999999999999998321 111 1122 2343 11100
Q ss_pred -chh------------hHHhhh---cCchhhHh------------hhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 451 -PWF------------DSVFAD---IGDEQSLS------------QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 451 -~~~------------~~i~~~---ig~~~si~------------~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
.++ +.+++. -++.+.+. .++.--.|+.+|++.+...+..|.++||||-||+|
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 000 111110 01111221 12221225667787777889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
|...-.++ .+.+..+.... | .|++.|...-.--||.+..+.||++...+
T Consensus 706 DT~tER~I-QaaL~rlca~R-T-tIVvAHRLSTivnAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 706 DTNTERAI-QAALARLCANR-T-TIVVAHRLSTIVNADLILVISNGRIVERG 754 (790)
T ss_pred CCccHHHH-HHHHHHHhcCC-c-eEEEeeeehheecccEEEEEeCCeEeecC
Confidence 99776666 55666666544 4 57778987777778889999999997644
No 410
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.18 E-value=5.7e-11 Score=137.87 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------cccccccccccc-------------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEYAKVP------------- 451 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------~~vpa~~~~~i~------------- 451 (798)
++.+...++++. +.|+-+.|+||||||||||+|+|+++-...... +|+|.......+
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 345677777777 777889999999999999999998764332211 233321110000
Q ss_pred -h----hhHHhhhcCchhhHhh--hh----hhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 452 -W----FDSVFADIGDEQSLSQ--SL----STFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 452 -~----~~~i~~~ig~~~si~~--~l----stfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
+ ..+++...|..+-... .. ..+| |++++++.+..+.++|++++|||-|+++|+.....+...+.+.|
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-
Confidence 0 0112233333222211 00 1223 67888888888899999999999999999966555544332222
Q ss_pred hcCCcEEEEEecchhHHhhhccc
Q 003747 520 ESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~ 542 (798)
.++| ||.|.|-..+..+..+.
T Consensus 563 -p~~t-vISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 563 -PDAT-VISVGHRPTLWNFHSRQ 583 (604)
T ss_pred -CCCE-EEEeccchhhHHHHhhh
Confidence 4677 99999998887766553
No 411
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.4e-11 Score=134.34 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=90.1
Q ss_pred EEEEecCCCCchhhhhhcchhhhhcccccccccccccccchh------------------------------hHHhhhcC
Q 003747 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF------------------------------DSVFADIG 461 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~------------------------------~~i~~~ig 461 (798)
++++|+||.||||+||++.+ ..-+..|...-. ...++.+| ..-+.++|
T Consensus 393 i~~vg~ng~gkst~lKi~~~-~l~~~rgi~~~~-~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~G 470 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKG-DLTPTRGIVGRH-PRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFG 470 (582)
T ss_pred hheeccCchhHHHHHHHHhc-cCCcccceeeec-ccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcC
Confidence 88999999999999999832 111111211100 11122222 12244556
Q ss_pred chhhH-hhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h
Q 003747 462 DEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L 538 (798)
Q Consensus 462 ~~~si-~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~ 538 (798)
+...+ .+.+.++||++ .+++.+.....+|.||+|||||+.||.....+++ +.|...++. ||+||||.++.. .
T Consensus 471 l~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GG-Vv~VSHd~~fi~~~ 545 (582)
T KOG0062|consen 471 LSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALA----KALKNFNGG-VVLVSHDEEFISSL 545 (582)
T ss_pred CCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHH----HHHHhcCCc-EEEEECcHHHHhhc
Confidence 54333 34456778655 5778787889999999999999999985555544 466677666 899999999985 8
Q ss_pred hccccceeeeEEE
Q 003747 539 KYSNDFFENACME 551 (798)
Q Consensus 539 a~~~~~l~ng~v~ 551 (798)
|.....+.+|.|.
T Consensus 546 c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 546 CKELWVVEDGKVT 558 (582)
T ss_pred CceeEEEcCCcEE
Confidence 8888899999885
No 412
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1.2e-10 Score=142.67 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc---------------------ccccccc--c
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------------------ILSSEYA--K 449 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~---------------------vpa~~~~--~ 449 (798)
.++.+|++|++|+ +.|+.++|+||+||||||.+-+|-.. |-+..|.. |.. +.. .
T Consensus 1000 RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ-EP~LF~ 1077 (1228)
T KOG0055|consen 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF-YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ-EPVLFN 1077 (1228)
T ss_pred CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-cCCCCCeEEECCcccccCCHHHHHHhcceecc-Cchhhc
Confidence 3456799999999 89999999999999999998887211 11111211 110 000 0
Q ss_pred cchhhHHhhh-cC-chhhHh----------------hhhh--------hhh-HHHHHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 450 VPWFDSVFAD-IG-DEQSLS----------------QSLS--------TFS-GHLKQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 450 i~~~~~i~~~-ig-~~~si~----------------~~ls--------tfs-~~~~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
-.+.++|..- -. .++.+. +++. .+| |+.||++.+.+.+.+|++|||||-||+|
T Consensus 1078 ~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 0111222111 00 011111 1111 244 4567788888889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
|. +...+....++... .|.| +|+++|.+...+-||.+..+.||.|...+
T Consensus 1158 Ds-eSErvVQeALd~a~-~gRT-~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1158 DS-ESERVVQEALDRAM-EGRT-TIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred hh-hhHHHHHHHHHHhh-cCCc-EEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 98 55666666666644 4677 79999999999999999999999998755
No 413
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.14 E-value=2.4e-10 Score=115.79 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=98.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------------cc--cccccc------ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------SG--LHILSS------EYA 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------------~G--~~vpa~------~~~ 448 (798)
..++..||+++ +.|.-..++|.||+|||||||++++-..... +| +|.-.. -..
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 35788899998 7777799999999999999999965321110 00 000000 000
Q ss_pred ------ccchhhHHhhhcCch----hh--------Hhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Q 003747 449 ------KVPWFDSVFADIGDE----QS--------LSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 449 ------~i~~~~~i~~~ig~~----~s--------i~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a 509 (798)
.++...-|+.-=|+. +. +...+...| |+.+|+...+.++.+=.+|||||.|-.||......
T Consensus 106 evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARad 185 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185 (291)
T ss_pred cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHH
Confidence 111111111111110 00 111122334 44555555566677779999999999999988888
Q ss_pred HHHHHHHHHHhcCCcEEEEEecc-hhHHhhhccccceeeeEEEE
Q 003747 510 LGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd-~el~~~a~~~~~l~ng~v~f 552 (798)
+...+.+....+|+| |+.+||- -.+...+.....+.+|.+.-
T Consensus 186 LLeFlkeEce~Rgat-IVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 186 LLEFLKEECEQRGAT-IVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHhhcCcE-EEEEeeeccchhhcchhEEEecCCeeee
Confidence 887666666778998 9999995 55667888888888888863
No 414
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=2.8e-11 Score=148.05 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=92.6
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc-------ccccccccccc-cccc----------------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEY-AKVP---------------- 451 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-------q~G~~vpa~~~-~~i~---------------- 451 (798)
+.+++|++=- .+|.+++|+|+|||||||||++|++-.-+. -.|.+.+.... ...+
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence 3456666533 678899999999999999999996532111 12322221000 0111
Q ss_pred ---------------------hhhHHhhhcCchhhHhhhh----hhhhHHHH-HHHHHHHhCCCC-eEEEEecCCCCCCh
Q 003747 452 ---------------------WFDSVFADIGDEQSLSQSL----STFSGHLK-QIGNIISQSTSQ-SLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ---------------------~~~~i~~~ig~~~si~~~l----stfs~~~~-ri~~il~~a~~p-sLLLLDEP~sGlDp 504 (798)
++++++..++..+--+.-+ +.+|.+++ |+.....++.+| +||+|||||||||.
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDs 963 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDS 963 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccH
Confidence 2223333333322111111 12344433 333333557788 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccee-eeEEEEe
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFE-NACMEFD 553 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~e--l~~~a~~~~~l~-ng~v~fd 553 (798)
..+.. ...+++.+++.|.| |++|-|.+. +.+.-|+...+. +|++++-
T Consensus 964 qaA~~-i~~~lrkla~tGqt-IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 964 QAAAI-VMRFLRKLADTGQT-ILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHHH-HHHHHHHHHhcCCe-EEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 55554 45688899999998 999999854 445556665554 4666654
No 415
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.10 E-value=6.8e-10 Score=110.76 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEEEe
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 553 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd 553 (798)
++.+|++.+.++.-+|+++|.||..++||..-...+....++.-.+.|.+ .|.++.+..+ +.++|.+..+..|.|...
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiS-yiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS-YIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCce-EEEEechhhHhhhhcccEEEEecCceeec
Confidence 56678888888899999999999999999988888877666654566888 6777776554 569999999999998765
Q ss_pred cc
Q 003747 554 EV 555 (798)
Q Consensus 554 ~~ 555 (798)
+.
T Consensus 232 G~ 233 (267)
T COG4167 232 GS 233 (267)
T ss_pred CC
Confidence 53
No 416
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.08 E-value=5.3e-10 Score=122.85 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=98.2
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh-------ccccc----------ccccccccc---cchhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-------AKSGL----------HILSSEYAK---VPWFD 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~-------aq~G~----------~vpa~~~~~---i~~~~ 454 (798)
..++..|++|. +.|++++|+|++|+||||+|++|.+...- +..|. .+|...... ..+.+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 35789999999 88999999999999999999999654321 12221 123211111 22344
Q ss_pred HHhhhcCc-------------hhhHh--hhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Q 003747 455 SVFADIGD-------------EQSLS--QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518 (798)
Q Consensus 455 ~i~~~ig~-------------~~si~--~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L 518 (798)
++....|+ .+.+. ..++.+|.+ ..+...+...+..|++++.||..+-||+.....++..+-+.-
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 55544444 22111 122344433 445555556688999999999999999999999999888877
Q ss_pred HhcCCcEEEEEecchhHHh
Q 003747 519 AESGSLLTIATTHHGELKT 537 (798)
Q Consensus 519 ~~~g~t~VIitTHd~el~~ 537 (798)
++.|.| ++++||..++..
T Consensus 555 Re~giT-livvThrpEv~~ 572 (593)
T COG2401 555 REAGIT-LIVVTHRPEVGN 572 (593)
T ss_pred HHhCCe-EEEEecCHHHHh
Confidence 788998 899999999975
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=7.9e-10 Score=118.88 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=54.0
Q ss_pred hhHHHHH-HHHHHHh--C--CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceee
Q 003747 473 FSGHLKQ-IGNIISQ--S--TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 547 (798)
Q Consensus 473 fs~~~~r-i~~il~~--a--~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~n 547 (798)
+|+++++ +..++.. + .+|+++|||||++|+|+.....+.. ++..+.. +.+ +|++||+..+..++++...+.+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~~~-~~t-ii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK-KLKELSR-SHQ-VLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCE-EEEEechHHHHHhcCcEEEEEE
Confidence 5655554 3333322 2 2999999999999999977777765 4444543 676 9999999998888988877776
Q ss_pred eE
Q 003747 548 AC 549 (798)
Q Consensus 548 g~ 549 (798)
+.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 53
No 418
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.03 E-value=7.9e-10 Score=125.85 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=96.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------cccccccccccccch-hhH------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------SGLHILSSEYAKVPW-FDS------ 455 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------~G~~vpa~~~~~i~~-~~~------ 455 (798)
+..+..++++. ..|.-+.|+||||+|||.|||.+|++....+ .-+|+|.+.....+- -+|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 45566679998 7888899999999999999999987643211 123445422211110 011
Q ss_pred -------------------------HhhhcCchh--hHhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 456 -------------------------VFADIGDEQ--SLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 456 -------------------------i~~~ig~~~--si~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+..+.|-.+ ........+| |+++|++.+....++|.+-+|||-|+++|..-
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dv- 605 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDV- 605 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHH-
Confidence 112222111 2223334555 67888888888899999999999999999732
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
..++-+.+.+.|.| .|-++|...+..+-+....+
T Consensus 606 ---E~~~Yr~~r~~giT-~iSVgHRkSL~kfHd~~L~~ 639 (659)
T KOG0060|consen 606 ---EGALYRKCREMGIT-FISVGHRKSLWKFHDYVLRM 639 (659)
T ss_pred ---HHHHHHHHHHcCCe-EEEeccHHHHHhhhhEEEEe
Confidence 23344566778998 89999999988766555444
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7e-10 Score=122.09 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred hhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceeeeE
Q 003747 472 TFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENAC 549 (798)
Q Consensus 472 tfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ng~ 549 (798)
.|||+. .|+..+.++...|.||+|||||+.||... ++| +-.+|.....| ++++|||..+.. .|..++.+.+..
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA---VIW-LdNYLQgWkKT-LLIVSHDQgFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA---VIW-LDNYLQGWKKT-LLIVSHDQGFLDSVCTDIIHLDNQK 486 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccce---eee-hhhHHhhhhhe-eEEEecccchHHHHHHHHhhhhhhh
Confidence 466554 35666667788999999999999999733 322 55566666777 899999988874 777776664433
No 420
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.1e-09 Score=118.76 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=102.3
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccccc
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKVP 451 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i~ 451 (798)
.+.+++++++++. +.|+.++|+||+|+||||+++.+-. -+-.++|. .+|. +.. -
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR-FyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ-Dtv--L 348 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR-FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ-DTV--L 348 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH-HhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc-cce--e
Confidence 5678899999999 8899999999999999999999832 12222221 2232 100 0
Q ss_pred hhhHHhhhc-------Cc------------hhhHhh---hhh--------hhh-HHHHHHHHHHHhCCCCeEEEEecCCC
Q 003747 452 WFDSVFADI-------GD------------EQSLSQ---SLS--------TFS-GHLKQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 452 ~~~~i~~~i-------g~------------~~si~~---~ls--------tfs-~~~~ri~~il~~a~~psLLLLDEP~s 500 (798)
+.|-++..+ +. .+-+.. ++. .+| |+.+|++.+...+.+|++++|||-||
T Consensus 349 FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 349 FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 111111111 00 001110 111 122 56778888888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 501 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+||...-.++- +-++.+. .|.| .+++.|.+.-..-||.+..+.||.+...+
T Consensus 429 aldt~te~~iq-~~l~~~~-~~rt-tlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 429 ALDTHTEQAIQ-AALREVS-AGRT-TLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred HhhhhHHHHHH-HHHHHHh-CCCe-EEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99996666664 4455444 5666 68888988887789999999999998655
No 421
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=98.96 E-value=5.4e-09 Score=105.89 Aligned_cols=186 Identities=14% Similarity=0.199 Sum_probs=126.3
Q ss_pred HHHhhcCHH----------HHHHHHHhhcCCHHHHHHHhc--cCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCC
Q 003747 52 ESLRVLEWD----------KLCHSVSSFARTSLGREATLT--QLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLT 117 (798)
Q Consensus 52 ~~l~~Le~~----------~i~~~l~~~~~s~~g~~~~~~--l~~~~~~~~~~~~~~l~et~e~~~--~~~~~~~~~~~~ 117 (798)
.|++.||+- .+...|.. |.|++|++.++. +.| ..|.+.++.+++.+.++.. -+.. .....+.
T Consensus 2 ~Tl~~L~i~~~~~~~~~~~sL~~~ln~-t~T~~Gkr~L~~~l~~P--~~d~~~I~~R~~~v~~~~~n~~~~~-~~~~~l~ 77 (204)
T PF05192_consen 2 NTLKSLEIFENSRSGKKKGSLFSLLNR-TSTPMGKRLLRSWLLQP--LTDIEEIEKRQDAVEEFLQNEELRE-ELRSILK 77 (204)
T ss_dssp HHHHHTTSSSBTTTSSSSTSHHHHH----SSHHHHHHHHHHHHS---BS-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHT
T ss_pred hhHHhccCCCCCCCCCCCCcHHHHHhc-CCChHHHHHHHHHHhCc--cchHHHHHHHHHHHHHHHHhhhHhh-hhhhhhh
Confidence 466666666 68999955 999999999998 544 4789999999999999996 1111 1123466
Q ss_pred CCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHhhccchHHHHHHHHHHHHhhhccc
Q 003747 118 GVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE---DADLYIRFMPLTQMLYQLMDMLIRNENNE 194 (798)
Q Consensus 118 ~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~~~---~~~~~~~l~~~~~li~~~l~~~~~~~~~~ 194 (798)
++. |+...+.++..|.. ++.++..+..++..+..+++.+...+.. ...+...+.++.. +.+.++..+....
T Consensus 78 ~~~--di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~i~~~~~~~~~~~~~L~~l~~~l~~~~~-l~~~i~~~id~~~-- 151 (204)
T PF05192_consen 78 KIP--DIERILKRLRSGRA-SPQDLLKLYKTLRSIIEIKKLLSERLESSPLLRKLLSSLPDFSE-LLDEIESTIDEDK-- 151 (204)
T ss_dssp TC---SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHCSHHH-HHHHHHHHBHTS---
T ss_pred ccc--hHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccHHH-HHHHHHHHHhcCc--
Confidence 776 48888998887644 8999999999999999998774432221 2344444444333 3344444443210
Q ss_pred cceeeeeeECCEEEEEecCCccCCCcEEEeeecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 003747 195 SLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIE 274 (798)
Q Consensus 195 ~~~~~vt~r~gR~vipVk~~~~~~~Giv~~~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~ 274 (798)
....++++ +|.. +..++.+|+.+|+..+..+.+.|.
T Consensus 152 ----~~~~~~~~--------------~I~~--------------------------~~~~~~~i~~~L~~~i~~~~~~l~ 187 (204)
T PF05192_consen 152 ----SLAIREQD--------------IIRD--------------------------INDEEQRILRELTNEIRKYSPELR 187 (204)
T ss_dssp ----CCHCTTSS--------------SBST--------------------------HHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred ----HHHHhccc--------------HHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 0000 888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003747 275 KMLNGIIQLDVVNARAT 291 (798)
Q Consensus 275 ~~~~~l~~LD~~~a~A~ 291 (798)
.+++++++||+++|+|+
T Consensus 188 ~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 188 ELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999986
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=2.1e-09 Score=134.48 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=106.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc--ccccccc---ccc------cc------h
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--LHILSSE---YAK------VP------W 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G--~~vpa~~---~~~------i~------~ 452 (798)
..+.++|+++. +.|+.++|+||-|||||+||..|.|-..... .| .|+|+.. +.. ++ .
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEER 612 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHH
Confidence 34589999999 8999999999999999999999843221111 11 1233200 000 00 0
Q ss_pred hhHHhhhcCchhhHh------------hhhhhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 453 FDSVFADIGDEQSLS------------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 453 ~~~i~~~ig~~~si~------------~~lstfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
++++...-....+++ ++. ++|| +.+|+..+.+.-++.+++|||-|+|++|..-+..+...++..+.
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L 691 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL 691 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh
Confidence 111111111111111 122 3555 45677777778899999999999999999999999998885544
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
++.| +|++||..++...+|.++.+.||++...+
T Consensus 692 -~~KT-~ILVTHql~~L~~ad~Iivl~~G~I~~~G 724 (1381)
T KOG0054|consen 692 -RGKT-VILVTHQLQFLPHADQIIVLKDGKIVESG 724 (1381)
T ss_pred -cCCE-EEEEeCchhhhhhCCEEEEecCCeEeccc
Confidence 4567 89999999999999999999999997543
No 423
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.88 E-value=7.6e-09 Score=116.63 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------cccccccccccc-hhhHHh-h---
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEYAKVP-WFDSVF-A--- 458 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------~~vpa~~~~~i~-~~~~i~-~--- 458 (798)
+.+.++...++|. +.|.-+.|+||||||||.|+|+||++....+.- +|+|.+.....+ +.||+. .
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcH
Confidence 4456677778887 777889999999999999999998875433322 233432111111 112221 1
Q ss_pred ----h--cCchh-----------hHhh----------hhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 459 ----D--IGDEQ-----------SLSQ----------SLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 459 ----~--ig~~~-----------si~~----------~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
+ +++.+ .+.+ .-.-+| |+.+|+..+...-+.|...+|||-|++..+.--.
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~-- 649 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG-- 649 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH--
Confidence 1 11111 1111 111233 4567777777778999999999999999883322
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELKTLKY 540 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~~~a~ 540 (798)
.+.+...+.|.+ .|-+||.+.+-.|-.
T Consensus 650 --~i~~~ak~~gi~-llsithrpslwk~h~ 676 (728)
T KOG0064|consen 650 --KIFQAAKDAGIS-LLSITHRPSLWKYHT 676 (728)
T ss_pred --HHHHHHHhcCce-EEEeecCccHHHHHH
Confidence 344566778998 899999988866543
No 424
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.81 E-value=1e-08 Score=104.22 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEE
Q 003747 475 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 550 (798)
Q Consensus 475 ~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v 550 (798)
|+-+++..+++.+..|.|||-||||+.++|.....++. ++..+.+...|.|++++||.... +.|+++-.+.-|.-
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 45566777778899999999999999999988888765 67777766444599999997655 68888776666554
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.80 E-value=4.8e-08 Score=100.94 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHH-----HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 472 TFSGHLKQIGNII-----SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 472 tfs~~~~ri~~il-----~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
.+|++.+.+..+. ....+.+++|||||.++||+.....++. ++..+.. +.- +|+|||+..+...++..+++
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q-~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQ-FIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSE-EEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccc-cccccccccccccccccccc
Confidence 5666655433322 2357889999999999999977777654 5554443 354 89999999999888766554
No 426
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=1.6e-08 Score=108.38 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=38.5
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh---ccccceeeeEE
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK---YSNDFFENACM 550 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a---~~~~~l~ng~v 550 (798)
..+|+++|||||++++|+.....+.. .+.+.+.+ +|++||...+..++ ..+..+.+|+|
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~~----~l~~~~q~-ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALLD----AIEGRVQT-FVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHHH----HhhcCCCE-EEEeCCchhccchhccCccEEEEeCcEE
Confidence 47999999999999999966665543 34344443 45555555555665 44566666654
No 427
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.79 E-value=2.4e-08 Score=114.20 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=100.7
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cc-ccccccccccc------
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SG-LHILSSEYAKV------ 450 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G-~~vpa~~~~~i------ 450 (798)
...|++|+ ..|++++|.|==|+|+|-++++|.+..-... .| .|+|. +...-
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E-DRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE-DRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCc-ccccCcCcCCC
Confidence 46677777 7899999999999999999999965321110 01 13332 11100
Q ss_pred chhhHH--------------------------hhhcCc-hhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 451 PWFDSV--------------------------FADIGD-EQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 451 ~~~~~i--------------------------~~~ig~-~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
++.+++ ...+++ ..+..+..+++||+-| ++....-++.+|++|||||||.|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 111110 111111 1123345567776654 455555568999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEec-chhHHhhhccccceeeeEEEE
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTH-HGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTH-d~el~~~a~~~~~l~ng~v~f 552 (798)
|......+ ..++..|++.|.+ ||++|- ..|+..+||++..+.+|.+.-
T Consensus 433 DVGAK~eI-y~li~~lA~~G~a-il~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 433 DVGAKAEI-YRLIRELAAEGKA-ILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred ccchHHHH-HHHHHHHHHCCCE-EEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99777777 5688899999998 555555 467778999999999999864
No 428
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.77 E-value=2.6e-08 Score=127.89 Aligned_cols=83 Identities=22% Similarity=0.117 Sum_probs=64.2
Q ss_pred hhhhhH-HHHHHHHHHHhCC---CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 470 LSTFSG-HLKQIGNIISQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 470 lstfs~-~~~ri~~il~~a~---~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
..|+|| +.+|+..+..+.. .+.|++|||||.||++.+...+.. +++.|.+.|.| ||++.||.++...||.++-+
T Consensus 1697 ~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~t-vivieH~~~~i~~aD~iidl 1774 (1809)
T PRK00635 1697 LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHS-VIYIDHDPALLKQADYLIEM 1774 (1809)
T ss_pred CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCe-EEEEeCCHHHHHhCCEEEEc
Confidence 345664 5566666655543 379999999999999999999865 78889999998 99999999999888877654
Q ss_pred ------eeeEEEEec
Q 003747 546 ------ENACMEFDE 554 (798)
Q Consensus 546 ------~ng~v~fd~ 554 (798)
..|.+.+.+
T Consensus 1775 gp~gG~~GG~iva~G 1789 (1809)
T PRK00635 1775 GPGSGKTGGKILFSG 1789 (1809)
T ss_pred CCCcccCCCEEEEEe
Confidence 345666644
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=100.59 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=46.4
Q ss_pred HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003747 480 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 538 (798)
Q Consensus 480 i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~ 538 (798)
+..+....++.-+.|||||-++|.|....+++ +++..+.+.|.- +|++||.+-+..+
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ-~IiATHSPiLlAi 193 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQ-IIIATHSPILLAI 193 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCe-EEEEecChhheeC
Confidence 44444567888999999999999997777775 688889999986 9999999777543
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.73 E-value=3.1e-08 Score=106.41 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=59.6
Q ss_pred eEEEEEecCCCCchhhhhhcchhhhhcccccc-cccccccccchh---hHHhhhc-Cchhh-HhhhhhhhhHHH-HHHHH
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSEYAKVPWF---DSVFADI-GDEQS-LSQSLSTFSGHL-KQIGN 482 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~-vpa~~~~~i~~~---~~i~~~i-g~~~s-i~~~lstfs~~~-~ri~~ 482 (798)
.-++|+||||||||||+++|++...... |.. +.. ..+... ..+...+ +..|. +....+.+.+-. ..-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~-G~i~~~g---~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI-SQLGLRG---KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC-ceEEECC---EEeecchhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 4589999999999999999975543322 211 111 111111 1111111 11110 000001011000 00112
Q ss_pred HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003747 483 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 539 (798)
Q Consensus 483 il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a 539 (798)
.+..+.+|+++|+|||++. ....++++.+. .|.+ +|+|||+..+...+
T Consensus 188 ~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~-vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVS-IIATAHGRDVEDLY 235 (270)
T ss_pred HHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCE-EEEEechhHHHHHH
Confidence 2233469999999999632 22345555554 6887 99999987775543
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.66 E-value=1e-07 Score=112.53 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=57.5
Q ss_pred hhhhhH-HHHHHHHHHHh---CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 470 LSTFSG-HLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 470 lstfs~-~~~ri~~il~~---a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
..|+|| +.||+..+..+ .+...|.||||||.||-+.+...+.. ++..|.+.|.| ||++.|++++..-||.++
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnT-ViVIEHNLdVIk~AD~II 895 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNT-VIVIEHNLDVIKTADWII 895 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEecccceEeecCEEE
Confidence 446664 45666555433 67789999999999999999999865 88889999998 999999999877666554
No 432
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=1.2e-07 Score=119.02 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=100.6
Q ss_pred cCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc------------cccc--------cccccc------
Q 003747 394 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------KSGL--------HILSSE------ 446 (798)
Q Consensus 394 ~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a------------q~G~--------~vpa~~------ 446 (798)
++...|++++++. ++|+-+||+|.-|||||||+.++-.+.... +.|+ .+|.+.
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 3446799999999 888889999999999999999884333211 1121 234311
Q ss_pred -ccccchhhH-----H---hhhcCc-----------hhhHhhhhhhhhHHHHHHHHH-HHhCCCCeEEEEecCCCCCChH
Q 003747 447 -YAKVPWFDS-----V---FADIGD-----------EQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 447 -~~~i~~~~~-----i---~~~ig~-----------~~si~~~lstfs~~~~ri~~i-l~~a~~psLLLLDEP~sGlDp~ 505 (798)
...+..+++ + +..-.. +..+..+=+.||.+++++..+ .+++.+.++|+|||.|++.|+
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~- 1308 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP- 1308 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh-
Confidence 011111211 1 111111 111222224577666665544 466899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEE
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 551 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~ 551 (798)
+...+.+..++.- =.+|| ||.+-|..+-..-+|++..+.+|++.
T Consensus 1309 ~TD~lIQ~tIR~~-F~dcT-VltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1309 ETDALIQKTIREE-FKDCT-VLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred HHHHHHHHHHHHH-hcCCe-EEEEeeccchhhhcCeEEEeeCCeEe
Confidence 5566555444321 12677 99999998888889999999999985
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.59 E-value=2.3e-07 Score=97.53 Aligned_cols=142 Identities=11% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCCeEEEEEecCCCCchhh-hhhcchhhhhcccccccccccccccchhhHHhhhcCc--hhhHhhh----h---hhhhHH
Q 003747 407 RKTRVLVITGPNTGGKTIC-LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD--EQSLSQS----L---STFSGH 476 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTL-LK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~--~~si~~~----l---stfs~~ 476 (798)
+.|++++|+||||+||||| ++.+.........+.++.. +...-.+..+. ..+|. .+....+ + ..+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4578999999999999999 5666543322223334433 21111111111 22222 1110000 0 001111
Q ss_pred ---HHHHHHHHHh--CCCCeEEEEecCCCCC----ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh--hhccccce
Q 003747 477 ---LKQIGNIISQ--STSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT--LKYSNDFF 545 (798)
Q Consensus 477 ---~~ri~~il~~--a~~psLLLLDEP~sGl----Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~--~a~~~~~l 545 (798)
...+..++.. ..+|+++++|||++++ |+.....+ ..+++.+.+.|.+ +++| |+..... .......+
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~g~t-vi~t-~~~~~~~~~~~~~~~~~ 176 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSLNKV-IILT-ANPKELDESVLTILRTA 176 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhCCCE-EEEE-ecccccccccceeEEEe
Confidence 1122222222 3589999999999999 66545555 4566777777775 5554 5533221 11123445
Q ss_pred eeeEEEEe
Q 003747 546 ENACMEFD 553 (798)
Q Consensus 546 ~ng~v~fd 553 (798)
.+|.+.++
T Consensus 177 ~DgvI~L~ 184 (230)
T PRK08533 177 ATMLIRLE 184 (230)
T ss_pred eeEEEEEE
Confidence 56666544
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.57 E-value=1.2e-07 Score=96.00 Aligned_cols=60 Identities=25% Similarity=0.269 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHH---hCCCC-eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 474 SGHLKQIGNIIS---QSTSQ-SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 474 s~~~~ri~~il~---~a~~p-sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
|.+.+++..++. ..... .++++|||-++|.|.....++. ++..+...+.- +|+|||.+.+
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~Q-viitTHSp~i 301 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQ-VIITTHSPFI 301 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSE-EEEEES-GGG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCE-EEEeCccchh
Confidence 666666643332 23333 9999999999999977766654 44444444665 9999999766
No 435
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.3e-07 Score=116.33 Aligned_cols=95 Identities=21% Similarity=0.153 Sum_probs=72.8
Q ss_pred hhcCchhh-HhhhhhhhhHHHHH-HHHHHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 458 ADIGDEQS-LSQSLSTFSGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 458 ~~ig~~~s-i~~~lstfs~~~~r-i~~il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
..+|+... +.+...++|+++++ +..+.+++.+| .++||||||+||||.+...+.. ++..|.+.|.| ||+++|+.
T Consensus 472 ~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~T-VIvVeHd~ 549 (924)
T TIGR00630 472 IDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNT-VIVVEHDE 549 (924)
T ss_pred hhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCE-EEEEECCH
Confidence 34455432 45667888876654 44444555554 8999999999999988888765 77778888988 99999999
Q ss_pred hHHhhhccccce------eeeEEEEec
Q 003747 534 ELKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 534 el~~~a~~~~~l------~ng~v~fd~ 554 (798)
++...||++..+ .+|.+.+++
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeecc
Confidence 988899999988 789887653
No 436
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.53 E-value=2.8e-07 Score=102.16 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=89.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-------ccccc-----ccccccc--------------hhhHHhhhc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------LHILS-----SEYAKVP--------------WFDSVFADI 460 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-------~~vpa-----~~~~~i~--------------~~~~i~~~i 460 (798)
.+.++++.+|.||-|||||++++++..-....| ++.|. .+.+.-. +..++..-+
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL 444 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL 444 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh
Confidence 456889999999999999999997633222211 11121 0110000 112233334
Q ss_pred CchhhHhhhhhhhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003747 461 GDEQSLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 538 (798)
Q Consensus 461 g~~~si~~~lstfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~ 538 (798)
..++-+.+.+.++| ||+++++.++.+-.++++.|+|||.+-+|.+.....+..+.+.+...+.| -+++.||.-.+.|
T Consensus 445 ~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt-afvVEhdfImaTY 522 (592)
T KOG0063|consen 445 QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT-AFVVEHDFIMATY 522 (592)
T ss_pred hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch-hhhhhhHHHHHHh
Confidence 56677777888888 47788888888888999999999999999966666555555556666676 7999999888764
No 437
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.52 E-value=1.8e-07 Score=115.33 Aligned_cols=96 Identities=20% Similarity=0.136 Sum_probs=73.5
Q ss_pred hhhcCchhh-HhhhhhhhhHHHHHHHH-HHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 457 FADIGDEQS-LSQSLSTFSGHLKQIGN-IISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 457 ~~~ig~~~s-i~~~lstfs~~~~ri~~-il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
+..+|+... +.....++|+++++... +.+++.+| .|+||||||+||||.+...+.. ++..|.+.|.| ||++||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~T-VIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNT-LIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCC
Confidence 344555432 45677788876655444 44555665 8999999999999988888765 77778888998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEec
Q 003747 533 GELKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 533 ~el~~~a~~~~~l------~ng~v~fd~ 554 (798)
.+....||++..+ .+|.+.+++
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~g 578 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVASG 578 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeecc
Confidence 9888889999988 888987653
No 438
>PRK13695 putative NTPase; Provisional
Probab=98.48 E-value=1.7e-07 Score=93.70 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=42.9
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEE
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 550 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v 550 (798)
....+|++||+|||+. ++..+ ..... .+..+.+.|.+ +|+|+|+.....+++++..+.++.+
T Consensus 92 ~~l~~~~~lllDE~~~-~e~~~-~~~~~-~l~~~~~~~~~-~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 92 RALEEADVIIIDEIGK-MELKS-PKFVK-AVEEVLDSEKP-VIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred hccCCCCEEEEECCCc-chhhh-HHHHH-HHHHHHhCCCe-EEEEECchhhHHHHHHHhccCCcEE
Confidence 3467999999999742 33322 23333 33344467887 9999999877778888888777766
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=1.7e-06 Score=83.17 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=62.6
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhc-ccccccccccccccchhhHH--hhhcCchhhHhh--hhh-h-hhHHHHHHHHH
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ--SLS-T-FSGHLKQIGNI 483 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~a-q~G~~vpa~~~~~i~~~~~i--~~~ig~~~si~~--~ls-t-fs~~~~ri~~i 483 (798)
+++|+||||+||||+++.++...... ..-.++.. +.......... +...+..+.... ... . ......+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI-EEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC-CcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 37899999999999999985433221 11112222 11111111100 111111111000 000 0 01122234444
Q ss_pred HHhCCCCeEEEEecCCCCCChH---------HHHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 484 ISQSTSQSLVLLDEIGAGTNPL---------EGTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 484 l~~a~~psLLLLDEP~sGlDp~---------eg~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
.....++.++++|||++-+++. ........+...+.+.+++ +|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVT-VIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCce-EEEEEecCC
Confidence 5567899999999999543332 2234445566666667887 899999754
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=2.2e-06 Score=98.01 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=87.3
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccc-cccccccc-hhhHHhhhc----------Cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSEYAKVP-WFDSVFADI----------GD 462 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vp-a~~~~~i~-~~~~i~~~i----------g~ 462 (798)
+..+.+++ +. ..|+.++|+||||+|||||+++|++.... ..|.+.- ......+. +....+..- ..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 44566777 66 77888999999999999999998654322 2222111 10111111 001000000 00
Q ss_pred hhh-HhhhhhhhhHHHHHHHHHHHhCCCCeEEEEe-----------------cC--CCCCChHHHHHHHHHHHHHHHh--
Q 003747 463 EQS-LSQSLSTFSGHLKQIGNIISQSTSQSLVLLD-----------------EI--GAGTNPLEGTALGMSLLEAFAE-- 520 (798)
Q Consensus 463 ~~s-i~~~lstfs~~~~ri~~il~~a~~psLLLLD-----------------EP--~sGlDp~eg~al~~all~~L~~-- 520 (798)
+++ +.+....+.+ ..++.-++.....=||++| || ++|+||.....+ ..+++.+..
T Consensus 223 ~~~~~~r~~~~~~a--~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~~ 299 (438)
T PRK07721 223 DQPALMRIKGAYTA--TAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTNA 299 (438)
T ss_pred CCCHHHHHHHHHHH--HHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCCC
Confidence 111 1111111100 0122222334555677777 75 689999555555 457777763
Q ss_pred cCC-----cEEEEEecchhHHhhhccccceeeeEEEEecc
Q 003747 521 SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 521 ~g~-----t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
.|. | |++.+||++. .+|+++..+.+|++.++..
T Consensus 300 ~GsIT~~~T-Vlv~~hdm~e-~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 300 SGSITAFYT-VLVDGDDMNE-PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCeeeEEE-EEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence 464 6 8999999873 7899999999999998763
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.32 E-value=1.5e-06 Score=86.85 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=36.4
Q ss_pred CCCCeEEEEecCCCCCC---hHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 487 STSQSLVLLDEIGAGTN---PLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 487 a~~psLLLLDEP~sGlD---p~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
..+|+++++|||++.+| +.... ....++..+...|+| +|+++|+...
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~-~i~~l~~~l~~~g~t-vi~v~~~~~~ 142 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARL-EIRRLLFALKRFGVT-TLLTSEQSGL 142 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHH-HHHHHHHHHHHCCCE-EEEEeccccC
Confidence 46899999999999998 53333 345577778888888 8999998654
No 442
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.28 E-value=3.4e-06 Score=88.31 Aligned_cols=143 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh-hhcccccccccccccccchhhHHhhhcCc--hhhHhhh-----------hhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHILSSEYAKVPWFDSVFADIGD--EQSLSQS-----------LST 472 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~~vpa~~~~~i~~~~~i~~~ig~--~~si~~~-----------lst 472 (798)
+.|.++.|+||+|+|||||...++.-. .....++|+.. +...-.+..+ +..+|. .+.+..+ ...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 468899999999999999999874221 12223344433 1111111111 122221 1111110 011
Q ss_pred hhHHHHHHHH-HHHhC--CCCeEEEEecCCCCCC---hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccce
Q 003747 473 FSGHLKQIGN-IISQS--TSQSLVLLDEIGAGTN---PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFF 545 (798)
Q Consensus 473 fs~~~~ri~~-il~~a--~~psLLLLDEP~sGlD---p~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l 545 (798)
.+..+.++.. +...+ .+|+++++|||++.+| +.....+.. .+..+.+.|+| +++++|..... ..+.....+
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~t-vllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKT-ILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCCcCCHHHHHHHHhh
Confidence 1112222222 22222 4899999999996544 433223322 34445667887 88999975432 233334455
Q ss_pred eeeEEEEe
Q 003747 546 ENACMEFD 553 (798)
Q Consensus 546 ~ng~v~fd 553 (798)
.+|.+.++
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 56666554
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=9.8e-06 Score=74.63 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCCchhhhhhcchhh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+..++|+||+|+||||+++.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4568999999999999999986433
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.17 E-value=3.4e-06 Score=86.54 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCC
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 490 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~p 490 (798)
+++|+||+||||||+++.+.........+..+.......+. .......+. ...+.....+|... +... +..+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~a--Lr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAA--LRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHH--hcCCc
Confidence 58999999999999999874322211112111110111100 000000000 00000011223222 1222 34589
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 491 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 491 sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
+++++||| .|+.. +..+++ ....|.. ++.|+|..+.....++..
T Consensus 76 d~ii~gEi---rd~e~----~~~~l~-~a~~G~~-v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 76 DVILVGEM---RDLET----IRLALT-AAETGHL-VMSTLHTNSAAKTIDRII 119 (198)
T ss_pred CEEEEcCC---CCHHH----HHHHHH-HHHcCCE-EEEEecCCcHHHHHhHHH
Confidence 99999999 57643 233333 3456887 899999877665555443
No 445
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.09 E-value=1.6e-05 Score=94.01 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=78.8
Q ss_pred hhhHHH-HHHHHHHHhCC----CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccee
Q 003747 472 TFSGHL-KQIGNIISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 472 tfs~~~-~ri~~il~~a~----~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
.+|+++ +++..+++.+. +|+++|||||++|+|+.....+.. ++..+.. +.+ ||++||++.+..+|+++..+.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~-vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQ-VLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCE-EEEEEChHHHHHhcCeEEEEE
Confidence 455544 55555555544 469999999999999977777765 6666654 777 999999999998999888887
Q ss_pred eeEEEEecccceeeEEeecCCCCCchHHHHHHHcC---CChHHHHHHHHHH
Q 003747 547 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 594 (798)
Q Consensus 547 ng~v~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~~ 594 (798)
++.. +.. |+.-..-..+.---.+||+++| ..+.-+..|++++
T Consensus 517 k~~~--~~~----t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGR----TATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCc----EEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6642 222 2222222345556788999994 3456678888775
No 446
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=5.6e-06 Score=102.74 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=97.2
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----cc----ccc----ccccccccccch------------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AK----SGL----HILSSEYAKVPW------------ 452 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq----~G~----~vpa~~~~~i~~------------ 452 (798)
.+++|++.- +.|+++.+.||.|||||||||.+++..-- .. .|. ++|....+.++.
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 578888866 88999999999999999999999643210 00 010 011000011111
Q ss_pred ---------------------------hhHHhhhcCchhhHhhh-----hhhhhH-HHHHHHHHHHhCCCCeEEEEecCC
Q 003747 453 ---------------------------FDSVFADIGDEQSLSQS-----LSTFSG-HLKQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 453 ---------------------------~~~i~~~ig~~~si~~~-----lstfs~-~~~ri~~il~~a~~psLLLLDEP~ 499 (798)
.+.++..+|+....+.. ....|| +.+|+...-..+.+++++.+||+|
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 11222333332221111 112233 344444444568899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc--hhHHhhhccccceeeeEEEEec
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHH--GELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd--~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+|||....-.++..+...-+..+.| ++++-|. .+...+-|++..+.+|.+.|.+
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t-~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGAT-ALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcce-EEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 9999988888877555544445676 6777776 4555778899999999998865
No 447
>PRK10869 recombination and repair protein; Provisional
Probab=98.05 E-value=2.5e-05 Score=92.16 Aligned_cols=113 Identities=20% Similarity=0.265 Sum_probs=78.5
Q ss_pred hhH-HHHHHHHHHHhCC----CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceee
Q 003747 473 FSG-HLKQIGNIISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 547 (798)
Q Consensus 473 fs~-~~~ri~~il~~a~----~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~n 547 (798)
+|+ +++++..++..+. +|+++|||||++|+|+.....+.. ++..+.. +.+ ||++||++.++.+|++++.+..
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~q-vi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQ-VMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCE-EEEEecCHHHHHhCCEEEEEec
Confidence 444 4556666655543 689999999999999977777655 6666654 576 9999999999999998887765
Q ss_pred eEEEEecccceeeEEeecCCCCCchHHHHHHHcC---CChHHHHHHHHHH
Q 003747 548 ACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 594 (798)
Q Consensus 548 g~v~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~~ 594 (798)
+.. +. .||.-..-..+.---.+||+++| ..+.-+..|++++
T Consensus 508 ~~~--~~----~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ETD--GG----MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred ccc--CC----eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 441 11 23322222345556788999994 2466688888776
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.04 E-value=3e-06 Score=92.79 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh-HHhhhcCchhhHhhhhhhhhHHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD-SVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 485 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lstfs~~~~ri~~il~ 485 (798)
..+..++|+||+||||||||+++.... ....+...-. +...+.... +....+...+ ......++ +..+.. ..
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie-d~~El~~~~~~~~~l~~~~~--~~~~~~~~--~~~~l~-~~ 214 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE-DTREIFLPHPNYVHLFYSKG--GQGLAKVT--PKDLLQ-SC 214 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc-CccccCCCCCCEEEEEecCC--CCCcCccC--HHHHHH-HH
Confidence 356779999999999999999884322 1111211100 111111100 0000000000 00000111 111111 12
Q ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEE
Q 003747 486 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 551 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~ 551 (798)
+..+|+++++|||.+ . .. ..+++.+. .|...++.|+|........++...+..+.+.
T Consensus 215 Lr~~pd~ii~gE~r~---~----e~-~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~ 271 (308)
T TIGR02788 215 LRMRPDRIILGELRG---D----EA-FDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQA 271 (308)
T ss_pred hcCCCCeEEEeccCC---H----HH-HHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhcccc
Confidence 357999999999964 2 22 23555555 4554369999998877777777666555543
No 449
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.04 E-value=9.2e-06 Score=90.43 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=52.3
Q ss_pred hhh-HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003747 472 TFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 539 (798)
Q Consensus 472 tfs-~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a 539 (798)
.+| |+.++.+.++..++..++.++|||.+-||.......+. .++.|..-... ||++.||+.+..|-
T Consensus 213 ~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~Y-iIVVEHDLsVLDyl 279 (592)
T KOG0063|consen 213 QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRY-IIVVEHDLSVLDYL 279 (592)
T ss_pred hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCe-EEEEEeechHHHhh
Confidence 344 46777777788899999999999999999988777765 55556666666 89999999887643
No 450
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=1.8e-05 Score=100.06 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=55.1
Q ss_pred hhhhhhhHHHHHHHH-HHHhCC----------CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 468 QSLSTFSGHLKQIGN-IISQST----------SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 468 ~~lstfs~~~~ri~~-il~~a~----------~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
..+.++|++++.... +++++. +|++|||||||+|+|+.....+ ..++..+...|.+ |++|||+.++.
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~~g~~-i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIREGSKM-IGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHhCCCE-EEEEeCcHHHH
Confidence 456788888765433 333321 7999999999999999665555 4577778777887 89999999988
Q ss_pred h-hhccccce
Q 003747 537 T-LKYSNDFF 545 (798)
Q Consensus 537 ~-~a~~~~~l 545 (798)
. +++++..+
T Consensus 1024 ~~~~~~i~v~ 1033 (1042)
T TIGR00618 1024 ERIPHRILVK 1033 (1042)
T ss_pred HhhCCEEEEE
Confidence 6 55554443
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=97.82 E-value=3.9e-05 Score=95.10 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=56.2
Q ss_pred hhhhhhHHHHHHHHH-------HHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 469 SLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 469 ~lstfs~~~~ri~~i-------l~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
...++|++++....+ ..++.+|+++||||||+|+|+.....+.. ++..+...+.+ ||++||+.++..+|++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~-iiiith~~~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQ-VIIVSHDEELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCE-EEEEECCHHHHHhCCe
Confidence 445677777653221 23468899999999999999977777765 44555556676 9999999998888887
Q ss_pred cccee
Q 003747 542 NDFFE 546 (798)
Q Consensus 542 ~~~l~ 546 (798)
++.|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 76664
No 452
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.79 E-value=0.0001 Score=83.90 Aligned_cols=152 Identities=11% Similarity=0.087 Sum_probs=100.1
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------ccccccccccc-----c
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEYA-----K 449 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------~G~~vpa~~~~-----~ 449 (798)
....+++|+ +.|++++|.|-.|-|-+.|+..|+++..... .-.|+|.+... .
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 567789999 8999999999999999999999977642221 01133421100 1
Q ss_pred cchhhHH----------------------------hhhcCch-hhHhhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCC
Q 003747 450 VPWFDSV----------------------------FADIGDE-QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIG 499 (798)
Q Consensus 450 i~~~~~i----------------------------~~~ig~~-~si~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~ 499 (798)
+++.+++ ...+.+. .+......++||+ +|++.....+..+|+||++..||
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 1111111 1111111 1112223456654 45555556678999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhccccceeeeEEE
Q 003747 500 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 551 (798)
Q Consensus 500 sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~-el~~~a~~~~~l~ng~v~ 551 (798)
.|+|......+-..++ ..++.|+. |+++|-|+ ++..+||++..+.+|.+.
T Consensus 432 rGLDvgA~~~I~~~l~-e~r~~G~A-VLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 432 RGLDVGAIEFIHERLL-ELRDAGKA-VLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred ccccHHHHHHHHHHHH-HHHhcCCE-EEEEehhHHHHHHhhheeeeeeCCcee
Confidence 9999966666655444 56888988 78888875 455799999999999985
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.76 E-value=4.5e-05 Score=84.89 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=58.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhC
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 487 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a 487 (798)
.+.+++|+||+||||||+|+.+.........+..+...+...+.. ......+... .+.....+|... +..+ +-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~~i~q~-evg~~~~~~~~~---l~~~--lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRSLINQR-EVGLDTLSFANA---LRAA--LR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccceEEcc-ccCCCCcCHHHH---HHHh--hc
Confidence 346799999999999999998743221111122211111111100 0000000000 000000122211 2222 34
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
.+|+++++||+ .|+..... .++ ....|.. |+.|.|-.......++
T Consensus 194 ~~pd~i~vgEi---rd~~~~~~----~l~-aa~tGh~-v~~T~Ha~~~~~~~~R 238 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETVEL----ALT-AAETGHL-VFGTLHTNSAAQTIER 238 (343)
T ss_pred cCCCEEEEeCC---CCHHHHHH----HHH-HHHcCCc-EEEEEcCCCHHHHHHH
Confidence 79999999999 68844332 233 3566887 8999997655543333
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.75 E-value=2.1e-05 Score=73.22 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=30.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..++.++++. .++++++|+||+|||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4578888888 788999999999999999999974
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=97.75 E-value=6.3e-05 Score=93.68 Aligned_cols=77 Identities=21% Similarity=0.168 Sum_probs=56.5
Q ss_pred hhhhhhHHHHHHHHH-------HHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--CcEEEEEecchhHHhhh
Q 003747 469 SLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG--SLLTIATTHHGELKTLK 539 (798)
Q Consensus 469 ~lstfs~~~~ri~~i-------l~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g--~t~VIitTHd~el~~~a 539 (798)
....+|++++....+ ..++.+|++++|||||+|+|+.....+...+...+...+ .+ +|++||+.++..+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~-ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQ-VIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEECchHHHHhc
Confidence 456678777544332 244689999999999999999777777654433444443 35 89999999999988
Q ss_pred cccccee
Q 003747 540 YSNDFFE 546 (798)
Q Consensus 540 ~~~~~l~ 546 (798)
++++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 8887765
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.70 E-value=2.7e-05 Score=65.44 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=26.3
Q ss_pred eeEEECCCCeEEEEEecCCCCchhhhhhcch
Q 003747 401 IDIFIARKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 401 ~disL~~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++.++..|.++.|+||||+||||+|..+..
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5677776677899999999999999999843
No 457
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00013 Score=68.11 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+..+.|+||.|+||||+++.++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998543
No 458
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.66 E-value=6.3e-05 Score=88.55 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=54.6
Q ss_pred hhhhhhHHHHHHHHHH-HhC----------CCCeEEEEecCC-CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 469 SLSTFSGHLKQIGNII-SQS----------TSQSLVLLDEIG-AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 469 ~lstfs~~~~ri~~il-~~a----------~~psLLLLDEP~-sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
...++|+++++...+. +++ .+|+++|||||| +++|+.....+.. ++..+ .|.+ ||++||+.++.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~~~~-iiiish~~~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--KDTN-VFVISHKDHDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--CCCe-EEEEECchhch
Confidence 4466777665544333 332 589999999998 7899977666654 55555 4677 89999998888
Q ss_pred hhhccccceee
Q 003747 537 TLKYSNDFFEN 547 (798)
Q Consensus 537 ~~a~~~~~l~n 547 (798)
..++++..+.+
T Consensus 541 ~~~d~~~~l~~ 551 (562)
T PHA02562 541 QKFDRHLKMEK 551 (562)
T ss_pred hhhhcEEEEEE
Confidence 88888877765
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.60 E-value=0.0002 Score=75.34 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=32.5
Q ss_pred CCCCeEEEEecCCC------CCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 487 STSQSLVLLDEIGA------GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 487 a~~psLLLLDEP~s------GlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
..+|++|++| |.+ ..|+.....+...+.+...+.|++ ||+++|..
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~a-vl~v~H~~ 159 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAA-ILLVHHVR 159 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCE-EEEEeccC
Confidence 4799999999 765 368866666665444433456887 89999975
No 460
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.00021 Score=92.45 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=51.0
Q ss_pred hhhhHHHHH-------HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH----hcCCcEEEEEecchhHHh-h
Q 003747 471 STFSGHLKQ-------IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELKT-L 538 (798)
Q Consensus 471 stfs~~~~r-------i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~----~~g~t~VIitTHd~el~~-~ 538 (798)
..+|+++++ +..+.+++.+|.+|+|||||+|+|+.....+...+...+. ..|.+ ||++|||.++.. +
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~-viiitHd~~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQ-LLVITHDEDFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCe-EEEEecCHHHHHHH
Confidence 467777764 4555567899999999999999999887777665554332 23677 999999998875 4
Q ss_pred h
Q 003747 539 K 539 (798)
Q Consensus 539 a 539 (798)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 461
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.57 E-value=0.00036 Score=86.13 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCCeEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 487 STSQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 487 a~~psLLLLDEP~sGl-Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
..+|.++++|||..++ ||... ..+..+++.+++.|++ ++++||+.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~-~~i~~~lk~~RK~~~~-vil~Tq~~~d~ 698 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFR-DKIREWLKVLRKANCA-VVLATQSISDA 698 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHH-HHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 5799999999999999 67544 4445677778888887 99999997665
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.54 E-value=0.0001 Score=74.72 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..++.++|+||||||||||+++|...
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999998644
No 463
>PRK04296 thymidine kinase; Provisional
Probab=97.50 E-value=0.00068 Score=69.22 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=73.0
Q ss_pred CeEEEEEecCCCCchhhhhhcchhhhhc-cccc-ccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLAVMMA-KSGL-HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 486 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll~~~a-q~G~-~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~ 486 (798)
|.+++|+||.|+||||++..+....... .... +.|. -..+.. ...+..++|..-.. ............+.. .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~-~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~ 75 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA-IDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---E 75 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc-cccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---h
Confidence 5789999999999999877653221111 1111 1121 011111 12234444421100 000011111111111 2
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc-----------hhHHhhhccccceeeeEEEEecc
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-----------GELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd-----------~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
..+.++|++||.-- ++.. .+ ..+++.+...|.+ ||++.++ ..+..++|.+..+..-++. -+.
T Consensus 76 ~~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~-vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~-Cg~ 148 (190)
T PRK04296 76 GEKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIP-VICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVH-CGR 148 (190)
T ss_pred CCCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCe-EEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccc-cCC
Confidence 45779999999932 4432 23 3467777888998 8999998 3444567776665544432 223
Q ss_pred cceeeEEeec
Q 003747 556 KLKPTYKILW 565 (798)
Q Consensus 556 ~l~ptY~L~~ 565 (798)
.-..++|+..
T Consensus 149 ~a~~~~r~~~ 158 (190)
T PRK04296 149 KATMNQRLID 158 (190)
T ss_pred ccceEEEEeC
Confidence 3344566653
No 464
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.50 E-value=0.00017 Score=91.19 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=52.0
Q ss_pred hhhhhhhHHHHHHHHHH-HhC--------CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003747 468 QSLSTFSGHLKQIGNII-SQS--------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 537 (798)
Q Consensus 468 ~~lstfs~~~~ri~~il-~~a--------~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~ 537 (798)
..+.++|++++.+..+. +++ .+|++|||||||+|+|+.....+ ..++..+...|.+ |+++||..++..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~-~~~l~~l~~~g~~-v~iisH~~~l~~ 1021 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTA-LDALDALNASGKT-IGVISHVEAMKE 1021 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHCCCE-EEEEecHHHHHH
Confidence 45678888776554443 333 27999999999999999666665 5578888888887 999999888865
No 465
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.50 E-value=0.00016 Score=74.52 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=27.5
Q ss_pred HHHhCCCCeEEEEecCC-----CCCChHHHHHHHHHHHHHHH
Q 003747 483 IISQSTSQSLVLLDEIG-----AGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 483 il~~a~~psLLLLDEP~-----sGlDp~eg~al~~all~~L~ 519 (798)
+..++.+|+++++|||| +|+||.....+.. ++..++
T Consensus 164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~ 204 (215)
T PTZ00132 164 ARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA 204 (215)
T ss_pred HHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence 33557899999999999 9999977666654 555554
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.49 E-value=0.00012 Score=83.54 Aligned_cols=140 Identities=10% Similarity=0.106 Sum_probs=72.3
Q ss_pred EEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccccccc-ccccccc-hhhHHhhhcCchhh-HhhhhhhhhHHHHH
Q 003747 404 FIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS-SEYAKVP-WFDSVFADIGDEQS-LSQSLSTFSGHLKQ 479 (798)
Q Consensus 404 sL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa-~~~~~i~-~~~~i~~~ig~~~s-i~~~lstfs~~~~r 479 (798)
.+. ..|+.++|+||||+|||||+++|++.... ..|.+.-. .....+. ++...+..-+...+ +....+..+..++.
T Consensus 150 ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 150 MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred cceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 355 56778999999999999999998654322 12221111 0111111 11222221121111 11111223333332
Q ss_pred HHH-HH-------HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEE
Q 003747 480 IGN-II-------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 551 (798)
Q Consensus 480 i~~-il-------~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~ 551 (798)
... +. +...++-||++|+||+..|+. ..+.. .+...-..|-+ ..+.||...+.+-+.. ...|++.
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~-~~~~s~l~~L~ERag~---~~~GSiT 301 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKT-LLMESYMKKLLERSGK---TQKGSIT 301 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCee-eeeeccchhHHHHhcc---CCCcceE
Confidence 222 21 223788999999999999984 33322 33333434665 6677786666554433 3466664
No 467
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.48 E-value=0.00047 Score=79.15 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCC-------cEEEEEecchhHHhhhccccceeeeEEEEecc
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGS-------LLTIATTHHGELKTLKYSNDFFENACMEFDEV 555 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~-------t~VIitTHd~el~~~a~~~~~l~ng~v~fd~~ 555 (798)
..|.||.-...+ ..+++.....+. | |++.+||+. ..+++....+.+|++.++..
T Consensus 282 ~~Gypp~~~~~l-~~l~ERag~~~~GSIT~i~t-Vl~~~~d~~-dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 282 TKGYTPSVFSTL-PRLLERAGASGKGSITAFYT-VLVEGDDMN-EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred ccccChhHHHHH-HHHHHHhccCCCCeeeEEEE-EEccCcCCC-cchhhhhccccceEEEEecc
Confidence 458999554454 457777665555 5 788889862 23778888999999998763
No 468
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.46 E-value=0.00015 Score=91.79 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=55.0
Q ss_pred hhhhhhhHHHHHHHHHHHh-----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 468 QSLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 468 ~~lstfs~~~~ri~~il~~-----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
..+..+|+++++...+... +.+|+++|||||++|+|+.....+.. ++..+.. +.+ +|++||++++..+|+++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~-~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQ-FIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCE-EEEEEcChhHHHHhhhH
Confidence 3445677766654444322 46789999999999999977777654 5555554 466 89999999998888887
Q ss_pred ccee
Q 003747 543 DFFE 546 (798)
Q Consensus 543 ~~l~ 546 (798)
+++.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 6653
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.46 E-value=0.0012 Score=68.64 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH--hhhccccceeeeEEEEe
Q 003747 489 SQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK--TLKYSNDFFENACMEFD 553 (798)
Q Consensus 489 ~psLLLLDEP~sGl--Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~--~~a~~~~~l~ng~v~fd 553 (798)
+++++++|-|+.-+ +|.....+...+...+.+.|+| +|+|+|..... .+......+.++-+.+.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~t-vil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFT-ILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCE-EEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 56788888875532 4433344555566667788998 89999964322 11122334556666543
No 470
>PRK06893 DNA replication initiation factor; Validated
Probab=97.46 E-value=0.001 Score=69.83 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCchhhhhhcchhhhhcc-cccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCC
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 488 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~~~aq-~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~ 488 (798)
..+.|.||.|+|||+|+..++.-..... ...|++. .. ...+.. .++....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~--------~~---------------~~~~~~------~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL--------SK---------------SQYFSP------AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH--------HH---------------hhhhhH------HHHhhcc
Confidence 4589999999999999999964322111 1112221 00 000110 1222345
Q ss_pred CCeEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 489 SQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 489 ~psLLLLDEP~sGl-Dp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
+.++|+|||+.... |+.....+ ..+++.+.+.|.+ +|++|++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~-illits~~ 134 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKT-LLLISADC 134 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCc-EEEEeCCC
Confidence 78999999998765 44333344 4567777777776 66666654
No 471
>PRK09183 transposase/IS protein; Provisional
Probab=97.44 E-value=0.00037 Score=74.74 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=55.4
Q ss_pred CCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH-
Q 003747 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII- 484 (798)
Q Consensus 406 ~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il- 484 (798)
-..++.++|+||+|+|||+|...||..... .|..+-. +. ...++..+.... ..+ .+..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~-----~~-~~~l~~~l~~a~--------~~~---~~~~~~~ 159 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRF-----TT-AADLLLQLSTAQ--------RQG---RYKTTLQ 159 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEE-----Ee-HHHHHHHHHHHH--------HCC---cHHHHHH
Confidence 345677999999999999999999643221 2311110 00 011111110000 000 011122
Q ss_pred HhCCCCeEEEEecCCCC-CChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 485 SQSTSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sG-lDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
.....++++++||.+.. .+. +...+...++....+.+ + +|+||+.
T Consensus 160 ~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~-s-~iiTsn~ 205 (259)
T PRK09183 160 RGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKG-S-MILTSNL 205 (259)
T ss_pred HHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcC-c-EEEecCC
Confidence 12467899999999854 555 33334444665555554 4 5777775
No 472
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00037 Score=79.42 Aligned_cols=91 Identities=12% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc---ccccccccccccccchhhHHh---hhcCchhhHhhhhhhhhHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQI 480 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a---q~G~~vpa~~~~~i~~~~~i~---~~ig~~~si~~~lstfs~~~~ri 480 (798)
..|++++++||||+||||+++.|+...... ..+.++.. +..+++.++++. ..+|+.-..... ...+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl 260 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADL 260 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCceecCCC-------HHHH
Confidence 467899999999999999999987643221 12233443 455666666542 122321110000 1112
Q ss_pred HHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 481 GNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 481 ~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
...+..+.+.+++|+|.+ |..+.+.
T Consensus 261 ~~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 261 QLMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHHhcCCCEEEecCC--CCCcchH
Confidence 333445678899999975 6666443
No 473
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.40 E-value=0.0047 Score=76.77 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=55.2
Q ss_pred eEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCC
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTS 489 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~ 489 (798)
..++|+||.|+||||+.+.++..... | .+|..-. ...+ ++.+++.-..-......|...++.+..-+.....
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~---~-~vp~~l~-~~~~---~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~ 271 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIIN---G-EVPEGLK-GRRV---LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEG 271 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhc---C-CCchhhC-CCEE---EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCC
Confidence 34789999999999999998643321 2 3332110 1111 0111111000011112233333434333333467
Q ss_pred CeEEEEecCC----CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 490 QSLVLLDEIG----AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 490 psLLLLDEP~----sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
+.+|++||.= +|-.. .+.... .++.-...+|...+|.+|...+..
T Consensus 272 ~~ILfIDEih~l~~~~~~~-~~~d~~-~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 272 NVILFIDELHTMVGAGKAD-GAMDAG-NMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred CeEEEEecHHHhccCCCCc-cchhHH-HHhcchhhcCCCeEEEcCCCHHHH
Confidence 8999999973 22111 111122 233334445544477777766553
No 474
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.39 E-value=0.0014 Score=79.16 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=23.4
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+++...+..+++|+||||+||||+|+++..+
T Consensus 21 ~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~ 51 (650)
T TIGR03185 21 DLSPSSPKPIILIGGLNGAGKTTLLDAIQLA 51 (650)
T ss_pred eeecCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3333333458999999999999999998543
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.38 E-value=0.0012 Score=68.87 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.|+++.|+||+|+|||||+..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999998644
No 476
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.35 E-value=0.00078 Score=62.88 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.|.||.|+||||+.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57999999999999999864
No 477
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.32 E-value=0.001 Score=75.67 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.|.||+|+|||++.|.++.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999864
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.31 E-value=0.00046 Score=88.35 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.++++++|+||+|.|||||++.+.
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~ 228 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALF 228 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHH
Confidence 567899999999999999999994
No 479
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.27 E-value=0.002 Score=74.21 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=83.4
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcc---cccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhC
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAK---SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 487 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq---~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a 487 (798)
-+.|.||.|+|||.|++.++.-..... ...|+++ . .++..+...+.. .....|. .. ..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~----~f~~~~~~~~~~-----~~~~~f~-------~~--~~ 192 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-E----KFLNDLVDSMKE-----GKLNEFR-------EK--YR 192 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-H----HHHHHHHHHHhc-----ccHHHHH-------HH--HH
Confidence 388999999999999999964322111 1122222 0 011112111110 0011111 11 11
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe-cchhHH-hhhcccc-ceeeeE-EEEecccceeeEEe
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT-HHGELK-TLKYSND-FFENAC-MEFDEVKLKPTYKI 563 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitT-Hd~el~-~~a~~~~-~l~ng~-v~fd~~~l~ptY~L 563 (798)
.++++||+|||....+..........++..+.+.|.. +|++| |+.... .+.++.. .+..|- +.++. |.+..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~-iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~----pd~e~ 267 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP----PDEET 267 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCe-EEEECCCCHHHHHHHHHHHhhHHhcCceEeeCC----CCHHH
Confidence 3689999999998877644333334467777777776 66665 665443 3433322 233332 22221 11100
Q ss_pred ecCCCCCchHHHHHHH--cCCChHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003747 564 LWGVPGRSSAINIAER--LGLPGIVVQNARQLYGAASAEINEVIIEME 609 (798)
Q Consensus 564 ~~G~~g~S~a~~iA~~--~gl~~~ii~~A~~~~~~~~~~le~~I~~Le 609 (798)
... .....++. ..+|+++++.-......+-.+++..+.+|.
T Consensus 268 r~~-----IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 268 RKK-----IARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred HHH-----HHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 000 01111222 346777776655555555566666666654
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.26 E-value=6.6e-05 Score=76.49 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
+++|+||||||||||.++|..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 481
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.26 E-value=0.00035 Score=74.50 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH-HHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEE
Q 003747 478 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA-LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 550 (798)
Q Consensus 478 ~ri~~il~~a~~psLLLLDEP~sGlDp~eg~a-l~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v 550 (798)
+++..+.....++++.+| ||+.+|+.+-.. . +++.+...+.+ .|+.||........+.+..+..|+.
T Consensus 144 q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~-~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 144 RFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNM-ELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred HHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCc-EEEEchHHhhCCCCCeEEEcCCCCc
Confidence 434333333479999999 999999533332 3 25666656677 8999999877776677777766665
No 482
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.26 E-value=0.0012 Score=70.07 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.0
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+..+++|+||||+||||+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999874
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.23 E-value=0.0023 Score=79.08 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
...|.++++|||..++|.......+..+++.+++.|+. ++++||+.+..
T Consensus 640 ~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~-~i~~TQ~~~d~ 688 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTF-VIFATQSVEDA 688 (800)
T ss_pred cCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 56899999999999999324444556677778888887 89999997664
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.00081 Score=81.43 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhccc---ccccccccccccchhhHHh---hhcCchhhHhhhhhhhhHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---GLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQI 480 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~---G~~vpa~~~~~i~~~~~i~---~~ig~~~si~~~lstfs~~~~ri 480 (798)
..+++++++||||+||||++..|+......+. -.++.. +..+++..+++. ..+|+.-..... ...+
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~-------~~~l 254 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKD-------AADL 254 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCC-------HHHH
Confidence 35789999999999999999999765432221 123343 444555544432 223321111111 1223
Q ss_pred HHHHHhCCCCeEEEEecCCCC-CCh
Q 003747 481 GNIISQSTSQSLVLLDEIGAG-TNP 504 (798)
Q Consensus 481 ~~il~~a~~psLLLLDEP~sG-lDp 504 (798)
...+..+.+.++||+|=|+.. .|.
T Consensus 255 ~~al~~~~~~D~VLIDTAGRs~~d~ 279 (767)
T PRK14723 255 RFALAALGDKHLVLIDTVGMSQRDR 279 (767)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCH
Confidence 444445667799999988744 454
No 485
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0021 Score=72.63 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..++++|+||||+||||++..|+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999753
No 486
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.14 E-value=0.004 Score=77.36 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=39.2
Q ss_pred CCCCeEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003747 487 STSQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 537 (798)
Q Consensus 487 a~~psLLLLDEP~sGl-Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~ 537 (798)
..+|.++++|||..++ ||.. ...+...++.+++.|++ ++++||+.+...
T Consensus 685 ~~~p~illlDE~w~~L~d~~~-~~~i~~~lk~~RK~g~~-vil~TQs~~d~~ 734 (852)
T PRK13891 685 KGQPAVIILDEAWLMLGHPAF-RAKIREWLKVLRKANCL-VLMATQSLSDAA 734 (852)
T ss_pred cCCCCEEEEeCchhhcCCHHH-HHHHHHHHHHHHhcCCE-EEEEeCCHHHHh
Confidence 6799999999999999 6744 44455677778888887 899999977653
No 487
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.00025 Score=82.00 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVM 434 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~ 434 (798)
..|.+++++||||+||||++..|+....
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 3568999999999999999999975443
No 488
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0027 Score=68.39 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhh--cccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHH
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 485 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~--aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~ 485 (798)
.+..+.|+||.|.|||.|+..|+.-... .....|++. ..++..+ .. .|. .....+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~---------~~l~~~l------~~---~~~----~~~~~~~ 173 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF---------VEGFGDL------KD---DFD----LLEAKLN 173 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH---------HHHHHHH------HH---HHH----HHHHHHH
Confidence 3456999999999999999998643221 111122221 1111111 00 111 1112334
Q ss_pred hCCCCeEEEEecCCC---CC---ChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 486 QSTSQSLVLLDEIGA---GT---NPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 486 ~a~~psLLLLDEP~s---Gl---Dp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
.+.+.+||+||+... |. +......+ ..+++.....+.. +|+||+.
T Consensus 174 ~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~l-f~iin~R~~~~k~-tIitsn~ 224 (266)
T PRK06921 174 RMKKVEVLFIDDLFKPVNGKPRATEWQIEQM-YSVLNYRYLNHKP-ILISSEL 224 (266)
T ss_pred HhcCCCEEEEeccccccCCCccCCHHHHHHH-HHHHHHHHHCCCC-EEEECCC
Confidence 456889999999954 43 22222334 4577766666676 7888885
No 489
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.09 E-value=0.0031 Score=63.48 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|.++.|+||.|+||||++-.++..
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~ 55 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAA 55 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988543
No 490
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.07 E-value=0.0032 Score=67.19 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-..++++.-+ ..|++++|.||+|+|||||+..++.
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 44556666544 7789999999999999999998753
No 491
>PRK02224 chromosome segregation protein; Provisional
Probab=97.07 E-value=0.00092 Score=83.18 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=43.6
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccee
Q 003747 491 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 491 sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
+++|||||++|+|+.....+. .++..+...|.+.||++||+.++...|++++.+.
T Consensus 813 ~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~ 867 (880)
T PRK02224 813 PPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVGAADDLVRVE 867 (880)
T ss_pred CceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHHhcCeeEEee
Confidence 679999999999997777765 4667777666523999999999988888777663
No 492
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0035 Score=72.46 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=58.1
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcccc---cccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhC
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 487 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq~G---~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a 487 (798)
-+.|.||.|+|||.|+..++--......| .++++ . .+...+...+ ......+..+....
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~----~f~~~~~~~l-------------~~~~~~~~~~~~~~ 204 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-D----EFARKAVDIL-------------QKTHKEIEQFKNEI 204 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-H----HHHHHHHHHH-------------HHhhhHHHHHHHHh
Confidence 38899999999999999986422111111 12221 0 0111111111 11001223344445
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
.++++||+||+..--.-.........+++.+.+.|.. +|++++..
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~-iIltsd~~ 249 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQ-LFFSSDKS 249 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCc-EEEECCCC
Confidence 6889999999965432223334445688888888886 78888753
No 493
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.06 E-value=0.00021 Score=81.86 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=27.8
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLK 427 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK 427 (798)
.++.+++++ ..|++++|+|||||||||||+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 578888888 889999999999999999999
No 494
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.002 Score=68.94 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=55.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 486 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~ 486 (798)
..++-++|+||.|+|||+|...|+.-.. +.|..+- +.-...++..+... ... ......+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~------f~t~~~l~~~l~~~---------~~~--~~~~~~l~~ 156 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVL------FATAAQWVARLAAA---------HHA--GRLQAELVK 156 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH--HCCCchh------hhhHHHHHHHHHHH---------Hhc--CcHHHHHHH
Confidence 3445699999999999999999863221 1232111 11111222222100 000 011122333
Q ss_pred CCCCeEEEEecCCCC-CChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 487 STSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 487 a~~psLLLLDEP~sG-lDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
..+++||++||++.- .++ ....+...++....+.+ . +|++|+.
T Consensus 157 l~~~dlLIIDD~g~~~~~~-~~~~~L~~li~~r~~~~-s-~IitSn~ 200 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEP-EAANLFFQLVSSRYERA-S-LIVTSNK 200 (254)
T ss_pred hccCCEEEEcccccCCCCH-HHHHHHHHHHHHHHhcC-C-EEEEcCC
Confidence 467899999999764 355 44444445665544444 4 6888886
No 495
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.05 E-value=0.0019 Score=73.23 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccc------------cccccccccccchhh--HHhhhcCch-hhHhhhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------LHILSSEYAKVPWFD--SVFADIGDE-QSLSQSLS 471 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G------------~~vpa~~~~~i~~~~--~i~~~ig~~-~si~~~ls 471 (798)
+.| +++|+|.|--||||||+.|-.-+|..-.| ..+-+.++..+.-.| -++..+... +.-...-.
T Consensus 243 p~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~FsT~ 321 (448)
T PF09818_consen 243 PKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTCFSTE 321 (448)
T ss_pred CCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCccccc
Confidence 344 89999999999999999995333321111 001110111110000 011111110 00011111
Q ss_pred hhhHHHHHHHHHHHh-CCCCeEEEEecCCCCCChHHHHHHHHHHH--------------HHH-HhcCCcEEEEEecchhH
Q 003747 472 TFSGHLKQIGNIISQ-STSQSLVLLDEIGAGTNPLEGTALGMSLL--------------EAF-AESGSLLTIATTHHGEL 535 (798)
Q Consensus 472 tfs~~~~ri~~il~~-a~~psLLLLDEP~sGlDp~eg~al~~all--------------~~L-~~~g~t~VIitTHd~el 535 (798)
.-||-+.+-+.|... -...++||+||=|++||..-....+..++ ..| .+.|.++||++.---+.
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy 401 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDY 401 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhh
Confidence 223444444444422 34789999999999999866444444333 333 45687756666556667
Q ss_pred HhhhccccceeeeE
Q 003747 536 KTLKYSNDFFENAC 549 (798)
Q Consensus 536 ~~~a~~~~~l~ng~ 549 (798)
...||+++.|.+..
T Consensus 402 ~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 402 FDVADRVIMMDEYR 415 (448)
T ss_pred HhhCCEEEEecCcc
Confidence 77788777765544
No 496
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.05 E-value=0.0042 Score=76.87 Aligned_cols=49 Identities=16% Similarity=-0.018 Sum_probs=38.3
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
-..|.++++|||..++|.......+..+++.+++.|++ ++++||+.+..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~-~i~~TQ~~~d~ 681 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVS-VIFATQSLADI 681 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCHHHH
Confidence 45899999999999999434445556677778888887 89999997653
No 497
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.04 E-value=0.0024 Score=73.47 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.++|.||+|+|||++.|.++.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999964
No 498
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.00033 Score=78.78 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=50.0
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---cccccccccccccchhhHHh---hhcCchhhHhhhhh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---SGLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLS 471 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---~G~~vpa~~~~~i~~~~~i~---~~ig~~~si~~~ls 471 (798)
+..+.+.. ..+.+++++||||+||||++..|+......+ ...++.. +..+++-.+++- ..+|+.-......
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~- 203 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDG- 203 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCc-
Confidence 44344333 5568899999999999999999875432221 1122333 222333333321 1222211000000
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEEEecCCCC
Q 003747 472 TFSGHLKQIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 472 tfs~~~~ri~~il~~a~~psLLLLDEP~sG 501 (798)
..+...+....+.+++|+|.|+..
T Consensus 204 ------~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 204 ------GDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ------ccHHHHHHHhcCCCEEEEcCCCCC
Confidence 112233444577899999999755
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.03 E-value=0.0092 Score=74.11 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
.+|+||.|+||||+.+.++..
T Consensus 211 ~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998643
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.0026 Score=65.88 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+.|+++.|.||+|+|||||+..++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 468899999999999999999886543
Done!